Query 004924
Match_columns 723
No_of_seqs 785 out of 4343
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 15:08:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004924.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004924hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 2.3E-59 5.1E-64 458.4 29.0 462 122-698 11-515 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 1.3E-59 2.8E-64 446.6 24.5 460 126-695 5-508 (508)
3 KOG0271 Notchless-like WD40 re 100.0 3.3E-49 7.2E-54 383.8 28.0 313 332-694 122-479 (480)
4 KOG0273 Beta-transducin family 100.0 1.6E-44 3.5E-49 360.3 32.1 309 339-696 193-523 (524)
5 KOG0271 Notchless-like WD40 re 100.0 2.8E-41 6.1E-46 328.6 25.9 290 368-705 111-448 (480)
6 KOG0272 U4/U6 small nuclear ri 100.0 6.3E-41 1.4E-45 330.7 23.0 278 373-695 174-459 (459)
7 KOG0272 U4/U6 small nuclear ri 100.0 1.2E-39 2.6E-44 321.7 22.9 270 331-641 181-458 (459)
8 KOG0286 G-protein beta subunit 100.0 2.8E-37 6E-42 291.6 32.3 292 306-641 46-343 (343)
9 KOG0286 G-protein beta subunit 100.0 4.9E-37 1.1E-41 289.9 33.4 282 368-694 51-343 (343)
10 KOG0279 G protein beta subunit 100.0 6.8E-37 1.5E-41 287.4 33.2 294 367-696 10-313 (315)
11 KOG0279 G protein beta subunit 100.0 1.4E-35 3E-40 278.6 30.3 289 309-643 9-313 (315)
12 KOG0291 WD40-repeat-containing 100.0 1.4E-34 3E-39 303.8 38.7 325 333-698 315-711 (893)
13 KOG0318 WD40 repeat stress pro 100.0 4.9E-34 1.1E-38 288.9 38.5 356 331-701 65-565 (603)
14 KOG0291 WD40-repeat-containing 100.0 6.2E-34 1.3E-38 298.9 40.1 343 331-702 151-556 (893)
15 KOG0318 WD40 repeat stress pro 100.0 4.2E-33 9.1E-38 282.1 40.2 342 329-696 194-602 (603)
16 KOG0295 WD40 repeat-containing 100.0 3.5E-35 7.7E-40 285.1 23.6 270 333-642 116-405 (406)
17 KOG0315 G-protein beta subunit 100.0 3.1E-34 6.8E-39 265.0 28.6 269 387-700 11-292 (311)
18 KOG0319 WD40-repeat-containing 100.0 8.4E-35 1.8E-39 305.5 27.5 362 300-698 132-621 (775)
19 KOG0265 U5 snRNP-specific prot 100.0 1.9E-34 4.1E-39 273.6 27.3 279 372-693 45-335 (338)
20 KOG0315 G-protein beta subunit 100.0 1.8E-33 3.9E-38 260.0 31.3 279 338-652 11-297 (311)
21 KOG0296 Angio-associated migra 100.0 1E-32 2.2E-37 268.2 32.6 330 308-696 57-398 (399)
22 KOG0645 WD40 repeat protein [G 100.0 2E-32 4.4E-37 256.2 33.1 291 368-696 10-311 (312)
23 KOG0284 Polyadenylation factor 100.0 1.7E-34 3.7E-39 283.9 18.6 280 374-698 96-382 (464)
24 KOG0295 WD40 repeat-containing 100.0 2.2E-33 4.7E-38 272.7 24.9 278 373-695 107-405 (406)
25 KOG0282 mRNA splicing factor [ 100.0 1.6E-34 3.4E-39 290.3 17.6 282 372-694 212-503 (503)
26 KOG0263 Transcription initiati 100.0 1.4E-33 3.1E-38 299.7 24.4 260 373-645 377-651 (707)
27 KOG0285 Pleiotropic regulator 100.0 7.4E-33 1.6E-37 267.8 25.4 288 372-697 149-440 (460)
28 KOG0645 WD40 repeat protein [G 100.0 1.5E-31 3.3E-36 250.4 31.9 286 308-643 7-311 (312)
29 KOG0284 Polyadenylation factor 100.0 7.6E-34 1.7E-38 279.4 16.9 274 330-643 101-380 (464)
30 KOG0273 Beta-transducin family 100.0 5.3E-32 1.2E-36 270.9 30.2 274 327-643 237-523 (524)
31 KOG0266 WD40 repeat-containing 100.0 7.4E-32 1.6E-36 295.3 33.4 288 373-696 158-454 (456)
32 KOG0319 WD40-repeat-containing 100.0 1.7E-31 3.7E-36 280.7 33.8 348 328-700 108-581 (775)
33 KOG0263 Transcription initiati 100.0 3E-32 6.5E-37 289.7 27.3 241 324-600 377-650 (707)
34 PLN00181 protein SPA1-RELATED; 100.0 1.1E-30 2.4E-35 307.2 40.3 295 372-695 481-792 (793)
35 KOG0316 Conserved WD40 repeat- 100.0 1.4E-31 3E-36 245.4 25.3 277 373-696 16-299 (307)
36 cd00200 WD40 WD40 domain, foun 100.0 2.7E-30 5.8E-35 265.5 37.3 277 373-694 8-289 (289)
37 KOG0278 Serine/threonine kinas 100.0 6.1E-32 1.3E-36 249.8 17.9 294 371-711 11-314 (334)
38 KOG0265 U5 snRNP-specific prot 100.0 1.3E-30 2.9E-35 247.4 26.4 274 332-640 54-335 (338)
39 KOG0316 Conserved WD40 repeat- 100.0 4.4E-31 9.6E-36 242.2 21.8 243 437-701 15-262 (307)
40 KOG0306 WD40-repeat-containing 100.0 7.3E-30 1.6E-34 268.3 32.0 244 435-698 369-624 (888)
41 KOG0266 WD40 repeat-containing 100.0 5.2E-30 1.1E-34 280.7 31.5 278 331-643 165-454 (456)
42 cd00200 WD40 WD40 domain, foun 100.0 5.2E-29 1.1E-33 256.0 36.4 268 333-641 17-289 (289)
43 KOG0292 Vesicle coat complex C 100.0 6.1E-30 1.3E-34 272.6 27.9 291 373-701 8-326 (1202)
44 KOG0296 Angio-associated migra 100.0 1.9E-29 4.1E-34 245.5 28.7 290 373-706 63-366 (399)
45 KOG0276 Vesicle coat complex C 100.0 7.4E-30 1.6E-34 263.0 26.9 275 373-692 12-295 (794)
46 KOG0281 Beta-TrCP (transducin 100.0 4.1E-31 9E-36 254.5 14.5 265 336-648 206-482 (499)
47 KOG0640 mRNA cleavage stimulat 100.0 3.2E-29 6.9E-34 238.4 24.8 294 373-695 111-425 (430)
48 KOG0285 Pleiotropic regulator 100.0 3.6E-29 7.7E-34 242.4 25.2 272 333-644 159-440 (460)
49 KOG0292 Vesicle coat complex C 100.0 1.2E-28 2.7E-33 262.7 31.3 272 332-643 16-321 (1202)
50 KOG0281 Beta-TrCP (transducin 100.0 2.5E-30 5.5E-35 249.1 16.5 276 373-699 196-480 (499)
51 KOG0283 WD40 repeat-containing 100.0 2.6E-29 5.6E-34 269.7 26.1 271 372-645 265-578 (712)
52 PLN00181 protein SPA1-RELATED; 100.0 4E-28 8.6E-33 285.6 38.3 281 330-642 488-792 (793)
53 KOG0293 WD40 repeat-containing 100.0 1.6E-28 3.4E-33 242.0 27.3 276 332-644 231-514 (519)
54 KOG1407 WD40 repeat protein [F 100.0 4.2E-28 9.1E-33 226.1 28.2 270 372-687 18-293 (313)
55 KOG0772 Uncharacterized conser 100.0 9.1E-29 2E-33 249.9 25.0 296 368-698 163-490 (641)
56 KOG0275 Conserved WD40 repeat- 100.0 7.7E-30 1.7E-34 243.5 16.4 282 328-641 216-507 (508)
57 KOG0313 Microtubule binding pr 100.0 3.5E-28 7.5E-33 237.7 26.8 273 373-696 104-418 (423)
58 KOG1446 Histone H3 (Lys4) meth 100.0 5.9E-27 1.3E-31 225.2 34.4 284 373-699 13-306 (311)
59 KOG0973 Histone transcription 100.0 2.1E-28 4.6E-33 269.0 27.1 309 332-699 20-358 (942)
60 KOG0288 WD40 repeat protein Ti 100.0 2E-29 4.4E-34 248.8 17.0 279 373-694 174-459 (459)
61 KOG0282 mRNA splicing factor [ 100.0 3.1E-29 6.8E-34 252.3 18.6 290 305-641 204-503 (503)
62 KOG0313 Microtubule binding pr 100.0 1.1E-27 2.4E-32 234.2 27.7 270 337-643 115-418 (423)
63 KOG0276 Vesicle coat complex C 100.0 2.2E-27 4.8E-32 244.9 29.9 268 331-639 19-295 (794)
64 KOG0278 Serine/threonine kinas 100.0 1.3E-28 2.8E-33 227.8 17.9 287 310-648 9-302 (334)
65 KOG0643 Translation initiation 100.0 1.3E-27 2.8E-32 223.4 24.1 287 372-697 8-318 (327)
66 KOG1408 WD40 repeat protein [F 100.0 3.8E-27 8.2E-32 245.9 27.8 348 328-697 327-714 (1080)
67 KOG0306 WD40-repeat-containing 100.0 2.3E-26 5E-31 242.1 31.5 304 344-697 341-665 (888)
68 KOG0305 Anaphase promoting com 100.0 1.2E-26 2.6E-31 243.7 27.9 271 332-645 184-463 (484)
69 KOG0274 Cdc4 and related F-box 100.0 1.8E-26 3.8E-31 251.9 30.3 270 337-651 218-490 (537)
70 KOG0274 Cdc4 and related F-box 100.0 2.9E-26 6.3E-31 250.2 30.6 276 373-702 207-488 (537)
71 KOG0310 Conserved WD40 repeat- 100.0 1.3E-26 2.7E-31 234.1 25.6 280 373-697 25-310 (487)
72 PTZ00421 coronin; Provisional 100.0 1.8E-25 3.8E-30 243.9 36.2 294 373-698 19-333 (493)
73 KOG0283 WD40 repeat-containing 100.0 6.7E-27 1.5E-31 251.3 24.3 241 437-697 265-577 (712)
74 KOG0277 Peroxisomal targeting 100.0 6.5E-27 1.4E-31 217.4 20.4 237 438-695 59-308 (311)
75 KOG0294 WD40 repeat-containing 99.9 9.1E-26 2E-30 216.0 27.1 240 434-698 38-283 (362)
76 KOG1539 WD repeat protein [Gen 99.9 1.7E-25 3.6E-30 238.5 30.8 334 330-695 207-647 (910)
77 KOG0288 WD40 repeat protein Ti 99.9 1.1E-26 2.3E-31 229.5 20.1 275 330-641 180-459 (459)
78 KOG0643 Translation initiation 99.9 1.4E-25 3E-30 210.0 26.4 269 333-644 18-318 (327)
79 PTZ00421 coronin; Provisional 99.9 4.7E-25 1E-29 240.6 34.7 267 333-625 28-315 (493)
80 KOG0268 Sof1-like rRNA process 99.9 4.6E-27 9.9E-32 228.4 16.2 279 372-699 64-348 (433)
81 KOG0772 Uncharacterized conser 99.9 5E-26 1.1E-30 230.2 24.0 308 303-643 155-487 (641)
82 KOG0277 Peroxisomal targeting 99.9 5.1E-26 1.1E-30 211.4 21.7 260 346-642 37-308 (311)
83 KOG1407 WD40 repeat protein [F 99.9 1.2E-25 2.7E-30 209.7 22.7 246 437-706 18-271 (313)
84 KOG0641 WD40 repeat protein [G 99.9 3.8E-24 8.3E-29 195.2 31.8 303 373-696 31-349 (350)
85 KOG0640 mRNA cleavage stimulat 99.9 8.2E-26 1.8E-30 215.2 20.8 289 326-643 113-426 (430)
86 KOG1446 Histone H3 (Lys4) meth 99.9 2.5E-24 5.5E-29 207.1 30.5 249 438-705 13-273 (311)
87 KOG0308 Conserved WD40 repeat- 99.9 6.7E-26 1.5E-30 235.4 21.2 326 334-699 34-396 (735)
88 KOG0289 mRNA splicing factor [ 99.9 7.9E-25 1.7E-29 217.5 26.9 269 334-642 228-505 (506)
89 KOG0641 WD40 repeat protein [G 99.9 6E-24 1.3E-28 193.9 30.4 293 321-643 28-349 (350)
90 KOG0299 U3 snoRNP-associated p 99.9 6.6E-25 1.4E-29 220.0 25.4 291 373-695 141-455 (479)
91 KOG0268 Sof1-like rRNA process 99.9 4.2E-26 9.2E-31 221.7 16.3 268 339-651 81-353 (433)
92 KOG0301 Phospholipase A2-activ 99.9 6.1E-25 1.3E-29 230.0 26.0 272 372-696 12-288 (745)
93 KOG0305 Anaphase promoting com 99.9 1.1E-24 2.4E-29 228.9 26.4 272 378-698 181-463 (484)
94 PTZ00420 coronin; Provisional 99.9 1.4E-23 3.1E-28 229.9 35.2 222 457-699 53-296 (568)
95 KOG1408 WD40 repeat protein [F 99.9 2.8E-24 6E-29 224.6 28.0 240 450-706 393-681 (1080)
96 KOG2096 WD40 repeat protein [G 99.9 3.7E-24 8.1E-29 204.8 25.0 290 368-695 82-401 (420)
97 KOG0308 Conserved WD40 repeat- 99.9 3.2E-25 7E-30 230.3 19.0 279 379-696 29-327 (735)
98 KOG1274 WD40 repeat protein [G 99.9 6.6E-24 1.4E-28 229.0 29.7 283 372-693 11-297 (933)
99 KOG0310 Conserved WD40 repeat- 99.9 4.6E-24 9.9E-29 215.7 26.7 277 314-644 26-310 (487)
100 KOG0647 mRNA export protein (c 99.9 5.3E-24 1.2E-28 202.8 25.4 270 373-685 26-312 (347)
101 PTZ00420 coronin; Provisional 99.9 4.4E-23 9.6E-28 226.0 36.5 220 437-675 72-316 (568)
102 KOG2106 Uncharacterized conser 99.9 7.6E-23 1.6E-27 206.8 34.2 349 304-697 93-522 (626)
103 KOG0289 mRNA splicing factor [ 99.9 8E-24 1.7E-28 210.4 26.6 278 374-695 219-505 (506)
104 KOG1063 RNA polymerase II elon 99.9 2.6E-23 5.7E-28 217.7 31.6 377 304-696 180-763 (764)
105 KOG0299 U3 snoRNP-associated p 99.9 4.4E-24 9.5E-29 214.1 24.3 267 333-632 150-444 (479)
106 KOG0300 WD40 repeat-containing 99.9 6.3E-24 1.4E-28 202.8 23.6 287 372-699 146-479 (481)
107 KOG0300 WD40 repeat-containing 99.9 4.3E-24 9.3E-29 203.9 21.8 289 339-645 162-478 (481)
108 KOG2096 WD40 repeat protein [G 99.9 2.7E-23 5.8E-28 199.0 26.2 306 309-645 80-404 (420)
109 KOG0639 Transducin-like enhanc 99.9 4.4E-24 9.5E-29 215.2 20.6 279 373-695 418-703 (705)
110 KOG1539 WD repeat protein [Gen 99.9 3.5E-22 7.6E-27 213.3 34.6 329 338-701 173-611 (910)
111 KOG4283 Transcription-coupled 99.9 4.4E-23 9.5E-28 195.5 24.4 298 373-695 42-364 (397)
112 KOG0294 WD40 repeat-containing 99.9 2.8E-22 6E-27 192.2 28.8 236 371-645 40-283 (362)
113 KOG1036 Mitotic spindle checkp 99.9 1.5E-22 3.3E-27 193.8 26.5 268 373-686 12-294 (323)
114 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.4E-21 5.1E-26 202.2 37.7 277 338-653 2-289 (300)
115 KOG1332 Vesicle coat complex C 99.9 1.5E-23 3.3E-28 194.0 17.2 245 372-644 9-287 (299)
116 KOG1332 Vesicle coat complex C 99.9 2E-23 4.4E-28 193.1 17.9 254 437-706 9-295 (299)
117 KOG0301 Phospholipase A2-activ 99.9 1.3E-22 2.8E-27 212.8 26.0 261 336-644 24-289 (745)
118 KOG0264 Nucleosome remodeling 99.9 3E-23 6.4E-28 208.5 20.2 250 373-643 123-404 (422)
119 KOG2048 WD40 repeat protein [G 99.9 1E-21 2.2E-26 205.8 32.2 289 374-697 25-320 (691)
120 KOG2048 WD40 repeat protein [G 99.9 3.9E-21 8.4E-26 201.5 36.0 352 331-698 31-550 (691)
121 KOG0639 Transducin-like enhanc 99.9 3.4E-23 7.3E-28 208.9 19.6 272 333-642 427-703 (705)
122 KOG0647 mRNA export protein (c 99.9 3.7E-22 8.1E-27 190.3 23.4 249 437-701 25-286 (347)
123 KOG0321 WD40 repeat-containing 99.9 1.4E-22 3E-27 210.5 22.1 294 378-698 53-393 (720)
124 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 6.7E-21 1.5E-25 198.7 35.3 271 386-704 1-287 (300)
125 KOG1063 RNA polymerase II elon 99.9 2E-21 4.3E-26 203.8 29.0 335 339-698 161-650 (764)
126 KOG0264 Nucleosome remodeling 99.9 2.6E-22 5.5E-27 201.8 21.0 245 333-599 132-404 (422)
127 KOG2055 WD40 repeat protein [G 99.9 1.4E-21 3.1E-26 196.0 26.0 284 373-696 212-512 (514)
128 KOG0646 WD40 repeat protein [G 99.9 5.3E-22 1.2E-26 199.7 22.8 205 438-652 80-316 (476)
129 KOG2106 Uncharacterized conser 99.9 1E-20 2.2E-25 191.5 32.0 321 330-697 205-582 (626)
130 KOG0973 Histone transcription 99.9 4E-22 8.7E-27 219.9 23.5 260 373-701 12-317 (942)
131 KOG0646 WD40 repeat protein [G 99.9 4.6E-22 9.9E-27 200.2 21.5 244 449-701 50-312 (476)
132 KOG0269 WD40 repeat-containing 99.9 2E-22 4.3E-27 213.7 18.9 282 333-646 47-343 (839)
133 KOG1273 WD40 repeat protein [G 99.9 2.2E-21 4.8E-26 185.7 23.4 284 377-706 26-331 (405)
134 KOG4283 Transcription-coupled 99.9 2.6E-21 5.7E-26 183.5 23.5 279 335-643 54-365 (397)
135 KOG1036 Mitotic spindle checkp 99.9 6.3E-21 1.4E-25 182.8 25.4 263 332-633 20-294 (323)
136 KOG2445 Nuclear pore complex c 99.9 1.3E-20 2.7E-25 180.3 27.0 256 437-699 11-321 (361)
137 KOG1274 WD40 repeat protein [G 99.9 1.1E-20 2.5E-25 204.2 28.5 263 333-640 21-297 (933)
138 KOG4378 Nuclear protein COP1 [ 99.9 2.7E-21 5.8E-26 195.1 21.6 289 340-675 5-303 (673)
139 KOG0269 WD40 repeat-containing 99.9 9.6E-22 2.1E-26 208.5 19.1 286 375-698 40-342 (839)
140 KOG1034 Transcriptional repres 99.9 8.3E-21 1.8E-25 183.0 22.8 291 373-696 37-383 (385)
141 KOG0267 Microtubule severing p 99.9 7.7E-23 1.7E-27 215.1 9.5 229 437-687 26-259 (825)
142 KOG2445 Nuclear pore complex c 99.9 3.2E-20 6.9E-25 177.6 25.6 248 372-644 11-319 (361)
143 KOG0650 WD40 repeat nucleolar 99.9 1.2E-20 2.5E-25 194.8 23.3 280 372-694 398-733 (733)
144 KOG2055 WD40 repeat protein [G 99.9 2.9E-20 6.2E-25 186.7 25.0 279 333-643 221-512 (514)
145 KOG0267 Microtubule severing p 99.9 3.3E-22 7.2E-27 210.4 10.5 250 339-635 6-260 (825)
146 KOG1273 WD40 repeat protein [G 99.9 5.3E-20 1.1E-24 176.3 23.9 275 332-645 30-324 (405)
147 KOG4328 WD40 protein [Function 99.9 8.5E-20 1.8E-24 183.3 23.1 291 373-696 185-495 (498)
148 KOG0650 WD40 repeat nucleolar 99.9 1.3E-19 2.8E-24 187.1 24.7 303 306-640 391-732 (733)
149 KOG2919 Guanine nucleotide-bin 99.8 2.7E-19 5.8E-24 172.2 24.4 277 377-687 52-361 (406)
150 KOG0270 WD40 repeat-containing 99.8 1.5E-19 3.2E-24 181.1 21.3 295 333-648 133-454 (463)
151 KOG0270 WD40 repeat-containing 99.8 2.5E-19 5.5E-24 179.4 22.6 234 449-701 192-454 (463)
152 KOG1009 Chromatin assembly com 99.8 6.3E-19 1.4E-23 174.7 24.4 316 314-699 13-375 (434)
153 KOG0302 Ribosome Assembly prot 99.8 3.1E-19 6.8E-24 175.1 21.2 244 437-694 149-436 (440)
154 KOG4378 Nuclear protein COP1 [ 99.8 3.5E-19 7.7E-24 179.9 20.1 238 440-698 35-282 (673)
155 KOG4328 WD40 protein [Function 99.8 8.9E-19 1.9E-23 176.0 22.8 301 309-644 180-496 (498)
156 KOG1445 Tumor-specific antigen 99.8 1.3E-18 2.8E-23 180.3 22.8 120 372-508 77-201 (1012)
157 KOG0321 WD40 repeat-containing 99.8 9.8E-19 2.1E-23 182.1 21.8 281 336-645 63-393 (720)
158 KOG0307 Vesicle coat complex C 99.8 5.9E-20 1.3E-24 203.7 13.5 243 438-699 63-330 (1049)
159 KOG1538 Uncharacterized conser 99.8 1.5E-18 3.2E-23 180.8 22.0 268 327-643 14-293 (1081)
160 KOG0649 WD40 repeat protein [G 99.8 2.8E-17 6.2E-22 152.4 26.2 287 375-694 11-314 (325)
161 KOG0307 Vesicle coat complex C 99.8 2.9E-19 6.3E-24 198.2 14.8 273 344-646 36-330 (1049)
162 KOG2919 Guanine nucleotide-bin 99.8 2E-17 4.4E-22 159.4 24.6 274 332-633 56-360 (406)
163 COG2319 FOG: WD40 repeat [Gene 99.8 2E-15 4.3E-20 163.9 42.6 326 330-705 70-409 (466)
164 KOG0302 Ribosome Assembly prot 99.8 3E-18 6.4E-23 168.3 17.7 207 476-698 149-380 (440)
165 KOG1538 Uncharacterized conser 99.8 1.1E-17 2.4E-22 174.4 21.9 271 376-698 14-295 (1081)
166 COG2319 FOG: WD40 repeat [Gene 99.8 3.3E-15 7.1E-20 162.2 41.1 312 334-697 119-443 (466)
167 KOG0649 WD40 repeat protein [G 99.8 3.5E-16 7.5E-21 145.2 26.4 276 333-640 18-313 (325)
168 KOG1963 WD40 repeat protein [G 99.8 9.5E-16 2.1E-20 166.3 32.8 351 331-696 22-487 (792)
169 KOG1034 Transcriptional repres 99.8 9.2E-17 2E-21 155.3 21.8 272 340-643 58-383 (385)
170 KOG1188 WD40 repeat protein [G 99.8 6.4E-17 1.4E-21 157.3 19.8 273 387-695 41-345 (376)
171 KOG4227 WD40 repeat protein [G 99.8 9.2E-17 2E-21 158.0 20.8 300 372-697 54-388 (609)
172 KOG1517 Guanine nucleotide bin 99.8 2.2E-16 4.9E-21 172.8 25.6 299 328-646 1067-1384(1387)
173 KOG1007 WD repeat protein TSSC 99.7 1.8E-16 4E-21 150.5 21.4 213 470-696 114-361 (370)
174 KOG1334 WD40 repeat protein [G 99.7 1.9E-17 4.1E-22 167.7 14.7 292 372-699 140-469 (559)
175 KOG0303 Actin-binding protein 99.7 3.3E-16 7.2E-21 154.8 21.3 230 371-624 78-320 (472)
176 KOG0322 G-protein beta subunit 99.7 9.3E-17 2E-21 150.8 16.4 282 307-642 6-322 (323)
177 PRK11028 6-phosphogluconolacto 99.7 9.8E-15 2.1E-19 154.6 34.0 271 340-643 5-304 (330)
178 KOG0303 Actin-binding protein 99.7 1.7E-16 3.6E-21 156.9 18.7 201 437-646 79-297 (472)
179 KOG1007 WD repeat protein TSSC 99.7 4.4E-16 9.5E-21 148.0 20.2 257 321-599 59-361 (370)
180 KOG0642 Cell-cycle nuclear pro 99.7 1E-16 2.2E-21 165.5 17.1 249 437-704 292-569 (577)
181 KOG0642 Cell-cycle nuclear pro 99.7 6.9E-17 1.5E-21 166.7 15.4 258 373-652 293-570 (577)
182 KOG1310 WD40 repeat protein [G 99.7 6.7E-16 1.5E-20 158.2 21.5 207 372-600 48-304 (758)
183 KOG1517 Guanine nucleotide bin 99.7 1.1E-15 2.4E-20 167.5 24.3 294 375-699 1065-1384(1387)
184 KOG1240 Protein kinase contain 99.7 2.5E-15 5.4E-20 167.3 26.8 297 372-694 1046-1431(1431)
185 PRK11028 6-phosphogluconolacto 99.7 3.5E-14 7.6E-19 150.4 34.0 244 439-697 34-305 (330)
186 KOG2110 Uncharacterized conser 99.7 2.3E-14 4.9E-19 141.2 28.1 218 374-602 5-251 (391)
187 KOG1188 WD40 repeat protein [G 99.7 1.4E-15 3E-20 148.2 18.8 276 338-643 41-346 (376)
188 KOG1587 Cytoplasmic dynein int 99.7 8E-15 1.7E-19 159.4 26.6 265 347-645 222-518 (555)
189 KOG0644 Uncharacterized conser 99.7 1.1E-16 2.4E-21 171.2 11.8 273 372-699 188-471 (1113)
190 KOG0290 Conserved WD40 repeat- 99.7 8E-15 1.7E-19 139.7 22.6 284 374-692 44-361 (364)
191 KOG2110 Uncharacterized conser 99.7 3.2E-14 7E-19 140.2 27.1 238 438-699 4-251 (391)
192 KOG0322 G-protein beta subunit 99.7 5E-16 1.1E-20 146.0 13.2 243 437-695 12-322 (323)
193 KOG1963 WD40 repeat protein [G 99.7 5.3E-14 1.2E-18 152.9 30.6 328 333-698 168-540 (792)
194 KOG1445 Tumor-specific antigen 99.7 1.6E-15 3.5E-20 157.6 16.8 249 333-647 587-848 (1012)
195 KOG1524 WD40 repeat-containing 99.7 2.9E-15 6.3E-20 153.2 17.8 265 373-695 13-285 (737)
196 KOG4227 WD40 repeat protein [G 99.6 1.5E-14 3.3E-19 142.5 20.8 292 322-643 53-387 (609)
197 KOG0644 Uncharacterized conser 99.6 2E-16 4.4E-21 169.2 8.0 235 437-700 188-430 (1113)
198 KOG1587 Cytoplasmic dynein int 99.6 7.9E-14 1.7E-18 151.7 26.5 245 438-697 241-517 (555)
199 KOG1523 Actin-related protein 99.6 2.7E-14 5.9E-19 138.1 19.8 259 438-716 9-297 (361)
200 PRK01742 tolB translocation pr 99.6 5E-14 1.1E-18 154.1 24.6 230 347-675 184-425 (429)
201 KOG2139 WD40 repeat protein [G 99.6 2E-13 4.3E-18 134.0 25.5 282 374-696 98-431 (445)
202 KOG0290 Conserved WD40 repeat- 99.6 2.9E-14 6.4E-19 135.9 19.0 230 339-596 115-362 (364)
203 PF02239 Cytochrom_D1: Cytochr 99.6 2.8E-12 6.2E-17 135.9 36.3 325 340-713 9-364 (369)
204 KOG1009 Chromatin assembly com 99.6 4E-14 8.6E-19 141.0 18.8 186 438-632 12-249 (434)
205 KOG1524 WD40 repeat-containing 99.6 1.9E-14 4.2E-19 147.3 16.8 204 336-594 74-281 (737)
206 KOG4497 Uncharacterized conser 99.6 1.3E-13 2.9E-18 133.5 21.6 302 332-689 55-425 (447)
207 KOG0771 Prolactin regulatory e 99.6 1.3E-14 2.9E-19 145.5 15.3 198 482-697 148-355 (398)
208 KOG1240 Protein kinase contain 99.6 2.3E-13 5E-18 152.0 26.4 262 437-707 1046-1346(1431)
209 KOG4497 Uncharacterized conser 99.6 2.7E-13 5.9E-18 131.3 23.4 271 379-697 13-392 (447)
210 KOG2111 Uncharacterized conser 99.6 4.6E-13 9.9E-18 129.7 24.6 239 441-699 7-259 (346)
211 KOG0771 Prolactin regulatory e 99.6 1.4E-14 3.1E-19 145.3 14.7 196 443-644 148-355 (398)
212 KOG1272 WD40-repeat-containing 99.6 8E-15 1.7E-19 148.0 11.0 280 375-703 130-416 (545)
213 KOG2139 WD40 repeat protein [G 99.6 1.4E-12 3.1E-17 128.0 26.0 286 340-643 113-431 (445)
214 PRK01742 tolB translocation pr 99.6 3E-13 6.5E-18 148.0 23.8 206 458-696 184-401 (429)
215 KOG2111 Uncharacterized conser 99.6 4.5E-12 9.8E-17 122.9 28.6 214 376-600 7-257 (346)
216 KOG1523 Actin-related protein 99.6 7.6E-13 1.6E-17 128.2 23.2 229 374-624 10-260 (361)
217 KOG2321 WD40 repeat protein [G 99.6 6.2E-13 1.3E-17 137.7 22.9 272 330-645 56-345 (703)
218 KOG2321 WD40 repeat protein [G 99.5 2E-12 4.3E-17 134.0 24.4 293 373-706 50-355 (703)
219 KOG2315 Predicted translation 99.5 6.5E-12 1.4E-16 130.4 28.1 313 333-697 42-391 (566)
220 KOG1334 WD40 repeat protein [G 99.5 9.7E-14 2.1E-18 141.1 14.3 292 326-646 143-469 (559)
221 PF10282 Lactonase: Lactonase, 99.5 1.9E-10 4.2E-15 122.1 40.2 278 347-650 13-331 (345)
222 PRK03629 tolB translocation pr 99.5 6.9E-12 1.5E-16 137.0 28.8 169 481-675 245-427 (429)
223 PRK05137 tolB translocation pr 99.5 8.1E-12 1.8E-16 137.2 28.8 214 459-700 183-416 (435)
224 KOG2394 WD40 protein DMR-N9 [G 99.5 1.4E-12 3E-17 134.3 20.1 162 451-623 187-384 (636)
225 PRK05137 tolB translocation pr 99.5 1.2E-11 2.6E-16 135.8 28.9 217 348-647 183-416 (435)
226 COG2706 3-carboxymuconate cycl 99.5 3.5E-10 7.6E-15 112.5 35.5 279 346-648 15-328 (346)
227 PRK03629 tolB translocation pr 99.5 1.2E-11 2.6E-16 135.1 27.1 210 459-696 180-406 (429)
228 KOG1272 WD40-repeat-containing 99.5 1.3E-13 2.9E-18 139.2 10.4 265 331-640 135-406 (545)
229 PRK04922 tolB translocation pr 99.5 7.9E-12 1.7E-16 137.1 25.3 212 458-697 184-412 (433)
230 KOG1354 Serine/threonine prote 99.5 3.1E-12 6.7E-17 124.9 19.3 308 373-693 24-431 (433)
231 PF02239 Cytochrom_D1: Cytochr 99.5 5.4E-11 1.2E-15 126.2 29.8 284 333-652 44-356 (369)
232 PRK04922 tolB translocation pr 99.5 2.1E-11 4.6E-16 133.7 27.1 155 481-651 250-418 (433)
233 PF08662 eIF2A: Eukaryotic tra 99.5 4.8E-12 1E-16 122.0 18.9 154 523-702 9-184 (194)
234 PF08662 eIF2A: Eukaryotic tra 99.4 9.8E-12 2.1E-16 119.8 20.6 153 483-652 10-187 (194)
235 COG5354 Uncharacterized protei 99.4 8.4E-11 1.8E-15 120.8 27.6 322 330-698 37-397 (561)
236 PRK02889 tolB translocation pr 99.4 2.5E-11 5.3E-16 132.8 25.7 210 458-695 176-402 (427)
237 KOG3881 Uncharacterized conser 99.4 1.4E-11 3E-16 122.7 20.8 252 373-651 54-328 (412)
238 KOG1310 WD40 repeat protein [G 99.4 1.7E-12 3.8E-17 133.5 14.6 215 437-652 48-312 (758)
239 KOG2394 WD40 protein DMR-N9 [G 99.4 7.2E-12 1.6E-16 129.0 17.2 240 442-699 126-455 (636)
240 PRK02889 tolB translocation pr 99.4 1.7E-10 3.7E-15 126.1 25.8 212 437-675 193-424 (427)
241 KOG2314 Translation initiation 99.4 2.1E-10 4.6E-15 118.7 24.5 323 331-697 216-574 (698)
242 PF10282 Lactonase: Lactonase, 99.4 5E-09 1.1E-13 111.3 36.0 243 440-697 37-323 (345)
243 TIGR02800 propeller_TolB tol-p 99.3 4.1E-10 8.8E-15 123.6 27.9 219 458-705 170-405 (417)
244 KOG3881 Uncharacterized conser 99.3 1.8E-10 4E-15 114.8 21.2 218 374-624 105-342 (412)
245 PRK00178 tolB translocation pr 99.3 1.1E-09 2.4E-14 120.5 26.6 212 459-698 180-408 (430)
246 PRK00178 tolB translocation pr 99.3 2.8E-09 6.1E-14 117.2 28.3 150 481-645 245-408 (430)
247 KOG1354 Serine/threonine prote 99.3 1.3E-10 2.8E-15 113.8 15.1 258 438-700 24-363 (433)
248 KOG2041 WD40 repeat protein [G 99.2 8.2E-10 1.8E-14 117.3 21.5 296 374-695 14-336 (1189)
249 KOG1409 Uncharacterized conser 99.2 9.3E-10 2E-14 108.0 19.5 248 308-601 17-272 (404)
250 TIGR02800 propeller_TolB tol-p 99.2 4.4E-09 9.5E-14 115.4 27.2 226 348-621 171-416 (417)
251 PRK04792 tolB translocation pr 99.2 3.4E-09 7.4E-14 116.4 26.2 215 459-702 199-430 (448)
252 KOG4547 WD40 repeat-containing 99.2 1.2E-09 2.6E-14 114.8 20.3 198 383-600 2-221 (541)
253 KOG0974 WD-repeat protein WDR6 99.2 4E-10 8.6E-15 125.2 17.3 185 491-698 101-290 (967)
254 TIGR02658 TTQ_MADH_Hv methylam 99.2 2.4E-07 5.2E-12 96.2 36.5 275 347-652 27-339 (352)
255 PRK01029 tolB translocation pr 99.2 1.2E-08 2.7E-13 111.1 27.8 217 374-625 184-426 (428)
256 KOG2315 Predicted translation 99.2 6.3E-09 1.4E-13 108.6 23.7 272 328-649 76-395 (566)
257 COG2706 3-carboxymuconate cycl 99.2 1.9E-07 4.1E-12 93.4 33.0 249 437-699 37-324 (346)
258 PRK04792 tolB translocation pr 99.2 7.9E-09 1.7E-13 113.5 26.1 211 438-675 216-446 (448)
259 PF04762 IKI3: IKI3 family; I 99.2 9.9E-08 2.1E-12 112.3 36.7 353 328-697 78-520 (928)
260 KOG4547 WD40 repeat-containing 99.2 7E-09 1.5E-13 109.1 24.1 190 334-550 2-221 (541)
261 KOG0974 WD-repeat protein WDR6 99.2 6.6E-10 1.4E-14 123.5 17.4 184 449-644 99-289 (967)
262 TIGR03300 assembly_YfgL outer 99.2 2.8E-08 6.2E-13 107.3 30.1 274 386-706 65-348 (377)
263 PRK01029 tolB translocation pr 99.2 8.6E-09 1.9E-13 112.3 25.9 220 459-700 166-407 (428)
264 KOG0280 Uncharacterized conser 99.1 9.1E-09 2E-13 99.2 21.2 270 346-645 45-335 (339)
265 TIGR03300 assembly_YfgL outer 99.1 9.7E-08 2.1E-12 103.1 31.8 295 336-693 64-376 (377)
266 COG4946 Uncharacterized protei 99.1 1.6E-07 3.4E-12 96.1 29.4 167 449-630 332-505 (668)
267 TIGR02658 TTQ_MADH_Hv methylam 99.1 3.1E-07 6.6E-12 95.5 32.2 229 457-704 76-338 (352)
268 COG4946 Uncharacterized protei 99.1 9.1E-07 2E-11 90.7 34.1 168 491-685 334-507 (668)
269 COG5354 Uncharacterized protei 99.0 2E-07 4.3E-12 96.5 27.6 281 321-646 67-398 (561)
270 PLN02919 haloacid dehalogenase 99.0 2E-07 4.3E-12 111.8 31.9 253 443-699 571-891 (1057)
271 KOG4190 Uncharacterized conser 99.0 1.7E-09 3.6E-14 111.8 12.0 270 335-639 745-1032(1034)
272 KOG1064 RAVE (regulator of V-A 99.0 1.7E-09 3.7E-14 125.5 12.7 182 328-551 2211-2400(2439)
273 KOG1912 WD40 repeat protein [G 99.0 2.6E-08 5.7E-13 107.2 20.3 295 368-699 9-367 (1062)
274 KOG2041 WD40 repeat protein [G 99.0 7.3E-08 1.6E-12 102.8 23.1 259 333-629 22-324 (1189)
275 KOG4532 WD40-like repeat conta 99.0 1.2E-07 2.5E-12 90.5 22.0 241 449-699 84-334 (344)
276 KOG1064 RAVE (regulator of V-A 99.0 2.6E-09 5.7E-14 124.0 13.2 193 438-653 2207-2408(2439)
277 KOG1832 HIV-1 Vpr-binding prot 99.0 1.1E-09 2.5E-14 118.7 8.4 336 250-684 1013-1377(1516)
278 PF13360 PQQ_2: PQQ-like domai 99.0 2.7E-07 5.9E-12 92.7 25.2 225 457-703 2-237 (238)
279 KOG2314 Translation initiation 99.0 2E-07 4.4E-12 97.1 24.0 272 324-634 248-558 (698)
280 PRK04043 tolB translocation pr 99.0 3.5E-07 7.6E-12 99.1 27.4 208 459-697 170-401 (419)
281 PLN02919 haloacid dehalogenase 99.0 6E-07 1.3E-11 107.8 31.4 257 378-647 571-892 (1057)
282 KOG1409 Uncharacterized conser 98.9 5.2E-08 1.1E-12 95.9 17.4 239 437-699 22-273 (404)
283 PF04762 IKI3: IKI3 family; I 98.9 3.8E-06 8.3E-11 99.1 35.8 295 373-698 74-458 (928)
284 KOG4190 Uncharacterized conser 98.9 1.1E-08 2.3E-13 105.9 11.6 283 371-692 732-1032(1034)
285 KOG0280 Uncharacterized conser 98.9 1.1E-07 2.5E-12 91.7 17.0 237 339-602 87-336 (339)
286 KOG0309 Conserved WD40 repeat- 98.9 2.3E-08 5E-13 107.0 12.9 281 374-697 24-340 (1081)
287 PRK11138 outer membrane biogen 98.8 2.2E-06 4.7E-11 93.1 28.6 287 386-706 69-363 (394)
288 PRK11138 outer membrane biogen 98.8 7.9E-06 1.7E-10 88.7 31.5 258 385-695 119-393 (394)
289 KOG0309 Conserved WD40 repeat- 98.8 5.4E-08 1.2E-12 104.3 13.8 284 325-644 24-340 (1081)
290 COG5170 CDC55 Serine/threonine 98.8 1.3E-07 2.8E-12 91.8 13.3 261 373-643 25-367 (460)
291 PF08450 SGL: SMP-30/Gluconola 98.7 3.6E-05 7.7E-10 77.7 31.8 213 444-683 4-242 (246)
292 KOG4532 WD40-like repeat conta 98.7 1.7E-06 3.7E-11 82.7 19.9 234 385-645 83-333 (344)
293 PF15492 Nbas_N: Neuroblastoma 98.7 6.4E-06 1.4E-10 80.2 24.1 219 484-708 3-273 (282)
294 KOG3914 WD repeat protein WDR4 98.7 1.4E-07 3.1E-12 95.0 12.7 160 522-701 65-228 (390)
295 PF07433 DUF1513: Protein of u 98.7 1.8E-05 3.9E-10 79.5 27.0 208 458-686 28-276 (305)
296 PF08450 SGL: SMP-30/Gluconola 98.7 4.5E-05 9.7E-10 77.0 30.6 219 379-632 4-244 (246)
297 PF13360 PQQ_2: PQQ-like domai 98.7 1.1E-05 2.3E-10 81.0 25.8 196 448-650 35-237 (238)
298 KOG1912 WD40 repeat protein [G 98.7 1.5E-06 3.4E-11 94.0 20.0 246 438-702 14-310 (1062)
299 PRK04043 tolB translocation pr 98.7 1.9E-05 4.1E-10 85.7 29.0 187 375-600 188-401 (419)
300 KOG1832 HIV-1 Vpr-binding prot 98.7 1.4E-08 3E-13 110.6 4.5 195 437-652 1099-1300(1516)
301 PF07433 DUF1513: Protein of u 98.7 2E-05 4.3E-10 79.2 26.6 182 445-637 56-279 (305)
302 KOG2695 WD40 repeat protein [G 98.7 6.6E-08 1.4E-12 95.2 8.5 163 484-654 217-387 (425)
303 KOG3914 WD repeat protein WDR4 98.6 4E-07 8.7E-12 91.9 12.3 159 482-653 66-233 (390)
304 PF15492 Nbas_N: Neuroblastoma 98.6 5.2E-05 1.1E-09 74.0 25.0 202 449-653 9-269 (282)
305 KOG4714 Nucleoporin [Nuclear s 98.5 7.3E-07 1.6E-11 84.8 11.1 198 481-697 39-255 (319)
306 KOG0882 Cyclophilin-related pe 98.5 1.3E-06 2.9E-11 89.1 13.4 252 438-700 8-309 (558)
307 COG5170 CDC55 Serine/threonine 98.5 1E-06 2.2E-11 85.6 12.1 217 478-699 26-312 (460)
308 KOG4714 Nucleoporin [Nuclear s 98.5 1E-06 2.2E-11 83.8 11.6 193 442-644 39-255 (319)
309 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00015 3.2E-09 69.6 25.8 140 387-550 24-166 (354)
310 PF06433 Me-amine-dh_H: Methyl 98.5 4.1E-05 8.9E-10 77.9 23.5 202 445-653 100-330 (342)
311 KOG0882 Cyclophilin-related pe 98.5 1E-06 2.2E-11 89.9 11.0 215 476-700 7-235 (558)
312 cd00216 PQQ_DH Dehydrogenases 98.4 0.0002 4.4E-09 79.8 28.3 289 387-706 62-434 (488)
313 KOG1920 IkappaB kinase complex 98.4 6E-05 1.3E-09 86.3 23.8 235 333-602 76-325 (1265)
314 KOG1275 PAB-dependent poly(A) 98.4 6.2E-06 1.3E-10 91.1 15.5 179 449-641 147-340 (1118)
315 KOG1920 IkappaB kinase complex 98.4 0.00023 5E-09 81.7 28.0 233 439-695 68-364 (1265)
316 KOG1645 RING-finger-containing 98.4 0.00011 2.3E-09 74.6 22.1 240 437-697 191-462 (463)
317 PF00400 WD40: WD domain, G-be 98.3 1.6E-06 3.4E-11 59.5 6.2 39 509-547 1-39 (39)
318 KOG2066 Vacuolar assembly/sort 98.3 2E-05 4.3E-10 86.4 17.5 187 480-696 41-233 (846)
319 cd00216 PQQ_DH Dehydrogenases 98.3 0.0015 3.4E-08 72.7 32.4 236 387-653 111-434 (488)
320 KOG2066 Vacuolar assembly/sort 98.2 1.8E-05 3.8E-10 86.8 14.9 185 438-643 38-233 (846)
321 KOG2114 Vacuolar assembly/sort 98.2 0.00011 2.4E-09 81.2 20.7 205 485-705 30-252 (933)
322 KOG2695 WD40 repeat protein [G 98.2 4.8E-06 1E-10 82.4 9.0 149 341-517 228-386 (425)
323 PF11768 DUF3312: Protein of u 98.2 0.00042 9.2E-09 74.4 24.1 110 439-550 205-330 (545)
324 PF00400 WD40: WD domain, G-be 98.2 6.6E-06 1.4E-10 56.4 6.3 38 468-505 1-39 (39)
325 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0053 1.1E-07 68.8 32.2 245 446-706 117-500 (527)
326 PRK02888 nitrous-oxide reducta 98.1 0.00057 1.2E-08 75.2 22.3 187 449-644 141-405 (635)
327 PF04053 Coatomer_WDAD: Coatom 98.1 0.00059 1.3E-08 73.9 22.4 223 374-644 32-263 (443)
328 KOG3617 WD40 and TPR repeat-co 98.1 7.5E-05 1.6E-09 82.0 14.6 99 449-549 27-131 (1416)
329 KOG3621 WD40 repeat-containing 98.1 0.00064 1.4E-08 74.0 21.5 279 373-699 32-356 (726)
330 PF14583 Pectate_lyase22: Olig 98.0 0.011 2.3E-07 61.7 29.2 268 333-642 43-380 (386)
331 PF14583 Pectate_lyase22: Olig 98.0 0.011 2.3E-07 61.7 29.1 282 380-697 41-382 (386)
332 PF08513 LisH: LisH; InterPro 98.0 8E-06 1.7E-10 50.3 3.2 27 129-155 1-27 (27)
333 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.029 6.3E-07 62.9 33.8 245 387-653 121-500 (527)
334 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.021 4.5E-07 55.2 28.9 309 338-698 24-353 (354)
335 KOG2114 Vacuolar assembly/sort 97.9 0.0011 2.5E-08 73.5 21.4 204 441-652 27-252 (933)
336 PF11768 DUF3312: Protein of u 97.9 0.0075 1.6E-07 65.0 27.0 114 571-698 206-331 (545)
337 KOG1645 RING-finger-containing 97.9 0.00048 1E-08 70.0 17.0 91 460-551 175-268 (463)
338 PF04053 Coatomer_WDAD: Coatom 97.9 0.0025 5.3E-08 69.2 23.5 220 440-699 33-265 (443)
339 PF00930 DPPIV_N: Dipeptidyl p 97.9 0.0053 1.2E-07 65.5 26.1 266 383-683 1-344 (353)
340 PF08596 Lgl_C: Lethal giant l 97.9 0.0039 8.4E-08 66.8 24.6 270 376-686 3-326 (395)
341 PF04841 Vps16_N: Vps16, N-ter 97.9 0.016 3.5E-07 62.9 28.6 168 440-624 81-270 (410)
342 KOG1275 PAB-dependent poly(A) 97.8 0.00037 8E-09 77.6 15.3 180 336-548 146-341 (1118)
343 KOG1008 Uncharacterized conser 97.8 6.1E-06 1.3E-10 88.0 1.1 204 479-697 57-276 (783)
344 PF00930 DPPIV_N: Dipeptidyl p 97.8 0.012 2.6E-07 62.8 26.0 242 330-587 47-344 (353)
345 KOG1008 Uncharacterized conser 97.8 2.1E-05 4.6E-10 84.0 4.6 196 438-643 55-275 (783)
346 PF04841 Vps16_N: Vps16, N-ter 97.8 0.021 4.5E-07 62.0 27.7 184 459-653 62-256 (410)
347 KOG3617 WD40 and TPR repeat-co 97.8 0.0013 2.8E-08 72.6 17.9 106 377-507 18-131 (1416)
348 smart00667 LisH Lissencephaly 97.7 3.6E-05 7.8E-10 50.8 3.6 32 127-158 2-33 (34)
349 COG0823 TolB Periplasmic compo 97.7 0.0018 3.8E-08 70.1 18.4 178 459-651 174-366 (425)
350 PRK02888 nitrous-oxide reducta 97.7 0.0058 1.3E-07 67.5 21.8 92 591-697 296-405 (635)
351 COG3386 Gluconolactonase [Carb 97.7 0.02 4.4E-07 59.0 24.7 185 440-633 66-275 (307)
352 KOG2659 LisH motif-containing 97.7 0.0001 2.2E-09 70.3 7.1 83 126-211 24-117 (228)
353 PF06433 Me-amine-dh_H: Methyl 97.7 0.092 2E-06 53.9 28.6 229 458-705 67-329 (342)
354 PF06977 SdiA-regulated: SdiA- 97.7 0.046 9.9E-07 54.5 25.7 203 368-596 17-247 (248)
355 KOG3621 WD40 repeat-containing 97.6 0.00054 1.2E-08 74.6 12.7 151 444-601 40-199 (726)
356 PF06977 SdiA-regulated: SdiA- 97.6 0.03 6.6E-07 55.7 23.9 198 437-640 19-247 (248)
357 COG0823 TolB Periplasmic compo 97.6 0.0032 7E-08 68.1 17.4 180 439-633 192-389 (425)
358 COG3391 Uncharacterized conser 97.5 0.047 1E-06 58.8 25.0 203 443-653 77-293 (381)
359 PRK13616 lipoprotein LpqB; Pro 97.4 0.02 4.2E-07 64.8 22.0 203 479-709 350-581 (591)
360 PF03178 CPSF_A: CPSF A subuni 97.4 0.04 8.6E-07 58.0 23.1 173 458-643 2-202 (321)
361 PF00780 CNH: CNH domain; Int 97.4 0.14 3E-06 52.4 26.7 223 449-701 7-260 (275)
362 PF00780 CNH: CNH domain; Int 97.4 0.2 4.4E-06 51.2 29.3 238 336-609 6-265 (275)
363 COG3490 Uncharacterized protei 97.4 0.032 7E-07 54.8 19.7 216 460-695 93-347 (366)
364 COG3391 Uncharacterized conser 97.3 0.39 8.5E-06 51.7 29.2 199 480-700 75-287 (381)
365 PF05096 Glu_cyclase_2: Glutam 97.3 0.098 2.1E-06 51.9 22.1 188 481-684 47-249 (264)
366 COG3386 Gluconolactonase [Carb 97.3 0.13 2.9E-06 53.1 24.2 204 457-685 46-274 (307)
367 PF08596 Lgl_C: Lethal giant l 97.2 0.075 1.6E-06 57.0 22.6 207 480-701 3-295 (395)
368 smart00668 CTLH C-terminal to 97.2 0.00043 9.4E-09 52.1 3.9 52 160-212 4-55 (58)
369 PF02897 Peptidase_S9_N: Proly 97.2 0.28 6.1E-06 53.6 27.6 241 376-648 125-409 (414)
370 PF03178 CPSF_A: CPSF A subuni 97.2 0.047 1E-06 57.4 20.6 180 499-697 2-203 (321)
371 PF08553 VID27: VID27 cytoplas 97.2 0.01 2.2E-07 68.0 16.1 132 457-598 503-646 (794)
372 KOG1897 Damage-specific DNA bi 97.1 0.95 2.1E-05 52.2 30.9 317 338-698 549-900 (1096)
373 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.025 5.3E-07 48.0 13.1 97 377-502 2-109 (111)
374 PF08553 VID27: VID27 cytoplas 97.0 0.04 8.6E-07 63.3 18.6 143 492-642 497-646 (794)
375 smart00320 WD40 WD40 repeats. 96.9 0.0029 6.2E-08 41.7 5.6 39 509-547 2-40 (40)
376 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.052 1.1E-06 46.0 13.5 97 442-544 2-109 (111)
377 KOG4499 Ca2+-binding protein R 96.8 0.16 3.4E-06 48.7 17.9 108 522-631 160-272 (310)
378 PRK13616 lipoprotein LpqB; Pro 96.8 0.093 2E-06 59.4 19.4 184 440-637 350-562 (591)
379 KOG4640 Anaphase-promoting com 96.7 0.0069 1.5E-07 65.5 9.5 93 479-580 21-115 (665)
380 TIGR03074 PQQ_membr_DH membran 96.7 0.2 4.2E-06 58.4 22.1 232 449-705 194-486 (764)
381 KOG2395 Protein involved in va 96.7 0.031 6.7E-07 59.4 13.7 132 457-599 355-500 (644)
382 PF02897 Peptidase_S9_N: Proly 96.7 1.4 3E-05 48.2 29.3 240 444-701 128-409 (414)
383 KOG2395 Protein involved in va 96.7 0.06 1.3E-06 57.3 15.3 144 491-642 348-499 (644)
384 KOG4441 Proteins containing BT 96.6 0.38 8.2E-06 54.6 22.7 101 449-551 381-501 (571)
385 smart00320 WD40 WD40 repeats. 96.5 0.0079 1.7E-07 39.5 5.6 38 468-505 2-40 (40)
386 KOG4640 Anaphase-promoting com 96.5 0.013 2.8E-07 63.4 9.3 90 439-529 20-115 (665)
387 PF05694 SBP56: 56kDa selenium 96.4 1.1 2.3E-05 47.7 22.9 183 449-632 141-392 (461)
388 PF05096 Glu_cyclase_2: Glutam 96.4 1.2 2.6E-05 44.4 23.2 183 442-632 47-249 (264)
389 COG3490 Uncharacterized protei 96.3 1.3 2.8E-05 44.0 21.7 214 482-706 71-320 (366)
390 KOG4441 Proteins containing BT 96.3 0.34 7.4E-06 54.9 20.2 223 458-707 301-555 (571)
391 PF14870 PSII_BNR: Photosynthe 96.3 1.6 3.5E-05 44.9 35.0 278 374-693 16-301 (302)
392 PHA02713 hypothetical protein; 96.1 0.37 8E-06 54.7 19.4 194 489-709 303-544 (557)
393 PF12894 Apc4_WD40: Anaphase-p 96.0 0.02 4.3E-07 40.6 5.5 34 668-703 14-47 (47)
394 KOG2079 Vacuolar assembly/sort 96.0 0.12 2.6E-06 59.6 14.4 106 441-548 91-202 (1206)
395 PF14727 PHTB1_N: PTHB1 N-term 96.0 3 6.6E-05 44.9 31.8 281 386-705 37-369 (418)
396 PHA02713 hypothetical protein; 95.9 0.53 1.1E-05 53.4 19.6 185 449-646 304-536 (557)
397 KOG2444 WD40 repeat protein [G 95.9 0.012 2.7E-07 55.9 5.1 104 583-697 71-178 (238)
398 PF05694 SBP56: 56kDa selenium 95.6 3 6.5E-05 44.4 21.4 129 457-587 221-390 (461)
399 PF15390 DUF4613: Domain of un 95.5 0.5 1.1E-05 51.4 15.9 145 439-599 19-186 (671)
400 COG3204 Uncharacterized protei 95.5 0.82 1.8E-05 45.7 16.1 170 515-696 81-263 (316)
401 PF10168 Nup88: Nuclear pore c 95.5 2.7 6E-05 48.7 22.9 72 479-550 85-180 (717)
402 KOG2444 WD40 repeat protein [G 95.5 0.024 5.3E-07 54.0 5.3 102 449-550 70-178 (238)
403 KOG2079 Vacuolar assembly/sort 95.4 0.059 1.3E-06 62.0 9.0 102 531-642 99-202 (1206)
404 COG1520 FOG: WD40-like repeat 95.3 2.3 4.9E-05 45.7 20.8 205 489-707 68-279 (370)
405 KOG1897 Damage-specific DNA bi 95.3 7.9 0.00017 45.1 32.7 309 335-697 593-943 (1096)
406 TIGR03074 PQQ_membr_DH membran 95.1 5.1 0.00011 47.0 23.9 186 449-651 260-485 (764)
407 COG4257 Vgb Streptogramin lyas 95.0 3.9 8.5E-05 40.5 18.8 201 481-699 64-265 (353)
408 PF14870 PSII_BNR: Photosynthe 95.0 5.2 0.00011 41.2 25.1 159 475-640 141-301 (302)
409 COG3204 Uncharacterized protei 94.9 4.8 0.0001 40.4 21.1 169 437-606 83-269 (316)
410 PF12894 Apc4_WD40: Anaphase-p 94.8 0.073 1.6E-06 37.7 5.0 34 613-647 11-44 (47)
411 PF12234 Rav1p_C: RAVE protein 94.7 0.73 1.6E-05 51.9 14.9 113 521-643 31-156 (631)
412 PF14655 RAB3GAP2_N: Rab3 GTPa 94.7 7.6 0.00016 41.9 27.8 89 613-705 307-407 (415)
413 PF10647 Gmad1: Lipoprotein Lp 94.7 2.4 5.2E-05 42.7 17.5 150 521-687 25-186 (253)
414 PF12234 Rav1p_C: RAVE protein 94.5 1.4 3E-05 49.7 16.5 114 572-696 31-156 (631)
415 PF10168 Nup88: Nuclear pore c 94.5 0.93 2E-05 52.5 15.7 91 613-706 84-189 (717)
416 PF14655 RAB3GAP2_N: Rab3 GTPa 94.3 9.2 0.0002 41.2 28.8 83 519-609 307-408 (415)
417 PF15390 DUF4613: Domain of un 94.2 2.5 5.5E-05 46.3 16.9 156 479-645 20-188 (671)
418 PF10647 Gmad1: Lipoprotein Lp 94.0 7.7 0.00017 39.1 21.8 146 480-635 25-187 (253)
419 PHA03098 kelch-like protein; P 93.9 2.8 6.1E-05 47.5 18.1 184 449-646 295-514 (534)
420 PF14727 PHTB1_N: PTHB1 N-term 93.5 5.1 0.00011 43.2 18.0 148 531-695 37-203 (418)
421 KOG2280 Vacuolar assembly/sort 93.5 5.1 0.00011 45.2 17.9 171 441-623 85-269 (829)
422 TIGR02604 Piru_Ver_Nterm putat 93.4 2.9 6.3E-05 44.8 16.2 149 520-687 14-204 (367)
423 KOG0396 Uncharacterized conser 93.4 0.16 3.5E-06 51.8 5.9 86 126-212 113-206 (389)
424 PRK13684 Ycf48-like protein; P 93.3 13 0.00027 39.3 22.2 154 478-641 172-329 (334)
425 PRK13684 Ycf48-like protein; P 93.2 13 0.00028 39.2 30.3 157 519-696 172-331 (334)
426 KOG4499 Ca2+-binding protein R 93.2 8.7 0.00019 37.3 22.0 233 457-712 36-303 (310)
427 KOG2377 Uncharacterized conser 93.1 1.5 3.2E-05 46.3 12.5 154 333-509 29-187 (657)
428 PRK10115 protease 2; Provision 92.7 25 0.00054 41.1 31.0 192 441-643 128-344 (686)
429 PHA03098 kelch-like protein; P 92.4 6.2 0.00014 44.7 18.0 101 449-551 390-513 (534)
430 PF05935 Arylsulfotrans: Aryls 92.2 5.7 0.00012 44.2 16.8 129 576-707 153-312 (477)
431 PF06588 Muskelin_N: Muskelin 92.1 0.09 2E-06 49.0 2.0 47 114-160 151-197 (199)
432 COG3823 Glutamine cyclotransfe 92.0 8.8 0.00019 36.5 14.8 180 444-631 50-247 (262)
433 KOG3616 Selective LIM binding 92.0 6.2 0.00013 44.2 15.9 163 333-510 22-196 (1636)
434 KOG2280 Vacuolar assembly/sort 92.0 22 0.00047 40.5 20.2 33 519-551 216-248 (829)
435 PF14761 HPS3_N: Hermansky-Pud 91.9 6.5 0.00014 37.8 14.2 152 532-696 29-214 (215)
436 PHA02790 Kelch-like protein; P 91.4 12 0.00025 41.8 18.3 97 449-550 363-471 (480)
437 PF13449 Phytase-like: Esteras 91.1 18 0.00039 38.0 18.5 174 520-696 20-249 (326)
438 TIGR03118 PEPCTERM_chp_1 conse 91.1 19 0.00042 36.6 24.7 205 442-653 25-289 (336)
439 TIGR02604 Piru_Ver_Nterm putat 91.0 8.4 0.00018 41.2 16.2 148 480-632 15-202 (367)
440 COG3823 Glutamine cyclotransfe 91.0 12 0.00027 35.6 14.7 179 491-684 58-247 (262)
441 PHA02790 Kelch-like protein; P 90.9 10 0.00023 42.2 17.4 181 449-645 272-472 (480)
442 PF05935 Arylsulfotrans: Aryls 90.9 24 0.00052 39.3 20.0 147 497-654 126-312 (477)
443 PF14781 BBS2_N: Ciliary BBSom 90.9 11 0.00024 33.3 13.6 111 484-606 4-132 (136)
444 COG5276 Uncharacterized conser 90.8 20 0.00042 36.2 27.8 267 336-643 95-369 (370)
445 KOG4460 Nuclear pore complex, 90.8 3.2 6.9E-05 44.7 12.0 89 614-706 104-208 (741)
446 KOG2247 WD40 repeat-containing 90.8 0.031 6.8E-07 58.9 -2.5 147 524-695 39-187 (615)
447 PF07569 Hira: TUP1-like enhan 90.8 1.1 2.4E-05 44.0 8.3 74 527-603 18-99 (219)
448 KOG3630 Nuclear pore complex, 90.8 3.4 7.4E-05 48.6 13.0 124 457-587 123-260 (1405)
449 COG1520 FOG: WD40-like repeat 90.6 27 0.00059 37.4 25.5 198 449-653 68-278 (370)
450 KOG3630 Nuclear pore complex, 90.2 1.5 3.2E-05 51.4 9.6 140 481-630 103-260 (1405)
451 PF03022 MRJP: Major royal jel 90.1 24 0.00052 36.2 17.9 168 459-631 35-253 (287)
452 TIGR03118 PEPCTERM_chp_1 conse 89.8 25 0.00054 35.8 21.4 205 331-553 28-283 (336)
453 PLN00033 photosystem II stabil 89.7 33 0.00071 37.0 19.8 151 482-640 242-396 (398)
454 COG5167 VID27 Protein involved 89.6 5.2 0.00011 43.0 12.3 138 450-599 480-632 (776)
455 COG5290 IkappaB kinase complex 89.5 8.1 0.00018 43.8 14.1 133 483-625 206-348 (1243)
456 PRK10115 protease 2; Provision 89.4 50 0.0011 38.7 32.2 239 375-646 127-397 (686)
457 PF10214 Rrn6: RNA polymerase 88.9 58 0.0012 38.7 28.5 166 476-644 77-277 (765)
458 PF08728 CRT10: CRT10; InterP 88.2 13 0.00028 42.6 15.1 170 449-642 49-245 (717)
459 PF07995 GSDH: Glucose / Sorbo 87.1 11 0.00024 39.7 13.3 112 572-689 3-136 (331)
460 TIGR03606 non_repeat_PQQ dehyd 87.1 22 0.00047 39.0 15.6 113 520-634 30-166 (454)
461 KOG1916 Nuclear protein, conta 86.7 0.8 1.7E-05 52.1 4.6 162 437-604 130-328 (1283)
462 PF08728 CRT10: CRT10; InterP 86.6 18 0.00039 41.5 15.1 106 442-548 103-245 (717)
463 KOG1916 Nuclear protein, conta 86.6 1.3 2.8E-05 50.5 6.1 68 486-553 243-327 (1283)
464 PLN00033 photosystem II stabil 86.3 53 0.0011 35.5 33.6 151 522-693 241-396 (398)
465 PF14761 HPS3_N: Hermansky-Pud 85.8 35 0.00076 33.0 15.0 119 575-698 22-165 (215)
466 PF07995 GSDH: Glucose / Sorbo 85.8 12 0.00026 39.4 12.8 108 521-635 3-135 (331)
467 PF07569 Hira: TUP1-like enhan 85.5 4.4 9.5E-05 39.8 8.7 75 621-698 18-97 (219)
468 PF13449 Phytase-like: Esteras 85.3 52 0.0011 34.5 22.4 151 479-630 20-231 (326)
469 KOG4460 Nuclear pore complex, 84.3 69 0.0015 35.1 19.7 72 480-551 105-200 (741)
470 PF10313 DUF2415: Uncharacteri 83.5 4.4 9.5E-05 28.0 5.3 32 614-645 1-35 (43)
471 PF10313 DUF2415: Uncharacteri 83.4 3.7 8E-05 28.4 4.9 31 520-550 1-34 (43)
472 KOG2817 Predicted E3 ubiquitin 83.3 4.6 9.9E-05 42.1 7.8 89 123-212 111-209 (394)
473 KOG2247 WD40 repeat-containing 83.2 0.23 5.1E-06 52.6 -1.4 135 482-629 38-175 (615)
474 KOG1900 Nuclear pore complex, 82.9 23 0.00049 42.9 14.1 146 494-644 94-273 (1311)
475 PF14781 BBS2_N: Ciliary BBSom 82.1 36 0.00078 30.2 12.7 117 526-651 5-133 (136)
476 COG5167 VID27 Protein involved 81.6 28 0.00061 37.7 12.9 142 491-643 482-632 (776)
477 KOG2377 Uncharacterized conser 81.0 26 0.00055 37.5 12.2 72 571-644 67-141 (657)
478 TIGR03606 non_repeat_PQQ dehyd 80.6 44 0.00094 36.7 14.6 55 571-625 30-90 (454)
479 PF12657 TFIIIC_delta: Transcr 80.0 13 0.00027 35.0 9.2 37 668-704 88-130 (173)
480 smart00564 PQQ beta-propeller 80.0 3.4 7.4E-05 26.3 3.8 26 679-704 7-32 (33)
481 PF09398 FOP_dimer: FOP N term 79.9 2.5 5.4E-05 33.8 3.6 44 109-159 6-49 (81)
482 COG5290 IkappaB kinase complex 79.7 59 0.0013 37.4 15.0 147 525-696 207-366 (1243)
483 KOG1896 mRNA cleavage and poly 79.4 95 0.0021 37.6 17.2 112 437-549 1095-1213(1366)
484 COG4257 Vgb Streptogramin lyas 78.0 80 0.0017 31.7 22.1 187 449-646 73-265 (353)
485 TIGR02276 beta_rpt_yvtn 40-res 77.3 9.3 0.0002 25.8 5.6 30 580-609 1-32 (42)
486 COG4590 ABC-type uncharacteriz 76.9 7.3 0.00016 41.3 6.9 197 508-723 209-423 (733)
487 PF08801 Nucleoporin_N: Nup133 76.6 70 0.0015 34.9 15.2 32 614-645 190-221 (422)
488 KOG2063 Vacuolar assembly/sort 76.5 1.6E+02 0.0034 35.1 18.2 245 380-652 20-277 (877)
489 KOG1900 Nuclear pore complex, 75.0 2.1E+02 0.0047 35.2 19.8 75 476-550 176-273 (1311)
490 PF07250 Glyoxal_oxid_N: Glyox 74.7 81 0.0018 31.4 13.4 143 544-700 49-201 (243)
491 PF11725 AvrE: Pathogenicity f 74.4 2.5E+02 0.0054 35.7 20.8 156 342-507 336-516 (1774)
492 COG5276 Uncharacterized conser 74.3 1E+02 0.0023 31.2 30.6 150 438-599 85-241 (370)
493 PF02333 Phytase: Phytase; In 73.7 1.3E+02 0.0028 32.1 24.9 200 384-607 66-299 (381)
494 PF10607 CLTH: CTLH/CRA C-term 73.6 3.9 8.5E-05 37.1 3.8 51 161-212 5-55 (145)
495 COG3292 Predicted periplasmic 73.4 1.6E+02 0.0034 32.9 17.9 271 374-691 164-442 (671)
496 PF07250 Glyoxal_oxid_N: Glyox 73.3 73 0.0016 31.7 12.7 144 461-608 49-206 (243)
497 PF12657 TFIIIC_delta: Transcr 73.2 15 0.00032 34.5 7.7 31 520-550 86-122 (173)
498 PF07676 PD40: WD40-like Beta 71.4 11 0.00025 25.0 4.8 29 373-401 7-38 (39)
499 PF10433 MMS1_N: Mono-function 71.1 1.8E+02 0.0039 32.6 22.8 229 449-701 222-481 (504)
500 PF10395 Utp8: Utp8 family; I 71.0 2E+02 0.0043 33.1 23.9 164 519-697 129-306 (670)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-59 Score=458.43 Aligned_cols=462 Identities=16% Similarity=0.230 Sum_probs=372.7
Q ss_pred CCcccchHHHHHHHHHHhhhhhhHHHHHHHhhhcccccc---chhhHHhhhcCChHHHHHHHhhccccccCcchhHHHHH
Q 004924 122 SFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD---INYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQ 198 (723)
Q Consensus 122 ~~~~~~~~evirlI~q~L~e~G~~~s~~~L~~Es~i~~~---~~~l~~~i~~G~w~~~~~~l~~l~~~~~~~~~~~~~~~ 198 (723)
++--..+.|++|+++|+|+++||.+|+..||.|+|+.+. ...|.++|+.|+|++++..+..+...++.+...++|+
T Consensus 11 ~k~likk~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~de~~~~ea~fL- 89 (519)
T KOG0293|consen 11 SKGLIKKGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFEDERNRKEAMFL- 89 (519)
T ss_pred hhceeccchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcchhhhHHHHHH-
Confidence 333357889999999999999999999999999999983 8999999999999999999998866667788899999
Q ss_pred HHHHHHHHHHhhcC-----------CCccchh-hhhhHHHHHHHH---------------HhhCcccccccCC---CCC-
Q 004924 199 IQRQKYLEAVDRQQ-----------KLPSDFA-ERAHLFDDFKVL---------------VERNPMLQDKLKF---PSM- 247 (723)
Q Consensus 199 l~~q~~le~l~~~e-----------~~p~~~~-~~~~~l~~~~~~---------------~~~~~~l~~~l~~---~~~- 247 (723)
+.+|+|||++..+. -.++++. ++.|.+.+.+.. ...|..|.++++. |.+
T Consensus 90 v~kQ~fLEf~k~~~is~al~~l~~~~~~lr~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~il 169 (519)
T KOG0293|consen 90 VNKQIFLEFLKTGSISHALPVLRNPVLYLRKNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNIL 169 (519)
T ss_pred HHHHHHHHHHhhccHhhhhHhhhcchhhhhhhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhc
Confidence 99999999998773 2334444 566666654432 2234555666643 333
Q ss_pred -ChHHHHHHHHHhhcccccccccCCCCCCCCCccccCCCcccccccccccccCCCCCCCcceeeccCCCCCCceeeeCCC
Q 004924 248 -DKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNN 326 (723)
Q Consensus 248 -p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~h~~v~s~~~~~~~ 326 (723)
|++||++|++||+.+|+..|. |||.-.. ++ ++.++.
T Consensus 170 lP~rRLehLl~qAv~~Q~d~cv--yhnslds-vs----------------------------------------ll~Dh~ 206 (519)
T KOG0293|consen 170 LPKRRLEHLLEQAVKYQRDSCV--YHNSLDS-VS----------------------------------------LLSDHF 206 (519)
T ss_pred CChHHHHHHHHHHHHHHHhHhH--Hhcccch-hh----------------------------------------hhhhcc
Confidence 999999999999999999998 8885211 11 455555
Q ss_pred cccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCC
Q 004924 327 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 406 (723)
Q Consensus 327 ~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~ 406 (723)
|... +.| ..+.+ + +.. |+++||.+.||++|+||||++.|.+..+|.+..
T Consensus 207 c~~~--qip------------------------~qt~q-i-l~~--htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~- 255 (519)
T KOG0293|consen 207 CGRL--QIP------------------------SQTWQ-I-LQD--HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVY- 255 (519)
T ss_pred cCcc--cCC------------------------chhhh-h-Hhh--CCCcEEEEEEcCCCeeEeeccCCceEEEEEEec-
Confidence 4444 332 11111 1 333 999999999999999999999999999999752
Q ss_pred cccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEe-CCCCCeE
Q 004924 407 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIAT 482 (723)
Q Consensus 407 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~-~~~~~v~ 482 (723)
|.. -++.+++. +|..+|..+.|| ++++++|+ +..+.+||+.+|.+...+. ++...+.
T Consensus 256 ----------------d~~-~kl~~tlv--gh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~ 316 (519)
T KOG0293|consen 256 ----------------DVH-FKLKKTLV--GHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVS 316 (519)
T ss_pred ----------------Ccc-eeeeeeee--cccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcc
Confidence 221 12233333 799999999999 88999998 8999999999999988886 5577899
Q ss_pred EEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCc-CCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeee
Q 004924 483 YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 560 (723)
Q Consensus 483 ~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~-~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~ 560 (723)
+++|.||| .+++|+.|+++..||++ |+.+..+++- ...|.+++.++||+++++.+.|..|++++..+... ..
T Consensus 317 sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d-----r~ 390 (519)
T KOG0293|consen 317 SCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD-----RG 390 (519)
T ss_pred eeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh-----hc
Confidence 99999999 99999999999999987 5666667663 35699999999999999999999999999987321 11
Q ss_pred eeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEee-CCcEEEEEeCCCcEE
Q 004924 561 SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVK 638 (723)
Q Consensus 561 ~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~sgs~dg~I~ 638 (723)
+...+ .+|++++.|.||+++++. .+..|++||++..+.+..+.++.....+..-||.- +..++++||+|+.||
T Consensus 391 -lise~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvy 465 (519)
T KOG0293|consen 391 -LISEE----QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVY 465 (519)
T ss_pred -ccccc----CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEE
Confidence 12223 689999999999999996 89999999999988999998776677888889974 558999999999999
Q ss_pred EEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCC
Q 004924 639 VFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 639 iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
||+..+|+++.++.+ | ...++ +|+|+|.+..++|+||+||+||||.+...
T Consensus 466 IWhr~sgkll~~LsG-------H-s~~vN--cVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 466 IWHRISGKLLAVLSG-------H-SKTVN--CVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred EEEccCCceeEeecC-------C-cceee--EEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 999999999999974 3 34455 99999999999999999999999998654
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-59 Score=446.58 Aligned_cols=460 Identities=20% Similarity=0.333 Sum_probs=371.0
Q ss_pred cchHHHHHHHHHHhhhhhhHHHHHHHhhhcccccc----chhhHHhhhcCChHHHHHHHhhccccccCcchhHHHHHHHH
Q 004924 126 ETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD----INYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQR 201 (723)
Q Consensus 126 ~~~~evirlI~q~L~e~G~~~s~~~L~~Es~i~~~----~~~l~~~i~~G~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~ 201 (723)
..+.+|||||.|||+|+.+.+++++||+|+++++| ++.|.+.|.+|+||.+++.+.+| .++..+++++||
T Consensus 5 iessdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYE 78 (508)
T KOG0275|consen 5 IESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYE 78 (508)
T ss_pred eecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHH
Confidence 34568999999999999999999999999999997 89999999999999999999999 889999999999
Q ss_pred HHHHHHHhhcC-------------------CCccchh-----------hhhhHHHHHHHHHhhCccccccc--CCCCCCh
Q 004924 202 QKYLEAVDRQQ-------------------KLPSDFA-----------ERAHLFDDFKVLVERNPMLQDKL--KFPSMDK 249 (723)
Q Consensus 202 q~~le~l~~~e-------------------~~p~~~~-----------~~~~~l~~~~~~~~~~~~l~~~l--~~~~~p~ 249 (723)
|..||++|.+| .+|++|. +..+.+.+. ..+++|..+++.+ ++..+||
T Consensus 79 qivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~ds-sKEkrRa~IAQ~ls~EV~VVpp 157 (508)
T KOG0275|consen 79 QIVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGDS-SKEKRRAVIAQALSGEVHVVPP 157 (508)
T ss_pred HHHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCcc-hHHHHHHHHHHHhcCceEEcCh
Confidence 99999999986 4566553 233333331 2244566677777 5577799
Q ss_pred HHHHHHHHHhhcccccccccCCCCCCCCCccccCCCcccccccccccccCCCCCCCcceeeccCCCCCCceeeeCCCccc
Q 004924 250 SRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSR 329 (723)
Q Consensus 250 ~rL~~ll~qa~~~q~~~~~~~~~~~~~~~~s~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~h~~v~s~~~~~~~~~~ 329 (723)
+||+.||.||++||. ..+++|+.. .+|+ || |.+... ..
T Consensus 158 SRLlaLlGQaLKWQq--HQGLLPPGt-------~iDL---FR-------------GkAA~K-----------------~~ 195 (508)
T KOG0275|consen 158 SRLLALLGQALKWQQ--HQGLLPPGT-------TIDL---FR-------------GKAAMK-----------------DQ 195 (508)
T ss_pred HHHHHHHHHHhhhHh--hcCCCCCCc-------eeee---cc-------------chhhhh-----------------hh
Confidence 999999999999999 777788875 2332 33 111100 00
Q ss_pred ccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCccc
Q 004924 330 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 409 (723)
Q Consensus 330 ~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~ 409 (723)
..+..| +...+.+.+ +..+.+.|..|||||+||++|+.||.|.+||..+
T Consensus 196 ~Ee~~P------------------------t~l~r~IKF---g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~---- 244 (508)
T KOG0275|consen 196 EEERYP------------------------TQLARSIKF---GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTT---- 244 (508)
T ss_pred Hhhhch------------------------HHhhhheec---ccccchhheeeCCCCceEeeccccceeeeehhcc----
Confidence 111122 122222323 2567889999999999999999999999999885
Q ss_pred ccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEe-CCCCCeEEEE
Q 004924 410 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFI 485 (723)
Q Consensus 410 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~-~~~~~v~~l~ 485 (723)
|+...... |+.....++ +..+|.|+.|+ ...+|+|+ ||.|+||.+.+|.|++.+. .|...|+|+.
T Consensus 245 -GKlrKDLk---YQAqd~fMM-------md~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~ 313 (508)
T KOG0275|consen 245 -GKLRKDLK---YQAQDNFMM-------MDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLS 313 (508)
T ss_pred -chhhhhhh---hhhhcceee-------cccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEE
Confidence 44333332 444444444 78999999999 77899999 9999999999999999998 9999999999
Q ss_pred EcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeec
Q 004924 486 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT 564 (723)
Q Consensus 486 ~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~ 564 (723)
|+.|+ .+++++.|.++++..+.+|++++.++||.+.|+...|.+||..+++++.||+|++|+.+++++... +..
T Consensus 314 FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~T-----fk~ 388 (508)
T KOG0275|consen 314 FSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLST-----FKP 388 (508)
T ss_pred EccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhh-----ccC
Confidence 99999 999999999999999999999999999999999999999999999999999999999999655433 222
Q ss_pred CCCCCCCCeEEEEEccCC-CEEEEE-cCCcEEEEECCCCceeEEecCCC-CCCCeEEEEEeeCCcEEEEEeCCCcEEEEE
Q 004924 565 GLVPETTIVNHIQFHPDQ-IHLLSI-HEGQIDVYEAPTLNHTSQLVPDK-MDLPITYATYSCDGKCIYVSCKSGHVKVFD 641 (723)
Q Consensus 565 ~~~~~~~~v~~l~~spdg-~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~-h~~~v~~l~~spdg~~l~sgs~dg~I~iwd 641 (723)
.... .+|.++..-|.+ ..+++| ..++|+|.++ .|+.++.+..+. ..+...+++.||.|.++++.++|+.++.|.
T Consensus 389 ~~~d--~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~ 465 (508)
T KOG0275|consen 389 LGTD--YPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFS 465 (508)
T ss_pred CCCc--ccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEE
Confidence 2111 678888888765 556665 7789999999 688888886543 256788899999999999999999999999
Q ss_pred CCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEec
Q 004924 642 TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 695 (723)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~ 695 (723)
+.+|++...+..+ .. .++.++.|| ..+.+|+-+.||.+++|.+
T Consensus 466 ~~sG~LE~tl~Vh--------Ek--dvIGl~HHP-HqNllAsYsEDgllKLWkp 508 (508)
T KOG0275|consen 466 VLSGKLERTLPVH--------EK--DVIGLTHHP-HQNLLASYSEDGLLKLWKP 508 (508)
T ss_pred eecCceeeeeecc--------cc--cccccccCc-ccchhhhhcccchhhhcCC
Confidence 9999999988754 22 255899999 7899999999999999964
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-49 Score=383.84 Aligned_cols=313 Identities=20% Similarity=0.259 Sum_probs=273.5
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCccccc
Q 004924 332 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 411 (723)
Q Consensus 332 ~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g 411 (723)
.|+|+|+.+|+|+.|.++|+||+.+. .... +..+ |...|.|++|||||+.||+|+.||+|++||..++.. .|
T Consensus 122 ~fsp~g~~l~tGsGD~TvR~WD~~Te----Tp~~-t~Kg--H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~-~g 193 (480)
T KOG0271|consen 122 QFSPTGSRLVTGSGDTTVRLWDLDTE----TPLF-TCKG--HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ-IG 193 (480)
T ss_pred EecCCCceEEecCCCceEEeeccCCC----Ccce-eecC--CccEEEEEEECCCcchhhccccCCeEEEecCCCCCc-cc
Confidence 38899999999999999999999852 2222 2444 999999999999999999999999999998765433 11
Q ss_pred ccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-------CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEE
Q 004924 412 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-------GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATY 483 (723)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-------~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~ 483 (723)
.. + .+|...|++++|. .++||+++ ||.|+|||+..+.++..+.+|..+|+|
T Consensus 194 ~~----------------l-----~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTC 252 (480)
T KOG0271|consen 194 RA----------------L-----RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTC 252 (480)
T ss_pred cc----------------c-----cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEE
Confidence 11 1 1799999999997 56899999 999999999999999999999999999
Q ss_pred EEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEc-----------CCC---------------------
Q 004924 484 FILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS-----------LSL--------------------- 531 (723)
Q Consensus 484 l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~s-----------pdg--------------------- 531 (723)
+.|--+|++++|+.|++|++|+...|.+.+.++||...|+.++.+ |.+
T Consensus 253 vrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~ 332 (480)
T KOG0271|consen 253 VRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL 332 (480)
T ss_pred EEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhh
Confidence 999888899999999999999999999999999999999999876 223
Q ss_pred ----CEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEE
Q 004924 532 ----NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQ 606 (723)
Q Consensus 532 ----~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~ 606 (723)
..+++|+.|.++.+|+.... .+++. -..+|. .-|+.+.||||++++++ +.|..|++||.++|+.+.+
T Consensus 333 ~~~~erlVSgsDd~tlflW~p~~~----kkpi~-rmtgHq---~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~las 404 (480)
T KOG0271|consen 333 KDSGERLVSGSDDFTLFLWNPFKS----KKPIT-RMTGHQ---ALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLAS 404 (480)
T ss_pred ccCcceeEEecCCceEEEeccccc----ccchh-hhhchh---hheeeEEECCCccEEEEeecccceeeeeCCCcchhhh
Confidence 35999999999999987652 24444 345666 78999999999999999 6999999999999999999
Q ss_pred ecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEEC
Q 004924 607 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 686 (723)
Q Consensus 607 ~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~ 686 (723)
+. +|-..|+.++||.|.++|++|+.|.++++|++++.++...+. || .+.|+ ++.|+| ||..+++|+.
T Consensus 405 fR--GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp-------Gh-~DEVf--~vDwsp-DG~rV~sggk 471 (480)
T KOG0271|consen 405 FR--GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP-------GH-ADEVF--AVDWSP-DGQRVASGGK 471 (480)
T ss_pred hh--hccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCC-------CC-CceEE--EEEecC-CCceeecCCC
Confidence 97 479999999999999999999999999999999999888776 43 55677 999999 9999999999
Q ss_pred CCcEEEEe
Q 004924 687 NGRVHVIE 694 (723)
Q Consensus 687 Dg~v~iWd 694 (723)
|..+++|.
T Consensus 472 dkv~~lw~ 479 (480)
T KOG0271|consen 472 DKVLRLWR 479 (480)
T ss_pred ceEEEeec
Confidence 99999995
No 4
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-44 Score=360.33 Aligned_cols=309 Identities=16% Similarity=0.205 Sum_probs=260.0
Q ss_pred EEEEEeCCCeEEEEeecccCCCCcee-EEecC--------CCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCccc
Q 004924 339 SAVCAKSLEKSVNLKLQLINEPSECR-TLLLP--------DNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 409 (723)
Q Consensus 339 ~la~~s~dg~v~iw~~~~~~~~~~~~-~~~l~--------~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~ 409 (723)
.+++++.|-+.++|++... ...+. +..|. .......|++++|+.+|..||+|+.||.++||+...
T Consensus 193 llasg~~~s~ari~~l~e~--~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G---- 266 (524)
T KOG0273|consen 193 LLASGSGDSTARIWNLLEN--SNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDG---- 266 (524)
T ss_pred hhhccCCccceeeeeehhh--ccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCc----
Confidence 6888999999999998741 11111 01011 111357899999999999999999999999999653
Q ss_pred ccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEE
Q 004924 410 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 486 (723)
Q Consensus 410 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~ 486 (723)
.....+. .|+++|.++.|+ |+||++++ |+++.+||..+|+..+.+.-|..+...+.|
T Consensus 267 --~l~~tl~------------------~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW 326 (524)
T KOG0273|consen 267 --NLISTLG------------------QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDW 326 (524)
T ss_pred --hhhhhhh------------------ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEE
Confidence 2222221 699999999999 99999999 999999999999999999988888678899
Q ss_pred cCCCeEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCC
Q 004924 487 LPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 566 (723)
Q Consensus 487 ~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~ 566 (723)
-.+..|++++.|+.|+|+.+....++.++.+|.+.|+++.|+|.|..|++++.|+++++|...... ... -...|
T Consensus 327 ~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~-----~~~-~l~~H 400 (524)
T KOG0273|consen 327 QSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN-----SVH-DLQAH 400 (524)
T ss_pred ecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc-----chh-hhhhh
Confidence 766689999999999999999999999999999999999999999999999999999999987632 222 23356
Q ss_pred CCCCCCeEEEEEccCC---------CEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCc
Q 004924 567 VPETTIVNHIQFHPDQ---------IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH 636 (723)
Q Consensus 567 ~~~~~~v~~l~~spdg---------~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~ 636 (723)
. ..|..+.|+|+| ..+++ +.|++|++||+..+.++.++. .|..+|.+++|||+|+|+|+|+.||.
T Consensus 401 s---kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~--kH~~pVysvafS~~g~ylAsGs~dg~ 475 (524)
T KOG0273|consen 401 S---KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM--KHQEPVYSVAFSPNGRYLASGSLDGC 475 (524)
T ss_pred c---cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec--cCCCceEEEEecCCCcEEEecCCCCe
Confidence 5 689999999975 34666 699999999999999999986 57999999999999999999999999
Q ss_pred EEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecC
Q 004924 637 VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 637 I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~ 696 (723)
|.+|+.+++++.+.+.. .+.|. .++|+. +|+.|..+-.||.+++-|+.
T Consensus 476 V~iws~~~~~l~~s~~~---------~~~If--el~Wn~-~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 476 VHIWSTKTGKLVKSYQG---------TGGIF--ELCWNA-AGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eEeccccchheeEeecC---------CCeEE--EEEEcC-CCCEEEEEecCCCceEEEec
Confidence 99999999999998863 33345 999999 88999999999999998874
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-41 Score=328.63 Aligned_cols=290 Identities=18% Similarity=0.249 Sum_probs=246.5
Q ss_pred cCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEE
Q 004924 368 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 447 (723)
Q Consensus 368 l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 447 (723)
++| |.+.|.|++|+|+|.+|++|+.|.++|+||..+... +.+.. +|...|.|++|
T Consensus 111 ~~G--H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp---------------------~~t~K--gH~~WVlcvaw 165 (480)
T KOG0271|consen 111 IAG--HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP---------------------LFTCK--GHKNWVLCVAW 165 (480)
T ss_pred cCC--CCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc---------------------ceeec--CCccEEEEEEE
Confidence 555 999999999999999999999999999999764321 11111 79999999999
Q ss_pred e--CCEEEEEe-CCcEEEEEcCCCcEE-EEEeCCCCCeEEEEEcC-----CC-eEEEEECCCcEEEEeCCCCcEEEEEcC
Q 004924 448 R--GSHLFSAS-GGKISIFSLETFQTL-ATFANPPPIATYFILLP-----QD-LFAFGFDDSSILVHCPCTKKTKAKLKG 517 (723)
Q Consensus 448 s--~~~l~s~s-dg~I~vwd~~~~~~~-~~~~~~~~~v~~l~~~p-----~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~ 517 (723)
+ |+.||+|+ ||+|++||.++|+++ +.+.+|...|++++|.| .. ++|+++.||.|+|||+..++++..+.+
T Consensus 166 sPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg 245 (480)
T KOG0271|consen 166 SPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG 245 (480)
T ss_pred CCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc
Confidence 9 99999999 999999999998765 57889999999999976 34 899999999999999999999999999
Q ss_pred cCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEc-----------cCCC---
Q 004924 518 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH-----------PDQI--- 583 (723)
Q Consensus 518 ~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~s-----------pdg~--- 583 (723)
|+.+|+|+.|--+| ++++|+.|++|++|+...|. ... ...+|. ..|+.++.+ |.++
T Consensus 246 HT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~-----~~r-~lkGHa---hwvN~lalsTdy~LRtgaf~~t~~~~~ 315 (480)
T KOG0271|consen 246 HTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGK-----LCR-ELKGHA---HWVNHLALSTDYVLRTGAFDHTGRKPK 315 (480)
T ss_pred CccceEEEEEcCCc-eEEecCCCceEEEEEccchh-----HHH-hhcccc---hheeeeeccchhhhhccccccccccCC
Confidence 99999999998766 89999999999999998863 233 455676 688888776 3233
Q ss_pred ----------------------EEEEE-cCCcEEEEECCC-CceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEE
Q 004924 584 ----------------------HLLSI-HEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV 639 (723)
Q Consensus 584 ----------------------~l~~s-~dg~I~vwd~~~-~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~i 639 (723)
.++++ .|.++.+|+... .+++.... +|..-|+.+.||||++++|+++.|..|++
T Consensus 316 ~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmt--gHq~lVn~V~fSPd~r~IASaSFDkSVkL 393 (480)
T KOG0271|consen 316 SFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMT--GHQALVNHVSFSPDGRYIASASFDKSVKL 393 (480)
T ss_pred ChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhh--chhhheeeEEECCCccEEEEeecccceee
Confidence 37874 778999999754 34555554 57999999999999999999999999999
Q ss_pred EECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCceeeecC
Q 004924 640 FDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKL 705 (723)
Q Consensus 640 wd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~w~~~ 705 (723)
|+-.+|+.+.++.+| -..|| .++|+. |..+|++||.|.+++||++.+.+-....|
T Consensus 394 W~g~tGk~lasfRGH--------v~~VY--qvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLp 448 (480)
T KOG0271|consen 394 WDGRTGKFLASFRGH--------VAAVY--QVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLP 448 (480)
T ss_pred eeCCCcchhhhhhhc--------cceeE--EEEecc-CccEEEEcCCCceEEEEEeeeeeecccCC
Confidence 999999999999743 45677 999999 89999999999999999998876544444
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.3e-41 Score=330.71 Aligned_cols=278 Identities=15% Similarity=0.200 Sum_probs=250.9
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-C--
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G-- 449 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~-- 449 (723)
-+.+|..+.||+|++.|||||-+|.++||+..+. . .+.++. +|...|.++.|+ +
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~-----~----------------~~~~l~--gH~~~v~~~~fhP~~~ 230 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC-----N----------------LLQTLR--GHTSRVGAAVFHPVDS 230 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCc-----c----------------eeEEEe--ccccceeeEEEccCCC
Confidence 5789999999999999999999999999997742 1 112222 899999999999 3
Q ss_pred -CEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEE
Q 004924 450 -SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 526 (723)
Q Consensus 450 -~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~ 526 (723)
..+|+|+ ||++++|++.+...+..+.+|...|..++|+|+| +|++++.|.+-++||++++..+....||...|.+++
T Consensus 231 ~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~ia 310 (459)
T KOG0272|consen 231 DLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIA 310 (459)
T ss_pred ccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeE
Confidence 4799999 9999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeE
Q 004924 527 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTS 605 (723)
Q Consensus 527 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~ 605 (723)
|+|||..+++|+.|..-+|||+++| .++. +..+|. .+|.+++|+|+|..+++ |.|++++|||++..+++.
T Consensus 311 f~~DGSL~~tGGlD~~~RvWDlRtg-----r~im-~L~gH~---k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly 381 (459)
T KOG0272|consen 311 FQPDGSLAATGGLDSLGRVWDLRTG-----RCIM-FLAGHI---KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY 381 (459)
T ss_pred ecCCCceeeccCccchhheeecccC-----cEEE-Eecccc---cceeeEeECCCceEEeecCCCCcEEEeeecccccce
Confidence 9999999999999999999999997 4455 566788 89999999999999999 599999999999888877
Q ss_pred EecCCCCCCCeEEEEEee-CCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEE
Q 004924 606 QLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 684 (723)
Q Consensus 606 ~~~~~~h~~~v~~l~~sp-dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 684 (723)
++. +|..-|+.++|+| .|.+|++++.|++++||...++.+++.+.+ | .+. |.++..+| ++..++|+
T Consensus 382 ~ip--AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG-------H-e~k--V~s~Dis~-d~~~i~t~ 448 (459)
T KOG0272|consen 382 TIP--AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG-------H-EGK--VISLDISP-DSQAIATS 448 (459)
T ss_pred ecc--cccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcC-------C-ccc--eEEEEecc-CCceEEEe
Confidence 765 6899999999998 788999999999999999999999999974 3 334 55999999 99999999
Q ss_pred ECCCcEEEEec
Q 004924 685 LTNGRVHVIEP 695 (723)
Q Consensus 685 s~Dg~v~iWd~ 695 (723)
+.|.++++|..
T Consensus 449 s~DRT~KLW~~ 459 (459)
T KOG0272|consen 449 SFDRTIKLWRP 459 (459)
T ss_pred ccCceeeeccC
Confidence 99999999963
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.2e-39 Score=321.71 Aligned_cols=270 Identities=19% Similarity=0.171 Sum_probs=240.5
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCC--CCEEEEEECCCcEEEEeccCCcc
Q 004924 331 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATHKLWKWQSNKQ 408 (723)
Q Consensus 331 ~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspd--g~~las~s~dg~i~iWd~~~~~~ 408 (723)
..||+|++.+|||+.+|.+++|+..+ ....+. |.| |.+.|.++.|+|. +..+|||+.||++++|++.+...
T Consensus 181 ~~fS~ds~~laT~swsG~~kvW~~~~----~~~~~~-l~g--H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~ 253 (459)
T KOG0272|consen 181 CSFSRDSKHLATGSWSGLVKVWSVPQ----CNLLQT-LRG--HTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP 253 (459)
T ss_pred eEeecCCCeEEEeecCCceeEeecCC----cceeEE-Eec--cccceeeEEEccCCCccceeeeccCCceeeeccCCCcc
Confidence 33899999999999999999999984 333333 555 9999999999996 67899999999999999774211
Q ss_pred cccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEE
Q 004924 409 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI 485 (723)
Q Consensus 409 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~ 485 (723)
+..+ .+|...|..++|+ |++|++++ |.+-++||+.++..+....+|...|.+++
T Consensus 254 ---------------------l~~l--~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~ia 310 (459)
T KOG0272|consen 254 ---------------------LQDL--EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIA 310 (459)
T ss_pred ---------------------hhhh--hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeE
Confidence 1111 1799999999999 99999999 99999999999999988899999999999
Q ss_pred EcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeec
Q 004924 486 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT 564 (723)
Q Consensus 486 ~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~ 564 (723)
|.||| .+++|+.|..-+|||+++|+++..+.+|..+|.+++|+|+|..+++|+.|++++|||++.. ..+.++ .
T Consensus 311 f~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r-----~~ly~i-p 384 (459)
T KOG0272|consen 311 FQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR-----SELYTI-P 384 (459)
T ss_pred ecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc-----ccceec-c
Confidence 99999 9999999999999999999999999999999999999999999999999999999999983 446644 4
Q ss_pred CCCCCCCCeEEEEEcc-CCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEE
Q 004924 565 GLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 641 (723)
Q Consensus 565 ~~~~~~~~v~~l~~sp-dg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd 641 (723)
+|. .-|+.+.|+| .|.+|++ +.|+++++|...+..+++.+. +|.+.|.++.+++|+.++++++.|.++++|.
T Consensus 385 AH~---nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa--GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 385 AHS---NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA--GHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccc---chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhc--CCccceEEEEeccCCceEEEeccCceeeecc
Confidence 565 7899999999 6788888 699999999999999999987 5799999999999999999999999999995
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.8e-37 Score=291.59 Aligned_cols=292 Identities=15% Similarity=0.167 Sum_probs=249.5
Q ss_pred cceeeccCCCC-CCceeeeCCCcccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeC
Q 004924 306 RPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 384 (723)
Q Consensus 306 ~~~~~~~~h~~-v~s~~~~~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fsp 384 (723)
...++++||-+ |+++- +++|+++|++++.||.+.|||..+ ..+...+.+| ...|..++|+|
T Consensus 46 ~~rr~LkGH~~Ki~~~~-----------ws~Dsr~ivSaSqDGklIvWDs~T---tnK~haipl~----s~WVMtCA~sP 107 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMD-----------WSTDSRRIVSASQDGKLIVWDSFT---TNKVHAIPLP----SSWVMTCAYSP 107 (343)
T ss_pred eeEEEecccccceeeeE-----------ecCCcCeEEeeccCCeEEEEEccc---ccceeEEecC----ceeEEEEEECC
Confidence 34477788888 77643 788999999999999999999886 4455555554 68999999999
Q ss_pred CCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-CCcEEE
Q 004924 385 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISI 462 (723)
Q Consensus 385 dg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-dg~I~v 462 (723)
.|+++|+|+-|+...||++.+... .|... +.+ ...+|.+.+.|+.|- +..|++++ |.++.+
T Consensus 108 Sg~~VAcGGLdN~Csiy~ls~~d~-~g~~~--------------v~r--~l~gHtgylScC~f~dD~~ilT~SGD~TCal 170 (343)
T KOG0286|consen 108 SGNFVACGGLDNKCSIYPLSTRDA-EGNVR--------------VSR--ELAGHTGYLSCCRFLDDNHILTGSGDMTCAL 170 (343)
T ss_pred CCCeEEecCcCceeEEEecccccc-cccce--------------eee--eecCccceeEEEEEcCCCceEecCCCceEEE
Confidence 999999999999999999874322 11111 001 112799999999999 88899998 999999
Q ss_pred EEcCCCcEEEEEeCCCCCeEEEEEcC-CC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCC
Q 004924 463 FSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD 540 (723)
Q Consensus 463 wd~~~~~~~~~~~~~~~~v~~l~~~p-~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~d 540 (723)
||+++|+.+..|.+|.+.|.+++++| ++ .+++|+-|+..++||++.+.+++.|.+|.+.|+++.|.|+|.-+++|+.|
T Consensus 171 WDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD 250 (343)
T KOG0286|consen 171 WDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDD 250 (343)
T ss_pred EEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCC
Confidence 99999999999999999999999999 77 99999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecCCCCCCCeEEE
Q 004924 541 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYA 619 (723)
Q Consensus 541 g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l 619 (723)
++.++||++....+.. +. |.....+|++++||..|++|.+| .|.++.+||.-.++.+..+. +|...|.++
T Consensus 251 ~tcRlyDlRaD~~~a~-----ys--~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~--GHeNRvScl 321 (343)
T KOG0286|consen 251 ATCRLYDLRADQELAV-----YS--HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA--GHENRVSCL 321 (343)
T ss_pred ceeEEEeecCCcEEee-----ec--cCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee--ccCCeeEEE
Confidence 9999999998543222 11 11112689999999999999996 88999999998888887776 579999999
Q ss_pred EEeeCCcEEEEEeCCCcEEEEE
Q 004924 620 TYSCDGKCIYVSCKSGHVKVFD 641 (723)
Q Consensus 620 ~~spdg~~l~sgs~dg~I~iwd 641 (723)
..+|||.-+++|+.|..++||.
T Consensus 322 ~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 322 GVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EECCCCcEEEecchhHheeecC
Confidence 9999999999999999999994
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.9e-37 Score=289.93 Aligned_cols=282 Identities=16% Similarity=0.207 Sum_probs=249.4
Q ss_pred cCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEE
Q 004924 368 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 447 (723)
Q Consensus 368 l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 447 (723)
|.| |.+.|.++.|++|+++++++|.||.+.|||.-+..+ .. .+. -....|..++|
T Consensus 51 LkG--H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK-----~h-------------aip-----l~s~WVMtCA~ 105 (343)
T KOG0286|consen 51 LKG--HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK-----VH-------------AIP-----LPSSWVMTCAY 105 (343)
T ss_pred ecc--cccceeeeEecCCcCeEEeeccCCeEEEEEcccccc-----ee-------------EEe-----cCceeEEEEEE
Confidence 555 999999999999999999999999999999764222 11 111 25678999999
Q ss_pred e--CCEEEEEe-CCcEEEEEcCCC------cEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEcCc
Q 004924 448 R--GSHLFSAS-GGKISIFSLETF------QTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGH 518 (723)
Q Consensus 448 s--~~~l~s~s-dg~I~vwd~~~~------~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~ 518 (723)
+ |+++|+|+ |+...||++.+. ...+.+.+|.+.+.|+.|-+|++|++|+.|.+..+||+++|+.+..|.||
T Consensus 106 sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH 185 (343)
T KOG0286|consen 106 SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGH 185 (343)
T ss_pred CCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCC
Confidence 9 99999999 999999999854 34567889999999999998779999999999999999999999999999
Q ss_pred CCcEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEE
Q 004924 519 QNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVY 596 (723)
Q Consensus 519 ~~~i~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vw 596 (723)
.+.|.++.++| +++.+++|+.|+..++||++.+ .+.+ .+.+|. ..|+++.|.|+|.-+++| .|++.++|
T Consensus 186 ~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-----~c~q-tF~ghe---sDINsv~ffP~G~afatGSDD~tcRly 256 (343)
T KOG0286|consen 186 TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-----QCVQ-TFEGHE---SDINSVRFFPSGDAFATGSDDATCRLY 256 (343)
T ss_pred cccEEEEecCCCCCCeEEecccccceeeeeccCc-----ceeE-eecccc---cccceEEEccCCCeeeecCCCceeEEE
Confidence 99999999999 9999999999999999999996 4455 456776 899999999999999995 88999999
Q ss_pred ECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecC
Q 004924 597 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 676 (723)
Q Consensus 597 d~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~ 676 (723)
|++..+.+..+....-..+|++++||..|++|++|..|..+.+||.-.++.+..+.+ |++.|. ++..+|
T Consensus 257 DlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~G--------HeNRvS--cl~~s~- 325 (343)
T KOG0286|consen 257 DLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAG--------HENRVS--CLGVSP- 325 (343)
T ss_pred eecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeec--------cCCeeE--EEEECC-
Confidence 999999999987655578899999999999999999999999999999999988873 355555 999999
Q ss_pred CCCEEEEEECCCcEEEEe
Q 004924 677 EPNRIALGLTNGRVHVIE 694 (723)
Q Consensus 677 d~~~las~s~Dg~v~iWd 694 (723)
||..+++||+|.++|||.
T Consensus 326 DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 326 DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCcEEEecchhHheeecC
Confidence 999999999999999994
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-37 Score=287.43 Aligned_cols=294 Identities=17% Similarity=0.205 Sum_probs=248.6
Q ss_pred ecCCCCCCCceEEEEEeCC-CCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEE
Q 004924 367 LLPDNSFGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF 445 (723)
Q Consensus 367 ~l~~~~h~~~V~~l~fspd-g~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 445 (723)
.+++ |.+.|..++..+. ...+++++.|.++.+|++..... +.|...+.+. ||+..|..+
T Consensus 10 tl~g--h~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~----------------~~G~~~r~~~--GHsH~v~dv 69 (315)
T KOG0279|consen 10 TLEG--HTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI----------------KYGVPVRRLT--GHSHFVSDV 69 (315)
T ss_pred eecC--CCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc----------------ccCceeeeee--ccceEecce
Confidence 3665 9999999999987 46788999999999999875433 3344444333 899999999
Q ss_pred EEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCc--C
Q 004924 446 ALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH--Q 519 (723)
Q Consensus 446 ~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~--~ 519 (723)
..+ |++.++++ |+++++||+.+|+..+.|.+|...|.+++|++|+ .+++|+.|.+|++|++.. .+..++..+ .
T Consensus 70 ~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~ 148 (315)
T KOG0279|consen 70 VLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHR 148 (315)
T ss_pred EEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCc
Confidence 999 89999999 9999999999999999999999999999999999 999999999999999774 555555433 7
Q ss_pred CcEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEE
Q 004924 520 NRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVY 596 (723)
Q Consensus 520 ~~i~~l~~spd--g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vw 596 (723)
..|+|+.|+|+ ..++++++.|+++++||+++. .+.+...+|. +.++.+++||||...++ +.||.+.+|
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~------~l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~Lw 219 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC------QLRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLW 219 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc------chhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEE
Confidence 89999999997 678999999999999999983 3444556777 89999999999999998 599999999
Q ss_pred ECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecC
Q 004924 597 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 676 (723)
Q Consensus 597 d~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~ 676 (723)
|++.++.+..+ +|...|.+++|+|+.-+|+.+.. ..|+|||++++..+..+......+ +.......+++++|++
T Consensus 220 dL~~~k~lysl---~a~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~- 293 (315)
T KOG0279|consen 220 DLNEGKNLYSL---EAFDIVNSLCFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA- 293 (315)
T ss_pred EccCCceeEec---cCCCeEeeEEecCCceeEeeccC-CceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-
Confidence 99999998777 45899999999999888777754 459999999999888876543222 2234456788999999
Q ss_pred CCCEEEEEECCCcEEEEecC
Q 004924 677 EPNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 677 d~~~las~s~Dg~v~iWd~~ 696 (723)
+|..|.+|-.|+.|++|.+.
T Consensus 294 dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 294 DGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CCcEEEeeecCCcEEEEEee
Confidence 99999999999999999875
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-35 Score=278.64 Aligned_cols=289 Identities=16% Similarity=0.230 Sum_probs=234.0
Q ss_pred eeccCCCC-CCceeeeCCCcccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCC
Q 004924 309 DASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD 387 (723)
Q Consensus 309 ~~~~~h~~-v~s~~~~~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~ 387 (723)
-+|.||.+ |........ +...+++++.|.++.+|++...+..--....++.| |...|..+..++||+
T Consensus 9 ~tl~gh~d~Vt~la~~~~----------~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G--HsH~v~dv~~s~dg~ 76 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIK----------NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG--HSHFVSDVVLSSDGN 76 (315)
T ss_pred eeecCCCceEEEEEeecC----------CCceEEEcccceEEEEEEeccCccccCceeeeeec--cceEecceEEccCCc
Confidence 34567777 554333222 34568999999999999998642111112223555 999999999999999
Q ss_pred EEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEE
Q 004924 388 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFS 464 (723)
Q Consensus 388 ~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd 464 (723)
+.++++.|+++++||+.+++. ... +. +|...|.+++|+ +..+++|+ |.+|++|+
T Consensus 77 ~alS~swD~~lrlWDl~~g~~-----t~~----------------f~--GH~~dVlsva~s~dn~qivSGSrDkTiklwn 133 (315)
T KOG0279|consen 77 FALSASWDGTLRLWDLATGES-----TRR----------------FV--GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWN 133 (315)
T ss_pred eEEeccccceEEEEEecCCcE-----EEE----------------EE--ecCCceEEEEecCCCceeecCCCcceeeeee
Confidence 999999999999999874321 111 11 799999999999 78999999 99999999
Q ss_pred cCCCcEEEEEeCC--CCCeEEEEEcCC--C-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeC
Q 004924 465 LETFQTLATFANP--PPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA 539 (723)
Q Consensus 465 ~~~~~~~~~~~~~--~~~v~~l~~~p~--~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~ 539 (723)
+.. .+..++..+ .+.|+|+.|+|+ . .|++++.|++|++||+++-+....+.||++.++.++++|||...++|+.
T Consensus 134 t~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk 212 (315)
T KOG0279|consen 134 TLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK 212 (315)
T ss_pred ecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC
Confidence 874 455555433 789999999999 4 9999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCCCC-------
Q 004924 540 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKM------- 612 (723)
Q Consensus 540 dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h------- 612 (723)
||.+.+||++.++ .+.++. +. ..|.+++|+|+..+|+.+.+..|+|||+.++.++..+....-
T Consensus 213 dg~~~LwdL~~~k-----~lysl~--a~---~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~ 282 (315)
T KOG0279|consen 213 DGEAMLWDLNEGK-----NLYSLE--AF---DIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAG 282 (315)
T ss_pred CceEEEEEccCCc-----eeEecc--CC---CeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccC
Confidence 9999999999863 344332 33 789999999998888888888899999999998877765321
Q ss_pred CCCeEEEEEeeCCcEEEEEeCCCcEEEEECC
Q 004924 613 DLPITYATYSCDGKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 613 ~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~ 643 (723)
.....+++||+||..|++|..|+.|++|.+.
T Consensus 283 ~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 283 DPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 2235678999999999999999999999875
No 12
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=303.78 Aligned_cols=325 Identities=21% Similarity=0.321 Sum_probs=263.5
Q ss_pred cCCCCCEEEEEeCC-CeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCccccc
Q 004924 333 SLPDADSAVCAKSL-EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 411 (723)
Q Consensus 333 ~spdg~~la~~s~d-g~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g 411 (723)
+...|.+||.|+.. |.+-||+... .. +.+..++|...+.++++||||+++|+|+.||.|+|||..++.
T Consensus 315 ~N~tGDWiA~g~~klgQLlVweWqs----Es---YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf---- 383 (893)
T KOG0291|consen 315 FNSTGDWIAFGCSKLGQLLVWEWQS----ES---YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF---- 383 (893)
T ss_pred ecccCCEEEEcCCccceEEEEEeec----cc---eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce----
Confidence 55669999999876 8899999874 11 113334699999999999999999999999999999877433
Q ss_pred ccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCC-CeEEEEEc
Q 004924 412 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPP-IATYFILL 487 (723)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~-~v~~l~~~ 487 (723)
|..++. .|++.|+.+.|+ |+.+++.+ ||+|+.||+...+..+++..+.. ...|++..
T Consensus 384 -----------------C~vTFt--eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD 444 (893)
T KOG0291|consen 384 -----------------CFVTFT--EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVD 444 (893)
T ss_pred -----------------EEEEec--cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEc
Confidence 333332 699999999999 89999999 99999999999999999986543 56899999
Q ss_pred CCC-eEEEEECCC-cEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecC
Q 004924 488 PQD-LFAFGFDDS-SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 565 (723)
Q Consensus 488 p~~-~l~sgs~dg-~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~ 565 (723)
|.| .+++|+.|. .|++|++.+|+.+..+.||.++|.+++|+|+|..|+++|.|.+|++||+-... ....++...
T Consensus 445 ~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~----~~vEtl~i~ 520 (893)
T KOG0291|consen 445 PSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS----GTVETLEIR 520 (893)
T ss_pred CCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC----ceeeeEeec
Confidence 999 888888887 79999999999999999999999999999999999999999999999996521 122323322
Q ss_pred CCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCC------------------CCCCCeEEEEEeeCCc
Q 004924 566 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD------------------KMDLPITYATYSCDGK 626 (723)
Q Consensus 566 ~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~------------------~h~~~v~~l~~spdg~ 626 (723)
..+..++|+|+|+.+++ .-||.|.+||...+..+..+.+. .....++.+++|+||.
T Consensus 521 -----sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~ 595 (893)
T KOG0291|consen 521 -----SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGK 595 (893)
T ss_pred -----cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCC
Confidence 57999999999999998 59999999999876655433221 1256899999999999
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeeccccc-------------------------------------CCC---------
Q 004924 627 CIYVSCKSGHVKVFDTSTLELRCQINLTAYA-------------------------------------QPG--------- 660 (723)
Q Consensus 627 ~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~-------------------------------------~~g--------- 660 (723)
++++|+..+.|++|++.++-+++.+....+. .+|
T Consensus 596 ~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssR 675 (893)
T KOG0291|consen 596 CILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSR 675 (893)
T ss_pred EEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCcccc
Confidence 9999999999999999999887776632221 001
Q ss_pred CccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCC
Q 004924 661 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 661 ~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
+....|.++.+.|+| .|+-+|.++..| |.||.+.+.
T Consensus 676 r~rpeIrv~sv~fsP-tgraFAaatTEG-l~IYsld~~ 711 (893)
T KOG0291|consen 676 RFRPEIRVTSVQFSP-TGRAFAAATTEG-LLIYSLDTT 711 (893)
T ss_pred ccCceEEEEEEEECC-CcCeeeeecccc-eEEEecCCc
Confidence 011246688999999 799999999887 678887553
No 13
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.9e-34 Score=288.86 Aligned_cols=356 Identities=15% Similarity=0.144 Sum_probs=267.2
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECC----CcEEEEeccCC
Q 004924 331 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT----ATHKLWKWQSN 406 (723)
Q Consensus 331 ~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~d----g~i~iWd~~~~ 406 (723)
..+||.|-++|+|...|+||||+..+ ...+...+++- -.++|..++|++|++++++.+.. |.+.+||..+.
T Consensus 65 AkySPsG~yiASGD~sG~vRIWdtt~---~~hiLKnef~v--~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~S 139 (603)
T KOG0318|consen 65 AKYSPSGFYIASGDVSGKVRIWDTTQ---KEHILKNEFQV--LAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNS 139 (603)
T ss_pred EEeCCCceEEeecCCcCcEEEEeccC---cceeeeeeeee--cccccccceeCCCCcEEEEEecCccceeEEEEecCCCc
Confidence 45899999999999999999999875 34444444544 67899999999999999988873 45667774432
Q ss_pred cc-cccccceeee--------eEEEecCCCeee---------eeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEc
Q 004924 407 KQ-SLEEENVNME--------SQLYQPSSKLVM---------TNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSL 465 (723)
Q Consensus 407 ~~-~~g~~~~~~~--------~~~~~~~~~~~~---------~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~ 465 (723)
.- .+|+...--+ .|+-.......+ .......|..-|.|+.|+ |..+++++ ||+|.+||-
T Consensus 140 vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDG 219 (603)
T KOG0318|consen 140 VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDG 219 (603)
T ss_pred cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcC
Confidence 11 2232211110 011111111111 111223688999999999 99999999 999999999
Q ss_pred CCCcEEEEEe---CCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEE----------------------------
Q 004924 466 ETFQTLATFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA---------------------------- 513 (723)
Q Consensus 466 ~~~~~~~~~~---~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~---------------------------- 513 (723)
.+|+.+..+. +|.+.|.+++|+||+ ++++++.|.+++|||+.++++++
T Consensus 220 ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~ 299 (603)
T KOG0318|consen 220 KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLS 299 (603)
T ss_pred CCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcC
Confidence 9999999998 899999999999999 99999999999999998764432
Q ss_pred ---------------EEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeec------eee-------------
Q 004924 514 ---------------KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS------KFL------------- 559 (723)
Q Consensus 514 ---------------~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~------~~l------------- 559 (723)
.+.||...|+++..+|++++|++|+.||.|.-||..+|..-.. ..+
T Consensus 300 G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t 379 (603)
T KOG0318|consen 300 GTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFT 379 (603)
T ss_pred cEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEE
Confidence 3457999999999999999999999999999999877532110 000
Q ss_pred -------eee-------------ecCCCC---------------------------------CCCCeEEEEEccCCCEEE
Q 004924 560 -------HSF-------------QTGLVP---------------------------------ETTIVNHIQFHPDQIHLL 586 (723)
Q Consensus 560 -------~~~-------------~~~~~~---------------------------------~~~~v~~l~~spdg~~l~ 586 (723)
..+ ..++.| ......+++++|++..++
T Consensus 380 ~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~va 459 (603)
T KOG0318|consen 380 IGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVA 459 (603)
T ss_pred EecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEE
Confidence 000 000000 013456788999999999
Q ss_pred E-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCc
Q 004924 587 S-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLE 665 (723)
Q Consensus 587 ~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~ 665 (723)
+ +.|+.|+||.+..+..........|.++|++++||||+.|||+|...+.+.+||+.+.+.....- +-|...
T Consensus 460 VGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w-------~FHtak 532 (603)
T KOG0318|consen 460 VGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW-------AFHTAK 532 (603)
T ss_pred EecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee-------eeeeee
Confidence 9 59999999999876654443444689999999999999999999999999999999987632211 213444
Q ss_pred cceEEEEEecCCCCEEEEEECCCcEEEEecCCCcee
Q 004924 666 LYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 701 (723)
Q Consensus 666 v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~ 701 (723)
|. +++|+| +..++||||-|-.|.||+++.+...
T Consensus 533 I~--~~aWsP-~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 533 IN--CVAWSP-NNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred EE--EEEeCC-CceEEEeccccceEEEEEccChhhh
Confidence 55 999999 8899999999999999999987654
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.2e-34 Score=298.93 Aligned_cols=343 Identities=14% Similarity=0.157 Sum_probs=277.0
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcc--
Q 004924 331 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ-- 408 (723)
Q Consensus 331 ~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~-- 408 (723)
.+|+.|.+++++|+.|-++++|.++.. ..+....+.+ |.+.|..+-|..+..-+++.+.||.+.+|.......
T Consensus 151 i~Ws~DSr~l~~gsrD~s~rl~~v~~~---k~~~~~~l~g--Hkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~ 225 (893)
T KOG0291|consen 151 IDWSDDSRLLVTGSRDLSARLFGVDGN---KNLFTYALNG--HKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPEL 225 (893)
T ss_pred EEeccCCceEEeccccceEEEEEeccc---cccceEeccC--CCcceEEEEeccCcceEEEEecCceEEEEEecCCCccc
Confidence 347888999999999999999999863 3345555665 999999999999999999999999999999872111
Q ss_pred ----------------ccccc-----c-------------eeee-------------------eEEEecCCCeeeeeccC
Q 004924 409 ----------------SLEEE-----N-------------VNME-------------------SQLYQPSSKLVMTNDIA 435 (723)
Q Consensus 409 ----------------~~g~~-----~-------------~~~~-------------------~~~~~~~~~~~~~~~~~ 435 (723)
.++.. . ..+. ..+|+...-.+++.+.
T Consensus 226 ~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LS- 304 (893)
T KOG0291|consen 226 DKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLS- 304 (893)
T ss_pred ccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEee-
Confidence 00111 0 0000 0233333333333332
Q ss_pred CCCCCCeEEEEEe--CCEEEEEe--CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCc
Q 004924 436 ADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK 510 (723)
Q Consensus 436 ~~h~~~V~~v~~s--~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~ 510 (723)
-...+|..++|+ |+++|.|+ =|.+-||+..+...+...++|...+++++++||| .+|+|+.||.|+|||..+|-
T Consensus 305 -is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf 383 (893)
T KOG0291|consen 305 -ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF 383 (893)
T ss_pred -cccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce
Confidence 134678899999 99999999 3799999999998898999999999999999999 99999999999999999999
Q ss_pred EEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-c
Q 004924 511 TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H 589 (723)
Q Consensus 511 ~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~ 589 (723)
|..+|..|++.|+.+.|+..|+.+++++-||+|+.||+... ...+++..... ....|++..|.|..+++| .
T Consensus 384 C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-----rNfRTft~P~p---~QfscvavD~sGelV~AG~~ 455 (893)
T KOG0291|consen 384 CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-----RNFRTFTSPEP---IQFSCVAVDPSGELVCAGAQ 455 (893)
T ss_pred EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc-----ceeeeecCCCc---eeeeEEEEcCCCCEEEeecc
Confidence 99999999999999999999999999999999999999874 33443333222 567889999999998885 4
Q ss_pred CC-cEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCC-cEEEEeecccccCCCCccCccc
Q 004924 590 EG-QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL-ELRCQINLTAYAQPGTISLELY 667 (723)
Q Consensus 590 dg-~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~-~~~~~~~~~~~~~~g~~~~~v~ 667 (723)
|. .|.+|++.+|+.+..+. +|.++|.+++|+|++..|++||.|.+|++||+-.. ..+.++.. .+.
T Consensus 456 d~F~IfvWS~qTGqllDiLs--GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i---------~sd-- 522 (893)
T KOG0291|consen 456 DSFEIFVWSVQTGQLLDILS--GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI---------RSD-- 522 (893)
T ss_pred ceEEEEEEEeecCeeeehhc--CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee---------ccc--
Confidence 44 79999999999988886 57999999999999999999999999999998654 23344432 222
Q ss_pred eEEEEEecCCCCEEEEEECCCcEEEEecCCCceee
Q 004924 668 PLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW 702 (723)
Q Consensus 668 ~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~w 702 (723)
+++++|+| +|+-||+++.||.|.+||+..+....
T Consensus 523 vl~vsfrP-dG~elaVaTldgqItf~d~~~~~q~~ 556 (893)
T KOG0291|consen 523 VLAVSFRP-DGKELAVATLDGQITFFDIKEAVQVG 556 (893)
T ss_pred eeEEEEcC-CCCeEEEEEecceEEEEEhhhceeec
Confidence 55999999 99999999999999999998876553
No 15
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.2e-33 Score=282.13 Aligned_cols=342 Identities=13% Similarity=0.090 Sum_probs=263.1
Q ss_pred cccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecC-CCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCc
Q 004924 329 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLP-DNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 407 (723)
Q Consensus 329 ~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~-~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~ 407 (723)
....++|||.++|+++.||++.+||-.+ ++.... +. ..+|.+.|.+++||||++.++|+|.|.+++|||+.+..
T Consensus 194 ~~VRysPDG~~Fat~gsDgki~iyDGkt----ge~vg~-l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s 268 (603)
T KOG0318|consen 194 NCVRYSPDGSRFATAGSDGKIYIYDGKT----GEKVGE-LEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS 268 (603)
T ss_pred eeEEECCCCCeEEEecCCccEEEEcCCC----ccEEEE-ecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccc
Confidence 3456899999999999999999999774 333322 33 24599999999999999999999999999999998776
Q ss_pred c----cccccc--------------e----eeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEE
Q 004924 408 Q----SLEEEN--------------V----NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISI 462 (723)
Q Consensus 408 ~----~~g~~~--------------~----~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~v 462 (723)
+ +-+... . ...+..+++..+....... +|...|++++.+ +.+|++|+ ||.|.-
T Consensus 269 lv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~--GHnK~ITaLtv~~d~~~i~SgsyDG~I~~ 346 (603)
T KOG0318|consen 269 LVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVIS--GHNKSITALTVSPDGKTIYSGSYDGHINS 346 (603)
T ss_pred eEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheec--ccccceeEEEEcCCCCEEEeeccCceEEE
Confidence 5 111110 0 0123455555555444444 899999999999 89999999 999999
Q ss_pred EEcCCCcEEEEE-eCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCc------------E------------------
Q 004924 463 FSLETFQTLATF-ANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKK------------T------------------ 511 (723)
Q Consensus 463 wd~~~~~~~~~~-~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~------------~------------------ 511 (723)
|+..+|..-+.. ++|...|.+++-+..+.+++.+.|.++++.++..+. +
T Consensus 347 W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~ 426 (603)
T KOG0318|consen 347 WDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACIS 426 (603)
T ss_pred EecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecC
Confidence 999998876655 589999999998876778888889999999764220 0
Q ss_pred -EEEEcCc--------CCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCC
Q 004924 512 -KAKLKGH--------QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 582 (723)
Q Consensus 512 -~~~l~~~--------~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg 582 (723)
+..++.+ .-...+++++|++..+++|+.|+.+++|.+..++.... . ....|. ++|+++++|||+
T Consensus 427 ~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee--~--~~~~h~---a~iT~vaySpd~ 499 (603)
T KOG0318|consen 427 DIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE--A--KLLEHR---AAITDVAYSPDG 499 (603)
T ss_pred cEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccce--e--eeeccc---CCceEEEECCCC
Confidence 0111211 12356889999999999999999999999988653221 1 122344 899999999999
Q ss_pred CEEEEE-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCC
Q 004924 583 IHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGT 661 (723)
Q Consensus 583 ~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~ 661 (723)
.+|+++ ..+.+.+||+.+.+...... .-|...|.+++|+|+..++|+|+-|-.|.||+++.......+. +.
T Consensus 500 ~yla~~Da~rkvv~yd~~s~~~~~~~w-~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik-------nA 571 (603)
T KOG0318|consen 500 AYLAAGDASRKVVLYDVASREVKTNRW-AFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK-------NA 571 (603)
T ss_pred cEEEEeccCCcEEEEEcccCceeccee-eeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec-------cc
Confidence 999997 78999999999887633222 2479999999999999999999999999999998765443333 22
Q ss_pred ccCccceEEEEEecCCCCEEEEEECCCcEEEEecC
Q 004924 662 ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 662 ~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~ 696 (723)
|...++ .+.|-. ...+++.|.|..|++|++.
T Consensus 572 H~~gVn--~v~wld--e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 572 HLGGVN--SVAWLD--ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred cccCce--eEEEec--CceEEeccCcceeEEeccc
Confidence 344455 999975 6789999999999999874
No 16
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-35 Score=285.06 Aligned_cols=270 Identities=20% Similarity=0.284 Sum_probs=237.8
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccc
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 412 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~ 412 (723)
+.|+-..+++++.|++|++||..+ +++... |.| |++.|..++|+..|+++|+++.|-.+.+||.++..
T Consensus 116 ~hp~~~~v~~as~d~tikv~D~~t----g~~e~~-LrG--Ht~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~----- 183 (406)
T KOG0295|consen 116 FHPSEALVVSASEDATIKVFDTET----GELERS-LRG--HTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF----- 183 (406)
T ss_pred eccCceEEEEecCCceEEEEEccc----hhhhhh-hhc--cccceeEEEEecCccEEEecCCccchhheeHHHHH-----
Confidence 345566789999999999999994 666433 555 99999999999999999999999999999976411
Q ss_pred cceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCC
Q 004924 413 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ 489 (723)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~ 489 (723)
.+++... +|+..|.+++|- |+++++++ |.+|+.|++.+|.++.++.+|...|..+..+.|
T Consensus 184 ---------------~c~ks~~--gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~D 246 (406)
T KOG0295|consen 184 ---------------RCIKSLI--GHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQD 246 (406)
T ss_pred ---------------HHHHHhc--CcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCC
Confidence 1111112 799999999998 99999999 999999999999999999999999999999999
Q ss_pred C-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCC---------------CCEEEEEeCCCcEEEEeCCCCce
Q 004924 490 D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS---------------LNVLVSSGADAQLCVWDAVGWKK 553 (723)
Q Consensus 490 ~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spd---------------g~~l~s~s~dg~I~vwd~~~~~~ 553 (723)
| .+++++.|.++++|-+.++++...++.|+.+|.|++|.|. +.++.+++.|++|++||+.+|
T Consensus 247 Gti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-- 324 (406)
T KOG0295|consen 247 GTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-- 324 (406)
T ss_pred eeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC--
Confidence 9 9999999999999999999999999999999999999663 248999999999999999996
Q ss_pred eeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEe
Q 004924 554 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 632 (723)
Q Consensus 554 ~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs 632 (723)
.++.+ ..+|. ..|..++|+|.|+||+++ .|+++++||++++++..++. .|...++++.|+.+..++++|+
T Consensus 325 ---~cL~t-L~ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~--ah~hfvt~lDfh~~~p~VvTGs 395 (406)
T KOG0295|consen 325 ---MCLFT-LVGHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE--AHEHFVTSLDFHKTAPYVVTGS 395 (406)
T ss_pred ---eEEEE-Eeccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC--CCcceeEEEecCCCCceEEecc
Confidence 45663 45676 799999999999999995 88999999999999999887 4689999999999999999999
Q ss_pred CCCcEEEEEC
Q 004924 633 KSGHVKVFDT 642 (723)
Q Consensus 633 ~dg~I~iwd~ 642 (723)
-|.++++|..
T Consensus 396 Vdqt~KvwEc 405 (406)
T KOG0295|consen 396 VDQTVKVWEC 405 (406)
T ss_pred ccceeeeeec
Confidence 9999999974
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.1e-34 Score=264.97 Aligned_cols=269 Identities=14% Similarity=0.174 Sum_probs=224.7
Q ss_pred CEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEeCCcEEEEE
Q 004924 387 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFS 464 (723)
Q Consensus 387 ~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~sdg~I~vwd 464 (723)
-+|+|+|.|.+||+|...+ |.+..++. ...+.|+.+... ++.||+++...|++||
T Consensus 11 viLvsA~YDhTIRfWqa~t---------------------G~C~rTiq--h~dsqVNrLeiTpdk~~LAaa~~qhvRlyD 67 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALT---------------------GICSRTIQ--HPDSQVNRLEITPDKKDLAAAGNQHVRLYD 67 (311)
T ss_pred eEEEeccCcceeeeeehhc---------------------CeEEEEEe--cCccceeeEEEcCCcchhhhccCCeeEEEE
Confidence 4799999999999887654 44444433 457789999998 7789999999999999
Q ss_pred cCCCc--EEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCC
Q 004924 465 LETFQ--TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA 541 (723)
Q Consensus 465 ~~~~~--~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg 541 (723)
+.++. ++.++.+|...|+++.|..+| .+++|+.||+++|||++.-.+.+.++ |..+|+++..+|+...|++|..+|
T Consensus 68 ~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg 146 (311)
T KOG0315|consen 68 LNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSG 146 (311)
T ss_pred ccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCC
Confidence 98865 588999999999999999999 99999999999999999977666666 779999999999999999999999
Q ss_pred cEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCce------eEEecCCCCCC
Q 004924 542 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH------TSQLVPDKMDL 614 (723)
Q Consensus 542 ~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~------~~~~~~~~h~~ 614 (723)
.|++||+......+ .+ +++.. ..|.++...|||+++++. ..|..++|++-+... +..++ .|.+
T Consensus 147 ~irvWDl~~~~c~~--~l--iPe~~----~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~--ah~~ 216 (311)
T KOG0315|consen 147 NIRVWDLGENSCTH--EL--IPEDD----TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ--AHNG 216 (311)
T ss_pred cEEEEEccCCcccc--cc--CCCCC----cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee--cccc
Confidence 99999998742211 11 23322 589999999999999985 789999999876443 33333 5789
Q ss_pred CeEEEEEeeCCcEEEEEeCCCcEEEEECCCC-cEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEE
Q 004924 615 PITYATYSCDGKCIYVSCKSGHVKVFDTSTL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 693 (723)
Q Consensus 615 ~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~-~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW 693 (723)
.+..+.+|||+++|+++|.|.+++||+.++. +....+. | |...++ +++||. |+.||++|+.|+.+++|
T Consensus 217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~-------g-h~rWvW--dc~FS~-dg~YlvTassd~~~rlW 285 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT-------G-HQRWVW--DCAFSA-DGEYLVTASSDHTARLW 285 (311)
T ss_pred eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee-------c-CCceEE--eeeecc-CccEEEecCCCCceeec
Confidence 9999999999999999999999999999987 4444554 2 245666 999999 99999999999999999
Q ss_pred ecCCCce
Q 004924 694 EPLESEV 700 (723)
Q Consensus 694 d~~~~~~ 700 (723)
++..++.
T Consensus 286 ~~~~~k~ 292 (311)
T KOG0315|consen 286 DLSAGKE 292 (311)
T ss_pred ccccCce
Confidence 9999984
No 18
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.4e-35 Score=305.49 Aligned_cols=362 Identities=13% Similarity=0.152 Sum_probs=286.8
Q ss_pred CCCCCCcceeeccCCCC-CCceeeeCCCcccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceE
Q 004924 300 KPNQEGRPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVV 378 (723)
Q Consensus 300 ~~~~~~~~~~~~~~h~~-v~s~~~~~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~ 378 (723)
..+..+...+.++||.+ |.+++|.++... ..|+++..|+++++||+... ..|... +.. |.+.|+
T Consensus 132 Wdi~~~~~th~fkG~gGvVssl~F~~~~~~---------~lL~sg~~D~~v~vwnl~~~---~tcl~~-~~~--H~S~vt 196 (775)
T KOG0319|consen 132 WDIKNGYCTHSFKGHGGVVSSLLFHPHWNR---------WLLASGATDGTVRVWNLNDK---RTCLHT-MIL--HKSAVT 196 (775)
T ss_pred EEeeCCEEEEEecCCCceEEEEEeCCccch---------hheeecCCCceEEEEEcccC---chHHHH-HHh--hhhhee
Confidence 34456788899999999 666677666322 45899999999999999852 334433 443 999999
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEeccCCcc----------------cc---cc--cce----eeeeEEEecCCCe-----
Q 004924 379 RLIYSHSGDFLVALTQTATHKLWKWQSNKQ----------------SL---EE--ENV----NMESQLYQPSSKL----- 428 (723)
Q Consensus 379 ~l~fspdg~~las~s~dg~i~iWd~~~~~~----------------~~---g~--~~~----~~~~~~~~~~~~~----- 428 (723)
+++|++|+.-++++|.|..+.|||+...+. .+ ++ ... +...+.|+.+++.
T Consensus 197 sL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~ 276 (775)
T KOG0319|consen 197 SLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQ 276 (775)
T ss_pred eeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhh
Confidence 999999999999999999999999854333 00 00 000 0011223222221
Q ss_pred --------------------------------------eee--------------------------------e------
Q 004924 429 --------------------------------------VMT--------------------------------N------ 432 (723)
Q Consensus 429 --------------------------------------~~~--------------------------------~------ 432 (723)
+.+ .
T Consensus 277 ~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~ 356 (775)
T KOG0319|consen 277 RQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTS 356 (775)
T ss_pred ccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCC
Confidence 000 0
Q ss_pred --ccCCCCCCCeEEEE-Ee-CCEEEEEe-CCcEEEEEcCCCc----EEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcE
Q 004924 433 --DIAADPKDSISCFA-LR-GSHLFSAS-GGKISIFSLETFQ----TLATFANPPPIATYFILLPQD--LFAFGFDDSSI 501 (723)
Q Consensus 433 --~~~~~h~~~V~~v~-~s-~~~l~s~s-dg~I~vwd~~~~~----~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I 501 (723)
....+|+..|.++. |+ |.+|++|+ |.++++|.++.+. ++....+|...|.+++++..+ .|+++|.|+++
T Consensus 357 ~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tl 436 (775)
T KOG0319|consen 357 YCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTL 436 (775)
T ss_pred ceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceE
Confidence 01237999999998 56 87999999 9999999885433 345567999999999998888 99999999999
Q ss_pred EEEeCCCCcEE---E------EEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCC
Q 004924 502 LVHCPCTKKTK---A------KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI 572 (723)
Q Consensus 502 ~iwd~~~~~~~---~------~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~ 572 (723)
++|++...+.. . ....|...|+|++++|+.+.+++||.|++.++|++..+ .+.....+|. ..
T Consensus 437 K~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~------~l~~vLsGH~---RG 507 (775)
T KOG0319|consen 437 KLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL------RLLGVLSGHT---RG 507 (775)
T ss_pred EEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc------eEEEEeeCCc---cc
Confidence 99998762211 1 22459999999999999999999999999999999963 2333667888 79
Q ss_pred eEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEe
Q 004924 573 VNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 651 (723)
Q Consensus 573 v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~ 651 (723)
|.++.|+|..+.+++ +.|++|+||.+.+..+++++. +|...|..+.|-.+|..|++++.||-|++|+++++.++.++
T Consensus 508 vw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~e--GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl 585 (775)
T KOG0319|consen 508 VWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFE--GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL 585 (775)
T ss_pred eEEEEeccccceeEeccCCceEEEEEeccceeeeeec--CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh
Confidence 999999999999999 599999999999999999997 47999999999999999999999999999999999999999
Q ss_pred ecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCC
Q 004924 652 NLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 652 ~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
..| .+.+| +++-+| ...+++||+.||.|.+|.=.+.
T Consensus 586 D~H--------~DrvW--aL~~~~-~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 586 DAH--------NDRVW--ALSVSP-LLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred hhc--------cceeE--EEeecC-ccceeEecCCCeEEEEeecCcH
Confidence 753 66788 888899 7889999999999999975543
No 19
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.9e-34 Score=273.59 Aligned_cols=279 Identities=14% Similarity=0.194 Sum_probs=239.5
Q ss_pred CCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--C
Q 004924 372 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 449 (723)
Q Consensus 372 ~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~ 449 (723)
+|.+.|+.+.|+|+|.+|||||.|..|.+|++..... +.|-. + +|+++|..+.|. +
T Consensus 45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce-----------N~~~l------k-----gHsgAVM~l~~~~d~ 102 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE-----------NFWVL------K-----GHSGAVMELHGMRDG 102 (338)
T ss_pred CCcceEEEEEECCCCCeEeecCCcceEEEEecccccc-----------ceeee------c-----cccceeEeeeeccCC
Confidence 4999999999999999999999999999999764222 11221 1 799999999999 8
Q ss_pred CEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEE
Q 004924 450 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 526 (723)
Q Consensus 450 ~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~ 526 (723)
+.+++++ |.+|+.||+++|++++.+++|..-|.++.-+.-| .+.+|+.||++++||+++...++++. ....++++.
T Consensus 103 s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~ 181 (338)
T KOG0265|consen 103 SHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVG 181 (338)
T ss_pred CEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEE
Confidence 8999999 9999999999999999999999999999866666 88899999999999999998888875 456899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCC----C
Q 004924 527 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT----L 601 (723)
Q Consensus 527 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~----~ 601 (723)
|..++..+++|+-|+.|++||++.+ ..+. +..||. ..|+.+..+|+|.++.+ +.|.++++||++. .
T Consensus 182 f~d~s~qv~sggIdn~ikvWd~r~~-----d~~~-~lsGh~---DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~ 252 (338)
T KOG0265|consen 182 FKDTSDQVISGGIDNDIKVWDLRKN-----DGLY-TLSGHA---DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQ 252 (338)
T ss_pred ecccccceeeccccCceeeeccccC-----cceE-Eeeccc---CceeeEEeccCCCccccccccceEEEEEecccCCCC
Confidence 9999999999999999999999874 3344 567787 89999999999999999 8999999999874 4
Q ss_pred ceeEEecCCCCC--CCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCC
Q 004924 602 NHTSQLVPDKMD--LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 679 (723)
Q Consensus 602 ~~~~~~~~~~h~--~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~ 679 (723)
+++..+.++.|. .....++|||++.++.+|+.|..+++||..+...+..+. || .+.|+ +++|+| ...
T Consensus 253 R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp-------Gh-~gsvn--~~~Fhp-~e~ 321 (338)
T KOG0265|consen 253 RCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP-------GH-YGSVN--EVDFHP-TEP 321 (338)
T ss_pred ceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcC-------Cc-ceeEE--EeeecC-CCc
Confidence 457777766554 345678899999999999999999999999988887776 33 33455 999999 788
Q ss_pred EEEEEECCCcEEEE
Q 004924 680 RIALGLTNGRVHVI 693 (723)
Q Consensus 680 ~las~s~Dg~v~iW 693 (723)
+|.+++.|.+|++=
T Consensus 322 iils~~sdk~i~lg 335 (338)
T KOG0265|consen 322 IILSCSSDKTIYLG 335 (338)
T ss_pred EEEEeccCceeEee
Confidence 99999999998863
No 20
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.8e-33 Score=259.97 Aligned_cols=279 Identities=14% Similarity=0.191 Sum_probs=229.9
Q ss_pred CEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceee
Q 004924 338 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM 417 (723)
Q Consensus 338 ~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~ 417 (723)
-+||++|.|.+||+|... ++.|... ++. ..+.|+.+...||+++||+++. -.||+||+.+..- .....
T Consensus 11 viLvsA~YDhTIRfWqa~----tG~C~rT-iqh--~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np---~Pv~t- 78 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQAL----TGICSRT-IQH--PDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP---NPVAT- 78 (311)
T ss_pred eEEEeccCcceeeeeehh----cCeEEEE-Eec--CccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC---CceeE-
Confidence 468999999999999998 5788665 332 3689999999999999888775 6899999875322 01111
Q ss_pred eeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEE
Q 004924 418 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA 493 (723)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~ 493 (723)
++ +|.+.|.++.|. |+++++|+ ||+++|||++...+.+.+ .+..+|+++..+|+. .|+
T Consensus 79 ----~e-------------~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLi 140 (311)
T KOG0315|consen 79 ----FE-------------GHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELI 140 (311)
T ss_pred ----Ee-------------ccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEE
Confidence 12 799999999999 99999999 999999999986665555 456899999999999 999
Q ss_pred EEECCCcEEEEeCCCCcEEEEEcC-cCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee-ceeeeeeecCCCCCCC
Q 004924 494 FGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC-SKFLHSFQTGLVPETT 571 (723)
Q Consensus 494 sgs~dg~I~iwd~~~~~~~~~l~~-~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~-~~~l~~~~~~~~~~~~ 571 (723)
+|..+|.|++||+.+..+...+-. ...+|.++...|||++++.+...|+.++|++-+..... ..++.++ ..|. +
T Consensus 141 s~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~-~ah~---~ 216 (311)
T KOG0315|consen 141 SGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKF-QAHN---G 216 (311)
T ss_pred eecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhe-eccc---c
Confidence 999999999999998877666533 45789999999999999999999999999997743222 2333333 3454 6
Q ss_pred CeEEEEEccCCCEEEE-EcCCcEEEEECCCC-ceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEE
Q 004924 572 IVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC 649 (723)
Q Consensus 572 ~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~-~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~ 649 (723)
-+....+|||+++|++ +.|.+++||+.++. +....+ .+|...++.++||.||.||++|+.|+.+++|++..++.+.
T Consensus 217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l--~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVL--TGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVR 294 (311)
T ss_pred eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEe--ecCCceEEeeeeccCccEEEecCCCCceeecccccCceee
Confidence 8999999999999999 59999999999887 333333 3578999999999999999999999999999999999888
Q ss_pred Eee
Q 004924 650 QIN 652 (723)
Q Consensus 650 ~~~ 652 (723)
.+.
T Consensus 295 qy~ 297 (311)
T KOG0315|consen 295 QYQ 297 (311)
T ss_pred ecC
Confidence 886
No 21
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1e-32 Score=268.22 Aligned_cols=330 Identities=14% Similarity=0.181 Sum_probs=263.9
Q ss_pred eeeccCCCC-CCceeeeCCCcccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCC
Q 004924 308 LDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG 386 (723)
Q Consensus 308 ~~~~~~h~~-v~s~~~~~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg 386 (723)
++++..|++ ++++. ..|+.+++++|+.|....+|+..+ +. ....+.+ |.+.|+++.||.||
T Consensus 57 ~~tF~~H~~svFavs-----------l~P~~~l~aTGGgDD~AflW~~~~----ge-~~~eltg--HKDSVt~~~Fshdg 118 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVS-----------LHPNNNLVATGGGDDLAFLWDIST----GE-FAGELTG--HKDSVTCCSFSHDG 118 (399)
T ss_pred eeehhhcCCceEEEE-----------eCCCCceEEecCCCceEEEEEccC----Cc-ceeEecC--CCCceEEEEEccCc
Confidence 445556666 55533 567788999999999999999985 34 3334665 99999999999999
Q ss_pred CEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEE
Q 004924 387 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIF 463 (723)
Q Consensus 387 ~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vw 463 (723)
.+||||+.+|.|+||+..++.. . |... ..-..+.-+.|+ +..|+.|+ ||.+.+|
T Consensus 119 tlLATGdmsG~v~v~~~stg~~-----~-------~~~~-----------~e~~dieWl~WHp~a~illAG~~DGsvWmw 175 (399)
T KOG0296|consen 119 TLLATGDMSGKVLVFKVSTGGE-----Q-------WKLD-----------QEVEDIEWLKWHPRAHILLAGSTDGSVWMW 175 (399)
T ss_pred eEEEecCCCccEEEEEcccCce-----E-------EEee-----------cccCceEEEEecccccEEEeecCCCcEEEE
Confidence 9999999999999999875432 1 1110 234567778888 88899999 9999999
Q ss_pred EcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcC-cCCcEEEEEEcCCCCEEEEEeCCC
Q 004924 464 SLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADA 541 (723)
Q Consensus 464 d~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~-~~~~i~~l~~spdg~~l~s~s~dg 541 (723)
.+.++...+.+.+|+.++++=.|.|+| ++++|..||+|++||+.+++++..+.+ ......++.++..+..++.|+.++
T Consensus 176 ~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~ 255 (399)
T KOG0296|consen 176 QIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEG 255 (399)
T ss_pred ECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCc
Confidence 999988889999999999999999999 999999999999999999999988874 344677889999999999999999
Q ss_pred cEEEEeCCCCceeecee--eeeeecCCCCCCCCeEEEEEcc---CCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCC
Q 004924 542 QLCVWDAVGWKKLCSKF--LHSFQTGLVPETTIVNHIQFHP---DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLP 615 (723)
Q Consensus 542 ~I~vwd~~~~~~~~~~~--l~~~~~~~~~~~~~v~~l~~sp---dg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~ 615 (723)
.+++-+..+|+.+.... ...+...+. ..+.++.+.| .=...|+ +-||+|.|||+...+..+.. .|...
T Consensus 256 ~~~~~~~~sgKVv~~~n~~~~~l~~~~e---~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c---~he~~ 329 (399)
T KOG0296|consen 256 VACGVNNGSGKVVNCNNGTVPELKPSQE---ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC---EHEDG 329 (399)
T ss_pred cEEEEccccceEEEecCCCCccccccch---hhhhhhhhcccccccchhhcccccceEEEEecccchhheec---cCCCc
Confidence 99998888875433221 111222333 3444555544 4455566 48999999999888776655 46888
Q ss_pred eEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEec
Q 004924 616 ITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 695 (723)
Q Consensus 616 v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~ 695 (723)
|+.+.|-+ ..+|++++.||.|+.||.++|++...+.+| ... +.+++.+| +.++++|+|.|++.+||++
T Consensus 330 V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH--------~~~--Il~f~ls~-~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 330 VTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGH--------QMG--ILDFALSP-QKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred eEEEEEcC-cchheeeccCceEEeeeccccceEEEEecC--------chh--eeEEEEcC-CCcEEEEecCCCeEEEEec
Confidence 99999998 789999999999999999999999999743 333 44999999 8999999999999999987
Q ss_pred C
Q 004924 696 L 696 (723)
Q Consensus 696 ~ 696 (723)
.
T Consensus 398 ~ 398 (399)
T KOG0296|consen 398 P 398 (399)
T ss_pred C
Confidence 4
No 22
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2e-32 Score=256.24 Aligned_cols=291 Identities=18% Similarity=0.206 Sum_probs=232.3
Q ss_pred cCCCCCCCceEEEEEeCC-CCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEE
Q 004924 368 LPDNSFGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 446 (723)
Q Consensus 368 l~~~~h~~~V~~l~fspd-g~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 446 (723)
+++ |.+.++.++|+|- |..|||||.|+.|++|+...... |. + +..+.++|+..|.+++
T Consensus 10 ~~g--h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-------------~~-----c-k~vld~~hkrsVRsvA 68 (312)
T KOG0645|consen 10 LSG--HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-------------WT-----C-KTVLDDGHKRSVRSVA 68 (312)
T ss_pred ecC--CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-------------EE-----E-EEeccccchheeeeee
Confidence 554 9999999999998 99999999999999999763111 11 1 1222337999999999
Q ss_pred Ee--CCEEEEEe-CCcEEEEEcCC--CcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCC---cEEEEEcC
Q 004924 447 LR--GSHLFSAS-GGKISIFSLET--FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK---KTKAKLKG 517 (723)
Q Consensus 447 ~s--~~~l~s~s-dg~I~vwd~~~--~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~---~~~~~l~~ 517 (723)
|+ |++|++++ |.++.||.-.. .+++.++.+|...|.|++|+++| +||+++.|+.|.||.+..+ +++..++.
T Consensus 69 wsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~ 148 (312)
T KOG0645|consen 69 WSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE 148 (312)
T ss_pred ecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence 99 99999999 99999998654 47889999999999999999999 9999999999999998754 57788999
Q ss_pred cCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEE
Q 004924 518 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVY 596 (723)
Q Consensus 518 ~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vw 596 (723)
|...|..+.|+|....|++++.|.+|++|+-..+. ...+.+ ...+|. ..|.+++|+|.|..|++ +.|++++||
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd--dW~c~~-tl~g~~---~TVW~~~F~~~G~rl~s~sdD~tv~Iw 222 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD--DWECVQ-TLDGHE---NTVWSLAFDNIGSRLVSCSDDGTVSIW 222 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCCeEEEEeecCCC--CeeEEE-EecCcc---ceEEEEEecCCCceEEEecCCcceEee
Confidence 99999999999999999999999999999877311 123444 344565 68999999999999988 588999999
Q ss_pred ECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecC
Q 004924 597 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 676 (723)
Q Consensus 597 d~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~ 676 (723)
-..+. + ...|...+..+.|. ...|++++.|+.|++|.-..+-....+... ....+.|+..|+ +++|+|.
T Consensus 223 ~~~~~-----~-~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~-~~~~~aHe~dVN--sV~w~p~ 291 (312)
T KOG0645|consen 223 RLYTD-----L-SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLL-AKKEGAHEVDVN--SVQWNPK 291 (312)
T ss_pred eeccC-----c-chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHH-Hhhhcccccccc--eEEEcCC
Confidence 87522 2 22468889999998 557999999999999987753222222211 111132444555 9999995
Q ss_pred CCCEEEEEECCCcEEEEecC
Q 004924 677 EPNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 677 d~~~las~s~Dg~v~iWd~~ 696 (723)
.++.|++||+||.|++|.+.
T Consensus 292 ~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 292 VSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCceeecCCCceEEEEEec
Confidence 57899999999999999875
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.7e-34 Score=283.90 Aligned_cols=280 Identities=17% Similarity=0.231 Sum_probs=238.5
Q ss_pred CCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCE
Q 004924 374 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 451 (723)
Q Consensus 374 ~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~ 451 (723)
...|..+.|.|+|+.|++|+..|.+.+|+-.+ ++. ..++ ..|.++|.++.|+ |.+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~----------------fnF--Etil-----QaHDs~Vr~m~ws~~g~w 152 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS----------------FNF--ETIL-----QAHDSPVRTMKWSHNGTW 152 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCce----------------eeH--HHHh-----hhhcccceeEEEccCCCE
Confidence 56899999999999999999999999998532 111 1112 2699999999999 899
Q ss_pred EEEEe-CCcEEEEEcCCCcEEEEEe-CCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEc
Q 004924 452 LFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 528 (723)
Q Consensus 452 l~s~s-dg~I~vwd~~~~~~~~~~~-~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~s 528 (723)
+++|+ +|.|++|+..-. .++.+. .|...|++++|+|++ .|++++.||+|+|||....+....+.||.-.|.+++|+
T Consensus 153 miSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH 231 (464)
T KOG0284|consen 153 MISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH 231 (464)
T ss_pred EEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC
Confidence 99999 999999997643 344444 445899999999999 99999999999999999888888999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEe
Q 004924 529 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 607 (723)
Q Consensus 529 pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~ 607 (723)
|....+++|+.|..|++||.++|.+++. ..+|. ..|..+.|+|++.+|++ |.|..++++|+++.+.+.++
T Consensus 232 P~kgLiasgskDnlVKlWDprSg~cl~t------lh~HK---ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 232 PTKGLIASGSKDNLVKLWDPRSGSCLAT------LHGHK---NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY 302 (464)
T ss_pred CccceeEEccCCceeEeecCCCcchhhh------hhhcc---ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh
Confidence 9999999999999999999999755432 33555 78999999999999999 69999999999988888888
Q ss_pred cCCCCCCCeEEEEEee-CCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEEC
Q 004924 608 VPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 686 (723)
Q Consensus 608 ~~~~h~~~v~~l~~sp-dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~ 686 (723)
. +|...++++.|+| ...++.+|+.||.|..|.+...+.+..+.. + |+..|+ +++||| -|.+|++|+.
T Consensus 303 r--~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~------A-Hd~~iw--sl~~hP-lGhil~tgsn 370 (464)
T KOG0284|consen 303 R--GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP------A-HDGEIW--SLAYHP-LGHILATGSN 370 (464)
T ss_pred h--cchhhheeeccccccccceeeccCCCceEEEeccccccccCCCc------c-ccccee--eeeccc-cceeEeecCC
Confidence 6 4799999999999 556888999999999999986665555432 2 466777 999999 7999999999
Q ss_pred CCcEEEEecCCC
Q 004924 687 NGRVHVIEPLES 698 (723)
Q Consensus 687 Dg~v~iWd~~~~ 698 (723)
|.++++|.-..+
T Consensus 371 d~t~rfw~r~rp 382 (464)
T KOG0284|consen 371 DRTVRFWTRNRP 382 (464)
T ss_pred CcceeeeccCCC
Confidence 999999986543
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-33 Score=272.67 Aligned_cols=278 Identities=18% Similarity=0.179 Sum_probs=244.4
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 450 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 450 (723)
|...|+.+-|.|+-..+++++.|++|++||..++++ ...+. +|.+.|.+++|+ |.
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~---------------------e~~Lr--GHt~sv~di~~~a~Gk 163 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL---------------------ERSLR--GHTDSVFDISFDASGK 163 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEccchhh---------------------hhhhh--ccccceeEEEEecCcc
Confidence 999999999999999999999999999999775332 22222 799999999999 99
Q ss_pred EEEEEe-CCcEEEEEcCC-CcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEE
Q 004924 451 HLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 527 (723)
Q Consensus 451 ~l~s~s-dg~I~vwd~~~-~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~ 527 (723)
++++++ |=.+++||..+ .++++.+.+|...|.+++|-|.| ++++++.|.+|+.|++.+|-+++++.+|...|..+..
T Consensus 164 ~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v 243 (406)
T KOG0295|consen 164 YLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRV 243 (406)
T ss_pred EEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEe
Confidence 999999 87799999987 67888888999999999999999 9999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccC---------------CCEEEE-EcCC
Q 004924 528 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---------------QIHLLS-IHEG 591 (723)
Q Consensus 528 spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spd---------------g~~l~~-s~dg 591 (723)
+.||..+++++.|.++++|-+.++++ .. ....|. .+|.+++|.|. +.++.+ +.|+
T Consensus 244 ~~DGti~As~s~dqtl~vW~~~t~~~-----k~-~lR~hE---h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk 314 (406)
T KOG0295|consen 244 NQDGTIIASCSNDQTLRVWVVATKQC-----KA-ELREHE---HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK 314 (406)
T ss_pred cCCeeEEEecCCCceEEEEEeccchh-----hh-hhhccc---cceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence 99999999999999999999988532 12 233454 67888888763 246666 5999
Q ss_pred cEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEE
Q 004924 592 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 671 (723)
Q Consensus 592 ~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v 671 (723)
+|++||+.++.++.++. +|...|..++|+|.|+||+++.+|+++++||++++++...+..+ .+- ++++
T Consensus 315 tIk~wdv~tg~cL~tL~--ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah--------~hf--vt~l 382 (406)
T KOG0295|consen 315 TIKIWDVSTGMCLFTLV--GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH--------EHF--VTSL 382 (406)
T ss_pred eEEEEeccCCeEEEEEe--cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC--------cce--eEEE
Confidence 99999999999999987 57999999999999999999999999999999999999998753 333 5599
Q ss_pred EEecCCCCEEEEEECCCcEEEEec
Q 004924 672 AAHPLEPNRIALGLTNGRVHVIEP 695 (723)
Q Consensus 672 ~~sp~d~~~las~s~Dg~v~iWd~ 695 (723)
.|+. +..+++||+-|.++++|..
T Consensus 383 Dfh~-~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 383 DFHK-TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ecCC-CCceEEeccccceeeeeec
Confidence 9998 6789999999999999974
No 25
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.6e-34 Score=290.31 Aligned_cols=282 Identities=16% Similarity=0.221 Sum_probs=238.7
Q ss_pred CCCCceEEEEEeC-CCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--
Q 004924 372 SFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 448 (723)
Q Consensus 372 ~h~~~V~~l~fsp-dg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-- 448 (723)
||+..|.++.|.| .+.+|++++.|+.|+||++. + .+.+++++. +|..+|.+++|+
T Consensus 212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy------------------~--~~~~lrtf~--gH~k~Vrd~~~s~~ 269 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVY------------------D--DRRCLRTFK--GHRKPVRDASFNNC 269 (503)
T ss_pred CCccccchhhhccceeeEEEecCCCceEEEEEEe------------------c--Ccceehhhh--cchhhhhhhhcccc
Confidence 4999999999999 89999999999999999964 2 344555555 899999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEE
Q 004924 449 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 525 (723)
Q Consensus 449 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l 525 (723)
|..+.+++ |+.+++||+++|+++..+.. ...++|+.|+|++ .+++|+.|+.|+.||+++++.++.+..|-+.|..+
T Consensus 270 g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i 348 (503)
T KOG0282|consen 270 GTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDI 348 (503)
T ss_pred CCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeee
Confidence 89999999 99999999999999998864 3457899999999 89999999999999999999999999899999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCc--
Q 004924 526 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN-- 602 (723)
Q Consensus 526 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~-- 602 (723)
.|-++|+.+++.+.|++++||+.+.+..+.. +. -... ....++..+|++.++++ +.|+.|.++.+...-
T Consensus 349 ~F~~~g~rFissSDdks~riWe~~~~v~ik~--i~-~~~~-----hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~ 420 (503)
T KOG0282|consen 349 TFVDEGRRFISSSDDKSVRIWENRIPVPIKN--IA-DPEM-----HTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL 420 (503)
T ss_pred EEccCCceEeeeccCccEEEEEcCCCccchh--hc-chhh-----ccCcceecCCCCCeehhhccCceEEEEeccccccc
Confidence 9999999999999999999999987532221 11 1122 35678999999999999 899999999875322
Q ss_pred -eeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEE
Q 004924 603 -HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 681 (723)
Q Consensus 603 -~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~l 681 (723)
....+.++.-.+.-..+.|||||.+|++|+.||.+++||.++.+++..+..+ ... ++.+.|||.....+
T Consensus 421 nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah--------~~~--ci~v~wHP~e~Skv 490 (503)
T KOG0282|consen 421 NKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH--------DQP--CIGVDWHPVEPSKV 490 (503)
T ss_pred CHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC--------Ccc--eEEEEecCCCccee
Confidence 1223443323567788999999999999999999999999999999888743 333 55999999888899
Q ss_pred EEEECCCcEEEEe
Q 004924 682 ALGLTNGRVHVIE 694 (723)
Q Consensus 682 as~s~Dg~v~iWd 694 (723)
||||.||.|++|+
T Consensus 491 at~~w~G~Ikiwd 503 (503)
T KOG0282|consen 491 ATCGWDGLIKIWD 503 (503)
T ss_pred EecccCceeEecC
Confidence 9999999999996
No 26
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.4e-33 Score=299.73 Aligned_cols=260 Identities=16% Similarity=0.239 Sum_probs=227.3
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcc---ccccc-------ceeeeeEEEecCCCeeeeeccCCCCCCCe
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ---SLEEE-------NVNMESQLYQPSSKLVMTNDIAADPKDSI 442 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~---~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 442 (723)
....++|+.||+|+..||.|-.|..|++|.+..... +.... ...+.....|..++.....+. +|.++|
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~--GH~GPV 454 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY--GHSGPV 454 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee--cCCCce
Confidence 356899999999999999999999999999885332 01110 011112445555554444444 899999
Q ss_pred EEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCc
Q 004924 443 SCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH 518 (723)
Q Consensus 443 ~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~ 518 (723)
..+.|+ .++|++|+ |++|++|.+.+..++..+++|..+|+++.|+|-| +||+|+.|++.++|......+.+.+.+|
T Consensus 455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifagh 534 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGH 534 (707)
T ss_pred eeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccc
Confidence 999999 88999999 9999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEE
Q 004924 519 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 597 (723)
Q Consensus 519 ~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd 597 (723)
-+.|.|+.|+|++.++++||.|.++++||+.+|. .++ ++.||. ++|.+++|||+|++|+++ .||.|.+||
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-----~VR-iF~GH~---~~V~al~~Sp~Gr~LaSg~ed~~I~iWD 605 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-----SVR-IFTGHK---GPVTALAFSPCGRYLASGDEDGLIKIWD 605 (707)
T ss_pred ccccceEEECCcccccccCCCCceEEEEEcCCCc-----EEE-EecCCC---CceEEEEEcCCCceEeecccCCcEEEEE
Confidence 9999999999999999999999999999999974 344 678888 899999999999999994 999999999
Q ss_pred CCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCC
Q 004924 598 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 645 (723)
Q Consensus 598 ~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~ 645 (723)
+.+++.+..+.. |.+.|.++.||.||..||+|+.|++|++||+..-
T Consensus 606 l~~~~~v~~l~~--Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 606 LANGSLVKQLKG--HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cCCCcchhhhhc--ccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999988874 6999999999999999999999999999998754
No 27
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.4e-33 Score=267.80 Aligned_cols=288 Identities=17% Similarity=0.201 Sum_probs=245.4
Q ss_pred CCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--C
Q 004924 372 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 449 (723)
Q Consensus 372 ~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~ 449 (723)
+|.+.|.|+++.|-..++++|+.|++++|||+.++.. ..++. ||...|..+++| .
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L---------------------kltlt--Ghi~~vr~vavS~rH 205 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL---------------------KLTLT--GHIETVRGVAVSKRH 205 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE---------------------EEeec--chhheeeeeeecccC
Confidence 5999999999999999999999999999999874332 22222 799999999999 7
Q ss_pred CEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEE
Q 004924 450 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 527 (723)
Q Consensus 450 ~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~ 527 (723)
.|+++++ |+.|+.||++..+.++.+.+|-..|.|++.+|.- .|++|+.|.++++||+++...+..+.||..+|..+.+
T Consensus 206 pYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~ 285 (460)
T KOG0285|consen 206 PYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMC 285 (460)
T ss_pred ceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEe
Confidence 8999999 9999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEe
Q 004924 528 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQL 607 (723)
Q Consensus 528 spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~ 607 (723)
.|-...+++|+.|++|++||+..|+. .. ....|. ..|.+++.+|....+++++...|+-|++..|..+..+
T Consensus 286 ~~~dpqvit~S~D~tvrlWDl~agkt-----~~-tlt~hk---ksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nl 356 (460)
T KOG0285|consen 286 QPTDPQVITGSHDSTVRLWDLRAGKT-----MI-TLTHHK---KSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNL 356 (460)
T ss_pred ecCCCceEEecCCceEEEeeeccCce-----eE-eeeccc---ceeeEEecCCchhhhhccCCccceeccCCccchhhcc
Confidence 99888999999999999999998742 22 233454 7899999999999999988889999999999988876
Q ss_pred cCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECC
Q 004924 608 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 687 (723)
Q Consensus 608 ~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D 687 (723)
. +|..-|.+++...|| ++++|+++|.+.+||.++|...+.... .++.|.-...--+.+.+|.. .+..|++|..|
T Consensus 357 s--gh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t--~vqpGSl~sEagI~as~fDk-tg~rlit~ead 430 (460)
T KOG0285|consen 357 S--GHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQT--IVQPGSLESEAGIFASCFDK-TGSRLITGEAD 430 (460)
T ss_pred c--cccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccc--cccCCccccccceeEEeecc-cCceEEeccCC
Confidence 4 578889999887665 688999999999999999865554421 12223322222244889988 78999999999
Q ss_pred CcEEEEecCC
Q 004924 688 GRVHVIEPLE 697 (723)
Q Consensus 688 g~v~iWd~~~ 697 (723)
.+|++|.-.+
T Consensus 431 KtIk~~keDe 440 (460)
T KOG0285|consen 431 KTIKMYKEDE 440 (460)
T ss_pred cceEEEeccc
Confidence 9999998654
No 28
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.5e-31 Score=250.44 Aligned_cols=286 Identities=16% Similarity=0.216 Sum_probs=230.0
Q ss_pred eeeccCCCC-CCceeeeCCCcccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCC
Q 004924 308 LDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG 386 (723)
Q Consensus 308 ~~~~~~h~~-v~s~~~~~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg 386 (723)
.+.+.||.+ +.+..+++.. |..||+++.|..|+||+... .+.-.|+.+ +.+ +|+..|.+++|+|.|
T Consensus 7 ~~~~~gh~~r~W~~awhp~~----------g~ilAscg~Dk~vriw~~~~-~~s~~ck~v-ld~-~hkrsVRsvAwsp~g 73 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGK----------GVILASCGTDKAVRIWSTSS-GDSWTCKTV-LDD-GHKRSVRSVAWSPHG 73 (312)
T ss_pred EEeecCCCCcEEEEEeccCC----------ceEEEeecCCceEEEEecCC-CCcEEEEEe-ccc-cchheeeeeeecCCC
Confidence 345567777 6665554431 77899999999999999984 223556655 444 699999999999999
Q ss_pred CEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEE
Q 004924 387 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIF 463 (723)
Q Consensus 387 ~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vw 463 (723)
+|||++|.|.++.||.-..+.. +++.. .+||...|.|++|+ |++||+|+ |..|-||
T Consensus 74 ~~La~aSFD~t~~Iw~k~~~ef-------------------ecv~~--lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiW 132 (312)
T KOG0645|consen 74 RYLASASFDATVVIWKKEDGEF-------------------ECVAT--LEGHENEVKCVAWSASGNYLATCSRDKSVWIW 132 (312)
T ss_pred cEEEEeeccceEEEeecCCCce-------------------eEEee--eeccccceeEEEEcCCCCEEEEeeCCCeEEEE
Confidence 9999999999999997442221 12222 23899999999999 99999999 9999999
Q ss_pred EcCC---CcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCC---CCcEEEEEcCcCCcEEEEEEcCCCCEEEE
Q 004924 464 SLET---FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC---TKKTKAKLKGHQNRITCLAYSLSLNVLVS 536 (723)
Q Consensus 464 d~~~---~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~---~~~~~~~l~~~~~~i~~l~~spdg~~l~s 536 (723)
.+.. .++...++.|...|..+.|+|.. .|++++.|.+|++|.-. .-.+..++.+|.+.|.+++|++.|..|++
T Consensus 133 e~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s 212 (312)
T KOG0645|consen 133 EIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVS 212 (312)
T ss_pred EecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEE
Confidence 9974 46778889999999999999999 99999999999999865 24688999999999999999999999999
Q ss_pred EeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCC------ceeEEecC
Q 004924 537 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL------NHTSQLVP 609 (723)
Q Consensus 537 ~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~------~~~~~~~~ 609 (723)
++.|++++||...+. +...|. ..+..+.|. + ..|++ |.|+.|++|.-... +.+... .
T Consensus 213 ~sdD~tv~Iw~~~~~----------~~~~~s---r~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~ 276 (312)
T KOG0645|consen 213 CSDDGTVSIWRLYTD----------LSGMHS---RALYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-E 276 (312)
T ss_pred ecCCcceEeeeeccC----------cchhcc---cceEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHhh-h
Confidence 999999999986542 333454 688999999 3 46777 69999999987542 111111 2
Q ss_pred CCCCCCeEEEEEeeC-CcEEEEEeCCCcEEEEECC
Q 004924 610 DKMDLPITYATYSCD-GKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 610 ~~h~~~v~~l~~spd-g~~l~sgs~dg~I~iwd~~ 643 (723)
..|...|+++.|.|. .+.|++|+.||.|++|.+.
T Consensus 277 ~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 277 GAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 357889999999995 6789999999999999874
No 29
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.6e-34 Score=279.36 Aligned_cols=274 Identities=18% Similarity=0.209 Sum_probs=235.0
Q ss_pred ccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCccc
Q 004924 330 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 409 (723)
Q Consensus 330 ~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~ 409 (723)
...+.|+|+.|++|+..|.+.+|+... -.+..+ +. .|.+.|.++.||++|.+++||+.+|.|++|+..-...
T Consensus 101 ~v~WtPeGRRLltgs~SGEFtLWNg~~----fnFEti-lQ--aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV- 172 (464)
T KOG0284|consen 101 VVRWTPEGRRLLTGSQSGEFTLWNGTS----FNFETI-LQ--AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV- 172 (464)
T ss_pred eEEEcCCCceeEeecccccEEEecCce----eeHHHH-hh--hhcccceeEEEccCCCEEEEcCCCceEEecccchhhh-
Confidence 355999999999999999999999752 222222 33 4999999999999999999999999999998542111
Q ss_pred ccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEE
Q 004924 410 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 486 (723)
Q Consensus 410 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~ 486 (723)
. . ...+|...|.+++|+ +..+++|+ ||+|+|||....+..+.+.+|.-.|.+++|
T Consensus 173 -----k-------------~----~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdW 230 (464)
T KOG0284|consen 173 -----K-------------I----IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDW 230 (464)
T ss_pred -----H-------------H----hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceecc
Confidence 0 0 011466999999999 88899999 999999999999888899999999999999
Q ss_pred cCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecC
Q 004924 487 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 565 (723)
Q Consensus 487 ~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~ 565 (723)
+|.. .+++|+.|..|++||.++|+++.++.+|...|..+.|+|++++|+++|.|..++++|+++. +.+. ...+
T Consensus 231 HP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m-----kEl~-~~r~ 304 (464)
T KOG0284|consen 231 HPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM-----KELF-TYRG 304 (464)
T ss_pred CCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-----HHHH-Hhhc
Confidence 9999 9999999999999999999999999999999999999999999999999999999999962 3344 3456
Q ss_pred CCCCCCCeEEEEEccCCCEEEE--EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECC
Q 004924 566 LVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 566 ~~~~~~~v~~l~~spdg~~l~~--s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~ 643 (723)
|. ..|+++.|+|-..-|++ |.||.|..|.+...+++..+. .+|...|++++|+|=|..|++|+.|.++++|...
T Consensus 305 Hk---kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 305 HK---KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ch---hhheeeccccccccceeeccCCCceEEEeccccccccCCC-cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 76 79999999998765554 599999999998666666664 4789999999999999999999999999999754
No 30
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.3e-32 Score=270.93 Aligned_cols=274 Identities=15% Similarity=0.150 Sum_probs=237.4
Q ss_pred cccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCC
Q 004924 327 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 406 (723)
Q Consensus 327 ~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~ 406 (723)
+....+++.+|..||+|+.||.++||+..+ .....+ . .|.++|.++.|+.+|+||++++.|+++.+||..++
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G----~l~~tl--~--~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g 308 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDG----NLISTL--G--QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG 308 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCc----hhhhhh--h--ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc
Confidence 344455888999999999999999999873 333333 2 39999999999999999999999999999997643
Q ss_pred cccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEE
Q 004924 407 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF 484 (723)
Q Consensus 407 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l 484 (723)
.. .+.+. -|..+-..|.|- ...+++++ ||.|+|+.+....++.++.+|.+.|.++
T Consensus 309 ~~---------------------~q~f~--~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~al 365 (524)
T KOG0273|consen 309 TV---------------------KQQFE--FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNAL 365 (524)
T ss_pred eE---------------------EEeee--eccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEE
Confidence 22 22111 366666788998 88889888 9999999999999999999999999999
Q ss_pred EEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCC---------CEEEEEeCCCcEEEEeCCCCcee
Q 004924 485 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL---------NVLVSSGADAQLCVWDAVGWKKL 554 (723)
Q Consensus 485 ~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg---------~~l~s~s~dg~I~vwd~~~~~~~ 554 (723)
.|+|.| .|++++.|++++||+...+.....+.+|...|..+.|+|+| ..+++++.|++|++||+..|
T Consensus 366 k~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g--- 442 (524)
T KOG0273|consen 366 KWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG--- 442 (524)
T ss_pred EECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---
Confidence 999999 99999999999999999999999999999999999999965 37999999999999999996
Q ss_pred eceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeC
Q 004924 555 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 633 (723)
Q Consensus 555 ~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~ 633 (723)
.++.++. .|. .+|.+++|+|+|+++++| .||.|.+|++++++.++.+.. .+.|..++|+.+|.+|.++-.
T Consensus 443 --v~i~~f~-kH~---~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~---~~~Ifel~Wn~~G~kl~~~~s 513 (524)
T KOG0273|consen 443 --VPIHTLM-KHQ---EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG---TGGIFELCWNAAGDKLGACAS 513 (524)
T ss_pred --ceeEeec-cCC---CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC---CCeEEEEEEcCCCCEEEEEec
Confidence 4555333 454 799999999999999995 999999999999999999864 677999999999999999999
Q ss_pred CCcEEEEECC
Q 004924 634 SGHVKVFDTS 643 (723)
Q Consensus 634 dg~I~iwd~~ 643 (723)
||.+++.|++
T Consensus 514 d~~vcvldlr 523 (524)
T KOG0273|consen 514 DGSVCVLDLR 523 (524)
T ss_pred CCCceEEEec
Confidence 9999998875
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.4e-32 Score=295.26 Aligned_cols=288 Identities=25% Similarity=0.308 Sum_probs=242.2
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 450 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 450 (723)
|...|.++.|+|+|+++++++.|+.+++|+..... + ...... .+|...|.+++|+ +.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~---------------~----~~~~~l--~~h~~~v~~~~fs~d~~ 216 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIK---------------S----NLLREL--SGHTRGVSDVAFSPDGS 216 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeeccccc---------------c----hhhccc--cccccceeeeEECCCCc
Confidence 48899999999999999999999999999975321 0 011111 2799999999999 78
Q ss_pred EEEEEe-CCcEEEEEc-CCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEE
Q 004924 451 HLFSAS-GGKISIFSL-ETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 527 (723)
Q Consensus 451 ~l~s~s-dg~I~vwd~-~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~ 527 (723)
++++++ |++|++||+ ..+..++++.+|...|++++|+|++ .+++|+.|++|++||++++++...+.+|...|++++|
T Consensus 217 ~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f 296 (456)
T KOG0266|consen 217 YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAF 296 (456)
T ss_pred EEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEE
Confidence 999999 999999999 5668999999999999999999999 9999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEE
Q 004924 528 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ 606 (723)
Q Consensus 528 spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~ 606 (723)
++++..+++++.|+.|++||+.++... ++. ...++.... +++++.|+|++.+++++ .|+.+++||+..+.....
T Consensus 297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~-~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~ 371 (456)
T KOG0266|consen 297 SPDGNLLVSASYDGTIRVWDLETGSKL---CLK-LLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT 371 (456)
T ss_pred CCCCCEEEEcCCCccEEEEECCCCcee---eee-cccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee
Confidence 999999999999999999999997532 223 222333211 69999999999999995 778999999999999888
Q ss_pred ecCCCCC-CCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEE
Q 004924 607 LVPDKMD-LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 685 (723)
Q Consensus 607 ~~~~~h~-~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 685 (723)
+.++... ..+.+...++.+.++++|+.|+.|++|+..++..+..+..+ .... +..+.|+| ..+++++++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h-------~~~~--~~~~~~~~-~~~~~~s~s 441 (456)
T KOG0266|consen 372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH-------SKAA--VSDLSSHP-TENLIASSS 441 (456)
T ss_pred ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC-------CCCc--eeccccCC-CcCeeeecC
Confidence 8764222 24555566789999999999999999999998888887643 1222 44899999 789999998
Q ss_pred --CCCcEEEEecC
Q 004924 686 --TNGRVHVIEPL 696 (723)
Q Consensus 686 --~Dg~v~iWd~~ 696 (723)
.|+.+++|...
T Consensus 442 ~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 442 FEGDGLIRLWKYD 454 (456)
T ss_pred cCCCceEEEecCC
Confidence 78999999864
No 32
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-31 Score=280.73 Aligned_cols=348 Identities=14% Similarity=0.144 Sum_probs=271.5
Q ss_pred ccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCC--EEEEEECCCcEEEEeccC
Q 004924 328 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD--FLVALTQTATHKLWKWQS 405 (723)
Q Consensus 328 ~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~--~las~s~dg~i~iWd~~~ 405 (723)
....++.|.|..+++|+.|+.+++||+. .+.|... |.| |.+.|+++.|.|+-. .|++|+.|+++++||...
T Consensus 108 vi~ma~~~~g~LlAtggaD~~v~VWdi~----~~~~th~-fkG--~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~ 180 (775)
T KOG0319|consen 108 VITMAFDPTGTLLATGGADGRVKVWDIK----NGYCTHS-FKG--HGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLND 180 (775)
T ss_pred eEEEEEcCCCceEEeccccceEEEEEee----CCEEEEE-ecC--CCceEEEEEeCCccchhheeecCCCceEEEEEccc
Confidence 3344578889999999999999999998 4666665 666 999999999999765 488999999999999984
Q ss_pred Ccc------------------cccccceee----eeEEEecCCCeeeeecc-----------------------------
Q 004924 406 NKQ------------------SLEEENVNM----ESQLYQPSSKLVMTNDI----------------------------- 434 (723)
Q Consensus 406 ~~~------------------~~g~~~~~~----~~~~~~~~~~~~~~~~~----------------------------- 434 (723)
... .++....+. .+.+||..+.+...+..
T Consensus 181 ~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g 260 (775)
T KOG0319|consen 181 KRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSG 260 (775)
T ss_pred CchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCc
Confidence 432 111111111 13667654322110000
Q ss_pred ----------------------------------------------------------CCCCCCCeEEEEEe---CCEEE
Q 004924 435 ----------------------------------------------------------AADPKDSISCFALR---GSHLF 453 (723)
Q Consensus 435 ----------------------------------------------------------~~~h~~~V~~v~~s---~~~l~ 453 (723)
.-|..+.|.+++|- .+++|
T Consensus 261 ~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~la 340 (775)
T KOG0319|consen 261 VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLA 340 (775)
T ss_pred eEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEE
Confidence 00123456667766 46788
Q ss_pred EEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCC----cEEEEEcCcCCcEEEEEE
Q 004924 454 SAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK----KTKAKLKGHQNRITCLAY 527 (723)
Q Consensus 454 s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~----~~~~~l~~~~~~i~~l~~ 527 (723)
+++ .+.+++|+..+..+. .+.+|...|.+++...+| +|++|+.|+++++|.++++ -++....+|.+.|.++++
T Consensus 341 VATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~ 419 (775)
T KOG0319|consen 341 VATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAG 419 (775)
T ss_pred EEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeee
Confidence 888 688888887776665 778999999999977788 9999999999999977543 344566889999999999
Q ss_pred cCCC-CEEEEEeCCCcEEEEeCCCCceeeceeee----eeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCC
Q 004924 528 SLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLH----SFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL 601 (723)
Q Consensus 528 spdg-~~l~s~s~dg~I~vwd~~~~~~~~~~~l~----~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~ 601 (723)
+..+ .+++++|.|+++++|++...+... .++. .....|. ..|++++++|+.+.+++ |.|.+.+||+++.+
T Consensus 420 ~~~~asffvsvS~D~tlK~W~l~~s~~~~-~~~~~~~~~t~~aHd---KdIN~Vaia~ndkLiAT~SqDktaKiW~le~~ 495 (775)
T KOG0319|consen 420 SKLGASFFVSVSQDCTLKLWDLPKSKETA-FPIVLTCRYTERAHD---KDINCVAIAPNDKLIATGSQDKTAKIWDLEQL 495 (775)
T ss_pred cccCccEEEEecCCceEEEecCCCccccc-ccceehhhHHHHhhc---ccccceEecCCCceEEecccccceeeecccCc
Confidence 7755 679999999999999997622111 1111 1334566 79999999999999999 59999999999988
Q ss_pred ceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEE
Q 004924 602 NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 681 (723)
Q Consensus 602 ~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~l 681 (723)
....++. +|...|+++.|+|..+.++++|.|++|+||.+.+..+++++.+ |.. . +..+.|-. ++..|
T Consensus 496 ~l~~vLs--GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG-------H~~-a--Vlra~F~~-~~~ql 562 (775)
T KOG0319|consen 496 RLLGVLS--GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG-------HTS-A--VLRASFIR-NGKQL 562 (775)
T ss_pred eEEEEee--CCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC-------ccc-e--eEeeeeee-CCcEE
Confidence 8888886 5799999999999999999999999999999999999999974 323 2 55899998 89999
Q ss_pred EEEECCCcEEEEecCCCce
Q 004924 682 ALGLTNGRVHVIEPLESEV 700 (723)
Q Consensus 682 as~s~Dg~v~iWd~~~~~~ 700 (723)
+||+.||-+++|++++++|
T Consensus 563 iS~~adGliKlWnikt~eC 581 (775)
T KOG0319|consen 563 ISAGADGLIKLWNIKTNEC 581 (775)
T ss_pred EeccCCCcEEEEeccchhh
Confidence 9999999999999999864
No 33
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3e-32 Score=289.68 Aligned_cols=241 Identities=17% Similarity=0.219 Sum_probs=209.1
Q ss_pred CCCcccccccCCCCCEEEEEeCCCeEEEEeecccC----------------------------CCCceeEEecCCCCCCC
Q 004924 324 DNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLIN----------------------------EPSECRTLLLPDNSFGG 375 (723)
Q Consensus 324 ~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~----------------------------~~~~~~~~~l~~~~h~~ 375 (723)
.+......++++|++.+|.|-.|..|++|.+...+ ..+..+ ++ .||.+
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~--~L--~GH~G 452 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR--TL--YGHSG 452 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeE--Ee--ecCCC
Confidence 34455567799999999999999999999988310 011111 12 35999
Q ss_pred ceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEE
Q 004924 376 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF 453 (723)
Q Consensus 376 ~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~ 453 (723)
+|..++|+|+.++|++||.|+++|+|.+.+..+ ...|. ||..+|+++.|+ |-|+|
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~----------~V~y~-------------GH~~PVwdV~F~P~GyYFa 509 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC----------LVIYK-------------GHLAPVWDVQFAPRGYYFA 509 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeeccccee----------EEEec-------------CCCcceeeEEecCCceEEE
Confidence 999999999999999999999999999875433 11111 799999999999 99999
Q ss_pred EEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCC
Q 004924 454 SAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL 531 (723)
Q Consensus 454 s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg 531 (723)
+++ |++-++|.....+..+.+.+|...|.|+.|+|+. ++++||.|.+|++||+.+|..++.|.||.++|.+++|+|+|
T Consensus 510 tas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~G 589 (707)
T KOG0263|consen 510 TASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCG 589 (707)
T ss_pred ecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCC
Confidence 999 9999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCC
Q 004924 532 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT 600 (723)
Q Consensus 532 ~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~ 600 (723)
++|++|+.||.|.+||+.++.. +. ...+|. +.|.++.|+.+|..|++ |.|.+|++||+..
T Consensus 590 r~LaSg~ed~~I~iWDl~~~~~-----v~-~l~~Ht---~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 590 RYLASGDEDGLIKIWDLANGSL-----VK-QLKGHT---GTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ceEeecccCCcEEEEEcCCCcc-----hh-hhhccc---CceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999999999643 33 244565 89999999999999999 5999999999864
No 34
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.1e-30 Score=307.22 Aligned_cols=295 Identities=13% Similarity=0.161 Sum_probs=231.9
Q ss_pred CCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---
Q 004924 372 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 448 (723)
Q Consensus 372 ~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--- 448 (723)
.|.+.|++++|+|+|+++|+|+.|++|+||+...... .+.... ...... .+...|.+++|+
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~-~~~~~~------------~~~~~~---~~~~~v~~l~~~~~~ 544 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIK-DGRDIH------------YPVVEL---ASRSKLSGICWNSYI 544 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccc-cccccc------------cceEEe---cccCceeeEEeccCC
Confidence 3899999999999999999999999999999753211 010000 000000 245678999998
Q ss_pred CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcC-CC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEE
Q 004924 449 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 525 (723)
Q Consensus 449 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p-~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l 525 (723)
+.+|++++ ||+|++||+.+++.+..+.+|...|++++|+| ++ .|++|+.||.|++||++++..+..+..+ ..+.++
T Consensus 545 ~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v 623 (793)
T PLN00181 545 KSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCV 623 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEE
Confidence 67899999 99999999999999999999999999999997 66 9999999999999999999998888754 679999
Q ss_pred EEc-CCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCC--
Q 004924 526 AYS-LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-- 601 (723)
Q Consensus 526 ~~s-pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~-- 601 (723)
.|+ ++|.++++|+.||.|++||++++. .++. ...+|. ..|.++.|. ++.++++ +.|+.|++||++.+
T Consensus 624 ~~~~~~g~~latgs~dg~I~iwD~~~~~----~~~~-~~~~h~---~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~ 694 (793)
T PLN00181 624 QFPSESGRSLAFGSADHKVYYYDLRNPK----LPLC-TMIGHS---KTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSIS 694 (793)
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCC----ccce-EecCCC---CCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCcc
Confidence 995 579999999999999999998742 1233 234565 789999997 5677777 69999999999743
Q ss_pred ----ceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeeccccc-CCC--CccCccceEEEEEe
Q 004924 602 ----NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA-QPG--TISLELYPLVIAAH 674 (723)
Q Consensus 602 ----~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~-~~g--~~~~~v~~~~v~~s 674 (723)
.++..+. +|...+..++|+|++.+|++|+.||.|++|+......+..+...... ..+ ...+...+.+++|+
T Consensus 695 ~~~~~~l~~~~--gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws 772 (793)
T PLN00181 695 GINETPLHSFM--GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWR 772 (793)
T ss_pred ccCCcceEEEc--CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEc
Confidence 4556665 46888999999999999999999999999998877655444321100 000 01112235599999
Q ss_pred cCCCCEEEEEECCCcEEEEec
Q 004924 675 PLEPNRIALGLTNGRVHVIEP 695 (723)
Q Consensus 675 p~d~~~las~s~Dg~v~iWd~ 695 (723)
| ++.+|++|+.||.|+||++
T Consensus 773 ~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 773 G-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred C-CCCeEEEecCCCcEEEEec
Confidence 9 8999999999999999986
No 35
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-31 Score=245.43 Aligned_cols=277 Identities=12% Similarity=0.091 Sum_probs=232.4
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 450 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 450 (723)
|.++|..+.|+-||+|.++|+.|.+|++|+.. .|.+++++. +|...|..++.+ +.
T Consensus 16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~---------------------rg~liktYs--ghG~EVlD~~~s~Dns 72 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPL---------------------RGALIKTYS--GHGHEVLDAALSSDNS 72 (307)
T ss_pred cccceEEEEEccCCCEEEEcCCCceEEeeccc---------------------ccceeeeec--CCCceeeecccccccc
Confidence 89999999999999999999999999998754 344454444 799999999988 77
Q ss_pred EEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCC--CcEEEEEcCcCCcEEEEE
Q 004924 451 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT--KKTKAKLKGHQNRITCLA 526 (723)
Q Consensus 451 ~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~--~~~~~~l~~~~~~i~~l~ 526 (723)
.+++|+ |..|.+||+.+|+..+.+.+|...|+.+.|+.+. .+++|+.|.++++||.++ .++++.+......|.++.
T Consensus 73 kf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~ 152 (307)
T KOG0316|consen 73 KFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSID 152 (307)
T ss_pred ccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEE
Confidence 888888 9999999999999999999999999999999999 999999999999999876 468888888888899988
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeE
Q 004924 527 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTS 605 (723)
Q Consensus 527 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~ 605 (723)
.+ +..++.|+.||+++.||++.|.... -..+ .+|++++|++|++..++ +-|+++++.|-.+|+.+.
T Consensus 153 v~--~heIvaGS~DGtvRtydiR~G~l~s------Dy~g-----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~ 219 (307)
T KOG0316|consen 153 VA--EHEIVAGSVDGTVRTYDIRKGTLSS------DYFG-----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLK 219 (307)
T ss_pred ec--ccEEEeeccCCcEEEEEeecceeeh------hhcC-----CcceeEEecCCCCEEEEeeccceeeecccchhHHHH
Confidence 86 4679999999999999999874321 1122 68999999999998887 699999999999999999
Q ss_pred EecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEE
Q 004924 606 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 685 (723)
Q Consensus 606 ~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 685 (723)
.++++.....-..++++.....+++|++||.|++||+.....+..+.. ...+.++++++||+. .-++++.
T Consensus 220 sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~---------~~~v~v~dl~~hp~~-~~f~~A~ 289 (307)
T KOG0316|consen 220 SYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV---------VSTVIVTDLSCHPTM-DDFITAT 289 (307)
T ss_pred HhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc---------CCceeEEeeecccCc-cceeEec
Confidence 998755455566778888888999999999999999999998888763 334667799999954 4455553
Q ss_pred CCCcEEEEecC
Q 004924 686 TNGRVHVIEPL 696 (723)
Q Consensus 686 ~Dg~v~iWd~~ 696 (723)
++.+..|--.
T Consensus 290 -~~~~~~~~~~ 299 (307)
T KOG0316|consen 290 -GHGDLFWYQE 299 (307)
T ss_pred -CCceeceeeh
Confidence 3456666543
No 36
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.7e-30 Score=265.55 Aligned_cols=277 Identities=23% Similarity=0.327 Sum_probs=237.0
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 450 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 450 (723)
|.+.|.+++|+|+++++++++.||.+.+|++.+... ..... .|...+..+.|+ ++
T Consensus 8 h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~---------------------~~~~~--~~~~~i~~~~~~~~~~ 64 (289)
T cd00200 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL---------------------LRTLK--GHTGPVRDVAASADGT 64 (289)
T ss_pred cCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc---------------------EEEEe--cCCcceeEEEECCCCC
Confidence 999999999999999999999999999999764221 11111 588888899999 66
Q ss_pred EEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEc
Q 004924 451 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 528 (723)
Q Consensus 451 ~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~s 528 (723)
++++++ +|.|++|++.+++....+..|...+.++.|++++ .+++++.+|.|.+||+.+++....+..|...+.++.|+
T Consensus 65 ~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 144 (289)
T cd00200 65 YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS 144 (289)
T ss_pred EEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEc
Confidence 899999 9999999999988888898999899999999999 88888889999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEe
Q 004924 529 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 607 (723)
Q Consensus 529 pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~ 607 (723)
|++.++++++.|+.|++||+++++. +..+ ..|. ..+.++.|+|+++.+++ +.++.|++||+++++.+..+
T Consensus 145 ~~~~~l~~~~~~~~i~i~d~~~~~~-----~~~~-~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 145 PDGTFVASSSQDGTIKLWDLRTGKC-----VATL-TGHT---GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred CcCCEEEEEcCCCcEEEEEcccccc-----ceeE-ecCc---cccceEEECCCcCEEEEecCCCcEEEEECCCCceecch
Confidence 9999998888899999999987532 2322 2443 58999999999988887 47999999999988887777
Q ss_pred cCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECC
Q 004924 608 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 687 (723)
Q Consensus 608 ~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D 687 (723)
. .|...+.+++|+|++.++++++.||.|++|+..+++....+..+ ... +.+++|+| ++.++++++.|
T Consensus 216 ~--~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--------~~~--i~~~~~~~-~~~~l~~~~~d 282 (289)
T cd00200 216 R--GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--------TNS--VTSLAWSP-DGKRLASGSAD 282 (289)
T ss_pred h--hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--------CCc--EEEEEECC-CCCEEEEecCC
Confidence 5 35779999999999999999888999999999998887777522 333 44999999 78999999999
Q ss_pred CcEEEEe
Q 004924 688 GRVHVIE 694 (723)
Q Consensus 688 g~v~iWd 694 (723)
|.+++|+
T Consensus 283 ~~i~iw~ 289 (289)
T cd00200 283 GTIRIWD 289 (289)
T ss_pred CeEEecC
Confidence 9999996
No 37
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=6.1e-32 Score=249.77 Aligned_cols=294 Identities=15% Similarity=0.165 Sum_probs=246.5
Q ss_pred CCCCCceEEEEEeC---CCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEE
Q 004924 371 NSFGGRVVRLIYSH---SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 447 (723)
Q Consensus 371 ~~h~~~V~~l~fsp---dg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 447 (723)
+||+.+|..++||| +|-+|++++.||.-.+-+ .++|..+-++. +|.++|++...
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~---------------------g~tgdwigtfe--ghkgavw~~~l 67 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRN---------------------GDTGDWIGTFE--GHKGAVWSATL 67 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhcc---------------------CCCCCcEEeee--ccCcceeeeec
Confidence 35999999999985 899999999998765533 34455554444 89999999998
Q ss_pred e-C-CEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCC-cEEEEEcCcCCcE
Q 004924 448 R-G-SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRI 522 (723)
Q Consensus 448 s-~-~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~-~~~~~l~~~~~~i 522 (723)
+ + ...|+++ |-+-++||.-+|..+..+ .|..-|.+++|+.|. .|++|+.++.++|||++.. .+...+.+|.+.|
T Consensus 68 ~~na~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~I 146 (334)
T KOG0278|consen 68 NKNATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGI 146 (334)
T ss_pred Cchhhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcc
Confidence 8 3 4556677 999999999999998888 467789999999999 9999999999999998864 4567889999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCc
Q 004924 523 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN 602 (723)
Q Consensus 523 ~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~ 602 (723)
..+.|....+.+++++.|++||+||.+++.. ++++... ..|+++.++++|++|.++..+.|..||..+..
T Consensus 147 r~v~wc~eD~~iLSSadd~tVRLWD~rTgt~-----v~sL~~~-----s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 147 RTVLWCHEDKCILSSADDKTVRLWDHRTGTE-----VQSLEFN-----SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFG 216 (334)
T ss_pred eeEEEeccCceEEeeccCCceEEEEeccCcE-----EEEEecC-----CCCcceeeccCCCEEEEecCceeEEecccccc
Confidence 9999999889999999999999999999754 3333333 57999999999999999999999999999999
Q ss_pred eeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEE
Q 004924 603 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 682 (723)
Q Consensus 603 ~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la 682 (723)
.++.++. ...|.+..++|+...+++|++|..++.||..+|..+..+. .||+ ++|. |+.|+| +|..-|
T Consensus 217 ~lKs~k~---P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n------kgh~-gpVh--cVrFSP-dGE~yA 283 (334)
T KOG0278|consen 217 LLKSYKM---PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN------KGHF-GPVH--CVRFSP-DGELYA 283 (334)
T ss_pred ceeeccC---ccccccccccCCCceEEecCcceEEEEEeccCCceeeecc------cCCC-CceE--EEEECC-CCceee
Confidence 9888865 6779999999999999999999999999999999887752 1443 4555 999999 999999
Q ss_pred EEECCCcEEEEecCCCce--eeecCCCCccc
Q 004924 683 LGLTNGRVHVIEPLESEV--EWGKLPFTDSR 711 (723)
Q Consensus 683 s~s~Dg~v~iWd~~~~~~--~w~~~~~~~~g 711 (723)
+||.||+|++|....++. .|....+.+.|
T Consensus 284 sGSEDGTirlWQt~~~~~~~~~~~~~~ed~~ 314 (334)
T KOG0278|consen 284 SGSEDGTIRLWQTTPGKTYGLWKCVKPEDDG 314 (334)
T ss_pred ccCCCceEEEEEecCCCchhhccccChhhhc
Confidence 999999999999877653 57665444433
No 38
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.98 E-value=1.3e-30 Score=247.45 Aligned_cols=274 Identities=16% Similarity=0.189 Sum_probs=225.6
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEE-ecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccc
Q 004924 332 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTL-LLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 410 (723)
Q Consensus 332 ~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~-~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~ 410 (723)
.|.|+|..+|+|+.|..|.+|++.+ .|..+ .+. +|.+.|..+.|.+|+..++++|.|.+++.||.++++.
T Consensus 54 ~F~P~gs~~aSgG~Dr~I~LWnv~g-----dceN~~~lk--gHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~-- 124 (338)
T KOG0265|consen 54 KFHPDGSCFASGGSDRAIVLWNVYG-----DCENFWVLK--GHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKR-- 124 (338)
T ss_pred EECCCCCeEeecCCcceEEEEeccc-----cccceeeec--cccceeEeeeeccCCCEEEEecCCceEEEEeccccee--
Confidence 3788999999999999999999863 33222 233 4999999999999999999999999999999875432
Q ss_pred cccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCE-EEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEE
Q 004924 411 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH-LFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 486 (723)
Q Consensus 411 g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~-l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~ 486 (723)
..... +|.+-|+++.-+ |.. +.+++ ||++++||+++...++++.. ...++++.|
T Consensus 125 -------------------~rk~k--~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f 182 (338)
T KOG0265|consen 125 -------------------IRKHK--GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGF 182 (338)
T ss_pred -------------------eehhc--cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEe
Confidence 22222 689999999877 554 55566 89999999998888877743 456889999
Q ss_pred cCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecC
Q 004924 487 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 565 (723)
Q Consensus 487 ~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~ 565 (723)
..++ .+.+|+-|+.|++||++.+.....+.||..+|+.+..+|+|.++.+-+.|.++++||++-..... .++. +..+
T Consensus 183 ~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~-R~v~-if~g 260 (338)
T KOG0265|consen 183 KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQ-RCVK-IFQG 260 (338)
T ss_pred cccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCC-ceEE-Eeec
Confidence 9999 99999999999999999999999999999999999999999999999999999999998642211 2233 3333
Q ss_pred CC-CCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEE
Q 004924 566 LV-PETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF 640 (723)
Q Consensus 566 ~~-~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iw 640 (723)
|. .........+|+|+++.+.+ +.|..+++||......+..+. +|.+.|.++.|+|....|.+++.|.+|++=
T Consensus 261 ~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp--Gh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 261 HIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP--GHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred chhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcC--CcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 32 10134567899999999988 599999999998878877765 689999999999999999999999999873
No 39
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=4.4e-31 Score=242.17 Aligned_cols=243 Identities=15% Similarity=0.216 Sum_probs=215.6
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEE
Q 004924 437 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 512 (723)
Q Consensus 437 ~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~ 512 (723)
+++++|.++.|+ |+|.++|+ |.+|++|+...|.+++++.+|...|..++.+.|+ .|++|+.|..|.+||+.+|+.+
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~ 94 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVD 94 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeee
Confidence 689999999999 99999888 9999999999999999999999999999999999 9999999999999999999999
Q ss_pred EEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCC
Q 004924 513 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG 591 (723)
Q Consensus 513 ~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg 591 (723)
+.|.+|.+.|+.+.|+.+...+++|+.|.++++||.++.. ..|++.+.... ..|.++..+. ..|++ +.||
T Consensus 95 Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s---~ePiQildea~----D~V~Si~v~~--heIvaGS~DG 165 (307)
T KOG0316|consen 95 RRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS---FEPIQILDEAK----DGVSSIDVAE--HEIVAGSVDG 165 (307)
T ss_pred eecccccceeeEEEecCcceEEEeccccceeEEEEcccCC---CCccchhhhhc----CceeEEEecc--cEEEeeccCC
Confidence 9999999999999999999999999999999999999853 35666443333 6788988874 45665 6999
Q ss_pred cEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEE
Q 004924 592 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 671 (723)
Q Consensus 592 ~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v 671 (723)
+++.||++.|+....+. ..+|++++|++|++..++++-|+++++.|-.+|+++..+.+| .+.-+-+.+
T Consensus 166 tvRtydiR~G~l~sDy~----g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGh--------kn~eykldc 233 (307)
T KOG0316|consen 166 TVRTYDIRKGTLSSDYF----GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGH--------KNMEYKLDC 233 (307)
T ss_pred cEEEEEeecceeehhhc----CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccc--------ccceeeeee
Confidence 99999999998876664 678999999999999999999999999999999999998854 334455677
Q ss_pred EEecCCCCEEEEEECCCcEEEEecCCCcee
Q 004924 672 AAHPLEPNRIALGLTNGRVHVIEPLESEVE 701 (723)
Q Consensus 672 ~~sp~d~~~las~s~Dg~v~iWd~~~~~~~ 701 (723)
+++. ...++++||+||.|++||+.++...
T Consensus 234 ~l~q-sdthV~sgSEDG~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 234 CLNQ-SDTHVFSGSEDGKVYFWDLVDETQI 262 (307)
T ss_pred eecc-cceeEEeccCCceEEEEEeccceee
Confidence 8887 5679999999999999999887643
No 40
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=7.3e-30 Score=268.31 Aligned_cols=244 Identities=16% Similarity=0.177 Sum_probs=207.3
Q ss_pred CCCCCCCeEEEEEe-C-CEEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcE
Q 004924 435 AADPKDSISCFALR-G-SHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT 511 (723)
Q Consensus 435 ~~~h~~~V~~v~~s-~-~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~ 511 (723)
.++|...|.+++++ + ..+++|+++.+++|+..+.++++++... .+.+..|.|.+ ++++|...|.+.+||+.+...
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l 446 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASL 446 (888)
T ss_pred eccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhh
Confidence 45799999999999 4 4455666899999999999999999754 78899999999 999999999999999999999
Q ss_pred EEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-----Cceeeceee---eeeecCCCCCCCCeEEEEEccCCC
Q 004924 512 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG-----WKKLCSKFL---HSFQTGLVPETTIVNHIQFHPDQI 583 (723)
Q Consensus 512 ~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~-----~~~~~~~~l---~~~~~~~~~~~~~v~~l~~spdg~ 583 (723)
+...+.|.+.|.+++.+||++.+++||.|.+|++||..- |...+...+ .++.- ...|.|+.+||||+
T Consensus 447 ~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel-----~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 447 VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL-----EDDVLCVSVSPDGK 521 (888)
T ss_pred hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec-----cccEEEEEEcCCCc
Confidence 999999999999999999999999999999999999753 111000001 11111 16899999999999
Q ss_pred EEEEE-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCc
Q 004924 584 HLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI 662 (723)
Q Consensus 584 ~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~ 662 (723)
+++++ -|.+++||-+.+.+....+. +|.-||.++..|||++.+++||.|..|++|-+.-|.+.+.+-.|
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLY--GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH-------- 591 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLY--GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH-------- 591 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeec--ccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc--------
Confidence 99998 99999999999988777765 57999999999999999999999999999999999998887532
Q ss_pred cCccceEEEEEecCCCCEEEEEECCCcEEEEecCCC
Q 004924 663 SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 663 ~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
++. ++++.|-| ....+.+||.|+.|+-||-..-
T Consensus 592 dDS--vm~V~F~P-~~~~FFt~gKD~kvKqWDg~kF 624 (888)
T KOG0306|consen 592 DDS--VMSVQFLP-KTHLFFTCGKDGKVKQWDGEKF 624 (888)
T ss_pred cCc--eeEEEEcc-cceeEEEecCcceEEeechhhh
Confidence 333 55999999 7889999999999999987643
No 41
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=5.2e-30 Score=280.70 Aligned_cols=278 Identities=18% Similarity=0.197 Sum_probs=232.7
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccc
Q 004924 331 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 410 (723)
Q Consensus 331 ~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~ 410 (723)
..++|+|+.+++++.++.+++|+...... ..... +. +|...|.+++|+|+|+++++++.|++++|||+..
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--~~~~~-l~--~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~----- 234 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKS--NLLRE-LS--GHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD----- 234 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccc--hhhcc-cc--ccccceeeeEECCCCcEEEEecCCceEEEeeccC-----
Confidence 45899999999999999999999964211 12222 34 4999999999999999999999999999999732
Q ss_pred cccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEc
Q 004924 411 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 487 (723)
Q Consensus 411 g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~ 487 (723)
.+..++.+. +|...|++++|+ ++.+++|+ |++|+|||++++++...+.+|.+.|++++|+
T Consensus 235 ---------------~~~~~~~l~--gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~ 297 (456)
T KOG0266|consen 235 ---------------DGRNLKTLK--GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFS 297 (456)
T ss_pred ---------------CCeEEEEec--CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEEC
Confidence 222333333 799999999999 88999999 9999999999999999999999999999999
Q ss_pred CCC-eEEEEECCCcEEEEeCCCCc--EEEEEcCcCCc--EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeee
Q 004924 488 PQD-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQNR--ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 562 (723)
Q Consensus 488 p~~-~l~sgs~dg~I~iwd~~~~~--~~~~l~~~~~~--i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~ 562 (723)
+++ .+++++.|+.|++||+.++. +...+.++... ++++.|+|++.++++++.|+.+++||+..+... . .
T Consensus 298 ~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~-----~-~ 371 (456)
T KOG0266|consen 298 PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV-----G-T 371 (456)
T ss_pred CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce-----e-e
Confidence 999 99999999999999999998 66778776655 999999999999999999999999999985432 2 2
Q ss_pred ecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCC-CCCeEEEEEeeCCcEEEEEe--CCCcEE
Q 004924 563 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM-DLPITYATYSCDGKCIYVSC--KSGHVK 638 (723)
Q Consensus 563 ~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h-~~~v~~l~~spdg~~l~sgs--~dg~I~ 638 (723)
..+|......+.+...++.++++++ +.|+.|++||+.++..+..+.. | ...+..++++|..+++++++ .|+.++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~--h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~ 449 (456)
T KOG0266|consen 372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEG--HSKAAVSDLSSHPTENLIASSSFEGDGLIR 449 (456)
T ss_pred ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcC--CCCCceeccccCCCcCeeeecCcCCCceEE
Confidence 2233310024556666889999999 4999999999999888777764 5 78899999999999999988 689999
Q ss_pred EEECC
Q 004924 639 VFDTS 643 (723)
Q Consensus 639 iwd~~ 643 (723)
+|...
T Consensus 450 ~w~~~ 454 (456)
T KOG0266|consen 450 LWKYD 454 (456)
T ss_pred EecCC
Confidence 99764
No 42
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=5.2e-29 Score=255.96 Aligned_cols=268 Identities=24% Similarity=0.284 Sum_probs=228.4
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccc
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 412 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~ 412 (723)
++|+++++++++.+|.+.+|++.+ ...... +.. |...+.++.|+|+++++++++.||.+.+|++.....
T Consensus 17 ~~~~~~~l~~~~~~g~i~i~~~~~----~~~~~~-~~~--~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~---- 85 (289)
T cd00200 17 FSPDGKLLATGSGDGTIKVWDLET----GELLRT-LKG--HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC---- 85 (289)
T ss_pred EcCCCCEEEEeecCcEEEEEEeeC----CCcEEE-Eec--CCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc----
Confidence 778899999999999999999985 222222 333 888999999999999999999999999999874211
Q ss_pred cceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCC
Q 004924 413 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ 489 (723)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~ 489 (723)
... .. .|...+.++.|+ +.++++++ +|.|.+||+.+++....+..|...+.+++|+|+
T Consensus 86 -~~~----------------~~--~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 146 (289)
T cd00200 86 -VRT----------------LT--GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD 146 (289)
T ss_pred -eEE----------------Ee--ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCc
Confidence 111 11 478899999999 67888888 999999999999999999889999999999999
Q ss_pred C-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCC
Q 004924 490 D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP 568 (723)
Q Consensus 490 ~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~ 568 (723)
+ .+++++.|+.|++||+++++.+..+..|...+.++.|+|+++.+++++.|+.|++||++.+.. +. ....|.
T Consensus 147 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-----~~-~~~~~~- 219 (289)
T cd00200 147 GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC-----LG-TLRGHE- 219 (289)
T ss_pred CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce-----ec-chhhcC-
Confidence 9 888888899999999999999999999999999999999999999999999999999987432 22 122343
Q ss_pred CCCCeEEEEEccCCCEEEEEc-CCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEE
Q 004924 569 ETTIVNHIQFHPDQIHLLSIH-EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 641 (723)
Q Consensus 569 ~~~~v~~l~~spdg~~l~~s~-dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd 641 (723)
..+.+++|+|++.+++++. ++.|++||+.+++....+. .|...+.+++|+|+++++++++.||.|++|+
T Consensus 220 --~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 220 --NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS--GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred --CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc--ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 6899999999988888864 9999999999888887776 4678999999999999999999999999996
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.1e-30 Score=272.58 Aligned_cols=291 Identities=16% Similarity=0.228 Sum_probs=245.9
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 450 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 450 (723)
.+..|..++|+|...+++++-..|.|++||.+-+. ++..+. .|.++|..++|+ +.
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t---------------------li~rFd--eHdGpVRgv~FH~~qp 64 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT---------------------LIDRFD--EHDGPVRGVDFHPTQP 64 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhh---------------------HHhhhh--ccCCccceeeecCCCC
Confidence 57889999999999999999999999999976322 122111 699999999999 88
Q ss_pred EEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEc
Q 004924 451 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 528 (723)
Q Consensus 451 ~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~s 528 (723)
++++|+ |-.|+||+.++.+++.++.+|-+.|..+.|++.- +|+++|.|.+|+||+..+++++..+.||...|.|..|+
T Consensus 65 lFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh 144 (1202)
T KOG0292|consen 65 LFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH 144 (1202)
T ss_pred eEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC
Confidence 999999 8999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceee-----------------------ceeeeeeecCCCCCCCCeEEEEEccCCCEE
Q 004924 529 LSLNVLVSSGADAQLCVWDAVGWKKLC-----------------------SKFLHSFQTGLVPETTIVNHIQFHPDQIHL 585 (723)
Q Consensus 529 pdg~~l~s~s~dg~I~vwd~~~~~~~~-----------------------~~~l~~~~~~~~~~~~~v~~l~~spdg~~l 585 (723)
|....++++|-|.+|||||+.+-.... ...++.+..||. ..|+.++|+|.-..|
T Consensus 145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD---RGVNwaAfhpTlpli 221 (1202)
T KOG0292|consen 145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD---RGVNWAAFHPTLPLI 221 (1202)
T ss_pred CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc---cccceEEecCCcceE
Confidence 999999999999999999997522111 122344567888 799999999999999
Q ss_pred EEE-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccC
Q 004924 586 LSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISL 664 (723)
Q Consensus 586 ~~s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~ 664 (723)
++| .|..|++|.+..-+.-..-...+|.+.|.++-|+|...++++.|+|++|+|||+...+.++++.. ..+
T Consensus 222 VSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr--------end 293 (1202)
T KOG0292|consen 222 VSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR--------END 293 (1202)
T ss_pred EecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec--------cCC
Confidence 995 78899999987655333323346899999999999999999999999999999999998888853 245
Q ss_pred ccceEEEEEecCCCCEEEEEECCCcEEEEecCCCcee
Q 004924 665 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 701 (723)
Q Consensus 665 ~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~ 701 (723)
..| .++-|| ..+++|+| .|+.+.||.++...+-
T Consensus 294 RFW--~laahP-~lNLfAAg-HDsGm~VFkleRErpa 326 (1202)
T KOG0292|consen 294 RFW--ILAAHP-ELNLFAAG-HDSGMIVFKLERERPA 326 (1202)
T ss_pred eEE--EEEecC-Ccceeeee-cCCceEEEEEcccCce
Confidence 567 888899 77766655 6777889988754433
No 44
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.9e-29 Score=245.52 Aligned_cols=290 Identities=13% Similarity=0.146 Sum_probs=241.3
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 450 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 450 (723)
|++.|.+++.+|+.++++|||.|....+|+..++.. .... .+|+..|+++.|+ |.
T Consensus 63 H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~-----~~el------------------tgHKDSVt~~~Fshdgt 119 (399)
T KOG0296|consen 63 HTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF-----AGEL------------------TGHKDSVTCCSFSHDGT 119 (399)
T ss_pred cCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc-----eeEe------------------cCCCCceEEEEEccCce
Confidence 999999999999999999999999999999774332 1111 1799999999999 99
Q ss_pred EEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEc
Q 004924 451 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 528 (723)
Q Consensus 451 ~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~s 528 (723)
+||+|+ +|.|+||...++.....+...-..+.-+.|+|.+ .|++|+.||.+.+|.+.++...+.+.||+.++++=.|.
T Consensus 120 lLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~ 199 (399)
T KOG0296|consen 120 LLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFI 199 (399)
T ss_pred EEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccccc
Confidence 999999 9999999999999988887667778889999999 99999999999999999988889999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEe
Q 004924 529 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQL 607 (723)
Q Consensus 529 pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~ 607 (723)
|+|+.++++..||+|++||.++|.. +.++..... ....++.++..+..++.| .++.+++-+..+|+.+...
T Consensus 200 pdGKr~~tgy~dgti~~Wn~ktg~p-----~~~~~~~e~---~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~ 271 (399)
T KOG0296|consen 200 PDGKRILTGYDDGTIIVWNPKTGQP-----LHKITQAEG---LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCN 271 (399)
T ss_pred CCCceEEEEecCceEEEEecCCCce-----eEEeccccc---CcCCccccccccceeEeccCCccEEEEccccceEEEec
Confidence 9999999999999999999999743 333332222 567789999888888875 8889999998888887766
Q ss_pred cCC------CCC---CCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCC
Q 004924 608 VPD------KMD---LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 678 (723)
Q Consensus 608 ~~~------~h~---~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 678 (723)
.+. .+. ..|-++.||..-++.|+|+-||+|.|||+...++.+.... ... ++.+.|-+ .
T Consensus 272 n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~h---------e~~--V~~l~w~~--t 338 (399)
T KOG0296|consen 272 NGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEH---------EDG--VTKLKWLN--T 338 (399)
T ss_pred CCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccC---------CCc--eEEEEEcC--c
Confidence 520 122 3344555566678889999999999999999887776642 223 66999988 4
Q ss_pred CEEEEEECCCcEEEEecCCCceeeecCC
Q 004924 679 NRIALGLTNGRVHVIEPLESEVEWGKLP 706 (723)
Q Consensus 679 ~~las~s~Dg~v~iWd~~~~~~~w~~~~ 706 (723)
.+|++++.||.|+.||..+|+.+.....
T Consensus 339 ~~l~t~c~~g~v~~wDaRtG~l~~~y~G 366 (399)
T KOG0296|consen 339 DYLLTACANGKVRQWDARTGQLKFTYTG 366 (399)
T ss_pred chheeeccCceEEeeeccccceEEEEec
Confidence 6899999999999999999998765543
No 45
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.4e-30 Score=263.03 Aligned_cols=275 Identities=17% Similarity=0.256 Sum_probs=237.8
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 450 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 450 (723)
|++.|.++.|+|...+++++-.+|.|.|||.++... + +-++ -..-+|.+..|- .+
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm-----V-----ksfe-------------V~~~PvRa~kfiaRkn 68 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM-----V-----KSFE-------------VSEVPVRAAKFIARKN 68 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEeccccee-----e-----eeee-------------ecccchhhheeeeccc
Confidence 789999999999999999999999999999875332 1 1111 246678888888 78
Q ss_pred EEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCC-cEEEEEcCcCCcEEEEEE
Q 004924 451 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAY 527 (723)
Q Consensus 451 ~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~-~~~~~l~~~~~~i~~l~~ 527 (723)
++++|+ |..|+||+..+++.++.+..|.+-|.|++.+|.. .++++|.|-+|++||-+.+ .+.++|.||...|.+++|
T Consensus 69 Wiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~f 148 (794)
T KOG0276|consen 69 WIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAF 148 (794)
T ss_pred eEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEe
Confidence 999999 8999999999999999999999999999999999 9999999999999998764 678999999999999999
Q ss_pred cC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCC--CEEEEE-cCCcEEEEECCCCce
Q 004924 528 SL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--IHLLSI-HEGQIDVYEAPTLNH 603 (723)
Q Consensus 528 sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg--~~l~~s-~dg~I~vwd~~~~~~ 603 (723)
+| |.+.+++++-|++|+||.+.+. .+..+ ..+|. ..|+|+.+-+.| .+|+++ .|..|+|||..+..|
T Consensus 149 nPkD~ntFaS~sLDrTVKVWslgs~-----~~nfT-l~gHe---kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C 219 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSLGSP-----HPNFT-LEGHE---KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC 219 (794)
T ss_pred cCCCccceeeeeccccEEEEEcCCC-----CCcee-eeccc---cCcceEEeccCCCcceEEecCCCceEEEeecchHHH
Confidence 99 6688999999999999999773 34443 34777 799999998765 688885 788999999999999
Q ss_pred eEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEE
Q 004924 604 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 683 (723)
Q Consensus 604 ~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las 683 (723)
++++. +|...|..++|+|.-..+++|++||+++||+..+.++..++... ...+| |++.++ .+..++.
T Consensus 220 V~TLe--GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--------leRvW--~I~~~k-~~~~i~v 286 (794)
T KOG0276|consen 220 VQTLE--GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--------LERVW--CIAAHK-GDGKIAV 286 (794)
T ss_pred HHHhh--cccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--------CceEE--EEeecC-CCCeEEE
Confidence 99987 47999999999999999999999999999999999988887642 45677 999888 5667888
Q ss_pred EECCCcEEE
Q 004924 684 GLTNGRVHV 692 (723)
Q Consensus 684 ~s~Dg~v~i 692 (723)
|.++|.|.|
T Consensus 287 G~Deg~i~v 295 (794)
T KOG0276|consen 287 GFDEGSVTV 295 (794)
T ss_pred eccCCcEEE
Confidence 887776644
No 46
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=4.1e-31 Score=254.53 Aligned_cols=265 Identities=17% Similarity=0.234 Sum_probs=218.6
Q ss_pred CCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccce
Q 004924 336 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 415 (723)
Q Consensus 336 dg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~ 415 (723)
|...+++|..|++|+|||.+ ...|... +.| |++.|.|+.|. .+.+++||+|.+|+|||++++
T Consensus 206 DD~kiVSGlrDnTikiWD~n----~~~c~~~-L~G--HtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg--------- 267 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKN----SLECLKI-LTG--HTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG--------- 267 (499)
T ss_pred cchhhhcccccCceEEeccc----cHHHHHh-hhc--CCCcEEeeecc--ceEEEecCCCceEEEEeccCC---------
Confidence 44558999999999999998 4556554 555 99999999995 458999999999999997743
Q ss_pred eeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcCCCc---EEEEEeCCCCCeEEEEEcCCCe
Q 004924 416 NMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQ---TLATFANPPPIATYFILLPQDL 491 (723)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~I~vwd~~~~~---~~~~~~~~~~~v~~l~~~p~~~ 491 (723)
+++.++. +|..+|..+.|+++++++++ |.++.|||+.... +.+.+.+|...|+.+.|+.. +
T Consensus 268 ------------e~l~tli--hHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k-y 332 (499)
T KOG0281|consen 268 ------------EPLNTLI--HHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-Y 332 (499)
T ss_pred ------------chhhHHh--hhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc-e
Confidence 3344444 79999999999999999999 9999999997643 34556799999999988543 9
Q ss_pred EEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCC
Q 004924 492 FAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 571 (723)
Q Consensus 492 l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~ 571 (723)
+++++.|.+|++|++.+++.++++.+|...|.|+.+ .|+++++|+.|.+|++||+..| .++. +..||. .
T Consensus 333 IVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G-----~cLR-vLeGHE---e 401 (499)
T KOG0281|consen 333 IVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-----ACLR-VLEGHE---E 401 (499)
T ss_pred EEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc-----HHHH-HHhchH---H
Confidence 999999999999999999999999999999999887 4789999999999999999997 4455 567887 7
Q ss_pred CeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEE-------ecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECC
Q 004924 572 IVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQ-------LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 572 ~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~-------~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~ 643 (723)
-|.++.|. .+.+++ +.||+|+|||+.++..... .....|.+.|..+.| |...+++++.|.+|-|||..
T Consensus 402 LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 402 LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFL 477 (499)
T ss_pred hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcC
Confidence 89999997 567887 5999999999986543211 111246888999998 57789999999999999998
Q ss_pred CCcEE
Q 004924 644 TLELR 648 (723)
Q Consensus 644 ~~~~~ 648 (723)
++-.-
T Consensus 478 ~~~~~ 482 (499)
T KOG0281|consen 478 NGPPS 482 (499)
T ss_pred CCCcc
Confidence 87543
No 47
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=3.2e-29 Score=238.36 Aligned_cols=294 Identities=14% Similarity=0.161 Sum_probs=234.7
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcc-------cccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEE
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ-------SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF 445 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 445 (723)
|...+.+.+|||||.++|+||.|..|+|.|++.... ..|..... .-+++++. .|.+.|+++
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~----------hPvIRTlY--DH~devn~l 178 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQAR----------HPVIRTLY--DHVDEVNDL 178 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccC----------CceEeehh--hccCcccce
Confidence 999999999999999999999999999999873211 01111000 01233333 599999999
Q ss_pred EEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEe--CCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEE---c
Q 004924 446 ALR--GSHLFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL---K 516 (723)
Q Consensus 446 ~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~--~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l---~ 516 (723)
.|+ ...|++|+ |++|++||.......+.++ ....+|.++.|+|.| ++++|....++++||+++.++-..- .
T Consensus 179 ~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~ 258 (430)
T KOG0640|consen 179 DFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDD 258 (430)
T ss_pred eecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccc
Confidence 999 88999999 9999999997543333222 345679999999999 9999999999999999998776443 4
Q ss_pred CcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEE
Q 004924 517 GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDV 595 (723)
Q Consensus 517 ~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~v 595 (723)
+|.+.|+++.+++.|++.++++.||.|++||--++ +++.++...|.. ..|.+..|..+|+++++ |.|..+++
T Consensus 259 qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~-----rCv~t~~~AH~g--sevcSa~Ftkn~kyiLsSG~DS~vkL 331 (430)
T KOG0640|consen 259 QHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN-----RCVRTIGNAHGG--SEVCSAVFTKNGKYILSSGKDSTVKL 331 (430)
T ss_pred ccccceeEEEecCCccEEEEeccCCcEEeeccccH-----HHHHHHHhhcCC--ceeeeEEEccCCeEEeecCCcceeee
Confidence 58999999999999999999999999999997774 567777778876 88999999999999998 69999999
Q ss_pred EECCCCceeEEecCCCCC---CCeEEEEEeeCCcEEEEEeC-CCcEEEEECCCCcEEEEeecccccCCCCccCccceEEE
Q 004924 596 YEAPTLNHTSQLVPDKMD---LPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 671 (723)
Q Consensus 596 wd~~~~~~~~~~~~~~h~---~~v~~l~~spdg~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v 671 (723)
|.+.+++++..+.+.+-. ..-+...|.....|++.-.+ .+.+.-||.+++..+..+.. || .+.+. .+
T Consensus 332 WEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl------gH-n~a~R--~i 402 (430)
T KOG0640|consen 332 WEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL------GH-NGAVR--WI 402 (430)
T ss_pred eeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc------CC-CCCce--EE
Confidence 999999999999865322 22345677777788776544 47899999999877665543 54 44555 88
Q ss_pred EEecCCCCEEEEEECCCcEEEEec
Q 004924 672 AAHPLEPNRIALGLTNGRVHVIEP 695 (723)
Q Consensus 672 ~~sp~d~~~las~s~Dg~v~iWd~ 695 (723)
..+| .+.-+++||+|-..|+|--
T Consensus 403 ~HSP-~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 403 VHSP-VEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred EeCC-CCCceeeecccceeeeeee
Confidence 9999 7889999999999999964
No 48
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=3.6e-29 Score=242.39 Aligned_cols=272 Identities=14% Similarity=0.187 Sum_probs=232.1
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccc
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 412 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~ 412 (723)
+-|..+++++++.|++++|||+. .+.++.. ++| |...|..+++|+-..|+++++.|+.|+.||+...+.
T Consensus 159 vdP~n~wf~tgs~DrtikIwDla----tg~Lklt-ltG--hi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv---- 227 (460)
T KOG0285|consen 159 VDPGNEWFATGSADRTIKIWDLA----TGQLKLT-LTG--HIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV---- 227 (460)
T ss_pred eCCCceeEEecCCCceeEEEEcc----cCeEEEe-ecc--hhheeeeeeecccCceEEEecCCCeeEEEechhhhh----
Confidence 45667889999999999999999 4565544 776 999999999999999999999999999999874322
Q ss_pred cceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCC
Q 004924 413 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ 489 (723)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~ 489 (723)
++.+. ||-+.|.|++.. -+.|++|+ |.+++|||+++...+..+.+|...|..+.+.|.
T Consensus 228 -----------------IR~Yh--GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~ 288 (460)
T KOG0285|consen 228 -----------------IRHYH--GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT 288 (460)
T ss_pred -----------------HHHhc--cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecC
Confidence 22222 799999999999 78899999 999999999999999999999999999999998
Q ss_pred C-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCC
Q 004924 490 D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP 568 (723)
Q Consensus 490 ~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~ 568 (723)
+ .+++|+.|++|++||++.|+....+..|...|.+++.+|....+++++.| .|+-|++..|+. ++. ..+|.
T Consensus 289 dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f-----~~n-lsgh~- 360 (460)
T KOG0285|consen 289 DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEF-----LQN-LSGHN- 360 (460)
T ss_pred CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccch-----hhc-ccccc-
Confidence 8 99999999999999999999999999999999999999999999999877 578899988643 332 44665
Q ss_pred CCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecC---CC---CCCCeEEEEEeeCCcEEEEEeCCCcEEEEEC
Q 004924 569 ETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP---DK---MDLPITYATYSCDGKCIYVSCKSGHVKVFDT 642 (723)
Q Consensus 569 ~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~---~~---h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~ 642 (723)
..|.+++...||-++..+.+|.+..||.++|-..+.... ++ ....|.+.+|...|..|++|..|.+|++|.-
T Consensus 361 --~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 361 --AIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred --ceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence 789999999998766667889999999998866554421 11 2457899999999999999999999999975
Q ss_pred CC
Q 004924 643 ST 644 (723)
Q Consensus 643 ~~ 644 (723)
..
T Consensus 439 De 440 (460)
T KOG0285|consen 439 DE 440 (460)
T ss_pred cc
Confidence 43
No 49
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-28 Score=262.68 Aligned_cols=272 Identities=15% Similarity=0.179 Sum_probs=229.3
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCccccc
Q 004924 332 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 411 (723)
Q Consensus 332 ~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g 411 (723)
.|.|...++.++-..|.|++||..- +.+..- +.. |.++|..+.|+|++..++|||+|-.|+||+..+..+
T Consensus 16 sFHP~rPwILtslHsG~IQlWDYRM----~tli~r-Fde--HdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc--- 85 (1202)
T KOG0292|consen 16 SFHPKRPWILTSLHSGVIQLWDYRM----GTLIDR-FDE--HDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC--- 85 (1202)
T ss_pred ecCCCCCEEEEeecCceeeeehhhh----hhHHhh-hhc--cCCccceeeecCCCCeEEecCCccEEEEEeccccee---
Confidence 3788888999999999999999983 444333 444 999999999999999999999999999999764333
Q ss_pred ccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcC
Q 004924 412 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP 488 (723)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p 488 (723)
+.++. ||-+.|..+.|+ -.++++++ |.+|+||+..+++++..+.+|...|.|..|+|
T Consensus 86 ------------------lftL~--GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp 145 (1202)
T KOG0292|consen 86 ------------------LFTLL--GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP 145 (1202)
T ss_pred ------------------hhhhc--cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC
Confidence 33333 799999999999 67999999 89999999999999999999999999999999
Q ss_pred CC-eEEEEECCCcEEEEeCCC--------C-------------------c--EEEEEcCcCCcEEEEEEcCCCCEEEEEe
Q 004924 489 QD-LFAFGFDDSSILVHCPCT--------K-------------------K--TKAKLKGHQNRITCLAYSLSLNVLVSSG 538 (723)
Q Consensus 489 ~~-~l~sgs~dg~I~iwd~~~--------~-------------------~--~~~~l~~~~~~i~~l~~spdg~~l~s~s 538 (723)
.. .++++|-|.+|+|||+.. + . ....+.||...|+-++|+|.-..+++|+
T Consensus 146 tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~ 225 (1202)
T KOG0292|consen 146 TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGA 225 (1202)
T ss_pred ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecC
Confidence 88 999999999999999752 1 0 1245689999999999999999999999
Q ss_pred CCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeE
Q 004924 539 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPIT 617 (723)
Q Consensus 539 ~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~ 617 (723)
.|+.|++|.+...+ ...+. ...+|. ..|.++.|+|....+++ |.|++|+|||+...+.++++... ....+
T Consensus 226 DDRqVKlWrmnetK---aWEvD-tcrgH~---nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrre--ndRFW 296 (1202)
T KOG0292|consen 226 DDRQVKLWRMNETK---AWEVD-TCRGHY---NNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRE--NDRFW 296 (1202)
T ss_pred CcceeeEEEecccc---ceeeh-hhhccc---CCcceEEecCccceeEecCCCccEEEEecccccceeeeecc--CCeEE
Confidence 99999999987621 22333 356777 79999999999999998 79999999999999999999743 67889
Q ss_pred EEEEeeCCcEEEEEeCCCcEEEEECC
Q 004924 618 YATYSCDGKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 618 ~l~~spdg~~l~sgs~dg~I~iwd~~ 643 (723)
.++-+|..+++++|- |+-+.+|.++
T Consensus 297 ~laahP~lNLfAAgH-DsGm~VFkle 321 (1202)
T KOG0292|consen 297 ILAAHPELNLFAAGH-DSGMIVFKLE 321 (1202)
T ss_pred EEEecCCcceeeeec-CCceEEEEEc
Confidence 999999999877775 4445566655
No 50
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2.5e-30 Score=249.12 Aligned_cols=276 Identities=16% Similarity=0.196 Sum_probs=223.6
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEE
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL 452 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l 452 (723)
....|.|+.+. ...+++|..|++|+|||..+..+ ...+. ||++.|.|+.|....+
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c---------------------~~~L~--GHtGSVLCLqyd~rvi 250 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLEC---------------------LKILT--GHTGSVLCLQYDERVI 250 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHH---------------------HHhhh--cCCCcEEeeeccceEE
Confidence 46789999984 44589999999999999764322 22222 8999999999998899
Q ss_pred EEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCc---EEEEEcCcCCcEEEEEEc
Q 004924 453 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKK---TKAKLKGHQNRITCLAYS 528 (723)
Q Consensus 453 ~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~---~~~~l~~~~~~i~~l~~s 528 (723)
++|+ |.+|+|||+++|+++.++-+|...|..+.|+. |++++++.|.+|.+||+.... +.+.+.||...|+.+.|+
T Consensus 251 isGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n-g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd 329 (499)
T KOG0281|consen 251 VSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN-GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD 329 (499)
T ss_pred EecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC-CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc
Confidence 9999 99999999999999999999999999999974 489999999999999988754 335678999999999996
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEe
Q 004924 529 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 607 (723)
Q Consensus 529 pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~ 607 (723)
. +++++++.|.+|++|++.+++ .+. +..+|. ..|.|+.+. |+++++ ++|.+|++||+..|.++..+
T Consensus 330 ~--kyIVsASgDRTikvW~~st~e-----fvR-tl~gHk---RGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvL 396 (499)
T KOG0281|consen 330 D--KYIVSASGDRTIKVWSTSTCE-----FVR-TLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL 396 (499)
T ss_pred c--ceEEEecCCceEEEEecccee-----eeh-hhhccc---ccceehhcc--CeEEEecCCCceEEEEeccccHHHHHH
Confidence 4 699999999999999999964 344 445666 577777765 678888 49999999999999999888
Q ss_pred cCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEee----cccccCCCCccCccceEEEEEecCCCCEEEE
Q 004924 608 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN----LTAYAQPGTISLELYPLVIAAHPLEPNRIAL 683 (723)
Q Consensus 608 ~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~----~~~~~~~g~~~~~v~~~~v~~sp~d~~~las 683 (723)
. +|..-|.++.| |.+.+++|+.||+|++||+.++....... ..... . |.+.|. .+.|. ...+++
T Consensus 397 e--GHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv--~-hsgRVF--rLQFD---~fqIvs 464 (499)
T KOG0281|consen 397 E--GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV--E-HSGRVF--RLQFD---EFQIIS 464 (499)
T ss_pred h--chHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhh--h-ccceeE--EEeec---ceEEEe
Confidence 7 47889999999 57789999999999999998875432111 11010 1 344455 88884 478999
Q ss_pred EECCCcEEEEecCCCc
Q 004924 684 GLTNGRVHVIEPLESE 699 (723)
Q Consensus 684 ~s~Dg~v~iWd~~~~~ 699 (723)
++.|.+|-|||..++-
T Consensus 465 ssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 465 SSHDDTILIWDFLNGP 480 (499)
T ss_pred ccCCCeEEEEEcCCCC
Confidence 9999999999998764
No 51
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.6e-29 Score=269.74 Aligned_cols=271 Identities=16% Similarity=0.225 Sum_probs=208.6
Q ss_pred CCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcc----------------ccccc----ce--eee-----------
Q 004924 372 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ----------------SLEEE----NV--NME----------- 418 (723)
Q Consensus 372 ~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~----------------~~g~~----~~--~~~----------- 418 (723)
.|.+.||++.||+||+|||+||.||.|+||.+...+. ..+.. .. ...
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 4999999999999999999999999999999876221 00000 00 000
Q ss_pred -eE-EEecCCCeeee--eccCCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC--
Q 004924 419 -SQ-LYQPSSKLVMT--NDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-- 490 (723)
Q Consensus 419 -~~-~~~~~~~~~~~--~~~~~~h~~~V~~v~~s-~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-- 490 (723)
+. +......-+.. .....||.+.|.++.|+ +++|++++ |.+|++|++...+|++.| .|.+-|+|++|+|.+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPVDDR 423 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecccCCC
Confidence 00 00000000000 01123899999999999 99999999 999999999999999998 689999999999977
Q ss_pred eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCC
Q 004924 491 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 570 (723)
Q Consensus 491 ~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~ 570 (723)
+|++|+-||.|+||++...+.+.-.. -..-|++++|.|||+..++|+.+|.+++|++...+......+. .........
T Consensus 424 yFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~-~~~~Kk~~~ 501 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR-LHNKKKKQG 501 (712)
T ss_pred cEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe-eccCccccC
Confidence 99999999999999998766554433 4478999999999999999999999999999986554444443 111111111
Q ss_pred CCeEEEEEccCC--CEEEEEcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCC
Q 004924 571 TIVNHIQFHPDQ--IHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 645 (723)
Q Consensus 571 ~~v~~l~~spdg--~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~ 645 (723)
..|+.+.|.|.. +.|+++.|..|+|||.++..++..+++......-....|+.||++|++|++|..||+|+....
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 469999999765 377779999999999999999888886544556678899999999999999999999998543
No 52
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=4e-28 Score=285.57 Aligned_cols=281 Identities=14% Similarity=0.164 Sum_probs=220.6
Q ss_pred ccccCCCCCEEEEEeCCCeEEEEeecccCCCCc---eeEEecCCCCCCCceEEEEEeC-CCCEEEEEECCCcEEEEeccC
Q 004924 330 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSE---CRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQS 405 (723)
Q Consensus 330 ~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~---~~~~~l~~~~h~~~V~~l~fsp-dg~~las~s~dg~i~iWd~~~ 405 (723)
...|+|+|+++|+|+.|++|+||+.......+. .....+. +...|.+++|+| ++.+|++++.||+|++||+.+
T Consensus 488 ~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~---~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~ 564 (793)
T PLN00181 488 AIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA---SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR 564 (793)
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec---ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence 345899999999999999999999753110111 0111121 456899999987 478999999999999999764
Q ss_pred CcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCe
Q 004924 406 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA 481 (723)
Q Consensus 406 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v 481 (723)
+. .+.... +|.+.|++++|+ +.+|++|+ ||+|++||+.++..+..+..+ ..+
T Consensus 565 ~~---------------------~~~~~~--~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v 620 (793)
T PLN00181 565 SQ---------------------LVTEMK--EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANI 620 (793)
T ss_pred Ce---------------------EEEEec--CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCe
Confidence 21 111111 699999999997 67899999 999999999999998888754 578
Q ss_pred EEEEEcC-CC-eEEEEECCCcEEEEeCCCCc-EEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce-eece
Q 004924 482 TYFILLP-QD-LFAFGFDDSSILVHCPCTKK-TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK-LCSK 557 (723)
Q Consensus 482 ~~l~~~p-~~-~l~sgs~dg~I~iwd~~~~~-~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~-~~~~ 557 (723)
.++.|++ ++ .+++|+.||.|++||+++++ .+..+.+|...|.++.|. ++..+++++.|++|++||+..+.. ....
T Consensus 621 ~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~ 699 (793)
T PLN00181 621 CCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINET 699 (793)
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCc
Confidence 8999954 57 99999999999999998765 567788999999999997 678999999999999999975321 1112
Q ss_pred eeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEec-----------CCCCCCCeEEEEEeeCC
Q 004924 558 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLV-----------PDKMDLPITYATYSCDG 625 (723)
Q Consensus 558 ~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~-----------~~~h~~~v~~l~~spdg 625 (723)
++. ...+|. ..+.+++|+|++.+|++ +.|+.|++|+......+..+. ...+...|.+++|+|++
T Consensus 700 ~l~-~~~gh~---~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~ 775 (793)
T PLN00181 700 PLH-SFMGHT---NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS 775 (793)
T ss_pred ceE-EEcCCC---CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC
Confidence 344 344665 68899999999999998 589999999987655443321 11235679999999999
Q ss_pred cEEEEEeCCCcEEEEEC
Q 004924 626 KCIYVSCKSGHVKVFDT 642 (723)
Q Consensus 626 ~~l~sgs~dg~I~iwd~ 642 (723)
..|++|+.||.|+||++
T Consensus 776 ~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 776 STLVAANSTGNIKILEM 792 (793)
T ss_pred CeEEEecCCCcEEEEec
Confidence 99999999999999986
No 53
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.6e-28 Score=241.97 Aligned_cols=276 Identities=12% Similarity=0.110 Sum_probs=216.2
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCccccc
Q 004924 332 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 411 (723)
Q Consensus 332 ~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g 411 (723)
.||++|+++|+|+.|.+..||.+.... ..-...++.+ |..+|..+.||||.+||++|+.|..+++||+.++..
T Consensus 231 ~FS~nGkyLAsaSkD~Taiiw~v~~d~--~~kl~~tlvg--h~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~--- 303 (519)
T KOG0293|consen 231 QFSHNGKYLASASKDSTAIIWIVVYDV--HFKLKKTLVG--HSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL--- 303 (519)
T ss_pred EEcCCCeeEeeccCCceEEEEEEecCc--ceeeeeeeec--ccCceEEEEECCCCCeEEecCchHheeeccCCcchh---
Confidence 389999999999999999999987532 2112233555 999999999999999999999999999999875443
Q ss_pred ccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCC-CCCeEEEEEc
Q 004924 412 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP-PPIATYFILL 487 (723)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~-~~~v~~l~~~ 487 (723)
...... ++...+.+++|. |..+++|+ |+++..||++ |.....+++. ...|.+++..
T Consensus 304 ------------------~~~y~~-~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait 363 (519)
T KOG0293|consen 304 ------------------RHLYPS-GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAIT 363 (519)
T ss_pred ------------------hhhccc-CcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEc
Confidence 111111 356789999999 88899999 9999999986 4445555543 3568999999
Q ss_pred CCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCC
Q 004924 488 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 566 (723)
Q Consensus 488 p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~ 566 (723)
+|| .+++.+.|..|++++..+........ ...+|+++..+.||+++++.-.+..+++||+.... .+. -..||
T Consensus 364 ~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~-----lv~-kY~Gh 436 (519)
T KOG0293|consen 364 YDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENK-----LVR-KYFGH 436 (519)
T ss_pred CCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhh-----HHH-Hhhcc
Confidence 999 88888899999999988765554443 45689999999999999999999999999998632 222 12233
Q ss_pred CCCCCCeEEEEEcc-CCCEEEEE-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCC-cEEEEEeCCCcEEEEECC
Q 004924 567 VPETTIVNHIQFHP-DQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 567 ~~~~~~v~~l~~sp-dg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg-~~l~sgs~dg~I~iwd~~ 643 (723)
... .-+..-+|.- +..++++| .|+.|+||+..+|+++.++. +|...|.+++|+|.. ..+|+||.||+|+||...
T Consensus 437 kq~-~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls--GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 437 KQG-HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS--GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ccc-ceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec--CCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 310 2344445654 34777874 89999999999999999986 579999999999955 578899999999999876
Q ss_pred C
Q 004924 644 T 644 (723)
Q Consensus 644 ~ 644 (723)
.
T Consensus 514 ~ 514 (519)
T KOG0293|consen 514 D 514 (519)
T ss_pred c
Confidence 4
No 54
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=4.2e-28 Score=226.11 Aligned_cols=270 Identities=14% Similarity=0.183 Sum_probs=227.0
Q ss_pred CCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---
Q 004924 372 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 448 (723)
Q Consensus 372 ~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--- 448 (723)
+|...|.+++|+.+|+.|++|+.|+++.+|++..... .......+|.+.|-.++|.
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~---------------------~~~~~~~gh~~svdql~w~~~~ 76 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF---------------------RKELVYRGHTDSVDQLCWDPKH 76 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhh---------------------hhhhcccCCCcchhhheeCCCC
Confidence 4999999999999999999999999999999874322 0001112799999999998
Q ss_pred CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEE
Q 004924 449 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 526 (723)
Q Consensus 449 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~ 526 (723)
.+.+++++ |.+|++||+.++++........+.+ .+.|+|+| ++++++.|..|.+.|.++.+.....+ ....++.+.
T Consensus 77 ~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~ 154 (313)
T KOG1407|consen 77 PDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEIS 154 (313)
T ss_pred CcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeee
Confidence 77888888 9999999999999999887666666 68999999 99999999999999999887776554 445678889
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeE
Q 004924 527 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS 605 (723)
Q Consensus 527 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~ 605 (723)
|+.++.+++.....|+|.|..... .++++++ ..|. ....|+.|+|+|+++|+| .|..+.+||+...-+++
T Consensus 155 w~~~nd~Fflt~GlG~v~ILsyps-----Lkpv~si-~AH~---snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R 225 (313)
T KOG1407|consen 155 WNNSNDLFFLTNGLGCVEILSYPS-----LKPVQSI-KAHP---SNCICIEFDPDGRYFATGSADALVSLWDVDELICER 225 (313)
T ss_pred ecCCCCEEEEecCCceEEEEeccc-----ccccccc-ccCC---cceEEEEECCCCceEeeccccceeeccChhHhhhhe
Confidence 998888888877789999987765 3455544 3454 678899999999999994 89999999999888888
Q ss_pred EecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEE
Q 004924 606 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 685 (723)
Q Consensus 606 ~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 685 (723)
.+. .+.-+|..+.||.||++||+||+|..|-|=++++|..+..+.. .++.+ .|+||| ...+||.++
T Consensus 226 ~is--RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~---------~~~t~--tVAWHP-k~~LLAyA~ 291 (313)
T KOG1407|consen 226 CIS--RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC---------EGPTF--TVAWHP-KRPLLAYAC 291 (313)
T ss_pred eec--cccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec---------cCCce--eEEecC-CCceeeEEe
Confidence 886 4589999999999999999999999999999999999998863 55566 999999 788999887
Q ss_pred CC
Q 004924 686 TN 687 (723)
Q Consensus 686 ~D 687 (723)
+|
T Consensus 292 dd 293 (313)
T KOG1407|consen 292 DD 293 (313)
T ss_pred cC
Confidence 65
No 55
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=9.1e-29 Score=249.91 Aligned_cols=296 Identities=20% Similarity=0.243 Sum_probs=226.0
Q ss_pred cCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEE
Q 004924 368 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 447 (723)
Q Consensus 368 l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 447 (723)
+++ |+..|.++++.|.|..|++||.|.+|+.||++.... .... .+..++ .....|.++.|
T Consensus 163 l~h--gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMda----s~~~--fr~l~P------------~E~h~i~sl~y 222 (641)
T KOG0772|consen 163 LKH--GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDA----SMRS--FRQLQP------------CETHQINSLQY 222 (641)
T ss_pred ccC--CceEEEEeeecCCCceeeeccccceEEEEecccccc----cchh--hhccCc------------ccccccceeee
Confidence 554 899999999999999999999999999999875322 0000 011111 34567899999
Q ss_pred e--CCEEEEEe-CCcEEEEEcCCCcEEEE------------EeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCc
Q 004924 448 R--GSHLFSAS-GGKISIFSLETFQTLAT------------FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK 510 (723)
Q Consensus 448 s--~~~l~s~s-dg~I~vwd~~~~~~~~~------------~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~ 510 (723)
+ |+.|++.+ ....+++|-...+.... .++|...++|.+|+|.. .|++++.||++++||+...+
T Consensus 223 s~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k 302 (641)
T KOG0772|consen 223 SVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK 302 (641)
T ss_pred cCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch
Confidence 9 77666666 88999999764433322 24788899999999998 99999999999999987643
Q ss_pred -EEEEEc-----CcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCE
Q 004924 511 -TKAKLK-----GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 584 (723)
Q Consensus 511 -~~~~l~-----~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~ 584 (723)
....++ +..-+++.++|++||+.++.|+.||.|.+|+..+... .+...+...|.+ ...|+|++||+||++
T Consensus 303 ~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v---~p~~~vk~AH~~-g~~Itsi~FS~dg~~ 378 (641)
T KOG0772|consen 303 SQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV---RPVMKVKDAHLP-GQDITSISFSYDGNY 378 (641)
T ss_pred hheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccc---ccceEeeeccCC-CCceeEEEeccccch
Confidence 233332 3446788999999999999999999999999865322 233334556651 138999999999999
Q ss_pred EEE-EcCCcEEEEECCCC-ceeEEecCCCCCCCeEEEEEeeCCcEEEEEeC------CCcEEEEECCCCcEEEEeecccc
Q 004924 585 LLS-IHEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCK------SGHVKVFDTSTLELRCQINLTAY 656 (723)
Q Consensus 585 l~~-s~dg~I~vwd~~~~-~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~~~ 656 (723)
|++ |.|+++++||++.. +++....+-....+-+.++|||+.++|++|+. .|.+++||..+...+..+...
T Consensus 379 LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-- 456 (641)
T KOG0772|consen 379 LLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-- 456 (641)
T ss_pred hhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC--
Confidence 999 89999999999874 45555444334566789999999999999875 478999999999988887532
Q ss_pred cCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEE-ecCCC
Q 004924 657 AQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI-EPLES 698 (723)
Q Consensus 657 ~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW-d~~~~ 698 (723)
...|..+.||| .-+.|..++.||+++|+ |....
T Consensus 457 --------~aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp~~S 490 (641)
T KOG0772|consen 457 --------TASVVRCLWHP-KLNQIFAGSGDGTAHVYYDPNES 490 (641)
T ss_pred --------CceEEEEeecc-hhhheeeecCCCceEEEECcccc
Confidence 23466999999 77888889999999985 55443
No 56
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=7.7e-30 Score=243.54 Aligned_cols=282 Identities=12% Similarity=0.141 Sum_probs=233.5
Q ss_pred ccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCC--CCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccC
Q 004924 328 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD--NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS 405 (723)
Q Consensus 328 ~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~--~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~ 405 (723)
.....|||||+++++++.||.|.+|+..+++....++ +.-.. ..|.+.|.|+.||.|...||+|+.||.|++|.+.+
T Consensus 216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLk-YQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t 294 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLK-YQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET 294 (508)
T ss_pred hhheeeCCCCceEeeccccceeeeehhccchhhhhhh-hhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec
Confidence 3344599999999999999999999998532111111 10000 23789999999999999999999999999999886
Q ss_pred CcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeE
Q 004924 406 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIAT 482 (723)
Q Consensus 406 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~ 482 (723)
+.+ ++.+. ..|...|+|+.|+ +..+.+++ |.++++.-+++|++++.+++|...|+
T Consensus 295 G~C---------------------lRrFd-rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn 352 (508)
T KOG0275|consen 295 GQC---------------------LRRFD-RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN 352 (508)
T ss_pred chH---------------------HHHhh-hhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcccccc
Confidence 544 22111 1599999999999 78899999 99999999999999999999999999
Q ss_pred EEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcC--cCCcEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeecee
Q 004924 483 YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKF 558 (723)
Q Consensus 483 ~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~--~~~~i~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~ 558 (723)
...|.++| .+++++.||+|++|+..+++++.+|+. ...+|+++..-| +...++++...+++++.++.+ ..
T Consensus 353 ~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG------Qv 426 (508)
T KOG0275|consen 353 EATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG------QV 426 (508)
T ss_pred ceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc------eE
Confidence 99999999 999999999999999999999998865 456788887777 446799999999999999986 33
Q ss_pred eeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcE
Q 004924 559 LHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 637 (723)
Q Consensus 559 l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I 637 (723)
+.++..+.. ..+...+.+.||.|.++++ +.|+.++.|.+.+|+...++.. |...+..++-+|..+.|++-++||.+
T Consensus 427 VrsfsSGkR-EgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V--hEkdvIGl~HHPHqNllAsYsEDgll 503 (508)
T KOG0275|consen 427 VRSFSSGKR-EGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV--HEKDVIGLTHHPHQNLLASYSEDGLL 503 (508)
T ss_pred EeeeccCCc-cCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec--ccccccccccCcccchhhhhcccchh
Confidence 443443322 1156778889999999998 8999999999999999888764 68889999999999999999999999
Q ss_pred EEEE
Q 004924 638 KVFD 641 (723)
Q Consensus 638 ~iwd 641 (723)
++|.
T Consensus 504 KLWk 507 (508)
T KOG0275|consen 504 KLWK 507 (508)
T ss_pred hhcC
Confidence 9995
No 57
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=3.5e-28 Score=237.75 Aligned_cols=273 Identities=15% Similarity=0.176 Sum_probs=222.3
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 450 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 450 (723)
|.+.|.++.-. ++++++|+.||++++|+... +.. .... +|.++|.+++|. +.
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G------k~~----------------~~~~--Ght~~ik~v~~v~~n~ 157 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG------KSI----------------KTIV--GHTGPIKSVAWVIKNS 157 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecCC------ceE----------------EEEe--cCCcceeeeEEEecCC
Confidence 88999999887 78999999999999999652 222 2222 899999999987 33
Q ss_pred ---EEEEEe-CCcEEEEEcCCCcE----EEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCC--------------
Q 004924 451 ---HLFSAS-GGKISIFSLETFQT----LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC-------------- 507 (723)
Q Consensus 451 ---~l~s~s-dg~I~vwd~~~~~~----~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~-------------- 507 (723)
.+++++ |.++++|.++.++. ++...+|...|.+++..++| ++++|+.|..|.+|+..
T Consensus 158 ~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 158 SSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred ccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhh
Confidence 599999 99999999887654 33345999999999999999 99999999999999932
Q ss_pred -----------CCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEE
Q 004924 508 -----------TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 576 (723)
Q Consensus 508 -----------~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l 576 (723)
++.++..+.||..+|.++.|++ ...+++++.|.+|+.||+.++.. ..++..+ ..+.++
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~-----~~~~~~~-----ksl~~i 306 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL-----KSTLTTN-----KSLNCI 306 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccc-----eeeeecC-----cceeEe
Confidence 1235667899999999999998 66899999999999999999743 2323333 679999
Q ss_pred EEccCCCEEEE-EcCCcEEEEECCCCc--e-eEEecCCCCCCCeEEEEEeeCC-cEEEEEeCCCcEEEEECCCCc-EEEE
Q 004924 577 QFHPDQIHLLS-IHEGQIDVYEAPTLN--H-TSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLE-LRCQ 650 (723)
Q Consensus 577 ~~spdg~~l~~-s~dg~I~vwd~~~~~--~-~~~~~~~~h~~~v~~l~~spdg-~~l~sgs~dg~I~iwd~~~~~-~~~~ 650 (723)
..+|....|++ +.|..|++||.+++. . .+++. +|.+.|.++.|+|.. ..+++|+.||++++||+++.+ .+..
T Consensus 307 ~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~--gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plyd 384 (423)
T KOG0313|consen 307 SYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLI--GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYD 384 (423)
T ss_pred ecccccceeeecCCCCceeecCCCCCCCceeEEeee--cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCccee
Confidence 99999999998 599999999998754 2 23343 678999999999965 467899999999999999877 6777
Q ss_pred eecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecC
Q 004924 651 INLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 651 ~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~ 696 (723)
+.. | ... +.++.|+. +..+++||.|++|+|+.-.
T Consensus 385 I~~-------h-~DK--vl~vdW~~--~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 385 IAG-------H-NDK--VLSVDWNE--GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ecc-------C-Cce--EEEEeccC--CceEEeccCcceEEEeccc
Confidence 653 2 333 55999986 6799999999999998753
No 58
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.9e-27 Score=225.23 Aligned_cols=284 Identities=15% Similarity=0.154 Sum_probs=223.1
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 450 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 450 (723)
..+.|.++.|+++|.++++++.|.++++||..++.. ...+. .++-.+..++|. ..
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-----~~ti~------------------skkyG~~~~~Fth~~~ 69 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-----VKTIN------------------SKKYGVDLACFTHHSN 69 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-----eeEee------------------cccccccEEEEecCCc
Confidence 467899999999999999999999999999874322 22221 345567777777 44
Q ss_pred EEE-EEe--CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEE
Q 004924 451 HLF-SAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 526 (723)
Q Consensus 451 ~l~-s~s--dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~ 526 (723)
.++ +.. |.+|+..++.+.+.++.+.||...|.+++.+|-+ .+++++.|++|++||++..++...+..... ..++
T Consensus 70 ~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~A 147 (311)
T KOG1446|consen 70 TVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAA 147 (311)
T ss_pred eEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--ccee
Confidence 444 433 7899999999999999999999999999999999 999999999999999998888776654333 3578
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeee--ecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCce
Q 004924 527 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF--QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH 603 (723)
Q Consensus 527 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~--~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~ 603 (723)
|+|+|-.+|++.....|++||++.... .+..++ ..+.. ...+.+.|||||++|+.+ ..+.+++.|.-+|..
T Consensus 148 fDp~GLifA~~~~~~~IkLyD~Rs~dk---gPF~tf~i~~~~~---~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~ 221 (311)
T KOG1446|consen 148 FDPEGLIFALANGSELIKLYDLRSFDK---GPFTTFSITDNDE---AEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV 221 (311)
T ss_pred ECCCCcEEEEecCCCeEEEEEecccCC---CCceeEccCCCCc---cceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE
Confidence 999999999999888999999997432 223322 21222 688999999999999985 778999999999998
Q ss_pred eEEecCCCCCC-CeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEE
Q 004924 604 TSQLVPDKMDL-PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 682 (723)
Q Consensus 604 ~~~~~~~~h~~-~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la 682 (723)
..++....... .-.+.+|+||++++++|+.||+|.+|++++|..+..+.+. +..++. ++.|+| .-.+++
T Consensus 222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-------~~~~~~--~~~fnP-~~~mf~ 291 (311)
T KOG1446|consen 222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-------NGGPVS--CVRFNP-RYAMFV 291 (311)
T ss_pred eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-------CCCCcc--ccccCC-ceeeee
Confidence 88886543333 2357889999999999999999999999999999988742 233344 888999 444444
Q ss_pred EEECCCcEEEEecCCCc
Q 004924 683 LGLTNGRVHVIEPLESE 699 (723)
Q Consensus 683 s~s~Dg~v~iWd~~~~~ 699 (723)
+.+..+-+|-+...+
T Consensus 292 --sa~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 292 --SASSNLVFWLPDEDA 306 (311)
T ss_pred --ecCceEEEEeccccc
Confidence 456789999886543
No 59
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=2.1e-28 Score=268.95 Aligned_cols=309 Identities=18% Similarity=0.201 Sum_probs=234.5
Q ss_pred ccCCCCCEEEEEe--CCCeEEEEeecccCCCCceeEEecCC-----CCCCCceEEEEEeCCCCEEEEEECCCcEEEEecc
Q 004924 332 TSLPDADSAVCAK--SLEKSVNLKLQLINEPSECRTLLLPD-----NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ 404 (723)
Q Consensus 332 ~~spdg~~la~~s--~dg~v~iw~~~~~~~~~~~~~~~l~~-----~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~ 404 (723)
+.+|||..+|+|+ .|+.++||+.+...+........++. ..|.+.|.|+.|||||+|||+||+|+.|.||+..
T Consensus 20 dv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~ 99 (942)
T KOG0973|consen 20 DVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERA 99 (942)
T ss_pred EecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeec
Confidence 3789999999999 89999999977421111111111111 2399999999999999999999999999999855
Q ss_pred CCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEE
Q 004924 405 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYF 484 (723)
Q Consensus 405 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l 484 (723)
.. ....+..+ + .| .-+++..++...+.+|...|..+
T Consensus 100 ~~----------------------------------~~~~~fgs------~-g~---~~~vE~wk~~~~l~~H~~DV~Dv 135 (942)
T KOG0973|consen 100 EI----------------------------------GSGTVFGS------T-GG---AKNVESWKVVSILRGHDSDVLDV 135 (942)
T ss_pred cc----------------------------------CCcccccc------c-cc---ccccceeeEEEEEecCCCcccee
Confidence 20 00000000 0 00 01234566788899999999999
Q ss_pred EEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeee
Q 004924 485 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 563 (723)
Q Consensus 485 ~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~ 563 (723)
+|+|++ ++++++.|++|.+|+..+.+.+..+++|.+.|..+.|.|-|+++++-+.|++|+||++.+....+. +. -+
T Consensus 136 ~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~--It-~p 212 (942)
T KOG0973|consen 136 NWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKS--IT-KP 212 (942)
T ss_pred ccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEe--ec-cc
Confidence 999999 999999999999999999999999999999999999999999999999999999999776432221 11 01
Q ss_pred cCCCCCCCCeEEEEEccCCCEEEE--EcC---CcEEEEECCCCceeEEecCCCCCCCeEEEEEeeC------C-------
Q 004924 564 TGLVPETTIVNHIQFHPDQIHLLS--IHE---GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD------G------- 625 (723)
Q Consensus 564 ~~~~~~~~~v~~l~~spdg~~l~~--s~d---g~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spd------g------- 625 (723)
..+.+.......+.|||||++|++ +.+ .++.|.+-.+.+.-..+. +|..++.++.|+|. .
T Consensus 213 f~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv--GH~~p~evvrFnP~lfe~~~~ng~~~~~ 290 (942)
T KOG0973|consen 213 FEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV--GHSAPVEVVRFNPKLFERNNKNGTSTQP 290 (942)
T ss_pred hhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee--cCCCceEEEEeChHHhccccccCCccCC
Confidence 112222256789999999999998 322 378898887777666665 57889999999971 1
Q ss_pred c----EEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 626 K----CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 626 ~----~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
. .+|+|+.|++|.||.....+++.....- .+.. +++++|+| ||..|..||.||+|.+..++..+
T Consensus 291 ~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l-------f~~S--I~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 291 NCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL-------FNKS--IVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CcceEEEEEecCCccEEEEecCCCCchhhhhhh-------hcCc--eeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 1 5778999999999999887776554311 1222 55999999 99999999999999999998764
No 60
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=2e-29 Score=248.76 Aligned_cols=279 Identities=16% Similarity=0.191 Sum_probs=232.6
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 450 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 450 (723)
|.+.|..+.|-++...|++|+.|..|++|++..... ..+.++. +..++|+.+.|. +.
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~-------------------~~~~tLa--Gs~g~it~~d~d~~~~ 232 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS-------------------ELISTLA--GSLGNITSIDFDSDNK 232 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchh-------------------hhhhhhh--ccCCCcceeeecCCCc
Confidence 899999999999988899999999999999774332 1111111 567889999999 77
Q ss_pred EEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEc
Q 004924 451 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 528 (723)
Q Consensus 451 ~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~s 528 (723)
++++++ |+.+++|++...+...++.+|.+.|+++.|.... .+++|+.|.+|++||+....+.+++- ..+.+.+|..+
T Consensus 233 ~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~ 311 (459)
T KOG0288|consen 233 HVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS 311 (459)
T ss_pred eEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec
Confidence 777777 9999999999999999999999999999998888 89999999999999999988887764 33456666665
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEe
Q 004924 529 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 607 (723)
Q Consensus 529 pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~ 607 (723)
+..+++|-.|++|++||.+++.. ...++.+ +.|+++..+++|..+++ +.|.++.+.|+++.+....+
T Consensus 312 --~~~~~SgH~DkkvRfwD~Rs~~~-----~~sv~~g-----g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~ 379 (459)
T KOG0288|consen 312 --ISDVISGHFDKKVRFWDIRSADK-----TRSVPLG-----GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTF 379 (459)
T ss_pred --ceeeeecccccceEEEeccCCce-----eeEeecC-----cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEe
Confidence 45788999999999999998643 3323333 78999999999999888 59999999999999988887
Q ss_pred cCCCC--CCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEE
Q 004924 608 VPDKM--DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 685 (723)
Q Consensus 608 ~~~~h--~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 685 (723)
...+. ....+.++|||++.|+++||.||.|+||++.++++...+.... .+ -.+++++|+| .|..+++++
T Consensus 380 sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~-------s~-~aI~s~~W~~-sG~~Llsad 450 (459)
T KOG0288|consen 380 SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST-------SN-AAITSLSWNP-SGSGLLSAD 450 (459)
T ss_pred eccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCC-------CC-cceEEEEEcC-CCchhhccc
Confidence 65432 4558899999999999999999999999999999998887431 22 1255999999 899999999
Q ss_pred CCCcEEEEe
Q 004924 686 TNGRVHVIE 694 (723)
Q Consensus 686 ~Dg~v~iWd 694 (723)
.++.+.+|.
T Consensus 451 k~~~v~lW~ 459 (459)
T KOG0288|consen 451 KQKAVTLWT 459 (459)
T ss_pred CCcceEecC
Confidence 999999994
No 61
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=3.1e-29 Score=252.26 Aligned_cols=290 Identities=12% Similarity=0.150 Sum_probs=235.8
Q ss_pred CcceeeccCCCC-CCceeeeCCCcccccccCC-CCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEE
Q 004924 305 GRPLDASSGDDS-NDSSCFNDNNQSRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIY 382 (723)
Q Consensus 305 ~~~~~~~~~h~~-v~s~~~~~~~~~~~~~~sp-dg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~f 382 (723)
.....+++||.. |.++- ++| .+.++++++.|+.|+||++-. .+.|.+. +.+ |..+|..++|
T Consensus 204 kk~~~~~~gH~kgvsai~-----------~fp~~~hLlLS~gmD~~vklW~vy~---~~~~lrt-f~g--H~k~Vrd~~~ 266 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQ-----------WFPKKGHLLLSGGMDGLVKLWNVYD---DRRCLRT-FKG--HRKPVRDASF 266 (503)
T ss_pred HhheeeccCCccccchhh-----------hccceeeEEEecCCCceEEEEEEec---Ccceehh-hhc--chhhhhhhhc
Confidence 344567778888 44433 555 788999999999999999986 4666655 555 9999999999
Q ss_pred eCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--C-CEEEEEe-CC
Q 004924 383 SHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-SHLFSAS-GG 458 (723)
Q Consensus 383 spdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~-~~l~s~s-dg 458 (723)
+++|..++|+|.|+++++||++++.+ .... .-...++|+.|. + +.+++|+ |+
T Consensus 267 s~~g~~fLS~sfD~~lKlwDtETG~~---------------------~~~f---~~~~~~~cvkf~pd~~n~fl~G~sd~ 322 (503)
T KOG0282|consen 267 NNCGTSFLSASFDRFLKLWDTETGQV---------------------LSRF---HLDKVPTCVKFHPDNQNIFLVGGSDK 322 (503)
T ss_pred cccCCeeeeeecceeeeeeccccceE---------------------EEEE---ecCCCceeeecCCCCCcEEEEecCCC
Confidence 99999999999999999988774332 2222 245667899999 4 6777777 99
Q ss_pred cEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEc-CcCCcEEEEEEcCCCCEEEE
Q 004924 459 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLNVLVS 536 (723)
Q Consensus 459 ~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~-~~~~~i~~l~~spdg~~l~s 536 (723)
.|+-||+++++.++.+..|-+.|..+.|-++| ++++.+.|++++||+.+.+..++... .+.....++..+|++++++.
T Consensus 323 ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~a 402 (503)
T KOG0282|consen 323 KIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAA 402 (503)
T ss_pred cEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehh
Confidence 99999999999999999999999999999999 99999999999999999887765543 24456778999999999999
Q ss_pred EeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecCCCCCCC
Q 004924 537 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLP 615 (723)
Q Consensus 537 ~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~~~ 615 (723)
-+.|..|.++.+...-.. .....+.+|.- .+.-..+.|||||.+|++| .||.+.+||.++-+.+..++. |..+
T Consensus 403 Qs~dN~i~ifs~~~~~r~---nkkK~feGh~v-aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka--h~~~ 476 (503)
T KOG0282|consen 403 QSMDNYIAIFSTVPPFRL---NKKKRFEGHSV-AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA--HDQP 476 (503)
T ss_pred hccCceEEEEeccccccc---CHhhhhcceec-cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc--CCcc
Confidence 999999999987642111 11223445541 1456679999999999996 999999999999998888874 6899
Q ss_pred eEEEEEeeCC-cEEEEEeCCCcEEEEE
Q 004924 616 ITYATYSCDG-KCIYVSCKSGHVKVFD 641 (723)
Q Consensus 616 v~~l~~spdg-~~l~sgs~dg~I~iwd 641 (723)
+..+.|+|.. ..+|+++.||.|++|+
T Consensus 477 ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 477 CIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEEEecCCCcceeEecccCceeEecC
Confidence 9999999965 5789999999999996
No 62
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=1.1e-27 Score=234.24 Aligned_cols=270 Identities=16% Similarity=0.245 Sum_probs=219.3
Q ss_pred CCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCC---CEEEEEECCCcEEEEeccCCccccccc
Q 004924 337 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG---DFLVALTQTATHKLWKWQSNKQSLEEE 413 (723)
Q Consensus 337 g~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg---~~las~s~dg~i~iWd~~~~~~~~g~~ 413 (723)
++.|.+|+.||.+++|+.. +.+... +. ||.++|.+++|.-.. ..++++|.|.++++|.+..+..
T Consensus 115 ~~~IltgsYDg~~riWd~~-----Gk~~~~-~~--Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~----- 181 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLK-----GKSIKT-IV--GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGEN----- 181 (423)
T ss_pred CceEEEeecCCeeEEEecC-----CceEEE-Ee--cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchh-----
Confidence 7889999999999999997 444433 33 499999988886433 3599999999999999764322
Q ss_pred ceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcC------------------------
Q 004924 414 NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE------------------------ 466 (723)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~------------------------ 466 (723)
.........||...|-+++.. |..+++|+ |.++.+|+..
T Consensus 182 --------------~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~ 247 (423)
T KOG0313|consen 182 --------------KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEG 247 (423)
T ss_pred --------------hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcc
Confidence 111111122799999999987 88999999 9999999932
Q ss_pred -CCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 004924 467 -TFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV 545 (723)
Q Consensus 467 -~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~v 545 (723)
++.++-++.+|...|.++.|++.+.+++++.|.+|+.||+.++..+..+.+ ...++|+.++|..++|++|+.|..|++
T Consensus 248 ~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl 326 (423)
T KOG0313|consen 248 GTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRL 326 (423)
T ss_pred cccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceee
Confidence 122455678999999999999855999999999999999999999888874 467999999999999999999999999
Q ss_pred EeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE--EcCCcEEEEECCCCc-eeEEecCCCCCCCeEEEEEe
Q 004924 546 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYS 622 (723)
Q Consensus 546 wd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~--s~dg~I~vwd~~~~~-~~~~~~~~~h~~~v~~l~~s 622 (723)
||.+++. ...+..-..+|. ..|.++.|+|...++++ +.|+++++||+++.+ ++..+. +|...|.++.|.
T Consensus 327 ~DPR~~~---gs~v~~s~~gH~---nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~--~h~DKvl~vdW~ 398 (423)
T KOG0313|consen 327 WDPRTGD---GSVVSQSLIGHK---NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA--GHNDKVLSVDWN 398 (423)
T ss_pred cCCCCCC---CceeEEeeecch---hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec--cCCceEEEEecc
Confidence 9999863 233333456787 79999999999876665 599999999999877 777775 579999999996
Q ss_pred eCCcEEEEEeCCCcEEEEECC
Q 004924 623 CDGKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 623 pdg~~l~sgs~dg~I~iwd~~ 643 (723)
++.++++|+.|++|+|+...
T Consensus 399 -~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 399 -EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred -CCceEEeccCcceEEEeccc
Confidence 67789999999999998754
No 63
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.2e-27 Score=244.87 Aligned_cols=268 Identities=16% Similarity=0.217 Sum_probs=229.0
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccc
Q 004924 331 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 410 (723)
Q Consensus 331 ~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~ 410 (723)
..+.|...++.++-..|.|.||+.++ ....+.+.. ..-+|.+..|-+--+++++|++|..|+||+..+.+.
T Consensus 19 Vd~HPtePw~la~LynG~V~IWnyet---qtmVksfeV----~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek-- 89 (794)
T KOG0276|consen 19 VDFHPTEPWILAALYNGDVQIWNYET---QTMVKSFEV----SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK-- 89 (794)
T ss_pred eecCCCCceEEEeeecCeeEEEeccc---ceeeeeeee----cccchhhheeeeccceEEEecCCceEEEEeccccee--
Confidence 44778888999999999999999985 333444432 467999999999999999999999999999875332
Q ss_pred cccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCC-CcEEEEEeCCCCCeEEEEE
Q 004924 411 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFIL 486 (723)
Q Consensus 411 g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~-~~~~~~~~~~~~~v~~l~~ 486 (723)
+..+ . .|.+.|.|++.+ ..++++++ |-+|++||.+. ..+.+++.+|..-|.+++|
T Consensus 90 ---V~~F-----e-------------AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~f 148 (794)
T KOG0276|consen 90 ---VKTF-----E-------------AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAF 148 (794)
T ss_pred ---eEEe-----e-------------ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEe
Confidence 2222 1 799999999999 78999999 89999999975 4788999999999999999
Q ss_pred cCCC--eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCceeeceeeeee
Q 004924 487 LPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL--NVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 562 (723)
Q Consensus 487 ~p~~--~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg--~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~ 562 (723)
+|.+ .+|+++-|++|++|.+.+..+..++++|...|+|+.+-+.| .+|++|+.|.+|+|||..+ ..+++ .
T Consensus 149 nPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt-----k~CV~-T 222 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT-----KSCVQ-T 222 (794)
T ss_pred cCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch-----HHHHH-H
Confidence 9988 99999999999999999999999999999999999998754 6899999999999999998 35566 5
Q ss_pred ecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEE
Q 004924 563 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV 639 (723)
Q Consensus 563 ~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~i 639 (723)
..||. ..|..+.|+|.-..+++ +.||+++||+..+-+...++... ...+++++-.+.++.++.|..+|.|.+
T Consensus 223 LeGHt---~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 223 LEGHT---NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred hhccc---ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEEEeccCCcEEE
Confidence 56787 79999999999999999 59999999999888877776542 678999999888888898888776643
No 64
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=1.3e-28 Score=227.81 Aligned_cols=287 Identities=14% Similarity=0.157 Sum_probs=236.2
Q ss_pred eccCCCC-CCceeeeCCCcccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCE
Q 004924 310 ASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDF 388 (723)
Q Consensus 310 ~~~~h~~-v~s~~~~~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~ 388 (723)
+..||+. |.-+.|++ ..|+|-+|++++.|+.=.+-+-+ ++.-.-. +.+ |.+.||......+...
T Consensus 9 ~c~ghtrpvvdl~~s~--------itp~g~flisa~kd~~pmlr~g~----tgdwigt-feg--hkgavw~~~l~~na~~ 73 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSP--------ITPDGYFLISASKDGKPMLRNGD----TGDWIGT-FEG--HKGAVWSATLNKNATR 73 (334)
T ss_pred EEcCCCcceeEEeccC--------CCCCceEEEEeccCCCchhccCC----CCCcEEe-eec--cCcceeeeecCchhhh
Confidence 4467887 66666655 57999999999999987666554 2333322 555 9999999999999999
Q ss_pred EEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEc
Q 004924 389 LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSL 465 (723)
Q Consensus 389 las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~ 465 (723)
.|+++.|-+.+|||.-+ |....++ .|..-|.+++|+ .++|++|+ +..++|||+
T Consensus 74 aasaaadftakvw~a~t-----gdelhsf-------------------~hkhivk~~af~~ds~~lltgg~ekllrvfdl 129 (334)
T KOG0278|consen 74 AASAAADFTAKVWDAVT-----GDELHSF-------------------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL 129 (334)
T ss_pred hhhhcccchhhhhhhhh-----hhhhhhh-------------------hhhheeeeEEecccchhhhccchHHHhhhhhc
Confidence 99999999999988653 3333333 488999999999 78899999 999999999
Q ss_pred CCC-cEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcE
Q 004924 466 ETF-QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL 543 (723)
Q Consensus 466 ~~~-~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I 543 (723)
+.. .....+.+|.+.|..+.|+... .|++++.|++|++||.++|+.++.+. ...+|+++.++++|+++.++ ..+.|
T Consensus 130 n~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV 207 (334)
T KOG0278|consen 130 NRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSV 207 (334)
T ss_pred cCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCcee
Confidence 764 4567788999999999999888 88888999999999999999999987 56789999999999876554 56789
Q ss_pred EEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEe
Q 004924 544 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 622 (723)
Q Consensus 544 ~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~s 622 (723)
.+||.++...++...+. ..|.+.+++|+...+++ +.|..++.||..+++.+..+. .+|.++|.++.|+
T Consensus 208 ~Fwdaksf~~lKs~k~P----------~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n-kgh~gpVhcVrFS 276 (334)
T KOG0278|consen 208 KFWDAKSFGLLKSYKMP----------CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN-KGHFGPVHCVRFS 276 (334)
T ss_pred EEeccccccceeeccCc----------cccccccccCCCceEEecCcceEEEEEeccCCceeeecc-cCCCCceEEEEEC
Confidence 99999985443332222 57899999999877777 599999999999999988862 3689999999999
Q ss_pred eCCcEEEEEeCCCcEEEEECCCCcEE
Q 004924 623 CDGKCIYVSCKSGHVKVFDTSTLELR 648 (723)
Q Consensus 623 pdg~~l~sgs~dg~I~iwd~~~~~~~ 648 (723)
|||...++||+||+|++|....++..
T Consensus 277 PdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 277 PDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCCceeeccCCCceEEEEEecCCCch
Confidence 99999999999999999998877643
No 65
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.3e-27 Score=223.44 Aligned_cols=287 Identities=15% Similarity=0.188 Sum_probs=226.3
Q ss_pred CCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--C
Q 004924 372 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 449 (723)
Q Consensus 372 ~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~ 449 (723)
||..+++.+.|+.+|..|.+|+.|.++.||-..+ |..+ -++. +|.++|+|+..+ .
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n-----Gerl----------------Gty~--GHtGavW~~Did~~s 64 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN-----GERL----------------GTYD--GHTGAVWCCDIDWDS 64 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecC-----Ccee----------------eeec--CCCceEEEEEecCCc
Confidence 4999999999999999999999999999997542 2222 2222 899999999998 8
Q ss_pred CEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEEC-----CCcEEEEeCC-------CCcEEEEE
Q 004924 450 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-----DSSILVHCPC-------TKKTKAKL 515 (723)
Q Consensus 450 ~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~-----dg~I~iwd~~-------~~~~~~~l 515 (723)
+.+++|+ |.++++||+++|+++..+.. ..+|..+.|+++| +++.... .+.|.++|++ ..++...+
T Consensus 65 ~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI 143 (327)
T KOG0643|consen 65 KHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI 143 (327)
T ss_pred ceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe
Confidence 8999999 99999999999999998864 5678999999999 5555443 3579999988 45667888
Q ss_pred cCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEE
Q 004924 516 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQID 594 (723)
Q Consensus 516 ~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~ 594 (723)
..+.+.++.+.|.|-++.|++|..||.|..||+++|.. .+. -...|. ..|+.+.++||..++++ +.|.+-+
T Consensus 144 ~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~----~v~-s~~~h~---~~Ind~q~s~d~T~FiT~s~Dttak 215 (327)
T KOG0643|consen 144 PTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE----LVD-SDEEHS---SKINDLQFSRDRTYFITGSKDTTAK 215 (327)
T ss_pred cCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce----eee-chhhhc---cccccccccCCcceEEecccCccce
Confidence 88899999999999999999999999999999999732 122 233455 68999999999999999 5999999
Q ss_pred EEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCc--EEEEECCCCcEEEEeecc----cc-cCCCCccCccc
Q 004924 595 VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH--VKVFDTSTLELRCQINLT----AY-AQPGTISLELY 667 (723)
Q Consensus 595 vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~--I~iwd~~~~~~~~~~~~~----~~-~~~g~~~~~v~ 667 (723)
+||..+.++++++.. ..+|++.+++|...+++.|+.... |.--+.+.|+...++-.. .+ ...| |-++++
T Consensus 216 l~D~~tl~v~Kty~t---e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkG-HFGPIN 291 (327)
T KOG0643|consen 216 LVDVRTLEVLKTYTT---ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKG-HFGPIN 291 (327)
T ss_pred eeeccceeeEEEeee---cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccc-cccCcc
Confidence 999999999999975 789999999998888777654322 222222333322221100 00 0113 466777
Q ss_pred eEEEEEecCCCCEEEEEECCCcEEEEecCC
Q 004924 668 PLVIAAHPLEPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 668 ~~~v~~sp~d~~~las~s~Dg~v~iWd~~~ 697 (723)
+++||| +|+..++|+.||.||+.-...
T Consensus 292 --svAfhP-dGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 292 --SVAFHP-DGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred --eeEECC-CCcccccCCCCceEEEEEecc
Confidence 999999 899999999999999986644
No 66
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=3.8e-27 Score=245.88 Aligned_cols=348 Identities=14% Similarity=0.169 Sum_probs=266.6
Q ss_pred ccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCC-----------CCEEEEEECCC
Q 004924 328 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS-----------GDFLVALTQTA 396 (723)
Q Consensus 328 ~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspd-----------g~~las~s~dg 396 (723)
.++..|.|....+...-.|..+.|||+.+.+..+++..... |...||.+.--|. ...+.||+.|+
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~ly----HS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~ 402 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLY----HSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDG 402 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeee----ccceeeeeccccccccCcccccCCccceeEecCCC
Confidence 44555888889999999999999999998766777766532 9999999887661 12489999999
Q ss_pred cEEEEeccCCccccccc------ceeeeeEEEecCCCeeeeecc----------CCCCCCCeEEEEEe--CCEEEEEe-C
Q 004924 397 THKLWKWQSNKQSLEEE------NVNMESQLYQPSSKLVMTNDI----------AADPKDSISCFALR--GSHLFSAS-G 457 (723)
Q Consensus 397 ~i~iWd~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~----------~~~h~~~V~~v~~s--~~~l~s~s-d 457 (723)
+||+|++..... +.. .......+|.-.+...+.... .-+....+.+++.+ |++||+|. .
T Consensus 403 TIRlW~l~~ctn--n~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~ 480 (1080)
T KOG1408|consen 403 TIRLWDLAFCTN--NQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG 480 (1080)
T ss_pred cEEEeecccccc--cceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCcc
Confidence 999999886221 111 000000112111111111000 00245678999999 99999999 8
Q ss_pred CcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC----eEEEEECCCcEEEEeCCC-CcEEEEEcCcCCcEEEEEEcCCC-
Q 004924 458 GKISIFSLETFQTLATFANPPPIATYFILLPQD----LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLSL- 531 (723)
Q Consensus 458 g~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~----~l~sgs~dg~I~iwd~~~-~~~~~~l~~~~~~i~~l~~spdg- 531 (723)
|+++||++..-+....+..|...|.|+.++... +||+++.|..|.|||+.. ..+++++.+|...|+++.|..+|
T Consensus 481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gl 560 (1080)
T KOG1408|consen 481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGL 560 (1080)
T ss_pred CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCC
Confidence 999999999988888999999999999998643 899999999999999864 45678899999999999998877
Q ss_pred -CEEEEEeCCCcEEEEeCCCCceeeceeeeeeecC-CCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEec
Q 004924 532 -NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG-LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLV 608 (723)
Q Consensus 532 -~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~-~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~ 608 (723)
..+++++.|+.|.+ +.... .....+ ++.+ |.-....+..++..|..+++++ +.|..|+|||+.+|+..+.|+
T Consensus 561 n~~MiscGADksimF-r~~qk--~~~g~~--f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FK 635 (1080)
T KOG1408|consen 561 NRKMISCGADKSIMF-RVNQK--ASSGRL--FPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFK 635 (1080)
T ss_pred ceEEEeccCchhhhe-ehhcc--ccCcee--ccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeec
Confidence 67999999998754 33220 000011 1111 1111157899999999999998 799999999999999999998
Q ss_pred CC-CCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECC
Q 004924 609 PD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 687 (723)
Q Consensus 609 ~~-~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D 687 (723)
+. .|.+....+...|.|.||++.+.|.++.++|..+|+++....+ | +.- ++.+.|.+ |-++|++++.|
T Consensus 636 gs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~G-------H-sE~--VTG~kF~n-DCkHlISvsgD 704 (1080)
T KOG1408|consen 636 GSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTG-------H-SEA--VTGVKFLN-DCKHLISVSGD 704 (1080)
T ss_pred ccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcC-------c-chh--eeeeeecc-cchhheeecCC
Confidence 74 3567888999999999999999999999999999999998873 3 333 55999999 88999999999
Q ss_pred CcEEEEecCC
Q 004924 688 GRVHVIEPLE 697 (723)
Q Consensus 688 g~v~iWd~~~ 697 (723)
|.|.||.+..
T Consensus 705 gCIFvW~lp~ 714 (1080)
T KOG1408|consen 705 GCIFVWKLPL 714 (1080)
T ss_pred ceEEEEECch
Confidence 9999999864
No 67
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2.3e-26 Score=242.13 Aligned_cols=304 Identities=14% Similarity=0.148 Sum_probs=247.4
Q ss_pred eCCCeEEEEeecccC-C---CCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeee
Q 004924 344 KSLEKSVNLKLQLIN-E---PSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMES 419 (723)
Q Consensus 344 s~dg~v~iw~~~~~~-~---~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~ 419 (723)
-.++++..|.++... . +.....+.++| |...|.++++|.|...++||+ .+.+++|+..+.+
T Consensus 341 l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~G--HR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~k------------ 405 (888)
T KOG0306|consen 341 LANNTVEWYSLENSGKTSPEADRTSNIEIGG--HRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLK------------ 405 (888)
T ss_pred eecCceEEEEeccCCCCCccccccceeeecc--chhheeEEEeecCceeeeecC-CCcEEEEEccCcc------------
Confidence 567888888887511 1 12233345555 999999999999998777665 4688898876433
Q ss_pred EEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEE
Q 004924 420 QLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG 495 (723)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sg 495 (723)
++.+. ....+.+..|. +.++++|. .|.+.+||+.+...+.++++|.+.+++++.+||+ .+++|
T Consensus 406 ---------ciRTi----~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~ 472 (888)
T KOG0306|consen 406 ---------CIRTI----TCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTG 472 (888)
T ss_pred ---------eeEEe----ccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEe
Confidence 33332 23367777787 77888998 8999999999999999999999999999999999 99999
Q ss_pred ECCCcEEEEeCCC-----CcEEEEEc-------CcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeee
Q 004924 496 FDDSSILVHCPCT-----KKTKAKLK-------GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 563 (723)
Q Consensus 496 s~dg~I~iwd~~~-----~~~~~~l~-------~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~ 563 (723)
|.|.+|++||..- |...+.+. .-...|.|+.+||||++|+++--|.+++||-+++- .+.--.
T Consensus 473 saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl------KFflsL 546 (888)
T KOG0306|consen 473 SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL------KFFLSL 546 (888)
T ss_pred cCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce------eeeeee
Confidence 9999999999531 22211111 13568999999999999999999999999999883 122124
Q ss_pred cCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEEC
Q 004924 564 TGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 642 (723)
Q Consensus 564 ~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~ 642 (723)
-||. -+|.|+..|||++.+++ +.|.+|++|-+.-|.|.+.+. +|...|.++.|-|+...+.+++.|+.|+-||-
T Consensus 547 YGHk---LPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f--AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg 621 (888)
T KOG0306|consen 547 YGHK---LPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF--AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDG 621 (888)
T ss_pred cccc---cceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh--cccCceeEEEEcccceeEEEecCcceEEeech
Confidence 4676 79999999999999999 599999999999999988886 57999999999999999999999999999999
Q ss_pred CCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCC
Q 004924 643 STLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 643 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~ 697 (723)
..-+.+..+. ||+ ..++ |++.+| +|.+++++|.|.+|++|.-..
T Consensus 622 ~kFe~iq~L~-------~H~-~ev~--cLav~~-~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 622 EKFEEIQKLD-------GHH-SEVW--CLAVSP-NGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred hhhhhheeec-------cch-heee--eeEEcC-CCCeEEeccCCceeEeeeccC
Confidence 9999998887 443 3577 999999 899999999999999998754
No 68
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-26 Score=243.68 Aligned_cols=271 Identities=18% Similarity=0.213 Sum_probs=225.0
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCccccc
Q 004924 332 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 411 (723)
Q Consensus 332 ~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g 411 (723)
+++ ....+|+|. ...|.+|+... +....+ ... +.+.|+++.|+++|++||.|..+|.|.|||......
T Consensus 184 dWs-s~n~laVal-g~~vylW~~~s----~~v~~l-~~~--~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~--- 251 (484)
T KOG0305|consen 184 DWS-SANVLAVAL-GQSVYLWSASS----GSVTEL-CSF--GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK--- 251 (484)
T ss_pred hcc-cCCeEEEEe-cceEEEEecCC----CceEEe-Eec--CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc---
Confidence 366 344555554 66899999874 444333 221 478999999999999999999999999999764322
Q ss_pred ccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcCCCcEEEE-EeCCCCCeEEEEEcCC
Q 004924 412 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYFILLPQ 489 (723)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~I~vwd~~~~~~~~~-~~~~~~~v~~l~~~p~ 489 (723)
+.... ++|...|.+++|++..+.+|+ ++.|..+|+...+.... +.+|...|..+.|++|
T Consensus 252 ------------------~~~~~-~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d 312 (484)
T KOG0305|consen 252 ------------------TRTLR-GSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPD 312 (484)
T ss_pred ------------------ccccc-CCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCC
Confidence 11111 138999999999988999999 99999999988766555 7899999999999999
Q ss_pred C-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcC-CCCEEEEEe--CCCcEEEEeCCCCceeeceeeeeeecC
Q 004924 490 D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTG 565 (723)
Q Consensus 490 ~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~sp-dg~~l~s~s--~dg~I~vwd~~~~~~~~~~~l~~~~~~ 565 (723)
+ ++|+|+.|+.+.|||....++...+..|...|..++|+| ....||+|+ .|++|++||+.+|. .+..+..+
T Consensus 313 ~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~-----~i~~vdtg 387 (484)
T KOG0305|consen 313 GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA-----RIDSVDTG 387 (484)
T ss_pred CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc-----EecccccC
Confidence 9 999999999999999988889999999999999999999 456788865 69999999999864 34434444
Q ss_pred CCCCCCCeEEEEEccCCCEEEE--E-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEEC
Q 004924 566 LVPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 642 (723)
Q Consensus 566 ~~~~~~~v~~l~~spdg~~l~~--s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~ 642 (723)
..|.++.|++..+.|++ | .++.|.||+..+.+.+..+. +|...|..+++||||..+++|+.|.++++|++
T Consensus 388 -----sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~--gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 388 -----SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL--GHTSRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred -----CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec--CCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 78999999999988887 4 67899999999988888876 57999999999999999999999999999998
Q ss_pred CCC
Q 004924 643 STL 645 (723)
Q Consensus 643 ~~~ 645 (723)
-..
T Consensus 461 f~~ 463 (484)
T KOG0305|consen 461 FDE 463 (484)
T ss_pred cCC
Confidence 764
No 69
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.8e-26 Score=251.87 Aligned_cols=270 Identities=20% Similarity=0.219 Sum_probs=228.9
Q ss_pred CCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCccccccccee
Q 004924 337 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVN 416 (723)
Q Consensus 337 g~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~ 416 (723)
+..+++++.+.++++|+..+ +......+.| |.+.|++++|..-+.+|++|+.|.++++||..++
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~----~~~i~~~l~G--H~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg---------- 281 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNN----GYLILTRLVG--HFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG---------- 281 (537)
T ss_pred cCeEEecCCCceeEEeeccc----ceEEEeeccC--CCCCceeEEEecCCCEEEEEecCCcEEeEecCCC----------
Confidence 56789999999999999984 5555554665 9999999999987889999999999999986643
Q ss_pred eeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEE
Q 004924 417 MESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAF 494 (723)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~s 494 (723)
.+...+. +|.+.|.++...+..+++|+ |.+|++|++.++.++..+.+|..+|.++..+ + .+++
T Consensus 282 -----------~C~~~l~--gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvs 346 (537)
T KOG0274|consen 282 -----------ECTHSLQ--GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVS 346 (537)
T ss_pred -----------cEEEEec--CCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEE
Confidence 3333333 79999999988888888989 9999999999999999999999999999997 5 9999
Q ss_pred EECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeE
Q 004924 495 GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN 574 (723)
Q Consensus 495 gs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~ 574 (723)
|+.|++|++||+.++++++.+.+|...|.++.+.+. ..+++|+.|++|++||+.+.. +++. ...+|. .-+.
T Consensus 347 gs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~----~c~~-tl~~h~---~~v~ 417 (537)
T KOG0274|consen 347 GSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR----KCIH-TLQGHT---SLVS 417 (537)
T ss_pred EecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh----hhhh-hhcCCc---cccc
Confidence 999999999999999999999999999999988765 899999999999999999842 3455 344554 4454
Q ss_pred EEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEe
Q 004924 575 HIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 651 (723)
Q Consensus 575 ~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~ 651 (723)
.+. ..++.+++ +.|++|++||..++++++++... |...|..+++. ...+++++.||.+++||++++++...+
T Consensus 418 ~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 418 SLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 443 44678888 59999999999999999999764 56788888876 567889999999999999999988766
No 70
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.9e-26 Score=250.17 Aligned_cols=276 Identities=17% Similarity=0.198 Sum_probs=230.9
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeee-ccCCCCCCCeEEEEEe--C
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN-DIAADPKDSISCFALR--G 449 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~V~~v~~s--~ 449 (723)
|...+.+..|. +.++++++.|++|++|+...+ ..+.. +. +|.+.|+++++. +
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~---------------------~~i~~~l~--GH~g~V~~l~~~~~~ 261 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG---------------------YLILTRLV--GHFGGVWGLAFPSGG 261 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccc---------------------eEEEeecc--CCCCCceeEEEecCC
Confidence 67888999998 556899999999999886532 22222 22 799999999999 8
Q ss_pred CEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEc
Q 004924 450 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 528 (723)
Q Consensus 450 ~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~s 528 (723)
.++++|+ |.++++||..+|++...+.+|...+.++...+. .+++|+.|.+|++|++.++..+..+.+|.++|+++..+
T Consensus 262 ~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~-~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~ 340 (537)
T KOG0274|consen 262 DKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF-LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD 340 (537)
T ss_pred CEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc-eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec
Confidence 9999999 999999999999999999999999998876543 78889999999999999999999999999999999998
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCC-ceeEE
Q 004924 529 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-NHTSQ 606 (723)
Q Consensus 529 pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~-~~~~~ 606 (723)
+.++++|+.|++|++||+.++ +++. ...+|. ..|.++.+.+. ..+++ +.|+.|++||++++ +++.+
T Consensus 341 --~~~lvsgs~d~~v~VW~~~~~-----~cl~-sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 341 --EPLLVSGSYDGTVKVWDPRTG-----KCLK-SLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred --CCEEEEEecCceEEEEEhhhc-----eeee-eecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh
Confidence 789999999999999999985 4455 344577 89999988876 67776 69999999999999 88888
Q ss_pred ecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEEC
Q 004924 607 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 686 (723)
Q Consensus 607 ~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~ 686 (723)
+.. |..-+..+. ..+++|++++.||+|++||..+++++..+..+ +...+. ++++. ...+++++.
T Consensus 409 l~~--h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-------~~~~v~--~l~~~---~~~il~s~~ 472 (537)
T KOG0274|consen 409 LQG--HTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-------HVGGVS--ALALG---KEEILCSSD 472 (537)
T ss_pred hcC--Ccccccccc--cccceeEeccccccEEEeecccCceeeeeccC-------CcccEE--EeecC---cceEEEEec
Confidence 864 566665444 46889999999999999999999999998742 223344 56543 357899999
Q ss_pred CCcEEEEecCCCceee
Q 004924 687 NGRVHVIEPLESEVEW 702 (723)
Q Consensus 687 Dg~v~iWd~~~~~~~w 702 (723)
||++++||+.+++..-
T Consensus 473 ~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 473 DGSVKLWDLRSGTLIR 488 (537)
T ss_pred CCeeEEEecccCchhh
Confidence 9999999999987653
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.3e-26 Score=234.06 Aligned_cols=280 Identities=19% Similarity=0.254 Sum_probs=227.3
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 450 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 450 (723)
..+.|.+++|||...+=.+....-.+.||+..+.. ..+++. .....|.++.|. |.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~---------------------~~k~~s--rFk~~v~s~~fR~DG~ 81 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRS---------------------VRKTFS--RFKDVVYSVDFRSDGR 81 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhh---------------------hhhhHH--hhccceeEEEeecCCe
Confidence 35789999999976543333334577777755321 111111 367889999999 77
Q ss_pred EEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEE
Q 004924 451 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 527 (723)
Q Consensus 451 ~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~ 527 (723)
++++|+ .|.|+|||+++...++.+.+|..++..+.|+|++ .+++|+.|+.+++||+.+......+.+|+..|.|.+|
T Consensus 82 LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~ 161 (487)
T KOG0310|consen 82 LLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDI 161 (487)
T ss_pred EEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeecc
Confidence 888888 7999999988877788899999999999999988 8899999999999999998877789999999999999
Q ss_pred cCC-CCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEE
Q 004924 528 SLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQ 606 (723)
Q Consensus 528 spd-g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~ 606 (723)
+|- +..+++|+.||.|++||++... ..+.++ .|. .+|.++.+-|.|..|+++....++|||+.+|.....
T Consensus 162 ~~~~~hivvtGsYDg~vrl~DtR~~~----~~v~el--nhg---~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~ 232 (487)
T KOG0310|consen 162 SPANDHIVVTGSYDGKVRLWDTRSLT----SRVVEL--NHG---CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLT 232 (487)
T ss_pred ccCCCeEEEecCCCceEEEEEeccCC----ceeEEe--cCC---CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehh
Confidence 995 4589999999999999999832 223323 344 689999999999999999889999999986655433
Q ss_pred ecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEEC
Q 004924 607 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 686 (723)
Q Consensus 607 ~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~ 686 (723)
... .|...|+|+++..++..|++|+-|+.+++||+.+.+.+..+..+ ++ +++++.+| ++..++.|..
T Consensus 233 ~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~---------~p--vLsiavs~-dd~t~viGms 299 (487)
T KOG0310|consen 233 SMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP---------GP--VLSIAVSP-DDQTVVIGMS 299 (487)
T ss_pred hhh-cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc---------cc--eeeEEecC-CCceEEEecc
Confidence 333 37999999999999999999999999999999999999888652 23 55999999 8899999999
Q ss_pred CCcEEEEecCC
Q 004924 687 NGRVHVIEPLE 697 (723)
Q Consensus 687 Dg~v~iWd~~~ 697 (723)
||.+-+=+...
T Consensus 300 nGlv~~rr~~~ 310 (487)
T KOG0310|consen 300 NGLVSIRRREV 310 (487)
T ss_pred cceeeeehhhc
Confidence 99888775443
No 72
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.8e-25 Score=243.93 Aligned_cols=294 Identities=13% Similarity=0.100 Sum_probs=215.9
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeee-ccCCCCCCCeEEEEEe---
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN-DIAADPKDSISCFALR--- 448 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~V~~v~~s--- 448 (723)
|-..|.....++|+..+++++.+..+..|+...+.. .++....|..... ....+|.+.|.+++|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~-----------v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d 87 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTA-----------VLKHTDYGKLASNPPILLGQEGPIIDVAFNPFD 87 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceE-----------EeeccccccCCCCCceEeCCCCCEEEEEEcCCC
Confidence 456777778888987789999999889998653211 1233333332210 0112799999999998
Q ss_pred CCEEEEEe-CCcEEEEEcCCC-------cEEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEEEEEcCc
Q 004924 449 GSHLFSAS-GGKISIFSLETF-------QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGH 518 (723)
Q Consensus 449 ~~~l~s~s-dg~I~vwd~~~~-------~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~~l~~~ 518 (723)
+++|++|+ |++|++||+.++ ..+..+.+|...|.+++|+|++ .|++|+.|++|++||+.+++.+..+.+|
T Consensus 88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h 167 (493)
T PTZ00421 88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH 167 (493)
T ss_pred CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence 57899999 999999999765 3567788999999999999986 8999999999999999999999999999
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E----cCCcE
Q 004924 519 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I----HEGQI 593 (723)
Q Consensus 519 ~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s----~dg~I 593 (723)
...|.+++|+|+|..|++++.|++|++||++++.. +.++ .+|.. ..+..+.|.+++..+++ + .|+.|
T Consensus 168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-----v~tl-~~H~~--~~~~~~~w~~~~~~ivt~G~s~s~Dr~V 239 (493)
T PTZ00421 168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-----VSSV-EAHAS--AKSQRCLWAKRKDLIITLGCSKSQQRQI 239 (493)
T ss_pred CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-----EEEE-ecCCC--CcceEEEEcCCCCeEEEEecCCCCCCeE
Confidence 99999999999999999999999999999998643 3322 34431 33557789998877776 4 36899
Q ss_pred EEEECCCCc-eeEEecCCCCCCCeEEEEEeeCCcEEEEEe-CCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEE
Q 004924 594 DVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 671 (723)
Q Consensus 594 ~vwd~~~~~-~~~~~~~~~h~~~v~~l~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v 671 (723)
++||+++.. +...... .+...+....|++++++|++|+ .||.|++||+.+++........ +..... .+
T Consensus 240 klWDlr~~~~p~~~~~~-d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-------s~~~~~--g~ 309 (493)
T PTZ00421 240 MLWDTRKMASPYSTVDL-DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-------SVEPHK--GL 309 (493)
T ss_pred EEEeCCCCCCceeEecc-CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-------CCCCCc--ce
Confidence 999998754 3333322 2345566678999999999887 5999999999999877654321 123344 77
Q ss_pred EEecCCCCEEEEEECCCcEEEEecCCC
Q 004924 672 AAHPLEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 672 ~~sp~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
+|.| .. -+=...--..|+|.+...
T Consensus 310 ~~~p-k~--~~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 310 CMMP-KW--SLDTRKCEIARFYALTYH 333 (493)
T ss_pred Eecc-cc--cccccceeeeEEEEecCC
Confidence 7877 21 121122224466666543
No 73
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.7e-27 Score=251.28 Aligned_cols=241 Identities=14% Similarity=0.175 Sum_probs=201.2
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCC--------------------------------C-------------
Q 004924 437 DPKDSISCFALR--GSHLFSAS-GGKISIFSLET--------------------------------F------------- 468 (723)
Q Consensus 437 ~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~--------------------------------~------------- 468 (723)
.|.++|+++.|+ |+|||+|| ||.|+||.+.. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 599999999999 99999999 99999998754 0
Q ss_pred ---------------cEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcC-CCC
Q 004924 469 ---------------QTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLN 532 (723)
Q Consensus 469 ---------------~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~sp-dg~ 532 (723)
++++.+.+|.+.|..+.|+.+++|++++.|.+|++|++...++++.|. |...|+|++|+| |.+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDR 423 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCC
Confidence 012345689999999999999999999999999999999999999998 999999999999 789
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecCCC
Q 004924 533 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK 611 (723)
Q Consensus 533 ~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~ 611 (723)
++++|+-||.+|||++...+.... ..-+ .-|++++|.|||++.++| .+|.+++|++...+....+....
T Consensus 424 yFiSGSLD~KvRiWsI~d~~Vv~W------~Dl~----~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDKKVVDW------NDLR----DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred cEeecccccceEEeecCcCeeEee------hhhh----hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 999999999999999988543333 2333 689999999999999985 99999999998877766554322
Q ss_pred C------CCCeEEEEEeeCC-cEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEE
Q 004924 612 M------DLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 684 (723)
Q Consensus 612 h------~~~v~~l~~spdg-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 684 (723)
| ...|+.+.|.|.. ..|++.+.|..|+|+|.+...++..+.+... . -.-+...|+. ||++|+++
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n-------~-~SQ~~Asfs~-Dgk~IVs~ 564 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN-------T-SSQISASFSS-DGKHIVSA 564 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc-------C-CcceeeeEcc-CCCEEEEe
Confidence 2 3379999999744 4688888999999999999999888875322 1 1134788999 99999999
Q ss_pred ECCCcEEEEecCC
Q 004924 685 LTNGRVHVIEPLE 697 (723)
Q Consensus 685 s~Dg~v~iWd~~~ 697 (723)
++|..|+||+...
T Consensus 565 seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 565 SEDSWVYIWKNDS 577 (712)
T ss_pred ecCceEEEEeCCC
Confidence 9999999999743
No 74
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.5e-27 Score=217.35 Aligned_cols=237 Identities=15% Similarity=0.190 Sum_probs=195.0
Q ss_pred CCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCC-CcEEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCc
Q 004924 438 PKDSISCFALR---GSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK 510 (723)
Q Consensus 438 h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~~-~~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~ 510 (723)
-.+.+..++|+ .+.+++++ ||++++||... ..++..++.|...|.++.|++.. .++++|.|++|++|+...++
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 56788999999 56666666 99999999643 45788889999999999999977 88889999999999999999
Q ss_pred EEEEEcCcCCcEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEE-E-
Q 004924 511 TKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL-S- 587 (723)
Q Consensus 511 ~~~~l~~~~~~i~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~-~- 587 (723)
.+.++.||...|...+|+| .++.+++++.|+++++||++.. .+.+. ...|. .+|.++.|+.-...++ +
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~----gk~~~--i~ah~---~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP----GKFMS--IEAHN---SEILCCDWSKYNHNVLATG 209 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC----CceeE--EEecc---ceeEeecccccCCcEEEec
Confidence 9999999999999999999 5689999999999999999873 22333 33454 6899999998765554 5
Q ss_pred EcCCcEEEEECCCCc-eeEEecCCCCCCCeEEEEEeeCC-cEEEEEeCCCcEEEEECCCCc-EEEEeecccccCCCCccC
Q 004924 588 IHEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLE-LRCQINLTAYAQPGTISL 664 (723)
Q Consensus 588 s~dg~I~vwd~~~~~-~~~~~~~~~h~~~v~~l~~spdg-~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~~~~~~g~~~~ 664 (723)
+.|+.|++||+++.+ ++..+ .+|.-.|..+.|||.. ..|++++.|-+++|||...+. .+.+.. ||..
T Consensus 210 ~vd~~vr~wDir~~r~pl~eL--~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~--------~HtE 279 (311)
T KOG0277|consen 210 GVDNLVRGWDIRNLRTPLFEL--NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD--------HHTE 279 (311)
T ss_pred CCCceEEEEehhhccccceee--cCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh--------ccce
Confidence 499999999998755 44445 3679999999999965 688899999999999998554 333332 2333
Q ss_pred ccceEEEEEecCCCCEEEEEECCCcEEEEec
Q 004924 665 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 695 (723)
Q Consensus 665 ~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~ 695 (723)
.+..+.|++.++.++|+++.|+.++||++
T Consensus 280 --Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 280 --FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred --EEeccccccccCceeeecccccceeeecc
Confidence 34599999988999999999999999996
No 75
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.1e-26 Score=215.97 Aligned_cols=240 Identities=20% Similarity=0.231 Sum_probs=204.4
Q ss_pred cCCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC---eEEEEECCCcEEEEeCCCC
Q 004924 434 IAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTK 509 (723)
Q Consensus 434 ~~~~h~~~V~~v~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~---~l~sgs~dg~I~iwd~~~~ 509 (723)
....|.+++++++.++.++|+|+ |.+|+|||+.+...+..+..|.+.|+++.|.++- .|++|+.||.|.+|+....
T Consensus 38 ~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 38 AFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred cccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe
Confidence 33479999999999999999999 9999999999999999999999999999998876 8999999999999999999
Q ss_pred cEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEc
Q 004924 510 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH 589 (723)
Q Consensus 510 ~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~ 589 (723)
.++..+++|.+.|+.++.+|.|+..++.+.|+.++.||+-.|..-...++. .....+.|+|.|.+++.+.
T Consensus 118 ~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~----------~~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 118 ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK----------NKATLVSWSPQGDHFVVSG 187 (362)
T ss_pred EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC----------CcceeeEEcCCCCEEEEEe
Confidence 999999999999999999999999999999999999999887543322232 2345699999999999988
Q ss_pred CCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceE
Q 004924 590 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPL 669 (723)
Q Consensus 590 dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 669 (723)
...|-+|.+.+......+.. ...+.++.|. ++.+|++|+.|+.|.+||..+..+...+..| ...|-
T Consensus 188 ~~~i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH--------~~RVK-- 253 (362)
T KOG0294|consen 188 RNKIDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAH--------ENRVK-- 253 (362)
T ss_pred ccEEEEEecccHhHhhhhhc---cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecc--------hhhee--
Confidence 88999999988776665532 3446666664 6778999999999999999998888888753 44455
Q ss_pred EEE--EecCCCCEEEEEECCCcEEEEecCCC
Q 004924 670 VIA--AHPLEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 670 ~v~--~sp~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
++. -+| ++.+|+|+|.||.|+|||+...
T Consensus 254 ~i~~~~~~-~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 254 DIASYTNP-EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeEEEecC-CceEEEEeccCceEEEEEcccc
Confidence 555 345 6789999999999999999765
No 76
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=1.7e-25 Score=238.48 Aligned_cols=334 Identities=16% Similarity=0.179 Sum_probs=258.3
Q ss_pred ccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCC-CceEEEEEeCCCCE-EEEEECCCcEEEEeccCCc
Q 004924 330 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFG-GRVVRLIYSHSGDF-LVALTQTATHKLWKWQSNK 407 (723)
Q Consensus 330 ~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~-~~V~~l~fspdg~~-las~s~dg~i~iWd~~~~~ 407 (723)
..+++|--..+|.|..+|+|.|+++.. ...+..++ |. +.|+.++|..||.. +|+|+..|.+.+||++...
T Consensus 207 ~ieqsPaLDVVaiG~~~G~ViifNlK~---dkil~sFk-----~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kk 278 (910)
T KOG1539|consen 207 AIEQSPALDVVAIGLENGTVIIFNLKF---DKILMSFK-----QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKK 278 (910)
T ss_pred EeccCCcceEEEEeccCceEEEEEccc---CcEEEEEE-----ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCe
Confidence 345888888999999999999999986 45555554 64 89999999999975 5556667999999998765
Q ss_pred c-------ccccc-----------------ceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCc
Q 004924 408 Q-------SLEEE-----------------NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGK 459 (723)
Q Consensus 408 ~-------~~g~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~ 459 (723)
. ..|.. ..+...-++|...|........+||..+..|++|. |..+.+++ |++
T Consensus 279 l~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt 358 (910)
T KOG1539|consen 279 LINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRT 358 (910)
T ss_pred eeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcc
Confidence 5 10110 01111233443333222222344899999999988 67788888 887
Q ss_pred EEEEEcCC-------Cc--------EE---------------------------------------------------EE
Q 004924 460 ISIFSLET-------FQ--------TL---------------------------------------------------AT 473 (723)
Q Consensus 460 I~vwd~~~-------~~--------~~---------------------------------------------------~~ 473 (723)
.+.+++.. ++ .+ ..
T Consensus 359 ~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~ 438 (910)
T KOG1539|consen 359 LRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHV 438 (910)
T ss_pred hhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEE
Confidence 77776521 00 00 00
Q ss_pred Ee-----CCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEE---cCcCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 004924 474 FA-----NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL---KGHQNRITCLAYSLSLNVLVSSGADAQLC 544 (723)
Q Consensus 474 ~~-----~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l---~~~~~~i~~l~~spdg~~l~s~s~dg~I~ 544 (723)
+. .....+++++.++.| ..+.|+..|+|-+|++.+|-....+ ..|.++|+.++...-++.+++++.+|.++
T Consensus 439 L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilk 518 (910)
T KOG1539|consen 439 LDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILK 518 (910)
T ss_pred ecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEE
Confidence 00 122567899999999 8999999999999999999888888 47999999999999999999999999999
Q ss_pred EEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEee
Q 004924 545 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 623 (723)
Q Consensus 545 vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~sp 623 (723)
+||.+.... +.++.-+ ..+.++..+.....++. +.|-.|+++|..+.+.++.+. +|...|++++|||
T Consensus 519 fw~f~~k~l-----~~~l~l~-----~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~--gh~nritd~~FS~ 586 (910)
T KOG1539|consen 519 FWDFKKKVL-----KKSLRLG-----SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW--GHGNRITDMTFSP 586 (910)
T ss_pred EEecCCcce-----eeeeccC-----CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh--ccccceeeeEeCC
Confidence 999998532 3333333 56888999888888887 588899999999999999887 4799999999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECC-CcEEEEec
Q 004924 624 DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-GRVHVIEP 695 (723)
Q Consensus 624 dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D-g~v~iWd~ 695 (723)
||++|++++.|++|++||+.++.++-.+.. +. .++++.|+| +|++|||+..| ..|++|.=
T Consensus 587 DgrWlisasmD~tIr~wDlpt~~lID~~~v---------d~--~~~sls~SP-ngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 587 DGRWLISASMDSTIRTWDLPTGTLIDGLLV---------DS--PCTSLSFSP-NGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred CCcEEEEeecCCcEEEEeccCcceeeeEec---------CC--cceeeEECC-CCCEEEEEEecCceEEEEEc
Confidence 999999999999999999999999887753 22 255999999 89999999988 78999963
No 77
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.1e-26 Score=229.54 Aligned_cols=275 Identities=15% Similarity=0.127 Sum_probs=221.3
Q ss_pred ccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCccc
Q 004924 330 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 409 (723)
Q Consensus 330 ~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~ 409 (723)
...|.++...+++++.|..|++|++...+ ..... .|.| ..++|+.+.|.++++++++++.|+.+++|++....
T Consensus 180 ~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k--~~~~~-tLaG--s~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r-- 252 (459)
T KOG0288|consen 180 DVEFLRNSDTLATGGSDRIIKLWNVLGEK--SELIS-TLAG--SLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR-- 252 (459)
T ss_pred eeEEccCcchhhhcchhhhhhhhhcccch--hhhhh-hhhc--cCCCcceeeecCCCceEEeecCCCceeeeeccchh--
Confidence 34478888899999999999999998521 11222 2444 67899999999999999999999999999977422
Q ss_pred ccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCE-EEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEE
Q 004924 410 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH-LFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 486 (723)
Q Consensus 410 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~-l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~ 486 (723)
++.++. +|++.|+++.|. +.. +++|+ |.+|+.||+....|.+++-. ...+..++.
T Consensus 253 -------------------~~~TLs--GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~ 310 (459)
T KOG0288|consen 253 -------------------LRHTLS--GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVC 310 (459)
T ss_pred -------------------hhhhhc--ccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEe
Confidence 222222 799999999999 544 89999 99999999999888877642 223444444
Q ss_pred cCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecC
Q 004924 487 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 565 (723)
Q Consensus 487 ~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~ 565 (723)
+ + .+++|-.|+.|++||++++.+......+. .|+++..+++|..+.+++.|.++.+.|+++.+......-..+..+
T Consensus 311 ~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~a 387 (459)
T KOG0288|consen 311 S--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCA 387 (459)
T ss_pred c--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccc
Confidence 4 4 78999999999999999999999988765 899999999999999999999999999998543222111112233
Q ss_pred CCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEE
Q 004924 566 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 641 (723)
Q Consensus 566 ~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd 641 (723)
...+.+.|||++.|+++ +.||.|+||++.++++...+........|++++|+|.|..|++++.++.+.+|.
T Consensus 388 -----sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 388 -----SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred -----cccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 45889999999999999 599999999999999988887643344799999999999999999999999993
No 78
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=1.4e-25 Score=209.96 Aligned_cols=269 Identities=16% Similarity=0.176 Sum_probs=212.8
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccc
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 412 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~ 412 (723)
+..+|.+|.+++.|.+..+|-..+ ...+-. +. ||++.|||+..+-+.+++++|+.|.++++||+.++++
T Consensus 18 yN~eGDLlFscaKD~~~~vw~s~n---GerlGt--y~--GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~---- 86 (327)
T KOG0643|consen 18 YNREGDLLFSCAKDSTPTVWYSLN---GERLGT--YD--GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ---- 86 (327)
T ss_pred ecCCCcEEEEecCCCCceEEEecC---Cceeee--ec--CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE----
Confidence 667899999999999999998764 233333 33 5999999999999999999999999999999885433
Q ss_pred cceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEeC------CcEEEEEcC-------CCcEEEEEeCC
Q 004924 413 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASG------GKISIFSLE-------TFQTLATFANP 477 (723)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~sd------g~I~vwd~~-------~~~~~~~~~~~ 477 (723)
... |+ ...+|..+.|+ |++++.+.| +.|.++|++ ..++...+..+
T Consensus 87 -la~-----~k--------------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~ 146 (327)
T KOG0643|consen 87 -LAT-----WK--------------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP 146 (327)
T ss_pred -EEE-----ee--------------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC
Confidence 322 22 56789999999 666655554 569999987 44567788888
Q ss_pred CCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCc-EEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 004924 478 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK-TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 555 (723)
Q Consensus 478 ~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~-~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~ 555 (723)
...++.+-|.|-+ .|++|..||.|.+||+++|+ .+..-+.|...|+++.+++|..++++++.|.+-++||+.+-+
T Consensus 147 ~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~--- 223 (327)
T KOG0643|consen 147 DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLE--- 223 (327)
T ss_pred ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeecccee---
Confidence 8999999999999 99999999999999999985 445557799999999999999999999999999999999843
Q ss_pred ceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE--cC-CcEEEEECCCCc------------eeEEecCCCCCCCeEEEE
Q 004924 556 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQIDVYEAPTLN------------HTSQLVPDKMDLPITYAT 620 (723)
Q Consensus 556 ~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s--~d-g~I~vwd~~~~~------------~~~~~~~~~h~~~v~~l~ 620 (723)
.+++.... .+|++.+++|....++.+ .+ ..|.-=+.+.|+ .+..++ +|-++|++++
T Consensus 224 --v~Kty~te-----~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk--GHFGPINsvA 294 (327)
T KOG0643|consen 224 --VLKTYTTE-----RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK--GHFGPINSVA 294 (327)
T ss_pred --eEEEeeec-----ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccc--ccccCcceeE
Confidence 33333322 689999999987777653 22 233333333332 233333 5799999999
Q ss_pred EeeCCcEEEEEeCCCcEEEEECCC
Q 004924 621 YSCDGKCIYVSCKSGHVKVFDTST 644 (723)
Q Consensus 621 ~spdg~~l~sgs~dg~I~iwd~~~ 644 (723)
|+|+|+..++|++||.|++.....
T Consensus 295 fhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 295 FHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ECCCCcccccCCCCceEEEEEecc
Confidence 999999999999999999986654
No 79
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=4.7e-25 Score=240.60 Aligned_cols=267 Identities=11% Similarity=0.073 Sum_probs=199.7
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccC------CCCceeE--EecCCCCCCCceEEEEEeC-CCCEEEEEECCCcEEEEec
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLIN------EPSECRT--LLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKW 403 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~------~~~~~~~--~~l~~~~h~~~V~~l~fsp-dg~~las~s~dg~i~iWd~ 403 (723)
.++|+..+++++.+.....|+..++. ..+.... ..+. +|.+.|++++|+| ++.+|++|+.|++|++||+
T Consensus 28 ~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~--GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi 105 (493)
T PTZ00421 28 ALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILL--GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGI 105 (493)
T ss_pred ccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEe--CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEec
Confidence 56676767777777777777654310 0111110 0122 5999999999999 8899999999999999998
Q ss_pred cCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCC
Q 004924 404 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPP 479 (723)
Q Consensus 404 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~ 479 (723)
..... .. .....+..+ .+|...|.+++|+ +++|++++ |++|++||+.+++....+.+|..
T Consensus 106 ~~~~~-----~~---------~~~~~l~~L--~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~ 169 (493)
T PTZ00421 106 PEEGL-----TQ---------NISDPIVHL--QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD 169 (493)
T ss_pred CCCcc-----cc---------ccCcceEEe--cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC
Confidence 74321 00 000111111 1799999999999 36899999 99999999999999999999999
Q ss_pred CeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCc-EEEEEEcCCCCEEEEEe----CCCcEEEEeCCCCce
Q 004924 480 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR-ITCLAYSLSLNVLVSSG----ADAQLCVWDAVGWKK 553 (723)
Q Consensus 480 ~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~-i~~l~~spdg~~l~s~s----~dg~I~vwd~~~~~~ 553 (723)
.|.+++|+|+| .|++|+.|+.|++||+++++.+..+.+|.+. +..+.|.+++..+++++ .|+.|++||+++..
T Consensus 170 ~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~- 248 (493)
T PTZ00421 170 QITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA- 248 (493)
T ss_pred ceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC-
Confidence 99999999999 9999999999999999999999999988765 45678999888877654 47899999998742
Q ss_pred eeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCC
Q 004924 554 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG 625 (723)
Q Consensus 554 ~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg 625 (723)
.++........ ..+....|++++.++++ + .|+.|++||+.+++.+..... .+..++..++|.|.-
T Consensus 249 ---~p~~~~~~d~~---~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~-~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 249 ---SPYSTVDLDQS---SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY-SSVEPHKGLCMMPKW 315 (493)
T ss_pred ---CceeEeccCCC---CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec-cCCCCCcceEecccc
Confidence 22221111222 45667789999998887 4 599999999999987766543 245677888888853
No 80
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=4.6e-27 Score=228.45 Aligned_cols=279 Identities=11% Similarity=0.130 Sum_probs=218.3
Q ss_pred CCCCceEEEEEeCCC-CEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-C
Q 004924 372 SFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G 449 (723)
Q Consensus 372 ~h~~~V~~l~fspdg-~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~ 449 (723)
||.+.|.|++=+|.. ..++||+.||.|+|||+....+ ...+. .|.+.|..+++. +
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~---------------------~~~f~--AH~G~V~Gi~v~~~ 120 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC---------------------IRTFK--AHEGLVRGICVTQT 120 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehhhhhh---------------------hheee--cccCceeeEEeccc
Confidence 499999999999987 7799999999999999875333 11111 699999999999 5
Q ss_pred CEEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEc
Q 004924 450 SHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 528 (723)
Q Consensus 450 ~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~s 528 (723)
..+.+|.|.+|+.|.+.- ...+++.+ ...+..+.-+..+ .+++|+. .|.|||..-..++..+.-....|.++.|+
T Consensus 121 ~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfN 196 (433)
T KOG0268|consen 121 SFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFN 196 (433)
T ss_pred ceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecC
Confidence 444444499999999864 46666654 3345566666666 8888875 59999998888999998888889999999
Q ss_pred CCC-CEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCc-eeE
Q 004924 529 LSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN-HTS 605 (723)
Q Consensus 529 pdg-~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~-~~~ 605 (723)
|-. ..|++|+.|+.|.+||++.+..+....+. ..-+.++|+|.+-.+++ ..|..++.||++... ++.
T Consensus 197 pvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~----------mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~ 266 (433)
T KOG0268|consen 197 PVETSILASCASDRSIVLYDLRQASPLKKVILT----------MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLN 266 (433)
T ss_pred CCcchheeeeccCCceEEEecccCCccceeeee----------ccccceecCccccceeeccccccceehhhhhhcccch
Confidence 965 56778889999999999997554433222 45668999997766666 489999999998754 444
Q ss_pred EecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEE
Q 004924 606 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 685 (723)
Q Consensus 606 ~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 685 (723)
.+. +|.+.|.++.|||.|+-+++||.|.+|+||....+.....+-. ..--.+.|+.||- |.+++++||
T Consensus 267 v~~--dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht---------kRMq~V~~Vk~S~-Dskyi~SGS 334 (433)
T KOG0268|consen 267 VHK--DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT---------KRMQHVFCVKYSM-DSKYIISGS 334 (433)
T ss_pred hhc--ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH---------hhhheeeEEEEec-cccEEEecC
Confidence 444 5799999999999999999999999999999998765444321 1112266999999 899999999
Q ss_pred CCCcEEEEecCCCc
Q 004924 686 TNGRVHVIEPLESE 699 (723)
Q Consensus 686 ~Dg~v~iWd~~~~~ 699 (723)
+|+.|++|.....+
T Consensus 335 dd~nvRlWka~Ase 348 (433)
T KOG0268|consen 335 DDGNVRLWKAKASE 348 (433)
T ss_pred CCcceeeeecchhh
Confidence 99999999987655
No 81
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=5e-26 Score=230.17 Aligned_cols=308 Identities=18% Similarity=0.188 Sum_probs=225.5
Q ss_pred CCCcceeeccCCCCCCceeeeCCCcccccccCCCCCEEEEEeCCCeEEEEeecccCCC-CceeEEecCCCCCCCceEEEE
Q 004924 303 QEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEP-SECRTLLLPDNSFGGRVVRLI 381 (723)
Q Consensus 303 ~~~~~~~~~~~h~~v~s~~~~~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~-~~~~~~~l~~~~h~~~V~~l~ 381 (723)
+++..--.+.+|+.+.+++- +-|.|..+++|+.|.+|+.||+.+.... ..++++ .|. ....|.+++
T Consensus 155 IP~shEi~l~hgtk~Vsal~----------~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l-~P~--E~h~i~sl~ 221 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALA----------VDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQL-QPC--ETHQINSLQ 221 (641)
T ss_pred CCccceEeccCCceEEEEee----------ecCCCceeeeccccceEEEEecccccccchhhhcc-Ccc--cccccceee
Confidence 33444445567777655443 4567899999999999999999864211 123333 343 567899999
Q ss_pred EeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeee-ccCCCCCCCeEEEEEe---CCEEEEEe-
Q 004924 382 YSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN-DIAADPKDSISCFALR---GSHLFSAS- 456 (723)
Q Consensus 382 fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~V~~v~~s---~~~l~s~s- 456 (723)
||+.|..|++.+....++|+|-..... ..+. ...+.+.. ....||...++|.+|+ .+.+++++
T Consensus 222 ys~Tg~~iLvvsg~aqakl~DRdG~~~------~e~~------KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~ 289 (641)
T KOG0772|consen 222 YSVTGDQILVVSGSAQAKLLDRDGFEI------VEFS------KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY 289 (641)
T ss_pred ecCCCCeEEEEecCcceeEEccCCcee------eeee------ccchhhhhhhccCCceeeeeccccccCcccceEEecC
Confidence 999999999999989999999664322 2211 11111111 1112899999999999 55678888
Q ss_pred CCcEEEEEcCCCc-EEEEEe-----CCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCc--EE-EEEcCcCC--cEEE
Q 004924 457 GGKISIFSLETFQ-TLATFA-----NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK--TK-AKLKGHQN--RITC 524 (723)
Q Consensus 457 dg~I~vwd~~~~~-~~~~~~-----~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~--~~-~~l~~~~~--~i~~ 524 (723)
||++++||+...+ ..+.+. +..-.+++++|+++| .||+|+.||.|.+|+..+.. +. ..-..|.. .|+|
T Consensus 290 DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Its 369 (641)
T KOG0772|consen 290 DGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITS 369 (641)
T ss_pred CCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeE
Confidence 9999999997643 333332 233467999999999 99999999999999975432 22 22345766 8999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-------cCCcEEEEE
Q 004924 525 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-------HEGQIDVYE 597 (723)
Q Consensus 525 l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-------~dg~I~vwd 597 (723)
++|++||++|++-+.|+++++||++... +++.....-.+. .+-+.++|||+.+.|++| ..|.+.+||
T Consensus 370 i~FS~dg~~LlSRg~D~tLKvWDLrq~k----kpL~~~tgL~t~--~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 370 ISFSYDGNYLLSRGFDDTLKVWDLRQFK----KPLNVRTGLPTP--FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred EEeccccchhhhccCCCceeeeeccccc----cchhhhcCCCcc--CCCCccccCCCceEEEecccccCCCCCceEEEEe
Confidence 9999999999999999999999999842 334321111111 456789999999999984 235799999
Q ss_pred CCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECC
Q 004924 598 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 598 ~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~ 643 (723)
..+...++.+... ...|..+.|+|.-+.|.+|+.||.++||=-.
T Consensus 444 ~~t~d~v~ki~i~--~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 444 RMTLDTVYKIDIS--TASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred ccceeeEEEecCC--CceEEEEeecchhhheeeecCCCceEEEECc
Confidence 9999988888653 7889999999999999999999999987543
No 82
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.1e-26 Score=211.43 Aligned_cols=260 Identities=15% Similarity=0.213 Sum_probs=208.1
Q ss_pred CCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCC-CCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEec
Q 004924 346 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQP 424 (723)
Q Consensus 346 dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspd-g~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~ 424 (723)
.|++.|-++.....-.++..+. -.+.+..++||++ ...+++++.||++++||...... . +..|.
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~d-----~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~----P-----i~~~k- 101 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSYD-----TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK----P-----IHKFK- 101 (311)
T ss_pred CceEEEEecCCCCCeEEEEeee-----cccceeEeeecCCCcceEEEEecCceEEEeccCCCCc----c-----hhHHH-
Confidence 5778888886432233444443 5789999999986 46788999999999999542111 1 11122
Q ss_pred CCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC--eEEEEECC
Q 004924 425 SSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDD 498 (723)
Q Consensus 425 ~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~d 498 (723)
.|...|.++.|+ +..+++++ |++|++|+...++.+.++.+|...|...+|+|.. .++++|.|
T Consensus 102 ------------EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd 169 (311)
T KOG0277|consen 102 ------------EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGD 169 (311)
T ss_pred ------------hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCC
Confidence 699999999999 66777888 9999999999999999999999999999999987 99999999
Q ss_pred CcEEEEeCCCCcEEEEEcCcCCcEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEE
Q 004924 499 SSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 577 (723)
Q Consensus 499 g~I~iwd~~~~~~~~~l~~~~~~i~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~ 577 (723)
+++++||++..-....+..|...|.|+.|+. +.+.+++|+.|+.|+.||++.- ..++..+ .+|. -.|..+.
T Consensus 170 ~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~----r~pl~eL-~gh~---~AVRkvk 241 (311)
T KOG0277|consen 170 GTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL----RTPLFEL-NGHG---LAVRKVK 241 (311)
T ss_pred ceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhc----cccceee-cCCc---eEEEEEe
Confidence 9999999987433444888999999999998 6678999999999999999983 2445534 5666 7999999
Q ss_pred EccCCCE-EEE-EcCCcEEEEECCCCce-eEEecCCCCCCCeEEEEEee-CCcEEEEEeCCCcEEEEEC
Q 004924 578 FHPDQIH-LLS-IHEGQIDVYEAPTLNH-TSQLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDT 642 (723)
Q Consensus 578 ~spdg~~-l~~-s~dg~I~vwd~~~~~~-~~~~~~~~h~~~v~~l~~sp-dg~~l~sgs~dg~I~iwd~ 642 (723)
|||...- |++ +.|-++++||...+.. +.++. .|...+..+.||+ ++.++|+.+.|+.++||+.
T Consensus 242 ~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~--~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 242 FSPHHASLLASASYDMTVRIWDPERQDSAIETVD--HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cCcchhhHhhhccccceEEecccccchhhhhhhh--ccceEEeccccccccCceeeecccccceeeecc
Confidence 9998754 455 5899999999985543 33333 5788999999997 6779999999999999984
No 83
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=209.69 Aligned_cols=246 Identities=15% Similarity=0.185 Sum_probs=210.7
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEE--EeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCC
Q 004924 437 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT--FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK 509 (723)
Q Consensus 437 ~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~--~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~ 509 (723)
+|...|.+++|+ |..|++|+ |+++.+|+++..+.... ..+|.+.|-.++|+|.. .+++++.|.+|++||++++
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~ 97 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG 97 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence 689999999999 99999999 99999999987755544 35889899999999987 9999999999999999999
Q ss_pred cEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E
Q 004924 510 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I 588 (723)
Q Consensus 510 ~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s 588 (723)
++........+.| .+.|+|+|.+++.++.|..|...|.++.......... ..+..++|+.++.++.. .
T Consensus 98 k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~----------~e~ne~~w~~~nd~Fflt~ 166 (313)
T KOG1407|consen 98 KCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK----------FEVNEISWNNSNDLFFLTN 166 (313)
T ss_pred cEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhccc----------ceeeeeeecCCCCEEEEec
Confidence 9998887554444 5689999999999999999999999984332222222 56778899877777665 5
Q ss_pred cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccce
Q 004924 589 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYP 668 (723)
Q Consensus 589 ~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~ 668 (723)
..|+|.|......++++.+. .|.....++.|+|+|+|+|+|+.|..+.+||+..--++..+... +-+|.
T Consensus 167 GlG~v~ILsypsLkpv~si~--AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl--------dwpVR- 235 (313)
T KOG1407|consen 167 GLGCVEILSYPSLKPVQSIK--AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL--------DWPVR- 235 (313)
T ss_pred CCceEEEEeccccccccccc--cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc--------cCceE-
Confidence 77999999999999999887 47899999999999999999999999999999987777776532 55666
Q ss_pred EEEEEecCCCCEEEEEECCCcEEEEecCCCceeeecCC
Q 004924 669 LVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLP 706 (723)
Q Consensus 669 ~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~w~~~~ 706 (723)
.+.|+. +|++||+||+|..|-|=++++|.+.|.++-
T Consensus 236 -TlSFS~-dg~~lASaSEDh~IDIA~vetGd~~~eI~~ 271 (313)
T KOG1407|consen 236 -TLSFSH-DGRMLASASEDHFIDIAEVETGDRVWEIPC 271 (313)
T ss_pred -EEEecc-CcceeeccCccceEEeEecccCCeEEEeec
Confidence 999999 999999999999999999999999998865
No 84
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.8e-24 Score=195.20 Aligned_cols=303 Identities=14% Similarity=0.133 Sum_probs=222.2
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCccc-ccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--C
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS-LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 449 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~ 449 (723)
.+..|.+++|.|.|...|.|+...+.+|-.......+ .++......+.+. + + ...+|.+.|.|.+|+ |
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~------~-k--r~khhkgsiyc~~ws~~g 101 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVL------C-K--RNKHHKGSIYCTAWSPCG 101 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEE------e-e--eccccCccEEEEEecCcc
Confidence 4778999999999999999999999998765432221 1111111111110 1 1 112699999999999 9
Q ss_pred CEEEEEe-CCcEEEEEcCCCcE-----EEEEeCCCCCeEEEEEcCC---C--eEEEEE-CCCcEEEEeCCCCcEEEEEcC
Q 004924 450 SHLFSAS-GGKISIFSLETFQT-----LATFANPPPIATYFILLPQ---D--LFAFGF-DDSSILVHCPCTKKTKAKLKG 517 (723)
Q Consensus 450 ~~l~s~s-dg~I~vwd~~~~~~-----~~~~~~~~~~v~~l~~~p~---~--~l~sgs-~dg~I~iwd~~~~~~~~~l~~ 517 (723)
+++++|+ |.+|++.-.+...+ -..+..|.+.|..++|-.+ + .+++++ .|..|++-|..+|+..+.+.|
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg 181 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG 181 (350)
T ss_pred CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC
Confidence 9999999 99999976643322 2356789999999999643 2 556554 577888889999999999999
Q ss_pred cCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEE
Q 004924 518 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVY 596 (723)
Q Consensus 518 ~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vw 596 (723)
|.+-|.++ ++-+|-++++|+.|.+|++||++-...+. .+.+-..+..-....|.+++..|.|+.++++ .|....+|
T Consensus 182 htghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~--~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly 258 (350)
T KOG0641|consen 182 HTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVN--TLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY 258 (350)
T ss_pred CcccEEEE-EEecCcEEEccCCCceEEEEeeeccceee--eccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence 99999876 44467899999999999999998743322 1211111110112679999999999999997 88899999
Q ss_pred ECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecC
Q 004924 597 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 676 (723)
Q Consensus 597 d~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~ 676 (723)
|++.++.++.+.+ |...|.++.|||...|+++++.|..|++-|+.. .+.+.+... +. +-|.. .++.+.|+|
T Consensus 259 dirg~r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlqg-dla~el~~~--vv-~ehkd--k~i~~rwh~- 329 (350)
T KOG0641|consen 259 DIRGGRMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG-DLAHELPIM--VV-AEHKD--KAIQCRWHP- 329 (350)
T ss_pred EeeCCceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeeccc-chhhcCceE--EE-EeccC--ceEEEEecC-
Confidence 9999999999974 799999999999999999999999999999874 222222110 00 11222 245899999
Q ss_pred CCCEEEEEECCCcEEEEecC
Q 004924 677 EPNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 677 d~~~las~s~Dg~v~iWd~~ 696 (723)
..--+++.+.|.++.+|-+.
T Consensus 330 ~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 330 QDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccceeeeccCcceEEEeccC
Confidence 45668888999999999764
No 85
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=8.2e-26 Score=215.21 Aligned_cols=289 Identities=11% Similarity=0.168 Sum_probs=225.6
Q ss_pred CcccccccCCCCCEEEEEeCCCeEEEEeeccc-------------CCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEE
Q 004924 326 NQSRESTSLPDADSAVCAKSLEKSVNLKLQLI-------------NEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVAL 392 (723)
Q Consensus 326 ~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~-------------~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~ 392 (723)
...+...|+|||.++|+|+.|-.|+|.|++.. ...+....-+|-. |.++|+++.|+|....|++|
T Consensus 113 ~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD--H~devn~l~FHPre~ILiS~ 190 (430)
T KOG0640|consen 113 SPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD--HVDEVNDLDFHPRETILISG 190 (430)
T ss_pred cceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh--ccCcccceeecchhheEEec
Confidence 34455679999999999999999999998721 1111122222444 99999999999999999999
Q ss_pred ECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCc
Q 004924 393 TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ 469 (723)
Q Consensus 393 s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~ 469 (723)
+.|++|+++|+..... + .. .+. + ....+|.++.|+ |++++.|. ..++++||+.+.+
T Consensus 191 srD~tvKlFDfsK~sa---K--rA-------------~K~-~--qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q 249 (430)
T KOG0640|consen 191 SRDNTVKLFDFSKTSA---K--RA-------------FKV-F--QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ 249 (430)
T ss_pred cCCCeEEEEecccHHH---H--HH-------------HHH-h--hccceeeeEeecCCCceEEEecCCCceeEEecccee
Confidence 9999999999763211 0 00 000 0 245789999999 99999999 5799999999998
Q ss_pred EEEEEe---CCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcC-cC-CcEEEEEEcCCCCEEEEEeCCCcE
Q 004924 470 TLATFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQ-NRITCLAYSLSLNVLVSSGADAQL 543 (723)
Q Consensus 470 ~~~~~~---~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~-~~-~~i~~l~~spdg~~l~s~s~dg~I 543 (723)
+...-. +|.+.|+++.+++.+ ..++|+.||.|++||--+++++.++.. |. ..|.+..|..+|+++++.+.|..+
T Consensus 250 cfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~v 329 (430)
T KOG0640|consen 250 CFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTV 329 (430)
T ss_pred EeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCccee
Confidence 876543 788999999999999 999999999999999888999988854 54 578899999999999999999999
Q ss_pred EEEeCCCCceeeceeeeeeecC-CCCCCCCeEEEEEccCCCEEEEE--cCCcEEEEECCCCceeEEecCCCCCCCeEEEE
Q 004924 544 CVWDAVGWKKLCSKFLHSFQTG-LVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYAT 620 (723)
Q Consensus 544 ~vwd~~~~~~~~~~~l~~~~~~-~~~~~~~v~~l~~spdg~~l~~s--~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~ 620 (723)
++|.+.+|.. +...... .+....--+...|+....+++.- ..+.+.-||.+++..+..+.. +|.+.+..+.
T Consensus 330 kLWEi~t~R~-----l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~ 403 (430)
T KOG0640|consen 330 KLWEISTGRM-----LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIV 403 (430)
T ss_pred eeeeecCCce-----EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEE
Confidence 9999999754 3322211 11000122345677777787773 567899999999887665544 7899999999
Q ss_pred EeeCCcEEEEEeCCCcEEEEECC
Q 004924 621 YSCDGKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 621 ~spdg~~l~sgs~dg~I~iwd~~ 643 (723)
-||.+.-+++++.|-.+++|-.+
T Consensus 404 HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 404 HSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred eCCCCCceeeecccceeeeeeec
Confidence 99999999999999999999654
No 86
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.5e-24 Score=207.15 Aligned_cols=249 Identities=16% Similarity=0.186 Sum_probs=205.7
Q ss_pred CCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEEC--CCcEEEEeCCCCcE
Q 004924 438 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD--DSSILVHCPCTKKT 511 (723)
Q Consensus 438 h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~--dg~I~iwd~~~~~~ 511 (723)
....|.++.|+ |.++++++ |.++++||..++++.+++..+...+..++|.... .++.++. |.+|+..++.+.+.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 46789999999 88999988 8899999999999999999888888888887666 6666665 88999999999999
Q ss_pred EEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEc-C
Q 004924 512 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH-E 590 (723)
Q Consensus 512 ~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~-d 590 (723)
++.|.||...|+.+..+|-+..+++++.|++|++||++..++ ...+.. ..-..++|.|.|-++|++. .
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c-----qg~l~~------~~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC-----QGLLNL------SGRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC-----ceEEec------CCCcceeECCCCcEEEEecCC
Confidence 999999999999999999999999999999999999997332 111111 2233689999999999864 3
Q ss_pred CcEEEEECCCC--ceeEEecCC-CCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccc
Q 004924 591 GQIDVYEAPTL--NHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELY 667 (723)
Q Consensus 591 g~I~vwd~~~~--~~~~~~~~~-~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~ 667 (723)
+.|++||++.- .+..++... ......+.+.|||||++|+.++..+.+++.|.-+|.....+..+.. ...+
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~------~~~~- 234 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPN------AGNL- 234 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccC------CCCc-
Confidence 49999999863 344555433 3367789999999999999999999999999999999988875432 1112
Q ss_pred eEEEEEecCCCCEEEEEECCCcEEEEecCCCcee--eecC
Q 004924 668 PLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE--WGKL 705 (723)
Q Consensus 668 ~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~--w~~~ 705 (723)
....+|+| |++++.+|++||+|++|++++|..+ |..+
T Consensus 235 ~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 235 PLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred ceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence 35789999 9999999999999999999999864 5443
No 87
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6.7e-26 Score=235.39 Aligned_cols=326 Identities=16% Similarity=0.165 Sum_probs=245.3
Q ss_pred CCCCCEEEEEeCCCeEEEEeecccCCC-CceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccc
Q 004924 334 LPDADSAVCAKSLEKSVNLKLQLINEP-SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 412 (723)
Q Consensus 334 spdg~~la~~s~dg~v~iw~~~~~~~~-~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~ 412 (723)
.|.++++.+||.||.|++|+....... ...-...++. |.+.|+.++...+|+.|+++|.|.+|++|+......
T Consensus 34 a~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~--HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~---- 107 (735)
T KOG0308|consen 34 APNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEH--HSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT---- 107 (735)
T ss_pred CCCCceEEecCCCceEEEeccccccCCcccchhhhhhh--hHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc----
Confidence 477889999999999999998753211 1111222444 999999999999999999999999999999764210
Q ss_pred cceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCc--EEEE--------Ee-CC
Q 004924 413 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ--TLAT--------FA-NP 477 (723)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~~~~--~~~~--------~~-~~ 477 (723)
.++..+. .|.+.|.|+++- ...+|+|| |+.|.+||+.++. .+.. +. ++
T Consensus 108 ---------------~c~stir--~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~ 170 (735)
T KOG0308|consen 108 ---------------FCMSTIR--THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP 170 (735)
T ss_pred ---------------hhHhhhh--cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC
Confidence 1222222 699999999994 67888999 9999999999872 2222 22 77
Q ss_pred CCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeec
Q 004924 478 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 556 (723)
Q Consensus 478 ~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~ 556 (723)
...|.+++.++.| .|++|+..+.+++||.++++.+..++||+..|.++..++||+.+++++.||+|++||+...
T Consensus 171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ----- 245 (735)
T KOG0308|consen 171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ----- 245 (735)
T ss_pred ccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc-----
Confidence 8899999999999 9999999999999999999999999999999999999999999999999999999999873
Q ss_pred eeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCC-ceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC
Q 004924 557 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS 634 (723)
Q Consensus 557 ~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~-~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d 634 (723)
+++.+ ...|. ..|+++..+|+-..+++ +.||.|+.=|+++. ++...++. ..+|..+..+...+-+-+++.|
T Consensus 246 rCl~T-~~vH~---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~---daPv~~l~~~~~~~~~WvtTtd 318 (735)
T KOG0308|consen 246 RCLAT-YIVHK---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE---DAPVLKLHLHEHDNSVWVTTTD 318 (735)
T ss_pred ceeee-EEecc---CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC---CCchhhhhhccccCCceeeecc
Confidence 55554 33455 57999999999999999 49999999999884 33333332 5677777777555555778889
Q ss_pred CcEEEEECCCCcEE-------EEee-----------cccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecC
Q 004924 635 GHVKVFDTSTLELR-------CQIN-----------LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 635 g~I~iwd~~~~~~~-------~~~~-----------~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~ 696 (723)
+.|.-|..+-...+ .... .+..+..| +.. +...+.-. |.+++.|-..+|.+.+||+.
T Consensus 319 s~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~G--g~a--i~k~~mL~-dkRhVlTkDa~gnv~lwDIl 393 (735)
T KOG0308|consen 319 SSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPG--GAA--IKKHAMLN-DKRHVLTKDAKGNVALWDIL 393 (735)
T ss_pred ccceecCCccccccccCCCCCcccccCCCccccccCCCceeccC--chh--hhhhhhhc-CcceEeeecCCCCEEEEEee
Confidence 99999976532111 1000 01111112 111 22333344 67899999999999999997
Q ss_pred CCc
Q 004924 697 ESE 699 (723)
Q Consensus 697 ~~~ 699 (723)
...
T Consensus 394 ~~~ 396 (735)
T KOG0308|consen 394 ACV 396 (735)
T ss_pred eee
Confidence 654
No 88
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=7.9e-25 Score=217.50 Aligned_cols=269 Identities=14% Similarity=0.202 Sum_probs=220.8
Q ss_pred CCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCccccccc
Q 004924 334 LPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEE 413 (723)
Q Consensus 334 spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~ 413 (723)
.|....+.+|+.|.++.++|... ..+..+ ++| |.-.|+.+.|+|+...+++++.|..|+||.......
T Consensus 228 ~~s~~~ilTGG~d~~av~~d~~s----~q~l~~-~~G--h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~----- 295 (506)
T KOG0289|consen 228 IPSSSKILTGGEDKTAVLFDKPS----NQILAT-LKG--HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE----- 295 (506)
T ss_pred cCCCCcceecCCCCceEEEecch----hhhhhh-ccC--cceEEEEEEeccchhheeecCCcceEEeeccccccC-----
Confidence 34456789999999999999874 344333 666 999999999999999999999999999999764222
Q ss_pred ceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeC--CCCCeEEEEEcC
Q 004924 414 NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN--PPPIATYFILLP 488 (723)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~--~~~~v~~l~~~p 488 (723)
.... ..|..+|+.+..+ |+||++++ ||+..+.|+.+|.++..... ..-.+++.+|+|
T Consensus 296 -------------~~~~-----~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp 357 (506)
T KOG0289|consen 296 -------------PTSS-----RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP 357 (506)
T ss_pred -------------cccc-----ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC
Confidence 0011 1599999999998 99999999 99999999999988777653 334689999999
Q ss_pred CC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCC
Q 004924 489 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 567 (723)
Q Consensus 489 ~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~ 567 (723)
|| .|.+|..||.|+|||+.++..+..|.+|.++|..++|+.+|.+|++++.|+.|++||++.-+ .++++.....
T Consensus 358 DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~-----n~kt~~l~~~ 432 (506)
T KOG0289|consen 358 DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK-----NFKTIQLDEK 432 (506)
T ss_pred CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc-----ccceeecccc
Confidence 99 99999999999999999999999999999999999999999999999999999999999743 3343333332
Q ss_pred CCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCC--ceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEEC
Q 004924 568 PETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 642 (723)
Q Consensus 568 ~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~--~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~ 642 (723)
.++.+++|.+.|++++.+ .+=.|++++-.+. .++..+ ..|.+..+.+.|....+++++++.|..++++.+
T Consensus 433 ---~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~--~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 433 ---KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL--ADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ---ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh--hhcccccceeeecccceEEeeccchhheEEeec
Confidence 579999999999999984 6666777764443 344444 346788999999999999999999999888754
No 89
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6e-24 Score=193.92 Aligned_cols=293 Identities=14% Similarity=0.117 Sum_probs=224.7
Q ss_pred eeeCCCcccccccCCCCCEEEEEeCCCeEEEEeecccC-------CCCceeEEecCC-CCCCCceEEEEEeCCCCEEEEE
Q 004924 321 CFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLIN-------EPSECRTLLLPD-NSFGGRVVRLIYSHSGDFLVAL 392 (723)
Q Consensus 321 ~~~~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~-------~~~~~~~~~l~~-~~h~~~V~~l~fspdg~~las~ 392 (723)
.+++.+..+...|.|.|.+.++|+...+.+|......- .......+.+.. ..|.+.|.|.+|||+|..+|+|
T Consensus 28 ~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg 107 (350)
T KOG0641|consen 28 ILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG 107 (350)
T ss_pred EecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEec
Confidence 34455556667799999999999999999887543210 001110111111 2489999999999999999999
Q ss_pred ECCCcEEEEeccCCcc-cccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe------CCEEEEEe--CCcEEEE
Q 004924 393 TQTATHKLWKWQSNKQ-SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSAS--GGKISIF 463 (723)
Q Consensus 393 s~dg~i~iWd~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s------~~~l~s~s--dg~I~vw 463 (723)
+.|.+|++..+....+ ..|+.. ... -|.+.|..++|- +..|++++ |..|.+-
T Consensus 108 sndk~ik~l~fn~dt~~~~g~dl----------------e~n---mhdgtirdl~fld~~~s~~~il~s~gagdc~iy~t 168 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNATGHDL----------------EFN---MHDGTIRDLAFLDDPESGGAILASAGAGDCKIYIT 168 (350)
T ss_pred CCCceEEEEecccccccccCcce----------------eee---ecCCceeeeEEecCCCcCceEEEecCCCcceEEEe
Confidence 9999999987664433 122211 111 389999999997 56788888 5677777
Q ss_pred EcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcC-------cCCcEEEEEEcCCCCEEE
Q 004924 464 SLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-------HQNRITCLAYSLSLNVLV 535 (723)
Q Consensus 464 d~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~-------~~~~i~~l~~spdg~~l~ 535 (723)
|-.+|+..+.+.+|.+.|.++ ++-++ .+++|+.|.+|++||++-..++..+.. ..+.|.+++..|.|+.|+
T Consensus 169 dc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~ 247 (350)
T KOG0641|consen 169 DCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLA 247 (350)
T ss_pred ecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceee
Confidence 888999999999999998765 34467 999999999999999998888877643 236789999999999999
Q ss_pred EEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCcee---EEecCCC
Q 004924 536 SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHT---SQLVPDK 611 (723)
Q Consensus 536 s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~---~~~~~~~ 611 (723)
+|-.|....+||++.+. .++ -...|. ..|.++.|+|...|+++ +.|..|++-|+. |... .......
T Consensus 248 sg~~dssc~lydirg~r-----~iq-~f~phs---adir~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~~vv~e 317 (350)
T KOG0641|consen 248 SGHADSSCMLYDIRGGR-----MIQ-RFHPHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMVVAE 317 (350)
T ss_pred eccCCCceEEEEeeCCc-----eee-eeCCCc---cceeEEEeCCCceEEEEecccceEEEeecc-cchhhcCceEEEEe
Confidence 99999999999999964 444 234455 79999999999999999 599999999985 3221 1222235
Q ss_pred CCCCeEEEEEeeCCcEEEEEeCCCcEEEEECC
Q 004924 612 MDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 612 h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~ 643 (723)
|...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 318 hkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 318 HKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 78889999999999889999999999999764
No 90
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=6.6e-25 Score=220.01 Aligned_cols=291 Identities=13% Similarity=0.070 Sum_probs=230.4
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecC-----CCeeeeeccCCCCCCCeEEEEE
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS-----SKLVMTNDIAADPKDSISCFAL 447 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~h~~~V~~v~~ 447 (723)
|.-.|.|++++|++++.++++.||+|.=|++.++.. ... +|... .+...+... .+|...+.+++.
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~-----~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~av 210 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKK-----DRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAV 210 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeehhcCcc-----ccc----ccccchhhhhccCCCCccc-ccccceeEEEEE
Confidence 899999999999999999999999999999886543 111 11110 011111111 269999999999
Q ss_pred e--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEE
Q 004924 448 R--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT 523 (723)
Q Consensus 448 s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~ 523 (723)
+ |+|||+|+ |..|.||+..+.+.++.+.+|.+.|.+++|-... .+++++.|++|++|+++....+.++-||+..|.
T Consensus 211 S~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~ 290 (479)
T KOG0299|consen 211 SSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVL 290 (479)
T ss_pred cCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcccee
Confidence 9 99999999 9999999999999999999999999999998776 999999999999999999989999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCce
Q 004924 524 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH 603 (723)
Q Consensus 524 ~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~ 603 (723)
.+....-++.+-+|+.|+++++|++... .+-++.++. +.+.|++|-.+..++..+.+|.|.+|++.+.++
T Consensus 291 ~IdaL~reR~vtVGgrDrT~rlwKi~ee-------sqlifrg~~---~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 291 GIDALSRERCVTVGGRDRTVRLWKIPEE-------SQLIFRGGE---GSIDCVAFINDEHFVSGSDNGSIALWSLLKKKP 360 (479)
T ss_pred eechhcccceEEeccccceeEEEecccc-------ceeeeeCCC---CCeeeEEEecccceeeccCCceEEEeeecccCc
Confidence 9998888888888889999999999542 222445554 789999999876555557999999999999988
Q ss_pred eEEecCCC----------CCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCc----EEEEeecccccCCCCccCccceE
Q 004924 604 TSQLVPDK----------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE----LRCQINLTAYAQPGTISLELYPL 669 (723)
Q Consensus 604 ~~~~~~~~----------h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~----~~~~~~~~~~~~~g~~~~~v~~~ 669 (723)
+.+....+ +..+|++++..|...++++|+.+|.|++|.+..|- ++..+.. .+. ++
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---------~Gf--VN 429 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---------VGF--VN 429 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---------ccE--EE
Confidence 87765421 12389999999999999999999999999999883 2333321 233 44
Q ss_pred EEEEecCCCC-EEEEEECCCcEEEEec
Q 004924 670 VIAAHPLEPN-RIALGLTNGRVHVIEP 695 (723)
Q Consensus 670 ~v~~sp~d~~-~las~s~Dg~v~iWd~ 695 (723)
+++|++ +|+ ++|..+....+-=|-.
T Consensus 430 sl~f~~-sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 430 SLAFSN-SGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred EEEEcc-CCCEEEEecccccccceeeE
Confidence 999999 777 5555555555544543
No 91
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.2e-26 Score=221.75 Aligned_cols=268 Identities=16% Similarity=0.177 Sum_probs=213.9
Q ss_pred EEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeee
Q 004924 339 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNME 418 (723)
Q Consensus 339 ~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~ 418 (723)
.+++|+.||.|+|||+.+ ..|... +.. |.+.|..+++.. ..++++|.|.+|+.|.+... ..
T Consensus 81 ~~aSGs~DG~VkiWnlsq----R~~~~~-f~A--H~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~------p~---- 141 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQ----RECIRT-FKA--HEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP------PL---- 141 (433)
T ss_pred hhhccccCceEEEEehhh----hhhhhe-eec--ccCceeeEEecc--cceEEecCCcceeeeeccCC------cc----
Confidence 489999999999999983 444433 554 999999999988 56899999999999997631 11
Q ss_pred eEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC--eEEE
Q 004924 419 SQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAF 494 (723)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~--~l~s 494 (723)
+.+ ...+.+..+.-+ ++.+++| +..|.|||.....++..+.-..+.+.++.|+|.. .|++
T Consensus 142 -~ti--------------lg~s~~~gIdh~~~~~~FaTc-Ge~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas 205 (433)
T KOG0268|consen 142 -HTI--------------LGKSVYLGIDHHRKNSVFATC-GEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILAS 205 (433)
T ss_pred -eee--------------ecccccccccccccccccccc-CceeeecccccCCccceeecCCCceeEEecCCCcchheee
Confidence 111 134455556555 4455555 4569999999889999998888889999999988 8888
Q ss_pred EECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeE
Q 004924 495 GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN 574 (723)
Q Consensus 495 gs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~ 574 (723)
|+.|+.|.+||++++.+++.+. ....-+.++|+|.+-.+++|+.|..++.||++.- ..++. ...+|. ..|.
T Consensus 206 ~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l----~~p~~-v~~dhv---sAV~ 276 (433)
T KOG0268|consen 206 CASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNL----SRPLN-VHKDHV---SAVM 276 (433)
T ss_pred eccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhh----cccch-hhcccc---eeEE
Confidence 8899999999999999887764 3445678999998888999999999999999873 24444 455666 8999
Q ss_pred EEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEe
Q 004924 575 HIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 651 (723)
Q Consensus 575 ~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~ 651 (723)
++.|||.|+.+++ +.|.+|+||..+.+.....+.. ..-..|.++.||.|.+|+++||.|+.|++|.....+.+..+
T Consensus 277 dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 277 DVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred EeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence 9999999999998 6999999999988776555432 22567999999999999999999999999998766554443
No 92
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=6.1e-25 Score=230.03 Aligned_cols=272 Identities=15% Similarity=0.183 Sum_probs=223.5
Q ss_pred CCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEE-EEEe--
Q 004924 372 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC-FALR-- 448 (723)
Q Consensus 372 ~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-v~~s-- 448 (723)
+|...|..+++.+.. .++++|.||++++|+-..+.. +......+|.+-|.+ ++|.
T Consensus 12 gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~---------------------l~~~~~~~~~g~i~~~i~y~e~ 69 (745)
T KOG0301|consen 12 GHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY---------------------LETHAFEGPKGFIANSICYAES 69 (745)
T ss_pred cCccchheeEecCCe-EEeecCCCCceeeeeccCccc---------------------ccceecccCcceeeccceeccc
Confidence 499999999877665 689999999999998653322 111111146666655 6665
Q ss_pred -CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEE
Q 004924 449 -GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 526 (723)
Q Consensus 449 -~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~ 526 (723)
+..+++|+ |++|.+|...+..++.++.+|...|+|++...++.+++||.|.++++|-. +++...+.+|+..|.+++
T Consensus 70 ~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~ 147 (745)
T KOG0301|consen 70 DKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVA 147 (745)
T ss_pred cCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeee
Confidence 45688888 99999999999999999999999999998877778899999999999975 567778999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEE
Q 004924 527 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQ 606 (723)
Q Consensus 527 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~ 606 (723)
.-|++ .+++||.|.+|++|.-.+ .++ ...+|. ..|+.+++-+++.++-++.||.|+.|++ +|+++.+
T Consensus 148 ~l~e~-~~vTgsaDKtIklWk~~~-------~l~-tf~gHt---D~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~ 214 (745)
T KOG0301|consen 148 SLPEN-TYVTGSADKTIKLWKGGT-------LLK-TFSGHT---DCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLE 214 (745)
T ss_pred ecCCC-cEEeccCcceeeeccCCc-------hhh-hhccch---hheeeeEEecCCCeEeecCCceEEEEec-cCceeee
Confidence 99988 889999999999997643 344 456787 8999999999988887789999999999 7888877
Q ss_pred ecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEEC
Q 004924 607 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 686 (723)
Q Consensus 607 ~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~ 686 (723)
+. +|...|.++...+++..++++++|++++||+.. .+.+.+..+ ...+| ++.+-+ +|. +++|+.
T Consensus 215 ~~--ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP--------ttsiW--sa~~L~-NgD-Ivvg~S 278 (745)
T KOG0301|consen 215 MH--GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP--------TTSIW--SAKVLL-NGD-IVVGGS 278 (745)
T ss_pred ee--ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC--------ccceE--EEEEee-CCC-EEEecc
Confidence 75 579999999988899999999999999999987 666666532 33455 777766 554 788889
Q ss_pred CCcEEEEecC
Q 004924 687 NGRVHVIEPL 696 (723)
Q Consensus 687 Dg~v~iWd~~ 696 (723)
||.||||...
T Consensus 279 DG~VrVfT~~ 288 (745)
T KOG0301|consen 279 DGRVRVFTVD 288 (745)
T ss_pred CceEEEEEec
Confidence 9999999876
No 93
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.1e-24 Score=228.87 Aligned_cols=272 Identities=17% Similarity=0.201 Sum_probs=220.9
Q ss_pred EEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEE
Q 004924 378 VRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA 455 (723)
Q Consensus 378 ~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~ 455 (723)
.-+.|+..+ .||.| ....|.+|+-.++ .+..... -+...|+++.|+ |.+|++|
T Consensus 181 nlldWss~n-~laVa-lg~~vylW~~~s~---------------------~v~~l~~--~~~~~vtSv~ws~~G~~LavG 235 (484)
T KOG0305|consen 181 NLLDWSSAN-VLAVA-LGQSVYLWSASSG---------------------SVTELCS--FGEELVTSVKWSPDGSHLAVG 235 (484)
T ss_pred hHhhcccCC-eEEEE-ecceEEEEecCCC---------------------ceEEeEe--cCCCceEEEEECCCCCEEEEe
Confidence 457788444 34444 3457778775532 2222111 237889999999 9999999
Q ss_pred e-CCcEEEEEcCCCcEEEEEeC-CCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEE-EcCcCCcEEEEEEcCCCC
Q 004924 456 S-GGKISIFSLETFQTLATFAN-PPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLN 532 (723)
Q Consensus 456 s-dg~I~vwd~~~~~~~~~~~~-~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~-l~~~~~~i~~l~~spdg~ 532 (723)
. +|.|.|||..+.+.+..+.+ |...|.+++|... .+.+|+.|+.|..+|++..+.... +.+|...|..++|++|+.
T Consensus 236 ~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~-~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~ 314 (484)
T KOG0305|consen 236 TSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSS-VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGN 314 (484)
T ss_pred ecCCeEEEEehhhccccccccCCcCceeEEEeccCc-eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCC
Confidence 9 99999999999999999998 9999999999822 899999999999999998766554 888999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCC-CEEEEE---cCCcEEEEECCCCceeEEec
Q 004924 533 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLSI---HEGQIDVYEAPTLNHTSQLV 608 (723)
Q Consensus 533 ~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg-~~l~~s---~dg~I~vwd~~~~~~~~~~~ 608 (723)
++++|+.|+.+.|||.... .+.. ....|. ..|..++|+|-. ..||+| .|+.|++||..+++.+..+.
T Consensus 315 ~lASGgnDN~~~Iwd~~~~-----~p~~-~~~~H~---aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd 385 (484)
T KOG0305|consen 315 QLASGGNDNVVFIWDGLSP-----EPKF-TFTEHT---AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD 385 (484)
T ss_pred eeccCCCccceEeccCCCc-----cccE-EEeccc---eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc
Confidence 9999999999999999552 3333 344566 899999999975 556663 78999999999999988875
Q ss_pred CCCCCCCeEEEEEeeCCcEEEE--EeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEEC
Q 004924 609 PDKMDLPITYATYSCDGKCIYV--SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 686 (723)
Q Consensus 609 ~~~h~~~v~~l~~spdg~~l~s--gs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~ 686 (723)
. ...|.++.|++..+-|++ |..++.|.||+..+.+.+..+.+| . ..++.++++| ||..+++|+.
T Consensus 386 t---gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH--------~--~RVl~la~SP-dg~~i~t~a~ 451 (484)
T KOG0305|consen 386 T---GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH--------T--SRVLYLALSP-DGETIVTGAA 451 (484)
T ss_pred c---CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC--------c--ceeEEEEECC-CCCEEEEecc
Confidence 3 788999999999876665 455789999999998888888632 2 2366999999 8999999999
Q ss_pred CCcEEEEecCCC
Q 004924 687 NGRVHVIEPLES 698 (723)
Q Consensus 687 Dg~v~iWd~~~~ 698 (723)
|.++++|++-..
T Consensus 452 DETlrfw~~f~~ 463 (484)
T KOG0305|consen 452 DETLRFWNLFDE 463 (484)
T ss_pred cCcEEeccccCC
Confidence 999999999764
No 94
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=1.4e-23 Score=229.86 Aligned_cols=222 Identities=14% Similarity=0.146 Sum_probs=175.8
Q ss_pred CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCC-C-eEEEEECCCcEEEEeCCCCc--------EEEEEcCcCCcEEEEE
Q 004924 457 GGKISIFSLETFQTLATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKK--------TKAKLKGHQNRITCLA 526 (723)
Q Consensus 457 dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~-~-~l~sgs~dg~I~iwd~~~~~--------~~~~l~~~~~~i~~l~ 526 (723)
++.|++|+..+...+..+.+|...|.+++|+|+ + .|++|+.||+|++||+.++. ++..+.+|...|.+++
T Consensus 53 ~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVa 132 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIID 132 (568)
T ss_pred eeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEE
Confidence 688999999888888889999999999999997 5 99999999999999997642 3456788999999999
Q ss_pred EcCCCCE-EEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCcee
Q 004924 527 YSLSLNV-LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHT 604 (723)
Q Consensus 527 ~spdg~~-l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~ 604 (723)
|+|++.. +++++.|++|++||++++.. +..+. +. ..|.+++|+|+|.+|++ +.|+.|+|||+++++.+
T Consensus 133 f~P~g~~iLaSgS~DgtIrIWDl~tg~~-----~~~i~--~~---~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 133 WNPMNYYIMCSSGFDSFVNIWDIENEKR-----AFQIN--MP---KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred ECCCCCeEEEEEeCCCeEEEEECCCCcE-----EEEEe--cC---CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 9999876 57899999999999998642 22222 22 57999999999999998 58999999999999988
Q ss_pred EEecCCCCCCCeE-----EEEEeeCCcEEEEEeCCC----cEEEEECCC-CcEEEEeecccccCCCCccCccceEEEEEe
Q 004924 605 SQLVPDKMDLPIT-----YATYSCDGKCIYVSCKSG----HVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAH 674 (723)
Q Consensus 605 ~~~~~~~h~~~v~-----~l~~spdg~~l~sgs~dg----~I~iwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~v~~s 674 (723)
.++.. |.+.+. ...|++++.+|++++.|+ .|+|||+++ ++.+..+.. +....++...|.
T Consensus 203 ~tl~g--H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l---------d~~~~~L~p~~D 271 (568)
T PTZ00420 203 SSFHI--HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI---------DNASAPLIPHYD 271 (568)
T ss_pred EEEec--ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe---------cCCccceEEeee
Confidence 88764 454432 234568999999988774 799999995 555555432 111222234555
Q ss_pred cCCCCEEEEEECCCcEEEEecCCCc
Q 004924 675 PLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 675 p~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
+.++.++++|+.|++|++|++..+.
T Consensus 272 ~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 272 ESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CCCCCEEEEEECCCeEEEEEccCCc
Confidence 5468899999999999999997764
No 95
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=2.8e-24 Score=224.63 Aligned_cols=240 Identities=13% Similarity=0.149 Sum_probs=184.2
Q ss_pred CEEEEEe-CCcEEEEEcCCCcEEEEE-------------------------------------eCCCCCeEEEEEcCCC-
Q 004924 450 SHLFSAS-GGKISIFSLETFQTLATF-------------------------------------ANPPPIATYFILLPQD- 490 (723)
Q Consensus 450 ~~l~s~s-dg~I~vwd~~~~~~~~~~-------------------------------------~~~~~~v~~l~~~p~~- 490 (723)
..+++|+ |++|++||+..+..-..+ -.....+.+++.+|+|
T Consensus 393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq 472 (1080)
T KOG1408|consen 393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ 472 (1080)
T ss_pred cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc
Confidence 4577888 999999999752211100 0123468999999999
Q ss_pred eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcC---CCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCC
Q 004924 491 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL---SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 567 (723)
Q Consensus 491 ~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~sp---dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~ 567 (723)
+||+|...|.++||++..-+....+..|...|.|+.|+. ..+.|++++.|+-|.|||+... ..+.....+|.
T Consensus 473 hLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn-----y~l~qtld~HS 547 (1080)
T KOG1408|consen 473 HLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN-----YDLVQTLDGHS 547 (1080)
T ss_pred eecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc-----cchhhhhcccc
Confidence 999999999999999998888888999999999999986 3468999999999999999763 33333556777
Q ss_pred CCCCCeEEEEEccCC--CEEEE-EcCCcEEEEECCC-CceeEEecCCC---CCCCeEEEEEeeCCcEEEEEeCCCcEEEE
Q 004924 568 PETTIVNHIQFHPDQ--IHLLS-IHEGQIDVYEAPT-LNHTSQLVPDK---MDLPITYATYSCDGKCIYVSCKSGHVKVF 640 (723)
Q Consensus 568 ~~~~~v~~l~~spdg--~~l~~-s~dg~I~vwd~~~-~~~~~~~~~~~---h~~~v~~l~~spdg~~l~sgs~dg~I~iw 640 (723)
..|+++.|.-+| ..+++ |.|..|. |+... ......+..+. ....+..++..|..+++++++.|..|+||
T Consensus 548 ---ssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif 623 (1080)
T KOG1408|consen 548 ---SSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIF 623 (1080)
T ss_pred ---cceeEEEEeecCCceEEEeccCchhhh-eehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEE
Confidence 899999998877 55666 5776664 34322 11111121111 15678999999999999999999999999
Q ss_pred ECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCceeeecCC
Q 004924 641 DTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLP 706 (723)
Q Consensus 641 d~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~w~~~~ 706 (723)
++.+|+..+.|++. +++.-..+.+...| .|.|+|+...|.++.++|..+|++.-....
T Consensus 624 ~i~sgKq~k~FKgs-------~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~G 681 (1080)
T KOG1408|consen 624 DIESGKQVKSFKGS-------RDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTG 681 (1080)
T ss_pred eccccceeeeeccc-------ccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcC
Confidence 99999999999853 33333355788999 899999999999999999999998755533
No 96
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.7e-24 Score=204.81 Aligned_cols=290 Identities=14% Similarity=0.120 Sum_probs=208.7
Q ss_pred cCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEE
Q 004924 368 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 447 (723)
Q Consensus 368 l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 447 (723)
|.+ |.+.|++++||.||++|||++.|++|++|++..... ....+++... .-+.-+.+.|
T Consensus 82 LKg--H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~----------------~eHr~~R~nv---e~dhpT~V~F 140 (420)
T KOG2096|consen 82 LKG--HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN----------------KEHRCIRQNV---EYDHPTRVVF 140 (420)
T ss_pred hhc--cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh----------------hhhhHhhccc---cCCCceEEEE
Confidence 555 999999999999999999999999999999875222 1111222111 1223567788
Q ss_pred e---CCEEEEEe-CCcEEEEEcCC---CcEEEE--------E-eCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCc
Q 004924 448 R---GSHLFSAS-GGKISIFSLET---FQTLAT--------F-ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK 510 (723)
Q Consensus 448 s---~~~l~s~s-dg~I~vwd~~~---~~~~~~--------~-~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~ 510 (723)
. ...++++- ..++++|.+.. |..... + +.|...+..+-...++ +|++++.|..|.+|+++ |+
T Consensus 141 apDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq 219 (420)
T KOG2096|consen 141 APDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ 219 (420)
T ss_pred CCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc
Confidence 8 33455555 67899997642 221111 1 2345556666666677 99999999999999998 89
Q ss_pred EEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC---CCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE
Q 004924 511 TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV---GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 587 (723)
Q Consensus 511 ~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~---~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~ 587 (723)
.+..+......-+..+.+|+|+++++++-.--++||.+- .|+........ -..+|. ..|.+++|+|+...+++
T Consensus 220 ~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf-~LkGH~---saV~~~aFsn~S~r~vt 295 (420)
T KOG2096|consen 220 LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF-SLKGHQ---SAVLAAAFSNSSTRAVT 295 (420)
T ss_pred eeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhh-eeccch---hheeeeeeCCCcceeEE
Confidence 999888877788889999999999999999999999863 33322222222 135676 89999999999999998
Q ss_pred -EcCCcEEEEECCC----C---ceeEEecCC--CCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeeccccc
Q 004924 588 -IHEGQIDVYEAPT----L---NHTSQLVPD--KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA 657 (723)
Q Consensus 588 -s~dg~I~vwd~~~----~---~~~~~~~~~--~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~ 657 (723)
+.||+++|||+.- + +.+++.... ...+....+.++|+|+.|+.+. ...+.+|..++|+....+.-
T Consensus 296 vSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~---- 370 (420)
T KOG2096|consen 296 VSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELED---- 370 (420)
T ss_pred EecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHH----
Confidence 8999999999752 1 122222111 1134445899999999887664 46799999999987766652
Q ss_pred CCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEec
Q 004924 658 QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 695 (723)
Q Consensus 658 ~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~ 695 (723)
.|+..|. +++|+| +|+++|++| |..+++..-
T Consensus 371 ---~h~~~Is--~is~~~-~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 371 ---IHSTTIS--SISYSS-DGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred ---hhcCcee--eEEecC-CCcEEeeec-ceeeeeecC
Confidence 1355555 999999 899999997 667888764
No 97
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.2e-25 Score=230.35 Aligned_cols=279 Identities=18% Similarity=0.206 Sum_probs=220.1
Q ss_pred EEEEe-CCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEE
Q 004924 379 RLIYS-HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA 455 (723)
Q Consensus 379 ~l~fs-pdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~ 455 (723)
.+..+ |.++||+|||.||.|++|++..... . .+..... ..+.|.+.|+.+... ++.|+++
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~---~------------~s~~~~a--sme~HsDWVNDiiL~~~~~tlIS~ 91 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSN---E------------PSTPYIA--SMEHHSDWVNDIILCGNGKTLISA 91 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccC---C------------cccchhh--hhhhhHhHHhhHHhhcCCCceEEe
Confidence 34444 5678899999999999999764221 0 0000111 112699999999888 7799999
Q ss_pred e-CCcEEEEEcCCC--cEEEEEeCCCCCeEEEEE-cCCC-eEEEEECCCcEEEEeCCCCc--EEE--------EEc-CcC
Q 004924 456 S-GGKISIFSLETF--QTLATFANPPPIATYFIL-LPQD-LFAFGFDDSSILVHCPCTKK--TKA--------KLK-GHQ 519 (723)
Q Consensus 456 s-dg~I~vwd~~~~--~~~~~~~~~~~~v~~l~~-~p~~-~l~sgs~dg~I~iwd~~~~~--~~~--------~l~-~~~ 519 (723)
+ |-+|++|+...+ -+..++..|.+.|.|+++ .++. .+|+|+-|+.|++||++++. .+. .+. |+.
T Consensus 92 SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k 171 (735)
T KOG0308|consen 92 SSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK 171 (735)
T ss_pred cCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence 9 999999999877 678889999999999999 7777 99999999999999999872 222 223 788
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEEC
Q 004924 520 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEA 598 (723)
Q Consensus 520 ~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~ 598 (723)
.+|++++.++.|..+++|+..+.+++||.+++. .+..+. ||. ..|..+..++||..+++ ++||+|++||+
T Consensus 172 ~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~-----kimkLr-GHT---dNVr~ll~~dDGt~~ls~sSDgtIrlWdL 242 (735)
T KOG0308|consen 172 DSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK-----KIMKLR-GHT---DNVRVLLVNDDGTRLLSASSDGTIRLWDL 242 (735)
T ss_pred cceeeeecCCcceEEEecCcccceEEecccccc-----ceeeee-ccc---cceEEEEEcCCCCeEeecCCCceEEeeec
Confidence 899999999999999999999999999999953 333344 787 89999999999999998 69999999999
Q ss_pred CCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCC
Q 004924 599 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 678 (723)
Q Consensus 599 ~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 678 (723)
...+++.++.. |...|+++..+|+-.++++|+.||.|+.=|+.+......+.. .++++. .+..+. ..
T Consensus 243 gqQrCl~T~~v--H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick--------~daPv~--~l~~~~-~~ 309 (735)
T KOG0308|consen 243 GQQRCLATYIV--HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK--------EDAPVL--KLHLHE-HD 309 (735)
T ss_pred cccceeeeEEe--ccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeec--------CCCchh--hhhhcc-cc
Confidence 99999999875 577799999999999999999999999999998532222211 144444 555554 23
Q ss_pred CEEEEEECCCcEEEEecC
Q 004924 679 NRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 679 ~~las~s~Dg~v~iWd~~ 696 (723)
+-+-+++.|+.|+-|...
T Consensus 310 ~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 310 NSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred CCceeeeccccceecCCc
Confidence 334667789999999764
No 98
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.6e-24 Score=228.97 Aligned_cols=283 Identities=18% Similarity=0.226 Sum_probs=224.7
Q ss_pred CCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCE
Q 004924 372 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSH 451 (723)
Q Consensus 372 ~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~ 451 (723)
.|+..-+.++|.|+|.+|++++.||.|++|+...... ....+. .+...|.+++..+++
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e-----------------~P~ti~-----~~g~~v~~ia~~s~~ 68 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE-----------------EPETID-----ISGELVSSIACYSNH 68 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc-----------------CCchhh-----ccCceeEEEeecccc
Confidence 3899999999999999999999999999999664311 001110 266778888877668
Q ss_pred EEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcC
Q 004924 452 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL 529 (723)
Q Consensus 452 l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~sp 529 (723)
|++|+ +++|.+|.+.+++.-..+....-++.+++++.+| .+|.||.|-.|++.++.+......+++|.++|.++.|+|
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p 148 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP 148 (933)
T ss_pred eEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC
Confidence 88888 9999999999887766666667788999999999 999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCC-CCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEe
Q 004924 530 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP-ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 607 (723)
Q Consensus 530 dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~-~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~ 607 (723)
++++|++.+.||.|++||+.++..... +..+...... ....+..++|+|+|..+++ +.|+.|.+|+..+......+
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~~t--l~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L 226 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILSKT--LTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL 226 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhhhh--cccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheee
Confidence 999999999999999999998654322 1111111100 0146778999999655555 89999999999999998888
Q ss_pred cCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECC
Q 004924 608 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 687 (723)
Q Consensus 608 ~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D 687 (723)
....+...+..++|||+|+|||+++.||.|.|||.++-.. +.+ .-.|++++|.| +.+-+-.-...
T Consensus 227 r~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~~~-------------~~~Vc~~aw~p-~~n~it~~~~~ 291 (933)
T KOG1274|consen 227 RDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-HEF-------------KRAVCCEAWKP-NANAITLITAL 291 (933)
T ss_pred cccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-ccc-------------cceeEEEecCC-CCCeeEEEeec
Confidence 8766666699999999999999999999999999998322 111 12356999999 67766655555
Q ss_pred CcEEEE
Q 004924 688 GRVHVI 693 (723)
Q Consensus 688 g~v~iW 693 (723)
|...+|
T Consensus 292 g~~~~~ 297 (933)
T KOG1274|consen 292 GTLGVS 297 (933)
T ss_pred cccccC
Confidence 655554
No 99
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.6e-24 Score=215.65 Aligned_cols=277 Identities=15% Similarity=0.193 Sum_probs=217.5
Q ss_pred CCCCCceeeeCCCcccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEE
Q 004924 314 DDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT 393 (723)
Q Consensus 314 h~~v~s~~~~~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s 393 (723)
|..|.+.+|++. .|. -+|+++ .-.+.||+... ...... +.. ....|.++.|-.||+.||+|.
T Consensus 26 ~~~vssl~fsp~--------~P~--d~aVt~-S~rvqly~~~~----~~~~k~-~sr--Fk~~v~s~~fR~DG~LlaaGD 87 (487)
T KOG0310|consen 26 HNSVSSLCFSPK--------HPY--DFAVTS-SVRVQLYSSVT----RSVRKT-FSR--FKDVVYSVDFRSDGRLLAAGD 87 (487)
T ss_pred cCcceeEecCCC--------CCC--ceEEec-ccEEEEEecch----hhhhhh-HHh--hccceeEEEeecCCeEEEccC
Confidence 445667677663 121 134433 35678888763 111111 221 578999999999999999999
Q ss_pred CCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCc
Q 004924 394 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ 469 (723)
Q Consensus 394 ~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~~~~ 469 (723)
..|.|+|+|..+. .++..+. +|+.+|..+.|+ +..+++|+ |+.+++||+.+..
T Consensus 88 ~sG~V~vfD~k~r---------------------~iLR~~~--ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~ 144 (487)
T KOG0310|consen 88 ESGHVKVFDMKSR---------------------VILRQLY--AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY 144 (487)
T ss_pred CcCcEEEeccccH---------------------HHHHHHh--hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE
Confidence 9999999995421 0111111 699999999999 66788888 7899999999988
Q ss_pred EEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCC-cEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004924 470 TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW 546 (723)
Q Consensus 470 ~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~-~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vw 546 (723)
....+.+|.+.|.|.+|+|.. .+++||.||.|++||+++. ..+..+. |..+|..+.+-|.|..+++++ ...++||
T Consensus 145 v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vkVW 222 (487)
T KOG0310|consen 145 VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVKVW 222 (487)
T ss_pred EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEEEE
Confidence 766888999999999999987 8999999999999999986 6666676 999999999999999999887 4689999
Q ss_pred eCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCC
Q 004924 547 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG 625 (723)
Q Consensus 547 d~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg 625 (723)
|+.+|.. .+. ....|. ..|+|+++..++..|++ |-|+.+++||+.+.+.+..+.. .++|.+++.+|++
T Consensus 223 Dl~~G~q----ll~-~~~~H~---KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---~~pvLsiavs~dd 291 (487)
T KOG0310|consen 223 DLTTGGQ----LLT-SMFNHN---KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---PGPVLSIAVSPDD 291 (487)
T ss_pred EecCCce----ehh-hhhccc---ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---ccceeeEEecCCC
Confidence 9997532 222 233354 69999999999999998 6999999999989999888864 7899999999999
Q ss_pred cEEEEEeCCCcEEEEECCC
Q 004924 626 KCIYVSCKSGHVKVFDTST 644 (723)
Q Consensus 626 ~~l~sgs~dg~I~iwd~~~ 644 (723)
+.++.|..||.+.+=+...
T Consensus 292 ~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 292 QTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred ceEEEecccceeeeehhhc
Confidence 9999999999987765443
No 100
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=5.3e-24 Score=202.80 Aligned_cols=270 Identities=12% Similarity=0.115 Sum_probs=205.0
Q ss_pred CCCceEEEEEeC-CCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--C
Q 004924 373 FGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 449 (723)
Q Consensus 373 h~~~V~~l~fsp-dg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~ 449 (723)
-.+.|.+++||| ....++++|-||+||+|+++......++ .+. .|.++|.+++|+ |
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k----------------a~~-----~~~~PvL~v~Wsddg 84 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK----------------AQQ-----SHDGPVLDVCWSDDG 84 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccch----------------hhh-----ccCCCeEEEEEccCC
Confidence 478999999999 5556668888999999998852110111 111 489999999999 8
Q ss_pred CEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC---eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEE
Q 004924 450 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 525 (723)
Q Consensus 450 ~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~---~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l 525 (723)
..+++|+ |+.+++||+.++ ....+..|..+|.++.|-+.. .|++||.|++|+.||.+...++.++. -...+.++
T Consensus 85 skVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 85 SKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred ceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 8888888 999999999999 556778999999999997765 89999999999999999988888876 44566665
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCc--
Q 004924 526 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN-- 602 (723)
Q Consensus 526 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~-- 602 (723)
..- ..+++++..++.|.+|+++++...... +...-. -.++|++..+|..-.+. +-+|.+.|..+..+.
T Consensus 163 Dv~--~pm~vVata~r~i~vynL~n~~te~k~----~~SpLk---~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~ 233 (347)
T KOG0647|consen 163 DVL--YPMAVVATAERHIAVYNLENPPTEFKR----IESPLK---WQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK 233 (347)
T ss_pred hcc--CceeEEEecCCcEEEEEcCCCcchhhh----hcCccc---ceeeEEEEEecCCceEeeeecceEEEEecCCCCcc
Confidence 443 357889999999999999875322111 111111 57899999988766666 689999999888763
Q ss_pred eeEEecCCCC-------CCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEec
Q 004924 603 HTSQLVPDKM-------DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 675 (723)
Q Consensus 603 ~~~~~~~~~h-------~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp 675 (723)
.-.+|+.+.. -..|.+++|+|.-..|++++.||+..+||-.....+..... +..+|. +++|+.
T Consensus 234 ~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~--------~~qpIt--cc~fn~ 303 (347)
T KOG0647|consen 234 DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET--------HPQPIT--CCSFNR 303 (347)
T ss_pred CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCc--------CCCccc--eeEecC
Confidence 2233333211 23578899999999999999999999999988776665543 245555 999999
Q ss_pred CCCCEEEEEE
Q 004924 676 LEPNRIALGL 685 (723)
Q Consensus 676 ~d~~~las~s 685 (723)
+|.++|-+.
T Consensus 304 -~G~ifaYA~ 312 (347)
T KOG0647|consen 304 -NGSIFAYAL 312 (347)
T ss_pred -CCCEEEEEe
Confidence 899888653
No 101
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=4.4e-23 Score=225.95 Aligned_cols=220 Identities=11% Similarity=0.063 Sum_probs=168.1
Q ss_pred CCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCc--------EEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEE
Q 004924 437 DPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ--------TLATFANPPPIATYFILLPQD--LFAFGFDDSSIL 502 (723)
Q Consensus 437 ~h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~~~~--------~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~ 502 (723)
+|.++|.+++|+ +.+|++|+ ||+|++||+.++. .+..+.+|...|.+++|+|++ .+++|+.|++|+
T Consensus 72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIr 151 (568)
T PTZ00420 72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVN 151 (568)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEE
Confidence 799999999999 57999999 9999999997642 344677899999999999998 567999999999
Q ss_pred EEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCe-----EEEE
Q 004924 503 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV-----NHIQ 577 (723)
Q Consensus 503 iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v-----~~l~ 577 (723)
+||+++++.+..+. |...|.+++|+|+|..|++++.|+.|++||+++++. +.+ ..+|. +.+ ....
T Consensus 152 IWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~-----i~t-l~gH~---g~~~s~~v~~~~ 221 (568)
T PTZ00420 152 IWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI-----ASS-FHIHD---GGKNTKNIWIDG 221 (568)
T ss_pred EEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE-----EEE-Eeccc---CCceeEEEEeee
Confidence 99999998877776 667899999999999999999999999999998643 232 23444 332 2334
Q ss_pred EccCCCEEEE-EcC----CcEEEEECCC-CceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEe
Q 004924 578 FHPDQIHLLS-IHE----GQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 651 (723)
Q Consensus 578 ~spdg~~l~~-s~d----g~I~vwd~~~-~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~ 651 (723)
|++++.+|++ |.+ ++|+|||+++ ++++..+..+.+.+.+......++|.++++|+.|+.|++|++..+.. ..+
T Consensus 222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l 300 (568)
T PTZ00420 222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKV 300 (568)
T ss_pred EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE-Eee
Confidence 5689888887 555 3799999985 56666654433334444444456688999999999999999987743 223
Q ss_pred ecccccCCCCccCccceEEEEEec
Q 004924 652 NLTAYAQPGTISLELYPLVIAAHP 675 (723)
Q Consensus 652 ~~~~~~~~g~~~~~v~~~~v~~sp 675 (723)
.. ..+..+.. +++|.|
T Consensus 301 ~~------~~s~~p~~--g~~f~P 316 (568)
T PTZ00420 301 NE------YKSCSPFR--SFGFLP 316 (568)
T ss_pred cc------cccCCCcc--ceEEcc
Confidence 21 12234445 789999
No 102
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=7.6e-23 Score=206.81 Aligned_cols=349 Identities=15% Similarity=0.193 Sum_probs=250.1
Q ss_pred CCcceeeccCCCC-CCceeeeCCCcccccccCCCCCEEEEEeCC--------CeEEEEeecccCCCCceeEEecCCCCCC
Q 004924 304 EGRPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSL--------EKSVNLKLQLINEPSECRTLLLPDNSFG 374 (723)
Q Consensus 304 ~~~~~~~~~~h~~-v~s~~~~~~~~~~~~~~spdg~~la~~s~d--------g~v~iw~~~~~~~~~~~~~~~l~~~~h~ 374 (723)
+....+.|.||.. +.++..+|+ --.+++|-.- ..++|||..+ -..+..+. ...
T Consensus 93 ee~~Qr~y~GH~ddikc~~vHPd-----------ri~vatGQ~ag~~g~~~~phvriWdsv~---L~TL~V~g----~f~ 154 (626)
T KOG2106|consen 93 EERSQRHYLGHNDDIKCMAVHPD-----------RIRVATGQGAGTSGRPLQPHVRIWDSVT---LSTLHVIG----FFD 154 (626)
T ss_pred hhhhcccccCCCCceEEEeecCC-----------ceeeccCcccccCCCcCCCeeeeccccc---ceeeeeec----ccc
Confidence 3445677888887 777665554 3334433222 2489999653 22333222 257
Q ss_pred CceEEEEEeC--CCCEEEEEEC--CCcEEEEeccCCccccccc--------ceee--------------eeEEEecCCCe
Q 004924 375 GRVVRLIYSH--SGDFLVALTQ--TATHKLWKWQSNKQSLEEE--------NVNM--------------ESQLYQPSSKL 428 (723)
Q Consensus 375 ~~V~~l~fsp--dg~~las~s~--dg~i~iWd~~~~~~~~g~~--------~~~~--------------~~~~~~~~~~~ 428 (723)
..|.|++||+ .|.+|+.... +..+.+||++.+.. .++. ...+ ....|+...+.
T Consensus 155 ~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~-~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~ 233 (626)
T KOG2106|consen 155 RGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAK-LGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGS 233 (626)
T ss_pred ccceeeeecccCCCceEEEecCCCccccchhhchhhhc-cCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCc
Confidence 7999999998 3566655533 56789999987654 0100 0111 13678888777
Q ss_pred eeeec--cCCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEE
Q 004924 429 VMTND--IAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVH 504 (723)
Q Consensus 429 ~~~~~--~~~~h~~~V~~v~~s-~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iw 504 (723)
+.+.. +.+....-|.|++|. +.-+++|. +|.|.||+..+.+..+....|++.|.+++...+|.|++|+.|..|..|
T Consensus 234 l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~W 313 (626)
T KOG2106|consen 234 LVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILW 313 (626)
T ss_pred eEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEec
Confidence 65432 112234779999999 77888888 999999999888877777799999999999999977779999999999
Q ss_pred eCCCCc-----------E-----------------------------EEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 004924 505 CPCTKK-----------T-----------------------------KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLC 544 (723)
Q Consensus 505 d~~~~~-----------~-----------------------------~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~ 544 (723)
|-.-.+ . .....+|......++.+|+...+++++.|+.++
T Consensus 314 d~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~ 393 (626)
T KOG2106|consen 314 DDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVR 393 (626)
T ss_pred cccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEE
Confidence 832100 0 011235777788899999999999999999999
Q ss_pred EEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEee
Q 004924 545 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 623 (723)
Q Consensus 545 vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~sp 623 (723)
+|+ +. +..-+.... .++.++.|+|.| .++.| ..|...+.|.++...+..-. . ..+++.+.|+|
T Consensus 394 lW~-~~------k~~wt~~~~-----d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~--d-~~~ls~v~ysp 457 (626)
T KOG2106|consen 394 LWN-DH------KLEWTKIIE-----DPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT--D-NEQLSVVRYSP 457 (626)
T ss_pred Ecc-CC------ceeEEEEec-----CceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe--c-CCceEEEEEcC
Confidence 999 22 222211112 688999999999 77764 88999999999866554433 2 88999999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCC-cEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCC
Q 004924 624 DGKCIYVSCKSGHVKVFDTSTL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 624 dg~~l~sgs~dg~I~iwd~~~~-~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~ 697 (723)
+|.+||.|+.|+.|++|.+... ........+ +. ..++.+.|++ |++++.+-|-|-.|-.|.+..
T Consensus 458 ~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~-------~g--s~ithLDwS~-Ds~~~~~~S~d~eiLyW~~~~ 522 (626)
T KOG2106|consen 458 DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC-------SG--SPITHLDWSS-DSQFLVSNSGDYEILYWKPSE 522 (626)
T ss_pred CCCEEEEecCCCeEEEEEECCCCcEEEEeeee-------cC--ceeEEeeecC-CCceEEeccCceEEEEEcccc
Confidence 9999999999999999998754 433333221 23 3466999999 999999999999999996543
No 103
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=8e-24 Score=210.38 Aligned_cols=278 Identities=12% Similarity=0.091 Sum_probs=227.5
Q ss_pred CCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCE
Q 004924 374 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 451 (723)
Q Consensus 374 ~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~ 451 (723)
...+.++...|....+++|+.|.++.++|..++ +++..+. ||...|+.+.|+ ...
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~---------------------q~l~~~~--Gh~kki~~v~~~~~~~~ 275 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSN---------------------QILATLK--GHTKKITSVKFHKDLDT 275 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchh---------------------hhhhhcc--CcceEEEEEEeccchhh
Confidence 346778888887778999999999988886532 2233222 899999999999 667
Q ss_pred EEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcC--cCCcEEEEEE
Q 004924 452 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAY 527 (723)
Q Consensus 452 l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~--~~~~i~~l~~ 527 (723)
+++++ |..|+||.............|..+|+.+..+|.| +|++++.||+..+.|+++|..+..... ..-.+++.+|
T Consensus 276 v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~f 355 (506)
T KOG0289|consen 276 VITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAF 355 (506)
T ss_pred eeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeE
Confidence 88888 9999999998887778888999999999999999 999999999999999999998876653 3345899999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEE
Q 004924 528 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQ 606 (723)
Q Consensus 528 spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~ 606 (723)
+|||..+.+|+.||.+++||++++. .+. -+.+|. ++|..++|+.+|.|+++ +.|+.|++||++..+...+
T Consensus 356 HpDgLifgtgt~d~~vkiwdlks~~-----~~a-~Fpght---~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt 426 (506)
T KOG0289|consen 356 HPDGLIFGTGTPDGVVKIWDLKSQT-----NVA-KFPGHT---GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKT 426 (506)
T ss_pred cCCceEEeccCCCceEEEEEcCCcc-----ccc-cCCCCC---CceeEEEeccCceEEEEEecCCeEEEEEehhhcccce
Confidence 9999999999999999999999853 233 244577 89999999999999999 5888899999999888888
Q ss_pred ecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECC--CCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEE
Q 004924 607 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS--TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 684 (723)
Q Consensus 607 ~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 684 (723)
+.... ...+.+++|.+.|.+|++++.|=.|++++-. ++..+..+..+ .+. .+++.|.. ...+++++
T Consensus 427 ~~l~~-~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~--------sg~--st~v~Fg~-~aq~l~s~ 494 (506)
T KOG0289|consen 427 IQLDE-KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH--------SGL--STGVRFGE-HAQYLAST 494 (506)
T ss_pred eeccc-cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc--------ccc--cceeeecc-cceEEeec
Confidence 87643 5589999999999999999888777777744 34444444321 222 34888888 77899999
Q ss_pred ECCCcEEEEec
Q 004924 685 LTNGRVHVIEP 695 (723)
Q Consensus 685 s~Dg~v~iWd~ 695 (723)
|.|..++++.+
T Consensus 495 smd~~l~~~a~ 505 (506)
T KOG0289|consen 495 SMDAILRLYAL 505 (506)
T ss_pred cchhheEEeec
Confidence 99999988764
No 104
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=2.6e-23 Score=217.69 Aligned_cols=377 Identities=14% Similarity=0.132 Sum_probs=264.1
Q ss_pred CCcceeeccCCCC-CCceeeeCCCcccccccCCCCCEEEEEeCCCeEEEEeecccCCCC-----------------cee-
Q 004924 304 EGRPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPS-----------------ECR- 364 (723)
Q Consensus 304 ~~~~~~~~~~h~~-v~s~~~~~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~-----------------~~~- 364 (723)
.-.....+.||.+ |.+..|..... +.-++|++|.|..||||.+.-..+.. .+.
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~--------~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~ 251 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGG--------DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILE 251 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCC--------CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeee
Confidence 3455667789999 98887766532 45679999999999999986421111 000
Q ss_pred E----EecCC--CCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcc---------cccccceeee-----------
Q 004924 365 T----LLLPD--NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ---------SLEEENVNME----------- 418 (723)
Q Consensus 365 ~----~~l~~--~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~---------~~g~~~~~~~----------- 418 (723)
. +.+.. .||.+.|.++.|+|++..|+++|.|.++.+|......- ..|.....+.
T Consensus 252 ~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~i 331 (764)
T KOG1063|consen 252 EIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVI 331 (764)
T ss_pred eEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEE
Confidence 0 01111 47999999999999999999999999999999765421 0111111111
Q ss_pred --------eEEEec-CCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcC--------------------
Q 004924 419 --------SQLYQP-SSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE-------------------- 466 (723)
Q Consensus 419 --------~~~~~~-~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~-------------------- 466 (723)
.++|.. +...........||.+.|.+++|. |++|++.+ |.+-+++-.-
T Consensus 332 i~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~ 411 (764)
T KOG1063|consen 332 IAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLT 411 (764)
T ss_pred EEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccce
Confidence 245552 222223333344899999999999 99999999 8887775321
Q ss_pred -----C-------C---cEE------------------------------------------------------------
Q 004924 467 -----T-------F---QTL------------------------------------------------------------ 471 (723)
Q Consensus 467 -----~-------~---~~~------------------------------------------------------------ 471 (723)
+ | +.+
T Consensus 412 c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et 491 (764)
T KOG1063|consen 412 CLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAET 491 (764)
T ss_pred eeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeec
Confidence 0 0 000
Q ss_pred ---------------------------EEEeCCCCCeEEEEEcCCC-eEEEEECCC-----cEEEEeCCCCcEEEEEcCc
Q 004924 472 ---------------------------ATFANPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKAKLKGH 518 (723)
Q Consensus 472 ---------------------------~~~~~~~~~v~~l~~~p~~-~l~sgs~dg-----~I~iwd~~~~~~~~~l~~~ 518 (723)
+.+.+|...|.+++.+|++ .+|+++... .|++|+..+-..++.+.+|
T Consensus 492 ~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~H 571 (764)
T KOG1063|consen 492 PLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGH 571 (764)
T ss_pred ccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheeccc
Confidence 1223577789999999999 999988654 6999999988888899999
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEE
Q 004924 519 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYE 597 (723)
Q Consensus 519 ~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd 597 (723)
+-.|+.++|+|||++|++++.|+++.+|......... .... ....|. .-|.+..|+|++.++++ +.|.+|.+|.
T Consensus 572 sLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e-~~fa-~~k~Ht---RIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 572 SLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE-FRFA-CLKAHT---RIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred ceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh-hhhc-cccccc---eEEEEcccCcccceeEEecCCceEEEEe
Confidence 9999999999999999999999999999885532111 1111 234565 68899999999999998 6999999999
Q ss_pred CCCC--ceeEEecCCCCCCCeEEEEEee-----CCcEEEEEeCCCcEEEEECCCCcEE-----EEeecccccCCCCccCc
Q 004924 598 APTL--NHTSQLVPDKMDLPITYATYSC-----DGKCIYVSCKSGHVKVFDTSTLELR-----CQINLTAYAQPGTISLE 665 (723)
Q Consensus 598 ~~~~--~~~~~~~~~~h~~~v~~l~~sp-----dg~~l~sgs~dg~I~iwd~~~~~~~-----~~~~~~~~~~~g~~~~~ 665 (723)
.... +.+..+....+...|+.++|.| .+..+++|-+.|.|.+|....-... ..+... ......+...
T Consensus 647 ~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~a 725 (764)
T KOG1063|consen 647 EPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTR-LCATIGPDSA 725 (764)
T ss_pred ccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccc-cccccChHHh
Confidence 9877 5555544445689999999986 2337788999999999996621111 111111 0111223444
Q ss_pred cceEEEEEecCC---------CCEEEEEECCCcEEEEecC
Q 004924 666 LYPLVIAAHPLE---------PNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 666 v~~~~v~~sp~d---------~~~las~s~Dg~v~iWd~~ 696 (723)
|+ .+.|.|.. ...|++|++|.++||+++.
T Consensus 726 V~--rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 726 VN--RLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred hh--eeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 55 89999852 1257999999999999874
No 105
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=4.4e-24 Score=214.14 Aligned_cols=267 Identities=15% Similarity=0.184 Sum_probs=210.2
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccCCCCcee-E----------EecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEE
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLINEPSECR-T----------LLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW 401 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~-~----------~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iW 401 (723)
++||+++..+++.+++|.-|++..++....+. . ...+..+|...+.+++.|+||+|||+|+.|..|.||
T Consensus 150 ls~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw 229 (479)
T KOG0299|consen 150 LSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIW 229 (479)
T ss_pred eeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEe
Confidence 78999999999999999999988643221111 1 111102699999999999999999999999999999
Q ss_pred eccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCC
Q 004924 402 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPP 478 (723)
Q Consensus 402 d~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~ 478 (723)
+.++.+. .. .+ .+|.+.|.+++|- ...+++++ |++|++|+++....+.++.+|.
T Consensus 230 ~~~t~eh-----v~----------------~~--~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHq 286 (479)
T KOG0299|consen 230 DCDTLEH-----VK----------------VF--KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQ 286 (479)
T ss_pred cCcccch-----hh----------------cc--cccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCc
Confidence 9875332 11 11 1799999999999 55688888 9999999999999999999999
Q ss_pred CCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeece
Q 004924 479 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 557 (723)
Q Consensus 479 ~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~ 557 (723)
..|..+....-+ .+.+|+.|+++++|++. .+....+.++.+.+-|++|-.+ ..+++|+.+|.|.+|++... +
T Consensus 287 d~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KK-----k 359 (479)
T KOG0299|consen 287 DGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKK-----K 359 (479)
T ss_pred cceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeeccc-----C
Confidence 999999888777 77777799999999994 4455678889999999999754 58999999999999999874 3
Q ss_pred eeeeeecCCCCC--------CCCeEEEEEccCCCEEEEE-cCCcEEEEECCCC----ceeEEecCCCCCCCeEEEEEeeC
Q 004924 558 FLHSFQTGLVPE--------TTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL----NHTSQLVPDKMDLPITYATYSCD 624 (723)
Q Consensus 558 ~l~~~~~~~~~~--------~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~----~~~~~~~~~~h~~~v~~l~~spd 624 (723)
++.+....|.-. ..+|++++..|...++++| .+|.|++|-+..+ +++..+. -.+.|++++|+++
T Consensus 360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls---~~GfVNsl~f~~s 436 (479)
T KOG0299|consen 360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS---LVGFVNSLAFSNS 436 (479)
T ss_pred ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc---cccEEEEEEEccC
Confidence 333322222210 1389999999999999994 8999999999877 3444443 3788999999999
Q ss_pred CcEEEEEe
Q 004924 625 GKCIYVSC 632 (723)
Q Consensus 625 g~~l~sgs 632 (723)
|+++++|.
T Consensus 437 gk~ivagi 444 (479)
T KOG0299|consen 437 GKRIVAGI 444 (479)
T ss_pred CCEEEEec
Confidence 99777763
No 106
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.3e-24 Score=202.82 Aligned_cols=287 Identities=14% Similarity=0.138 Sum_probs=230.8
Q ss_pred CCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--C
Q 004924 372 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 449 (723)
Q Consensus 372 ~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~ 449 (723)
||.+.||.++-......+.+++.|.+.+||.++++.+ +..+. ||.+.|++++|+ +
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C---------------------L~~Y~--GH~GSVNsikfh~s~ 202 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC---------------------LATYT--GHTGSVNSIKFHNSG 202 (481)
T ss_pred ccccceeeehhhcCCcceeecccccceeEEeeccccc---------------------eeeec--ccccceeeEEecccc
Confidence 4999999999988888999999999999998775433 22222 899999999999 7
Q ss_pred CEEEEEe-CCcEEEEEc------CC------------------------------C----cEEEEEeCCCCCeEEEEEcC
Q 004924 450 SHLFSAS-GGKISIFSL------ET------------------------------F----QTLATFANPPPIATYFILLP 488 (723)
Q Consensus 450 ~~l~s~s-dg~I~vwd~------~~------------------------------~----~~~~~~~~~~~~v~~l~~~p 488 (723)
.++++++ |++-.||.. .. + .++..+.+|...|.+..|..
T Consensus 203 ~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~ 282 (481)
T KOG0300|consen 203 LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA 282 (481)
T ss_pred ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc
Confidence 7888888 999999962 10 0 12345678999999999999
Q ss_pred CC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCC
Q 004924 489 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 567 (723)
Q Consensus 489 ~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~ 567 (723)
.| .+++++.|.+..+||+++|+++..+.||....+.++-+|..+.+++++.|.+.++||.+.. + ..+. .+.+|.
T Consensus 283 gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea--I--~sV~-VFQGHt 357 (481)
T KOG0300|consen 283 GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA--I--QSVA-VFQGHT 357 (481)
T ss_pred CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh--c--ceee-eecccc
Confidence 89 9999999999999999999999999999999999999999999999999999999999852 1 2223 567888
Q ss_pred CCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCc-eeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCc
Q 004924 568 PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 646 (723)
Q Consensus 568 ~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~-~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~ 646 (723)
..|+++.|..+.+.+..+.|.+|+|||+++.+ ++.++.. ..++..++.+..++.++.--.+..|++||+...+
T Consensus 358 ---dtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRt---dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 358 ---DTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRT---DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred ---cceeEEEEecCCceeecCCCceEEEeeeccccCcceeeec---CCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 89999999988766555788999999998754 5666654 7889999999988899999889999999998654
Q ss_pred EEEEeecccccCCCCccCccceEEEEEecCCC--CEEEEEECCCcEEEEecCCCc
Q 004924 647 LRCQINLTAYAQPGTISLELYPLVIAAHPLEP--NRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 647 ~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~--~~las~s~Dg~v~iWd~~~~~ 699 (723)
+..+... ...||. --++|++|.. +. .-|++||-|..+.=|++..+.
T Consensus 432 -laRlPrt--sRqgHr---RMV~c~AW~e-ehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 432 -LARLPRT--SRQGHR---RMVTCCAWLE-EHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred -cccCCcc--cccccc---eeeeeeeccc-cCcccccccccccceeeeeEecccC
Confidence 3444311 112332 2356999975 32 348899999999999987653
No 107
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.3e-24 Score=203.94 Aligned_cols=289 Identities=15% Similarity=0.180 Sum_probs=222.4
Q ss_pred EEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEec------cCCcccccc
Q 004924 339 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW------QSNKQSLEE 412 (723)
Q Consensus 339 ~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~------~~~~~~~g~ 412 (723)
.+.+++.|.+.+||.++ .+.|... +.| |.+.|++++|++.|..+++++.|++..||.. .....+.+.
T Consensus 162 i~gtASADhTA~iWs~E----sg~CL~~-Y~G--H~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~h 234 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLE----SGACLAT-YTG--HTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDH 234 (481)
T ss_pred ceeecccccceeEEeec----cccceee-ecc--cccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCC
Confidence 57889999999999999 5777644 444 9999999999999999999999999999982 221111111
Q ss_pred cce---eee---eEEEe---cCCCeee--eeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCC
Q 004924 413 ENV---NME---SQLYQ---PSSKLVM--TNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPP 478 (723)
Q Consensus 413 ~~~---~~~---~~~~~---~~~~~~~--~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~ 478 (723)
... ..+ .+.-| ...+-.+ ......+|.+.|.+..|- |+.+++++ |.+..+||+++|+.+..+.+|.
T Consensus 235 SsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd 314 (481)
T KOG0300|consen 235 SSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHD 314 (481)
T ss_pred CchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcc
Confidence 100 000 00000 0011111 111223799999999998 88999999 9999999999999999999999
Q ss_pred CCeEEEEEcCCC-eEEEEECCCcEEEEeCCCC-cEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeec
Q 004924 479 PIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 556 (723)
Q Consensus 479 ~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~-~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~ 556 (723)
...+.++-+|.. ++++++.|.+.++||.+.. ..+..|+||...|+++.|..+. .+++|+.|.+|++||+++. .
T Consensus 315 ~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNM----R 389 (481)
T KOG0300|consen 315 SELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNM----R 389 (481)
T ss_pred hhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccc----c
Confidence 999999999999 9999999999999998853 4567899999999999999764 6899999999999999984 2
Q ss_pred eeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEec---CCCCCCCeEEEEEeeCC--cEEEE
Q 004924 557 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLV---PDKMDLPITYATYSCDG--KCIYV 630 (723)
Q Consensus 557 ~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~---~~~h~~~v~~l~~spdg--~~l~s 630 (723)
.++.++... .+++.++.+..+..|+.- .+..|++||+. |..+..+. ..+|...|++++|..+. .-|++
T Consensus 390 splATIRtd-----S~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLft 463 (481)
T KOG0300|consen 390 SPLATIRTD-----SPANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFT 463 (481)
T ss_pred CcceeeecC-----CccceeEeecCCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCccccccc
Confidence 455555444 689999999988888885 66789999995 44333332 23578899999998543 45788
Q ss_pred EeCCCcEEEEECCCC
Q 004924 631 SCKSGHVKVFDTSTL 645 (723)
Q Consensus 631 gs~dg~I~iwd~~~~ 645 (723)
++.|..+.=|.+...
T Consensus 464 cGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 464 CGFDRMVAGWKINTP 478 (481)
T ss_pred ccccceeeeeEeccc
Confidence 899999999988654
No 108
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.7e-23 Score=198.97 Aligned_cols=306 Identities=16% Similarity=0.151 Sum_probs=222.1
Q ss_pred eeccCCCC-CCceeeeCCCcccccccCCCCCEEEEEeCCCeEEEEeeccc-CCCCceeEEecCCCCCCCceEEEEEeCCC
Q 004924 309 DASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLI-NEPSECRTLLLPDNSFGGRVVRLIYSHSG 386 (723)
Q Consensus 309 ~~~~~h~~-v~s~~~~~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~-~~~~~~~~~~l~~~~h~~~V~~l~fspdg 386 (723)
.+++||.+ |..++ |+.||+++|+++.|++|++|++.+- .....|.+..++ .+..+.+.|+||-
T Consensus 80 ~~LKgH~~~vt~~~-----------FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve----~dhpT~V~FapDc 144 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVA-----------FSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE----YDHPTRVVFAPDC 144 (420)
T ss_pred hhhhccCCceeeeE-----------EcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc----CCCceEEEECCCc
Confidence 44567777 44433 7778999999999999999998741 112344444444 3466889999998
Q ss_pred CEEEE-EECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEE
Q 004924 387 DFLVA-LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISI 462 (723)
Q Consensus 387 ~~las-~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~v 462 (723)
+-++. +-...++++|....... |.....+ .-||.. . +...|.-.+..+... +.+|++++ |..|.+
T Consensus 145 ~s~vv~~~~g~~l~vyk~~K~~d--G~~~~~~--v~~D~~--~-----f~~kh~v~~i~iGiA~~~k~imsas~dt~i~l 213 (420)
T KOG2096|consen 145 KSVVVSVKRGNKLCVYKLVKKTD--GSGSHHF--VHIDNL--E-----FERKHQVDIINIGIAGNAKYIMSASLDTKICL 213 (420)
T ss_pred ceEEEEEccCCEEEEEEeeeccc--CCCCccc--cccccc--c-----cchhcccceEEEeecCCceEEEEecCCCcEEE
Confidence 75554 44456899998764332 3222111 113310 0 111477777777766 77999999 999999
Q ss_pred EEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCC---CC-----cEEEEEcCcCCcEEEEEEcCCCCE
Q 004924 463 FSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC---TK-----KTKAKLKGHQNRITCLAYSLSLNV 533 (723)
Q Consensus 463 wd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~---~~-----~~~~~l~~~~~~i~~l~~spdg~~ 533 (723)
|+++ |+.+..+......-+..+.+|+| ++++++..-.|++|.+- .| ..+..++||++.|..++|+++...
T Consensus 214 w~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r 292 (420)
T KOG2096|consen 214 WDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTR 292 (420)
T ss_pred EecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcce
Confidence 9998 99999988776677788999999 99999999999999852 23 234568999999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCceee--ceeeeee--ecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecC
Q 004924 534 LVSSGADAQLCVWDAVGWKKLC--SKFLHSF--QTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP 609 (723)
Q Consensus 534 l~s~s~dg~I~vwd~~~~~~~~--~~~l~~~--~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~ 609 (723)
+++.+.||++++||++-.-... .+.+.+. +.... .+....++++|+|+.|+.+....+++|..++|+...++..
T Consensus 293 ~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aa--g~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~ 370 (420)
T KOG2096|consen 293 AVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAA--GSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELED 370 (420)
T ss_pred eEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhc--CCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHH
Confidence 9999999999999986421100 0111111 11101 1344589999999999999889999999999987766654
Q ss_pred CCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCC
Q 004924 610 DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 645 (723)
Q Consensus 610 ~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~ 645 (723)
.|...|.+++|+++|+++++++ |..++++.-..|
T Consensus 371 -~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 371 -IHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred -hhcCceeeEEecCCCcEEeeec-ceeeeeecCCCc
Confidence 5799999999999999999987 678888764433
No 109
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=4.4e-24 Score=215.20 Aligned_cols=279 Identities=15% Similarity=0.181 Sum_probs=221.6
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 450 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 450 (723)
|..-|..+..|...++++||+. |.|+|||+..... . ..+.-.| ++ .....|.++... |+
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~----k---~PvsqLd-----cl------~rdnyiRSckL~pdgr 478 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN----K---SPVSQLD-----CL------NRDNYIRSCKLLPDGR 478 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC----C---Ccccccc-----cc------CcccceeeeEecCCCc
Confidence 7888999999999999999886 8999999874211 0 0000011 11 234556666666 88
Q ss_pred EEEEEe-CCcEEEEEcCCCcE--EEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEE
Q 004924 451 HLFSAS-GGKISIFSLETFQT--LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 526 (723)
Q Consensus 451 ~l~s~s-dg~I~vwd~~~~~~--~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~ 526 (723)
.|++|+ ..++.|||+..... ...+......+.+++.+||. ..++++.||.|.|||+.+...++.|+||...+.||.
T Consensus 479 tLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascId 558 (705)
T KOG0639|consen 479 TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 558 (705)
T ss_pred eEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEE
Confidence 999999 78999999976443 23344445567889999999 888889999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeE
Q 004924 527 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS 605 (723)
Q Consensus 527 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~ 605 (723)
.++||..|-+|+-|.+||.||++.+.......+. ..|.++..+|++.++++| .++.+.|......+
T Consensus 559 is~dGtklWTGGlDntvRcWDlregrqlqqhdF~----------SQIfSLg~cP~~dWlavGMens~vevlh~skp~--- 625 (705)
T KOG0639|consen 559 ISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS----------SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE--- 625 (705)
T ss_pred ecCCCceeecCCCccceeehhhhhhhhhhhhhhh----------hhheecccCCCccceeeecccCcEEEEecCCcc---
Confidence 9999999999999999999999997543322222 689999999999999998 77788888774333
Q ss_pred EecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEE
Q 004924 606 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 685 (723)
Q Consensus 606 ~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 685 (723)
.+..+.|...|.++.|.+.|+++++.+.|+.+..|....|..+....- ... |+++..+- |.++++|||
T Consensus 626 kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---------~Ss--VlsCDIS~-ddkyIVTGS 693 (705)
T KOG0639|consen 626 KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---------SSS--VLSCDISF-DDKYIVTGS 693 (705)
T ss_pred ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc---------cCc--ceeeeecc-CceEEEecC
Confidence 233345799999999999999999999999999999999987665532 333 45888888 789999999
Q ss_pred CCCcEEEEec
Q 004924 686 TNGRVHVIEP 695 (723)
Q Consensus 686 ~Dg~v~iWd~ 695 (723)
.|..-.||.+
T Consensus 694 GdkkATVYeV 703 (705)
T KOG0639|consen 694 GDKKATVYEV 703 (705)
T ss_pred CCcceEEEEE
Confidence 9998888875
No 110
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=3.5e-22 Score=213.34 Aligned_cols=329 Identities=12% Similarity=0.123 Sum_probs=251.6
Q ss_pred CEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceee
Q 004924 338 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM 417 (723)
Q Consensus 338 ~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~ 417 (723)
+.++.|+.+|.+.+|++.. ++... ++++ +.+.|+++.=+|-=..+|.|..+|+|.++++.. ++...++
T Consensus 173 NKIvvGs~~G~lql~Nvrt----~K~v~-~f~~--~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~-----dkil~sF 240 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRT----GKVVY-TFQE--FFSRITAIEQSPALDVVAIGLENGTVIIFNLKF-----DKILMSF 240 (910)
T ss_pred eeEEEeecCCcEEEEEecc----CcEEE-Eecc--cccceeEeccCCcceEEEEeccCceEEEEEccc-----CcEEEEE
Confidence 4589999999999999984 44333 3555 889999999999999999999999999999873 3333333
Q ss_pred eeEEEecCCCeeeeeccCCCC-CCCeEEEEEe--CC-EEEEEe-CCcEEEEEcCCCcEEEEEe-CCCCCeEEEEEcCCC-
Q 004924 418 ESQLYQPSSKLVMTNDIAADP-KDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD- 490 (723)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~s--~~-~l~s~s-dg~I~vwd~~~~~~~~~~~-~~~~~v~~l~~~p~~- 490 (723)
.| .+.|++++|. |. .+++|+ .|.+.+||++..+.+..+. .|.+.++...|.|..
T Consensus 241 -------------------k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep 301 (910)
T KOG1539|consen 241 -------------------KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP 301 (910)
T ss_pred -------------------EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc
Confidence 25 4899999999 55 566666 7999999999888877776 888999999999988
Q ss_pred eEEEEECCCcEEEEeCCC--C--cEEEEEcCcCCcEEEEEEc-CCCCEEEEEeCCCcEEEEeCCCCce------------
Q 004924 491 LFAFGFDDSSILVHCPCT--K--KTKAKLKGHQNRITCLAYS-LSLNVLVSSGADAQLCVWDAVGWKK------------ 553 (723)
Q Consensus 491 ~l~sgs~dg~I~iwd~~~--~--~~~~~l~~~~~~i~~l~~s-pdg~~l~s~s~dg~I~vwd~~~~~~------------ 553 (723)
.+++++.|+.+++|=.++ | +.++.-.||..+..|+.|. .+|..+.+++.|++++.+++.....
T Consensus 302 Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~ 381 (910)
T KOG1539|consen 302 VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKR 381 (910)
T ss_pred eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccc
Confidence 999999999888875544 3 3455567899999999997 6788899999998888776532100
Q ss_pred ---eec--------eeeeee-------------ecCCC--------------------------CCCCCeEEEEEccCCC
Q 004924 554 ---LCS--------KFLHSF-------------QTGLV--------------------------PETTIVNHIQFHPDQI 583 (723)
Q Consensus 554 ---~~~--------~~l~~~-------------~~~~~--------------------------~~~~~v~~l~~spdg~ 583 (723)
... .++..+ ...|. +....+++++.++.|+
T Consensus 382 ~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN 461 (910)
T KOG1539|consen 382 AKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN 461 (910)
T ss_pred cccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc
Confidence 000 000000 00000 0125688999999999
Q ss_pred EEEEE-cCCcEEEEECCCCceeEEec-CCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeeccccc----
Q 004924 584 HLLSI-HEGQIDVYEAPTLNHTSQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA---- 657 (723)
Q Consensus 584 ~l~~s-~dg~I~vwd~~~~~~~~~~~-~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~---- 657 (723)
+.+.| +.|.|-+|++.+|-....|. ...|..+|++++...-++.+++++.+|.+.+||.....++..+......
T Consensus 462 F~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv 541 (910)
T KOG1539|consen 462 FVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIV 541 (910)
T ss_pred eEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceee
Confidence 98886 88999999999998888873 3368999999999988999999999999999999987755444321100
Q ss_pred ------------------------------CCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCcee
Q 004924 658 ------------------------------QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 701 (723)
Q Consensus 658 ------------------------------~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~ 701 (723)
-.|| ++.+ ++++||| ||++|++++.|++|++||+.++...
T Consensus 542 ~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh-~nri--td~~FS~-DgrWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 542 YHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH-GNRI--TDMTFSP-DGRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred eeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc-ccce--eeeEeCC-CCcEEEEeecCCcEEEEeccCccee
Confidence 1233 4444 4999999 9999999999999999999998754
No 111
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=4.4e-23 Score=195.51 Aligned_cols=298 Identities=16% Similarity=0.171 Sum_probs=219.1
Q ss_pred CCCceEEEEEeC-CCCEEEEEECCCcEEEEeccCCcc-cccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--
Q 004924 373 FGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQ-SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 448 (723)
Q Consensus 373 h~~~V~~l~fsp-dg~~las~s~dg~i~iWd~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-- 448 (723)
|.+.|+.+...+ .|+|+++|+.||.|.+||++.... ....... +....+......+|.-.|.++.|-
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~---------k~~c~v~~~h~~~Hky~iss~~WyP~ 112 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIA---------KHKCIVAKQHENGHKYAISSAIWYPI 112 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcccee---------heeeeccccCCccceeeeeeeEEeee
Confidence 899999999988 689999999999999999986432 0000000 001111111122688999999998
Q ss_pred -CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC----eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcE
Q 004924 449 -GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD----LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 522 (723)
Q Consensus 449 -~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~----~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i 522 (723)
...+.+++ |.+++|||..+-+....|.- .+.|.+-+|+|-. ++|+|..|-.|++.|+.+|...+.+.||...|
T Consensus 113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~v 191 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGV 191 (397)
T ss_pred cCceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCce
Confidence 56777788 99999999999888777753 4567778888754 78889999999999999999999999999999
Q ss_pred EEEEEcCCCCE-EEEEeCCCcEEEEeCCCCc-ee--------eceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCC
Q 004924 523 TCLAYSLSLNV-LVSSGADAQLCVWDAVGWK-KL--------CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG 591 (723)
Q Consensus 523 ~~l~~spdg~~-l~s~s~dg~I~vwd~~~~~-~~--------~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg 591 (723)
.++.|+|...+ |++|+.||.|++||++... +. ...++......|. +.+..++|+.+|.++++ +.|.
T Consensus 192 laV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~---gkvngla~tSd~~~l~~~gtd~ 268 (397)
T KOG4283|consen 192 LAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHY---GKVNGLAWTSDARYLASCGTDD 268 (397)
T ss_pred EEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccc---ceeeeeeecccchhhhhccCcc
Confidence 99999997765 7899999999999998531 00 0011111223444 78999999999999998 6999
Q ss_pred cEEEEECCCCceeEE-ecCCCCC---CCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccc
Q 004924 592 QIDVYEAPTLNHTSQ-LVPDKMD---LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELY 667 (723)
Q Consensus 592 ~I~vwd~~~~~~~~~-~~~~~h~---~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~ 667 (723)
.+++|+..+|+.... +-+..|. ..-..+. +.+...++---.++.+.++++-.|..+..+..| ...
T Consensus 269 r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h--------~k~-- 337 (397)
T KOG4283|consen 269 RIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH--------LKR-- 337 (397)
T ss_pred ceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecc--------cce--
Confidence 999999988764221 1111111 1111122 334444554455699999999999999888743 333
Q ss_pred eEEEEEecCCCCEEEEEECCCcEEEEec
Q 004924 668 PLVIAAHPLEPNRIALGLTNGRVHVIEP 695 (723)
Q Consensus 668 ~~~v~~sp~d~~~las~s~Dg~v~iWd~ 695 (723)
+.|.++.| +-+...+++.|+.+..|-+
T Consensus 338 i~c~~~~~-~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 338 INCAAYRP-DFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eeEEeecC-chhhhhccccCCccccccc
Confidence 44888988 7788999999999999988
No 112
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.8e-22 Score=192.20 Aligned_cols=236 Identities=15% Similarity=0.210 Sum_probs=188.9
Q ss_pred CCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-C
Q 004924 371 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G 449 (723)
Q Consensus 371 ~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~ 449 (723)
+.|.+.|++++. +|+|+|+||.|-+|+|||+..... .|.++ .|.+.|+++.|. .
T Consensus 40 ~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~q-----------------lg~ll------~HagsitaL~F~~~ 94 (362)
T KOG0294|consen 40 SAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQ-----------------LGILL------SHAGSITALKFYPP 94 (362)
T ss_pred cccccceeEEEe--cceeEeccCCCCcEEEEeccchhh-----------------hccee------ccccceEEEEecCC
Confidence 349999999998 488999999999999999885322 22222 499999999999 2
Q ss_pred ---CEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEE
Q 004924 450 ---SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 524 (723)
Q Consensus 450 ---~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~ 524 (723)
..|++|+ ||.|.+|+.....++..+++|.+.|+.++.+|.+ .-++.+.|+.++.||+-.|+.-..++- ...-+.
T Consensus 95 ~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~ 173 (362)
T KOG0294|consen 95 LSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATL 173 (362)
T ss_pred cchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCccee
Confidence 3789999 9999999999999999999999999999999999 777888999999999998876655542 223345
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCcee
Q 004924 525 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHT 604 (723)
Q Consensus 525 l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~ 604 (723)
+.|+|.|.+++.++.+ .|-+|.+.+... +..+... ..+.++.|...+..++.+.|+.|.+||..+..+.
T Consensus 174 v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v-----~~~i~~~-----~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~ 242 (362)
T KOG0294|consen 174 VSWSPQGDHFVVSGRN-KIDIYQLDNASV-----FREIENP-----KRILCATFLDGSELLVGGDNEWISLKDTDSDTPL 242 (362)
T ss_pred eEEcCCCCEEEEEecc-EEEEEecccHhH-----hhhhhcc-----ccceeeeecCCceEEEecCCceEEEeccCCCccc
Confidence 9999999998888765 577898877321 2211111 3577777776554444468899999999988887
Q ss_pred EEecCCCCCCCeEEEEE--eeCCcEEEEEeCCCcEEEEECCCC
Q 004924 605 SQLVPDKMDLPITYATY--SCDGKCIYVSCKSGHVKVFDTSTL 645 (723)
Q Consensus 605 ~~~~~~~h~~~v~~l~~--spdg~~l~sgs~dg~I~iwd~~~~ 645 (723)
..+. +|...|-++.+ .|++.+|+++|.||.|++||++..
T Consensus 243 ~~~~--AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 243 TEFL--AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeee--cchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 7776 57899999885 367899999999999999999876
No 113
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.5e-22 Score=193.82 Aligned_cols=268 Identities=13% Similarity=0.122 Sum_probs=206.8
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCE
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 451 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~ 451 (723)
-.+.|..+.|+|.+..|+.++.||++++|++..... ...+ .|..++.+++|. ...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l-----~~~~-------------------~~~~plL~c~F~d~~~ 67 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL-----KLKF-------------------KHGAPLLDCAFADEST 67 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh-----hhhe-------------------ecCCceeeeeccCCce
Confidence 368999999999999999999999999999874321 1111 489999999999 788
Q ss_pred EEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcC
Q 004924 452 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL 529 (723)
Q Consensus 452 l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~sp 529 (723)
+++|+ ||.|+.+|+.++... .+..|..++.|+..++-. .+++|+.|++|++||.+.......+. ....|.++...
T Consensus 68 ~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~- 144 (323)
T KOG1036|consen 68 IVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS- 144 (323)
T ss_pred EEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc-
Confidence 99999 999999999887653 455789999999999877 99999999999999998755555554 33478777664
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEE-EEcCCcEEEEECCCC----cee
Q 004924 530 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL-SIHEGQIDVYEAPTL----NHT 604 (723)
Q Consensus 530 dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~-~s~dg~I~vwd~~~~----~~~ 604 (723)
|+.|++|+.|..+.+||+++.. .+.+.-...-. ..+.++++-|++.-.+ ++-||+|.+=.+... ...
T Consensus 145 -g~~LvVg~~~r~v~iyDLRn~~----~~~q~reS~lk---yqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skk 216 (323)
T KOG1036|consen 145 -GNRLVVGTSDRKVLIYDLRNLD----EPFQRRESSLK---YQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKK 216 (323)
T ss_pred -CCEEEEeecCceEEEEEccccc----chhhhccccce---eEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhc
Confidence 6789999999999999999843 22221111111 6789999999775555 479999988666544 222
Q ss_pred EEecCCC-------CCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCC
Q 004924 605 SQLVPDK-------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 677 (723)
Q Consensus 605 ~~~~~~~-------h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d 677 (723)
..|+.+. ...+|.+++|+|-...+|+|+.||.|.+||..+.+.+..+.. ....+..++|+. +
T Consensus 217 yaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~----------~~~SI~slsfs~-d 285 (323)
T KOG1036|consen 217 YAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK----------YETSISSLSFSM-D 285 (323)
T ss_pred eeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC----------CCCceEEEEecc-C
Confidence 2333211 135799999999999999999999999999999988887742 123355999999 8
Q ss_pred CCEEEEEEC
Q 004924 678 PNRIALGLT 686 (723)
Q Consensus 678 ~~~las~s~ 686 (723)
|..||+++.
T Consensus 286 G~~LAia~s 294 (323)
T KOG1036|consen 286 GSLLAIASS 294 (323)
T ss_pred CCeEEEEec
Confidence 999999874
No 114
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=2.4e-21 Score=202.16 Aligned_cols=277 Identities=16% Similarity=0.136 Sum_probs=196.9
Q ss_pred CEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEE-EEEECCCcEEEEeccCCccccccccee
Q 004924 338 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQSLEEENVN 416 (723)
Q Consensus 338 ~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~l-as~s~dg~i~iWd~~~~~~~~g~~~~~ 416 (723)
..+++++.|+.+.+||+.+ +.+... +. +...+.+++|+|+|+.+ ++++.++.|++||..++..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t----~~~~~~-~~---~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-------- 65 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTAT----LEVTRT-FP---VGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-------- 65 (300)
T ss_pred cEEEEecCCCEEEEEECCC----CceEEE-EE---CCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE--------
Confidence 4688999999999999874 333332 33 23447789999999977 5566789999999764221
Q ss_pred eeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEE-e-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-e
Q 004924 417 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA-S-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-L 491 (723)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~-s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~ 491 (723)
..... .+ ..+..++|+ ++.++++ + ++.+++||+.+++.+..+..+ ..+.+++|+|++ .
T Consensus 66 -------------~~~~~--~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~ 128 (300)
T TIGR03866 66 -------------IGTLP--SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKI 128 (300)
T ss_pred -------------EEecc--CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCE
Confidence 11111 12 224567787 6666554 4 799999999988877777532 346789999999 8
Q ss_pred EEEEECCC-cEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCceeeceeeeeeecCCCCC
Q 004924 492 FAFGFDDS-SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 569 (723)
Q Consensus 492 l~sgs~dg-~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~-s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~ 569 (723)
+++++.++ .+.+||..+++....... ...+.++.|+|+|+.++++ ..++.|++||+.+++........ ....+. .
T Consensus 129 l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~-~~~~~~-~ 205 (300)
T TIGR03866 129 VVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE-IPGVHP-E 205 (300)
T ss_pred EEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec-cccccc-c
Confidence 88887765 577889988877665432 3345789999999988654 46899999999986543322111 001010 0
Q ss_pred CCCeEEEEEccCCCEEEE--EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEE-eCCCcEEEEECCCCc
Q 004924 570 TTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTLE 646 (723)
Q Consensus 570 ~~~v~~l~~spdg~~l~~--s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sg-s~dg~I~iwd~~~~~ 646 (723)
......++|+|+++++++ +.++.+.+||+.+++....+. +...+.+++|+|+|++|+++ +.+|.|.+||+.+++
T Consensus 206 ~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 206 AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL---VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE---eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 023457889999998665 356789999999888776553 24578899999999999886 468999999999999
Q ss_pred EEEEeec
Q 004924 647 LRCQINL 653 (723)
Q Consensus 647 ~~~~~~~ 653 (723)
.+..+..
T Consensus 283 ~~~~~~~ 289 (300)
T TIGR03866 283 VIKSIKV 289 (300)
T ss_pred EEEEEEc
Confidence 9888863
No 115
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.5e-23 Score=193.99 Aligned_cols=245 Identities=16% Similarity=0.192 Sum_probs=193.9
Q ss_pred CCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---
Q 004924 372 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 448 (723)
Q Consensus 372 ~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--- 448 (723)
.|.+.|..+...--|+.||||++|++|+|+.+.... . ..++..+. +|.++|+.++|.
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~----~--------------s~ll~~L~--Gh~GPVwqv~wahPk 68 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG----Q--------------SKLLAELT--GHSGPVWKVAWAHPK 68 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC----C--------------ceeeeEec--CCCCCeeEEeecccc
Confidence 389999998888889999999999999999987421 1 01222222 899999999998
Q ss_pred -CCEEEEEe-CCcEEEEEcCCCcEE--EEEeCCCCCeEEEEEcCCC---eEEEEECCCcEEEEeCCCC---cEEEEEcCc
Q 004924 449 -GSHLFSAS-GGKISIFSLETFQTL--ATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTK---KTKAKLKGH 518 (723)
Q Consensus 449 -~~~l~s~s-dg~I~vwd~~~~~~~--~~~~~~~~~v~~l~~~p~~---~l~sgs~dg~I~iwd~~~~---~~~~~l~~~ 518 (723)
|.+||+++ ||.|.||.-.+|+-. .....|...|++++|.|.+ .|++++.||.|.|.+.++. ...+....|
T Consensus 69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH 148 (299)
T KOG1332|consen 69 FGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH 148 (299)
T ss_pred cCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc
Confidence 99999999 999999998877543 3445899999999999987 8999999999999987753 223445679
Q ss_pred CCcEEEEEEcCC---C-----------CEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCC--
Q 004924 519 QNRITCLAYSLS---L-----------NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-- 582 (723)
Q Consensus 519 ~~~i~~l~~spd---g-----------~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg-- 582 (723)
.-.|++++|.|. | +.|++|+.|..|+||+..+++ ..+.....+|. +.|+.++|.|.-
T Consensus 149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~----w~~e~~l~~H~---dwVRDVAwaP~~gl 221 (299)
T KOG1332|consen 149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS----WKLERTLEGHK---DWVRDVAWAPSVGL 221 (299)
T ss_pred ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc----hhhhhhhhhcc---hhhhhhhhccccCC
Confidence 999999999985 4 569999999999999998862 22333456787 899999999974
Q ss_pred --CEEEE-EcCCcEEEEECCCC--ceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCC
Q 004924 583 --IHLLS-IHEGQIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 644 (723)
Q Consensus 583 --~~l~~-s~dg~I~vwd~~~~--~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~ 644 (723)
.+|++ +.||++.||..+.. .-..++. +.....+.++.||+.|+.|++++.|+.|.+|.-..
T Consensus 222 ~~s~iAS~SqDg~viIwt~~~e~e~wk~tll-~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 222 PKSTIASCSQDGTVIIWTKDEEYEPWKKTLL-EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred CceeeEEecCCCcEEEEEecCccCccccccc-ccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 56777 59999999987621 1111111 12367799999999999999999999999997553
No 116
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2e-23 Score=193.13 Aligned_cols=254 Identities=12% Similarity=0.120 Sum_probs=198.1
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCC---cEEEEEeCCCCCeEEEEEcC--CC-eEEEEECCCcEEEEeCC
Q 004924 437 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETF---QTLATFANPPPIATYFILLP--QD-LFAFGFDDSSILVHCPC 507 (723)
Q Consensus 437 ~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~---~~~~~~~~~~~~v~~l~~~p--~~-~l~sgs~dg~I~iwd~~ 507 (723)
.|.+.|..+... |..||+|+ |++|+|+.++.. +.+.++.+|.++|+.++|.. -| .||+++.||.|.||.-.
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~ 88 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE 88 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence 588888887766 99999999 999999999764 46788899999999999965 56 99999999999999987
Q ss_pred CCcE--EEEEcCcCCcEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccC--
Q 004924 508 TKKT--KAKLKGHQNRITCLAYSLSL--NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-- 581 (723)
Q Consensus 508 ~~~~--~~~l~~~~~~i~~l~~spdg--~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spd-- 581 (723)
+|+- ......|...|++++|.|.+ -.|++++.||.|.|.+.++.. ......+...|. -.|++++|.|.
T Consensus 89 ~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g---~w~t~ki~~aH~---~GvnsVswapa~~ 162 (299)
T KOG1332|consen 89 NGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG---GWTTSKIVFAHE---IGVNSVSWAPASA 162 (299)
T ss_pred CCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC---Cccchhhhhccc---cccceeeecCcCC
Confidence 7743 34566799999999999964 579999999999999887631 122233556676 68999999986
Q ss_pred -C-----------CEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCC----cEEEEEeCCCcEEEEECCC
Q 004924 582 -Q-----------IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG----KCIYVSCKSGHVKVFDTST 644 (723)
Q Consensus 582 -g-----------~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg----~~l~sgs~dg~I~iwd~~~ 644 (723)
| +.|++ |.|..|+||+..+++-+..-...+|...|..++|.|.- .+|++++.||++.||....
T Consensus 163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred CccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 4 45787 69999999999887543333234689999999999964 5899999999999998763
Q ss_pred CcEEEEeec-ccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCceeeecCC
Q 004924 645 LELRCQINL-TAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLP 706 (723)
Q Consensus 645 ~~~~~~~~~-~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~w~~~~ 706 (723)
.......+. +.+ ...++ .+.||+ .|+.|+.++.|+.|.+|.- +.+.+|...+
T Consensus 243 e~e~wk~tll~~f------~~~~w--~vSWS~-sGn~LaVs~GdNkvtlwke-~~~Gkw~~v~ 295 (299)
T KOG1332|consen 243 EYEPWKKTLLEEF------PDVVW--RVSWSL-SGNILAVSGGDNKVTLWKE-NVDGKWEEVG 295 (299)
T ss_pred ccCcccccccccC------CcceE--EEEEec-cccEEEEecCCcEEEEEEe-CCCCcEEEcc
Confidence 211111111 100 33456 999999 8999999999999999997 4456787654
No 117
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=1.3e-22 Score=212.78 Aligned_cols=261 Identities=15% Similarity=0.174 Sum_probs=208.0
Q ss_pred CCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEE-EEEeC-CCCEEEEEECCCcEEEEeccCCccccccc
Q 004924 336 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVR-LIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEE 413 (723)
Q Consensus 336 dg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~-l~fsp-dg~~las~s~dg~i~iWd~~~~~~~~g~~ 413 (723)
++..++++|.||++++|+-.+ .+......+.+ |.+-|.+ ++|-+ ++-.+++|+.|++|.+|...+..
T Consensus 24 ~~~~i~s~sRd~t~~vw~~~~---~~~l~~~~~~~--~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~------ 92 (745)
T KOG0301|consen 24 DGVCIISGSRDGTVKVWAKKG---KQYLETHAFEG--PKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE------ 92 (745)
T ss_pred CCeEEeecCCCCceeeeeccC---cccccceeccc--CcceeeccceeccccCcceEeecccceEEEEecCCCC------
Confidence 344688999999999999864 23333233444 7777777 77775 44458999999999999865321
Q ss_pred ceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCe
Q 004924 414 NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDL 491 (723)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~ 491 (723)
....+. +|+..|.|++.. ...+++|+ |.++++|-. +++...+.+|...|++++.-|.+.
T Consensus 93 ---------------P~~~Lk--gH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~ 153 (745)
T KOG0301|consen 93 ---------------PLYTLK--GHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPENT 153 (745)
T ss_pred ---------------chhhhh--ccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecCCCc
Confidence 111122 799999999977 55599999 999999985 566777999999999999999889
Q ss_pred EEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCC
Q 004924 492 FAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 571 (723)
Q Consensus 492 l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~ 571 (723)
+++||.|++|++|.- ++.+++|.+|...|+.+++-+++ .+++++.||.|++|++.+ ..+. -..+|. .
T Consensus 154 ~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g------e~l~-~~~ght---n 220 (745)
T KOG0301|consen 154 YVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG------EVLL-EMHGHT---N 220 (745)
T ss_pred EEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccC------ceee-eeeccc---e
Confidence 999999999999974 78899999999999999999875 588999999999999965 2333 244666 7
Q ss_pred CeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCC
Q 004924 572 IVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 644 (723)
Q Consensus 572 ~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~ 644 (723)
-+.+++..+++..+++ |.|+++++|+.. ++.+.+..+ ...|+++.+-++|. +++|++||.||||....
T Consensus 221 ~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP--ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 221 FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP--TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC--ccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 8999997777777777 799999999985 777777643 56899999988887 67888899999998763
No 118
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=3e-23 Score=208.49 Aligned_cols=250 Identities=14% Similarity=0.245 Sum_probs=194.0
Q ss_pred CCCceEEEEEeCCC-CEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---
Q 004924 373 FGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 448 (723)
Q Consensus 373 h~~~V~~l~fspdg-~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--- 448 (723)
|.++|+.+.+-|.. ..+|+.+..+.|.|||.....- . ....+.+...+...+|.+.-.+++|+
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s---~----------~~~~~~~~Pdl~L~gH~~eg~glsWn~~~ 189 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPS---K----------PKASGECRPDLRLKGHEKEGYGLSWNRQQ 189 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCC---c----------ccccccCCCceEEEeeccccccccccccc
Confidence 89999999999965 4566677789999999875322 0 00011111111112688877889999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCc-------EEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCC--CCcEEEEEc
Q 004924 449 GSHLFSAS-GGKISIFSLETFQ-------TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPC--TKKTKAKLK 516 (723)
Q Consensus 449 ~~~l~s~s-dg~I~vwd~~~~~-------~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~--~~~~~~~l~ 516 (723)
...|++++ |++|++||+.... ....+.+|...|..++|++.. .|++++.|+.+.|||++ +.++.+...
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ 269 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK 269 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc
Confidence 56788888 9999999996532 345677999999999999988 99999999999999999 566677788
Q ss_pred CcCCcEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEE-EE-EcCCcE
Q 004924 517 GHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL-LS-IHEGQI 593 (723)
Q Consensus 517 ~~~~~i~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l-~~-s~dg~I 593 (723)
+|.+.|+|++|+| ++..||+|+.|++|++||+++-. .++. ...+|. ..|..+.|||+..-+ ++ |.|+.+
T Consensus 270 ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~----~~lh-~~e~H~---dev~~V~WSPh~etvLASSg~D~rl 341 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN----KPLH-TFEGHE---DEVFQVEWSPHNETVLASSGTDRRL 341 (422)
T ss_pred ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc----cCce-eccCCC---cceEEEEeCCCCCceeEecccCCcE
Confidence 9999999999999 55779999999999999999832 3555 456676 799999999987554 45 599999
Q ss_pred EEEECCCCceeE------------EecCCCCCCCeEEEEEeeCCcE-EEEEeCCCcEEEEECC
Q 004924 594 DVYEAPTLNHTS------------QLVPDKMDLPITYATYSCDGKC-IYVSCKSGHVKVFDTS 643 (723)
Q Consensus 594 ~vwd~~~~~~~~------------~~~~~~h~~~v~~l~~spdg~~-l~sgs~dg~I~iwd~~ 643 (723)
.|||+..-...+ -|.-.+|...|..+.|+|+..+ |++.++|+.+.||+..
T Consensus 342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 999986422111 2444578999999999998875 5578899999999976
No 119
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1e-21 Score=205.83 Aligned_cols=289 Identities=16% Similarity=0.214 Sum_probs=227.8
Q ss_pred CCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCEE
Q 004924 374 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 452 (723)
Q Consensus 374 ~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l 452 (723)
..+|.++|||.+.+.||.+-.||.|.+|++...- +......++....|.+++|+ +..|
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w---------------------~~~~vi~g~~drsIE~L~W~e~~RL 83 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW---------------------FLEPVIHGPEDRSIESLAWAEGGRL 83 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCc---------------------eeeEEEecCCCCceeeEEEccCCeE
Confidence 5799999999999999999999999999977421 11222223467789999999 8888
Q ss_pred EEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEE--EEEcCcCCcEEEEEEc
Q 004924 453 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK--AKLKGHQNRITCLAYS 528 (723)
Q Consensus 453 ~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~--~~l~~~~~~i~~l~~s 528 (723)
++.+ +|.|.-||+.+++....+....+.|++++.+|.+ .++.|+.||.+..++...++.. ..|...++.|.+++|+
T Consensus 84 FS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~ 163 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN 163 (691)
T ss_pred EeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEec
Confidence 8888 9999999999999999999999999999999999 9999999998888888777654 3344567899999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeceee--eeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEE
Q 004924 529 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFL--HSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQ 606 (723)
Q Consensus 529 pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l--~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~ 606 (723)
|++..+++|+.||.|++||...+........ ..+..+.. .-|+++.|-.++..+..-+.|+|.+||...+.+++.
T Consensus 164 ~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~---~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS 240 (691)
T KOG2048|consen 164 PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREP---TIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQS 240 (691)
T ss_pred CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCc---eEEEEEEEeecCcEEEecCCceEEEEcccCcchhhh
Confidence 9999999999999999999998755441111 11122111 467888888776544444889999999999999988
Q ss_pred ecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEEC
Q 004924 607 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 686 (723)
Q Consensus 607 ~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~ 686 (723)
+.. |...|.+++..+++.++++++.|+.|.-|...++........ +..+|.+.+. +++..+ ..+++||.
T Consensus 241 ~~~--h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~----~r~~h~hdvr--s~av~~---~~l~sgG~ 309 (691)
T KOG2048|consen 241 HSC--HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINS----RRDLHAHDVR--SMAVIE---NALISGGR 309 (691)
T ss_pred hhh--hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeec----cccCCcccce--eeeeec---ceEEecce
Confidence 874 689999999999999999999999999998887754322221 1123466666 777766 38888888
Q ss_pred CCcEEEEecCC
Q 004924 687 NGRVHVIEPLE 697 (723)
Q Consensus 687 Dg~v~iWd~~~ 697 (723)
|.++.+=....
T Consensus 310 d~~l~i~~s~~ 320 (691)
T KOG2048|consen 310 DFTLAICSSRE 320 (691)
T ss_pred eeEEEEccccc
Confidence 88887755443
No 120
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.9e-21 Score=201.48 Aligned_cols=352 Identities=14% Similarity=0.141 Sum_probs=251.2
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcc--
Q 004924 331 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ-- 408 (723)
Q Consensus 331 ~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~-- 408 (723)
..++.+.+.+|.+-.+|.|.||++.. .-+....+.+ +....|.+++|++.|+ |.+.+.+|+|.-||+.+.+.
T Consensus 31 lA~s~kS~~lAvsRt~g~IEiwN~~~----~w~~~~vi~g-~~drsIE~L~W~e~~R-LFS~g~sg~i~EwDl~~lk~~~ 104 (691)
T KOG2048|consen 31 LAYSHKSNQLAVSRTDGNIEIWNLSN----NWFLEPVIHG-PEDRSIESLAWAEGGR-LFSSGLSGSITEWDLHTLKQKY 104 (691)
T ss_pred EEEeccCCceeeeccCCcEEEEccCC----CceeeEEEec-CCCCceeeEEEccCCe-EEeecCCceEEEEecccCceeE
Confidence 33666677799999999999999984 5555554665 3578999999996555 78999999999999987654
Q ss_pred ---cccccceee----------------eeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcC
Q 004924 409 ---SLEEENVNM----------------ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE 466 (723)
Q Consensus 409 ---~~g~~~~~~----------------~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~ 466 (723)
..|..+-++ ....++...+.+.........++.|.+++|+ +..+++|+ ||.|++||+.
T Consensus 105 ~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 105 NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence 222221111 1233444444444443444467899999999 66799999 9999999999
Q ss_pred CCcEEEEEe-------C-CCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEe
Q 004924 467 TFQTLATFA-------N-PPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG 538 (723)
Q Consensus 467 ~~~~~~~~~-------~-~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s 538 (723)
++..+.... . ...-|+++.+-.++.|++|...|+|.+||...|+.++.+..|...|.+++.++++.++++++
T Consensus 185 ~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG 264 (691)
T KOG2048|consen 185 SGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG 264 (691)
T ss_pred CCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc
Confidence 988776321 1 23346888888777999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCceee-------------------------------------------------------------ce
Q 004924 539 ADAQLCVWDAVGWKKLC-------------------------------------------------------------SK 557 (723)
Q Consensus 539 ~dg~I~vwd~~~~~~~~-------------------------------------------------------------~~ 557 (723)
.|+.|.-|...++.... ..
T Consensus 265 vd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~ 344 (691)
T KOG2048|consen 265 VDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPEN 344 (691)
T ss_pred CCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccc
Confidence 99988877665531100 00
Q ss_pred eeeeeecCCC-------------------------CCCCCeEEEEEccCCCEEEEEcCCcEEEEECCC------------
Q 004924 558 FLHSFQTGLV-------------------------PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT------------ 600 (723)
Q Consensus 558 ~l~~~~~~~~-------------------------~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~------------ 600 (723)
.+..+...|. +....|.+.+.||+|++|+.+.=...++|.+..
T Consensus 345 ~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~ 424 (691)
T KOG2048|consen 345 RLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDV 424 (691)
T ss_pred eEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccc
Confidence 0000000000 012567889999999999986544444444332
Q ss_pred --------------------------------------CceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEEC
Q 004924 601 --------------------------------------LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 642 (723)
Q Consensus 601 --------------------------------------~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~ 642 (723)
++.+..+........|..+..||+|+|+|+.+.+|.|.+|++
T Consensus 425 ~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl 504 (691)
T KOG2048|consen 425 PLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNL 504 (691)
T ss_pred hhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEc
Confidence 000000111112467889999999999999999999999999
Q ss_pred CCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCC
Q 004924 643 STLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 643 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
++++....... -...+++++++|.+.+.++.+..|+.|.=||++..
T Consensus 505 ~~~~~~~l~~r----------ln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~ 550 (691)
T KOG2048|consen 505 ETLESHLLKVR----------LNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEAR 550 (691)
T ss_pred ccceeecchhc----------cCcceeeeeccccccCcEEEEecCCeEEEEecchh
Confidence 99875443321 12446699999767888999999999999999544
No 121
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=3.4e-23 Score=208.87 Aligned_cols=272 Identities=12% Similarity=0.076 Sum_probs=212.5
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccc
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 412 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~ 412 (723)
.|...+++.||+ .|-|+|||+....+.....++..- ...+-|.++..+|||+.|++|+.-.++.|||+..... .
T Consensus 427 IS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl--~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp---r 500 (705)
T KOG0639|consen 427 ISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCL--NRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP---R 500 (705)
T ss_pred ecCCcceeEecC-CCeEEEeeccCCCCCCcccccccc--CcccceeeeEecCCCceEEeccccceeeeeeccCCCc---c
Confidence 344455555555 788999999864222222222221 1467899999999999999999999999999875322 0
Q ss_pred cceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCC
Q 004924 413 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ 489 (723)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~ 489 (723)
+...+. ...-...+++.+ .+..++|. ||.|.|||+.+...++.|.+|.+.+.|+.+++|
T Consensus 501 ----------------ikaelt--ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~d 562 (705)
T KOG0639|consen 501 ----------------IKAELT--SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKD 562 (705)
T ss_pred ----------------hhhhcC--CcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCC
Confidence 000000 122345567777 45555555 999999999999999999999999999999999
Q ss_pred C-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCC
Q 004924 490 D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP 568 (723)
Q Consensus 490 ~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~ 568 (723)
| .|.+|+-|.+|+.||++++..+.... ..+.|.++-++|++.++++|-.++.+.|......+. .+ ...|.
T Consensus 563 GtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-----yq--lhlhe- 633 (705)
T KOG0639|consen 563 GTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-----YQ--LHLHE- 633 (705)
T ss_pred CceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccc-----ee--ecccc-
Confidence 9 99999999999999999987665443 467899999999999999999999998887765321 11 22344
Q ss_pred CCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEEC
Q 004924 569 ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 642 (723)
Q Consensus 569 ~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~ 642 (723)
..|.++.|.+.|+++++ |.|+-+..|.+.-|..+...+. ...|.++.+|.|.+|+++|+.|....||.+
T Consensus 634 --ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 634 --SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred --cEEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 78999999999999998 7999999999998988776643 889999999999999999999988888865
No 122
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=3.7e-22 Score=190.30 Aligned_cols=249 Identities=14% Similarity=0.129 Sum_probs=189.1
Q ss_pred CCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCC-CcEE-EEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCC
Q 004924 437 DPKDSISCFALR---GSHLFSAS-GGKISIFSLET-FQTL-ATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK 509 (723)
Q Consensus 437 ~h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~~-~~~~-~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~ 509 (723)
...+.|.+++|| ..++++++ ||+|++|++.. |... +....|.++|.+++|+.|| .+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 467889999999 55666777 99999999976 4433 3345789999999999999 9999999999999999999
Q ss_pred cEEEEEcCcCCcEEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE
Q 004924 510 KTKAKLKGHQNRITCLAYSLSLN--VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 587 (723)
Q Consensus 510 ~~~~~l~~~~~~i~~l~~spdg~--~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~ 587 (723)
+ ...+..|..+|.++.|-+... .|++||.|++|+.||.+... ++.++... ..+.++..- ..++++
T Consensus 105 Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~-----pv~t~~LP-----eRvYa~Dv~--~pm~vV 171 (347)
T KOG0647|consen 105 Q-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN-----PVATLQLP-----ERVYAADVL--YPMAVV 171 (347)
T ss_pred C-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC-----eeeeeecc-----ceeeehhcc--CceeEE
Confidence 4 556777999999999987665 79999999999999999843 33323222 456666544 235555
Q ss_pred -EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCC--cEEEEeecccccCCCCccC
Q 004924 588 -IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL--ELRCQINLTAYAQPGTISL 664 (723)
Q Consensus 588 -s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~--~~~~~~~~~~~~~~g~~~~ 664 (723)
..+..|.+|+++++..........-.-.+.+++..+|....+.|+-+|.+.|..+..+ +.-..+..|..... ..+
T Consensus 172 ata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~--~~~ 249 (347)
T KOG0647|consen 172 ATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNS--VND 249 (347)
T ss_pred EecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCC--CCC
Confidence 5889999999987654332221123567889999999888899999999999999887 44445555543211 122
Q ss_pred ccc-eEEEEEecCCCCEEEEEECCCcEEEEecCCCcee
Q 004924 665 ELY-PLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 701 (723)
Q Consensus 665 ~v~-~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~ 701 (723)
.|+ +.+++||| .-..|+|+|.||+..+||-......
T Consensus 250 ~VYaVNsi~FhP-~hgtlvTaGsDGtf~FWDkdar~kL 286 (347)
T KOG0647|consen 250 DVYAVNSIAFHP-VHGTLVTAGSDGTFSFWDKDARTKL 286 (347)
T ss_pred ceEEecceEeec-ccceEEEecCCceEEEecchhhhhh
Confidence 344 55999999 6678999999999999998766543
No 123
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=1.4e-22 Score=210.51 Aligned_cols=294 Identities=16% Similarity=0.107 Sum_probs=208.4
Q ss_pred EEEEEeCC---CCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEE
Q 004924 378 VRLIYSHS---GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 452 (723)
Q Consensus 378 ~~l~fspd---g~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l 452 (723)
.+..|++. ...||.+..||.|.++|...... .++...+.... .|..+|..+.|. ...|
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~f--------------r~ee~~lk~~~---aH~nAifDl~wapge~~l 115 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVF--------------RLEERQLKKPL---AHKNAIFDLKWAPGESLL 115 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhc--------------chhhhhhcccc---cccceeEeeccCCCceeE
Confidence 34667653 34688888899999999764322 11221111111 699999999999 4568
Q ss_pred EEEe-CCcEEEEEcCCCcEEEE--EeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCc-----------------
Q 004924 453 FSAS-GGKISIFSLETFQTLAT--FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK----------------- 510 (723)
Q Consensus 453 ~s~s-dg~I~vwd~~~~~~~~~--~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~----------------- 510 (723)
++++ |.++++||++++++... +.+|...|.+++|.|++ .|++|+.||.|.|||++-..
T Consensus 116 VsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~ 195 (720)
T KOG0321|consen 116 VSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNT 195 (720)
T ss_pred EEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccC
Confidence 8888 99999999999988877 78999999999999998 99999999999999986321
Q ss_pred ----------EEEEEcCcCCcEEE---EEEcCCCCEEEEEeC-CCcEEEEeCCCCceeec-eeee--eeecCCCCCCCCe
Q 004924 511 ----------TKAKLKGHQNRITC---LAYSLSLNVLVSSGA-DAQLCVWDAVGWKKLCS-KFLH--SFQTGLVPETTIV 573 (723)
Q Consensus 511 ----------~~~~l~~~~~~i~~---l~~spdg~~l~s~s~-dg~I~vwd~~~~~~~~~-~~l~--~~~~~~~~~~~~v 573 (723)
.+.....+...|.+ +.+..|...|++++. |+.|+|||++....... .+.. .++. |......+
T Consensus 196 ~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t-~skrs~G~ 274 (720)
T KOG0321|consen 196 APTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPT-HSKRSVGQ 274 (720)
T ss_pred CCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccC-cccceeee
Confidence 01122234455655 667778889999887 99999999987422111 1111 0111 11112467
Q ss_pred EEEEEccCCCEEEE-EcCCcEEEEECCCCc--eeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEE
Q 004924 574 NHIQFHPDQIHLLS-IHEGQIDVYEAPTLN--HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ 650 (723)
Q Consensus 574 ~~l~~spdg~~l~~-s~dg~I~vwd~~~~~--~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~ 650 (723)
.++.....|.++.+ |.|+.|+.||+.+.. ++..+.+......-..-..+||+.+|++|+.|...++|.+.+.+.-..
T Consensus 275 ~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~ 354 (720)
T KOG0321|consen 275 VNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA 354 (720)
T ss_pred EEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh
Confidence 78888888888887 799999999997643 333333211122233456789999999999999999999998664333
Q ss_pred eecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCC
Q 004924 651 INLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 651 ~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
+.. | +.+.+++++|.|..-.-+++|++|.+++||++..+
T Consensus 355 ~l~------G---ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 355 LLL------G---HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhh------C---cceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 321 3 34556799999866667888899999999999765
No 124
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=6.7e-21 Score=198.72 Aligned_cols=271 Identities=17% Similarity=0.150 Sum_probs=196.8
Q ss_pred CCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEE-EEEe-CCcEE
Q 004924 386 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL-FSAS-GGKIS 461 (723)
Q Consensus 386 g~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l-~s~s-dg~I~ 461 (723)
+..+++++.|+.+.+||..++.. ..... .+ ..+.+++|+ ++.+ ++++ ++.|+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~---------------------~~~~~--~~-~~~~~l~~~~dg~~l~~~~~~~~~v~ 56 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEV---------------------TRTFP--VG-QRPRGITLSKDGKLLYVCASDSDTIQ 56 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCce---------------------EEEEE--CC-CCCCceEECCCCCEEEEEECCCCeEE
Confidence 35678999999999999764221 11111 22 335678898 6666 4555 79999
Q ss_pred EEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEE-EEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeC
Q 004924 462 IFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA 539 (723)
Q Consensus 462 vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~-sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~ 539 (723)
+||..+++....+..+.. +..++|+|++ .++ +++.++.|++||+.+++.+..+.. ...+.+++|+|+|..+++++.
T Consensus 57 ~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~ 134 (300)
T TIGR03866 57 VIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSE 134 (300)
T ss_pred EEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEec
Confidence 999999988877765433 4678999999 555 455689999999999888777753 344688999999999998887
Q ss_pred CC-cEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E-cCCcEEEEECCCCceeEEecCCC---C-
Q 004924 540 DA-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDK---M- 612 (723)
Q Consensus 540 dg-~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~dg~I~vwd~~~~~~~~~~~~~~---h- 612 (723)
++ .+.+||..+++.. ..+..+ ..+.+++|+|+|+++++ + .++.|++||+.+++.+..+.... +
T Consensus 135 ~~~~~~~~d~~~~~~~-----~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~ 204 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIV-----DNVLVD-----QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHP 204 (300)
T ss_pred CCCeEEEEeCCCCeEE-----EEEEcC-----CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccccccc
Confidence 75 4677898875332 212222 34578999999998865 4 58999999999988776654211 1
Q ss_pred -CCCeEEEEEeeCCcEEEEE-eCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEE-ECCCc
Q 004924 613 -DLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG-LTNGR 689 (723)
Q Consensus 613 -~~~v~~l~~spdg~~l~sg-s~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~-s~Dg~ 689 (723)
......++|+|++++++++ +.++.+.+||..+++....+.. .+.+. +++|+| ++++|+++ +.+|.
T Consensus 205 ~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---------~~~~~--~~~~~~-~g~~l~~~~~~~~~ 272 (300)
T TIGR03866 205 EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV---------GQRVW--QLAFTP-DEKYLLTTNGVSND 272 (300)
T ss_pred ccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe---------CCCcc--eEEECC-CCCEEEEEcCCCCe
Confidence 1224568899999986554 4567899999999887765431 22344 899999 88888876 56899
Q ss_pred EEEEecCCCceeeec
Q 004924 690 VHVIEPLESEVEWGK 704 (723)
Q Consensus 690 v~iWd~~~~~~~w~~ 704 (723)
|+|||+.+++.+...
T Consensus 273 i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 273 VSVIDVAALKVIKSI 287 (300)
T ss_pred EEEEECCCCcEEEEE
Confidence 999999999876554
No 125
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=2e-21 Score=203.78 Aligned_cols=335 Identities=13% Similarity=0.121 Sum_probs=234.7
Q ss_pred EEEEEeCCCeEEEEeecccCCCCce-eEEecCCCCCCCceEEEEEeCCCC---EEEEEECCCcEEEEeccCCcccccccc
Q 004924 339 SAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGD---FLVALTQTATHKLWKWQSNKQSLEEEN 414 (723)
Q Consensus 339 ~la~~s~dg~v~iw~~~~~~~~~~~-~~~~l~~~~h~~~V~~l~fspdg~---~las~s~dg~i~iWd~~~~~~~~g~~~ 414 (723)
.+|.|+++..|.++.-.. ..+ +...+.| |.+.|.+++|...+. +|||+|.|..||||.+.-....+ ...
T Consensus 161 lla~Ggs~~~v~~~s~~~----d~f~~v~el~G--H~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~-~~~ 233 (764)
T KOG1063|consen 161 LLACGGSKFVVDLYSSSA----DSFARVAELEG--HTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDED-SNE 233 (764)
T ss_pred EEEecCcceEEEEeccCC----cceeEEEEeec--cchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcc-ccc
Confidence 456667777778887652 233 3344665 999999999987544 89999999999999976433100 000
Q ss_pred eeeee--------------EEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCC--cEEEEEe
Q 004924 415 VNMES--------------QLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF--QTLATFA 475 (723)
Q Consensus 415 ~~~~~--------------~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~--~~~~~~~ 475 (723)
..... ..+...-.. ...||.+.|.++.|+ +..|++++ |.++.+|...+. -.+...+
T Consensus 234 ~e~~~t~~~~~~~f~~l~~i~~~is~ea-----ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vR 308 (764)
T KOG1063|consen 234 REDSLTTLSNLPVFMILEEIQYRISFEA-----LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVR 308 (764)
T ss_pred cccccccccCCceeeeeeeEEEEEehhh-----hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEE
Confidence 00000 001111111 122799999999999 65788888 999999987653 3333322
Q ss_pred -----CCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCC---cEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004924 476 -----NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK---KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW 546 (723)
Q Consensus 476 -----~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~---~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vw 546 (723)
+........-|+|++ .+++-+..|..++|..... .......||...|.+++|+|.|.++++++.|.+-|+|
T Consensus 309 lGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlF 388 (764)
T KOG1063|consen 309 LGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLF 388 (764)
T ss_pred eecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeee
Confidence 334567889999999 8888899999999983321 2334567899999999999999999999999887775
Q ss_pred eCCCCc--------------------eee---------------------------------------------------
Q 004924 547 DAVGWK--------------------KLC--------------------------------------------------- 555 (723)
Q Consensus 547 d~~~~~--------------------~~~--------------------------------------------------- 555 (723)
-.-..+ .+.
T Consensus 389 a~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLG 468 (764)
T KOG1063|consen 389 ARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALG 468 (764)
T ss_pred cccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccccc
Confidence 332000 000
Q ss_pred --ceeee---------------ee----------------------------ecCCCCCCCCeEEEEEccCCCEEEE-Ec
Q 004924 556 --SKFLH---------------SF----------------------------QTGLVPETTIVNHIQFHPDQIHLLS-IH 589 (723)
Q Consensus 556 --~~~l~---------------~~----------------------------~~~~~~~~~~v~~l~~spdg~~l~~-s~ 589 (723)
.++.. +. .-| +...|.+++.+|+|+.+|+ +.
T Consensus 469 LSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYG---HGyEv~~l~~s~~gnliASaCK 545 (764)
T KOG1063|consen 469 LSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYG---HGYEVYALAISPTGNLIASACK 545 (764)
T ss_pred ccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhcc---CceeEEEEEecCCCCEEeehhh
Confidence 00000 00 002 2368999999999999998 32
Q ss_pred -----CCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEE-EEeecccccCCCCcc
Q 004924 590 -----EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELR-CQINLTAYAQPGTIS 663 (723)
Q Consensus 590 -----dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~-~~~~~~~~~~~g~~~ 663 (723)
...|++|+..+...++.+. .|.-.|+.++|||||++|++.|.|.++.+|........ ..+.. ...|.
T Consensus 546 S~~~ehAvI~lw~t~~W~~~~~L~--~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~-----~k~Ht 618 (764)
T KOG1063|consen 546 SSLKEHAVIRLWNTANWLQVQELE--GHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFAC-----LKAHT 618 (764)
T ss_pred hCCccceEEEEEeccchhhhheec--ccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcc-----ccccc
Confidence 2369999998887777665 57999999999999999999999999999998543211 11111 11234
Q ss_pred CccceEEEEEecCCCCEEEEEECCCcEEEEecCCC
Q 004924 664 LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 664 ~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
.-|+ ++.|+| ++.++||+|.|.+|+||.....
T Consensus 619 RIIW--dcsW~p-de~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 619 RIIW--DCSWSP-DEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred eEEE--EcccCc-ccceeEEecCCceEEEEeccCc
Confidence 4455 999999 8999999999999999999887
No 126
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=2.6e-22 Score=201.79 Aligned_cols=245 Identities=17% Similarity=0.258 Sum_probs=186.6
Q ss_pred cCCCC-CEEEEEeCCCeEEEEeecccCCCC----cee-EEecCCCCCCCceEEEEEeCC-CCEEEEEECCCcEEEEeccC
Q 004924 333 SLPDA-DSAVCAKSLEKSVNLKLQLINEPS----ECR-TLLLPDNSFGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQS 405 (723)
Q Consensus 333 ~spdg-~~la~~s~dg~v~iw~~~~~~~~~----~~~-~~~l~~~~h~~~V~~l~fspd-g~~las~s~dg~i~iWd~~~ 405 (723)
..|.. ..+|+.+..+.|.|||........ .|+ .++|.+ |..+-.+++|++. .-+|++++.|++|.+||+..
T Consensus 132 ymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~g--H~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~ 209 (422)
T KOG0264|consen 132 YMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKG--HEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINA 209 (422)
T ss_pred hCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEe--ecccccccccccccceeEeeccCCCcEEEEeccc
Confidence 44444 456677888999999998531111 111 123444 9888889999985 34789999999999999885
Q ss_pred CcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcC--CCcEEEEEeCCCC
Q 004924 406 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLE--TFQTLATFANPPP 479 (723)
Q Consensus 406 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~--~~~~~~~~~~~~~ 479 (723)
... .++.. .......+|.+.|..++|+ ...+++++ |+.+.|||++ +.+..+...+|.+
T Consensus 210 ~~~-~~~~~---------------~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~ 273 (422)
T KOG0264|consen 210 ESK-EDKVV---------------DPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA 273 (422)
T ss_pred ccc-CCccc---------------cceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence 333 11111 0111112799999999999 67888888 8999999999 5566677789999
Q ss_pred CeEEEEEcCCC--eEEEEECCCcEEEEeCCC-CcEEEEEcCcCCcEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceee
Q 004924 480 IATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLC 555 (723)
Q Consensus 480 ~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~-~~~~~~l~~~~~~i~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~ 555 (723)
.|.|++|+|-+ .||+||.|++|.+||+++ .+++..+.+|...|.++.|+|+. ..|++++.|+.+.|||+..-....
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred ceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 99999999988 999999999999999987 46788999999999999999965 678999999999999997521111
Q ss_pred ---------ceeeeeeecCCCCCCCCeEEEEEccCCCEEEE--EcCCcEEEEECC
Q 004924 556 ---------SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAP 599 (723)
Q Consensus 556 ---------~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~--s~dg~I~vwd~~ 599 (723)
...+. +-.||. ..|..+.|+|+..++++ +.|+.+.||.+.
T Consensus 354 ~~eda~dgppEllF-~HgGH~---~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 354 SPEDAEDGPPELLF-IHGGHT---AKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ChhhhccCCcceeE-EecCcc---cccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 01122 345676 89999999999988886 488999999985
No 127
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.4e-21 Score=196.03 Aligned_cols=284 Identities=14% Similarity=0.187 Sum_probs=219.7
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 450 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 450 (723)
..+.|+++.|+|..+.|++|+.||+++||.++.... ..++... --..+|.+.+|. |.
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-------------------~~lqS~~--l~~fPi~~a~f~p~G~ 270 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-------------------PKLQSIH--LEKFPIQKAEFAPNGH 270 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccC-------------------hhheeee--eccCccceeeecCCCc
Confidence 367999999999999999999999999999764322 1111111 146788999999 66
Q ss_pred -EEEEEe-CCcEEEEEcCCCcEEEE--EeCCC-CCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEE
Q 004924 451 -HLFSAS-GGKISIFSLETFQTLAT--FANPP-PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 524 (723)
Q Consensus 451 -~l~s~s-dg~I~vwd~~~~~~~~~--~~~~~-~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~ 524 (723)
.+++++ ......||+.+.+..+. ..++. ..+..+..++++ +|+..+..|.|.+....+++.+..++ ..+.|..
T Consensus 271 ~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~ 349 (514)
T KOG2055|consen 271 SVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSD 349 (514)
T ss_pred eEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEee
Confidence 677777 78899999988765432 33333 356788899999 99999999999999999999998887 6788999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCC---
Q 004924 525 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT--- 600 (723)
Q Consensus 525 l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~--- 600 (723)
++|+.||+.|++++.+|.|.+||++.. .+++.+..... -.-++++.+++|.++|+| ..|.|.|||..+
T Consensus 350 ~~fsSdsk~l~~~~~~GeV~v~nl~~~-----~~~~rf~D~G~---v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~ 421 (514)
T KOG2055|consen 350 FTFSSDSKELLASGGTGEVYVWNLRQN-----SCLHRFVDDGS---VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFA 421 (514)
T ss_pred EEEecCCcEEEEEcCCceEEEEecCCc-----ceEEEEeecCc---cceeeeeecCCCceEEeccCcceEEEeccchhhc
Confidence 999999999999999999999999985 33443333211 334678889999999996 668999999653
Q ss_pred ---CceeEEecCCCCCCCeEEEEEeeCCcEEEEEeC--CCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEec
Q 004924 601 ---LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK--SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 675 (723)
Q Consensus 601 ---~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp 675 (723)
.+++.++.. -...|+++.|+||++.||.+|. +..+++-++.+...-..+... ..+ -+ .++|++|+|
T Consensus 422 s~~PkPik~~dN--Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~-n~~----vg--~vtc~aFSP 492 (514)
T KOG2055|consen 422 STNPKPIKTVDN--LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS-NTK----VG--HVTCMAFSP 492 (514)
T ss_pred cCCCCchhhhhh--hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCC-CCc----cc--ceEEEEecC
Confidence 234444432 2567999999999999987775 578999999887665555432 111 11 266999999
Q ss_pred CCCCEEEEEECCCcEEEEecC
Q 004924 676 LEPNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 676 ~d~~~las~s~Dg~v~iWd~~ 696 (723)
.+.+||.|..+|.|.+|.+.
T Consensus 493 -~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 493 -NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred -CCceEEeecCCCceeeEeec
Confidence 88999999999999999874
No 128
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.3e-22 Score=199.68 Aligned_cols=205 Identities=18% Similarity=0.187 Sum_probs=173.0
Q ss_pred CCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCC------
Q 004924 438 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC------ 507 (723)
Q Consensus 438 h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~------ 507 (723)
-.++|.|++-+ |.+++.|+ .|.+++|.+.+|..+..+.+|-..|+|+.|+.|| +|++|+.||.|.+|++.
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 45789999887 88888887 8999999999999999999999999999999999 99999999999999863
Q ss_pred ---CCcEEEEEcCcCCcEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCC
Q 004924 508 ---TKKTKAKLKGHQNRITCLAYSLSL--NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 582 (723)
Q Consensus 508 ---~~~~~~~l~~~~~~i~~l~~spdg--~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg 582 (723)
+-++.+.|..|.-+|+++...+.| .+++++|.|.++++||+..|..+...... ..+.+++++|-+
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp----------~si~av~lDpae 229 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP----------SSIKAVALDPAE 229 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC----------CcceeEEEcccc
Confidence 246788899999999999987754 67999999999999999998554332222 689999999999
Q ss_pred CEEEEE-cCCcEEEEECCCCc----------------eeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCC
Q 004924 583 IHLLSI-HEGQIDVYEAPTLN----------------HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 645 (723)
Q Consensus 583 ~~l~~s-~dg~I~vwd~~~~~----------------~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~ 645 (723)
+.+++| .+|.|.+.++.... .+..+.++.....|+|++++-||..|++|+.||+++|||+.+.
T Consensus 230 ~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 230 RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 999985 89999988865322 2333433222349999999999999999999999999999999
Q ss_pred cEEEEee
Q 004924 646 ELRCQIN 652 (723)
Q Consensus 646 ~~~~~~~ 652 (723)
++++++.
T Consensus 310 Q~iRtl~ 316 (476)
T KOG0646|consen 310 QCIRTLQ 316 (476)
T ss_pred HHHHHHh
Confidence 9888775
No 129
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=1e-20 Score=191.52 Aligned_cols=321 Identities=14% Similarity=0.138 Sum_probs=233.6
Q ss_pred ccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEE-ecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcc
Q 004924 330 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTL-LLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 408 (723)
Q Consensus 330 ~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~-~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~ 408 (723)
..+|.|.+..++.....+.+..|+..+ ....+.. .++++ ....|.|++|.++|. +++|.++|.|.||+..+.
T Consensus 205 ~a~FHPtd~nliit~Gk~H~~Fw~~~~---~~l~k~~~~fek~-ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~-- 277 (626)
T KOG2106|consen 205 LATFHPTDPNLIITCGKGHLYFWTLRG---GSLVKRQGIFEKR-EKKFVLCVTFLENGD-VITGDSGGNILIWSKGTN-- 277 (626)
T ss_pred EEEeccCCCcEEEEeCCceEEEEEccC---CceEEEeeccccc-cceEEEEEEEcCCCC-EEeecCCceEEEEeCCCc--
Confidence 455788887777777799999999885 2333322 23332 247899999999999 689999999999986431
Q ss_pred cccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCc-----------EE----
Q 004924 409 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQ-----------TL---- 471 (723)
Q Consensus 409 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-dg~I~vwd~~~~~-----------~~---- 471 (723)
...+... .|.+.|.+++.- +..|++|+ |..|..||-.-.+ .+
T Consensus 278 -------------------~~~k~~~--aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~ 336 (626)
T KOG2106|consen 278 -------------------RISKQVH--AHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVA 336 (626)
T ss_pred -------------------eEEeEee--ecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEe
Confidence 1112222 599999999988 77777788 9999999832100 00
Q ss_pred -------------------------EEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEE
Q 004924 472 -------------------------ATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 525 (723)
Q Consensus 472 -------------------------~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l 525 (723)
....+|....+.++.+|+. .+++++.|+.+++|+ ..+++.... ...++.|+
T Consensus 337 e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~ 413 (626)
T KOG2106|consen 337 EGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECA 413 (626)
T ss_pred cCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEe
Confidence 1123677788899999999 999999999999999 344443332 45688999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCcee
Q 004924 526 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHT 604 (723)
Q Consensus 526 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~ 604 (723)
.|+|.| .++.|+..|...+.|..+... +. +... . .+++++.|+|+|.+||+ +.|+.|++|-+......
T Consensus 414 ~fhpsg-~va~Gt~~G~w~V~d~e~~~l-----v~-~~~d-~---~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~ 482 (626)
T KOG2106|consen 414 DFHPSG-VVAVGTATGRWFVLDTETQDL-----VT-IHTD-N---EQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRK 482 (626)
T ss_pred eccCcc-eEEEeeccceEEEEeccccee-----EE-EEec-C---CceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcE
Confidence 999999 999999999999999988322 22 2222 2 78999999999999999 59999999998754433
Q ss_pred EEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEE------------eecccccCCCCccCccceEEEE
Q 004924 605 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ------------INLTAYAQPGTISLELYPLVIA 672 (723)
Q Consensus 605 ~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~------------~~~~~~~~~g~~~~~v~~~~v~ 672 (723)
.......+..+|+.+.||+|++++.+.+-|-.|-.|.......... +-...+ .|.++..++ .++
T Consensus 483 y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~--g~s~~t~i~--a~~ 558 (626)
T KOG2106|consen 483 YSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVF--GGSDGTDIN--AVA 558 (626)
T ss_pred EEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEe--cccCCchHH--Hhh
Confidence 3333334568999999999999999999999999995433222111 111111 133344455 555
Q ss_pred EecCCCCEEEEEECCCcEEEEecCC
Q 004924 673 AHPLEPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 673 ~sp~d~~~las~s~Dg~v~iWd~~~ 697 (723)
-+. +.+++|+|.+.|+|++|...-
T Consensus 559 rs~-~~~~lA~gdd~g~v~lf~yPc 582 (626)
T KOG2106|consen 559 RSH-CEKLLASGDDFGKVHLFSYPC 582 (626)
T ss_pred hhh-hhhhhhccccCceEEEEcccc
Confidence 566 778999999999999998643
No 130
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.90 E-value=4e-22 Score=219.85 Aligned_cols=260 Identities=15% Similarity=0.209 Sum_probs=204.0
Q ss_pred CCCceEEEEEeCCCCEEEEEE--CCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCC
Q 004924 373 FGGRVVRLIYSHSGDFLVALT--QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGS 450 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s--~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~ 450 (723)
+...|.++..+|||..+|||| .||.++||+.+.- .+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~v---------------l~--------------------------- 49 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPV---------------LD--------------------------- 49 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccc---------------cc---------------------------
Confidence 456789999999999999999 8999999986521 00
Q ss_pred EEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCC-------C-----------cE
Q 004924 451 HLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-------K-----------KT 511 (723)
Q Consensus 451 ~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~-------~-----------~~ 511 (723)
...-+|..-.+.+.++..|.+.|+|+.|+||| +||+|+.|+.|.||.... | ++
T Consensus 50 --------~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~ 121 (942)
T KOG0973|consen 50 --------EKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKV 121 (942)
T ss_pred --------hhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeE
Confidence 00011111234556677899999999999999 999999999999998762 1 36
Q ss_pred EEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcC
Q 004924 512 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE 590 (723)
Q Consensus 512 ~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~d 590 (723)
+..+.+|.+.|.+++|+|++.++++++.|++|.+||.+++ ..+. ...+|. +.|..+.|.|-|+|||+ +.|
T Consensus 122 ~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-----~~~~-vl~~H~---s~VKGvs~DP~Gky~ASqsdD 192 (942)
T KOG0973|consen 122 VSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-----ELLK-VLRGHQ---SLVKGVSWDPIGKYFASQSDD 192 (942)
T ss_pred EEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-----eeee-eeeccc---ccccceEECCccCeeeeecCC
Confidence 6788999999999999999999999999999999999985 2233 455676 79999999999999999 899
Q ss_pred CcEEEEECCCCceeEEecCCC----CCCCeEEEEEeeCCcEEEEEeC----CCcEEEEECCCCcEEEEeecccccCCCCc
Q 004924 591 GQIDVYEAPTLNHTSQLVPDK----MDLPITYATYSCDGKCIYVSCK----SGHVKVFDTSTLELRCQINLTAYAQPGTI 662 (723)
Q Consensus 591 g~I~vwd~~~~~~~~~~~~~~----h~~~v~~l~~spdg~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~~~g~~ 662 (723)
++|+||++.+....+.+..+- -...+..+.|||||.+|++... -.++.|.+..+.+.-..+. ||+
T Consensus 193 rtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv-------GH~ 265 (942)
T KOG0973|consen 193 RTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV-------GHS 265 (942)
T ss_pred ceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee-------cCC
Confidence 999999987766666654321 1456889999999999997542 3568899988888777776 444
Q ss_pred cCccceEEEEEecC-----C-------CC----EEEEEECCCcEEEEecCCCcee
Q 004924 663 SLELYPLVIAAHPL-----E-------PN----RIALGLTNGRVHVIEPLESEVE 701 (723)
Q Consensus 663 ~~~v~~~~v~~sp~-----d-------~~----~las~s~Dg~v~iWd~~~~~~~ 701 (723)
. ++. ++.|+|. . ++ .+|+||.|++|-||.....++.
T Consensus 266 ~-p~e--vvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl 317 (942)
T KOG0973|consen 266 A-PVE--VVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL 317 (942)
T ss_pred C-ceE--EEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence 4 455 8999862 0 11 6899999999999998777654
No 131
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.6e-22 Score=200.16 Aligned_cols=244 Identities=13% Similarity=0.119 Sum_probs=191.9
Q ss_pred CCEEEEEe--CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEE
Q 004924 449 GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 525 (723)
Q Consensus 449 ~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l 525 (723)
+.+++++. ...+.+|.+..........--.+.|.+++-+|+| +++.|+..|.|++|.+.+|..+..+.+|-..|+|+
T Consensus 50 ~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL 129 (476)
T KOG0646|consen 50 NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCL 129 (476)
T ss_pred hhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEE
Confidence 67888887 5689999987655544333446779999999999 88888899999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCC----ceeeceeeeeeecCCCCCCCCeEEEEEccCC--CEEEE-EcCCcEEEEEC
Q 004924 526 AYSLSLNVLVSSGADAQLCVWDAVGW----KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--IHLLS-IHEGQIDVYEA 598 (723)
Q Consensus 526 ~~spdg~~l~s~s~dg~I~vwd~~~~----~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg--~~l~~-s~dg~I~vwd~ 598 (723)
.|+.||.++++|+.||.|.+|++..- ......++. ...+|. -+|+++...+.| .++++ +.|.++++||+
T Consensus 130 ~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~-~f~~Ht---lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl 205 (476)
T KOG0646|consen 130 KFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH-IFSDHT---LSITDLQIGSGGTNARLYTASEDRTIKLWDL 205 (476)
T ss_pred EEeCCCcEEEecCCCccEEEEEEEeecccccCCCcccee-eeccCc---ceeEEEEecCCCccceEEEecCCceEEEEEe
Confidence 99999999999999999999987431 011234445 556676 789999887653 56666 79999999999
Q ss_pred CCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCc--EE----EE--eec-ccccCCCCccCccceE
Q 004924 599 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE--LR----CQ--INL-TAYAQPGTISLELYPL 669 (723)
Q Consensus 599 ~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~--~~----~~--~~~-~~~~~~g~~~~~v~~~ 669 (723)
..|..+.++.. ...+.+++.+|-++.+++|+++|.|.+.++.+.. .. +. ... ......||. +.-.++
T Consensus 206 S~g~LLlti~f---p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~-~~~~IT 281 (476)
T KOG0646|consen 206 SLGVLLLTITF---PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHE-NESAIT 281 (476)
T ss_pred ccceeeEEEec---CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecccc-CCccee
Confidence 99999888864 7889999999999999999999999998876533 11 00 000 011122443 323456
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEecCCCcee
Q 004924 670 VIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 701 (723)
Q Consensus 670 ~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~ 701 (723)
|++.+- ||.+|++|+.||.|+|||+.+.++.
T Consensus 282 cLais~-DgtlLlSGd~dg~VcvWdi~S~Q~i 312 (476)
T KOG0646|consen 282 CLAIST-DGTLLLSGDEDGKVCVWDIYSKQCI 312 (476)
T ss_pred EEEEec-CccEEEeeCCCCCEEEEecchHHHH
Confidence 999998 9999999999999999999987754
No 132
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2e-22 Score=213.66 Aligned_cols=282 Identities=13% Similarity=0.185 Sum_probs=211.6
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCC-CCCCCceEEEEEeC-CCCEEEEEECCCcEEEEeccCCcccc
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD-NSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSL 410 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~-~~h~~~V~~l~fsp-dg~~las~s~dg~i~iWd~~~~~~~~ 410 (723)
..++-..++.++ ...+.+|.+........|... ..+ +.-.-.+..|.|+. +.++||+++..|.|.+||+....-
T Consensus 47 ~nr~~~qiv~AG-rs~lklyai~~~~~~~~~~~~-~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-- 122 (839)
T KOG0269|consen 47 VNRDINQIVVAG-RSLLKLYAINPNDFSEKCNHR-FKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR-- 122 (839)
T ss_pred ecCCcceeEEec-ccceeeEeeCcccCCcceeee-cccccceeeehhhcccccchhhhheeecCCCcEEEEecCcccc--
Confidence 445666677776 456677777643222233322 111 01122445677875 568999999999999999873100
Q ss_pred cccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEE
Q 004924 411 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 486 (723)
Q Consensus 411 g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~ 486 (723)
.+....+ ..|+..++++.|+ ..+|++|+ ||+|++||++..+...++.+....|..+.|
T Consensus 123 nk~l~~f------------------~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~f 184 (839)
T KOG0269|consen 123 NKLLTVF------------------NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKF 184 (839)
T ss_pred chhhhHh------------------hhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceee
Confidence 0111111 1599999999999 78999999 999999999999999999998899999999
Q ss_pred cCCC--eEEEEECCCcEEEEeCCCC-cEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeee
Q 004924 487 LPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 563 (723)
Q Consensus 487 ~p~~--~l~sgs~dg~I~iwd~~~~-~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~ 563 (723)
+|.. .|+++...|.+.+||++.. ++...+..|.++|.|+.|+|++.+||+|+.|+.|+|||+.+++... +.++.
T Consensus 185 sp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~---~~tIn 261 (839)
T KOG0269|consen 185 SPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP---KHTIN 261 (839)
T ss_pred ccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc---eeEEe
Confidence 9976 9999999999999999864 5667888999999999999999999999999999999998765433 33333
Q ss_pred cCCCCCCCCeEEEEEccCCCEEE-EE---cCCcEEEEECCCCce-eEEecCCCCCCCeEEEEEee-CCcEEEEEeCCCcE
Q 004924 564 TGLVPETTIVNHIQFHPDQIHLL-SI---HEGQIDVYEAPTLNH-TSQLVPDKMDLPITYATYSC-DGKCIYVSCKSGHV 637 (723)
Q Consensus 564 ~~~~~~~~~v~~l~~spdg~~l~-~s---~dg~I~vwd~~~~~~-~~~~~~~~h~~~v~~l~~sp-dg~~l~sgs~dg~I 637 (723)
.. .+|.++.|-|...+.+ ++ .|..|+|||++..-. ..++. .|...++.++|.. |...+.+++.||+|
T Consensus 262 Ti-----apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~--eH~~~vt~i~W~~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 262 TI-----APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL--EHTDSVTGIAWDSGDRINLWSCSKDGTV 334 (839)
T ss_pred ec-----ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeee--ccCccccceeccCCCceeeEeecCccHH
Confidence 33 7899999999976554 43 678999999975443 33443 5789999999954 56688899999998
Q ss_pred EEEECCCCc
Q 004924 638 KVFDTSTLE 646 (723)
Q Consensus 638 ~iwd~~~~~ 646 (723)
..-..+++.
T Consensus 335 ~qh~~knat 343 (839)
T KOG0269|consen 335 LQHLFKNAT 343 (839)
T ss_pred HHhhhhccc
Confidence 766655543
No 133
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.2e-21 Score=185.71 Aligned_cols=284 Identities=16% Similarity=0.157 Sum_probs=209.2
Q ss_pred eEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEE
Q 004924 377 VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS 454 (723)
Q Consensus 377 V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s 454 (723)
..|+.||+.|.+||+|..||.|.|||+.+... +.++ .+|..+|++++|| |+.|++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i------------------ar~l-----saH~~pi~sl~WS~dgr~Llt 82 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI------------------ARML-----SAHVRPITSLCWSRDGRKLLT 82 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch------------------hhhh-----hccccceeEEEecCCCCEeee
Confidence 78999999999999999999999999875321 1111 1799999999999 999999
Q ss_pred Ee-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEEEEEcC------cCCcEEEE
Q 004924 455 AS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKG------HQNRITCL 525 (723)
Q Consensus 455 ~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~~l~~------~~~~i~~l 525 (723)
++ |..|.+||+..|.+++.++ ...+|+.+.|+|.. ..++.-.+..-.+-++..+ .+.+-. ....-.+.
T Consensus 83 sS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~ 159 (405)
T KOG1273|consen 83 SSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHG 159 (405)
T ss_pred ecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccc
Confidence 99 9999999999999888875 35679999999987 4444444554555555442 222211 11122334
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCC---
Q 004924 526 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL--- 601 (723)
Q Consensus 526 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~--- 601 (723)
.|.+.|+++++|...|.+.++|..+.++.....+.+ . ..|..+.++..|+.++. +.|..||.|+++.-
T Consensus 160 ~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits-----~---~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~ 231 (405)
T KOG1273|consen 160 VFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS-----V---QAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE 231 (405)
T ss_pred cccCCCCEEEEecCcceEEEEecchheeeeeeeech-----h---eeeeEEEEeccCcEEEEecCCceEEEEehhhhccc
Confidence 689999999999999999999999865544433331 1 57899999999999999 79999999998621
Q ss_pred ----cee--EEecCCCCCCCeEEEEEeeCCcEEEEEeCC-CcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEe
Q 004924 602 ----NHT--SQLVPDKMDLPITYATYSCDGKCIYVSCKS-GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAH 674 (723)
Q Consensus 602 ----~~~--~~~~~~~h~~~v~~l~~spdg~~l~sgs~d-g~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~s 674 (723)
++. +.+..--....-.+++||.+|.|+++|+.- ..+|||....|.+++.+.+. .+.. ..++.|+
T Consensus 232 ~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~-------kgE~--l~DV~wh 302 (405)
T KOG1273|consen 232 GRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGT-------KGEE--LLDVNWH 302 (405)
T ss_pred CccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCC-------chhh--eeecccc
Confidence 111 111100013345578999999999988753 67999999999999998642 2222 3489999
Q ss_pred cCCCCEEEEEECCCcEEEEecCCCceeeecCC
Q 004924 675 PLEPNRIALGLTNGRVHVIEPLESEVEWGKLP 706 (723)
Q Consensus 675 p~d~~~las~s~Dg~v~iWd~~~~~~~w~~~~ 706 (723)
| -...+++. ..|.|+||.....+ .|....
T Consensus 303 p-~rp~i~si-~sg~v~iw~~~~~e-nwsafA 331 (405)
T KOG1273|consen 303 P-VRPIIASI-ASGVVYIWAVVQVE-NWSAFA 331 (405)
T ss_pred c-ceeeeeec-cCCceEEEEeeccc-chhhcC
Confidence 9 56677777 78999999986654 566543
No 134
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=2.6e-21 Score=183.50 Aligned_cols=279 Identities=14% Similarity=0.150 Sum_probs=205.3
Q ss_pred CCCCEEEEEeCCCeEEEEeecccC---CCC-ceeEEe---cCC-CCCCCceEEEEEeC-CCCEEEEEECCCcEEEEeccC
Q 004924 335 PDADSAVCAKSLEKSVNLKLQLIN---EPS-ECRTLL---LPD-NSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQS 405 (723)
Q Consensus 335 pdg~~la~~s~dg~v~iw~~~~~~---~~~-~~~~~~---l~~-~~h~~~V~~l~fsp-dg~~las~s~dg~i~iWd~~~ 405 (723)
..|+++++|+.||.|.+||+++.. ..+ .++..- .+. .+|.-.|..+.|-| |...+.++|.|.+++|||..+
T Consensus 54 tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnT 133 (397)
T KOG4283|consen 54 TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNT 133 (397)
T ss_pred ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeeccc
Confidence 368999999999999999998632 011 111111 111 46888999999999 556788899999999999875
Q ss_pred CcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-----CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCC
Q 004924 406 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFSLETFQTLATFANPPP 479 (723)
Q Consensus 406 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-----~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~ 479 (723)
.+. ... + ...+.|.+-+++ -.++|+|. +-.|++.|+.+|.+.+++.+|.+
T Consensus 134 lQ~-----a~~-----F--------------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~ 189 (397)
T KOG4283|consen 134 LQE-----AVD-----F--------------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD 189 (397)
T ss_pred cee-----eEE-----e--------------ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC
Confidence 332 111 1 134555555665 33566666 78999999999999999999999
Q ss_pred CeEEEEEcCCC--eEEEEECCCcEEEEeCCCC-cEEEEE--------------cCcCCcEEEEEEcCCCCEEEEEeCCCc
Q 004924 480 IATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKL--------------KGHQNRITCLAYSLSLNVLVSSGADAQ 542 (723)
Q Consensus 480 ~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~-~~~~~l--------------~~~~~~i~~l~~spdg~~l~s~s~dg~ 542 (723)
.|.++.|+|.. .|++|+.||.|++||++.. -+...+ ..|.+.|+.++|+.+|.++++++.|..
T Consensus 190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r 269 (397)
T KOG4283|consen 190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR 269 (397)
T ss_pred ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc
Confidence 99999999998 8999999999999999753 222222 247789999999999999999999999
Q ss_pred EEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEE
Q 004924 543 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY 621 (723)
Q Consensus 543 I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~ 621 (723)
+++|+..+|+........ ..|......-..+. +-+...++. -.++.+.++++-++..+..+.. |...+.+.++
T Consensus 270 ~r~wn~~~G~ntl~~~g~---~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~--h~k~i~c~~~ 343 (397)
T KOG4283|consen 270 IRVWNMESGRNTLREFGP---IIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLST--HLKRINCAAY 343 (397)
T ss_pred eEEeecccCccccccccc---ccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeec--ccceeeEEee
Confidence 999999987532211111 11110001111122 333334443 4779999999999999888874 5888999999
Q ss_pred eeCCcEEEEEeCCCcEEEEECC
Q 004924 622 SCDGKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 622 spdg~~l~sgs~dg~I~iwd~~ 643 (723)
-|+-+...+|..|+.|+.|-..
T Consensus 344 ~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 344 RPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred cCchhhhhccccCCcccccccc
Confidence 9999999999999999999863
No 135
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=6.3e-21 Score=182.84 Aligned_cols=263 Identities=13% Similarity=0.127 Sum_probs=198.6
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCccccc
Q 004924 332 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 411 (723)
Q Consensus 332 ~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g 411 (723)
.|+|.++.|+.+++||.+++|++.. ......+. |..++.+++|.++.. +++|+.||.|+.+|+.++..
T Consensus 20 ~f~~~~~~LLvssWDgslrlYdv~~---~~l~~~~~-----~~~plL~c~F~d~~~-~~~G~~dg~vr~~Dln~~~~--- 87 (323)
T KOG1036|consen 20 KFSPSSSDLLVSSWDGSLRLYDVPA---NSLKLKFK-----HGAPLLDCAFADEST-IVTGGLDGQVRRYDLNTGNE--- 87 (323)
T ss_pred EEcCcCCcEEEEeccCcEEEEeccc---hhhhhhee-----cCCceeeeeccCCce-EEEeccCceEEEEEecCCcc---
Confidence 3778888899999999999999985 22222232 899999999998654 89999999999999875332
Q ss_pred ccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcC
Q 004924 412 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP 488 (723)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p 488 (723)
. . .+.|..+|.|+.++ .+.+++|+ |++|++||.........+... ..|.++....
T Consensus 88 --~--------------~-----igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v~g 145 (323)
T KOG1036|consen 88 --D--------------Q-----IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDVSG 145 (323)
T ss_pred --e--------------e-----eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-ceEEEEeccC
Confidence 1 1 12599999999999 77899999 999999999875555555433 3677776643
Q ss_pred CCeEEEEECCCcEEEEeCCCCcEEEEE--cCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCC
Q 004924 489 QDLFAFGFDDSSILVHCPCTKKTKAKL--KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 566 (723)
Q Consensus 489 ~~~l~sgs~dg~I~iwd~~~~~~~~~l--~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~ 566 (723)
+ .|++|+.|..|.+||+++....... ....-.+.|+++.|++.-.++++-||.|.+=.++..+....+... +..|
T Consensus 146 ~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkya--FkCH 222 (323)
T KOG1036|consen 146 N-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYA--FKCH 222 (323)
T ss_pred C-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhcee--EEee
Confidence 3 8999999999999999875443222 123457899999998888999999999988766654211111111 1111
Q ss_pred C------CCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeC
Q 004924 567 V------PETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 633 (723)
Q Consensus 567 ~------~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~ 633 (723)
. ....+|++++|+|-...+++ |.||.|.+||+.+.+.+..+.. ....|.+++|+.||..||+|+.
T Consensus 223 r~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~--~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 223 RLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK--YETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC--CCCceEEEEeccCCCeEEEEec
Confidence 1 01257999999999999999 5999999999999888777743 2567999999999999999874
No 136
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.3e-20 Score=180.31 Aligned_cols=256 Identities=12% Similarity=0.118 Sum_probs=187.2
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCC----CcEEEEEeCCCCCeEEEEEcCCC---eEEEEECCCcEEEEeC
Q 004924 437 DPKDSISCFALR--GSHLFSAS-GGKISIFSLET----FQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCP 506 (723)
Q Consensus 437 ~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~----~~~~~~~~~~~~~v~~l~~~p~~---~l~sgs~dg~I~iwd~ 506 (723)
+|.+-|.++.|. |+.+|+|+ |++|+|||... ..+....+.|.+.|..+.|.+.. .+|+++.|+++.||.=
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 699999999999 99999999 99999999643 35667788999999999997654 8999999999999974
Q ss_pred CC---------CcEEEEEcCcCCcEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCceeeceeee-e------eecCCCC
Q 004924 507 CT---------KKTKAKLKGHQNRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLH-S------FQTGLVP 568 (723)
Q Consensus 507 ~~---------~~~~~~l~~~~~~i~~l~~sp--dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~-~------~~~~~~~ 568 (723)
.. -....++....+.|+++.|.| -|-.+++++.||.+|||+.-.-.......++ . .+..+.
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~- 169 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK- 169 (361)
T ss_pred cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc-
Confidence 21 122345666788999999999 4678999999999999987542211111111 0 111222
Q ss_pred CCCCeEEEEEccC---CCEEEEEcCC------cEEEEECCCC--ceeEEecCCCCCCCeEEEEEeeCC----cEEEEEeC
Q 004924 569 ETTIVNHIQFHPD---QIHLLSIHEG------QIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCDG----KCIYVSCK 633 (723)
Q Consensus 569 ~~~~v~~l~~spd---g~~l~~s~dg------~I~vwd~~~~--~~~~~~~~~~h~~~v~~l~~spdg----~~l~sgs~ 633 (723)
.+..|+.|+|. ..+|++|.+. .++||....+ +....-...+|..+|++++|.|+- ..||+++.
T Consensus 170 --~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 170 --QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred --CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence 57789999975 3678877555 8888886543 333332334689999999999963 57899999
Q ss_pred CCcEEEEECCCC------------cEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 634 SGHVKVFDTSTL------------ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 634 dg~I~iwd~~~~------------~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
|| |+||++... .....+........+.|.+.++ .+.|+- .|..|++.|+||.||+|...-..
T Consensus 248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VW--rv~wNm-tGtiLsStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVW--RVRWNM-TGTILSSTGDDGCVRLWKANYNN 321 (361)
T ss_pred Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceE--EEEEee-eeeEEeecCCCceeeehhhhhhh
Confidence 99 999998742 1122222222222233566788 999999 79999999999999999976543
No 137
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.1e-20 Score=204.18 Aligned_cols=263 Identities=15% Similarity=0.181 Sum_probs=205.8
Q ss_pred cCCCCCEEEEEeCCCeEEEEeeccc-CCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCccccc
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLI-NEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 411 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~-~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g 411 (723)
+-|+|..|.+++.||.|++|+.... +.+.. + . .+...|.+++. ++.+|++|+.+++|.+|...++..
T Consensus 21 ~d~~gefi~tcgsdg~ir~~~~~sd~e~P~t---i--~--~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~--- 88 (933)
T KOG1274|consen 21 YDPDGEFICTCGSDGDIRKWKTNSDEEEPET---I--D--ISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEE--- 88 (933)
T ss_pred EcCCCCEEEEecCCCceEEeecCCcccCCch---h--h--ccCceeEEEee--cccceEEeeccceEEEeeCCCCCc---
Confidence 7789999999999999999998753 11111 1 1 15566777665 455899999999999999875432
Q ss_pred ccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcC
Q 004924 412 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP 488 (723)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p 488 (723)
+.++. ...-++.+++|+ |+++|.|+ |-.|++-++.+....+.+++|..+|.++.++|
T Consensus 89 ---------------~~iL~-----Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p 148 (933)
T KOG1274|consen 89 ---------------DTILA-----RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP 148 (933)
T ss_pred ---------------cceee-----eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC
Confidence 11111 256788999999 78999999 88999999999999999999999999999999
Q ss_pred CC-eEEEEECCCcEEEEeCCCCcEEEEEcC-------c-CCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceee
Q 004924 489 QD-LFAFGFDDSSILVHCPCTKKTKAKLKG-------H-QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 559 (723)
Q Consensus 489 ~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~-------~-~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l 559 (723)
.+ +||+.+.||.|++||+.++.+...+.+ . ...+..++|+|+|..++..+.|+.|++|+..+++... .
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f--~- 225 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQF--K- 225 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehe--e-
Confidence 99 999999999999999999988777654 1 3456788999998899999999999999999975422 1
Q ss_pred eeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEE
Q 004924 560 HSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK 638 (723)
Q Consensus 560 ~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~ 638 (723)
+...+.. ..+..+.|+|+|+|||++ .+|.|.|||..+... +.....|++++|-|+++-+-.-...|...
T Consensus 226 --Lr~~~~s--s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~g~~~ 295 (933)
T KOG1274|consen 226 --LRDKLSS--SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITALGTLG 295 (933)
T ss_pred --ecccccc--cceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeeccccc
Confidence 2222221 458999999999999995 999999999987322 12367899999999987665554445444
Q ss_pred EE
Q 004924 639 VF 640 (723)
Q Consensus 639 iw 640 (723)
+|
T Consensus 296 ~~ 297 (933)
T KOG1274|consen 296 VS 297 (933)
T ss_pred cC
Confidence 44
No 138
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=2.7e-21 Score=195.05 Aligned_cols=289 Identities=16% Similarity=0.165 Sum_probs=214.6
Q ss_pred EEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCC-EEEEEECCCcEEEEeccCCcccccccceeee
Q 004924 340 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSLEEENVNME 418 (723)
Q Consensus 340 la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~-~las~s~dg~i~iWd~~~~~~~~g~~~~~~~ 418 (723)
+-.++...++++||.........+...+ ....+.++.|+.... .+++.+.|..+++|.-.. +
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t-----~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g------~------ 67 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQT-----AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDG------K------ 67 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCC-----CCCcceeeeccccceEEEeecCCceeEEEecccC------C------
Confidence 4455666789999998643223332222 233589999988764 233344578899987432 1
Q ss_pred eEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEE
Q 004924 419 SQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAF 494 (723)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~s 494 (723)
++++......++ ..-.|++.. ..|+++|+ .+.|+|||++...+.+.+..|...|+++.++..+ +||+
T Consensus 68 -------~~~Vp~~~k~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAs 138 (673)
T KOG4378|consen 68 -------TPEVPRVRKLTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIAS 138 (673)
T ss_pred -------CCccceeecccc--chHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEE
Confidence 111111111111 123344433 57889999 9999999999877888889999999999999988 9999
Q ss_pred EECCCcEEEEeCCCCcEEEEEcCc-CCcEEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCC
Q 004924 495 GFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNV-LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI 572 (723)
Q Consensus 495 gs~dg~I~iwd~~~~~~~~~l~~~-~~~i~~l~~spdg~~-l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~ 572 (723)
++..|.|.|..+.++.....|.-. ...|.-+.|+|..+. |.+++.+|.|.+||+.+. .++......|. .+
T Consensus 139 vs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~-----sp~~~~~~~Hs---AP 210 (673)
T KOG4378|consen 139 VSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM-----SPIFHASEAHS---AP 210 (673)
T ss_pred eccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC-----Ccccchhhhcc---CC
Confidence 999999999999998887777644 345568899997765 678899999999999883 45555677787 78
Q ss_pred eEEEEEccCCCEEEE--EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCC-cEEE
Q 004924 573 VNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL-ELRC 649 (723)
Q Consensus 573 v~~l~~spdg~~l~~--s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~-~~~~ 649 (723)
...++|+|....|++ |.|..|.+||++..+....+.. ..+...++|+++|.+|++|+..|.|+.||++.. .++.
T Consensus 211 ~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~ 287 (673)
T KOG4378|consen 211 CRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVA 287 (673)
T ss_pred cCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCCce
Confidence 999999998866664 7999999999998877777653 678999999999999999999999999999864 4555
Q ss_pred EeecccccCCCCccCccceEEEEEec
Q 004924 650 QINLTAYAQPGTISLELYPLVIAAHP 675 (723)
Q Consensus 650 ~~~~~~~~~~g~~~~~v~~~~v~~sp 675 (723)
++.. |+.. +++++|-|
T Consensus 288 v~sa--------h~~s--Vt~vafq~ 303 (673)
T KOG4378|consen 288 VRSA--------HDAS--VTRVAFQP 303 (673)
T ss_pred Eeee--------cccc--eeEEEeee
Confidence 5543 2333 55999988
No 139
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=9.6e-22 Score=208.53 Aligned_cols=286 Identities=13% Similarity=0.100 Sum_probs=214.0
Q ss_pred CceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---CCE
Q 004924 375 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSH 451 (723)
Q Consensus 375 ~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~ 451 (723)
.....++..++-..++.++. ..+.|+.+..... ....++....+. .-.-.+..|.|. .++
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~-------~~~~~~~~k~kq---------n~~~S~~DVkW~~~~~Nl 102 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDF-------SEKCNHRFKTKQ---------NKFYSAADVKWGQLYSNL 102 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccC-------Ccceeeeccccc---------ceeeehhhcccccchhhh
Confidence 45567777888888887776 4677777653222 011111111000 011234567787 889
Q ss_pred EEEEe-CCcEEEEEcCC---CcEEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEE
Q 004924 452 LFSAS-GGKISIFSLET---FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 525 (723)
Q Consensus 452 l~s~s-dg~I~vwd~~~---~~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l 525 (723)
||+++ .|.|.+||+.. .+.+..|..|...++++.|++.. .|++|+.||+|++||++..+...++.+....|.++
T Consensus 103 IAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV 182 (839)
T KOG0269|consen 103 IATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDV 182 (839)
T ss_pred heeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhce
Confidence 99999 99999999976 55666788999999999999988 99999999999999999999999999999999999
Q ss_pred EEcC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCce
Q 004924 526 AYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH 603 (723)
Q Consensus 526 ~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~ 603 (723)
+|+| .+..++++.+.|.+.+||++... .+.. ....|. ++|.++.|+|++.+||+ |.|+.|+|||+.+.+.
T Consensus 183 ~fsp~~~~~F~s~~dsG~lqlWDlRqp~----r~~~-k~~AH~---GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~ 254 (839)
T KOG0269|consen 183 KFSPGYGNKFASIHDSGYLQLWDLRQPD----RCEK-KLTAHN---GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA 254 (839)
T ss_pred eeccCCCceEEEecCCceEEEeeccCch----hHHH-Hhhccc---CceEEEeecCCCceeeecCCCccEEEEeccCCCc
Confidence 9999 67889999999999999999732 2222 245676 89999999999999999 5999999999976543
Q ss_pred --eEEecCCCCCCCeEEEEEeeCCcEE-EEEe--CCCcEEEEECCCCcE-EEEeecccccCCCCccCccceEEEEEecCC
Q 004924 604 --TSQLVPDKMDLPITYATYSCDGKCI-YVSC--KSGHVKVFDTSTLEL-RCQINLTAYAQPGTISLELYPLVIAAHPLE 677 (723)
Q Consensus 604 --~~~~~~~~h~~~v~~l~~spdg~~l-~sgs--~dg~I~iwd~~~~~~-~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d 677 (723)
..++. ...+|.++.|-|+.++. ++++ .|-.|+|||++..-+ ..++.. |... ++.++|-..|
T Consensus 255 ~~~~tIn---Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e--------H~~~--vt~i~W~~~d 321 (839)
T KOG0269|consen 255 KPKHTIN---TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE--------HTDS--VTGIAWDSGD 321 (839)
T ss_pred cceeEEe---ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeec--------cCcc--ccceeccCCC
Confidence 33442 27889999999987754 4433 478899999986432 233332 2332 4489997767
Q ss_pred CCEEEEEECCCcEEEEecCCC
Q 004924 678 PNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 678 ~~~las~s~Dg~v~iWd~~~~ 698 (723)
...+.+++.||+|..-.+.++
T Consensus 322 ~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 322 RINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeeEeecCccHHHHhhhhcc
Confidence 788999999999876655443
No 140
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=8.3e-21 Score=183.03 Aligned_cols=291 Identities=14% Similarity=0.130 Sum_probs=209.4
Q ss_pred CCCceEEEEEeC----C-CCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEE
Q 004924 373 FGGRVVRLIYSH----S-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 447 (723)
Q Consensus 373 h~~~V~~l~fsp----d-g~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 447 (723)
|..+|..++|++ + -..+|++|. ..+.+|+...... ++ +++......|......++|
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~----------ir--------~lq~y~D~d~~Esfytcsw 97 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGG----------IR--------LLQSYADEDHDESFYTCSW 97 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccc----------ee--------eeeeccCCCCCcceEEEEE
Confidence 889999999985 2 234555554 5788888663210 11 1222222247788888999
Q ss_pred e------CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEEEEEc--
Q 004924 448 R------GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK-- 516 (723)
Q Consensus 448 s------~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~~l~-- 516 (723)
+ +.++|+|+ -|.|+|.|+.++++...+.+|+..|..+.++|+. +++++|.|.+|++|++++..++..|.
T Consensus 98 ~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~ 177 (385)
T KOG1034|consen 98 SYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV 177 (385)
T ss_pred EecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc
Confidence 8 34788888 8999999999999999999999999999999999 89999999999999999999998874
Q ss_pred -CcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee-------------ceeee---------eeecCCCCCCCCe
Q 004924 517 -GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC-------------SKFLH---------SFQTGLVPETTIV 573 (723)
Q Consensus 517 -~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~-------------~~~l~---------~~~~~~~~~~~~v 573 (723)
||...|.++.|+++|.++++++.|.+|++|++...+... ..++. +...-|. ..|
T Consensus 178 egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHr---nyV 254 (385)
T KOG1034|consen 178 EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHR---NYV 254 (385)
T ss_pred ccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccccc---chH
Confidence 599999999999999999999999999999998422110 00000 0011122 344
Q ss_pred EEEEEccCCCEEEE-EcCCcEEEEECC-CCce-------------eEEecCCCCCCCeEEEEE--eeCCcEEEEEeCCCc
Q 004924 574 NHIQFHPDQIHLLS-IHEGQIDVYEAP-TLNH-------------TSQLVPDKMDLPITYATY--SCDGKCIYVSCKSGH 636 (723)
Q Consensus 574 ~~l~~spdg~~l~~-s~dg~I~vwd~~-~~~~-------------~~~~~~~~h~~~v~~l~~--spdg~~l~sgs~dg~ 636 (723)
.|+.|- |.++++ +.++.|..|... -++. ..++.. ....|+-+.| .|-++.||.|...|.
T Consensus 255 DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~--~~c~iWfirf~~d~~~~~la~gnq~g~ 330 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDY--PMCDIWFIRFAFDPWQKMLALGNQSGK 330 (385)
T ss_pred HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEecc--CccceEEEEEeecHHHHHHhhccCCCc
Confidence 455554 567888 788899999872 1221 122221 1345555554 567899999999999
Q ss_pred EEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecC
Q 004924 637 VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 637 I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~ 696 (723)
|++||++.......-+... ...+..|. ..+|+. |+.+|+...+|++|.-||.-
T Consensus 331 v~vwdL~~~ep~~~ttl~~----s~~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 331 VYVWDLDNNEPPKCTTLTH----SKSGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEECCCCCCccCceEEe----ccccceee--eeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 9999999876632111110 00133444 889999 89999999999999999864
No 141
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=7.7e-23 Score=215.09 Aligned_cols=229 Identities=14% Similarity=0.210 Sum_probs=200.0
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEE
Q 004924 437 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 512 (723)
Q Consensus 437 ~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~ 512 (723)
.|...|.++..- ++.+++|+ |..+.+|.+.....+..+.+|..+|.++.|+++. .|++|+.+|+|++||+..++.+
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v 105 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV 105 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh
Confidence 488888888766 78899999 8889999998877778899999999999999999 9999999999999999999999
Q ss_pred EEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCC
Q 004924 513 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG 591 (723)
Q Consensus 513 ~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg 591 (723)
+++.+|...+.++.|+|-|.+.++|+.|+.+++||++.. .+.+ ...+|. ..+..+.|+|+|++++.+ .|.
T Consensus 106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~-----Gc~~-~~~s~~---~vv~~l~lsP~Gr~v~~g~ed~ 176 (825)
T KOG0267|consen 106 RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK-----GCSH-TYKSHT---RVVDVLRLSPDGRWVASGGEDN 176 (825)
T ss_pred hhhhccccCcceeeeccceEEeccccccccceehhhhcc-----Ccee-eecCCc---ceeEEEeecCCCceeeccCCcc
Confidence 999999999999999999999999999999999999852 3344 455576 788999999999999995 779
Q ss_pred cEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEE
Q 004924 592 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 671 (723)
Q Consensus 592 ~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v 671 (723)
.++|||...|+....|.. |.+.+..+.|+|..-++++|+.|+++++||+++.+.+...... -.++. +.
T Consensus 177 tvki~d~~agk~~~ef~~--~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--------~~~v~--~~ 244 (825)
T KOG0267|consen 177 TVKIWDLTAGKLSKEFKS--HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--------TDGVR--SL 244 (825)
T ss_pred eeeeeccccccccccccc--ccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--------cCCce--ee
Confidence 999999999999988864 6899999999999999999999999999999998877765432 22344 99
Q ss_pred EEecCCCCEEEEEECC
Q 004924 672 AAHPLEPNRIALGLTN 687 (723)
Q Consensus 672 ~~sp~d~~~las~s~D 687 (723)
+|+| ++..+++|..+
T Consensus 245 ~fn~-~~~~~~~G~q~ 259 (825)
T KOG0267|consen 245 AFNP-DGKIVLSGEQI 259 (825)
T ss_pred eecC-CceeeecCchh
Confidence 9999 88888877554
No 142
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3.2e-20 Score=177.57 Aligned_cols=248 Identities=10% Similarity=0.182 Sum_probs=182.3
Q ss_pred CCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---
Q 004924 372 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 448 (723)
Q Consensus 372 ~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--- 448 (723)
+|.+-|.++.|.+.|+.+|+|+.|++++|||..... |.-...- -|. .|.+.|..+.|.
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s---~~W~~Ts---~Wr-------------ah~~Si~rV~WAhPE 71 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS---GTWSCTS---SWR-------------AHDGSIWRVVWAHPE 71 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCC---CceEEee---eEE-------------ecCCcEEEEEecCcc
Confidence 599999999999999999999999999999964321 1111100 122 599999999998
Q ss_pred -CCEEEEEe-CCcEEEEEcCC---------CcEEEEEeCCCCCeEEEEEcCCC---eEEEEECCCcEEEEeCCCC-----
Q 004924 449 -GSHLFSAS-GGKISIFSLET---------FQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTK----- 509 (723)
Q Consensus 449 -~~~l~s~s-dg~I~vwd~~~---------~~~~~~~~~~~~~v~~l~~~p~~---~l~sgs~dg~I~iwd~~~~----- 509 (723)
|+.+|+|+ |+++.||.-.. .....++......|+.+.|.|.. .+|+++.||.++||+.-.-
T Consensus 72 fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~ 151 (361)
T KOG2445|consen 72 FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ 151 (361)
T ss_pred ccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc
Confidence 99999999 99999997521 12344566677889999999975 9999999999999986432
Q ss_pred -cEEEEEc-------CcCCcEEEEEEcCC---CCEEEEEeCC-----CcEEEEeCCCCceeeceeeeeeecCCCCCCCCe
Q 004924 510 -KTKAKLK-------GHQNRITCLAYSLS---LNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 573 (723)
Q Consensus 510 -~~~~~l~-------~~~~~i~~l~~spd---g~~l~s~s~d-----g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v 573 (723)
.....+. .+..+..|+.|+|. ..+|++|+.+ +.++||....+... ...+.+++ +|. .+|
T Consensus 152 W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK-w~kva~L~-d~~---dpI 226 (361)
T KOG2445|consen 152 WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK-WLKVAELP-DHT---DPI 226 (361)
T ss_pred chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce-eeeehhcC-CCC---Ccc
Confidence 2222222 35677889999974 3567877765 47888877653211 22333344 565 899
Q ss_pred EEEEEccCC----CEEEE-EcCCcEEEEECCCCc-----------------eeEEec-CCCCCCCeEEEEEeeCCcEEEE
Q 004924 574 NHIQFHPDQ----IHLLS-IHEGQIDVYEAPTLN-----------------HTSQLV-PDKMDLPITYATYSCDGKCIYV 630 (723)
Q Consensus 574 ~~l~~spdg----~~l~~-s~dg~I~vwd~~~~~-----------------~~~~~~-~~~h~~~v~~l~~spdg~~l~s 630 (723)
++++|.|+- ..||+ +.|| |+||.+.... .+..+. ...|.+.|+.+.|.-.|..|++
T Consensus 227 ~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsS 305 (361)
T KOG2445|consen 227 RDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSS 305 (361)
T ss_pred eeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEee
Confidence 999999973 45666 5888 9999987311 111111 2468999999999999999999
Q ss_pred EeCCCcEEEEECCC
Q 004924 631 SCKSGHVKVFDTST 644 (723)
Q Consensus 631 gs~dg~I~iwd~~~ 644 (723)
.+.||.|++|...-
T Consensus 306 tGdDG~VRLWkany 319 (361)
T KOG2445|consen 306 TGDDGCVRLWKANY 319 (361)
T ss_pred cCCCceeeehhhhh
Confidence 99999999998654
No 143
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.2e-20 Score=194.77 Aligned_cols=280 Identities=14% Similarity=0.176 Sum_probs=204.1
Q ss_pred CCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--C
Q 004924 372 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 449 (723)
Q Consensus 372 ~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~ 449 (723)
||++.|.|++..|.|.+||+|+.||+|+||.+.++.+ +.+.. ..+.|.|++|+ +
T Consensus 398 GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc---------------------vr~~~---~d~~I~~vaw~P~~ 453 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC---------------------VRTVQ---FDSEIRSVAWNPLS 453 (733)
T ss_pred ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE---------------------EEEEe---ecceeEEEEecCCC
Confidence 4999999999999999999999999999999886544 22111 34456677776 1
Q ss_pred --CEEEEEeCCcEE---------------------------------EEEcCCC----cEEEEEeCCCCCeEEEEEcCCC
Q 004924 450 --SHLFSASGGKIS---------------------------------IFSLETF----QTLATFANPPPIATYFILLPQD 490 (723)
Q Consensus 450 --~~l~s~sdg~I~---------------------------------vwd~~~~----~~~~~~~~~~~~v~~l~~~p~~ 490 (723)
..||++-++.+. .|.-... .-++..-.|...|..+.|+..|
T Consensus 454 ~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG 533 (733)
T KOG0650|consen 454 DLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG 533 (733)
T ss_pred CceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence 233333333333 3332210 0122334677889999999999
Q ss_pred -eEEEEECC---CcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCC
Q 004924 491 -LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 566 (723)
Q Consensus 491 -~l~sgs~d---g~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~ 566 (723)
+|++...+ ..|.|+++........|+...+.|.++.|+|...+|++++ ...|++||+..++. +.++..+.
T Consensus 534 DYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqel-----vKkL~tg~ 607 (733)
T KOG0650|consen 534 DYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQEL-----VKKLLTGS 607 (733)
T ss_pred ceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHH-----HHHHhcCC
Confidence 98887664 3789999988777777776778899999999998888877 46899999987432 22233333
Q ss_pred CCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCC-ceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCC
Q 004924 567 VPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 644 (723)
Q Consensus 567 ~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~-~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~ 644 (723)
..|.+++.+|.|..|+. +.|+.+..+|+.-. ++.+++. .|...+++++|++.-.++++|+.||++.||.-.-
T Consensus 608 ----kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr--~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~V 681 (733)
T KOG0650|consen 608 ----KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLR--LHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMV 681 (733)
T ss_pred ----eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhh--hhhhhhhhhhhccccceeeeecCCCcEEEEeeee
Confidence 57999999999977777 69999999999754 4555554 4689999999999999999999999999987432
Q ss_pred C---------cEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEe
Q 004924 645 L---------ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 694 (723)
Q Consensus 645 ~---------~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd 694 (723)
. -.+..+.+|.. .+..-++++.||| ...+|+++|.||+|++|.
T Consensus 682 Y~Dl~qnpliVPlK~L~gH~~------~~~~gVLd~~wHP-~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 682 YNDLLQNPLIVPLKRLRGHEK------TNDLGVLDTIWHP-RQPWLFSAGADGTIRLFT 733 (733)
T ss_pred ehhhhcCCceEeeeeccCcee------ecccceEeecccC-CCceEEecCCCceEEeeC
Confidence 1 12233332221 1223367899999 678999999999999983
No 144
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.9e-20 Score=186.75 Aligned_cols=279 Identities=13% Similarity=0.133 Sum_probs=213.9
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCC-EEEEEECCCcEEEEeccCCccccc
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSLE 411 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~-~las~s~dg~i~iWd~~~~~~~~g 411 (723)
|.|....+.+|+.|++++||.+++..+ ..++.+.| ...+|.++.|.|+|. .++++|.......||+.+.+.
T Consensus 221 FHp~~plllvaG~d~~lrifqvDGk~N-~~lqS~~l----~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~--- 292 (514)
T KOG2055|consen 221 FHPTAPLLLVAGLDGTLRIFQVDGKVN-PKLQSIHL----EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV--- 292 (514)
T ss_pred ecCCCceEEEecCCCcEEEEEecCccC-hhheeeee----ccCccceeeecCCCceEEEecccceEEEEeecccccc---
Confidence 667778899999999999999986432 24444444 367999999999998 888999989999999875433
Q ss_pred ccceeeeeEEEecCCCeeeeeccCCCCC-CCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEc
Q 004924 412 EENVNMESQLYQPSSKLVMTNDIAADPK-DSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 487 (723)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~ 487 (723)
.+.....++. ..+.....+ +++|+..+ .|.|.+....+++.+.+++- .+.|..++|+
T Consensus 293 ------------------~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fs 353 (514)
T KOG2055|consen 293 ------------------TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFS 353 (514)
T ss_pred ------------------ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEe
Confidence 1100011222 234445555 88999988 99999999999999888853 5678999999
Q ss_pred CCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcE--EEEEEcCCCCEEEEEeCCCcEEEEeCCCCce-eeceeeeeee
Q 004924 488 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI--TCLAYSLSLNVLVSSGADAQLCVWDAVGWKK-LCSKFLHSFQ 563 (723)
Q Consensus 488 p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i--~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~-~~~~~l~~~~ 563 (723)
.++ .|++++.+|.|++||+++..+++.+.. .+.| ++++.+++|.++++|+..|.|.|||.++.-. ...+++.++.
T Consensus 354 Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d 432 (514)
T KOG2055|consen 354 SDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD 432 (514)
T ss_pred cCCcEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh
Confidence 999 888888899999999999999998864 2333 4667789999999999999999999765311 1123444332
Q ss_pred cCCCCCCCCeEEEEEccCCCEEEEE---cCCcEEEEECCCCceeEEecCCC-CCCCeEEEEEeeCCcEEEEEeCCCcEEE
Q 004924 564 TGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPTLNHTSQLVPDK-MDLPITYATYSCDGKCIYVSCKSGHVKV 639 (723)
Q Consensus 564 ~~~~~~~~~v~~l~~spdg~~l~~s---~dg~I~vwd~~~~~~~~~~~~~~-h~~~v~~l~~spdg~~l~sgs~dg~I~i 639 (723)
.-. ..|+++.|+||++.||.+ .+..+++-.+.+......+.... .-+.|+|++|||.|.++|.|..+|.+.+
T Consensus 433 NLt----t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l 508 (514)
T KOG2055|consen 433 NLT----TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHL 508 (514)
T ss_pred hhh----eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceee
Confidence 222 579999999999999863 66789999988777666664321 2467999999999999999999999999
Q ss_pred EECC
Q 004924 640 FDTS 643 (723)
Q Consensus 640 wd~~ 643 (723)
|.+.
T Consensus 509 ~kL~ 512 (514)
T KOG2055|consen 509 FKLH 512 (514)
T ss_pred Eeec
Confidence 9875
No 145
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=3.3e-22 Score=210.36 Aligned_cols=250 Identities=18% Similarity=0.196 Sum_probs=209.3
Q ss_pred EEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeee
Q 004924 339 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNME 418 (723)
Q Consensus 339 ~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~ 418 (723)
.++....+-.+++|+... +. .|...|.|+..-..++.+++|+.|..+-+|.+...
T Consensus 6 ~~m~~~~~t~Lr~~~~~~-----------~~--~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp------------ 60 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTRE-----------FV--AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP------------ 60 (825)
T ss_pred ccceeeeeeccccccchh-----------hh--hhhhhhceeeeeccceeeccCCCceeeccccccCC------------
Confidence 345555566678888763 21 28899999998788899999999999999986531
Q ss_pred eEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEE
Q 004924 419 SQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAF 494 (723)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~s 494 (723)
|...+ ..+|..+|.++.|+ ..+|++|+ +|+|++||++.++.++++.+|...+.++.|+|-+ +++.
T Consensus 61 ---~~i~S--------~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~ 129 (825)
T KOG0267|consen 61 ---NAITS--------LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFAS 129 (825)
T ss_pred ---chhhe--------eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecc
Confidence 11111 11799999999999 55677777 9999999999999999999999999999999999 9999
Q ss_pred EECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeE
Q 004924 495 GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN 574 (723)
Q Consensus 495 gs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~ 574 (723)
|+.|+.+++||++..-+.+.+.+|...+.++.|+|+|+++++++.|.++++||...|+. +. -+..|. +.+.
T Consensus 130 gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~-----~~-ef~~~e---~~v~ 200 (825)
T KOG0267|consen 130 GSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKL-----SK-EFKSHE---GKVQ 200 (825)
T ss_pred ccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccc-----cc-cccccc---cccc
Confidence 99999999999998889999999999999999999999999999999999999988643 22 234555 7899
Q ss_pred EEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCC
Q 004924 575 HIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG 635 (723)
Q Consensus 575 ~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg 635 (723)
++.|+|..-.++. +.|+++++||+++.+.+....+. ...|.+.+|+|++..+++|..+.
T Consensus 201 sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 201 SLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCCceeeecCchhh
Confidence 9999998777777 59999999999988887776543 78899999999999999987654
No 146
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=5.3e-20 Score=176.35 Aligned_cols=275 Identities=11% Similarity=0.036 Sum_probs=203.3
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCccccc
Q 004924 332 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 411 (723)
Q Consensus 332 ~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g 411 (723)
.|++-|.++|+|..||.|.|||+.+ ..+-.. +. +|..+|.+++||+||+.|+|+|.|..|.+||+..+
T Consensus 30 ~Fs~~G~~lAvGc~nG~vvI~D~~T----~~iar~-ls--aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g----- 97 (405)
T KOG1273|consen 30 QFSRWGDYLAVGCANGRVVIYDFDT----FRIARM-LS--AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG----- 97 (405)
T ss_pred EeccCcceeeeeccCCcEEEEEccc----cchhhh-hh--ccccceeEEEecCCCCEeeeecCCceeEEEeccCC-----
Confidence 4899999999999999999999984 332222 44 49999999999999999999999999999998743
Q ss_pred ccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCcEEEEEeC-C----CCCeE
Q 004924 412 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFAN-P----PPIAT 482 (723)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~~~-~----~~~v~ 482 (723)
.....+ ...++|+.+.|. .+..+++- +..-.+-++..+.. ..+.. . +....
T Consensus 98 s~l~ri-------------------rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas 157 (405)
T KOG1273|consen 98 SPLKRI-------------------RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSAS 157 (405)
T ss_pred CceeEE-------------------EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccc
Confidence 222222 267888888888 33333333 55555555544221 11111 1 11223
Q ss_pred EEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcC-CcEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-------Cce
Q 004924 483 YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRITCLAYSLSLNVLVSSGADAQLCVWDAVG-------WKK 553 (723)
Q Consensus 483 ~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~-~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~-------~~~ 553 (723)
+..|.+.| ++++|...|.+.++|..+-+++..++-.. ..|..+.++..|+.++.-+.|+.||.|+++. ++.
T Consensus 158 ~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~ 237 (405)
T KOG1273|consen 158 HGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEV 237 (405)
T ss_pred cccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCc
Confidence 44688899 99999999999999999999998887655 7899999999999999999999999999873 111
Q ss_pred eeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE--cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEE
Q 004924 554 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 631 (723)
Q Consensus 554 ~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s--~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sg 631 (723)
.....++.+... ..-.+++||.+|.|++++ ....++||....|.+++.+.+. .+.....+.|+|-...+++-
T Consensus 238 e~~~K~qDvVNk-----~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~-kgE~l~DV~whp~rp~i~si 311 (405)
T KOG1273|consen 238 EPEHKLQDVVNK-----LQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGT-KGEELLDVNWHPVRPIIASI 311 (405)
T ss_pred ChhHHHHHHHhh-----hhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCC-chhheeecccccceeeeeec
Confidence 111111111110 344678999999999984 6678999999999999888753 24678889999998888887
Q ss_pred eCCCcEEEEECCCC
Q 004924 632 CKSGHVKVFDTSTL 645 (723)
Q Consensus 632 s~dg~I~iwd~~~~ 645 (723)
..|.+++|....-
T Consensus 312 -~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 312 -ASGVVYIWAVVQV 324 (405)
T ss_pred -cCCceEEEEeecc
Confidence 6799999987653
No 147
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.85 E-value=8.5e-20 Score=183.28 Aligned_cols=291 Identities=18% Similarity=0.225 Sum_probs=208.9
Q ss_pred CCCceEEEEEeCCC--CEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--
Q 004924 373 FGGRVVRLIYSHSG--DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 448 (723)
Q Consensus 373 h~~~V~~l~fspdg--~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-- 448 (723)
|...|++++|+|.. +.+|+|..-|.|-+||+.+.+. +. .+..+ ...|..+|.++.|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-d~--------------d~v~~----f~~hs~~Vs~l~F~P~ 245 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-DK--------------DGVYL----FTPHSGPVSGLKFSPA 245 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-cc--------------CceEE----eccCCccccceEecCC
Confidence 78999999999965 5788888899999999863222 10 11111 11699999999999
Q ss_pred -CCEEEEEe-CCcEEEEEcCCCcEEEEEe--CCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcE-EEEEcCcCCcE
Q 004924 449 -GSHLFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRI 522 (723)
Q Consensus 449 -~~~l~s~s-dg~I~vwd~~~~~~~~~~~--~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~-~~~l~~~~~~i 522 (723)
...+++.+ ||+|+.-|++++.....+. .....+..+.|+.+. .++.|..=|...+||.+++.. ...+.-|...|
T Consensus 246 n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 246 NTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred ChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccc
Confidence 45677777 9999999998765433333 344566788888887 777777777999999998654 56677788899
Q ss_pred EEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECC-
Q 004924 523 TCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP- 599 (723)
Q Consensus 523 ~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~- 599 (723)
+.++++|-. .++++++.|++.+|||++.-.......+. ...|. ..|.+..|||++-.|++ +.|..|+|||..
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls--t~~Hr---rsV~sAyFSPs~gtl~TT~~D~~IRv~dss~ 400 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS--TLPHR---RSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC 400 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehhhhcCCCCccee--ccccc---ceeeeeEEcCCCCceEeeccCCceEEeeccc
Confidence 999999965 56999999999999999873322221233 22344 68999999999866777 899999999983
Q ss_pred ---CCceeEEecCC-CCCC--CeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEE
Q 004924 600 ---TLNHTSQLVPD-KMDL--PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 673 (723)
Q Consensus 600 ---~~~~~~~~~~~-~h~~--~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~ 673 (723)
...+..++... .+.. ......|.|+..++++|-.-..|-|+|-..++.+..+-... ...|. .-..|
T Consensus 401 ~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~-------~~tI~-~vn~~ 472 (498)
T KOG4328|consen 401 ISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE-------SSTIP-SVNEF 472 (498)
T ss_pred ccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc-------ccccc-cceee
Confidence 23333333211 1112 23467899999999999999999999999999887763211 11222 24589
Q ss_pred ecCCCC-EEEEEECCCcEEEEecC
Q 004924 674 HPLEPN-RIALGLTNGRVHVIEPL 696 (723)
Q Consensus 674 sp~d~~-~las~s~Dg~v~iWd~~ 696 (723)
|| -+. ++|-++.-|.|+||.-+
T Consensus 473 HP-~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 473 HP-MRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cc-cccceeccCCccceEEEEecC
Confidence 99 556 45555567888888643
No 148
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.3e-19 Score=187.10 Aligned_cols=303 Identities=13% Similarity=0.113 Sum_probs=219.9
Q ss_pred cceeeccCCCC-CCceeeeCCCcccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeC
Q 004924 306 RPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 384 (723)
Q Consensus 306 ~~~~~~~~h~~-v~s~~~~~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fsp 384 (723)
.+...|.||++ +.+. ...|.|.+||+|+.||+|+||.+. ++.|..... ..+.|.|++|+|
T Consensus 391 ~~~lvyrGHtg~Vr~i-----------Svdp~G~wlasGsdDGtvriWEi~----TgRcvr~~~----~d~~I~~vaw~P 451 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSI-----------SVDPSGEWLASGSDDGTVRIWEIA----TGRCVRTVQ----FDSEIRSVAWNP 451 (733)
T ss_pred eeeeeEeccCCeEEEE-----------EecCCcceeeecCCCCcEEEEEee----cceEEEEEe----ecceeEEEEecC
Confidence 44456778888 4442 256789999999999999999999 566655432 467999999999
Q ss_pred CCC-EEEEEECCCcEEEEeccCCcc----cccccce--------eeeeEEEecCCCee----eeeccCCCCCCCeEEEEE
Q 004924 385 SGD-FLVALTQTATHKLWKWQSNKQ----SLEEENV--------NMESQLYQPSSKLV----MTNDIAADPKDSISCFAL 447 (723)
Q Consensus 385 dg~-~las~s~dg~i~iWd~~~~~~----~~g~~~~--------~~~~~~~~~~~~~~----~~~~~~~~h~~~V~~v~~ 447 (723)
.+. .+++++....+.|-+..-+.. ++..... ...+..|......- +.... .|...|..+.|
T Consensus 452 ~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I--~~~k~i~~vtW 529 (733)
T KOG0650|consen 452 LSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI--KHPKSIRQVTW 529 (733)
T ss_pred CCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE--ecCCccceeee
Confidence 764 333344444466655443311 0000000 01234676542110 11112 58999999999
Q ss_pred e--CCEEEEEe-C---CcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCC
Q 004924 448 R--GSHLFSAS-G---GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN 520 (723)
Q Consensus 448 s--~~~l~s~s-d---g~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~ 520 (723)
+ |+||++.. + ..|.|.++.......-|....+.|.++.|+|.. ++++++ ...|+|||+.....++.+.....
T Consensus 530 HrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~k 608 (733)
T KOG0650|consen 530 HRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSK 608 (733)
T ss_pred ecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCe
Confidence 9 99999987 3 468999998777666676677889999999999 777776 45799999998888877777777
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECC
Q 004924 521 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP 599 (723)
Q Consensus 521 ~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~ 599 (723)
.|..++.+|.|..|+.|+.|+.+..+|+.-+ .++.+ ....|. ..+++++|++.-..++++ .||++.|+--.
T Consensus 609 wiS~msihp~GDnli~gs~d~k~~WfDldls----skPyk-~lr~H~---~avr~Va~H~ryPLfas~sdDgtv~Vfhg~ 680 (733)
T KOG0650|consen 609 WISSMSIHPNGDNLILGSYDKKMCWFDLDLS----SKPYK-TLRLHE---KAVRSVAFHKRYPLFASGSDDGTVIVFHGM 680 (733)
T ss_pred eeeeeeecCCCCeEEEecCCCeeEEEEcccC----cchhH-Hhhhhh---hhhhhhhhccccceeeeecCCCcEEEEeee
Confidence 8999999999999999999999999999864 24555 334455 789999999999999996 66999888532
Q ss_pred ------CCc---eeEEecCCCCC----CCeEEEEEeeCCcEEEEEeCCCcEEEE
Q 004924 600 ------TLN---HTSQLVPDKMD----LPITYATYSCDGKCIYVSCKSGHVKVF 640 (723)
Q Consensus 600 ------~~~---~~~~~~~~~h~----~~v~~l~~spdg~~l~sgs~dg~I~iw 640 (723)
..- ++..+. +|. ..|..+.|+|...+|++++.||+|++|
T Consensus 681 VY~Dl~qnpliVPlK~L~--gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 681 VYNDLLQNPLIVPLKRLR--GHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eehhhhcCCceEeeeecc--CceeecccceEeecccCCCceEEecCCCceEEee
Confidence 111 233333 343 458899999999999999999999998
No 149
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=2.7e-19 Score=172.18 Aligned_cols=277 Identities=15% Similarity=0.145 Sum_probs=193.8
Q ss_pred eEEEEEeCCCCEEEEEECCCcEEEEeccCCccccc---ccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-----
Q 004924 377 VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE---EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----- 448 (723)
Q Consensus 377 V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s----- 448 (723)
...+.|||||..|++-+.|..+++|++.......+ ....+.. ..++. .....|...+|-
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~---------~~~r~----~eg~tvydy~wYs~M~s 118 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKH---------LSYRY----QEGETVYDYCWYSRMKS 118 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccc---------eeEEe----ccCCEEEEEEeeecccc
Confidence 35689999999999999999999999875433111 1100000 00000 123445555553
Q ss_pred ----CCEEEEEe-CCcEEEEEcCCCcEEEEEeC--CCC---CeEEEEEcCCC-eEEEEECCCcEEEEeC-CCCcEEEE--
Q 004924 449 ----GSHLFSAS-GGKISIFSLETFQTLATFAN--PPP---IATYFILLPQD-LFAFGFDDSSILVHCP-CTKKTKAK-- 514 (723)
Q Consensus 449 ----~~~l~s~s-dg~I~vwd~~~~~~~~~~~~--~~~---~v~~l~~~p~~-~l~sgs~dg~I~iwd~-~~~~~~~~-- 514 (723)
..++++.+ +.-|++||.-+|+....+.+ |.. ...+++|+||| .|++|. ...|+++|+ +.|..-..
T Consensus 119 ~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~ 197 (406)
T KOG2919|consen 119 DQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYT 197 (406)
T ss_pred CCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchh
Confidence 34677777 89999999999998887763 222 34689999999 887764 779999998 55543211
Q ss_pred -----EcCcCCcEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE
Q 004924 515 -----LKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI 588 (723)
Q Consensus 515 -----l~~~~~~i~~l~~spd-g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s 588 (723)
-.+..+-|.|++|+|. .+.+++|+...++-||.-..+ .++. +..+|. +.|+.+.|.++|..|.+|
T Consensus 198 t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-----~pl~-llggh~---gGvThL~~~edGn~lfsG 268 (406)
T KOG2919|consen 198 TVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-----RPLQ-LLGGHG---GGVTHLQWCEDGNKLFSG 268 (406)
T ss_pred hhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-----Ccee-eecccC---CCeeeEEeccCcCeeccc
Confidence 1234678899999994 458999999888888876663 4566 455777 899999999999999985
Q ss_pred --cCCcEEEEECCCC-ceeEEecCCCC-CCCeEEEEEeeCCcEEEEEeCCCcEEEEECCC-CcEEEEeecccccCCCCcc
Q 004924 589 --HEGQIDVYEAPTL-NHTSQLVPDKM-DLPITYATYSCDGKCIYVSCKSGHVKVFDTST-LELRCQINLTAYAQPGTIS 663 (723)
Q Consensus 589 --~dg~I~vwd~~~~-~~~~~~~~~~h-~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~-~~~~~~~~~~~~~~~g~~~ 663 (723)
.+..|-.||++.- .++..+..+.. ...-.-....|++++|++|+.||.|++||++. |..+..+.. ++
T Consensus 269 aRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~--------~s 340 (406)
T KOG2919|consen 269 ARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN--------YS 340 (406)
T ss_pred ccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc--------cc
Confidence 7789999999853 34444332110 12222344468999999999999999999998 665555432 35
Q ss_pred CccceEEEEEecCCCCEEEEEECC
Q 004924 664 LELYPLVIAAHPLEPNRIALGLTN 687 (723)
Q Consensus 664 ~~v~~~~v~~sp~d~~~las~s~D 687 (723)
..++ .++++| --.++|+++..
T Consensus 341 d~vN--gvslnP-~mpilatssGq 361 (406)
T KOG2919|consen 341 DTVN--GVSLNP-IMPILATSSGQ 361 (406)
T ss_pred cccc--ceecCc-ccceeeeccCc
Confidence 5566 999999 45677777543
No 150
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.5e-19 Score=181.09 Aligned_cols=295 Identities=11% Similarity=0.105 Sum_probs=200.8
Q ss_pred cCCCCCEEEEEeCCC---eEEEEeecccCCCCceeE-EecCCCCCCCceEEEEEeC-------CCCEEEEEECCCcEEEE
Q 004924 333 SLPDADSAVCAKSLE---KSVNLKLQLINEPSECRT-LLLPDNSFGGRVVRLIYSH-------SGDFLVALTQTATHKLW 401 (723)
Q Consensus 333 ~spdg~~la~~s~dg---~v~iw~~~~~~~~~~~~~-~~l~~~~h~~~V~~l~fsp-------dg~~las~s~dg~i~iW 401 (723)
.-|+..+|++|..+. .+.+|-.+...+.--+.+ +-+ .....|++|.. .|+|+|.|+.|..|.||
T Consensus 133 V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~il-----pafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIW 207 (463)
T KOG0270|consen 133 VKPSDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFIL-----PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIW 207 (463)
T ss_pred eccCCcEEEEeeccCCceEEEEEEEcCCCcceeEecceec-----cCcchhhhhhhcCCCCCCCcceEEEeccCceeEEe
Confidence 356666777775543 345555553110111110 001 23345777743 36799999999999999
Q ss_pred eccCCcc--c---ccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCcEEE
Q 004924 402 KWQSNKQ--S---LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLA 472 (723)
Q Consensus 402 d~~~~~~--~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~~~~~~~ 472 (723)
|+.-... | -|..... .....++ +.....+|+.+|.+++|+ .+.||+|+ |.+|++||+.+|++..
T Consensus 208 DLDI~d~v~P~~~LGs~~sk-----~~~k~~k--~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~ 280 (463)
T KOG0270|consen 208 DLDIVDAVLPCVTLGSKASK-----KKKKKGK--RSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS 280 (463)
T ss_pred ccccccccccceeechhhhh-----hhhhhcc--cccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce
Confidence 9863222 0 0100000 0000000 111122799999999999 77899999 9999999999999999
Q ss_pred EEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCc-EEEEEcCcCCcEEEEEEcCCC-CEEEEEeCCCcEEEEeC
Q 004924 473 TFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK-TKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDA 548 (723)
Q Consensus 473 ~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~-~~~~l~~~~~~i~~l~~spdg-~~l~s~s~dg~I~vwd~ 548 (723)
++..|+..|.++.|+|.. .+++|+.|++|.+.|.+... .-..++ ..+.|-.++|.|.. ..+++++.||+++-+|+
T Consensus 281 s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~ 359 (463)
T KOG0270|consen 281 SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDI 359 (463)
T ss_pred ehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeec
Confidence 999999999999999988 99999999999999998422 223333 45789999999965 45778889999999999
Q ss_pred CCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE--EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCc
Q 004924 549 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK 626 (723)
Q Consensus 549 ~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~--s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~ 626 (723)
+... .++.++ ..|. ++|.++++++....+++ +.|+.+++|++..-.........-.-+...|.++.|+-.
T Consensus 360 R~~~----~~vwt~-~AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a 431 (463)
T KOG0270|consen 360 RNPG----KPVWTL-KAHD---DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVA 431 (463)
T ss_pred CCCC----CceeEE-Eecc---CCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcc
Confidence 9842 455533 4566 79999999988766554 599999999987544322211100123355666777654
Q ss_pred -EEEEEeCCCcEEEEECCCCcEE
Q 004924 627 -CIYVSCKSGHVKVFDTSTLELR 648 (723)
Q Consensus 627 -~l~sgs~dg~I~iwd~~~~~~~ 648 (723)
+++.|+..+.++|||+.+...+
T Consensus 432 ~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 432 FTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eEEEecCccceEEEeecccChhH
Confidence 5677888889999999887654
No 151
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=2.5e-19 Score=179.43 Aligned_cols=234 Identities=14% Similarity=0.151 Sum_probs=178.9
Q ss_pred CCEEEEEe-CCcEEEEEcCCCcE---E------------------EEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEE
Q 004924 449 GSHLFSAS-GGKISIFSLETFQT---L------------------ATFANPPPIATYFILLPQD--LFAFGFDDSSILVH 504 (723)
Q Consensus 449 ~~~l~s~s-dg~I~vwd~~~~~~---~------------------~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iw 504 (723)
|+++|.|+ |..|.|||+.--.. . ....+|...|.+++|+..- .||+||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 78999999 99999999852110 0 0123678888889998776 99999999999999
Q ss_pred eCCCCcEEEEEcCcCCcEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCC
Q 004924 505 CPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 583 (723)
Q Consensus 505 d~~~~~~~~~l~~~~~~i~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~ 583 (723)
|+.+|++...+..|...|.++.|+| ....|++|+.|+++.+.|.+.-.. .....+ + . +.|-.++|.|...
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~-s~~~wk-~--~-----g~VEkv~w~~~se 342 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN-SGKEWK-F--D-----GEVEKVAWDPHSE 342 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-cCceEE-e--c-----cceEEEEecCCCc
Confidence 9999999999999999999999999 457899999999999999985111 111111 1 1 6899999999874
Q ss_pred EEE-E-EcCCcEEEEECCCC-ceeEEecCCCCCCCeEEEEEeeCC-cEEEEEeCCCcEEEEECCCCcEEEEeecccccCC
Q 004924 584 HLL-S-IHEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP 659 (723)
Q Consensus 584 ~l~-~-s~dg~I~vwd~~~~-~~~~~~~~~~h~~~v~~l~~spdg-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~ 659 (723)
..+ + ..||+++-+|+++. +++.+++ .|..+|.++++++.- .++++++.|+.|++|++.......+.. +.+.
T Consensus 343 ~~f~~~tddG~v~~~D~R~~~~~vwt~~--AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~-~~~~-- 417 (463)
T KOG0270|consen 343 NSFFVSTDDGTVYYFDIRNPGKPVWTLK--AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE-HSFK-- 417 (463)
T ss_pred eeEEEecCCceEEeeecCCCCCceeEEE--eccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc-cccc--
Confidence 433 3 48999999999975 7777776 579999999998754 578899999999999988654322211 1110
Q ss_pred CCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCcee
Q 004924 660 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 701 (723)
Q Consensus 660 g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~ 701 (723)
-+.. .|.++.|.....+|.||..+.++|||+.+..+.
T Consensus 418 ---~~rl--~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 418 ---LGRL--HCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ---ccce--eecccCCCcceEEEecCccceEEEeecccChhH
Confidence 1112 277778866678999999999999999887654
No 152
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=6.3e-19 Score=174.74 Aligned_cols=316 Identities=15% Similarity=0.105 Sum_probs=212.1
Q ss_pred CCCCCceeeeCCCcccccccCCCCCEEEEEeCCCeEEEEeecccCCCCc---eeEE-ecCCCCCCCceEEEEEeCCCCEE
Q 004924 314 DDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSE---CRTL-LLPDNSFGGRVVRLIYSHSGDFL 389 (723)
Q Consensus 314 h~~v~s~~~~~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~---~~~~-~l~~~~h~~~V~~l~fspdg~~l 389 (723)
|+.++++.|.... ...+|+|+.|..|+||.++...+.+. +... .|. .|...|+++.|+|+|..|
T Consensus 13 ~~pv~s~dfq~n~----------~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls--~H~~aVN~vRf~p~gelL 80 (434)
T KOG1009|consen 13 HEPVYSVDFQKNS----------LNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLS--RHTRAVNVVRFSPDGELL 80 (434)
T ss_pred CCceEEEEeccCc----------ccceecccCccceeeeeeeecCCCCCceeEEEeeccc--CCcceeEEEEEcCCcCee
Confidence 3446666665541 22799999999999999886543442 2111 133 499999999999999999
Q ss_pred EEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEeCCcEEEEEcCCCc
Q 004924 390 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQ 469 (723)
Q Consensus 390 as~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~sdg~I~vwd~~~~~ 469 (723)
|||+.+|.|.+|..... ++.+..+ ... - +-+...
T Consensus 81 ASg~D~g~v~lWk~~~~-------------~~~~~d~--e~~------~-------------------------~ke~w~ 114 (434)
T KOG1009|consen 81 ASGGDGGEVFLWKQGDV-------------RIFDADT--EAD------L-------------------------NKEKWV 114 (434)
T ss_pred eecCCCceEEEEEecCc-------------CCccccc--hhh------h-------------------------CccceE
Confidence 99999999999984420 0011000 000 0 001123
Q ss_pred EEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 004924 470 TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 548 (723)
Q Consensus 470 ~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~ 548 (723)
..+.+.+|...+..++|+|++ .+++|+.|..+++||+..|.....+..|...+..++|.|-+.++++-+.|...+.+++
T Consensus 115 v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~ 194 (434)
T KOG1009|consen 115 VKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSA 194 (434)
T ss_pred EEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeee
Confidence 345667899999999999999 9999999999999999999999999999999999999999999999999987777776
Q ss_pred CCCceeeceeeeeeec--C-----------CCC-CCCCeEEEEEccCCCEEEE--E---cCCc-----EEEEECCC-Cce
Q 004924 549 VGWKKLCSKFLHSFQT--G-----------LVP-ETTIVNHIQFHPDQIHLLS--I---HEGQ-----IDVYEAPT-LNH 603 (723)
Q Consensus 549 ~~~~~~~~~~l~~~~~--~-----------~~~-~~~~v~~l~~spdg~~l~~--s---~dg~-----I~vwd~~~-~~~ 603 (723)
.............++. + |.. ...-...++|+|+|..+++ + ..+. .++|+-.. .++
T Consensus 195 ~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP 274 (434)
T KOG1009|consen 195 KLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRP 274 (434)
T ss_pred eeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCc
Confidence 6532222111110110 0 000 0122345789999999986 2 2333 35555432 223
Q ss_pred eEEecCCCCCCCeEEEEEeeC-----------------CcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCcc
Q 004924 604 TSQLVPDKMDLPITYATYSCD-----------------GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 666 (723)
Q Consensus 604 ~~~~~~~~h~~~v~~l~~spd-----------------g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v 666 (723)
...+.. -..+...+.|+|= .+.+++....+.|++||.++..+......- |-..
T Consensus 275 ~~~lp~--~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~ni-------hy~~- 344 (434)
T KOG1009|consen 275 AARLPS--PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNI-------HYSA- 344 (434)
T ss_pred eeecCC--CCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeee-------eeee-
Confidence 333322 2455555555541 122333344577999999998888776532 2333
Q ss_pred ceEEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 667 YPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 667 ~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
+++++|++ ||..++..|.||...+-.++..+
T Consensus 345 -iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 345 -ITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred -ecceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 55999999 99999999999988887776554
No 153
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.83 E-value=3.1e-19 Score=175.06 Aligned_cols=244 Identities=18% Similarity=0.219 Sum_probs=183.8
Q ss_pred CCCCCeEEEEEe--CC--EEEEEe-CCcEEEEEcCC----------------CcEEEEEeCCCCCeEEEEEcCCC--eEE
Q 004924 437 DPKDSISCFALR--GS--HLFSAS-GGKISIFSLET----------------FQTLATFANPPPIATYFILLPQD--LFA 493 (723)
Q Consensus 437 ~h~~~V~~v~~s--~~--~l~s~s-dg~I~vwd~~~----------------~~~~~~~~~~~~~v~~l~~~p~~--~l~ 493 (723)
.|.+.++-+.-+ ++ +.++-+ .|.|.||++.. .+.+.++.+|...-..++|||-. .++
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 477777777666 43 444445 69999999842 24566778898888999999955 799
Q ss_pred EEECCCcEEEEeCCCCcEE---EEEcCcCCcEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCC
Q 004924 494 FGFDDSSILVHCPCTKKTK---AKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 569 (723)
Q Consensus 494 sgs~dg~I~iwd~~~~~~~---~~l~~~~~~i~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~ 569 (723)
+|..-+.|++|...+|.-. ..|.+|+..|-.++|+|.. ..+++||.||+|+|||++.+.... ++. ...|.
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~--~~~--~kAh~-- 302 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA--AVS--TKAHN-- 302 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc--eeE--eeccC--
Confidence 9988899999999887543 4567799999999999954 679999999999999999964322 222 25565
Q ss_pred CCCeEEEEEccCCCEEEEE-cCCcEEEEECCC---CceeEEecCCCCCCCeEEEEEeeCC-cEEEEEeCCCcEEEEECCC
Q 004924 570 TTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT---LNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTST 644 (723)
Q Consensus 570 ~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~---~~~~~~~~~~~h~~~v~~l~~spdg-~~l~sgs~dg~I~iwd~~~ 644 (723)
+.|+.+.|+.+-.+|++| .||+++|||++. ++++..|+ .|..+|+++.|+|.. ..+++++.|..|.+||+..
T Consensus 303 -sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk--~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 303 -SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK--YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred -CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE--eccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 799999999998888885 889999999985 56777886 479999999999854 5788899999999999864
Q ss_pred CcE-----------EEEeec-ccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEe
Q 004924 645 LEL-----------RCQINL-TAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 694 (723)
Q Consensus 645 ~~~-----------~~~~~~-~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd 694 (723)
-.- +..+.+ .-|+-.| ...+. .+.||++.+.++++.+.|| +.||.
T Consensus 380 E~D~ee~~~~a~~~L~dlPpQLLFVHqG--Qke~K--evhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 380 EADEEEIDQEAAEGLQDLPPQLLFVHQG--QKEVK--EVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred cCChhhhccccccchhcCCceeEEEecc--hhHhh--hheeccCCCCeEEEecccc-eeEEE
Confidence 322 000110 0111112 23344 8999998888999999997 55654
No 154
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=3.5e-19 Score=179.90 Aligned_cols=238 Identities=13% Similarity=0.126 Sum_probs=187.4
Q ss_pred CCeEEEEEe-CCEEEEEe---CCcEEEEEcCC--CcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEE
Q 004924 440 DSISCFALR-GSHLFSAS---GGKISIFSLET--FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 512 (723)
Q Consensus 440 ~~V~~v~~s-~~~l~s~s---dg~I~vwd~~~--~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~ 512 (723)
..+.++.|+ .+.|++++ |..+++|.-.. ++....-....+.-.|++..... ++++|+..+.|+|||++...+.
T Consensus 35 pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h 114 (673)
T KOG4378|consen 35 PGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH 114 (673)
T ss_pred CcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHh
Confidence 348899999 66676665 67788886432 22222111222244566666667 9999999999999999987788
Q ss_pred EEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE--EcC
Q 004924 513 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHE 590 (723)
Q Consensus 513 ~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~--s~d 590 (723)
+.+++|+..|+++.++-...+|++++..|.|.|-.+.++... .++. ...+ ..|.-+.|+|..+.+++ +.+
T Consensus 115 r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t--t~f~-~~sg-----qsvRll~ys~skr~lL~~asd~ 186 (673)
T KOG4378|consen 115 RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT--TTFT-IDSG-----QSVRLLRYSPSKRFLLSIASDK 186 (673)
T ss_pred hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc--ccee-cCCC-----CeEEEeecccccceeeEeeccC
Confidence 889999999999999999999999999999999999885321 1111 2222 56779999999988886 588
Q ss_pred CcEEEEECCCCceeEEecCCCCCCCeEEEEEeeC-CcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceE
Q 004924 591 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD-GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPL 669 (723)
Q Consensus 591 g~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spd-g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 669 (723)
|.|.+||+....++..+.. .|..+...+||+|. ..++++.+.|..|++||....+...++.. +++..
T Consensus 187 G~VtlwDv~g~sp~~~~~~-~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---------~~Pls-- 254 (673)
T KOG4378|consen 187 GAVTLWDVQGMSPIFHASE-AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---------SHPLS-- 254 (673)
T ss_pred CeEEEEeccCCCcccchhh-hccCCcCcceecCCccceEEEecccceEEEeecccccccceeee---------cCCcc--
Confidence 9999999987777777654 68999999999995 46788999999999999998887777764 44555
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEecCCC
Q 004924 670 VIAAHPLEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 670 ~v~~sp~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
.++|.+ +|.+|+.|+..|.|..||+..-
T Consensus 255 tvaf~~-~G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 255 TVAFSE-CGTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred eeeecC-CceEEEeecCCceEEEEecccC
Confidence 999999 9999999999999999998754
No 155
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=8.9e-19 Score=175.99 Aligned_cols=301 Identities=13% Similarity=0.101 Sum_probs=204.3
Q ss_pred eeccCCCC-CCceeeeCCCcccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCC-C
Q 004924 309 DASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS-G 386 (723)
Q Consensus 309 ~~~~~h~~-v~s~~~~~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspd-g 386 (723)
+.++-++. ++++.|.+-. .-+.+|+|..-|+|-+||+.... +..-..+.+- .|..+|.++.|+|. -
T Consensus 180 ~v~kv~~~Rit~l~fHPt~---------~~~lva~GdK~G~VG~Wn~~~~~-~d~d~v~~f~--~hs~~Vs~l~F~P~n~ 247 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTE---------NRKLVAVGDKGGQVGLWNFGTQE-KDKDGVYLFT--PHSGPVSGLKFSPANT 247 (498)
T ss_pred ceeEecccceEEEEecccC---------cceEEEEccCCCcEEEEecCCCC-CccCceEEec--cCCccccceEecCCCh
Confidence 33344444 6666666542 23468889999999999995211 1111222233 39999999999995 4
Q ss_pred CEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEE
Q 004924 387 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIF 463 (723)
Q Consensus 387 ~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vw 463 (723)
..+++.|.||+|+.-|+..... . .++... .....+..+.|+ ...++.++ -|...+|
T Consensus 248 s~i~ssSyDGtiR~~D~~~~i~------e----~v~s~~-----------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~i 306 (498)
T KOG4328|consen 248 SQIYSSSYDGTIRLQDFEGNIS------E----EVLSLD-----------TDNIWFSSLDFSAESRSVLFGDNVGNFNVI 306 (498)
T ss_pred hheeeeccCceeeeeeecchhh------H----HHhhcC-----------ccceeeeeccccCCCccEEEeecccceEEE
Confidence 6789999999999999774322 0 001110 123445667777 44555555 4799999
Q ss_pred EcCCCcE-EEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCc----EEEEEcCcCCcEEEEEEcCCCCEEEE
Q 004924 464 SLETFQT-LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK----TKAKLKGHQNRITCLAYSLSLNVLVS 536 (723)
Q Consensus 464 d~~~~~~-~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~----~~~~l~~~~~~i~~l~~spdg~~l~s 536 (723)
|.+++.. ...+.-|...|++++++|.. .+++|+.|++.+|||++.-. +.-....|...|.+..|+|++-.|++
T Consensus 307 D~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~T 386 (498)
T KOG4328|consen 307 DLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLT 386 (498)
T ss_pred EeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEe
Confidence 9988654 66677888899999999998 99999999999999988632 22233459999999999998888999
Q ss_pred EeCCCcEEEEeCCCCceeeceeeeeeecCCCC-CCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecCCCCCC
Q 004924 537 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP-ETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDL 614 (723)
Q Consensus 537 ~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~-~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~~ 614 (723)
.+.|..|+|||..--.. ...++.++...+.. .--......|.|+..+++++ .-..|-|+|-..++.+..+..+. ..
T Consensus 387 T~~D~~IRv~dss~~sa-~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~-~~ 464 (498)
T KOG4328|consen 387 TCQDNEIRVFDSSCISA-KDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE-SS 464 (498)
T ss_pred eccCCceEEeecccccc-cCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc-cc
Confidence 99999999999851000 01112222211110 00234457899999999986 67789999998888777764322 33
Q ss_pred CeEE-EEEeeCCcEEEE-EeCCCcEEEEECCC
Q 004924 615 PITY-ATYSCDGKCIYV-SCKSGHVKVFDTST 644 (723)
Q Consensus 615 ~v~~-l~~spdg~~l~s-gs~dg~I~iwd~~~ 644 (723)
.|.+ ..|+|-+..+++ |+..|.|+||--+.
T Consensus 465 tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 465 TIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred ccccceeecccccceeccCCccceEEEEecCC
Confidence 4444 468998885555 55568999986553
No 156
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.82 E-value=1.3e-18 Score=180.31 Aligned_cols=120 Identities=17% Similarity=0.267 Sum_probs=97.6
Q ss_pred CCCCceEEEEEeC-CCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--
Q 004924 372 SFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 448 (723)
Q Consensus 372 ~h~~~V~~l~fsp-dg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-- 448 (723)
+|.+.|+.+.||| +...||+||.|..|+||.+..+.. .... ..+..+ ++..-.|-++.|+
T Consensus 77 ~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~---q~LS---------ape~~~-----g~~~~~vE~l~fHpT 139 (1012)
T KOG1445|consen 77 AHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHS---QKLS---------APEIDV-----GGGNVIVECLRFHPT 139 (1012)
T ss_pred cccceeeccCccccchhhhhcccCCCeeEEEecCCCcc---cccC---------Ccceee-----cCCceEEEEeecccC
Confidence 5999999999999 456799999999999999873221 0000 000011 1344567889998
Q ss_pred -CCEEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCC
Q 004924 449 -GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT 508 (723)
Q Consensus 449 -~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~ 508 (723)
+..++++..|.+++||+.+++.+..+.+|...|.+..|+.|| .+++++.|+.|+|||.+.
T Consensus 140 aDgil~s~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 140 ADGILASGAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred cCceEEeccCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 788888889999999999999999999999999999999999 999999999999999764
No 157
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.82 E-value=9.8e-19 Score=182.11 Aligned_cols=281 Identities=13% Similarity=0.119 Sum_probs=195.1
Q ss_pred CCCEEEEEeCCCeEEEEeecccCCC-CceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccc
Q 004924 336 DADSAVCAKSLEKSVNLKLQLINEP-SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN 414 (723)
Q Consensus 336 dg~~la~~s~dg~v~iw~~~~~~~~-~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~ 414 (723)
....|+.+..||.|.++|....... .+++-... ..|.+.|..+.|-|....|++++.|.++++||+..... .|..
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~--~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l-~G~~- 138 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKP--LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL-VGGR- 138 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhccc--ccccceeEeeccCCCceeEEEccCCceeeeeeecccee-ecce-
Confidence 3456899999999999998753211 11111112 24999999999999777899999999999999886443 1111
Q ss_pred eeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCc---------------------
Q 004924 415 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ--------------------- 469 (723)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~~~~--------------------- 469 (723)
+ .+ +|...|.+++|. ...+++|+ ||.|.|||+.-..
T Consensus 139 --------------~---~~--GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp 199 (720)
T KOG0321|consen 139 --------------L---NL--GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP 199 (720)
T ss_pred --------------e---ec--ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence 0 11 799999999999 55788888 9999999985321
Q ss_pred ------EEEEEeCCCCCeEE---EEEcCCC-eEEEEEC-CCcEEEEeCCCCcEEEE--------EcCc---CCcEEEEEE
Q 004924 470 ------TLATFANPPPIATY---FILLPQD-LFAFGFD-DSSILVHCPCTKKTKAK--------LKGH---QNRITCLAY 527 (723)
Q Consensus 470 ------~~~~~~~~~~~v~~---l~~~p~~-~l~sgs~-dg~I~iwd~~~~~~~~~--------l~~~---~~~i~~l~~ 527 (723)
.++....+...|.+ +.+..|. .||+++. |+.|+|||+++...... +..| ...+.++..
T Consensus 200 skp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l 279 (720)
T KOG0321|consen 200 SKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL 279 (720)
T ss_pred CchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe
Confidence 00111233344444 4555666 8888877 99999999987544322 2223 345778888
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEE
Q 004924 528 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQ 606 (723)
Q Consensus 528 spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~ 606 (723)
...|.+|...+.|+.|+.|++.+-.. .++. ...++... .--..-..+||+.++++ +.|...++|.+.+.+.--.
T Consensus 280 DssGt~L~AsCtD~sIy~ynm~s~s~---sP~~-~~sg~~~~-sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~ 354 (720)
T KOG0321|consen 280 DSSGTYLFASCTDNSIYFYNMRSLSI---SPVA-EFSGKLNS-SFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA 354 (720)
T ss_pred cCCCCeEEEEecCCcEEEEeccccCc---Cchh-hccCcccc-eeeeeeecCCCCceEeccCCCcceeeeeecCccCChh
Confidence 88889988888899999999987321 2222 22222100 11122356899999999 5999999999987665433
Q ss_pred ecCCCCCCCeEEEEEeeCC-cEEEEEeCCCcEEEEECCCC
Q 004924 607 LVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTL 645 (723)
Q Consensus 607 ~~~~~h~~~v~~l~~spdg-~~l~sgs~dg~I~iwd~~~~ 645 (723)
... +|...|++++|.|.. .-++++++|..+++|++..+
T Consensus 355 ~l~-Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 355 LLL-GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhh-CcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 333 579999999998743 34666799999999999765
No 158
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=5.9e-20 Score=203.66 Aligned_cols=243 Identities=17% Similarity=0.226 Sum_probs=186.0
Q ss_pred CCCCeEEEEEe--CC----EEEEEe-CCcEEEEEcCC---C---cEEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEE
Q 004924 438 PKDSISCFALR--GS----HLFSAS-GGKISIFSLET---F---QTLATFANPPPIATYFILLPQD--LFAFGFDDSSIL 502 (723)
Q Consensus 438 h~~~V~~v~~s--~~----~l~s~s-dg~I~vwd~~~---~---~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~ 502 (723)
.....+.++|. |. .||.|. ||.|.+||... + ..+.+...|.+.|..+.|++.. .+|+|+.||.|.
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 35567889998 43 366666 99999999865 2 3456677899999999999987 999999999999
Q ss_pred EEeCCCCcEEEEEc--CcCCcEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEc
Q 004924 503 VHCPCTKKTKAKLK--GHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 579 (723)
Q Consensus 503 iwd~~~~~~~~~l~--~~~~~i~~l~~spd-g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~s 579 (723)
|||+..-+.-.... .....|.+++|+.. ...|++++.+|.+.|||++..+ ++-.+...... ..+..++|+
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~-----pii~ls~~~~~--~~~S~l~Wh 215 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK-----PIIKLSDTPGR--MHCSVLAWH 215 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC-----cccccccCCCc--cceeeeeeC
Confidence 99998744333331 14578999999874 3568899999999999999842 22212222110 347899999
Q ss_pred cCC-CEEEE-E-cC--CcEEEEECCCCc-eeEEecCCCCCCCeEEEEEeeCC-cEEEEEeCCCcEEEEECCCCcEEEEee
Q 004924 580 PDQ-IHLLS-I-HE--GQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQIN 652 (723)
Q Consensus 580 pdg-~~l~~-s-~d--g~I~vwd~~~~~-~~~~~~~~~h~~~v~~l~~spdg-~~l~sgs~dg~I~iwd~~~~~~~~~~~ 652 (723)
|++ ..+++ + .| -.|.+||++... +++.+. .|...|.++.|++.+ .+|++++.|+.|.+|+.++|+.+..+.
T Consensus 216 P~~aTql~~As~dd~~PviqlWDlR~assP~k~~~--~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 216 PDHATQLLVASGDDSAPVIQLWDLRFASSPLKILE--GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred CCCceeeeeecCCCCCceeEeecccccCCchhhhc--ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence 997 34444 4 33 379999998543 445553 579999999999865 899999999999999999999998885
Q ss_pred cccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 653 LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 653 ~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
. .+ -|+..+.|+|.+...+++++-||.|-|+.+....
T Consensus 294 ~--------~~--nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 294 A--------QG--NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred C--------CC--cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 3 13 3455999999888899999999999999987654
No 159
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.81 E-value=1.5e-18 Score=180.81 Aligned_cols=268 Identities=13% Similarity=0.166 Sum_probs=204.2
Q ss_pred cccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCC
Q 004924 327 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 406 (723)
Q Consensus 327 ~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~ 406 (723)
|.....+-|||..++.+. ++.+.+||.++ +...+. +.+ |.+.|+|++||.||+.+|||+.|..|.+|+..-
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~nd----G~llqt-LKg--HKDtVycVAys~dGkrFASG~aDK~VI~W~~kl- 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSD----GTLLQP-LKG--HKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL- 84 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCC----cccccc-ccc--ccceEEEEEEccCCceeccCCCceeEEEecccc-
Confidence 344455899999999887 67889999985 333333 444 999999999999999999999999999998542
Q ss_pred cccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEE
Q 004924 407 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYF 484 (723)
Q Consensus 407 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l 484 (723)
.|.+.. .|.+.|.|+.|+ ...|++|+=...-+|........+ . .....+.++
T Consensus 85 -------------------EG~LkY-----SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K-~-kss~R~~~C 138 (1081)
T KOG1538|consen 85 -------------------EGILKY-----SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK-H-KSSSRIICC 138 (1081)
T ss_pred -------------------cceeee-----ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh-h-hhheeEEEe
Confidence 111111 599999999999 889999995566788875432211 1 223567899
Q ss_pred EEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEc---CcCCcEEEEEEcCCC-----CEEEEEeCCCcEEEEeCCCCceee
Q 004924 485 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK---GHQNRITCLAYSLSL-----NVLVSSGADAQLCVWDAVGWKKLC 555 (723)
Q Consensus 485 ~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~---~~~~~i~~l~~spdg-----~~l~s~s~dg~I~vwd~~~~~~~~ 555 (723)
+|..|| +++.|-.+|+|.+-+-. |+....+. |..++|.+++|+|.. ..+++.....++.++.+.+.....
T Consensus 139 sWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk 217 (1081)
T KOG1538|consen 139 SWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK 217 (1081)
T ss_pred eecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecc
Confidence 999999 99999999999998743 44444443 467899999999953 468888888999999887621111
Q ss_pred ceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC
Q 004924 556 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS 634 (723)
Q Consensus 556 ~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d 634 (723)
.+.+. -...|+.+.++|.+++. |.|+.+.+|.- .|-.+.++- .....|+.++..|++++++.|+.|
T Consensus 218 ~r~L~----------FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg--~~D~WIWtV~~~PNsQ~v~~GCqD 284 (1081)
T KOG1538|consen 218 DRALN----------FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVG--EQDSWIWTVQAKPNSQYVVVGCQD 284 (1081)
T ss_pred cccCC----------CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeecc--ccceeEEEEEEccCCceEEEEEcc
Confidence 22222 34568999999999998 69999999965 555555553 358899999999999999999999
Q ss_pred CcEEEEECC
Q 004924 635 GHVKVFDTS 643 (723)
Q Consensus 635 g~I~iwd~~ 643 (723)
|+|..|++.
T Consensus 285 GTiACyNl~ 293 (1081)
T KOG1538|consen 285 GTIACYNLI 293 (1081)
T ss_pred CeeehhhhH
Confidence 999999864
No 160
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.8e-17 Score=152.37 Aligned_cols=287 Identities=14% Similarity=0.156 Sum_probs=201.1
Q ss_pred CceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEE
Q 004924 375 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFS 454 (723)
Q Consensus 375 ~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s 454 (723)
..|..-+++|.+++|++|+.+|+|-+..+.+... +.. . +.....+-.. .+|.++|+.++|.+.+|++
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s--~sa--------~-~~gk~~iv~e--qahdgpiy~~~f~d~~Lls 77 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDS--GSA--------E-PPGKLKIVPE--QAHDGPIYYLAFHDDFLLS 77 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhc--ccc--------C-CCCCcceeec--cccCCCeeeeeeehhheee
Confidence 4566778999999999999999999998764322 000 0 0111111111 2799999999999999999
Q ss_pred EeCCcEEEEEcCCCcE------EEEE--eC-----CCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCC
Q 004924 455 ASGGKISIFSLETFQT------LATF--AN-----PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN 520 (723)
Q Consensus 455 ~sdg~I~vwd~~~~~~------~~~~--~~-----~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~ 520 (723)
|+||.|+-|....... +... .. .-..|+++...|.. -++.++.|+.++-||+++|+..+.++||+.
T Consensus 78 ~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD 157 (325)
T KOG0649|consen 78 GGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD 157 (325)
T ss_pred ccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc
Confidence 9999999998754221 1111 11 12467889999888 666666899999999999999999999999
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeee---eecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEE
Q 004924 521 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYE 597 (723)
Q Consensus 521 ~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~---~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd 597 (723)
.|.+++--.....+++|+.||++|+||.++++......... ....|-. ..|.+++.+ ..++++|....+.+|.
T Consensus 158 YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g--~wigala~~--edWlvCGgGp~lslwh 233 (325)
T KOG0649|consen 158 YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWG--KWIGALAVN--EDWLVCGGGPKLSLWH 233 (325)
T ss_pred eeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccC--ceeEEEecc--CceEEecCCCceeEEe
Confidence 99999986656689999999999999999975433221111 1111211 456666555 5699988888999999
Q ss_pred CCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCC
Q 004924 598 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 677 (723)
Q Consensus 598 ~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d 677 (723)
+++.++...+.. ...+..+.|. ...++++++.+.|.-|.+. |.+...... + +.. ++...|+.+-
T Consensus 234 Lrsse~t~vfpi---pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~------~--s~~--c~s~s~~~~p 297 (325)
T KOG0649|consen 234 LRSSESTCVFPI---PARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPV------E--STA--CYSASWQTSP 297 (325)
T ss_pred ccCCCceEEEec---ccceeEeeee--cceEEEeccccceeeeeec-cEEEEeccC------C--ccc--eeeecccCCc
Confidence 999999888865 5667778885 4568888888889989875 433333322 2 222 3355565422
Q ss_pred CCEEEEEECCCcEEEEe
Q 004924 678 PNRIALGLTNGRVHVIE 694 (723)
Q Consensus 678 ~~~las~s~Dg~v~iWd 694 (723)
-+++..++..+.+.|+.
T Consensus 298 ~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 298 IKFISIAGFSNKLHILK 314 (325)
T ss_pred eEEEEecccceeeeeee
Confidence 35677777777887764
No 161
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.9e-19 Score=198.21 Aligned_cols=273 Identities=16% Similarity=0.184 Sum_probs=204.7
Q ss_pred eCCCeEEEEeecccCCCCceeEE-ecCCCCCCCceEEEEEeCCCCE----EEEEECCCcEEEEeccCCcccccccceeee
Q 004924 344 KSLEKSVNLKLQLINEPSECRTL-LLPDNSFGGRVVRLIYSHSGDF----LVALTQTATHKLWKWQSNKQSLEEENVNME 418 (723)
Q Consensus 344 s~dg~v~iw~~~~~~~~~~~~~~-~l~~~~h~~~V~~l~fspdg~~----las~s~dg~i~iWd~~~~~~~~g~~~~~~~ 418 (723)
+.+.++.||.+.........+.+ .+. ....-+.++|.+.|.. ||.|..||.|.+||...... +
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s~~---s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~--~------- 103 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGSLQ---SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA--N------- 103 (1049)
T ss_pred ccccccceeeecccCcccccccccccc---ccccceeeeecccCCCccceeeccccCCceEEecchhhcc--C-------
Confidence 44566777776643222211111 111 3567889999998776 88888999999999764211 0
Q ss_pred eEEEecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCcEEEEEe--CCCCCeEEEEEcCCC--
Q 004924 419 SQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-- 490 (723)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~~--~~~~~v~~l~~~p~~-- 490 (723)
....++... ..|.+.|..+.|+ +++||+|+ ||.|.|||+..-+.-.++. .....|.+++|+..-
T Consensus 104 ------~~~~~la~~--~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqh 175 (1049)
T KOG0307|consen 104 ------ASEEVLATK--SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSH 175 (1049)
T ss_pred ------cchHHHhhh--cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhH
Confidence 011111111 1699999999999 77999999 9999999998754443332 345689999999876
Q ss_pred eEEEEECCCcEEEEeCCCCcEEEEEcCcCC--cEEEEEEcCCC-CEEEEEeCCC---cEEEEeCCCCceeeceeeeeeec
Q 004924 491 LFAFGFDDSSILVHCPCTKKTKAKLKGHQN--RITCLAYSLSL-NVLVSSGADA---QLCVWDAVGWKKLCSKFLHSFQT 564 (723)
Q Consensus 491 ~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~--~i~~l~~spdg-~~l~s~s~dg---~I~vwd~~~~~~~~~~~l~~~~~ 564 (723)
.|++++.+|.+.|||++..+.+-.+..+.+ .+..+.|+|++ ..+++++.|. .|.+||++.- ..+++ +..
T Consensus 176 ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a----ssP~k-~~~ 250 (1049)
T KOG0307|consen 176 ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA----SSPLK-ILE 250 (1049)
T ss_pred HhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc----CCchh-hhc
Confidence 889999999999999999888877766554 47789999987 4577776654 5999999863 24555 446
Q ss_pred CCCCCCCCeEEEEEccCC-CEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCc-EEEEEeCCCcEEEEE
Q 004924 565 GLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFD 641 (723)
Q Consensus 565 ~~~~~~~~v~~l~~spdg-~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~-~l~sgs~dg~I~iwd 641 (723)
+|. ..|.++.|++.+ .++++ +.|++|.+|+.++++.+..+.. ....+..+.|+|... .+++++-||.|.|+.
T Consensus 251 ~H~---~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 251 GHQ---RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--QGNWCFDVQWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred ccc---cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--CCcceeeeeecCCCcchhhhheeccceeeee
Confidence 777 799999999987 66666 5999999999999999998864 478999999999765 788899999999999
Q ss_pred CCCCc
Q 004924 642 TSTLE 646 (723)
Q Consensus 642 ~~~~~ 646 (723)
+.++.
T Consensus 326 l~~~~ 330 (1049)
T KOG0307|consen 326 LQGTD 330 (1049)
T ss_pred eecCC
Confidence 88654
No 162
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=2e-17 Score=159.36 Aligned_cols=274 Identities=16% Similarity=0.161 Sum_probs=200.0
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeecccCC----C-----CceeEEecCCCCCCCceEEEEEe-------CCCCEEEEEECC
Q 004924 332 TSLPDADSAVCAKSLEKSVNLKLQLINE----P-----SECRTLLLPDNSFGGRVVRLIYS-------HSGDFLVALTQT 395 (723)
Q Consensus 332 ~~spdg~~la~~s~dg~v~iw~~~~~~~----~-----~~~~~~~l~~~~h~~~V~~l~fs-------pdg~~las~s~d 395 (723)
.+||||..|.+-+.|+.+++|++....- + .....++++ ....|...+|- |+..++|+.+.+
T Consensus 56 kWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~---eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 56 KWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ---EGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred eeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEec---cCCEEEEEEeeeccccCCCccceeeecccc
Confidence 3899999999999999999999863210 0 011112222 24567777775 678899999999
Q ss_pred CcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEeCCcEEEEEc-CCCcEEE
Q 004924 396 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSL-ETFQTLA 472 (723)
Q Consensus 396 g~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~sdg~I~vwd~-~~~~~~~ 472 (723)
.-|.+||.-+ |+...++ +.||.. ..-.+-.+++|+ |.+|++|....|+++|+ +.|....
T Consensus 133 ~PIh~wdaft-----G~lraSy--~~ydh~-----------de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~ 194 (406)
T KOG2919|consen 133 QPIHLWDAFT-----GKLRASY--RAYDHQ-----------DEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCP 194 (406)
T ss_pred Cceeeeeccc-----cccccch--hhhhhH-----------HhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCc
Confidence 9999999874 4433333 123311 011234589999 89999988999999999 4554322
Q ss_pred EEe-------CCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeC-CCc
Q 004924 473 TFA-------NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DAQ 542 (723)
Q Consensus 473 ~~~-------~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~-dg~ 542 (723)
.+. +..+-+.|++|+|.. .+++|+...++-||.-..+.++..+.+|.+.|+.+.|.++|+.|.+|+. |-.
T Consensus 195 vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dk 274 (406)
T KOG2919|consen 195 VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDK 274 (406)
T ss_pred chhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCe
Confidence 221 335678999999988 8999999999999998889999999999999999999999999999885 778
Q ss_pred EEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCC-CceeEEecCCCCCCCeEEEE
Q 004924 543 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT-LNHTSQLVPDKMDLPITYAT 620 (723)
Q Consensus 543 I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~-~~~~~~~~~~~h~~~v~~l~ 620 (723)
|-.||++.-. .++..+. .|...+..=.-....|++++|++| .+|.|++||+.+ +..+..+. .+...+..++
T Consensus 275 Il~WDiR~~~----~pv~~L~-rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~--~~sd~vNgvs 347 (406)
T KOG2919|consen 275 ILCWDIRYSR----DPVYALE-RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG--NYSDTVNGVS 347 (406)
T ss_pred EEEEeehhcc----chhhhhh-hhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc--ccccccccee
Confidence 9999998732 2333222 222101222234557899999996 999999999987 66555553 4588899999
Q ss_pred EeeCCcEEEEEeC
Q 004924 621 YSCDGKCIYVSCK 633 (723)
Q Consensus 621 ~spdg~~l~sgs~ 633 (723)
++|--..+++++.
T Consensus 348 lnP~mpilatssG 360 (406)
T KOG2919|consen 348 LNPIMPILATSSG 360 (406)
T ss_pred cCcccceeeeccC
Confidence 9999888887764
No 163
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.79 E-value=2e-15 Score=163.92 Aligned_cols=326 Identities=21% Similarity=0.295 Sum_probs=240.7
Q ss_pred ccccCCCCCEEEEEeCCCeEEEEeecccCCCC-ceeEEecCCCCCCCceEEEEE-eCCCC-EEEEEEC-CCcEEEEeccC
Q 004924 330 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPS-ECRTLLLPDNSFGGRVVRLIY-SHSGD-FLVALTQ-TATHKLWKWQS 405 (723)
Q Consensus 330 ~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~-~~~~~~l~~~~h~~~V~~l~f-spdg~-~las~s~-dg~i~iWd~~~ 405 (723)
...+.+.+..++.++.|+.+.+|+.... . ....+. + .+...+..+.+ ++++. +++..+. |+.+.+|+...
T Consensus 70 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 143 (466)
T COG2319 70 SIAFSPDGELLLSGSSDGTIKLWDLDNG---EKLIKSLE--G-LHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLST 143 (466)
T ss_pred EEEECCCCcEEEEecCCCcEEEEEcCCC---ceeEEEEe--c-cCCCceeeEEEECCCcceEEeccCCCCccEEEEEecC
Confidence 3447778888999999999999999852 2 233332 1 02236777777 88888 5555455 89999999763
Q ss_pred CcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEEcCCCcEEEEEeCCCCCe
Q 004924 406 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIA 481 (723)
Q Consensus 406 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~~~~v 481 (723)
. .. ...... .|...|.+++|+ +..+++++ ++.+++|++.++..+..+.+|...+
T Consensus 144 ~----~~----------------~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 201 (466)
T COG2319 144 P----GK----------------LIRTLE--GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV 201 (466)
T ss_pred C----Ce----------------EEEEEe--cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCce
Confidence 0 00 111111 689999999999 66777776 8999999999988999999999999
Q ss_pred EEEEEcCCC-eEEEE-ECCCcEEEEeCCCCcEEE-EEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeecee
Q 004924 482 TYFILLPQD-LFAFG-FDDSSILVHCPCTKKTKA-KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 558 (723)
Q Consensus 482 ~~l~~~p~~-~l~sg-s~dg~I~iwd~~~~~~~~-~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~ 558 (723)
.+++|+|++ .++++ +.|+.|++||...+.... .+.+|.... ...|+|++..+++++.|+.+++||...... .
T Consensus 202 ~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----~ 276 (466)
T COG2319 202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS----L 276 (466)
T ss_pred EEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc----E
Confidence 999999998 45544 999999999988888888 688888775 448999998899999999999999987532 1
Q ss_pred eeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEE-eCCCc
Q 004924 559 LHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGH 636 (723)
Q Consensus 559 l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sg-s~dg~ 636 (723)
+..+ .+|. ..+.++.|+|++..+++ +.|+.+.+||..+...........|...+..+.|.+++..++.+ ..|+.
T Consensus 277 ~~~~-~~~~---~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 352 (466)
T COG2319 277 LRTL-SGHS---SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGT 352 (466)
T ss_pred EEEE-ecCC---ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCc
Confidence 2222 4454 78999999998888887 56788999999887766555422356678999994343555555 68899
Q ss_pred EEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEE-EECCCcEEEEecCCCceeeecC
Q 004924 637 VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL-GLTNGRVHVIEPLESEVEWGKL 705 (723)
Q Consensus 637 I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las-~s~Dg~v~iWd~~~~~~~w~~~ 705 (723)
+.+|+............ ... +..+.+++ + ..+.. ++.++.+.+|+...........
T Consensus 353 ~~~~~~~~~~~~~~~~~---------~~~--~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (466)
T COG2319 353 IRLWDLRTGKPLKTLEG---------HSN--VLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLD 409 (466)
T ss_pred EEeeecCCCceeEEecC---------Cce--EEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeecc
Confidence 99999998872222211 111 44888888 7 55555 8899999999998877654443
No 164
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.79 E-value=3e-18 Score=168.26 Aligned_cols=207 Identities=13% Similarity=0.107 Sum_probs=159.8
Q ss_pred CCCCCeEEEEEcCCC---eEEEEECCCcEEEEeCCC----------------CcEEEEEcCcCCcEEEEEEcCCC-CEEE
Q 004924 476 NPPPIATYFILLPQD---LFAFGFDDSSILVHCPCT----------------KKTKAKLKGHQNRITCLAYSLSL-NVLV 535 (723)
Q Consensus 476 ~~~~~v~~l~~~p~~---~l~sgs~dg~I~iwd~~~----------------~~~~~~l~~~~~~i~~l~~spdg-~~l~ 535 (723)
.|.+.+..+..++-+ ..++=+..|.|.||++.. .+++.++.+|...=+.+.|||-. ..++
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 455555555555543 666777889999999752 25678889999999999999932 2478
Q ss_pred EEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCC-EEEE-EcCCcEEEEECCCCceeEEecCCCCC
Q 004924 536 SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQIDVYEAPTLNHTSQLVPDKMD 613 (723)
Q Consensus 536 s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~-~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~ 613 (723)
+|..-+.|++|...+|.-.. -+..+.+|. ..|-.++|||... .|++ +.||+|+|||++.+.....+....|.
T Consensus 229 sGDc~~~I~lw~~~~g~W~v---d~~Pf~gH~---~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~ 302 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKV---DQRPFTGHT---KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHN 302 (440)
T ss_pred cCccccceEeeeeccCceee---cCccccccc---cchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccC
Confidence 88888999999998864221 122244577 7999999999864 5555 59999999999988433333335789
Q ss_pred CCeEEEEEeeCCcEEEEEeCCCcEEEEECCC---CcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcE
Q 004924 614 LPITYATYSCDGKCIYVSCKSGHVKVFDTST---LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRV 690 (723)
Q Consensus 614 ~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~---~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v 690 (723)
+.|+-+.|+.+..+||+|+.||+++|||+++ ++++..++. |..+|+ ++.|+|.+...|+++|.|..|
T Consensus 303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~--------Hk~pIt--sieW~p~e~s~iaasg~D~Qi 372 (440)
T KOG0302|consen 303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY--------HKAPIT--SIEWHPHEDSVIAASGEDNQI 372 (440)
T ss_pred CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe--------ccCCee--EEEeccccCceEEeccCCCcE
Confidence 9999999999888999999999999999875 566677764 355666 999999888899999999999
Q ss_pred EEEecCCC
Q 004924 691 HVIEPLES 698 (723)
Q Consensus 691 ~iWd~~~~ 698 (723)
.|||+.-.
T Consensus 373 tiWDlsvE 380 (440)
T KOG0302|consen 373 TIWDLSVE 380 (440)
T ss_pred EEEEeecc
Confidence 99998643
No 165
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.79 E-value=1.1e-17 Score=174.36 Aligned_cols=271 Identities=13% Similarity=0.184 Sum_probs=200.0
Q ss_pred ceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEE
Q 004924 376 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF 453 (723)
Q Consensus 376 ~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~ 453 (723)
.|..++|-|||..|+.+..| .+.+|| ++.|..+.++. +|.+.|.|++|+ |+.+|
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD---------------------~ndG~llqtLK--gHKDtVycVAys~dGkrFA 69 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYD---------------------TSDGTLLQPLK--GHKDTVYCVAYAKDGKRFA 69 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEe---------------------CCCcccccccc--cccceEEEEEEccCCceec
Confidence 88999999999988776554 455555 45555555555 899999999999 99999
Q ss_pred EEe-CCcEEEEEcCCCcEEEEEe-CCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCC
Q 004924 454 SAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS 530 (723)
Q Consensus 454 s~s-dg~I~vwd~~~~~~~~~~~-~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spd 530 (723)
+|+ |..|.+|+.+- ...++ .|++.|.|+.|+|-. .+++++-. ..-+|........+ .+ ....+.+++|..|
T Consensus 70 SG~aDK~VI~W~~kl---EG~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~k-ss~R~~~CsWtnD 143 (1081)
T KOG1538|consen 70 SGSADKSVIIWTSKL---EGILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-HK-SSSRIICCSWTND 143 (1081)
T ss_pred cCCCceeEEEecccc---cceeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh-hh-hheeEEEeeecCC
Confidence 999 99999998542 22333 789999999999999 88888743 46788766543222 11 3457889999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCC-----CEEEE-EcCCcEEEEECCCCcee
Q 004924 531 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-----IHLLS-IHEGQIDVYEAPTLNHT 604 (723)
Q Consensus 531 g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg-----~~l~~-s~dg~I~vwd~~~~~~~ 604 (723)
|.+++.|-.+|+|.+-+-...+ ...+. -+.+.. .+|.+++|+|.. ..+++ -...++..+.+ +|+.+
T Consensus 144 GqylalG~~nGTIsiRNk~gEe---k~~I~-Rpgg~N---spiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~I 215 (1081)
T KOG1538|consen 144 GQYLALGMFNGTISIRNKNGEE---KVKIE-RPGGSN---SPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQI 215 (1081)
T ss_pred CcEEEEeccCceEEeecCCCCc---ceEEe-CCCCCC---CCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceee
Confidence 9999999999999988654422 12233 334444 799999999974 34444 36667777777 45544
Q ss_pred EEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEE
Q 004924 605 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 684 (723)
Q Consensus 605 ~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 684 (723)
..-+. -.....++.+.++|.|++.|+.|+.+.+|..+ |-.+.++ |..++.+| .++.+| ++++++.|
T Consensus 216 gk~r~--L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTv--------g~~D~WIW--tV~~~P-NsQ~v~~G 281 (1081)
T KOG1538|consen 216 GKDRA--LNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTV--------GEQDSWIW--TVQAKP-NSQYVVVG 281 (1081)
T ss_pred ccccc--CCCCchhheeccCCcEEEEccCCCceEEEeec-CeEEeec--------cccceeEE--EEEEcc-CCceEEEE
Confidence 32211 14455688999999999999999999999755 4444544 22355666 999999 89999999
Q ss_pred ECCCcEEEEecCCC
Q 004924 685 LTNGRVHVIEPLES 698 (723)
Q Consensus 685 s~Dg~v~iWd~~~~ 698 (723)
+.||+|--|++...
T Consensus 282 CqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 282 CQDGTIACYNLIFS 295 (1081)
T ss_pred EccCeeehhhhHHh
Confidence 99999999987543
No 166
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.78 E-value=3.3e-15 Score=162.23 Aligned_cols=312 Identities=22% Similarity=0.291 Sum_probs=230.5
Q ss_pred CCCCC-EEEEEeC-CCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEEC-CCcEEEEeccCCcccc
Q 004924 334 LPDAD-SAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSL 410 (723)
Q Consensus 334 spdg~-~la~~s~-dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~-dg~i~iWd~~~~~~~~ 410 (723)
.+++. .++..+. |+.+.+|+... ....... +.. |...|..++|+|++.++++++. |+.+++|+.....
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~~~~-~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 189 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLST---PGKLIRT-LEG--HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK--- 189 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecC---CCeEEEE-Eec--CcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc---
Confidence 56666 4555455 89999999873 0222222 333 9999999999999999999986 9999999976311
Q ss_pred cccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC-EEEEEe-CCcEEEEEcCCCcEEE-EEeCCCCCeEEEE
Q 004924 411 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLA-TFANPPPIATYFI 485 (723)
Q Consensus 411 g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~-~l~s~s-dg~I~vwd~~~~~~~~-~~~~~~~~v~~l~ 485 (723)
...... +|...|.+++|+ +. .+++++ |+.|++||...+.... .+.+|.... ...
T Consensus 190 ------------------~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~ 248 (466)
T COG2319 190 ------------------PLSTLA--GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSS 248 (466)
T ss_pred ------------------eEEeec--cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEe
Confidence 111111 588999999999 55 555546 9999999998888888 688888775 448
Q ss_pred EcCCC-eEEEEECCCcEEEEeCCCCcE-EEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeee
Q 004924 486 LLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 563 (723)
Q Consensus 486 ~~p~~-~l~sgs~dg~I~iwd~~~~~~-~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~ 563 (723)
|+|++ .+++++.|+.+++|+...... ...+.+|...+.++.|+|++..+++++.|+.+.+||..+........ .
T Consensus 249 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~ 324 (466)
T COG2319 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT----L 324 (466)
T ss_pred ECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee----e
Confidence 99999 888999999999999987664 44456788999999999988888889999999999888753222111 1
Q ss_pred cCCCCCCCCeEEEEEccCCCEEEEE--cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEE-EeCCCcEEEE
Q 004924 564 TGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV-SCKSGHVKVF 640 (723)
Q Consensus 564 ~~~~~~~~~v~~l~~spdg~~l~~s--~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s-gs~dg~I~iw 640 (723)
..|. ..+..+.+.+++..++.+ .|+.+.+|+............ ...+..+.+++ ...++. +..++.+.+|
T Consensus 325 ~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 397 (466)
T COG2319 325 KGHE---GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG---HSNVLSVSFSP-DGRVVSSGSTDGTVRLW 397 (466)
T ss_pred cccC---CceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecC---CceEEEEEECC-CCCEEEEecCCCceEEE
Confidence 2443 458889884332455553 778999999988773333321 22288899988 544444 6889999999
Q ss_pred ECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCC
Q 004924 641 DTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 641 d~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~ 697 (723)
+............. ... +....+.+ ++..+++++.++.+++|+...
T Consensus 398 ~~~~~~~~~~~~~~--------~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 398 DLSTGSLLRNLDGH--------TSR--VTSLDFSP-DGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ecccCeeeeeccCC--------CCc--EEEEEECC-CCcEEEEecCCCcEEEEeccC
Confidence 99998877666421 023 44788888 788999999999999999988
No 167
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.5e-16 Score=145.22 Aligned_cols=276 Identities=16% Similarity=0.222 Sum_probs=189.6
Q ss_pred cCCCCCEEEEEeCCCeEEEEeeccc-----CCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCc
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLI-----NEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 407 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~-----~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~ 407 (723)
.+|.+++++.|..+|+|.+..++.. +++++...+... +|.++|+.++|. ..+|++|+. |.|+-|.+....
T Consensus 18 ~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eq--ahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~ 92 (325)
T KOG0649|consen 18 ISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQ--AHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEE 92 (325)
T ss_pred hCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeecc--ccCCCeeeeeee--hhheeeccC-ceEEEeeehhhh
Confidence 7899999999999999999988742 334555544444 599999999998 445677664 999999987533
Q ss_pred ccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEE
Q 004924 408 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGKISIFSLETFQTLATFANPPPIATYF 484 (723)
Q Consensus 408 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l 484 (723)
.. ...-++|......-.- . ..-..|+++... +..+.+|+|+.+.-||+++|+..+++++|.+.+.++
T Consensus 93 es------~~~K~lwe~~~P~~~~--~--~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~v 162 (325)
T KOG0649|consen 93 ES------LATKRLWEVKIPMQVD--A--VEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSV 162 (325)
T ss_pred hh------ccchhhhhhcCccccC--c--ccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeee
Confidence 30 0011334433221110 0 122356676665 667777779999999999999999999999999999
Q ss_pred EEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCc----------CCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 004924 485 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH----------QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 553 (723)
Q Consensus 485 ~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~----------~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~ 553 (723)
.-.... .+++|+.||++++||.++++++..+... ...|.+++. +..++++|+ ...+.+|.+++.+.
T Consensus 163 v~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~ 239 (325)
T KOG0649|consen 163 VGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSES 239 (325)
T ss_pred eecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCc
Confidence 885545 9999999999999999999998877531 123555554 445777665 56789999999766
Q ss_pred eeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeC-CcEEEEEe
Q 004924 554 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD-GKCIYVSC 632 (723)
Q Consensus 554 ~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spd-g~~l~sgs 632 (723)
.+..++. ..+..+.|-.| ..++.|..+.+.-|.+ +|......... ....++..|+.. -++|-.++
T Consensus 240 t~vfpip----------a~v~~v~F~~d-~vl~~G~g~~v~~~~l-~Gvl~a~ip~~--s~~c~s~s~~~~p~k~~s~ag 305 (325)
T KOG0649|consen 240 TCVFPIP----------ARVHLVDFVDD-CVLIGGEGNHVQSYTL-NGVLQANIPVE--STACYSASWQTSPIKFISIAG 305 (325)
T ss_pred eEEEecc----------cceeEeeeecc-eEEEeccccceeeeee-ccEEEEeccCC--ccceeeecccCCceEEEEecc
Confidence 5555444 67888888754 3333466778999988 45544444322 334455555432 34555666
Q ss_pred CCCcEEEE
Q 004924 633 KSGHVKVF 640 (723)
Q Consensus 633 ~dg~I~iw 640 (723)
..+.+.|+
T Consensus 306 ~s~~~~i~ 313 (325)
T KOG0649|consen 306 FSNKLHIL 313 (325)
T ss_pred cceeeeee
Confidence 66666665
No 168
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=9.5e-16 Score=166.32 Aligned_cols=351 Identities=15% Similarity=0.136 Sum_probs=241.6
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCC---CEEEEEECCCcEEEEeccCCc
Q 004924 331 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG---DFLVALTQTATHKLWKWQSNK 407 (723)
Q Consensus 331 ~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg---~~las~s~dg~i~iWd~~~~~ 407 (723)
..+|+|++.++... +..|.||... ++.|... +++ |..++..+.+.|.. .++.+++.||+|++||+..+.
T Consensus 22 avfSnD~k~l~~~~-~~~V~VyS~~----Tg~~i~~-l~~--~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~ 93 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCT-GNFVKVYSTA----TGECITS-LED--HTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE 93 (792)
T ss_pred cccccCCcEEEEee-CCEEEEEecc----hHhhhhh-ccc--ccCccceeeecCCCccceEEEEEecCccEEEecCCCcE
Confidence 34899999888776 7889999998 5777764 776 99999999998854 478899999999999998765
Q ss_pred c-----cccccce------------ee-----------------------------------------------------
Q 004924 408 Q-----SLEEENV------------NM----------------------------------------------------- 417 (723)
Q Consensus 408 ~-----~~g~~~~------------~~----------------------------------------------------- 417 (723)
. ...+... ..
T Consensus 94 Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge 173 (792)
T KOG1963|consen 94 LLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGE 173 (792)
T ss_pred EEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCce
Confidence 4 0000000 00
Q ss_pred --------eeEEEecCCCe--eeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCC----CcEEEEEeCCCCC
Q 004924 418 --------ESQLYQPSSKL--VMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET----FQTLATFANPPPI 480 (723)
Q Consensus 418 --------~~~~~~~~~~~--~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~----~~~~~~~~~~~~~ 480 (723)
...+|...++. .........|...++|.+++ ++++|+|. ||.|.+|.--. ......+.-|...
T Consensus 174 ~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~ 253 (792)
T KOG1963|consen 174 FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDE 253 (792)
T ss_pred EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccc
Confidence 00223332211 01111112477778999999 88999998 99999996422 1234556678899
Q ss_pred eEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceee
Q 004924 481 ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 559 (723)
Q Consensus 481 v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l 559 (723)
|++++|+++| .|++|+..|.+.+|.+.+++ .+-+..-.++|..+.++||+...+....|..|.+....+.+... .+
T Consensus 254 V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~--tI 330 (792)
T KOG1963|consen 254 VNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS--TI 330 (792)
T ss_pred cceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh--hc
Confidence 9999999999 99999999999999999988 55566678899999999999999999999999998775532111 11
Q ss_pred eeeecC----CCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCC---------CCCCeEEEEEeeCC
Q 004924 560 HSFQTG----LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDK---------MDLPITYATYSCDG 625 (723)
Q Consensus 560 ~~~~~~----~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~---------h~~~v~~l~~spdg 625 (723)
..+... .....+-.+.++++|..+.++- +..|.|.+||+-+.+.+..+.... +...+++++.+..|
T Consensus 331 sgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~g 410 (792)
T KOG1963|consen 331 SGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFG 410 (792)
T ss_pred cCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccc
Confidence 111111 0001145677899995444444 799999999998877665543211 12357788888889
Q ss_pred cEEEEEeC--------C--CcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEec
Q 004924 626 KCIYVSCK--------S--GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 695 (723)
Q Consensus 626 ~~l~sgs~--------d--g~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~ 695 (723)
.+++++-. | -.+++|.......-..+......|. +.... ..+..+|......+++|.||.++||-+
T Consensus 411 s~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH---~~~~v-at~~~~~~rs~~~vta~~dg~~KiW~~ 486 (792)
T KOG1963|consen 411 SWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPH---GNAFV-ATIFLNPTRSVRCVTASVDGDFKIWVF 486 (792)
T ss_pred eEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCC---CceeE-EEEEecCcccceeEEeccCCeEEEEEE
Confidence 99998642 3 3578898776554444443333332 22222 244445534448999999999999999
Q ss_pred C
Q 004924 696 L 696 (723)
Q Consensus 696 ~ 696 (723)
.
T Consensus 487 ~ 487 (792)
T KOG1963|consen 487 T 487 (792)
T ss_pred e
Confidence 3
No 169
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.76 E-value=9.2e-17 Score=155.32 Aligned_cols=272 Identities=16% Similarity=0.148 Sum_probs=192.5
Q ss_pred EEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCC----CCEEEEEECCCcEEEEeccCCcccccccce
Q 004924 340 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS----GDFLVALTQTATHKLWKWQSNKQSLEEENV 415 (723)
Q Consensus 340 la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspd----g~~las~s~dg~i~iWd~~~~~~~~g~~~~ 415 (723)
+|+++ .+.+.+|+......-..++.+ ....|...-..++|+-| ..++|.||.-|.|+|.|+.+..+
T Consensus 58 fatvG-~~rvtiy~c~~d~~ir~lq~y--~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~------- 127 (385)
T KOG1034|consen 58 FATVG-GNRVTIYECPGDGGIRLLQSY--ADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC------- 127 (385)
T ss_pred EEEeC-CcEEEEEEECCccceeeeeec--cCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh-------
Confidence 34443 667888888752111122222 12247888888999753 46899999999999988764333
Q ss_pred eeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCcEEEEEe---CCCCCeEEEEEcC
Q 004924 416 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFA---NPPPIATYFILLP 488 (723)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~~---~~~~~v~~l~~~p 488 (723)
...+. +|..+|+.+.+. .+++++++ |..|++|++++..++..+- +|.+.|.++.|++
T Consensus 128 --------------~~~~~--ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~ 191 (385)
T KOG1034|consen 128 --------------SKNYR--GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL 191 (385)
T ss_pred --------------cccee--ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC
Confidence 22222 799999999999 56999999 9999999999999998874 8999999999999
Q ss_pred CC-eEEEEECCCcEEEEeCCCCcEEE----------------------------EEcCcCCcEEEEEEcCCCCEEEEEeC
Q 004924 489 QD-LFAFGFDDSSILVHCPCTKKTKA----------------------------KLKGHQNRITCLAYSLSLNVLVSSGA 539 (723)
Q Consensus 489 ~~-~l~sgs~dg~I~iwd~~~~~~~~----------------------------~l~~~~~~i~~l~~spdg~~l~s~s~ 539 (723)
+| +|++++.|.++++|++...+... +-.-|...|-|+.|- |+++++-+-
T Consensus 192 ~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksc 269 (385)
T KOG1034|consen 192 DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSC 269 (385)
T ss_pred CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeeccc
Confidence 99 99999999999999998432110 011255666666665 478899899
Q ss_pred CCcEEEEeC-CCCceee--------ceeeeeeecCCCCCCCCeEEE--EEccCCCEEEEE-cCCcEEEEECCCCcee--E
Q 004924 540 DAQLCVWDA-VGWKKLC--------SKFLHSFQTGLVPETTIVNHI--QFHPDQIHLLSI-HEGQIDVYEAPTLNHT--S 605 (723)
Q Consensus 540 dg~I~vwd~-~~~~~~~--------~~~l~~~~~~~~~~~~~v~~l--~~spdg~~l~~s-~dg~I~vwd~~~~~~~--~ 605 (723)
++.|..|.. +-++... ...+.++.-. ...|.-+ +|.|-+++|+.+ ..|.|++||++..++. .
T Consensus 270 enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~----~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~t 345 (385)
T KOG1034|consen 270 ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP----MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCT 345 (385)
T ss_pred CceEEEEecchhhhhhhccCCCccceeeeeEeccC----ccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCc
Confidence 999999987 2211100 0111111111 1345544 456668888886 8899999999876653 2
Q ss_pred EecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECC
Q 004924 606 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 606 ~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~ 643 (723)
++........|...+||.||..|+..++|++|.=||..
T Consensus 346 tl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 346 TLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 22222236779999999999999999999999999864
No 170
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=6.4e-17 Score=157.32 Aligned_cols=273 Identities=13% Similarity=0.146 Sum_probs=183.8
Q ss_pred CEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe----CCEEEEEe-CCcEE
Q 004924 387 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKIS 461 (723)
Q Consensus 387 ~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s----~~~l~s~s-dg~I~ 461 (723)
..+|++-++|+|++||..++ .....++ ++...++.++|. ...+.+|+ ||+|+
T Consensus 41 ~~vav~lSngsv~lyd~~tg-----~~l~~fk------------------~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr 97 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG-----QLLEEFK------------------GPPATTNGVRFISCDSPHGVISCSSDGTVR 97 (376)
T ss_pred eeEEEEecCCeEEEEeccch-----hhhheec------------------CCCCcccceEEecCCCCCeeEEeccCCeEE
Confidence 45888888999999997742 2222221 677788888887 46788888 99999
Q ss_pred EEEcCCCcEEEEEe--CCC-CCeEEEEEcCCC-eEEEEE----CCCcEEEEeCCCCcE-EEEE-cCcCCcEEEEEEcC-C
Q 004924 462 IFSLETFQTLATFA--NPP-PIATYFILLPQD-LFAFGF----DDSSILVHCPCTKKT-KAKL-KGHQNRITCLAYSL-S 530 (723)
Q Consensus 462 vwd~~~~~~~~~~~--~~~-~~v~~l~~~p~~-~l~sgs----~dg~I~iwd~~~~~~-~~~l-~~~~~~i~~l~~sp-d 530 (723)
+||+++......+. .+. .+..|++....+ .+++|. .+-.|.+||++..+. +..+ ..|...|+++.|+| +
T Consensus 98 ~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~ 177 (376)
T KOG1188|consen 98 LWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD 177 (376)
T ss_pred EEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC
Confidence 99998866554443 443 456677776666 777775 356899999998765 5544 56999999999999 4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCC--CEEEEEcCCcEEEEECCCCceeEEec
Q 004924 531 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--IHLLSIHEGQIDVYEAPTLNHTSQLV 608 (723)
Q Consensus 531 g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg--~~l~~s~dg~I~vwd~~~~~~~~~~~ 608 (723)
.+.|++||.||-|.+||++.... ....++++..+ ..|.++.|+.++ +..+.+..++..+|+++.+.+...+.
T Consensus 178 pnlLlSGSvDGLvnlfD~~~d~E-eDaL~~viN~~-----sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 178 PNLLLSGSVDGLVNLFDTKKDNE-EDALLHVINHG-----SSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred CCeEEeecccceEEeeecCCCcc-hhhHHHhhccc-----ceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 58899999999999999986321 11122222222 579999999988 54444899999999999887654443
Q ss_pred CCCC----------CCCeEEEEEeeCCcEEEEEeC-CCcEEEEECC---CCcEEEEeecccccCCCCccCccceEEEEEe
Q 004924 609 PDKM----------DLPITYATYSCDGKCIYVSCK-SGHVKVFDTS---TLELRCQINLTAYAQPGTISLELYPLVIAAH 674 (723)
Q Consensus 609 ~~~h----------~~~v~~l~~spdg~~l~sgs~-dg~I~iwd~~---~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~s 674 (723)
.+.- ...+...-...++...+.++. -|+..++-+. ++...... ....|+|..-++ ++.|.
T Consensus 252 ~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~----a~l~g~~~eiVR--~i~~~ 325 (376)
T KOG1188|consen 252 NPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEP----AILQGGHEEIVR--DILFD 325 (376)
T ss_pred CccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCcc----ccccCCcHHHHH--HHhhh
Confidence 2110 112222222224445554444 4665555443 33322211 122354566566 77777
Q ss_pred cCCCCEEEEEECCCcEEEEec
Q 004924 675 PLEPNRIALGLTNGRVHVIEP 695 (723)
Q Consensus 675 p~d~~~las~s~Dg~v~iWd~ 695 (723)
. .+.++.|||.||.+.+|..
T Consensus 326 ~-~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 326 V-KNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred c-ccceeeccCCCceEEEEec
Confidence 6 7889999999999999995
No 171
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=9.2e-17 Score=157.98 Aligned_cols=300 Identities=12% Similarity=0.061 Sum_probs=205.5
Q ss_pred CCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--C
Q 004924 372 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 449 (723)
Q Consensus 372 ~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~ 449 (723)
+|.+.|+++.||.+|++|++|+.|..+++|++..... ..+.+.+... -..|.+.|.|++|. +
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~---------------~k~~KPI~~~-~~~H~SNIF~L~F~~~N 117 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV---------------RKTPKPIGVM-EHPHRSNIFSLEFDLEN 117 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHh---------------hcCCCCceec-cCccccceEEEEEccCC
Confidence 4999999999999999999999999999999863211 0111111111 11477999999999 6
Q ss_pred CEEEEEe-CCcEEEEEcCCCcEEEEEeC--CCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCc-EEEE--EcCcCCcE
Q 004924 450 SHLFSAS-GGKISIFSLETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK-TKAK--LKGHQNRI 522 (723)
Q Consensus 450 ~~l~s~s-dg~I~vwd~~~~~~~~~~~~--~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~-~~~~--l~~~~~~i 522 (723)
..+++|+ +++|...|+++.+.+..+.. ..+.|..+..+|.. .|++.+.+|.|.+||.+... .+.. ........
T Consensus 118 ~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F 197 (609)
T KOG4227|consen 118 RFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNF 197 (609)
T ss_pred eeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccc
Confidence 6788888 99999999999888877753 33589999999999 99999999999999998754 2222 22345567
Q ss_pred EEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeeceeeee--eecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEEC
Q 004924 523 TCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHS--FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA 598 (723)
Q Consensus 523 ~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~--~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~ 598 (723)
..+.|+|.. .+|++.+..+.+.+||++... .++.. ...+-......-+++.|+|+|..+.+- ....-.+||+
T Consensus 198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~----~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~ 273 (609)
T KOG4227|consen 198 YTAEFHPETPALILVNSETGGPNVFDRRMQA----RPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDF 273 (609)
T ss_pred eeeeecCCCceeEEeccccCCCCceeecccc----chHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeee
Confidence 788999955 568888889999999998632 11110 011100000234678999999988874 4445567888
Q ss_pred CCCceeEEecCC-CC-----CCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEE----------------Eeecccc
Q 004924 599 PTLNHTSQLVPD-KM-----DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC----------------QINLTAY 656 (723)
Q Consensus 599 ~~~~~~~~~~~~-~h-----~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~----------------~~~~~~~ 656 (723)
.+.++. .++.. .. ...+.+++|--|- .+++|+.+=.|++|.+....... .+...-.
T Consensus 274 ~S~R~~-V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~ 351 (609)
T KOG4227|consen 274 ISQRCF-VLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELT 351 (609)
T ss_pred ecccce-eEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeE
Confidence 765542 22221 11 2345667776444 48999999999999986321110 1111111
Q ss_pred cCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCC
Q 004924 657 AQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 657 ~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~ 697 (723)
+..||.+ - +..|.|+| ..++|++.|-...++||....
T Consensus 352 VLrGHRS-v--~NQVRF~~-H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 352 VLRGHRS-V--PNQVRFSQ-HNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred EEecccc-c--ccceeecC-CcceEeccchhhheecccccc
Confidence 2234422 2 34899999 678999999999999998643
No 172
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=2.2e-16 Score=172.81 Aligned_cols=299 Identities=13% Similarity=0.078 Sum_probs=207.3
Q ss_pred ccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeC--CCCEEEEEECCCcEEEEeccC
Q 004924 328 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQTATHKLWKWQS 405 (723)
Q Consensus 328 ~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fsp--dg~~las~s~dg~i~iWd~~~ 405 (723)
.....+.|=...++++.....|++||.+. ...+..+.. +..-...|+.+.+-. |...+++|+.||.|+||+-..
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~---~~~l~~F~n-~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEK---GRLLNGFDN-GAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEeccc---CceeccccC-CCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 34455777778899998889999999985 222222211 111356889998876 456899999999999998442
Q ss_pred CcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEe-CCCCCe
Q 004924 406 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIA 481 (723)
Q Consensus 406 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~-~~~~~v 481 (723)
.....-+. +.-|..-++.... ..+.=.-+.|. ..+|+++| -..|+|||.....+...+. +....|
T Consensus 1143 ~~~~~~eL-----VTaw~~Ls~~~~~------~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~v 1211 (1387)
T KOG1517|consen 1143 DKWKKPEL-----VTAWSSLSDQLPG------ARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLV 1211 (1387)
T ss_pred cccCCcee-----EEeeccccccCcc------CCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccc
Confidence 21100011 1235444433321 12222345677 55555555 6899999999888887776 445567
Q ss_pred EEEEEcCC-C-eEEEEECCCcEEEEeCCCC---cEEEEEcCcCCc--EEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCce
Q 004924 482 TYFILLPQ-D-LFAFGFDDSSILVHCPCTK---KTKAKLKGHQNR--ITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKK 553 (723)
Q Consensus 482 ~~l~~~p~-~-~l~sgs~dg~I~iwd~~~~---~~~~~l~~~~~~--i~~l~~spdg~-~l~s~s~dg~I~vwd~~~~~~ 553 (723)
+++.-+-. | .+++|..||.|++||.+.. ..+...+.|+.. |..+.+.+.|- .|++|+.||.|++||++....
T Consensus 1212 TaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~ 1291 (1387)
T KOG1517|consen 1212 TALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK 1291 (1387)
T ss_pred eeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc
Confidence 77665433 4 9999999999999998754 346677788877 99999999775 499999999999999998422
Q ss_pred eeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCC-----CCCCCeEEEEEeeCCcEE
Q 004924 554 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD-----KMDLPITYATYSCDGKCI 628 (723)
Q Consensus 554 ~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~-----~h~~~v~~l~~spdg~~l 628 (723)
..... +...-. ..+..+++..+++...+|+|+.+.|.||++ .|+.+..++.. ...+.+.+++|+|---.+
T Consensus 1292 e~~~~---iv~~~~-yGs~lTal~VH~hapiiAsGs~q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~ll 1366 (1387)
T KOG1517|consen 1292 ETFLT---IVAHWE-YGSALTALTVHEHAPIIASGSAQLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLL 1366 (1387)
T ss_pred cccce---eeeccc-cCccceeeeeccCCCeeeecCcceEEEEec-ChhhhcccccCcccccCcCCCcceeeecchhHhh
Confidence 11111 111110 003589999999999999976699999999 45555544322 125678999999999999
Q ss_pred EEEeCCCcEEEEECCCCc
Q 004924 629 YVSCKSGHVKVFDTSTLE 646 (723)
Q Consensus 629 ~sgs~dg~I~iwd~~~~~ 646 (723)
|+|+.|.+|.||....++
T Consensus 1367 AaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1367 AAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhccCCceEEEeecCCcC
Confidence 999999999999887654
No 173
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.75 E-value=1.8e-16 Score=150.54 Aligned_cols=213 Identities=17% Similarity=0.168 Sum_probs=154.2
Q ss_pred EEEEEe-CCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcE-EEEEc-----CcCCcEEEEEEcC--CCCEEEEEeC
Q 004924 470 TLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLK-----GHQNRITCLAYSL--SLNVLVSSGA 539 (723)
Q Consensus 470 ~~~~~~-~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~-~~~l~-----~~~~~i~~l~~sp--dg~~l~s~s~ 539 (723)
++..+. .+-+.+.|+.|.|++ .+++-. |..|.+|++..+.. +..+. ++....++-+|+| +|+.+++. .
T Consensus 114 ~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~ 191 (370)
T KOG1007|consen 114 CVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-S 191 (370)
T ss_pred HhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-C
Confidence 334443 344578999999999 777665 88999999988765 33332 2556778889998 67777665 5
Q ss_pred CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE--EcCCcEEEEECCCC-ceeEEecCCCCCCCe
Q 004924 540 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTL-NHTSQLVPDKMDLPI 616 (723)
Q Consensus 540 dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~--s~dg~I~vwd~~~~-~~~~~~~~~~h~~~v 616 (723)
|+++..||+++. .....+...|. ..|..+.|+|+.+++++ |.||.|++||.+.- .++..+. +|...|
T Consensus 192 d~tl~~~D~RT~-----~~~~sI~dAHg---q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~--~HsHWv 261 (370)
T KOG1007|consen 192 DSTLQFWDLRTM-----KKNNSIEDAHG---QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP--GHSHWV 261 (370)
T ss_pred CCcEEEEEccch-----hhhcchhhhhc---ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC--CCceEE
Confidence 899999999984 33344667776 68999999999877665 48899999999864 4555554 679999
Q ss_pred EEEEEeeC-CcEEEEEeCCCcEEEEECCCCcEEEEee---------------cccccCCC------CccCccceEEEEEe
Q 004924 617 TYATYSCD-GKCIYVSCKSGHVKVFDTSTLELRCQIN---------------LTAYAQPG------TISLELYPLVIAAH 674 (723)
Q Consensus 617 ~~l~~spd-g~~l~sgs~dg~I~iwd~~~~~~~~~~~---------------~~~~~~~g------~~~~~v~~~~v~~s 674 (723)
+++.|.|. .+++++|+.|..|.+|...+-.....+. .+..++.| -|...|+ +++|+
T Consensus 262 W~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY--~~aWS 339 (370)
T KOG1007|consen 262 WAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVY--ALAWS 339 (370)
T ss_pred EEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceE--EEeec
Confidence 99999985 4678899999999999865432111110 00111111 1344566 99999
Q ss_pred cCCCCEEEEEECCCcEEEEecC
Q 004924 675 PLEPNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 675 p~d~~~las~s~Dg~v~iWd~~ 696 (723)
..|+-.+|+-|.||.+.|=.+.
T Consensus 340 sadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 340 SADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cCCCeeEEEeccCceEEeecCC
Confidence 9888899999999999886663
No 174
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.9e-17 Score=167.66 Aligned_cols=292 Identities=14% Similarity=0.173 Sum_probs=216.2
Q ss_pred CCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---
Q 004924 372 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 448 (723)
Q Consensus 372 ~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--- 448 (723)
.|.+.|..|.|+..|..|++||.|..|.+|||..... ...+ ..+|...|..-.|-
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~-----~l~f-----------------~SGH~~NvfQaKFiP~s 197 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP-----KLSF-----------------ESGHCNNVFQAKFIPFS 197 (559)
T ss_pred CCCCccceeeecccCceeeccCccceEEeehhhccCc-----cccc-----------------ccccccchhhhhccCCC
Confidence 3999999999999999999999999999999885322 1111 11577777665555
Q ss_pred -CCEEEEEe-CCcEEEEEcC-CCcEE--EEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEEEEEc---Cc
Q 004924 449 -GSHLFSAS-GGKISIFSLE-TFQTL--ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK---GH 518 (723)
Q Consensus 449 -~~~l~s~s-dg~I~vwd~~-~~~~~--~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~~l~---~~ 518 (723)
...+++++ ||.|++=.+. ++.+. ..+..|.+.|.-++.-|+. .|.+++.|+.+.-+|++++.+...+. .+
T Consensus 198 ~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~ 277 (559)
T KOG1334|consen 198 GDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREAD 277 (559)
T ss_pred CCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccC
Confidence 56788888 9999987764 34333 4455899999999999998 89999999999999999876654442 22
Q ss_pred CC---cEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCcee------eceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE
Q 004924 519 QN---RITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKL------CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI 588 (723)
Q Consensus 519 ~~---~i~~l~~spdg~-~l~s~s~dg~I~vwd~~~~~~~------~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s 588 (723)
.. ..+.++.+|... .+++++.|..+++||.+.-... ...+..++... .+ ..|++++++.++.-++++
T Consensus 278 ~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d-~~--v~ITgl~Ysh~~sElLaS 354 (559)
T KOG1334|consen 278 EKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVED-DP--VNITGLVYSHDGSELLAS 354 (559)
T ss_pred CccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcccccc-Cc--ccceeEEecCCccceeee
Confidence 33 567888898654 7999999999999998763221 11111212221 12 679999999887666665
Q ss_pred -cCCcEEEEECCC--C----------ceeEE-ecCCCCCCCeEEEEE-eeCCcEEEEEeCCCcEEEEECCCCcEEEEeec
Q 004924 589 -HEGQIDVYEAPT--L----------NHTSQ-LVPDKMDLPITYATY-SCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 653 (723)
Q Consensus 589 -~dg~I~vwd~~~--~----------~~~~~-~~~~~h~~~v~~l~~-spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 653 (723)
.|-.|+++.-.. | ..+.. ++++.....|-.+.| .|...|+++|+.-|.|.||+-.+++++..+.+
T Consensus 355 YnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg 434 (559)
T KOG1334|consen 355 YNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG 434 (559)
T ss_pred ecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc
Confidence 888999995432 2 12222 554444556778875 68999999999999999999999998887763
Q ss_pred ccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 654 TAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 654 ~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
. .+- |.|+.-|| .-.+||++|-|..|+||.+.+.+
T Consensus 435 D--------r~V--VNCLEpHP-~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 435 D--------RHV--VNCLEPHP-HLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred c--------cce--EeccCCCC-CCchhhccCCccceeeecCCccc
Confidence 1 223 45999999 66799999999999999996554
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=3.3e-16 Score=154.78 Aligned_cols=230 Identities=13% Similarity=0.144 Sum_probs=170.3
Q ss_pred CCCCCceEEEEEeC-CCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-
Q 004924 371 NSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 448 (723)
Q Consensus 371 ~~h~~~V~~l~fsp-dg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s- 448 (723)
.||+++|..++|+| +...+||||.|.+|.||.+..+.. ....+ ..+..+ .+|...|.-++|+
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l-----~~~lt---------epvv~L--~gH~rrVg~V~wHP 141 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGL-----TRDLT---------EPVVEL--YGHQRRVGLVQWHP 141 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCccc-----ccCcc---------cceEEE--eecceeEEEEeecc
Confidence 46999999999999 567899999999999999875332 11110 111111 1799999999999
Q ss_pred --CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCC-cEE
Q 004924 449 --GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN-RIT 523 (723)
Q Consensus 449 --~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~-~i~ 523 (723)
.+.|++++ |.+|.+||+.+|+.+-++. |.+.|.++.|+.|| ++++.+.|+.|+|||.++++.+..-.+|.+ .-.
T Consensus 142 tA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~ 220 (472)
T KOG0303|consen 142 TAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPA 220 (472)
T ss_pred cchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcc
Confidence 77888887 9999999999999988887 99999999999999 999999999999999999999988877765 345
Q ss_pred EEEEcCCCCEEEEEe---CCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E-cCCcEEEEEC
Q 004924 524 CLAYSLSLNVLVSSG---ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEA 598 (723)
Q Consensus 524 ~l~~spdg~~l~s~s---~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~dg~I~vwd~ 598 (723)
.+.|-.+|..+-+|- .+..+-+||..+-+. ...+.++... ..|.---|.+|...++. | .|+.|+-|.+
T Consensus 221 Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~e--P~~~~elDtS-----nGvl~PFyD~dt~ivYl~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 221 RAIFLASGKIFTTGFSRMSERQIALWDPNNLEE--PIALQELDTS-----NGVLLPFYDPDTSIVYLCGKGDSSIRYFEI 293 (472)
T ss_pred eeEEeccCceeeeccccccccceeccCcccccC--cceeEEeccC-----CceEEeeecCCCCEEEEEecCCcceEEEEe
Confidence 667888888555543 477899999876321 1122222222 56777778899988887 5 8999999999
Q ss_pred CCCceeEEecC-CCCCCCeEEEEEeeC
Q 004924 599 PTLNHTSQLVP-DKMDLPITYATYSCD 624 (723)
Q Consensus 599 ~~~~~~~~~~~-~~h~~~v~~l~~spd 624 (723)
.+..+...+.. -....+-..+.|-|.
T Consensus 294 t~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 294 TNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred cCCCceeEEecccccCCcccccccccc
Confidence 76553222211 011344455666654
No 176
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.73 E-value=9.3e-17 Score=150.84 Aligned_cols=282 Identities=15% Similarity=0.085 Sum_probs=190.6
Q ss_pred ceeeccCCCC-CCceeeeCCCcccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCC
Q 004924 307 PLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS 385 (723)
Q Consensus 307 ~~~~~~~h~~-v~s~~~~~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspd 385 (723)
|.-.+.+|.+ +.|.+|..+ .++.++..-|.|.+|++.+. .....+++ .|...|+.+.--|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~------------~rL~sg~~~G~V~~w~lqt~---r~~~~~r~---~g~~~it~lq~~p~ 67 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQAN------------ERLMSGLSVGIVKMWVLQTE---RDLPLIRL---FGRLFITNLQSIPN 67 (323)
T ss_pred CeeEeccccchheehhhccc------------hhhhcccccceEEEEEeecC---ccchhhhh---hccceeeceeecCC
Confidence 3334446666 777776544 34788888999999999863 22222221 26788999999898
Q ss_pred CCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-----------CCEEEE
Q 004924 386 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----------GSHLFS 454 (723)
Q Consensus 386 g~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-----------~~~l~s 454 (723)
+. +.+-+.|+.+.+|++..... . . -|+-.++++.|. ...++.
T Consensus 68 d~-l~tqgRd~~L~lw~ia~s~~-----i----------------~-----i~Si~~nslgFCrfSl~~~~k~~eqll~y 120 (323)
T KOG0322|consen 68 DS-LDTQGRDPLLILWTIAYSAF-----I----------------S-----IHSIVVNSLGFCRFSLVKKPKNSEQLLEY 120 (323)
T ss_pred cc-hhhcCCCceEEEEEccCcce-----E----------------E-----EeeeeccccccccceeccCCCcchhheec
Confidence 54 78999999999999763211 0 0 122222222222 011222
Q ss_pred EeCC--cEEEEEcCCCcEEEEEe----CCCCCeEEEEEcCC-C---eEEEEECCCcEEEEeCCCCcEEE----------E
Q 004924 455 ASGG--KISIFSLETFQTLATFA----NPPPIATYFILLPQ-D---LFAFGFDDSSILVHCPCTKKTKA----------K 514 (723)
Q Consensus 455 ~sdg--~I~vwd~~~~~~~~~~~----~~~~~v~~l~~~p~-~---~l~sgs~dg~I~iwd~~~~~~~~----------~ 514 (723)
-+.| .+.+-|......+.... +..+.+.|..|..+ + .+++|..+|.|.+||+.++..+. .
T Consensus 121 p~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~ 200 (323)
T KOG0322|consen 121 PSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESP 200 (323)
T ss_pred CCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccc
Confidence 1111 12222222212222211 33456777775433 3 77889999999999999984443 3
Q ss_pred EcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--ceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCC
Q 004924 515 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW--KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG 591 (723)
Q Consensus 515 l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~--~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg 591 (723)
...|..+|.++.+.+....=++|+.+..+..|++... .......+. ..+ ..|..+.+-||++.+|+ |.|+
T Consensus 201 ~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~---lkn----pGv~gvrIRpD~KIlATAGWD~ 273 (323)
T KOG0322|consen 201 NASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEIT---LKN----PGVSGVRIRPDGKILATAGWDH 273 (323)
T ss_pred hhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEE---ecC----CCccceEEccCCcEEeecccCC
Confidence 3458899999999987777788888889999988642 111111111 112 46889999999999999 7999
Q ss_pred cEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEEC
Q 004924 592 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 642 (723)
Q Consensus 592 ~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~ 642 (723)
+||||+.++.+++..++. |...|.+++|+|+...+|+++.|+.|.+|++
T Consensus 274 RiRVyswrtl~pLAVLky--Hsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 274 RIRVYSWRTLNPLAVLKY--HSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cEEEEEeccCCchhhhhh--hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999988874 6899999999999999999999999999986
No 177
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=9.8e-15 Score=154.64 Aligned_cols=271 Identities=13% Similarity=0.136 Sum_probs=174.0
Q ss_pred EEEEeCCCeEEEEeecccCCCCceeEEe-cCCCCCCCceEEEEEeCCCCEEEEEEC-CCcEEEEeccCCcccccccceee
Q 004924 340 AVCAKSLEKSVNLKLQLINEPSECRTLL-LPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNM 417 (723)
Q Consensus 340 la~~s~dg~v~iw~~~~~~~~~~~~~~~-l~~~~h~~~V~~l~fspdg~~las~s~-dg~i~iWd~~~~~~~~g~~~~~~ 417 (723)
.++...++.|.+|++.. .+...... ++ +.+....++++|+|++|++++. ++.|.+|++... |...
T Consensus 5 y~~~~~~~~I~~~~~~~---~g~l~~~~~~~---~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~----g~l~--- 71 (330)
T PRK11028 5 YIASPESQQIHVWNLNH---EGALTLLQVVD---VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD----GALT--- 71 (330)
T ss_pred EEEcCCCCCEEEEEECC---CCceeeeeEEe---cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCC----CceE---
Confidence 34446789999999963 23322211 22 3466788999999999877654 788988987521 1110
Q ss_pred eeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEEcCC-Cc---EEEEEeCCCCCeEEEEEcCC
Q 004924 418 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-FQ---TLATFANPPPIATYFILLPQ 489 (723)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s--dg~I~vwd~~~-~~---~~~~~~~~~~~v~~l~~~p~ 489 (723)
..... ........++++ ++++++++ ++.|.+|++.+ +. .+..+. +.....+++++|+
T Consensus 72 -----------~~~~~---~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~ 136 (330)
T PRK11028 72 -----------FAAES---PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPD 136 (330)
T ss_pred -----------Eeeee---cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCC
Confidence 00100 122345678888 88888877 78999999964 32 223222 2234567889999
Q ss_pred C-eE-EEEECCCcEEEEeCCCCcEEE-------EEcCcCCcEEEEEEcCCCCEEEEEeC-CCcEEEEeCCC--Cceeece
Q 004924 490 D-LF-AFGFDDSSILVHCPCTKKTKA-------KLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVG--WKKLCSK 557 (723)
Q Consensus 490 ~-~l-~sgs~dg~I~iwd~~~~~~~~-------~l~~~~~~i~~l~~spdg~~l~s~s~-dg~I~vwd~~~--~~~~~~~ 557 (723)
+ .+ ++...++.|.+||+.+...+. ... .......+.|+|+|++++++.. +++|.+||++. ++.....
T Consensus 137 g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 137 NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEE
Confidence 9 55 455567899999997632221 111 1234568999999999988876 89999999974 3221111
Q ss_pred eeeeeecCCCCCCCCeEEEEEccCCCEEEEE--cCCcEEEEECCCCc----eeEEecCCCCCCCeEEEEEeeCCcEEEEE
Q 004924 558 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCDGKCIYVS 631 (723)
Q Consensus 558 ~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s--~dg~I~vwd~~~~~----~~~~~~~~~h~~~v~~l~~spdg~~l~sg 631 (723)
.+..++.... .......+.++|+|++++++ .++.|.+|++.... .+..... ......++++|||++|+++
T Consensus 216 ~~~~~p~~~~-~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~va 291 (330)
T PRK11028 216 TLDMMPADFS-DTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIAA 291 (330)
T ss_pred EEecCCCcCC-CCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEEE
Confidence 2221111100 00234468999999999985 46899999986432 2222221 2345578999999999987
Q ss_pred eC-CCcEEEEECC
Q 004924 632 CK-SGHVKVFDTS 643 (723)
Q Consensus 632 s~-dg~I~iwd~~ 643 (723)
.. +++|.+|++.
T Consensus 292 ~~~~~~v~v~~~~ 304 (330)
T PRK11028 292 GQKSHHISVYEID 304 (330)
T ss_pred EccCCcEEEEEEc
Confidence 76 8999999874
No 178
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=1.7e-16 Score=156.87 Aligned_cols=201 Identities=11% Similarity=0.115 Sum_probs=163.7
Q ss_pred CCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCC-------cEEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEE
Q 004924 437 DPKDSISCFALR---GSHLFSAS-GGKISIFSLETF-------QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILV 503 (723)
Q Consensus 437 ~h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~~~-------~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~i 503 (723)
+|.++|..++|+ +..+|+|+ |.+|.||.+..+ +.+..+.+|...|..++|+|.. .|++++.|.+|.+
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~i 158 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSI 158 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEE
Confidence 799999999999 77899999 999999998653 4567788999999999999998 8899999999999
Q ss_pred EeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCC
Q 004924 504 HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 583 (723)
Q Consensus 504 wd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~ 583 (723)
||+.+|+.+..+. |...|.++.|+.||..+++.+.|+.|+|||.++++.+... .+|.. ..-..+.|-.+|.
T Consensus 159 Wnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~------~~heG--~k~~Raifl~~g~ 229 (472)
T KOG0303|consen 159 WNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG------VAHEG--AKPARAIFLASGK 229 (472)
T ss_pred EeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec------ccccC--CCcceeEEeccCc
Confidence 9999999988888 9999999999999999999999999999999997654332 23432 4556778888998
Q ss_pred EEEEE----cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEE-EEeCCCcEEEEECCCCc
Q 004924 584 HLLSI----HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY-VSCKSGHVKVFDTSTLE 646 (723)
Q Consensus 584 ~l~~s----~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~-sgs~dg~I~iwd~~~~~ 646 (723)
.+.+| ++..+-+||..+.+.-..+..-...+.|.---|.+|.+.++ +|-.|+.|+.|.+....
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 55554 67799999987654322222213366777777889888777 56679999999988765
No 179
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.73 E-value=4.4e-16 Score=148.00 Aligned_cols=257 Identities=14% Similarity=0.167 Sum_probs=181.5
Q ss_pred eeeCCCcccccccCCCCCEEE-EEeCC-------CeEEEEeecccCCCCceeEE----ecCCCCCCCceEEEEEeCCCCE
Q 004924 321 CFNDNNQSRESTSLPDADSAV-CAKSL-------EKSVNLKLQLINEPSECRTL----LLPDNSFGGRVVRLIYSHSGDF 388 (723)
Q Consensus 321 ~~~~~~~~~~~~~spdg~~la-~~s~d-------g~v~iw~~~~~~~~~~~~~~----~l~~~~h~~~V~~l~fspdg~~ 388 (723)
+|++.+.......+|-.+.|. ++-.+ ..+.||.+.....+.....+ .|+. .+-+.|.|+.|.|++..
T Consensus 59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldt-eavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDT-EAVGKINCVEWEPNSDK 137 (370)
T ss_pred hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCH-HHhCceeeEEEcCCCCe
Confidence 445555555655677555544 43321 23589998764333221111 1221 35569999999999999
Q ss_pred EEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe----CCEEEEEeCCcEEEEE
Q 004924 389 LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSASGGKISIFS 464 (723)
Q Consensus 389 las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s----~~~l~s~sdg~I~vwd 464 (723)
+++.. |..|.+|+++.... ....+ -...+. +|....++-+|+ ++.+++.+|+++..||
T Consensus 138 lasm~-dn~i~l~~l~ess~----~vaev----~ss~s~---------e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D 199 (370)
T KOG1007|consen 138 LASMD-DNNIVLWSLDESSK----IVAEV----LSSESA---------EMRHSFTSGAWSPHHDGNQVATTSDSTLQFWD 199 (370)
T ss_pred eEEec-cCceEEEEcccCcc----hheee----cccccc---------cccceecccccCCCCccceEEEeCCCcEEEEE
Confidence 88876 78999999885332 01111 000110 355667777888 7889999999999999
Q ss_pred cCCCcEEEEEe-CCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCC-CcEEEEEcCcCCcEEEEEEcCCC-CEEEEEeC
Q 004924 465 LETFQTLATFA-NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLSL-NVLVSSGA 539 (723)
Q Consensus 465 ~~~~~~~~~~~-~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~-~~~~~~l~~~~~~i~~l~~spdg-~~l~s~s~ 539 (723)
+++..+...+. .|...|..+.|+|+. .|++|+.||.|++||.+. ..++..+.+|...|.++.|+|.. ..+++|+.
T Consensus 200 ~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S 279 (370)
T KOG1007|consen 200 LRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS 279 (370)
T ss_pred ccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC
Confidence 99888777765 888999999999998 899999999999999875 56788999999999999999954 56889999
Q ss_pred CCcEEEEeCCCCce-------------------eeceeeee----eecCCCCCCCCeEEEEEccCCCEEEE--EcCCcEE
Q 004924 540 DAQLCVWDAVGWKK-------------------LCSKFLHS----FQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQID 594 (723)
Q Consensus 540 dg~I~vwd~~~~~~-------------------~~~~~l~~----~~~~~~~~~~~v~~l~~spdg~~l~~--s~dg~I~ 594 (723)
|..|.+|...+-.. .+.++++. ....|. ..|.+++||.-..++.+ +.||++.
T Consensus 280 Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE---DSVY~~aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 280 DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE---DSVYALAWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc---cceEEEeeccCCCeeEEEeccCceEE
Confidence 99999997643110 01112221 233444 79999999998888876 5999988
Q ss_pred EEECC
Q 004924 595 VYEAP 599 (723)
Q Consensus 595 vwd~~ 599 (723)
|=.+.
T Consensus 357 Is~V~ 361 (370)
T KOG1007|consen 357 ISSVP 361 (370)
T ss_pred eecCC
Confidence 86653
No 180
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1e-16 Score=165.52 Aligned_cols=249 Identities=14% Similarity=0.143 Sum_probs=188.0
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCC--------CcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEE
Q 004924 437 DPKDSISCFALR--GSHLFSAS-GGKISIFSLET--------FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVH 504 (723)
Q Consensus 437 ~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~--------~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iw 504 (723)
.|.+.|..++|. ...|++++ ||++++|++.. -+.+.+|++|.++|.|+++.+++ .+++|+.||+|+.|
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW 371 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence 488899999998 77899999 99999999932 25678899999999999999999 99999999999999
Q ss_pred eCCC------C----cEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeE
Q 004924 505 CPCT------K----KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN 574 (723)
Q Consensus 505 d~~~------~----~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~ 574 (723)
++.. . .....+.||...|+.+++++....|++++.||+++.|+...... +....+..+ +...
T Consensus 372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~----~~f~~~~e~----g~Pl 443 (577)
T KOG0642|consen 372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP----CTFGEPKEH----GYPL 443 (577)
T ss_pred ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc----cccCCcccc----CCcc
Confidence 5431 1 23456789999999999999999999999999999999877432 111122222 3455
Q ss_pred EEEEccCC-CEEEEE-cCCcEEEEECCCCceeEEecCCC-----CCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcE
Q 004924 575 HIQFHPDQ-IHLLSI-HEGQIDVYEAPTLNHTSQLVPDK-----MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL 647 (723)
Q Consensus 575 ~l~~spdg-~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~-----h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~ 647 (723)
++.+-... ...+++ .-+.-.++++.....+..+.... ....+..+.+.|.+.+.+++.+|+.|+++|..++++
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence 66665433 222222 33444445555444444443211 134577888999999999999999999999999999
Q ss_pred EEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCceeeec
Q 004924 648 RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK 704 (723)
Q Consensus 648 ~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~w~~ 704 (723)
+.....+ .+.++++++.| +|.+|++++.||.|++|.+....+.-..
T Consensus 524 l~s~~a~----------~~svtslai~~-ng~~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 524 LHSMVAH----------KDSVTSLAIDP-NGPYLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred chheeec----------cceecceeecC-CCceEEeecCCceeehhhccchheeecc
Confidence 8877632 33456999999 8999999999999999999876654433
No 181
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=6.9e-17 Score=166.71 Aligned_cols=258 Identities=15% Similarity=0.172 Sum_probs=181.5
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 450 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 450 (723)
|.+.|..++|.|....|++++.||++.+|+++.... .+.. .+...+...+|.++|.|++.. +.
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~-s~~~--------------~~epi~tfraH~gPVl~v~v~~n~~ 357 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK-SAEK--------------DVEPILTFRAHEGPVLCVVVPSNGE 357 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCC-cccc--------------ceeeeEEEecccCceEEEEecCCce
Confidence 899999999999999999999999999999953211 1110 111111112799999999999 89
Q ss_pred EEEEEe-CCcEEEEEcCCC----------cEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCc
Q 004924 451 HLFSAS-GGKISIFSLETF----------QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH 518 (723)
Q Consensus 451 ~l~s~s-dg~I~vwd~~~~----------~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~ 518 (723)
.+++|+ ||+|+.|++... .....+.||.+.|+.+++++.. .|++++.||+++.|+.....+ ..+...
T Consensus 358 ~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~ 436 (577)
T KOG0642|consen 358 HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEP 436 (577)
T ss_pred EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCc
Confidence 999999 999999966421 2345677999999999999999 999999999999999877665 334322
Q ss_pred C--CcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCC---CCCCeEEEEEccCCCEEEEE-cCCc
Q 004924 519 Q--NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP---ETTIVNHIQFHPDQIHLLSI-HEGQ 592 (723)
Q Consensus 519 ~--~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~---~~~~v~~l~~spdg~~l~~s-~dg~ 592 (723)
. +.-.++.+-.. ..+....+.....+++.+.+.... +..+.....+ ....+.-+.++|.+...+++ .|+.
T Consensus 437 ~e~g~Plsvd~~ss--~~a~~~~s~~~~~~~~~~~ev~s~--~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~ 512 (577)
T KOG0642|consen 437 KEHGYPLSVDRTSS--RPAHSLASFRFGYTSIDDMEVVSD--LLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS 512 (577)
T ss_pred cccCCcceEeeccc--hhHhhhhhcccccccchhhhhhhh--eeeccccCCCcccccCccceEEecCCCCeeEecccCCc
Confidence 1 22233443221 111122233333343333211111 1111111110 01457788999999888885 8999
Q ss_pred EEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEee
Q 004924 593 IDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 652 (723)
Q Consensus 593 I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~ 652 (723)
|+++|..+++.+.... .|...++++++.|+|.+|++|+.||.+++|.+....++....
T Consensus 513 Ir~~dn~~~~~l~s~~--a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 513 IRFFDNKTGKILHSMV--AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred eecccccccccchhee--eccceecceeecCCCceEEeecCCceeehhhccchheeeccc
Confidence 9999999999987765 468999999999999999999999999999998776655444
No 182
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=6.7e-16 Score=158.20 Aligned_cols=207 Identities=15% Similarity=0.190 Sum_probs=147.8
Q ss_pred CCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---
Q 004924 372 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 448 (723)
Q Consensus 372 ~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--- 448 (723)
||++.|+|+.|+.||.+|++||.|-.+.|||.-..+. ...+ ..+|...|.++.|-
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl-----lhsI-----------------~TgHtaNIFsvKFvP~t 105 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL-----LHSI-----------------STGHTANIFSVKFVPYT 105 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecchhcce-----eeee-----------------ecccccceeEEeeeccC
Confidence 4999999999999999999999999999999653211 1111 12799999999998
Q ss_pred -CCEEEEEe-CCcEEEEEcCC----------CcEEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEE--
Q 004924 449 -GSHLFSAS-GGKISIFSLET----------FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTK-- 512 (723)
Q Consensus 449 -~~~l~s~s-dg~I~vwd~~~----------~~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~-- 512 (723)
+..+++|. |..|+++|+.. .+....+..|...|..++..|++ .+.+++.||+|+-+|++.....
T Consensus 106 nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 106 NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred CCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc
Confidence 56777877 99999999974 23344566888999999999999 8999999999999999863211
Q ss_pred -----E---EEcCcCCcEEEEEEcCC-CCEEEEEeCCCcEEEEeCCC--------Ccee-----eceeeeeeecCCCCC-
Q 004924 513 -----A---KLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVG--------WKKL-----CSKFLHSFQTGLVPE- 569 (723)
Q Consensus 513 -----~---~l~~~~~~i~~l~~spd-g~~l~s~s~dg~I~vwd~~~--------~~~~-----~~~~l~~~~~~~~~~- 569 (723)
. .+...--...|+..+|. ..+|++|+.|-..++||.+. +... ...++..+..+|...
T Consensus 186 ~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~ 265 (758)
T KOG1310|consen 186 DEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNS 265 (758)
T ss_pred cccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCc
Confidence 1 11112234678899995 46799999999999999432 1100 001122222222210
Q ss_pred -------CCCeEEEEEccCCCEEEEE-cCCcEEEEECCC
Q 004924 570 -------TTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT 600 (723)
Q Consensus 570 -------~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~ 600 (723)
...++.+.|+|+|..++++ ....|+++|+..
T Consensus 266 ~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 266 QGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred ccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 1235678999999999887 445799998754
No 183
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.1e-15 Score=167.51 Aligned_cols=294 Identities=15% Similarity=0.149 Sum_probs=199.1
Q ss_pred CceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe----CC
Q 004924 375 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GS 450 (723)
Q Consensus 375 ~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s----~~ 450 (723)
..-..+.|+|-...++++...-.|+|||++.+...++ |+. +. .....|+.+.+- ..
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~----------F~n--~~--------~~~t~Vs~l~liNe~D~a 1124 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNG----------FDN--GA--------FPDTRVSDLELINEQDDA 1124 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceecc----------ccC--CC--------CCCCccceeeeecccchh
Confidence 3466788999888999998888999999985444111 111 00 135678888876 45
Q ss_pred EEEEEe-CCcEEEEEcC-C----CcEEEEEe-------CCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEc
Q 004924 451 HLFSAS-GGKISIFSLE-T----FQTLATFA-------NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK 516 (723)
Q Consensus 451 ~l~s~s-dg~I~vwd~~-~----~~~~~~~~-------~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~ 516 (723)
++++|+ ||.|+||+-- + .+.+..+. +..+.-.-+.|.... +|++++.-..|+|||.........+.
T Consensus 1125 LlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP 1204 (1387)
T KOG1517|consen 1125 LLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIP 1204 (1387)
T ss_pred heeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecc
Confidence 788888 9999999642 2 23333222 111222456787766 77777778899999998877776654
Q ss_pred C-cCCcEEEEEEc-CCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCC-EEEE-EcCCc
Q 004924 517 G-HQNRITCLAYS-LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQ 592 (723)
Q Consensus 517 ~-~~~~i~~l~~s-pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~-~l~~-s~dg~ 592 (723)
. ....|+++.-+ +.|+.++.|..||.|++||.+...... .+. ....|.. ..+|..+.+.+.|- .|++ +.+|.
T Consensus 1205 ~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds--~v~-~~R~h~~-~~~Iv~~slq~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1205 YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDS--LVC-VYREHND-VEPIVHLSLQRQGLGELVSGSQDGD 1280 (1387)
T ss_pred cCCCccceeecccccCCceEEEeecCCceEEeecccCCccc--cce-eecccCC-cccceeEEeecCCCcceeeeccCCe
Confidence 3 44556666543 357999999999999999998743321 222 3344441 02399999998763 3666 69999
Q ss_pred EEEEECCCCceeEEecCCCC---CCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeec-ccccCCCCccCccce
Q 004924 593 IDVYEAPTLNHTSQLVPDKM---DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL-TAYAQPGTISLELYP 668 (723)
Q Consensus 593 I~vwd~~~~~~~~~~~~~~h---~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~~~~g~~~~~v~~ 668 (723)
|++||++.......+....| ++..+++..+++...+|+|+. +.|.||++...+ +..+.. ..+. |-..+. +
T Consensus 1281 I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~--~q~~gs--~ 1354 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFM--GQRIGS--V 1354 (1387)
T ss_pred EEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCcccc--cCcCCC--c
Confidence 99999987422222111111 335999999999999999998 999999997544 333332 2222 111222 3
Q ss_pred EEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 669 LVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 669 ~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
.|++||| ..-++|+|+.|.+|.||....++
T Consensus 1355 scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1355 SCLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ceeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence 5999999 77889999999999999987654
No 184
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.71 E-value=2.5e-15 Score=167.32 Aligned_cols=297 Identities=13% Similarity=0.158 Sum_probs=193.6
Q ss_pred CCCCceEEEEEeCCC-CEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--
Q 004924 372 SFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 448 (723)
Q Consensus 372 ~h~~~V~~l~fspdg-~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-- 448 (723)
.|...|..++.+++. .+++|||.||+|++|+...-.. +....-+...|+. ..+.+.++...
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~---~~~s~rS~ltys~-------------~~sr~~~vt~~~~ 1109 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEG---EGGSARSELTYSP-------------EGSRVEKVTMCGN 1109 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhc---CcceeeeeEEEec-------------cCCceEEEEeccC
Confidence 388888898888755 9999999999999999875322 1111111122332 34566777766
Q ss_pred CCEEEEEe-CCcEEEEEcCCC-------cEEEEEeCC-CCCe-EEEEEcCC--C-eEEEEECCCcEEEEeCCCCcEEEEE
Q 004924 449 GSHLFSAS-GGKISIFSLETF-------QTLATFANP-PPIA-TYFILLPQ--D-LFAFGFDDSSILVHCPCTKKTKAKL 515 (723)
Q Consensus 449 ~~~l~s~s-dg~I~vwd~~~~-------~~~~~~~~~-~~~v-~~l~~~p~--~-~l~sgs~dg~I~iwd~~~~~~~~~l 515 (723)
++.+|+++ ||.|++.+++.. .+.+....+ .+.+ ..-++... . .++.+...+.|..||++.......+
T Consensus 1110 ~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1110 GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh
Confidence 88888888 999999998752 122222222 2223 33333322 2 6788888999999999887655444
Q ss_pred c--CcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCC---CEEEE-E-
Q 004924 516 K--GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ---IHLLS-I- 588 (723)
Q Consensus 516 ~--~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg---~~l~~-s- 588 (723)
+ ...+.|++++.+|.+.++++|+..|.+.+||++-+..+.. ...++. .+++.+..+|-. ...++ +
T Consensus 1190 k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~s-----w~~P~~---~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILS-----WEHPAR---APIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeec-----ccCccc---CCcceEEeeccCCCCceEEEecc
Confidence 3 2457899999999999999999999999999997543332 222222 678888777643 34444 3
Q ss_pred -cCCcEEEEECCCCceeEEecCC-C----------------CCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEE-
Q 004924 589 -HEGQIDVYEAPTLNHTSQLVPD-K----------------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC- 649 (723)
Q Consensus 589 -~dg~I~vwd~~~~~~~~~~~~~-~----------------h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~- 649 (723)
..+.|.+|++.+|.+..++... + +.-.....++...+.++.+|+.|..|+.||........
T Consensus 1262 ~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~ 1341 (1431)
T KOG1240|consen 1262 SSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSY 1341 (1431)
T ss_pred cCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccc
Confidence 5678999999998776665432 0 11112233333445689999999999999986543220
Q ss_pred -------------------Eeec----------------------------ccccCCCCccCccceEEEEEecCCCCEEE
Q 004924 650 -------------------QINL----------------------------TAYAQPGTISLELYPLVIAAHPLEPNRIA 682 (723)
Q Consensus 650 -------------------~~~~----------------------------~~~~~~g~~~~~v~~~~v~~sp~d~~~la 682 (723)
.+.+ +...+++.|.+.|. ++++...+..+|+
T Consensus 1342 ~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~It--dma~~~~~q~llv 1419 (1431)
T KOG1240|consen 1342 AVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPIT--DMATLKSEQPLLV 1419 (1431)
T ss_pred cccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhh--hhhhhccCccEEE
Confidence 0000 00112222333444 7776664556999
Q ss_pred EEECCCcEEEEe
Q 004924 683 LGLTNGRVHVIE 694 (723)
Q Consensus 683 s~s~Dg~v~iWd 694 (723)
+++.||.|+||.
T Consensus 1420 s~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1420 SSSRDGVIKIWK 1431 (1431)
T ss_pred EecCCCeeeecC
Confidence 999999999995
No 185
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.70 E-value=3.5e-14 Score=150.41 Aligned_cols=244 Identities=11% Similarity=0.051 Sum_probs=158.6
Q ss_pred CCCeEEEEEe--CCEEEEEe--CCcEEEEEcC-CCcE--EEEEeCCCCCeEEEEEcCCC-eEEEEE-CCCcEEEEeCCC-
Q 004924 439 KDSISCFALR--GSHLFSAS--GGKISIFSLE-TFQT--LATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHCPCT- 508 (723)
Q Consensus 439 ~~~V~~v~~s--~~~l~s~s--dg~I~vwd~~-~~~~--~~~~~~~~~~v~~l~~~p~~-~l~sgs-~dg~I~iwd~~~- 508 (723)
.+....++++ +++|++++ ++.|.+|++. ++.. ..... .......++++|++ .+++++ .++.|.+|++++
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 3456678888 77887765 7899999996 3432 22222 23356789999999 666655 588999999864
Q ss_pred C---cEEEEEcCcCCcEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeece--eeeeeecCCCCCCCCeEEEEEccCC
Q 004924 509 K---KTKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSK--FLHSFQTGLVPETTIVNHIQFHPDQ 582 (723)
Q Consensus 509 ~---~~~~~l~~~~~~i~~l~~spdg~~l~s~s-~dg~I~vwd~~~~~~~~~~--~l~~~~~~~~~~~~~v~~l~~spdg 582 (723)
+ +.+..+.+ .....+++++|+|+++++++ .++.|.+||+.+....... .......+ .....++|+|+|
T Consensus 113 g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-----~~p~~~~~~pdg 186 (330)
T PRK11028 113 GIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-----AGPRHMVFHPNQ 186 (330)
T ss_pred CCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-----CCCceEEECCCC
Confidence 3 22333332 23467788999999886555 5699999999763211100 00112222 456789999999
Q ss_pred CEEEEE--cCCcEEEEECCC--Cc--eeEEecCCC----CCCCeEEEEEeeCCcEEEEEeC-CCcEEEEECCCCcEEEEe
Q 004924 583 IHLLSI--HEGQIDVYEAPT--LN--HTSQLVPDK----MDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQI 651 (723)
Q Consensus 583 ~~l~~s--~dg~I~vwd~~~--~~--~~~~~~~~~----h~~~v~~l~~spdg~~l~sgs~-dg~I~iwd~~~~~~~~~~ 651 (723)
++++++ .++.|.+||+.. ++ .+..+.... +......+.++|+|++++++.. ++.|.+|++........+
T Consensus 187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~ 266 (330)
T PRK11028 187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSF 266 (330)
T ss_pred CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEE
Confidence 999874 479999999973 33 233332110 1223346889999999998865 689999998654322222
Q ss_pred ecccccCCCCccCccceEEEEEecCCCCEEEEEEC-CCcEEEEecCC
Q 004924 652 NLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT-NGRVHVIEPLE 697 (723)
Q Consensus 652 ~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~-Dg~v~iWd~~~ 697 (723)
..+.. .| ..+..++++| ++++|++++. +++|.+|++..
T Consensus 267 ~~~~~--~~-----~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 267 EGHQP--TE-----TQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred eEEEe--cc-----ccCCceEECC-CCCEEEEEEccCCcEEEEEEcC
Confidence 21111 11 1233789999 8888887765 89999998854
No 186
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=2.3e-14 Score=141.23 Aligned_cols=218 Identities=13% Similarity=0.218 Sum_probs=157.9
Q ss_pred CCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcc-----cccccceee----------------eeEEEecCCCeeeee
Q 004924 374 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ-----SLEEENVNM----------------ESQLYQPSSKLVMTN 432 (723)
Q Consensus 374 ~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~-----~~g~~~~~~----------------~~~~~~~~~~~~~~~ 432 (723)
...+..+.|+.|+..|..|+.||. ++++...... ..|..+.+. ..++++.+.+..+..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe 83 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICE 83 (391)
T ss_pred CcceeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEE
Confidence 445667778888888888887765 4666554322 011111000 123344444443333
Q ss_pred ccCCCCCCCeEEEEEeCCEEEEEeCCcEEEEEcCCCcEEEEEeC---CCCCeEEEEEcCCC-eEEEE--ECCCcEEEEeC
Q 004924 433 DIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFAN---PPPIATYFILLPQD-LFAFG--FDDSSILVHCP 506 (723)
Q Consensus 433 ~~~~~h~~~V~~v~~s~~~l~s~sdg~I~vwd~~~~~~~~~~~~---~~~~v~~l~~~p~~-~l~sg--s~dg~I~iwd~ 506 (723)
.. ...+|.+|.++-+.|+++-.+.|.|||+++.+.+.++.. +...+.++++++.+ +++.- ...|.|.+||.
T Consensus 84 ~~---fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 84 IF---FPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT 160 (391)
T ss_pred Ee---cCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence 32 456788888886667777766699999999999988863 34456677777776 77643 34689999999
Q ss_pred CCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEE
Q 004924 507 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ-LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 585 (723)
Q Consensus 507 ~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~-I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l 585 (723)
.+-+++..+..|.+.+.+++|+++|.+||+++..|+ |||+.+.+|+. +..+..|..+ ..|.+++|+|++++|
T Consensus 161 ~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k-----l~eFRRG~~~--~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 161 INLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK-----LYEFRRGTYP--VSIYSLSFSPDSQFL 233 (391)
T ss_pred ccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE-----eeeeeCCcee--eEEEEEEECCCCCeE
Confidence 999999999999999999999999999999999998 69999999754 3334455443 679999999999999
Q ss_pred EE-EcCCcEEEEECCCCc
Q 004924 586 LS-IHEGQIDVYEAPTLN 602 (723)
Q Consensus 586 ~~-s~dg~I~vwd~~~~~ 602 (723)
++ +..++|++|.++...
T Consensus 234 ~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 234 AASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEecCCCeEEEEEecccc
Confidence 98 588999999986543
No 187
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.4e-15 Score=148.15 Aligned_cols=276 Identities=8% Similarity=0.082 Sum_probs=183.6
Q ss_pred CEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeC--CCCEEEEEECCCcEEEEeccCCcccccccce
Q 004924 338 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQTATHKLWKWQSNKQSLEEENV 415 (723)
Q Consensus 338 ~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fsp--dg~~las~s~dg~i~iWd~~~~~~~~g~~~~ 415 (723)
..+|++-+.|.|++||..+ .+.+..+ . +|...++.+.|.. .+..+.+|+.||+|++||++.... ..
T Consensus 41 ~~vav~lSngsv~lyd~~t---g~~l~~f--k--~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e-----~a 108 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT---GQLLEEF--K--GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE-----SA 108 (376)
T ss_pred eeEEEEecCCeEEEEeccc---hhhhhee--c--CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh-----hh
Confidence 5688899999999999885 2333333 3 3777888888877 356788999999999999885322 11
Q ss_pred eeeeEEEecCCCeeeeeccCCCCC-CCeEEEEEe--CCEEEEEe-----CCcEEEEEcCCCcE-EEEEe-CCCCCeEEEE
Q 004924 416 NMESQLYQPSSKLVMTNDIAADPK-DSISCFALR--GSHLFSAS-----GGKISIFSLETFQT-LATFA-NPPPIATYFI 485 (723)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~s--~~~l~s~s-----dg~I~vwd~~~~~~-~~~~~-~~~~~v~~l~ 485 (723)
. ..|. .+. .+..|++-+ ++.+++|. +-.|.+||++..+. ++.+. .|.+.|+++.
T Consensus 109 ~---~~~~-------------~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lr 172 (376)
T KOG1188|consen 109 R---ISWT-------------QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLR 172 (376)
T ss_pred h---eecc-------------CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEE
Confidence 1 1121 233 466777776 66677665 35799999988766 55554 8999999999
Q ss_pred EcCCC--eEEEEECCCcEEEEeCCCCcE---EEEEcCcCCcEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeeceee
Q 004924 486 LLPQD--LFAFGFDDSSILVHCPCTKKT---KAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFL 559 (723)
Q Consensus 486 ~~p~~--~l~sgs~dg~I~iwd~~~~~~---~~~l~~~~~~i~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~~~~l 559 (723)
|+|.. .|++||.||.|.+||+..... +...-.|...|.++.|..++ +.+.+-+...+..+|+++.+........
T Consensus 173 FHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~ 252 (376)
T KOG1188|consen 173 FHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLEN 252 (376)
T ss_pred ecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccC
Confidence 99998 999999999999999875422 12222377889999999887 4588888999999999998754332221
Q ss_pred eeeecCCCC---CCCCeEEEEEccC-CCEEEE-Ec-CCcEEEEEC---CCC---ceeEEecCCCCCCCeEEEEEeeCCcE
Q 004924 560 HSFQTGLVP---ETTIVNHIQFHPD-QIHLLS-IH-EGQIDVYEA---PTL---NHTSQLVPDKMDLPITYATYSCDGKC 627 (723)
Q Consensus 560 ~~~~~~~~~---~~~~v~~l~~spd-g~~l~~-s~-dg~I~vwd~---~~~---~~~~~~~~~~h~~~v~~l~~spdg~~ 627 (723)
..+...... .-..+... .+|. +...+. +. -+...++-+ .++ +.+..+.+ +|..-|.++.|...+.+
T Consensus 253 ~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~ 330 (376)
T KOG1188|consen 253 PDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDV 330 (376)
T ss_pred ccchhhhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccce
Confidence 111100000 00111111 1232 333333 32 344444432 233 23333332 46777888999888999
Q ss_pred EEEEeCCCcEEEEECC
Q 004924 628 IYVSCKSGHVKVFDTS 643 (723)
Q Consensus 628 l~sgs~dg~I~iwd~~ 643 (723)
+++|++||.+.+|...
T Consensus 331 l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 331 LYTGGEDGLLQAWKVE 346 (376)
T ss_pred eeccCCCceEEEEecC
Confidence 9999999999999863
No 188
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.69 E-value=8e-15 Score=159.36 Aligned_cols=265 Identities=14% Similarity=0.189 Sum_probs=183.3
Q ss_pred CeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCC-CCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecC
Q 004924 347 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS 425 (723)
Q Consensus 347 g~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspd-g~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~ 425 (723)
+.+.+|++.+. ...... +. -...|.|+.|+|. ...+|.|..+|.|.+||+...... .....
T Consensus 222 ~~~~vW~~~~p---~~Pe~~-~~---~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~---~~s~l-------- 283 (555)
T KOG1587|consen 222 GVLLVWSLKNP---NTPELV-LE---SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT---PPSGL-------- 283 (555)
T ss_pred ceEEEEecCCC---CCceEE-Ee---cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCC---CCccc--------
Confidence 37899999863 222222 22 4789999999995 566777777999999998854320 00000
Q ss_pred CCeeeeeccCCCCCCCeEEEEEe----CCEEEEEe-CCcEEEEEcCCCcEE------EEEe------CCCCCeEEEEEcC
Q 004924 426 SKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTL------ATFA------NPPPIATYFILLP 488 (723)
Q Consensus 426 ~~~~~~~~~~~~h~~~V~~v~~s----~~~l~s~s-dg~I~vwd~~~~~~~------~~~~------~~~~~v~~l~~~p 488 (723)
. .....|..++..+.|. +.-+++++ ||.|..|+++.-... .... .....+++++|.+
T Consensus 284 -----s-~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~ 357 (555)
T KOG1587|consen 284 -----S-ALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEP 357 (555)
T ss_pred -----c-cccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeecc
Confidence 0 0011599999999998 44588888 999999987643221 1111 2234678999999
Q ss_pred CC--eEEEEECCCcEEEEeCCCCcE--------EEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeecee
Q 004924 489 QD--LFAFGFDDSSILVHCPCTKKT--------KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 558 (723)
Q Consensus 489 ~~--~l~sgs~dg~I~iwd~~~~~~--------~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~ 558 (723)
.. .+++|+.+|.|.--+....+. ...+..|.++|+++.++|=+..++..+.|.++++|..... ..+
T Consensus 358 ~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~----~~P 433 (555)
T KOG1587|consen 358 TDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI----ASP 433 (555)
T ss_pred CCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC----CCc
Confidence 88 999999999998744332221 2244568899999999997766555555999999987731 233
Q ss_pred eeeeecCCCCCCCCeEEEEEccCCCEEE-EE-cCCcEEEEECCCC--ceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC
Q 004924 559 LHSFQTGLVPETTIVNHIQFHPDQIHLL-SI-HEGQIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS 634 (723)
Q Consensus 559 l~~~~~~~~~~~~~v~~l~~spdg~~l~-~s-~dg~I~vwd~~~~--~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d 634 (723)
+..+ ..+. ..+++++|||....+. ++ .+|.|.+||+... .++.+... +....+.+.|+++|+.|++|...
T Consensus 434 l~~~-~~~~---~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~--~~~~l~~~~~s~~g~~lavGd~~ 507 (555)
T KOG1587|consen 434 LLSL-DSSP---DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV--CSPALTRVRWSPNGKLLAVGDAN 507 (555)
T ss_pred chhh-hhcc---ceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc--cccccceeecCCCCcEEEEecCC
Confidence 4322 2232 5699999999875544 44 7899999998753 33444432 25667788899999999999999
Q ss_pred CcEEEEECCCC
Q 004924 635 GHVKVFDTSTL 645 (723)
Q Consensus 635 g~I~iwd~~~~ 645 (723)
|.+++|++...
T Consensus 508 G~~~~~~l~~~ 518 (555)
T KOG1587|consen 508 GTTHILKLSES 518 (555)
T ss_pred CcEEEEEcCch
Confidence 99999999643
No 189
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.69 E-value=1.1e-16 Score=171.16 Aligned_cols=273 Identities=11% Similarity=0.102 Sum_probs=207.5
Q ss_pred CCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--C
Q 004924 372 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 449 (723)
Q Consensus 372 ~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~ 449 (723)
+|.+.|.|+.|...|.++++|+.|..++||...+..+ .++. . ||.+.|+.++.+ +
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~-----lAs~----------------r--Ghs~ditdlavs~~n 244 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC-----LASC----------------R--GHSGDITDLAVSSNN 244 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhh-----hccC----------------C--CCccccchhccchhh
Confidence 5999999999999999999999999999999764333 2222 1 899999999999 5
Q ss_pred CEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEE----c-CcCCcEE
Q 004924 450 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL----K-GHQNRIT 523 (723)
Q Consensus 450 ~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l----~-~~~~~i~ 523 (723)
..+++++ |..|++|.+.++..+..+.+|.+.|++++|+|- ++.+.||++++||.+ -.++... . .....+.
T Consensus 245 ~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~---~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~ 320 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR---ASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVD 320 (1113)
T ss_pred hhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCcc---ccCCCCCceEecccc-ccccccCCCCCCccccccee
Confidence 5678888 999999999999999999999999999999994 578899999999987 1221111 1 1234566
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCC-CEEEEE-cCCcEEEEECCCC
Q 004924 524 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLSI-HEGQIDVYEAPTL 601 (723)
Q Consensus 524 ~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg-~~l~~s-~dg~I~vwd~~~~ 601 (723)
++.|..++..+++++.|+.-..|...... .+. ..+.-+.++.+. .+.+++ .+..+.+|++.+|
T Consensus 321 s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~------------~~~---~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g 385 (1113)
T KOG0644|consen 321 SILFENNGDRFLTGSRDGEARNHEFEQLA------------WRS---NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG 385 (1113)
T ss_pred eeeccccccccccccCCcccccchhhHhh------------hhc---cceEEEeccccccccceeeeeeeEeeeeecccc
Confidence 77788888889999999998888765411 111 112222222232 333444 7778999999999
Q ss_pred ceeEEecCCCCCCCeEEEEEeeCCc-EEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCE
Q 004924 602 NHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 680 (723)
Q Consensus 602 ~~~~~~~~~~h~~~v~~l~~spdg~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~ 680 (723)
...+... +|...+..+.++|-.. ...+++.||...|||+..|..++.+.. | |.. .....||+ +|..
T Consensus 386 ~l~H~l~--ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~------g-h~k---l~d~kFSq-dgts 452 (1113)
T KOG0644|consen 386 QLLHNLM--GHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI------G-HGK---LVDGKFSQ-DGTS 452 (1113)
T ss_pred hhhhhhc--ccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec------c-cce---eeccccCC-CCce
Confidence 8877765 4688899999999655 455899999999999999988877652 2 122 33789999 8988
Q ss_pred EEEEECCCcEEEEecCCCc
Q 004924 681 IALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 681 las~s~Dg~v~iWd~~~~~ 699 (723)
++...+-|.++|.....++
T Consensus 453 ~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 453 IALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred EecCCCCCceEEeccCCCc
Confidence 8888777899888766554
No 190
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.68 E-value=8e-15 Score=139.69 Aligned_cols=284 Identities=12% Similarity=0.120 Sum_probs=194.3
Q ss_pred CCceEEEEEe--CC-CCEEEEEEC----CCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEE
Q 004924 374 GGRVVRLIYS--HS-GDFLVALTQ----TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 446 (723)
Q Consensus 374 ~~~V~~l~fs--pd-g~~las~s~----dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 446 (723)
.-.+.++.|| |+ +-+||.|+. .+.|.|-.+ +..+++.+..... .|.-+++.+.
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~l-------------------d~~s~e~~~~a~f-d~~YP~tK~~ 103 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQL-------------------DEDSGELVEDANF-DHPYPVTKLM 103 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEE-------------------ccCCCceeccCCC-CCCCCccceE
Confidence 3467788888 33 346777775 244444332 3334444332221 4889999999
Q ss_pred Ee----CC--EEEEEeCCcEEEEEcCC--CcEE--EEE-----eCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCC
Q 004924 447 LR----GS--HLFSASGGKISIFSLET--FQTL--ATF-----ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK 509 (723)
Q Consensus 447 ~s----~~--~l~s~sdg~I~vwd~~~--~~~~--~~~-----~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~ 509 (723)
|. |. -+++.++..+++|.+.. .+.. ..+ ..+..+++++.|+.-. ++.+++-|-+..|||+.+|
T Consensus 104 wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~ 183 (364)
T KOG0290|consen 104 WIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETG 183 (364)
T ss_pred ecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeec
Confidence 98 22 23344456899999873 2211 111 2456789999999877 8899999999999999986
Q ss_pred c---EEEEEcCcCCcEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCC-CE
Q 004924 510 K---TKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IH 584 (723)
Q Consensus 510 ~---~~~~l~~~~~~i~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg-~~ 584 (723)
. ....+-.|...|.+++|...+ ..+++.+.||.+|+||++.-+ ....+..-+..+ .+...++|++.. ++
T Consensus 184 ~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le--HSTIIYE~p~~~----~pLlRLswnkqDpny 257 (364)
T KOG0290|consen 184 VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE--HSTIIYEDPSPS----TPLLRLSWNKQDPNY 257 (364)
T ss_pred cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc--cceEEecCCCCC----CcceeeccCcCCchH
Confidence 3 356677899999999999866 568999999999999999732 122222111212 578899999866 66
Q ss_pred EEE-E-cCCcEEEEECCCC-ceeEEecCCCCCCCeEEEEEeeCC-cEEEEEeCCCcEEEEECCCCcEEEEeec-ccccCC
Q 004924 585 LLS-I-HEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINL-TAYAQP 659 (723)
Q Consensus 585 l~~-s-~dg~I~vwd~~~~-~~~~~~~~~~h~~~v~~l~~spdg-~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~~~~ 659 (723)
+|+ . ....|.|.|++.. .++..+. .|.+.|..++|.|.. ..|++++.|..+-+||+.+.-......+ ..+.
T Consensus 258 mATf~~dS~~V~iLDiR~P~tpva~L~--~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-- 333 (364)
T KOG0290|consen 258 MATFAMDSNKVVILDIRVPCTPVARLR--NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-- 333 (364)
T ss_pred HhhhhcCCceEEEEEecCCCcceehhh--cCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh--
Confidence 776 5 4568999999864 4555554 579999999999964 6899999999999999986432111111 0111
Q ss_pred CCccCccceEEEEEecCCCCEEEEEECCCcEEE
Q 004924 660 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHV 692 (723)
Q Consensus 660 g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~i 692 (723)
.++.|+ .+.|+|..++.++.+... ++.|
T Consensus 334 --a~~EVN--qi~Ws~~~~Dwiai~~~k-klei 361 (364)
T KOG0290|consen 334 --AGGEVN--QIQWSSSQPDWIAICFGK-KLEI 361 (364)
T ss_pred --ccceee--eeeecccCCCEEEEEecC-eeeE
Confidence 144566 999999888999988643 4444
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=3.2e-14 Score=140.16 Aligned_cols=238 Identities=15% Similarity=0.177 Sum_probs=173.1
Q ss_pred CCCCeEEEEEe-C-CEEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECC--CcEEEEeCCCCcEEE
Q 004924 438 PKDSISCFALR-G-SHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDD--SSILVHCPCTKKTKA 513 (723)
Q Consensus 438 h~~~V~~v~~s-~-~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~d--g~I~iwd~~~~~~~~ 513 (723)
....+..+.|+ . ..|..|+...-++|+................|.-+-|+.. ++|..+.+ +.+++++.+.+..+.
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSS-LvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSS-LVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccc-eeEEEecCCCceEEEEEcccCceEE
Confidence 34556677788 3 4455555455677777654432222222333444455544 44444433 358999998888777
Q ss_pred EEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecC--CCCCCCCeEEEEEccCCCEEEE-E--
Q 004924 514 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG--LVPETTIVNHIQFHPDQIHLLS-I-- 588 (723)
Q Consensus 514 ~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~--~~~~~~~v~~l~~spdg~~l~~-s-- 588 (723)
.+. ...+|.++.++. +.|+++-.+. |+|||+++.+ .++++..- +. ..+..+++++.+.+++. +
T Consensus 83 e~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~Mk-----lLhTI~t~~~n~---~gl~AlS~n~~n~ylAyp~s~ 150 (391)
T KOG2110|consen 83 EIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMK-----LLHTIETTPPNP---KGLCALSPNNANCYLAYPGST 150 (391)
T ss_pred EEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccce-----eehhhhccCCCc---cceEeeccCCCCceEEecCCC
Confidence 765 567899998875 4566665544 9999999853 34433322 21 45777777777889997 3
Q ss_pred cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCc-EEEEECCCCcEEEEeecccccCCCCccCccc
Q 004924 589 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH-VKVFDTSTLELRCQINLTAYAQPGTISLELY 667 (723)
Q Consensus 589 ~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~-I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~ 667 (723)
..|.|.+||+.+.+.+..+. .|.+.+.+++|+++|.+||++|+.|+ ||||.+.+|+.+..|.. | ...+.
T Consensus 151 t~GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR------G--~~~~~ 220 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR------G--TYPVS 220 (391)
T ss_pred CCceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC------C--ceeeE
Confidence 67999999999999988886 58999999999999999999999987 79999999999998874 3 22455
Q ss_pred eEEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 668 PLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 668 ~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
+.+++|+| ++.+|++.|..++|+||.++...
T Consensus 221 IySL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 221 IYSLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 66999999 89999999999999999997654
No 192
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.67 E-value=5e-16 Score=145.99 Aligned_cols=243 Identities=13% Similarity=0.153 Sum_probs=177.3
Q ss_pred CCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCcEEEEEe-CCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEE
Q 004924 437 DPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKA 513 (723)
Q Consensus 437 ~h~~~V~~v~~s-~~~l~s~s-dg~I~vwd~~~~~~~~~~~-~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~ 513 (723)
+|.+.|+++.|. +++|.+|. .|.|++|++.+......++ .+...|+.+..-|++.+.+-+.|+.+.+|++.-+..+.
T Consensus 12 p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~ 91 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFIS 91 (323)
T ss_pred cccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceEE
Confidence 689999999999 88899999 8999999999988888888 56678888888887778888999999999986532111
Q ss_pred E--------------E---------------------------------------cCcCCcEEEEEEcC-CCC--EEEEE
Q 004924 514 K--------------L---------------------------------------KGHQNRITCLAYSL-SLN--VLVSS 537 (723)
Q Consensus 514 ~--------------l---------------------------------------~~~~~~i~~l~~sp-dg~--~l~s~ 537 (723)
. + .+..+.+.|..+.. ++. .++.|
T Consensus 92 i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaG 171 (323)
T KOG0322|consen 92 IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAG 171 (323)
T ss_pred EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEe
Confidence 0 0 01123455555433 232 46678
Q ss_pred eCCCcEEEEeCCCCceeecee----eeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCC--Cce--eEEec
Q 004924 538 GADAQLCVWDAVGWKKLCSKF----LHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT--LNH--TSQLV 608 (723)
Q Consensus 538 s~dg~I~vwd~~~~~~~~~~~----l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~--~~~--~~~~~ 608 (723)
.++|.+.+||+.++...-..+ ...-...|. .+|.++.+.+.-..=++ |.+..+..|++.. +.+ .....
T Consensus 172 yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~---qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~ 248 (323)
T KOG0322|consen 172 YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK---QPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEIT 248 (323)
T ss_pred ccCCeEEEEEccCCceeeccccccccccchhhcc---CcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEE
Confidence 889999999999874322111 111123344 78999999865333233 4566788888753 222 11111
Q ss_pred CCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCC
Q 004924 609 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 688 (723)
Q Consensus 609 ~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg 688 (723)
. ....|..+..-||++.+|+++.|+.|+||+.++.+.+..++.| ...++ +++|+| +..++|++|.|+
T Consensus 249 l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH--------sagvn--~vAfsp-d~~lmAaaskD~ 315 (323)
T KOG0322|consen 249 L--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH--------SAGVN--AVAFSP-DCELMAAASKDA 315 (323)
T ss_pred e--cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh--------hccee--EEEeCC-CCchhhhccCCc
Confidence 1 1455788899999999999999999999999999999999764 45566 999999 788999999999
Q ss_pred cEEEEec
Q 004924 689 RVHVIEP 695 (723)
Q Consensus 689 ~v~iWd~ 695 (723)
+|-+|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999986
No 193
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=5.3e-14 Score=152.92 Aligned_cols=328 Identities=9% Similarity=0.080 Sum_probs=217.6
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCC---CCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCccc
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD---NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 409 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~---~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~ 409 (723)
..+.|......- +..+.+|+.... . +.. ... ..|+-.++|.++||+++++|+|..||.|.+|.--.
T Consensus 168 ~~~~ge~~~i~~-~~~~~~~~v~~~----~-~~~-~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~---- 236 (792)
T KOG1963|consen 168 DNNSGEFKGIVH-MCKIHIYFVPKH----T-KHT-SSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFG---- 236 (792)
T ss_pred EcCCceEEEEEE-eeeEEEEEeccc----c-eee-ccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccc----
Confidence 344444444333 566788888742 1 111 110 23778899999999999999999999999997331
Q ss_pred ccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEE
Q 004924 410 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 486 (723)
Q Consensus 410 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~ 486 (723)
....+. +..+++ =|...|.+++|+ |.+|++|+ .|.+.+|.+.+++ .+-+..-...|..+.+
T Consensus 237 --~~~~~~--------t~t~lH-----WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~v 300 (792)
T KOG1963|consen 237 --SSDDSE--------TCTLLH-----WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVV 300 (792)
T ss_pred --cccccc--------cceEEE-----ecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEE
Confidence 111111 122222 278899999999 99999999 9999999999988 4555666788999999
Q ss_pred cCCC-eEEEEECCCcEEEEeCCCCcEEEEEcC-----------cCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 004924 487 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-----------HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 554 (723)
Q Consensus 487 ~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~-----------~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~ 554 (723)
+||+ ..+....|+.|.+....+......+.| ..+-.+.+.++|.-+.++..+..|.|.+||+-+.+.+
T Consensus 301 S~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 301 SPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI 380 (792)
T ss_pred cCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee
Confidence 9999 888888899999988755444333332 2344567888997778888999999999999875443
Q ss_pred eceeeeeeecCCCC----CCCCeEEEEEccCCCEEEEE---c------CC--cEEEEECCCCc----eeEEecCCCCCCC
Q 004924 555 CSKFLHSFQTGLVP----ETTIVNHIQFHPDQIHLLSI---H------EG--QIDVYEAPTLN----HTSQLVPDKMDLP 615 (723)
Q Consensus 555 ~~~~l~~~~~~~~~----~~~~v~~l~~spdg~~l~~s---~------dg--~I~vwd~~~~~----~~~~~~~~~h~~~ 615 (723)
.. ++.....+.. ....++.++.+..|.++++. . || .++.|-..... +...+. .+|...
T Consensus 381 ~~--~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~-~PH~~~ 457 (792)
T KOG1963|consen 381 YK--LQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKIN-NPHGNA 457 (792)
T ss_pred ee--EEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEe-cCCCce
Confidence 22 2211111110 01357778888889999973 1 22 46788765332 222332 356766
Q ss_pred eEEEEEee-CCc-EEEEEeCCCcEEEEECCCCcE------EEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECC
Q 004924 616 ITYATYSC-DGK-CIYVSCKSGHVKVFDTSTLEL------RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 687 (723)
Q Consensus 616 v~~l~~sp-dg~-~l~sgs~dg~I~iwd~~~~~~------~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D 687 (723)
+...++.+ ... ..++++.||.++||-+...+- ......- . ..|..+ +++++|+. ||..|+ +|.|
T Consensus 458 ~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i---~-sy~k~~--i~a~~fs~-dGslla-~s~~ 529 (792)
T KOG1963|consen 458 FVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI---G-SYHKTP--ITALCFSQ-DGSLLA-VSFD 529 (792)
T ss_pred eEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeee---e-ccccCc--ccchhhcC-CCcEEE-EecC
Confidence 66666653 333 788999999999999843221 1111100 0 002333 44899999 886555 5578
Q ss_pred CcEEEEecCCC
Q 004924 688 GRVHVIEPLES 698 (723)
Q Consensus 688 g~v~iWd~~~~ 698 (723)
++|.|||..+.
T Consensus 530 ~~Itiwd~~~~ 540 (792)
T KOG1963|consen 530 DTITIWDYDTK 540 (792)
T ss_pred CEEEEecCCCh
Confidence 89999999883
No 194
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.66 E-value=1.6e-15 Score=157.59 Aligned_cols=249 Identities=18% Similarity=0.167 Sum_probs=175.9
Q ss_pred cCCCCCEEEE--EeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeC-CCCEEEEEECCCcEEEEeccCCccc
Q 004924 333 SLPDADSAVC--AKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQS 409 (723)
Q Consensus 333 ~spdg~~la~--~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fsp-dg~~las~s~dg~i~iWd~~~~~~~ 409 (723)
|..+.+++|+ ++..|.|-||++.. ++.+-.-.+++-.....|+.+.|.| |...||.++.||.|++|.+..+..
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~---PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl- 662 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNE---PGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL- 662 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCC---CCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCC-
Confidence 4445555554 46678999999986 5554333344423467889999998 667889999999999998764221
Q ss_pred ccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCC
Q 004924 410 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQ 489 (723)
Q Consensus 410 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~ 489 (723)
.. ........+..|...|+++.|+|-
T Consensus 663 -----------------------------~e-------------------------~~~tPe~~lt~h~eKI~slRfHPL 688 (1012)
T KOG1445|consen 663 -----------------------------PE-------------------------NEMTPEKILTIHGEKITSLRFHPL 688 (1012)
T ss_pred -----------------------------Cc-------------------------ccCCcceeeecccceEEEEEecch
Confidence 00 012334556788889999999997
Q ss_pred C--eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCC
Q 004924 490 D--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 567 (723)
Q Consensus 490 ~--~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~ 567 (723)
. .|++++.|.+|++||+.+++....+.+|++.|..++|+|+|+.+++.+.||+|+||..++++ .++. .+..
T Consensus 689 AadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e----~pv~---Eg~g 761 (1012)
T KOG1445|consen 689 AADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE----QPVY---EGKG 761 (1012)
T ss_pred hhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC----Cccc---cCCC
Confidence 7 89999999999999999999999999999999999999999999999999999999998853 2332 2222
Q ss_pred CCCCCeEEEEEccCCCEEEE-Ec----CCcEEEEECCCC--ceeEEecCCCCCCCeEEEEEeeCCc-EEEEEeCCCcEEE
Q 004924 568 PETTIVNHIQFHPDQIHLLS-IH----EGQIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKV 639 (723)
Q Consensus 568 ~~~~~v~~l~~spdg~~l~~-s~----dg~I~vwd~~~~--~~~~~~~~~~h~~~v~~l~~spdg~-~l~sgs~dg~I~i 639 (723)
+-...--.+.|.-||+++++ |. ...|.+||..+- ..+.+...+. .-.+.--.+.+|.. ++++|-.|..|++
T Consensus 762 pvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv-aps~LvP~YD~Ds~~lfltGKGD~~v~~ 840 (1012)
T KOG1445|consen 762 PVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV-APSPLVPHYDYDSNVLFLTGKGDRFVNM 840 (1012)
T ss_pred CccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc-cCccccccccCCCceEEEecCCCceEEE
Confidence 11134456788889999887 53 457899997653 3333322110 11122223445655 5567888999999
Q ss_pred EECCCCcE
Q 004924 640 FDTSTLEL 647 (723)
Q Consensus 640 wd~~~~~~ 647 (723)
|.+-....
T Consensus 841 yEv~~esP 848 (1012)
T KOG1445|consen 841 YEVIYESP 848 (1012)
T ss_pred EEecCCCc
Confidence 99875543
No 195
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.66 E-value=2.9e-15 Score=153.20 Aligned_cols=265 Identities=11% Similarity=0.108 Sum_probs=177.1
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEe-ccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWK-WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 448 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--- 448 (723)
|...|.|+.|+.+...+. +++|..+.+|. +.+... ..... ....+.+. -|-. ...-.
T Consensus 13 ~~e~vc~v~w~~~eei~~-~~dDh~~~~~~~~~~~s~----~~~~~-------p~df~pt~----~h~~---~rs~~~g~ 73 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYF-VSDDHQIFKWSDVSRDSV----EVAKL-------PDDFVPTD----MHLG---GRSSGGGK 73 (737)
T ss_pred cceeEEeecccccceEEE-eccCceEEEeecccchhh----hhhhC-------CcccCCcc----cccc---ccccCCCC
Confidence 888999999999887554 45555555554 332211 00000 00000000 0110 01111
Q ss_pred -CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEE
Q 004924 449 -GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 525 (723)
Q Consensus 449 -~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l 525 (723)
.+.++.++ ||.+.+.+- .++..+.+..|.+.+.+-.|+||| -+++++.||.|++|. ++|-...++.....+|.|+
T Consensus 74 ~~d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA 151 (737)
T ss_pred CcceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence 23455555 999998874 577777888999999999999999 999999999999999 4554444555567899999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCcee
Q 004924 526 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHT 604 (723)
Q Consensus 526 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~ 604 (723)
+|.|+.+.++.+. .+.+.+=.+... .++++ -..|. +-|.++.|+|.+..+++ |.|-..+|||.. |..+
T Consensus 152 ~W~p~S~~vl~c~-g~h~~IKpL~~n----~k~i~--WkAHD---GiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~L 220 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQ-GGHISIKPLAAN----SKIIR--WRAHD---GLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANL 220 (737)
T ss_pred EECCCCCceEEec-CCeEEEeecccc----cceeE--EeccC---cEEEEeecCccccceeecCCceeEEeeccc-Cccc
Confidence 9999887766554 345555444432 24444 34566 78999999999999999 589999999984 5554
Q ss_pred EEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEE
Q 004924 605 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 684 (723)
Q Consensus 605 ~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 684 (723)
..- ..|..+|++++|.|+ ...+.+|. ++++ +... ..+. +..++||| ||..+++|
T Consensus 221 f~S--~~~ey~ITSva~npd-~~~~v~S~-nt~R------------~~~p-------~~GS--ifnlsWS~-DGTQ~a~g 274 (737)
T KOG1524|consen 221 FTS--AAEEYAITSVAFNPE-KDYLLWSY-NTAR------------FSSP-------RVGS--IFNLSWSA-DGTQATCG 274 (737)
T ss_pred ccC--Chhccceeeeeeccc-cceeeeee-eeee------------ecCC-------Cccc--eEEEEEcC-CCceeecc
Confidence 433 357999999999999 55555543 3333 2110 1223 44999999 99999999
Q ss_pred ECCCcEEEEec
Q 004924 685 LTNGRVHVIEP 695 (723)
Q Consensus 685 s~Dg~v~iWd~ 695 (723)
+..|.|.+=-+
T Consensus 275 t~~G~v~~A~~ 285 (737)
T KOG1524|consen 275 TSTGQLIVAYA 285 (737)
T ss_pred ccCceEEEeee
Confidence 99998765433
No 196
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.5e-14 Score=142.50 Aligned_cols=292 Identities=10% Similarity=0.043 Sum_probs=203.6
Q ss_pred eeCCCcccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEE
Q 004924 322 FNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW 401 (723)
Q Consensus 322 ~~~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iW 401 (723)
....+|..+..||.++++||+|+.|-.+++|+++..-.....+.+.+.++.|.+.|.|++|....+++.+|+.+++|..-
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH 132 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence 34456677777999999999999999999999874211222233334444588999999999999999999999999998
Q ss_pred eccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCc-EE--EEEe
Q 004924 402 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ-TL--ATFA 475 (723)
Q Consensus 402 d~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~-~~--~~~~ 475 (723)
|+.+.+. +.++.. ....+.|+.+..+ ++.+++.+ ++.|.+||..... .. ....
T Consensus 133 DiEt~qs----------i~V~~~-----------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A 191 (609)
T KOG4227|consen 133 DIETKQS----------IYVANE-----------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPA 191 (609)
T ss_pred eccccee----------eeeecc-----------cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeec
Confidence 8875332 111110 1234588888888 88888888 8999999997654 21 1222
Q ss_pred CCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCc-EEEE---EcCc---CCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 004924 476 NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK-TKAK---LKGH---QNRITCLAYSLSLNVLVSSGADAQLCVW 546 (723)
Q Consensus 476 ~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~-~~~~---l~~~---~~~i~~l~~spdg~~l~s~s~dg~I~vw 546 (723)
.......++.|+|.. +|++.+..+-+-+||++... ++.. +.+- ...-..+.|+|+|+.+.+.-....-.+|
T Consensus 192 N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~ 271 (609)
T KOG4227|consen 192 NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYF 271 (609)
T ss_pred CCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEe
Confidence 344567788999988 88899999999999987532 1111 1121 2223577899999998887766666788
Q ss_pred eCCCCceeeceeeeeeecCCCC----CCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCC----------c---------
Q 004924 547 DAVGWKKLCSKFLHSFQTGLVP----ETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL----------N--------- 602 (723)
Q Consensus 547 d~~~~~~~~~~~l~~~~~~~~~----~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~----------~--------- 602 (723)
|+-+..+ ..+...|.+ ....+.+++|..|-. +++| .+-.|++|.+... .
T Consensus 272 D~~S~R~------~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~ 344 (609)
T KOG4227|consen 272 DFISQRC------FVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEI 344 (609)
T ss_pred eeecccc------eeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhh
Confidence 8876321 112222221 114567788887654 6665 5568999997521 1
Q ss_pred ----eeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECC
Q 004924 603 ----HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 603 ----~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~ 643 (723)
....++ +|..-+..+.|+|...+|++.+-.+.+++|.-.
T Consensus 345 ~i~~~~~VLr--GHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 345 FIEKELTVLR--GHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eecceeEEEe--cccccccceeecCCcceEeccchhhheeccccc
Confidence 112222 578889999999999999999999999999753
No 197
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.65 E-value=2e-16 Score=169.17 Aligned_cols=235 Identities=21% Similarity=0.264 Sum_probs=185.9
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEE
Q 004924 437 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 512 (723)
Q Consensus 437 ~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~ 512 (723)
+|..+|+|+.|. |.++++|+ |..++||.++++.++....+|.+.++.++.+.+. .+++++.|..|++|.+.++.++
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pv 267 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPV 267 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchH
Confidence 799999999999 99999999 8999999999999999999999999999999999 9999999999999999999999
Q ss_pred EEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeec--eeeeeeecCCCCCCCCeEEEEEccCCCEEEE-Ec
Q 004924 513 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS--KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH 589 (723)
Q Consensus 513 ~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~--~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~ 589 (723)
..+.||++.|++++|+|-. +.+.||++++||.+- ..... .++. ...+ .-+.++.|..++..+++ +.
T Consensus 268 svLrghtgavtaiafsP~~----sss~dgt~~~wd~r~-~~~~y~prp~~-~~~~-----~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 268 SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL-EPRIYVPRPLK-FTEK-----DLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred HHHhccccceeeeccCccc----cCCCCCceEeccccc-cccccCCCCCC-cccc-----cceeeeeccccccccccccC
Confidence 9999999999999999954 778899999999882 11111 1111 1111 46778888888888888 47
Q ss_pred CCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCC-cEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccce
Q 004924 590 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYP 668 (723)
Q Consensus 590 dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~ 668 (723)
|+.-..|.+..... +...+.-+.++.|. .+.+++-.+-.+.+|++.+|.+.+.+.+ |.+.++
T Consensus 337 d~ea~n~e~~~l~~--------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g--------hsd~~y- 399 (1113)
T KOG0644|consen 337 DGEARNHEFEQLAW--------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG--------HSDEVY- 399 (1113)
T ss_pred CcccccchhhHhhh--------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc--------ccccee-
Confidence 78877776642211 11222222332232 4666777788999999999998887753 355667
Q ss_pred EEEEEecCCCCEEEEEECCCcEEEEecCCCce
Q 004924 669 LVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 700 (723)
Q Consensus 669 ~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~ 700 (723)
.+.+||-+.....+++.||...|||+..|-+
T Consensus 400 -vLd~Hpfn~ri~msag~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 400 -VLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP 430 (1113)
T ss_pred -eeeecCCCcHhhhhccCCCceEeeecccCCc
Confidence 7889997777888999999999999987743
No 198
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.63 E-value=7.9e-14 Score=151.66 Aligned_cols=245 Identities=13% Similarity=0.108 Sum_probs=173.1
Q ss_pred CCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCcE--EEEE----eCCCCCeEEEEEcCCC---eEEEEECCCcEEEE
Q 004924 438 PKDSISCFALR---GSHLFSAS-GGKISIFSLETFQT--LATF----ANPPPIATYFILLPQD---LFAFGFDDSSILVH 504 (723)
Q Consensus 438 h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~~~~~--~~~~----~~~~~~v~~l~~~p~~---~l~sgs~dg~I~iw 504 (723)
-...|.|+.|+ ..+++.|. +|.|.+||+..+.. ...+ ..|..+++.+.|..+. -|++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 57889999999 66777777 99999999987654 2222 3788899999997765 59999999999999
Q ss_pred eCCCCcE-EE-----EEc------CcCCcEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcee---eceeeeeeecCCCC
Q 004924 505 CPCTKKT-KA-----KLK------GHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKL---CSKFLHSFQTGLVP 568 (723)
Q Consensus 505 d~~~~~~-~~-----~l~------~~~~~i~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~---~~~~l~~~~~~~~~ 568 (723)
+++.-.. .. ... .....+++++|.+ +-..+++|+.+|.|..-+-.+.+.. ..+... ....|.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~-~~~~h~- 398 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHS-TFITHI- 398 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccc-cccccC-
Confidence 8764322 11 111 1234688999988 4567999999999876433332110 111121 223344
Q ss_pred CCCCeEEEEEccCCCEEE-EEcCCcEEEEECC-CCceeEEecCCCCCCCeEEEEEeeCCc-EEEEEeCCCcEEEEECCCC
Q 004924 569 ETTIVNHIQFHPDQIHLL-SIHEGQIDVYEAP-TLNHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTL 645 (723)
Q Consensus 569 ~~~~v~~l~~spdg~~l~-~s~dg~I~vwd~~-~~~~~~~~~~~~h~~~v~~l~~spdg~-~l~sgs~dg~I~iwd~~~~ 645 (723)
++|.++.++|=+..+. ++.|.+++||... ...++..+.. +...+++++|||... .++++..||.|.+||+...
T Consensus 399 --g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~--~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 399 --GPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS--SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred --cceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh--ccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 8999999999875544 5679999999987 5556555543 466799999999765 6667778999999999765
Q ss_pred cEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCC
Q 004924 646 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 646 ~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~ 697 (723)
.......... ..... ..+.|++ .+..|++|...|++++|++..
T Consensus 475 ~~~Pv~s~~~------~~~~l--~~~~~s~-~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 475 DEEPVLSQKV------CSPAL--TRVRWSP-NGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccCCcccccc------ccccc--ceeecCC-CCcEEEEecCCCcEEEEEcCc
Confidence 4333322110 01222 3778888 899999999999999999964
No 199
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.63 E-value=2.7e-14 Score=138.08 Aligned_cols=259 Identities=14% Similarity=0.101 Sum_probs=185.6
Q ss_pred CCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCC---cEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeC-CCC
Q 004924 438 PKDSISCFALR--GSHLFSAS-GGKISIFSLETF---QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCP-CTK 509 (723)
Q Consensus 438 h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~---~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~-~~~ 509 (723)
-..+|+|.+|+ ...+|.+. ...|.||..... +..+++..|...|+.++|+|.. .|++|+.|..-++|.. ..+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 45789999999 66777777 779999988654 4678889999999999999999 9999999999999998 333
Q ss_pred --cEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE
Q 004924 510 --KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 587 (723)
Q Consensus 510 --~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~ 587 (723)
++...+..+....+++.|+|.++.+++|+....|.||-.+.... ...-+.+...+. ..|.+++|+|++-.+++
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd--WWVsKhikkPir---Stv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND--WWVSKHIKKPIR---STVTSLDWHPNNVLLAA 163 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc--eehhhhhCCccc---cceeeeeccCCcceecc
Confidence 34445566889999999999999999999999999998876321 111111222222 78999999999999888
Q ss_pred -EcCCcEEEEECC-----C-------------CceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCc-E
Q 004924 588 -IHEGQIDVYEAP-----T-------------LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE-L 647 (723)
Q Consensus 588 -s~dg~I~vwd~~-----~-------------~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~-~ 647 (723)
+.|+..+||..- . |+++.++. ...+.+..+.|+|+|..|+-.+.|+.+.+=|..... .
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~ 241 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER 241 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence 589999998732 1 22222332 237889999999999999999999999999988765 2
Q ss_pred EEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCceeeecCCCCcccccccc
Q 004924 648 RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFTDSREFSTT 716 (723)
Q Consensus 648 ~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~w~~~~~~~~g~~~~~ 716 (723)
+...... . ..-.++.|-. .+.++.++.|..=.++...... .|......+....+.+
T Consensus 242 v~~~~~~--------~--lP~ls~~~is--e~~vv~ag~~c~P~lf~~~~~~-~l~~~~~ld~p~~s~s 297 (361)
T KOG1523|consen 242 VQSVATA--------Q--LPLLSVSWIS--ENSVVAAGYDCGPVLFVTDEEG-GLSFARRLDAPKASSS 297 (361)
T ss_pred ccchhhc--------c--CCceeeEeec--CCceeecCCCCCceEEEecccc-ceeeehhcCCccccCC
Confidence 2222211 1 1223667765 3567777777555555554332 5655544443333333
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=5e-14 Score=154.10 Aligned_cols=230 Identities=12% Similarity=0.030 Sum_probs=151.5
Q ss_pred CeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCC---cEEEEeccCCcccccccceeeeeEEEe
Q 004924 347 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA---THKLWKWQSNKQSLEEENVNMESQLYQ 423 (723)
Q Consensus 347 g~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg---~i~iWd~~~~~~~~g~~~~~~~~~~~~ 423 (723)
..|.+||... ...+.+ .. |...+.+.+|||||++|+.++.++ .|.+||+
T Consensus 184 ~~i~i~d~dg----~~~~~l--t~--~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl-------------------- 235 (429)
T PRK01742 184 YEVRVADYDG----FNQFIV--NR--SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDL-------------------- 235 (429)
T ss_pred EEEEEECCCC----CCceEe--cc--CCCccccceEcCCCCEEEEEEecCCCcEEEEEeC--------------------
Confidence 5788999874 222322 22 677899999999999999887532 3545443
Q ss_pred cCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEeCCcEEEEEcCCCcE--EEEEeCCCCCeEEEEEcCCC-eEEEEE-CCC
Q 004924 424 PSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQT--LATFANPPPIATYFILLPQD-LFAFGF-DDS 499 (723)
Q Consensus 424 ~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~sdg~I~vwd~~~~~~--~~~~~~~~~~v~~l~~~p~~-~l~sgs-~dg 499 (723)
.+++. +..+.++ ...++|+||| .|+.++ .+|
T Consensus 236 ------------------------------------------~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g 270 (429)
T PRK01742 236 ------------------------------------------RSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDG 270 (429)
T ss_pred ------------------------------------------CCCceEEEecCCCc---cCceeECCCCCEEEEEEecCC
Confidence 33321 1112222 2357999999 777654 677
Q ss_pred cEE--EEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEE
Q 004924 500 SIL--VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 576 (723)
Q Consensus 500 ~I~--iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s-~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l 576 (723)
.+. +||+.+++. ..+..+...+....|+|||+.++.++ .++...+|++..... ... .. .+. . .+.
T Consensus 271 ~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~----~~~-~l-~~~---~--~~~ 338 (429)
T PRK01742 271 VLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG----GAS-LV-GGR---G--YSA 338 (429)
T ss_pred cEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC----CeE-Ee-cCC---C--CCc
Confidence 654 557766654 55666777788999999999877655 578888887654211 111 11 221 2 457
Q ss_pred EEccCCCEEEEEcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEEC--CCCcEEEEeecc
Q 004924 577 QFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT--STLELRCQINLT 654 (723)
Q Consensus 577 ~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~--~~~~~~~~~~~~ 654 (723)
.|+|||++++......+.+||+.+++..... .. ....++.|+|||++|+.++.+|.+.+|++ .+|+....+..+
T Consensus 339 ~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt-~~---~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~ 414 (429)
T PRK01742 339 QISADGKTLVMINGDNVVKQDLTSGSTEVLS-ST---FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS 414 (429)
T ss_pred cCCCCCCEEEEEcCCCEEEEECCCCCeEEec-CC---CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC
Confidence 8999999998854456777999888754322 11 12356789999999999999998888875 357767766521
Q ss_pred cccCCCCccCccceEEEEEec
Q 004924 655 AYAQPGTISLELYPLVIAAHP 675 (723)
Q Consensus 655 ~~~~~g~~~~~v~~~~v~~sp 675 (723)
.+.+. ..+|+|
T Consensus 415 --------~g~~~--~p~wsp 425 (429)
T PRK01742 415 --------DGQVK--FPAWSP 425 (429)
T ss_pred --------CCCCC--CcccCC
Confidence 33344 789998
No 201
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=2e-13 Score=133.99 Aligned_cols=282 Identities=17% Similarity=0.194 Sum_probs=187.0
Q ss_pred CCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---CC
Q 004924 374 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GS 450 (723)
Q Consensus 374 ~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~ 450 (723)
...+..++|++.-..+|++..|.+|++|+-... + ...++. .....|+|++|- +.
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst-~------------------pt~Lks----~sQrnvtclawRPlsas 154 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-C------------------PTKLKS----VSQRNVTCLAWRPLSAS 154 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCC-C------------------Cceecc----hhhcceeEEEeccCCcc
Confidence 456788999998778899999999999985421 0 001110 245779999998 77
Q ss_pred EEEEEeCCcEEEEEcCCC----cE--------EEEEe--CCCCCeEEEEEcCCC-eEEEEEC-CCcEEEEeCCCCcEEEE
Q 004924 451 HLFSASGGKISIFSLETF----QT--------LATFA--NPPPIATYFILLPQD-LFAFGFD-DSSILVHCPCTKKTKAK 514 (723)
Q Consensus 451 ~l~s~sdg~I~vwd~~~~----~~--------~~~~~--~~~~~v~~l~~~p~~-~l~sgs~-dg~I~iwd~~~~~~~~~ 514 (723)
.|+.|+.+.|.+|..... .. ...++ +| ..|+++.|.+|| .+++++. |..|.|||..++..+..
T Consensus 155 elavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 155 ELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred eeeeeecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc
Confidence 889999999999987431 11 11122 33 679999999999 8888775 56899999999877665
Q ss_pred EcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcE
Q 004924 515 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQI 593 (723)
Q Consensus 515 l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~-~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I 593 (723)
.....+.++-+.|+|||.++..++-|+..++|+... ..... ...+. +.|...+|+|+|++|+.+..|.-
T Consensus 234 ~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~er------w~lgs----grvqtacWspcGsfLLf~~sgsp 303 (445)
T KOG2139|consen 234 IPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKER------WILGS----GRVQTACWSPCGSFLLFACSGSP 303 (445)
T ss_pred cccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecc------eeccC----CceeeeeecCCCCEEEEEEcCCc
Confidence 544567789999999999999999999999995543 22111 12222 68999999999999887544555
Q ss_pred EEEECCC-Cce--------------eEEec-----CC--CCCCCeEEEEEeeCCcEEEEEeCC--------CcEEEEECC
Q 004924 594 DVYEAPT-LNH--------------TSQLV-----PD--KMDLPITYATYSCDGKCIYVSCKS--------GHVKVFDTS 643 (723)
Q Consensus 594 ~vwd~~~-~~~--------------~~~~~-----~~--~h~~~v~~l~~spdg~~l~sgs~d--------g~I~iwd~~ 643 (723)
++|.+.- ++. +..+. .+ --.+.+.+++|.|.|.+||+.-.. +.|.+||..
T Consensus 304 ~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr 383 (445)
T KOG2139|consen 304 RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTR 383 (445)
T ss_pred eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccc
Confidence 5555421 100 00000 00 014678899999999999986543 346677776
Q ss_pred CCcEEEEeecccccCCCCccCccceEEEEEecC--CCCEEEEEECCCcEEEEecC
Q 004924 644 TLELRCQINLTAYAQPGTISLELYPLVIAAHPL--EPNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 644 ~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~--d~~~las~s~Dg~v~iWd~~ 696 (723)
..-.+. +....... | .. +-.++|+|. ++.+|..+-..|.+.-|++.
T Consensus 384 ~sp~ve-ls~cg~i~-g--e~---P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 384 KSPPVE-LSYCGMIG-G--EY---PAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred ccCceE-EEeccccc-C--CC---CceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 543322 22212111 1 11 224555553 45677777777888777663
No 202
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.62 E-value=2.9e-14 Score=135.88 Aligned_cols=230 Identities=15% Similarity=0.207 Sum_probs=163.4
Q ss_pred EEEEEeCCCeEEEEeecccCCCCceeEEecCC---CCCCCceEEEEEeC-CCCEEEEEECCCcEEEEeccCCcccccccc
Q 004924 339 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPD---NSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEEN 414 (723)
Q Consensus 339 ~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~---~~h~~~V~~l~fsp-dg~~las~s~dg~i~iWd~~~~~~~~g~~~ 414 (723)
+||+. +..+|+|.+...+..-.+... |.. ..+..++++..|+. |-+++.++|-|.+..|||++++.
T Consensus 115 lLATs--~D~LRlWri~~ee~~~~~~~~-L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~------- 184 (364)
T KOG0290|consen 115 LLATS--SDFLRLWRIGDEESRVELQSV-LNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV------- 184 (364)
T ss_pred hhhcc--cCeEEEEeccCcCCceehhhh-hccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc-------
Confidence 44444 468999999843222222211 221 33678899999987 66889999999999999988531
Q ss_pred eeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCcEEEEEe---CCCCCeEEEEEc
Q 004924 415 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFA---NPPPIATYFILL 487 (723)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~~---~~~~~v~~l~~~ 487 (723)
.+.+.+.+. .|.+.|..++|. -+.+|+++ ||.|++||++.-+.-..+. ....+...++|+
T Consensus 185 -----------~~~vkTQLI--AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 185 -----------SGTVKTQLI--AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred -----------ccceeeEEE--ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 111222222 599999999999 35789988 9999999998765544443 224567889999
Q ss_pred CCC--eEEEEECC-CcEEEEeCCC-CcEEEEEcCcCCcEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCce-eeceeeee
Q 004924 488 PQD--LFAFGFDD-SSILVHCPCT-KKTKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKK-LCSKFLHS 561 (723)
Q Consensus 488 p~~--~l~sgs~d-g~I~iwd~~~-~~~~~~l~~~~~~i~~l~~spd-g~~l~s~s~dg~I~vwd~~~~~~-~~~~~l~~ 561 (723)
+++ ++|+-..| ..|.|.|++. ..++..+++|.+.|+.++|.|. +..+++++.|..+-+||+..... ....++..
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila 331 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA 331 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence 988 67765554 4799999986 5678899999999999999995 46899999999999999986321 11112221
Q ss_pred eecCCCCCCCCeEEEEEccC-CCEEEEEcCCcEEEE
Q 004924 562 FQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVY 596 (723)
Q Consensus 562 ~~~~~~~~~~~v~~l~~spd-g~~l~~s~dg~I~vw 596 (723)
...+ +.|..+.|+|. +.+++.+.++.+.+.
T Consensus 332 y~a~-----~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 332 YTAG-----GEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred hhcc-----ceeeeeeecccCCCEEEEEecCeeeEE
Confidence 2222 68999999964 578888877766553
No 203
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.62 E-value=2.8e-12 Score=135.90 Aligned_cols=325 Identities=14% Similarity=0.136 Sum_probs=197.8
Q ss_pred EEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeee
Q 004924 340 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMES 419 (723)
Q Consensus 340 la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~ 419 (723)
+++...+|.|.+.|..+ ......+ +. ....-..+.|+|||+++++++.||.|.++|+.+.+
T Consensus 9 ~V~~~~~~~v~viD~~t---~~~~~~i--~~--~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~------------ 69 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGAT---NKVVARI--PT--GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK------------ 69 (369)
T ss_dssp EEEEGGGTEEEEEETTT----SEEEEE--E---STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS------------
T ss_pred EEEecCCCEEEEEECCC---CeEEEEE--cC--CCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc------------
Confidence 35566789999999874 2223333 22 22223457899999999999999999999877432
Q ss_pred EEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEEcCCCcEEEEEeCC-------CCCeEEEEEcC
Q 004924 420 QLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANP-------PPIATYFILLP 488 (723)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~-------~~~v~~l~~~p 488 (723)
++.... ......+++++ |+++++++ .+.+.++|.++.+.++.+... ...+..+..+|
T Consensus 70 ---------~v~~i~---~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~ 137 (369)
T PF02239_consen 70 ---------VVATIK---VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP 137 (369)
T ss_dssp ---------EEEEEE----SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S
T ss_pred ---------EEEEEe---cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC
Confidence 222221 23445778888 88988887 799999999999999887632 34677888888
Q ss_pred CC-eEEEEECC-CcEEEEeCCCCcEEE-EEcCcCCcEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCceeeceeeeeeec
Q 004924 489 QD-LFAFGFDD-SSILVHCPCTKKTKA-KLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQT 564 (723)
Q Consensus 489 ~~-~l~sgs~d-g~I~iwd~~~~~~~~-~l~~~~~~i~~l~~spdg~~l~s~-s~dg~I~vwd~~~~~~~~~~~l~~~~~ 564 (723)
.. .++..-.| +.|.+.|....+.+. .............|+|++++++.+ ..+..|-++|.+++..... +..
T Consensus 138 ~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~-----i~~ 212 (369)
T PF02239_consen 138 GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVAL-----IDT 212 (369)
T ss_dssp SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEE-----EE-
T ss_pred CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEE-----eec
Confidence 88 56655554 788888877654332 222244567789999999987665 4567899999988644322 111
Q ss_pred CCCCCCCCeEEE-------EEc--cCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEE---
Q 004924 565 GLVPETTIVNHI-------QFH--PDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS--- 631 (723)
Q Consensus 565 ~~~~~~~~v~~l-------~~s--pdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sg--- 631 (723)
+..++..++..+ .|. ..+...++ -..+.+.+||..+.+.++++... ... ..+..+|+++++.+.
T Consensus 213 g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~--G~g-lFi~thP~s~~vwvd~~~ 289 (369)
T PF02239_consen 213 GKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ--GGG-LFIKTHPDSRYVWVDTFL 289 (369)
T ss_dssp SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S--SSS---EE--TT-SEEEEE-TT
T ss_pred cccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC--CCc-ceeecCCCCccEEeeccC
Confidence 211111222222 121 22233322 24446668999999999999763 444 678889999999988
Q ss_pred -eCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEE--CCCcEEEEecCCCceeeecCCCC
Q 004924 632 -CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL--TNGRVHVIEPLESEVEWGKLPFT 708 (723)
Q Consensus 632 -s~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s--~Dg~v~iWd~~~~~~~w~~~~~~ 708 (723)
...+.|.++|.++.+....+... ....+..+.|++ +|..+..+. .++.|.|||..+.+.+-..+...
T Consensus 290 ~~~~~~v~viD~~tl~~~~~i~~~---------~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~~t 359 (369)
T PF02239_consen 290 NPDADTVQVIDKKTLKVVKTITPG---------PGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDAKTLKEKKRIPVPT 359 (369)
T ss_dssp -SSHT-EEEEECCGTEEEE-HHHH---------HT--EEEEEE-T-TSSEEEEEEE--TTEEEEEETTTTEEEEEEE--S
T ss_pred CCCCceEEEEECcCcceeEEEecc---------CCCcEeccEECC-CCCEEEEEEecCCCEEEEEECCCcEEEEEEEeeC
Confidence 44589999999999877777532 122255899999 788554433 33479999999998877776666
Q ss_pred ccccc
Q 004924 709 DSREF 713 (723)
Q Consensus 709 ~~g~~ 713 (723)
+.|.+
T Consensus 360 P~G~f 364 (369)
T PF02239_consen 360 PTGKF 364 (369)
T ss_dssp EEEEE
T ss_pred CCeEe
Confidence 66665
No 204
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.61 E-value=4e-14 Score=140.99 Aligned_cols=186 Identities=18% Similarity=0.236 Sum_probs=144.1
Q ss_pred CCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCc---------EEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEE
Q 004924 438 PKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ---------TLATFANPPPIATYFILLPQD-LFAFGFDDSSILV 503 (723)
Q Consensus 438 h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~~~~---------~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~i 503 (723)
...+|..+.|. .+.+++|+ |..|++|.+..+. ....+..|...|+++.|+|+| .+|+|+.+|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 45678889998 34899999 9999999886432 234566899999999999999 9999999999999
Q ss_pred EeCC--------C--------CcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCC
Q 004924 504 HCPC--------T--------KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 567 (723)
Q Consensus 504 wd~~--------~--------~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~ 567 (723)
|... + ....+.+.+|...|..++|+|++..+++++.|..+++||+..|.. +. ....|.
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l-----~~-~~~dh~ 165 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL-----LA-ILDDHE 165 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee-----Ee-eccccc
Confidence 9765 2 123456788999999999999999999999999999999999743 22 456666
Q ss_pred CCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEec-----C----CC--------C----CCCeEEEEEeeCC
Q 004924 568 PETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLV-----P----DK--------M----DLPITYATYSCDG 625 (723)
Q Consensus 568 ~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~-----~----~~--------h----~~~v~~l~~spdg 625 (723)
..+..++|.|-++++++ +.|...+++++...+.+.... . +. | ......++|+|||
T Consensus 166 ---~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG 242 (434)
T KOG1009|consen 166 ---HYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG 242 (434)
T ss_pred ---cccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC
Confidence 78999999999999998 777767666665333222111 0 00 1 2345678999999
Q ss_pred cEEEEEe
Q 004924 626 KCIYVSC 632 (723)
Q Consensus 626 ~~l~sgs 632 (723)
.+|++.+
T Consensus 243 ~llvtPa 249 (434)
T KOG1009|consen 243 SLLVTPA 249 (434)
T ss_pred cEEEccc
Confidence 9998654
No 205
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.60 E-value=1.9e-14 Score=147.29 Aligned_cols=204 Identities=14% Similarity=0.160 Sum_probs=155.7
Q ss_pred CCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccce
Q 004924 336 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 415 (723)
Q Consensus 336 dg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~ 415 (723)
....++.+++||.+.|-+-. +..... .. .|.+.|.|-.|+|||.-|+++|.||.|++|.-. |...
T Consensus 74 ~~d~~~i~s~DGkf~il~k~-----~rVE~s-v~--AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs------GMLR- 138 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILNKS-----ARVERS-IS--AHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS------GMLR- 138 (737)
T ss_pred CcceEEEEcCCceEEEeccc-----chhhhh-hh--hhhhhhhhcccCCCCceeeeecCCceEEEEecc------chHH-
Confidence 34568888999999888754 222211 22 499999999999999999999999999999843 2211
Q ss_pred eeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eE
Q 004924 416 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF 492 (723)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l 492 (723)
.++. ....+|.|++|. .+-++.|..+.+.|=.+.....+-.++.|++-|.++.|++.. .+
T Consensus 139 ---------------Stl~--Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI 201 (737)
T KOG1524|consen 139 ---------------STVV--QNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNII 201 (737)
T ss_pred ---------------HHHh--hcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccce
Confidence 1111 367899999999 555666667778877777777777888999999999999999 99
Q ss_pred EEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCC
Q 004924 493 AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI 572 (723)
Q Consensus 493 ~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~ 572 (723)
++|+.|-..++||.. |..+..-..|..+|++++|+|+ +.++.++. .+++ +..... +.
T Consensus 202 ~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R-----------------~~~p~~---GS 258 (737)
T KOG1524|consen 202 ASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTAR-----------------FSSPRV---GS 258 (737)
T ss_pred eecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee-eeee-----------------ecCCCc---cc
Confidence 999999999999954 7777777789999999999999 55555542 2333 111122 78
Q ss_pred eEEEEEccCCCEEEEE-cCCcEE
Q 004924 573 VNHIQFHPDQIHLLSI-HEGQID 594 (723)
Q Consensus 573 v~~l~~spdg~~l~~s-~dg~I~ 594 (723)
|..++||+||..++++ ..|.+.
T Consensus 259 ifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 259 IFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred eEEEEEcCCCceeeccccCceEE
Confidence 9999999999999984 666543
No 206
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.60 E-value=1.3e-13 Score=133.45 Aligned_cols=302 Identities=13% Similarity=0.110 Sum_probs=191.6
Q ss_pred ccCCCCCEEEEE-eCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEE-CCCcEEEEeccCCccc
Q 004924 332 TSLPDADSAVCA-KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWKWQSNKQS 409 (723)
Q Consensus 332 ~~spdg~~la~~-s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s-~dg~i~iWd~~~~~~~ 409 (723)
++..|.-++..+ ..|+.|.+|++... .-.|+.-. ...++.+++|||||+.++..+ .|-.|.||.+.+...
T Consensus 55 eW~ads~~ilC~~yk~~~vqvwsl~Qp--ew~ckIde-----g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~- 126 (447)
T KOG4497|consen 55 EWKADSCHILCVAYKDPKVQVWSLVQP--EWYCKIDE-----GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG- 126 (447)
T ss_pred eeeccceeeeeeeeccceEEEEEeecc--eeEEEecc-----CCCcceeeeECCCcceEeeeecceeEEEEEEecccee-
Confidence 355666666554 56779999999852 12233221 478899999999997666554 488999998764322
Q ss_pred ccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe--C--CcEEEEEcCCCcEEEEEeCCCCCeEE
Q 004924 410 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--G--GKISIFSLETFQTLATFANPPPIATY 483 (723)
Q Consensus 410 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s--d--g~I~vwd~~~~~~~~~~~~~~~~v~~ 483 (723)
..+. ..+..+..++|+ |++.+.++ | ..+.+..-.....++.+.-..-..+.
T Consensus 127 ------------------~~~~-----~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dltg 183 (447)
T KOG4497|consen 127 ------------------YLLP-----HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTG 183 (447)
T ss_pred ------------------EEec-----ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccC
Confidence 1221 234456778888 77777776 3 22333333334445555555566678
Q ss_pred EEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee-------
Q 004924 484 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC------- 555 (723)
Q Consensus 484 l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~------- 555 (723)
+.|+||| .+++ ||.--.-.+..+. ..-.+..++|+|.++++++|+.|+.+|+.+--+.+...
T Consensus 184 ieWsPdg~~laV---------wd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s 253 (447)
T KOG4497|consen 184 IEWSPDGNWLAV---------WDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCS 253 (447)
T ss_pred ceECCCCcEEEE---------ecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchh
Confidence 8888888 6654 3311111111111 12356778888888888888888887774432211000
Q ss_pred ------------------------------------------------ceeeeeee--cCCCCCCCCeEEEEEccCCCEE
Q 004924 556 ------------------------------------------------SKFLHSFQ--TGLVPETTIVNHIQFHPDQIHL 585 (723)
Q Consensus 556 ------------------------------------------------~~~l~~~~--~~~~~~~~~v~~l~~spdg~~l 585 (723)
...++++. .....+...+.-++|++|..++
T Consensus 254 ~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~ 333 (447)
T KOG4497|consen 254 YHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYA 333 (447)
T ss_pred ccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEE
Confidence 00000000 0000012456779999999999
Q ss_pred EEEc---CCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCc
Q 004924 586 LSIH---EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI 662 (723)
Q Consensus 586 ~~s~---dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~ 662 (723)
++-. -+.+.+||++..+....+. +..+|....|+|....|+.......+++|.......+..-
T Consensus 334 aTrnd~~PnalW~Wdlq~l~l~avLi---Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP----------- 399 (447)
T KOG4497|consen 334 ATRNDKYPNALWLWDLQNLKLHAVLI---QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP----------- 399 (447)
T ss_pred eeecCCCCceEEEEechhhhhhhhhh---hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC-----------
Confidence 9843 3579999998877655553 4788999999999988888877788999988765444432
Q ss_pred cCccceEEEEEecCCCCEEEEEECCCc
Q 004924 663 SLELYPLVIAAHPLEPNRIALGLTNGR 689 (723)
Q Consensus 663 ~~~v~~~~v~~sp~d~~~las~s~Dg~ 689 (723)
..+.++..+.|+- +|..++.++.|..
T Consensus 400 ~~GF~i~~l~W~~-~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 400 KKGFNIQKLQWLQ-PGEFIVLCGKDAF 425 (447)
T ss_pred CCCceeeeEEecC-CCcEEEEEcCCce
Confidence 1124566999998 8999999998863
No 207
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.3e-14 Score=145.47 Aligned_cols=198 Identities=17% Similarity=0.128 Sum_probs=151.2
Q ss_pred EEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeee
Q 004924 482 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 560 (723)
Q Consensus 482 ~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~ 560 (723)
.+++|+++| .+++|+.||++|+|+..+...+.....|...|.++.|+|||+.|++.+.| ..+||++++|.......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t-- 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT-- 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC--
Confidence 689999999 99999999999999977777777777899999999999999999999999 99999999974332211
Q ss_pred eeecCCCCCCCCeEEEEEccCC---C-EEEEE--cCCcEEEEECCCCce---eEEecCCCCCCCeEEEEEeeCCcEEEEE
Q 004924 561 SFQTGLVPETTIVNHIQFHPDQ---I-HLLSI--HEGQIDVYEAPTLNH---TSQLVPDKMDLPITYATYSCDGKCIYVS 631 (723)
Q Consensus 561 ~~~~~~~~~~~~v~~l~~spdg---~-~l~~s--~dg~I~vwd~~~~~~---~~~~~~~~h~~~v~~l~~spdg~~l~sg 631 (723)
+.... .....+.|+.|+ . ++++. ..+.|+.||+..... ....+.-.....|++++.|+||++++.|
T Consensus 225 --~~~k~---~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 225 --PFSKD---EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred --Ccccc---hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 11111 456677888776 2 33332 446777777643221 1111111125579999999999999999
Q ss_pred eCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCC
Q 004924 632 CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 632 s~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~ 697 (723)
+.||.|-|++..+-+.+...+. .+...++.+.|+| +.+++++.+.|....|..+.-
T Consensus 300 T~dGsVai~~~~~lq~~~~vk~---------aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVKE---------AHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ccCCcEEEEEeceeeeeEeehh---------hheeeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence 9999999999998887776642 3334577999999 899999999999999988765
No 208
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.60 E-value=2.3e-13 Score=151.99 Aligned_cols=262 Identities=13% Similarity=0.086 Sum_probs=181.9
Q ss_pred CCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCC-------CcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEE
Q 004924 437 DPKDSISCFALR---GSHLFSAS-GGKISIFSLET-------FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVH 504 (723)
Q Consensus 437 ~h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~~-------~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iw 504 (723)
.|...|..++.+ +.++++|+ ||+|++|+... .+...++......+.++...+.+ .+|+|+.||.|.+.
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVL 1125 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEE
Confidence 588899998888 57999999 99999999853 12334444467789999999999 99999999999999
Q ss_pred eCCCC--c-----EEEEEcCc-CCcEEE-EEEcC-CCC-EEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCe
Q 004924 505 CPCTK--K-----TKAKLKGH-QNRITC-LAYSL-SLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 573 (723)
Q Consensus 505 d~~~~--~-----~~~~l~~~-~~~i~~-l~~sp-dg~-~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v 573 (723)
+++-. + +.+....+ .+.+.+ -+|.. .+. .++.+..-+.|..||+++...... ++ ....| +.|
T Consensus 1126 ~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~--lk-~~~~h----G~v 1198 (1431)
T KOG1240|consen 1126 RIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR--LK-NQLRH----GLV 1198 (1431)
T ss_pred EccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh--hh-cCccc----cce
Confidence 98752 1 11111111 233333 33433 333 688888899999999987432221 22 22334 789
Q ss_pred EEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeC---CcEEEEEe--CCCcEEEEECCCCcE
Q 004924 574 NHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD---GKCIYVSC--KSGHVKVFDTSTLEL 647 (723)
Q Consensus 574 ~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spd---g~~l~sgs--~dg~I~iwd~~~~~~ 647 (723)
++++.+|.+.+++.| ..|.+.+||++-+.++..+..+ +..++..+..+|- ....++++ ..+.|.+|++.+|..
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P-~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP-ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecCceeecccCc-ccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 999999999999996 8899999999999999888764 4588888888763 34555544 468899999999987
Q ss_pred EEEeecccc-------cCCC--CccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCcee-eecCCC
Q 004924 648 RCQINLTAY-------AQPG--TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE-WGKLPF 707 (723)
Q Consensus 648 ~~~~~~~~~-------~~~g--~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~-w~~~~~ 707 (723)
..++..... .+.. ...+.+....+++.. .+..+.+|+.|..||.||...++.. +..+.+
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~-~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~ 1346 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE-KNGFLLTGGSDMKIRKWDPTRPEISSYAVPGP 1346 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc-CCceeeecCCccceeeccCCCcccccccccCc
Confidence 777654311 1110 001111122333433 4568999999999999999887754 444443
No 209
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.60 E-value=2.7e-13 Score=131.31 Aligned_cols=271 Identities=14% Similarity=0.153 Sum_probs=180.7
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe
Q 004924 379 RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS 456 (723)
Q Consensus 379 ~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s 456 (723)
-++|||+|+|+|+++.- .+.|-|..+.+. .+.+. --+.|.-+.|. ..+++++-
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~---------------------~qlf~---cldki~yieW~ads~~ilC~~ 67 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL---------------------HQLFL---CLDKIVYIEWKADSCHILCVA 67 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhH---------------------HHHHH---HHHHhhheeeeccceeeeeee
Confidence 57899999999999875 555555443211 11111 12446667788 33444444
Q ss_pred --CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCC
Q 004924 457 --GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN 532 (723)
Q Consensus 457 --dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~ 532 (723)
++.|.+|++...+....+.....++.+++|+||| .+.+...+-.|.+|.+.+.+... +.-....+..++|+|||+
T Consensus 68 yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~ 146 (447)
T KOG4497|consen 68 YKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQ 146 (447)
T ss_pred eccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCc
Confidence 8999999999988888898888899999999999 66778889999999998765443 222234557788999988
Q ss_pred EEEEEeCC------------------------------------CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEE
Q 004924 533 VLVSSGAD------------------------------------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 576 (723)
Q Consensus 533 ~l~s~s~d------------------------------------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l 576 (723)
+.+.++.- ..+.|||.--. ..+.....+ -.+..+
T Consensus 147 f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le-----ykv~aYe~~-----lG~k~v 216 (447)
T KOG4497|consen 147 FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE-----YKVYAYERG-----LGLKFV 216 (447)
T ss_pred eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh-----heeeeeeec-----cceeEE
Confidence 87665431 12334442210 011101111 468899
Q ss_pred EEccCCCEEEEE-cCCcEEEEECCCCceeE--------------------------------------------------
Q 004924 577 QFHPDQIHLLSI-HEGQIDVYEAPTLNHTS-------------------------------------------------- 605 (723)
Q Consensus 577 ~~spdg~~l~~s-~dg~I~vwd~~~~~~~~-------------------------------------------------- 605 (723)
+|+|.++++++| .|+.+||.+--+.+...
T Consensus 217 ~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~Y 296 (447)
T KOG4497|consen 217 EWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIY 296 (447)
T ss_pred EeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhh
Confidence 999999999995 89888775521111000
Q ss_pred ----------EecCC----CCCCCeEEEEEeeCCcEEEEEeCC--CcEEEEECCCCcEEEEeecccccCCCCccCccceE
Q 004924 606 ----------QLVPD----KMDLPITYATYSCDGKCIYVSCKS--GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPL 669 (723)
Q Consensus 606 ----------~~~~~----~h~~~v~~l~~spdg~~l~sgs~d--g~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 669 (723)
.+++. .....+.-++||+|..|+++-... +.+.+||+..-++...+.. .++|.
T Consensus 297 E~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ---------k~pir-- 365 (447)
T KOG4497|consen 297 EQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ---------KHPIR-- 365 (447)
T ss_pred hhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh---------cccee--
Confidence 01100 012346678999999999986543 7899999998877666542 44555
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEecCC
Q 004924 670 VIAAHPLEPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 670 ~v~~sp~d~~~las~s~Dg~v~iWd~~~ 697 (723)
+..|+| ....|+.+.....+++|.+.-
T Consensus 366 af~WdP-~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 366 AFEWDP-GRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred EEEeCC-CCceEEEEcCCceEEEEcCCC
Confidence 999999 555666666677899999854
No 210
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=4.6e-13 Score=129.71 Aligned_cols=239 Identities=15% Similarity=0.222 Sum_probs=163.9
Q ss_pred CeEEEEEe--CCEEEEEeCCcEEEEEcCCCcEEEEEeCCCC--CeEEEEEcCCC-eEEEEECC------CcEEEEeCCCC
Q 004924 441 SISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPP--IATYFILLPQD-LFAFGFDD------SSILVHCPCTK 509 (723)
Q Consensus 441 ~V~~v~~s--~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~--~v~~l~~~p~~-~l~sgs~d------g~I~iwd~~~~ 509 (723)
...+++|+ ...+++|.|...+||+.+..+....-..+.+ .+.-+-|- .+ ..++|+.+ ..|.|||-...
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR-~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR-SNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh-hceEEEecCCCCCCCCCceEEEEecccC
Confidence 34558888 4566677788899999876433222222222 22222222 23 34455544 37999997777
Q ss_pred cEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E
Q 004924 510 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I 588 (723)
Q Consensus 510 ~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s 588 (723)
+++.++. ...+|.++.+.++ .+++.- .+.|+||...+.. +.+..+.....| ..+.+++-+.+..+|+. |
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~----k~l~~~et~~NP--kGlC~~~~~~~k~~LafPg 155 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNP----KLLHVIETRSNP--KGLCSLCPTSNKSLLAFPG 155 (346)
T ss_pred cEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCCh----hheeeeecccCC--CceEeecCCCCceEEEcCC
Confidence 8888776 6678999999875 444443 6789999987531 122222222211 34555554445555665 5
Q ss_pred -cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCc-EEEEECCCCcEEEEeecccccCCCCccCcc
Q 004924 589 -HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH-VKVFDTSTLELRCQINLTAYAQPGTISLEL 666 (723)
Q Consensus 589 -~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~-I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v 666 (723)
.-|.|+|-|+...+.-.......|...|.+++.+.+|..+|++|..|+ |||||..+|.++..+.. |.....+
T Consensus 156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR------G~d~A~i 229 (346)
T KOG2111|consen 156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR------GVDRADI 229 (346)
T ss_pred CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec------CCchheE
Confidence 669999999976554211222368999999999999999999999997 89999999999998864 4334456
Q ss_pred ceEEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 667 YPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 667 ~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
+ +++||| +..+||++|+-|+|+|+.+....
T Consensus 230 y--~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 230 Y--CIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred E--EEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 6 999999 89999999999999999987643
No 211
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.4e-14 Score=145.29 Aligned_cols=196 Identities=15% Similarity=0.128 Sum_probs=154.9
Q ss_pred EEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcC-
Q 004924 443 SCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG- 517 (723)
Q Consensus 443 ~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~- 517 (723)
.+++|+ |..+++++ ||++|||+..+...+.....|...|.++.|+||| .|++-+.| ..+||+.++|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 678888 78999999 9999999988888888888999999999999999 99999999 999999999977765542
Q ss_pred -cCCcEEEEEEcCCC-----CEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cC
Q 004924 518 -HQNRITCLAYSLSL-----NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE 590 (723)
Q Consensus 518 -~~~~i~~l~~spdg-----~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~d 590 (723)
.......+.|+.|+ ..++....-+.|+.||+..+.........+....+ ..|.+++.+++|++++.| .|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEeccC
Confidence 23455677887776 33334445567888877654321111222222233 579999999999999985 99
Q ss_pred CcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCC
Q 004924 591 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 644 (723)
Q Consensus 591 g~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~ 644 (723)
|.|-|++..+.+.++..+ ..|...|+.+.|+||.+++++.+.|....+..+.-
T Consensus 303 GsVai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEEeceeeeeEeeh-hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999888877665 47899999999999999999999999888887664
No 212
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.58 E-value=8e-15 Score=147.97 Aligned_cols=280 Identities=11% Similarity=0.123 Sum_probs=213.5
Q ss_pred CceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEE
Q 004924 375 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 452 (723)
Q Consensus 375 ~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l 452 (723)
-.-..+.++.+|++|+.|+..|.+-.+||.+... ...+ .-...|.++.|- .+++
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L-----~~Ei-------------------~v~Etv~Dv~~LHneq~~ 185 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL-----HFEI-------------------NVMETVRDVTFLHNEQFF 185 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeeccccee-----eeee-------------------ehhhhhhhhhhhcchHHH
Confidence 4557899999999999999999999999875332 1111 134667888887 6677
Q ss_pred EEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCC
Q 004924 453 FSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL 531 (723)
Q Consensus 453 ~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg 531 (723)
|++....+.|||- .|..++.+..+ ..|..+.|-|.. +|++++..|.++.-|+.+|+.+..+....+.+..+.-+|-+
T Consensus 186 AVAQK~y~yvYD~-~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N 263 (545)
T KOG1272|consen 186 AVAQKKYVYVYDN-NGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN 263 (545)
T ss_pred HhhhhceEEEecC-CCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc
Confidence 7777899999995 47777777655 457789999999 99999999999999999999999998888889999999988
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCC
Q 004924 532 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD 610 (723)
Q Consensus 532 ~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~ 610 (723)
..+-+|...|+|.+|..... .++..+.. |. ++|.++++.++|.|+++ |.|..++|||+++...+.++..
T Consensus 264 aVih~GhsnGtVSlWSP~sk-----ePLvKiLc-H~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t- 333 (545)
T KOG1272|consen 264 AVIHLGHSNGTVSLWSPNSK-----EPLVKILC-HR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT- 333 (545)
T ss_pred ceEEEcCCCceEEecCCCCc-----chHHHHHh-cC---CCcceEEECCCCcEEeecccccceeEeeeccccccceeec-
Confidence 89999999999999998873 44443443 44 79999999999999999 7999999999998887777653
Q ss_pred CCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECC-CCc--EEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECC
Q 004924 611 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS-TLE--LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 687 (723)
Q Consensus 611 ~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~-~~~--~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D 687 (723)
..+...+++|..| +++.+....|.||.-. .+. ....+-.|. -.+. |..+.|.| -.+.|-.|-..
T Consensus 334 --p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~------~~~~--V~~l~FcP-~EDvLGIGH~~ 400 (545)
T KOG1272|consen 334 --PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHR------CGGP--VEDLRFCP-YEDVLGIGHAG 400 (545)
T ss_pred --CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhc------cCcc--cccceecc-HHHeeeccccC
Confidence 3456678887665 3444455679999532 211 111111111 1223 44999999 78888888888
Q ss_pred CcEEEEecCCCceeee
Q 004924 688 GRVHVIEPLESEVEWG 703 (723)
Q Consensus 688 g~v~iWd~~~~~~~w~ 703 (723)
|.-.|.-+-+|++.+.
T Consensus 401 G~tsilVPGsGePN~D 416 (545)
T KOG1272|consen 401 GITSILVPGSGEPNYD 416 (545)
T ss_pred CceeEeccCCCCCCcc
Confidence 8777777777776543
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1.4e-12 Score=128.04 Aligned_cols=286 Identities=12% Similarity=0.062 Sum_probs=174.9
Q ss_pred EEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeee
Q 004924 340 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMES 419 (723)
Q Consensus 340 la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~ 419 (723)
+|++..|..|++|+-... .. .. +.. .....|.|++|-|.+..-++.+.-+-|.+|....... .....
T Consensus 113 fava~nddvVriy~ksst---~p-t~--Lks-~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln----~~r~~-- 179 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSST---CP-TK--LKS-VSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLN----ANRNI-- 179 (445)
T ss_pred hhhhccCcEEEEeccCCC---CC-ce--ecc-hhhcceeEEEeccCCcceeeeeecceeEEEEcCcccc----ccccc--
Confidence 788899999999997641 11 11 111 2467999999999764444444456788998764221 10000
Q ss_pred EEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEE
Q 004924 420 QLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAF 494 (723)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~s 494 (723)
+ .-+.-..+.+...+| .+|+++.|. |..+++++ +..|.|||+.++..+.......+.++-+.|+||+ .|++
T Consensus 180 ~---~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 180 R---MMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred c---cccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 0 000001111111245 789999999 88899998 7899999999998877665566778899999999 9999
Q ss_pred EECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCC----Ccee------eceeee----
Q 004924 495 GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG----WKKL------CSKFLH---- 560 (723)
Q Consensus 495 gs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~----~~~~------~~~~l~---- 560 (723)
++.|+..++|+....-....+.-..+.|....|+|+|+.|+.+... .-++|.+.- +... ....+.
T Consensus 256 At~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e 334 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQE 334 (445)
T ss_pred ecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeeccchh
Confidence 9999999999654332222232344589999999999886654432 223443321 1100 000010
Q ss_pred -eeecCCCCCCCCeEEEEEccCCCEEEEEcC---------CcEEEEECCCCceeEEec-CCCCCCCeEEEEEee---CCc
Q 004924 561 -SFQTGLVPETTIVNHIQFHPDQIHLLSIHE---------GQIDVYEAPTLNHTSQLV-PDKMDLPITYATYSC---DGK 626 (723)
Q Consensus 561 -~~~~~~~~~~~~v~~l~~spdg~~l~~s~d---------g~I~vwd~~~~~~~~~~~-~~~h~~~v~~l~~sp---dg~ 626 (723)
++..+...--+++.+++|.|.|.++++... ..|.+||.+..-.+.-.. +.........++|+| ++.
T Consensus 335 ~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~ 414 (445)
T KOG2139|consen 335 VTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGR 414 (445)
T ss_pred hhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCc
Confidence 011110000167889999999999998522 246778876544332221 111122344566765 567
Q ss_pred EEEEEeCCCcEEEEECC
Q 004924 627 CIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 627 ~l~sgs~dg~I~iwd~~ 643 (723)
+|..+-+.|.+.-|++.
T Consensus 415 lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 415 LLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EEEEEeccCceEeeeeE
Confidence 77777777777766653
No 214
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=3e-13 Score=148.03 Aligned_cols=206 Identities=17% Similarity=0.114 Sum_probs=143.1
Q ss_pred CcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECC---CcEEEEeCCCCcE--EEEEcCcCCcEEEEEEcCCC
Q 004924 458 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKT--KAKLKGHQNRITCLAYSLSL 531 (723)
Q Consensus 458 g~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~d---g~I~iwd~~~~~~--~~~l~~~~~~i~~l~~spdg 531 (723)
..|.+||..... .+.+..+...+.+.+|+||| .++.++.+ ..|++||+.+++. +..+.+| ...++|+|||
T Consensus 184 ~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG 259 (429)
T PRK01742 184 YEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDG 259 (429)
T ss_pred EEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCC
Confidence 589999986444 56667777889999999999 88877643 3699999988754 3333333 3468999999
Q ss_pred CEEEEEe-CCCcEEEE--eCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E-cCCcEEEEECCCC-ceeE
Q 004924 532 NVLVSSG-ADAQLCVW--DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTL-NHTS 605 (723)
Q Consensus 532 ~~l~s~s-~dg~I~vw--d~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~dg~I~vwd~~~~-~~~~ 605 (723)
+.|+.++ .+|.+.+| |+.++. +..+.. +. ..+.+..|+|||+.|+. + .++...||++... ....
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~------~~~lt~-~~---~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~ 329 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGT------PSQLTS-GA---GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS 329 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCC------eEeecc-CC---CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 9888765 67765555 665542 222222 22 46778999999998876 4 5677777776432 2222
Q ss_pred EecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEE
Q 004924 606 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 685 (723)
Q Consensus 606 ~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 685 (723)
.+ . +.. ....|+|||++|+.++.++ +.+||+.+++....... .... .++|+| ++.+|++++
T Consensus 330 ~l-~--~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~----------~~~~--~~~~sP-dG~~i~~~s 390 (429)
T PRK01742 330 LV-G--GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST----------FLDE--SPSISP-NGIMIIYSS 390 (429)
T ss_pred Ee-c--CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC----------CCCC--CceECC-CCCEEEEEE
Confidence 22 2 222 4578999999999887765 66699998875432211 1112 678999 899999999
Q ss_pred CCCcEEEEecC
Q 004924 686 TNGRVHVIEPL 696 (723)
Q Consensus 686 ~Dg~v~iWd~~ 696 (723)
.+|.+.+|.+.
T Consensus 391 ~~g~~~~l~~~ 401 (429)
T PRK01742 391 TQGLGKVLQLV 401 (429)
T ss_pred cCCCceEEEEE
Confidence 99999988864
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.57 E-value=4.5e-12 Score=122.91 Aligned_cols=214 Identities=13% Similarity=0.245 Sum_probs=156.7
Q ss_pred ceEEEEEeCCCCEEEEEECCCcEEEEeccCCcc-------ccc------------------cc---ceeeeeEEEecCCC
Q 004924 376 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ-------SLE------------------EE---NVNMESQLYQPSSK 427 (723)
Q Consensus 376 ~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~-------~~g------------------~~---~~~~~~~~~~~~~~ 427 (723)
....++|+.|...++.|.. .-.+||+.+.-.. ..| .. -..-.+.+||-...
T Consensus 7 ~~lsvs~NQD~ScFava~~-~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATD-TGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEec-CceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 4556999999988776655 5578999775332 111 11 11123578997777
Q ss_pred eeeeeccCCCCCCCeEEEEEeCCEEEEEeCCcEEEEEcC-CCcEEEEEeCCC--CCeEEEEEcCCC-eEEE-EECCCcEE
Q 004924 428 LVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLE-TFQTLATFANPP--PIATYFILLPQD-LFAF-GFDDSSIL 502 (723)
Q Consensus 428 ~~~~~~~~~~h~~~V~~v~~s~~~l~s~sdg~I~vwd~~-~~~~~~~~~~~~--~~v~~l~~~p~~-~l~s-gs~dg~I~ 502 (723)
.++..+. ...+|.++.+..+.+++.-.+.|.||... +-+.++.+.... ....+++-..+. .||. |-.-|.|.
T Consensus 86 ~~i~el~---f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQ 162 (346)
T KOG2111|consen 86 RCIIELS---FNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQ 162 (346)
T ss_pred cEEEEEE---eccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEE
Confidence 6665553 67899999999888888899999999987 456666665322 234333333333 4443 44678999
Q ss_pred EEeCCCCcE--EEEEcCcCCcEEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEc
Q 004924 503 VHCPCTKKT--KAKLKGHQNRITCLAYSLSLNVLVSSGADAQ-LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 579 (723)
Q Consensus 503 iwd~~~~~~--~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~-I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~s 579 (723)
|-|+...+. ...+..|.+.|.|++.+-+|..+|++|..|+ |||||..+|+. ++.+..|... ..|.+++||
T Consensus 163 i~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~-----l~E~RRG~d~--A~iy~iaFS 235 (346)
T KOG2111|consen 163 IVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL-----LQELRRGVDR--ADIYCIAFS 235 (346)
T ss_pred EEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE-----eeeeecCCch--heEEEEEeC
Confidence 999886555 4678889999999999999999999999998 79999999754 4445555444 789999999
Q ss_pred cCCCEEEEE-cCCcEEEEECCC
Q 004924 580 PDQIHLLSI-HEGQIDVYEAPT 600 (723)
Q Consensus 580 pdg~~l~~s-~dg~I~vwd~~~ 600 (723)
|++.+|+++ ..|+++||.++.
T Consensus 236 p~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 236 PNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCccEEEEEcCCCeEEEEEeec
Confidence 999999995 668999999875
No 216
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.57 E-value=7.6e-13 Score=128.20 Aligned_cols=229 Identities=11% Similarity=0.105 Sum_probs=165.1
Q ss_pred CCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCE
Q 004924 374 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 451 (723)
Q Consensus 374 ~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~ 451 (723)
..+|+|.+|++|++.+|.+..+..|.||....... |.. .+++. .|...|++++|+ .+.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-------------w~~-----~htls--~Hd~~vtgvdWap~snr 69 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-------------WEP-----AHTLS--EHDKIVTGVDWAPKSNR 69 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCC-------------cee-----ceehh--hhCcceeEEeecCCCCc
Confidence 56899999999999999999999999998775432 221 11111 599999999999 889
Q ss_pred EEEEe-CCcEEEEEc-CCCc--EEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEE----EEEcCcCCcE
Q 004924 452 LFSAS-GGKISIFSL-ETFQ--TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK----AKLKGHQNRI 522 (723)
Q Consensus 452 l~s~s-dg~I~vwd~-~~~~--~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~----~~l~~~~~~i 522 (723)
|++|+ |..-+||.. ..++ ....+..++..++++.|+|.+ .||+|+....|.||-.+..+-- +.-+.+.+.|
T Consensus 70 Ivtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 70 IVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred eeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence 99999 999999998 4443 344455788999999999999 9999999999999987643221 1223467889
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee---------eceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCc
Q 004924 523 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL---------CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ 592 (723)
Q Consensus 523 ~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~---------~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~ 592 (723)
.++.|+|++-.++.|+.|+..+|+..--.... ...++..+........+.+..+.|+|+|..|+- +.|..
T Consensus 150 ~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~ 229 (361)
T KOG1523|consen 150 TSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDST 229 (361)
T ss_pred eeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCc
Confidence 99999999999999999999999864210000 001111111111011278999999999999996 89999
Q ss_pred EEEEECCCCc-eeEEecCCCCCCCeEEEEEeeC
Q 004924 593 IDVYEAPTLN-HTSQLVPDKMDLPITYATYSCD 624 (723)
Q Consensus 593 I~vwd~~~~~-~~~~~~~~~h~~~v~~l~~spd 624 (723)
+.+-|..... .+..... . .-+..++.|-.+
T Consensus 230 v~~~da~~p~~~v~~~~~-~-~lP~ls~~~ise 260 (361)
T KOG1523|consen 230 VSFVDAAGPSERVQSVAT-A-QLPLLSVSWISE 260 (361)
T ss_pred eEEeecCCCchhccchhh-c-cCCceeeEeecC
Confidence 9999986554 2333322 2 356666666543
No 217
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=6.2e-13 Score=137.67 Aligned_cols=272 Identities=13% Similarity=0.098 Sum_probs=196.2
Q ss_pred ccccCCCCCEEEE-EeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcc
Q 004924 330 ESTSLPDADSAVC-AKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 408 (723)
Q Consensus 330 ~~~~spdg~~la~-~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~ 408 (723)
.+..+|||+|+.+ |.....|++||+.+. .++ ++.+.-...|...-.|-|-..++.-..|.+|.+-.-
T Consensus 56 ~ik~s~DGqY~lAtG~YKP~ikvydlanL----SLK---FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak----- 123 (703)
T KOG2321|consen 56 RIKVSPDGQYLLATGTYKPQIKVYDLANL----SLK---FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK----- 123 (703)
T ss_pred eeEecCCCcEEEEecccCCceEEEEcccc----eee---eeecccccceeEEEeccchhhheEeecCceeeehhh-----
Confidence 3448999999855 555678999999852 222 332112445555556666555666677777755321
Q ss_pred cccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEE
Q 004924 409 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFI 485 (723)
Q Consensus 409 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~ 485 (723)
.|...... -...-.+++++ ..+++.|+...|.-++++.|..+..+....+.++++.
T Consensus 124 -----------------~G~hy~~R----IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~ 182 (703)
T KOG2321|consen 124 -----------------YGRHYRTR----IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVS 182 (703)
T ss_pred -----------------cCeeeeee----cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeee
Confidence 11111100 11122345555 4455555588899999999999999988889999999
Q ss_pred EcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcC------cCC-----cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 004924 486 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG------HQN-----RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 553 (723)
Q Consensus 486 ~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~------~~~-----~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~ 553 (723)
.++.. +|++|+.+|.|..||.++...+..+.. |.+ .|+++.|+.+|-.+++|+.+|.+.+||+++.
T Consensus 183 in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~-- 260 (703)
T KOG2321|consen 183 INEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS-- 260 (703)
T ss_pred ecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC--
Confidence 99988 999999999999999998766655532 333 4999999999999999999999999999984
Q ss_pred eeceeeeeeecCCCCCCCCeEEEEEccC--CCEEEEEcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEE
Q 004924 554 LCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 631 (723)
Q Consensus 554 ~~~~~l~~~~~~~~~~~~~v~~l~~spd--g~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sg 631 (723)
.++. + ..|. ...+|..+.|.+. +..+++.....++|||-.+|+....+.+ ...+..+|+-|++.+++++
T Consensus 261 ---~pl~-~-kdh~-~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~sGm~f~A 331 (703)
T KOG2321|consen 261 ---KPLL-V-KDHG-YELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGSGMFFTA 331 (703)
T ss_pred ---Ccee-e-cccC-CccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc---cCCcCceeeecCCceEEEe
Confidence 3443 1 1221 1167899999776 4566666778899999999999888765 6679999999999999999
Q ss_pred eCCCcEEEEECCCC
Q 004924 632 CKSGHVKVFDTSTL 645 (723)
Q Consensus 632 s~dg~I~iwd~~~~ 645 (723)
-+++.+..|=+..-
T Consensus 332 ne~~~m~~yyiP~L 345 (703)
T KOG2321|consen 332 NESSKMHTYYIPSL 345 (703)
T ss_pred cCCCcceeEEcccc
Confidence 99988877766543
No 218
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=2e-12 Score=133.97 Aligned_cols=293 Identities=11% Similarity=0.103 Sum_probs=197.5
Q ss_pred CCCceEEEEEeCCCCEEEEEE-CCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCC-CeEEEEEe--
Q 004924 373 FGGRVVRLIYSHSGDFLVALT-QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD-SISCFALR-- 448 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s-~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~s-- 448 (723)
|...-+.+..||||+|+++.| ..-.|++||+..... .+ + . +-.. .|.-.-.+
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL-------KF-----E-------R-----hlDae~V~feiLsDD 105 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL-------KF-----E-------R-----HLDAEVVDFEILSDD 105 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEccccee-------ee-----e-------e-----cccccceeEEEeccc
Confidence 677788999999999876554 477899999764221 00 0 0 1122 22222222
Q ss_pred -CCEEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEE
Q 004924 449 -GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 526 (723)
Q Consensus 449 -~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~ 526 (723)
.+.+....|.+|.+.... |.. ..++- ...-..++++.-. -|++++....|+-+++..|..+..+....+.++++.
T Consensus 106 ~SK~v~L~~DR~IefHak~-G~h-y~~RI-P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~ 182 (703)
T KOG2321|consen 106 YSKSVFLQNDRTIEFHAKY-GRH-YRTRI-PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVS 182 (703)
T ss_pred hhhheEeecCceeeehhhc-Cee-eeeec-CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeee
Confidence 223333346666654322 211 11111 1112355665544 556666677899999999999999988889999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCC--CCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCce
Q 004924 527 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV--PETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH 603 (723)
Q Consensus 527 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~--~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~ 603 (723)
.++-..+|++|+.+|.|..||.++...........-...|. .....|+++.|+.+|-.+++| ++|.+.|||+++.++
T Consensus 183 in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 183 INEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP 262 (703)
T ss_pred ecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc
Confidence 99998899999999999999998743222111110000111 011459999999999999996 899999999999888
Q ss_pred eEEecCCCCCCCeEEEEEeeC--CcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEE
Q 004924 604 TSQLVPDKMDLPITYATYSCD--GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 681 (723)
Q Consensus 604 ~~~~~~~~h~~~v~~l~~spd--g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~l 681 (723)
+..-. +....+|..+.|-+. ++.|++. ....++|||-.+|+....+.+ ...++ .+++-| ++.++
T Consensus 263 l~~kd-h~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp---------t~~lN--D~C~~p-~sGm~ 328 (703)
T KOG2321|consen 263 LLVKD-HGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP---------TSDLN--DFCFVP-GSGMF 328 (703)
T ss_pred eeecc-cCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc---------cCCcC--ceeeec-CCceE
Confidence 65442 234678999999765 3444443 457899999999998888764 22355 889999 78899
Q ss_pred EEEECCCcEEEEecCC--CceeeecCC
Q 004924 682 ALGLTNGRVHVIEPLE--SEVEWGKLP 706 (723)
Q Consensus 682 as~s~Dg~v~iWd~~~--~~~~w~~~~ 706 (723)
.+|-+++.+..|=+.. +.++|+...
T Consensus 329 f~Ane~~~m~~yyiP~LGPaPrWCSfL 355 (703)
T KOG2321|consen 329 FTANESSKMHTYYIPSLGPAPRWCSFL 355 (703)
T ss_pred EEecCCCcceeEEccccCCCchhhhHH
Confidence 9999998887776654 567898744
No 219
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=6.5e-12 Score=130.44 Aligned_cols=313 Identities=11% Similarity=0.118 Sum_probs=201.2
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccc
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 412 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~ 412 (723)
+|++|+++|.+. +..+.|++.... ...... ....+.++.|||.|.||.+--. -.+|.-.+
T Consensus 42 ~S~~G~lfA~~~-~~~v~i~~~~~~---~~~lt~------~~~~~~~L~fSP~g~yL~T~e~---~~i~~~~~------- 101 (566)
T KOG2315|consen 42 YSNNGRLFAYSD-NQVVKVFEIATL---KVVLCV------ELKKTYDLLFSPKGNYLLTWEP---WAIYGPKN------- 101 (566)
T ss_pred EcCCCcEEEEEc-CCeEEEEEccCC---cEEEEe------ccceeeeeeecccccccccccc---cccccCCC-------
Confidence 788888888776 677888887742 122222 1238899999999999876211 11111110
Q ss_pred cceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC
Q 004924 413 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD 490 (723)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~ 490 (723)
.......+|+.+++.....+.. ..... ++..|+ ++.+++-- .+.+.+|+....+.+.. .-|...++.+.++|.+
T Consensus 102 -~~~pn~~v~~vet~~~~s~~q~-k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp 177 (566)
T KOG2315|consen 102 -ASNPNVLVYNVETGVQRSQIQK-KMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGP 177 (566)
T ss_pred -CCCCceeeeeeccceehhheeh-hhhcC-cccccccchhhhhhhhcceEEEEecCCccceee-eeeccceeeEEecCCC
Confidence 0012234566666433322221 12222 578888 66555554 78999999876332211 2346778899999885
Q ss_pred ---eEEE-----EECCCcEEEEeCCCCcEEEEE--c-CcCCcEEEEEEcCCCCE-EEEEe--CC---------CcEEEEe
Q 004924 491 ---LFAF-----GFDDSSILVHCPCTKKTKAKL--K-GHQNRITCLAYSLSLNV-LVSSG--AD---------AQLCVWD 547 (723)
Q Consensus 491 ---~l~s-----gs~dg~I~iwd~~~~~~~~~l--~-~~~~~i~~l~~spdg~~-l~s~s--~d---------g~I~vwd 547 (723)
.+|+ ++.-+.|+||.......-..+ + -....-..+.|++-|.- |+.++ -| .++++.+
T Consensus 178 ~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~ 257 (566)
T KOG2315|consen 178 EPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLA 257 (566)
T ss_pred CCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEE
Confidence 4443 344458999986632211111 0 01223346788887754 33222 23 3577777
Q ss_pred CCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE--E-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeC
Q 004924 548 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 624 (723)
Q Consensus 548 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~--s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spd 624 (723)
+.+.+ ..+. +.. . ++|.++.|+|+|+.+++ | .-..+.|||+ .+.++..+. .++-.++-|+|.
T Consensus 258 t~g~s----~~V~-L~k--~---GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~~v~df~----egpRN~~~fnp~ 322 (566)
T KOG2315|consen 258 TQGES----VSVP-LLK--E---GPVHDVTWSPSGREFAVVYGFMPAKVTIFNL-RGKPVFDFP----EGPRNTAFFNPH 322 (566)
T ss_pred ecCce----EEEe-cCC--C---CCceEEEECCCCCEEEEEEecccceEEEEcC-CCCEeEeCC----CCCccceEECCC
Confidence 77321 1112 222 2 79999999999998887 4 5679999999 577777773 667788999999
Q ss_pred CcEEEEEeCC---CcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEEC------CCcEEEEec
Q 004924 625 GKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT------NGRVHVIEP 695 (723)
Q Consensus 625 g~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~------Dg~v~iWd~ 695 (723)
|++|+.++-+ |.|-|||+.+.+++..+.. . +.+-+.|+| ||.++.|++. |+.++||+.
T Consensus 323 g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a---------~---~tt~~eW~P-dGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 323 GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA---------A---NTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred CCEEEEeecCCCCCceEEEeccchhhcccccc---------C---CceEEEEcC-CCcEEEEEeccccEEecCCeEEEEe
Confidence 9999987765 8999999999888887753 2 244689999 9999998874 789999998
Q ss_pred CC
Q 004924 696 LE 697 (723)
Q Consensus 696 ~~ 697 (723)
.-
T Consensus 390 tG 391 (566)
T KOG2315|consen 390 TG 391 (566)
T ss_pred cC
Confidence 43
No 220
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=9.7e-14 Score=141.08 Aligned_cols=292 Identities=14% Similarity=0.069 Sum_probs=209.0
Q ss_pred CcccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCC--CCEEEEEECCCcEEEEec
Q 004924 326 NQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATHKLWKW 403 (723)
Q Consensus 326 ~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspd--g~~las~s~dg~i~iWd~ 403 (723)
+|.....|...|..+++++.|..|.+||.... .. ...+++ ||...|....|-|. .+-+++++.||.+++=.+
T Consensus 143 GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~----~~-~l~f~S-GH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 143 GCVNTVHFNQRGDVLASGSDDLQVVVWDWVSG----SP-KLSFES-GHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred CccceeeecccCceeeccCccceEEeehhhcc----Cc-cccccc-ccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 44444456778999999999999999998742 21 222443 69999999999884 467899999999987554
Q ss_pred cCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCcEEEEEe---C
Q 004924 404 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFA---N 476 (723)
Q Consensus 404 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~~---~ 476 (723)
.. ++.+..+.....|.++|..++.- ..-|.+++ |+.+.-+|+.++.....+. .
T Consensus 217 ~~--------------------t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~ 276 (559)
T KOG1334|consen 217 LE--------------------TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREA 276 (559)
T ss_pred cc--------------------ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeecc
Confidence 32 22222222222599999998887 45677888 9999999998765443332 2
Q ss_pred CCC---CeEEEEEcCCC--eEEEEECCCcEEEEeCCCCc------EEEEEc------CcCCcEEEEEEcCCCCEEEEEeC
Q 004924 477 PPP---IATYFILLPQD--LFAFGFDDSSILVHCPCTKK------TKAKLK------GHQNRITCLAYSLSLNVLVSSGA 539 (723)
Q Consensus 477 ~~~---~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~------~~~~l~------~~~~~i~~l~~spdg~~l~s~s~ 539 (723)
+.. ...+++..|.. .+++|+.|..+++||.+.-. .+..+- .....|++++|+.++.-+.++..
T Consensus 277 ~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn 356 (559)
T KOG1334|consen 277 DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN 356 (559)
T ss_pred CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec
Confidence 333 45788889988 89999999999999976421 122222 23457999999988888888888
Q ss_pred CCcEEEEeCCCCce---ee----ceeeeeeecCCCCCCCCeEEEEE-ccCCCEEEEEcC-CcEEEEECCCCceeEEecCC
Q 004924 540 DAQLCVWDAVGWKK---LC----SKFLHSFQTGLVPETTIVNHIQF-HPDQIHLLSIHE-GQIDVYEAPTLNHTSQLVPD 610 (723)
Q Consensus 540 dg~I~vwd~~~~~~---~~----~~~l~~~~~~~~~~~~~v~~l~~-spdg~~l~~s~d-g~I~vwd~~~~~~~~~~~~~ 610 (723)
|-.|+++.-..+.. .. ...++....+|.. ...|..+-| -|...|+++|+| |.|.+|+-.+++.++.+.+.
T Consensus 357 De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN-~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD 435 (559)
T KOG1334|consen 357 DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRN-SRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD 435 (559)
T ss_pred ccceEEeccccccCCCCCCCcchhhccchhhccccc-ccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc
Confidence 99999995443321 00 0112223456642 134677765 577889988766 79999999999998888765
Q ss_pred CCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCc
Q 004924 611 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 646 (723)
Q Consensus 611 ~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~ 646 (723)
. .-|.|+.=+|--..||+.+-|..|+||-..+.+
T Consensus 436 r--~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 436 R--HVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred c--ceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence 3 388999999999999999999999999875543
No 221
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.53 E-value=1.9e-10 Score=122.09 Aligned_cols=278 Identities=16% Similarity=0.140 Sum_probs=175.6
Q ss_pred CeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEEC----CCcEEEEeccCCcccccccceeeeeEEE
Q 004924 347 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----TATHKLWKWQSNKQSLEEENVNMESQLY 422 (723)
Q Consensus 347 g~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~----dg~i~iWd~~~~~~~~g~~~~~~~~~~~ 422 (723)
+.|.+|+++.. .+.+.....-. -......++++|++++|.++.. ++.|..|++..
T Consensus 13 ~gI~~~~~d~~--~g~l~~~~~~~--~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~----------------- 71 (345)
T PF10282_consen 13 GGIYVFRFDEE--TGTLTLVQTVA--EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDP----------------- 71 (345)
T ss_dssp TEEEEEEEETT--TTEEEEEEEEE--ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEET-----------------
T ss_pred CcEEEEEEcCC--CCCceEeeeec--CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECC-----------------
Confidence 68999988532 34444332111 3456778999999999999987 46888877653
Q ss_pred ecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEEcCC-CcEEEE---Ee----------CCCCCeEEE
Q 004924 423 QPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-FQTLAT---FA----------NPPPIATYF 484 (723)
Q Consensus 423 ~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s--dg~I~vwd~~~-~~~~~~---~~----------~~~~~v~~l 484 (723)
.++.+...-...........++++ +++++++. +|.|.++++.. |..... +. .......++
T Consensus 72 --~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v 149 (345)
T PF10282_consen 72 --DTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQV 149 (345)
T ss_dssp --TTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEE
T ss_pred --CcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeE
Confidence 212211100000123344567887 88888887 79999999976 443322 21 123457899
Q ss_pred EEcCCC-eEEEEE-CCCcEEEEeCCCCc--EE--EEEc-CcCCcEEEEEEcCCCCEEEEEe-CCCcEEEEeCC--CCcee
Q 004924 485 ILLPQD-LFAFGF-DDSSILVHCPCTKK--TK--AKLK-GHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAV--GWKKL 554 (723)
Q Consensus 485 ~~~p~~-~l~sgs-~dg~I~iwd~~~~~--~~--~~l~-~~~~~i~~l~~spdg~~l~s~s-~dg~I~vwd~~--~~~~~ 554 (723)
.++|++ ++++.. ....|.+|+++... .. ..+. ........+.|+|+++++++.. .+++|.++++. ++...
T Consensus 150 ~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~ 229 (345)
T PF10282_consen 150 VFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLT 229 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCcee
Confidence 999999 666554 34489999987654 32 2222 2445678999999999876665 47789999988 44333
Q ss_pred eceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE--cCCcEEEEECC--CCce--eEEecCCCCCCCeEEEEEeeCCcEE
Q 004924 555 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP--TLNH--TSQLVPDKMDLPITYATYSCDGKCI 628 (723)
Q Consensus 555 ~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s--~dg~I~vwd~~--~~~~--~~~~~~~~h~~~v~~l~~spdg~~l 628 (723)
....+.+++.+... ......++++|||++|+++ ..+.|.+|++. +++. +..+.. .......++++|+|++|
T Consensus 230 ~~~~~~~~~~~~~~-~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g~~l 306 (345)
T PF10282_consen 230 EIQTISTLPEGFTG-ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDGRYL 306 (345)
T ss_dssp EEEEEESCETTSCS-SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTSSEE
T ss_pred EEEEeeeccccccc-cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC--CCCCccEEEEeCCCCEE
Confidence 33333333332211 1257899999999999985 56789999993 3443 333332 14558899999999999
Q ss_pred EEEeC-CCcEEEEEC--CCCcEEEE
Q 004924 629 YVSCK-SGHVKVFDT--STLELRCQ 650 (723)
Q Consensus 629 ~sgs~-dg~I~iwd~--~~~~~~~~ 650 (723)
+++.. ++.|.+|++ .+|.+...
T Consensus 307 ~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 307 YVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEE
T ss_pred EEEecCCCeEEEEEEeCCCCcEEEe
Confidence 98875 578999876 57765544
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=6.9e-12 Score=137.00 Aligned_cols=169 Identities=10% Similarity=0.055 Sum_probs=111.7
Q ss_pred eEEEEEcCCC-eEEEE-ECCC--cEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCC-Cc--EEEEeCCCCce
Q 004924 481 ATYFILLPQD-LFAFG-FDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-AQ--LCVWDAVGWKK 553 (723)
Q Consensus 481 v~~l~~~p~~-~l~sg-s~dg--~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~d-g~--I~vwd~~~~~~ 553 (723)
+....|+||| .|+.. +.+| .|++||+.+++... +..+...+....|+|||+.|+..+.+ +. |.++|+.++..
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 3457899999 66644 4454 59999999887654 43344567889999999998877754 44 55556666432
Q ss_pred eeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-Ec-C--CcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEE
Q 004924 554 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-E--GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY 629 (723)
Q Consensus 554 ~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~-d--g~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~ 629 (723)
.. +... . .......|+|||++++. +. + ..|++||+.+++.. .+.. ........|+|||++|+
T Consensus 324 ---~~---lt~~-~---~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~---~~~~~~p~~SpDG~~i~ 389 (429)
T PRK03629 324 ---QR---ITWE-G---SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD---TFLDETPSIAPNGTMVI 389 (429)
T ss_pred ---EE---eecC-C---CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC---CCCCCCceECCCCCEEE
Confidence 11 2111 1 34567899999999986 42 2 36899999887643 3432 12234678999999999
Q ss_pred EEeCCCc---EEEEECCCCcEEEEeecccccCCCCccCccceEEEEEec
Q 004924 630 VSCKSGH---VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 675 (723)
Q Consensus 630 sgs~dg~---I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp 675 (723)
.++.++. ++++++. |.....+.. +.+.+. ..+|+|
T Consensus 390 ~~s~~~~~~~l~~~~~~-G~~~~~l~~--------~~~~~~--~p~Wsp 427 (429)
T PRK03629 390 YSSSQGMGSVLNLVSTD-GRFKARLPA--------TDGQVK--FPAWSP 427 (429)
T ss_pred EEEcCCCceEEEEEECC-CCCeEECcc--------CCCCcC--CcccCC
Confidence 9887754 7777874 444455542 133344 788887
No 223
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=8.1e-12 Score=137.18 Aligned_cols=214 Identities=9% Similarity=0.021 Sum_probs=147.1
Q ss_pred cEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEEC---CCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEE
Q 004924 459 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 534 (723)
Q Consensus 459 ~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~---dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l 534 (723)
.|.++|.. |...+.+..+...+.+.+|+||| .|+..+. +..|++||+.+++.. .+..+.+.+....|+|||+.|
T Consensus 183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred EEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE
Confidence 68888875 45556677778889999999999 7776653 458999999988653 455566677889999999887
Q ss_pred E-EEeCCCc--EEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E-cC--CcEEEEECCCCceeEEe
Q 004924 535 V-SSGADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HE--GQIDVYEAPTLNHTSQL 607 (723)
Q Consensus 535 ~-s~s~dg~--I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~d--g~I~vwd~~~~~~~~~~ 607 (723)
+ +.+.++. |++||+.++.. ..+.. +. .......|+|||+.|+. + .+ ..|++||+.+++.. .+
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~------~~Lt~-~~---~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~l 329 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTT------TRLTD-SP---AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RI 329 (435)
T ss_pred EEEEecCCCceEEEEECCCCce------EEccC-CC---CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Ee
Confidence 5 4555555 77789887532 21222 21 34567899999998886 3 23 36889998766543 33
Q ss_pred cCCCCCCCeEEEEEeeCCcEEEEEeCC---CcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEE
Q 004924 608 VPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 684 (723)
Q Consensus 608 ~~~~h~~~v~~l~~spdg~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 684 (723)
.. +...+....|||||++|+..+.+ ..|.+||..++.. ..+.. ...+. ...|+| ||+.|+..
T Consensus 330 t~--~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~---------~~~~~--~p~~sp-DG~~i~~~ 394 (435)
T PRK05137 330 SF--GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS---------GFLVE--GPTWAP-NGRVIMFF 394 (435)
T ss_pred ec--CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC---------CCCCC--CCeECC-CCCEEEEE
Confidence 22 24456678999999999876643 3688899866543 33321 11233 789999 88888766
Q ss_pred ECC------CcEEEEecCCCce
Q 004924 685 LTN------GRVHVIEPLESEV 700 (723)
Q Consensus 685 s~D------g~v~iWd~~~~~~ 700 (723)
+.+ ..+.++++..+..
T Consensus 395 ~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 395 RQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred EccCCCCCcceEEEEECCCCce
Confidence 543 2577778765543
No 224
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.50 E-value=1.4e-12 Score=134.25 Aligned_cols=162 Identities=12% Similarity=0.124 Sum_probs=121.0
Q ss_pred EEEEEe-CCcEEEEEcCCCcEEEEEe----CCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCC--------------C
Q 004924 451 HLFSAS-GGKISIFSLETFQTLATFA----NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT--------------K 509 (723)
Q Consensus 451 ~l~s~s-dg~I~vwd~~~~~~~~~~~----~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~--------------~ 509 (723)
-+..|- -|.|.+.|....+..+.+. -....|+|+.|-|.+ .++++-.+|.+++||..- +
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~ 266 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDG 266 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCC
Confidence 455555 7888888875532222221 223679999999987 888888999999997531 1
Q ss_pred --------------cEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEE
Q 004924 510 --------------KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNH 575 (723)
Q Consensus 510 --------------~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 575 (723)
.++..+.-..+.|+.++|+|||++|++.+.||.+||||..+.+... +..... +...|
T Consensus 267 ~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg------~mkSYF---GGLLC 337 (636)
T KOG2394|consen 267 DQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG------VMKSYF---GGLLC 337 (636)
T ss_pred CeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHH------HHHhhc---cceEE
Confidence 1111222234578899999999999999999999999999843222 223333 67999
Q ss_pred EEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEee
Q 004924 576 IQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 623 (723)
Q Consensus 576 l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~sp 623 (723)
++|||||++|++ |.|.-|.||.+..++.+..- ++|..+|..++|.|
T Consensus 338 vcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG--qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 338 VCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG--QGHKSWVSVVAFDP 384 (636)
T ss_pred EEEcCCccEEEecCCcceEEEEEeccceEEEec--cccccceeeEeecc
Confidence 999999999999 59999999999988887654 46899999999987
No 225
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.2e-11 Score=135.79 Aligned_cols=217 Identities=15% Similarity=0.080 Sum_probs=141.1
Q ss_pred eEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCC
Q 004924 348 KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK 427 (723)
Q Consensus 348 ~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~ 427 (723)
.|.+||.. ....+.+. .|...+.+.+|||||+.|+..+..+.
T Consensus 183 ~l~~~d~d----g~~~~~lt----~~~~~v~~p~wSpDG~~lay~s~~~g------------------------------ 224 (435)
T PRK05137 183 RLAIMDQD----GANVRYLT----DGSSLVLTPRFSPNRQEITYMSYANG------------------------------ 224 (435)
T ss_pred EEEEECCC----CCCcEEEe----cCCCCeEeeEECCCCCEEEEEEecCC------------------------------
Confidence 56677765 34444443 26788999999999999888764210
Q ss_pred eeeeeccCCCCCCCeEEEEEeCCEEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEE-EEECCC--cEEE
Q 004924 428 LVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDS--SILV 503 (723)
Q Consensus 428 ~~~~~~~~~~h~~~V~~v~~s~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~-sgs~dg--~I~i 503 (723)
+..|.+||+.+++. ..+..+.+.+.+.+|+||| .++ +.+.++ .|++
T Consensus 225 -----------------------------~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 274 (435)
T PRK05137 225 -----------------------------RPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYT 274 (435)
T ss_pred -----------------------------CCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEE
Confidence 12233444444433 1223334455678999999 654 555555 4888
Q ss_pred EeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEcc
Q 004924 504 HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 580 (723)
Q Consensus 504 wd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~-dg--~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~sp 580 (723)
||+.+++. ..+..+........|+|||+.++..+. +| .|++||+.++.. ..+..+. ..+....|+|
T Consensus 275 ~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~------~~lt~~~----~~~~~~~~Sp 343 (435)
T PRK05137 275 MDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP------RRISFGG----GRYSTPVWSP 343 (435)
T ss_pred EECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe------EEeecCC----CcccCeEECC
Confidence 89887765 445556666778999999999887764 33 588888876432 1122221 3566788999
Q ss_pred CCCEEEE-Ec-C--CcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC------CcEEEEECCCCcE
Q 004924 581 DQIHLLS-IH-E--GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS------GHVKVFDTSTLEL 647 (723)
Q Consensus 581 dg~~l~~-s~-d--g~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d------g~I~iwd~~~~~~ 647 (723)
||+.|+. +. . ..|.+||+.++. ...+.. ...+....|+|||+.|+..+.+ ..++++++..+..
T Consensus 344 dG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~---~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 344 RGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS---GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCc-eEeccC---CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 9999987 32 2 368889986554 334432 2346788999999998865543 3688888876654
No 226
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=3.5e-10 Score=112.48 Aligned_cols=279 Identities=11% Similarity=0.065 Sum_probs=182.9
Q ss_pred CCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECC---CcEEEEeccCCcccccccceeeeeEEE
Q 004924 346 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLY 422 (723)
Q Consensus 346 dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~d---g~i~iWd~~~~~~~~g~~~~~~~~~~~ 422 (723)
...|.+|++.+. .+.+....+-. +.+.++.++|+|++++|.++..+ |.|..|. |
T Consensus 15 s~gI~v~~ld~~--~g~l~~~~~v~--~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~-------------------i 71 (346)
T COG2706 15 SQGIYVFNLDTK--TGELSLLQLVA--ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYR-------------------I 71 (346)
T ss_pred CCceEEEEEeCc--ccccchhhhcc--ccCCCceEEECCCCCEEEEEEecCCcCcEEEEE-------------------E
Confidence 456999999843 34433332322 78899999999999999998775 5565555 4
Q ss_pred ecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEEcCC-CcEEEE--EeCCCCC----------eEEEE
Q 004924 423 QPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-FQTLAT--FANPPPI----------ATYFI 485 (723)
Q Consensus 423 ~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s--dg~I~vwd~~~-~~~~~~--~~~~~~~----------v~~l~ 485 (723)
|..+|.+...-.......+-..++.+ |++++++. .|.|.++-+.. |..... ...|.+. +.+..
T Consensus 72 D~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~ 151 (346)
T COG2706 72 DPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSAN 151 (346)
T ss_pred cCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceee
Confidence 44444433211111122333678888 88999998 69999999865 433222 1233333 78889
Q ss_pred EcCCC-eEEEEEC-CCcEEEEeCCCCcEEEEEc---CcCCcEEEEEEcCCCCEEEEEeC-CCcEEEEeCCC--Cceeece
Q 004924 486 LLPQD-LFAFGFD-DSSILVHCPCTKKTKAKLK---GHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVG--WKKLCSK 557 (723)
Q Consensus 486 ~~p~~-~l~sgs~-dg~I~iwd~~~~~~~~~l~---~~~~~i~~l~~spdg~~l~s~s~-dg~I~vwd~~~--~~~~~~~ 557 (723)
+.|++ ++++..- --.|.+|++..|.....-. .....-..|.|+|++++..+.++ +++|.+|..+. ++....+
T Consensus 152 ~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ 231 (346)
T COG2706 152 FTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ 231 (346)
T ss_pred eCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee
Confidence 99999 6666553 2379999999775442211 23456788999999999877664 88999999887 4443444
Q ss_pred eeeeeecCCCCCCCCeEEEEEccCCCEEEEE--cCCcEEEEECCC--CceeEEecCCCCCCCeEEEEEeeCCcEEEEEeC
Q 004924 558 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPT--LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 633 (723)
Q Consensus 558 ~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s--~dg~I~vwd~~~--~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~ 633 (723)
.+.+++.... .......+.++|||++|+++ ....|.+|.+.. +++...-....+........|+++|++|+++.+
T Consensus 232 ~i~tlP~dF~-g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 232 TIDTLPEDFT-GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred eeccCccccC-CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence 4444444322 12567789999999999997 344788887763 332211111123555788999999999999887
Q ss_pred C-CcEEEEECC--CCcEE
Q 004924 634 S-GHVKVFDTS--TLELR 648 (723)
Q Consensus 634 d-g~I~iwd~~--~~~~~ 648 (723)
+ ..|.+|... +|++-
T Consensus 311 ~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 311 KSDNITVFERDKETGRLT 328 (346)
T ss_pred CCCcEEEEEEcCCCceEE
Confidence 6 468888665 55543
No 227
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.2e-11 Score=135.05 Aligned_cols=210 Identities=12% Similarity=0.117 Sum_probs=141.7
Q ss_pred cEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEE---CCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEE
Q 004924 459 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF---DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 534 (723)
Q Consensus 459 ~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs---~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l 534 (723)
.|.+||...... +.+..+...+.+.+|+||| .++..+ .+..|++|++.+|+... +....+.+..+.|+|||+.|
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEE
Confidence 688888865433 4445566788999999999 777554 23479999998886433 22233344568999999988
Q ss_pred EEE-eCCC--cEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-Ec-CC--cEEEEECCCCceeEEe
Q 004924 535 VSS-GADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-EG--QIDVYEAPTLNHTSQL 607 (723)
Q Consensus 535 ~s~-s~dg--~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~-dg--~I~vwd~~~~~~~~~~ 607 (723)
+.. +.+| .|++||+.++.. ..+..+. ..+....|+|||+.|+. +. ++ .|+++|+.+++.. .+
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~------~~lt~~~----~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~l 326 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQI------RQVTDGR----SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RI 326 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCE------EEccCCC----CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Ee
Confidence 765 4444 588999988532 2122222 45678999999998876 43 33 5666677766543 33
Q ss_pred cCCCCCCCeEEEEEeeCCcEEEEEeCC---CcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEE
Q 004924 608 VPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 684 (723)
Q Consensus 608 ~~~~h~~~v~~l~~spdg~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 684 (723)
.. +.......+|+|||++|+..+.+ ..|++||+.+++.. .+.. ..... ...|+| ||.+|+.+
T Consensus 327 t~--~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~---------~~~~~--~p~~Sp-DG~~i~~~ 391 (429)
T PRK03629 327 TW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD---------TFLDE--TPSIAP-NGTMVIYS 391 (429)
T ss_pred ec--CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC---------CCCCC--CceECC-CCCEEEEE
Confidence 22 23445678999999999876543 35889999988743 3321 11122 578999 89999999
Q ss_pred ECCCc---EEEEecC
Q 004924 685 LTNGR---VHVIEPL 696 (723)
Q Consensus 685 s~Dg~---v~iWd~~ 696 (723)
+.++. +.+|++.
T Consensus 392 s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 392 SSQGMGSVLNLVSTD 406 (429)
T ss_pred EcCCCceEEEEEECC
Confidence 88764 6677773
No 228
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.48 E-value=1.3e-13 Score=139.24 Aligned_cols=265 Identities=10% Similarity=0.158 Sum_probs=198.0
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccc
Q 004924 331 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 410 (723)
Q Consensus 331 ~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~ 410 (723)
..++.+|.+++.++..|.+-.+|..+ ..+..- +. -...|..+.|-.+.+++|.+-. ..+.|||-...+.
T Consensus 135 ~~ytrnGrhlllgGrKGHlAa~Dw~t----~~L~~E-i~---v~Etv~Dv~~LHneq~~AVAQK-~y~yvYD~~GtEl-- 203 (545)
T KOG1272|consen 135 LDYTRNGRHLLLGGRKGHLAAFDWVT----KKLHFE-IN---VMETVRDVTFLHNEQFFAVAQK-KYVYVYDNNGTEL-- 203 (545)
T ss_pred eeecCCccEEEecCCccceeeeeccc----ceeeee-ee---hhhhhhhhhhhcchHHHHhhhh-ceEEEecCCCcEE--
Confidence 34788999999999999999999874 222211 11 2568999999999998877654 5677777432111
Q ss_pred cccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEc
Q 004924 411 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 487 (723)
Q Consensus 411 g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~ 487 (723)
. |+ .....|..+.|- --+|++++ .|.++.-|+.+|+.+..+....+.+..++-+
T Consensus 204 ----H-------------Cl------k~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 204 ----H-------------CL------KRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN 260 (545)
T ss_pred ----e-------------eh------hhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence 0 11 134567778887 34566666 7999999999999999999888899999999
Q ss_pred CCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCC
Q 004924 488 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 566 (723)
Q Consensus 488 p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~ 566 (723)
|-+ .+-+|..+|+|.+|.....+++..+..|.++|.++++.++|.++++.+.|..++|||+++.. .+.++...
T Consensus 261 P~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~-----ql~t~~tp- 334 (545)
T KOG1272|consen 261 PYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY-----QLHTYRTP- 334 (545)
T ss_pred CccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc-----ccceeecC-
Confidence 999 99999999999999999999998888899999999999999999999999999999999842 33333332
Q ss_pred CCCCCCeEEEEEccCCCEEEEEcCCcEEEEEC-CC--CceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEE
Q 004924 567 VPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA-PT--LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF 640 (723)
Q Consensus 567 ~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~-~~--~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iw 640 (723)
.+...+++|..| .||.|....+.||.= -. +.....+..+.-.++|..+.|.|-...|-.|...|.-.+.
T Consensus 335 ----~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 335 ----HPASNLSLSQKG-LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred ----CCcccccccccc-ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence 456788888654 566677778999952 22 1222222222235689999999988877777666644443
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=7.9e-12 Score=137.09 Aligned_cols=212 Identities=17% Similarity=0.084 Sum_probs=143.9
Q ss_pred CcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECC---CcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCE
Q 004924 458 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 533 (723)
Q Consensus 458 g~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~d---g~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~ 533 (723)
..|.+||.. +...+.+..+...+.+.+|+||| .|+..+.+ ..|++||+.+++... +....+...+..|+|||+.
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 368889985 44455566667788899999999 88877643 469999998886543 3334445567899999987
Q ss_pred EE-EEeCCC--cEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE--cCC--cEEEEECCCCceeEE
Q 004924 534 LV-SSGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEG--QIDVYEAPTLNHTSQ 606 (723)
Q Consensus 534 l~-s~s~dg--~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s--~dg--~I~vwd~~~~~~~~~ 606 (723)
++ +.+.+| .|++||+.+++. ..+.. +. ......+|+|||+.|+.+ .++ .|+++|+.+++.. .
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~------~~lt~-~~---~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~ 330 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQL------TRLTN-HF---GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-R 330 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCe------EECcc-CC---CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-E
Confidence 75 445555 599999988642 11221 21 344678999999998874 334 4778888776643 2
Q ss_pred ecCCCCCCCeEEEEEeeCCcEEEEEeCCC---cEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEE
Q 004924 607 LVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 683 (723)
Q Consensus 607 ~~~~~h~~~v~~l~~spdg~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las 683 (723)
+... .......+|||||++|+..+.++ .|++||+.+++.. .+.. ..... ...|+| ||++++.
T Consensus 331 lt~~--g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~---------~~~~~--~p~~sp-dG~~i~~ 395 (433)
T PRK04922 331 LTFQ--GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP---------GSLDE--SPSFAP-NGSMVLY 395 (433)
T ss_pred eecC--CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC---------CCCCC--CceECC-CCCEEEE
Confidence 3221 33445789999999998765443 6999999888754 3321 11122 578999 8988777
Q ss_pred EECC---CcEEEEecCC
Q 004924 684 GLTN---GRVHVIEPLE 697 (723)
Q Consensus 684 ~s~D---g~v~iWd~~~ 697 (723)
.+.+ +.|.++++..
T Consensus 396 ~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 396 ATREGGRGVLAAVSTDG 412 (433)
T ss_pred EEecCCceEEEEEECCC
Confidence 6653 3577777744
No 230
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.48 E-value=3.1e-12 Score=124.93 Aligned_cols=308 Identities=16% Similarity=0.174 Sum_probs=191.7
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe----
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---- 448 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---- 448 (723)
..+-|.++.|..+|.+||+|..+|.|.++.-..... |...........+++-..+ +.+ .-...|..+.|.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~--~ey~~~t~fqshepEFDYL-kSl---eieEKinkIrw~~~~n 97 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK--GEYNFQTEFQSHEPEFDYL-KSL---EIEEKINKIRWLDDGN 97 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccc--cceeeeeeeeccCcccchh-hhh---hhhhhhhhceecCCCC
Confidence 467889999999999999999999999987543211 1000000000000111101 101 135678889998
Q ss_pred -CCEEEEEeCCcEEEEEcCCCcE-----------------------------------EEEE-eCCCCCeEEEEEcCCC-
Q 004924 449 -GSHLFSASGGKISIFSLETFQT-----------------------------------LATF-ANPPPIATYFILLPQD- 490 (723)
Q Consensus 449 -~~~l~s~sdg~I~vwd~~~~~~-----------------------------------~~~~-~~~~~~v~~l~~~p~~- 490 (723)
..+|+++.|.+|++|.+..... .+.+ .+|.-.|.++.++.|+
T Consensus 98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E 177 (433)
T KOG1354|consen 98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE 177 (433)
T ss_pred ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc
Confidence 2356666699999998743211 1111 2566778999999999
Q ss_pred eEEEEECCCcEEEEeCCCCcEE---EEEcCc-----CCcEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeecee--e
Q 004924 491 LFAFGFDDSSILVHCPCTKKTK---AKLKGH-----QNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKF--L 559 (723)
Q Consensus 491 ~l~sgs~dg~I~iwd~~~~~~~---~~l~~~-----~~~i~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~--l 559 (723)
.++++ .|=.|-+|++.-.... -.++.+ ..-|++..|+| ..+.++..+..|+|++.|++... ++... +
T Consensus 178 t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~a-LCd~hsKl 255 (433)
T KOG1354|consen 178 TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSA-LCDAHSKL 255 (433)
T ss_pred eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhh-hhcchhhh
Confidence 76665 4778999997643221 122222 35688899999 45788889999999999998521 11000 0
Q ss_pred e---------eeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEEC-CCCceeEEecCCCC----------CCC---e
Q 004924 560 H---------SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA-PTLNHTSQLVPDKM----------DLP---I 616 (723)
Q Consensus 560 ~---------~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~-~~~~~~~~~~~~~h----------~~~---v 616 (723)
. .+..+- ...|..+.|+++|+++++-.--+|++||+ ...+++.++..+.+ ... -
T Consensus 256 fEepedp~~rsffsei---IsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdK 332 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEI---ISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDK 332 (433)
T ss_pred hccccCCcchhhHHHH---hhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhe
Confidence 0 011111 25788999999999999866679999999 45666666654321 122 2
Q ss_pred EEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEE-Eee-------------cccccCCCCc-cCcc---------ceEEEE
Q 004924 617 TYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC-QIN-------------LTAYAQPGTI-SLEL---------YPLVIA 672 (723)
Q Consensus 617 ~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~-~~~-------------~~~~~~~g~~-~~~v---------~~~~v~ 672 (723)
..++|+.++.++++|+..+..++++...|.... ++. .......|.+ ...+ .+...+
T Consensus 333 Fec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~a 412 (433)
T KOG1354|consen 333 FECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTA 412 (433)
T ss_pred eEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhc
Confidence 468899999999999999999999976554321 111 0001111211 0011 145789
Q ss_pred EecCCCCEEEEEECCCcEEEE
Q 004924 673 AHPLEPNRIALGLTNGRVHVI 693 (723)
Q Consensus 673 ~sp~d~~~las~s~Dg~v~iW 693 (723)
||| ..+.+|++..+ .++||
T Consensus 413 Whp-~en~ia~aatn-nlyif 431 (433)
T KOG1354|consen 413 WHP-KENSIAVAATN-NLYIF 431 (433)
T ss_pred cCC-ccceeeeeecC-ceEEe
Confidence 999 77888888655 46665
No 231
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.47 E-value=5.4e-11 Score=126.20 Aligned_cols=284 Identities=17% Similarity=0.164 Sum_probs=170.5
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEEC-CCcEEEEeccCCccccc
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLE 411 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~-dg~i~iWd~~~~~~~~g 411 (723)
++|||+++++++.||.|.++|+.+ ......+. -.....++++|+||++++++.. ++.+.++|..+.+.
T Consensus 44 ~s~Dgr~~yv~~rdg~vsviD~~~---~~~v~~i~-----~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~--- 112 (369)
T PF02239_consen 44 FSPDGRYLYVANRDGTVSVIDLAT---GKVVATIK-----VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP--- 112 (369)
T ss_dssp -TT-SSEEEEEETTSEEEEEETTS---SSEEEEEE------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--E---
T ss_pred ecCCCCEEEEEcCCCeEEEEECCc---ccEEEEEe-----cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccc---
Confidence 899999999999999999999985 33444443 3456789999999999998764 78999998764322
Q ss_pred ccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-C-CcEEEEEcCCCcEEE-EEeCCCCCeEEEEE
Q 004924 412 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G-GKISIFSLETFQTLA-TFANPPPIATYFIL 486 (723)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-d-g~I~vwd~~~~~~~~-~~~~~~~~v~~l~~ 486 (723)
...+. ++... .......+.++..+ ...++..- | +.|.+.|....+... .............|
T Consensus 113 --v~~I~-------~~~~~----~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~ 179 (369)
T PF02239_consen 113 --VKTIP-------TGGMP----VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGF 179 (369)
T ss_dssp --EEEEE---------EE-----TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE
T ss_pred --eeecc-------ccccc----ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccccccccccc
Confidence 11111 00000 00134456677666 44444444 4 888888876654332 22234456678899
Q ss_pred cCCC-eEEE-EECCCcEEEEeCCCCcEEEEEcC----cCCcEEEEEEcCC----------CCEEEEEeCCCcEEEEeCCC
Q 004924 487 LPQD-LFAF-GFDDSSILVHCPCTKKTKAKLKG----HQNRITCLAYSLS----------LNVLVSSGADAQLCVWDAVG 550 (723)
Q Consensus 487 ~p~~-~l~s-gs~dg~I~iwd~~~~~~~~~l~~----~~~~i~~l~~spd----------g~~l~s~s~dg~I~vwd~~~ 550 (723)
+|++ ++++ ...+..|-++|..+++.+..+.. |..+...+ .+|. +...++.-....+.+||..+
T Consensus 180 dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~ 258 (369)
T PF02239_consen 180 DPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA 258 (369)
T ss_dssp -TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB
T ss_pred CcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhc
Confidence 9999 5554 45677899999999887766532 44444433 2222 22222222233555677777
Q ss_pred CceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-----cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCC
Q 004924 551 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-----HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG 625 (723)
Q Consensus 551 ~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-----~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg 625 (723)
++ .++++... +.-.-+..+|+++++.+. ..+.|.++|.++.+.+.++.... ...+..+.|++||
T Consensus 259 wk-----vv~~I~~~-----G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~-~~~~~h~ef~~dG 327 (369)
T PF02239_consen 259 WK-----VVKTIPTQ-----GGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP-GKRVVHMEFNPDG 327 (369)
T ss_dssp TS-----EEEEEE-S-----SSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH-T--EEEEEE-TTS
T ss_pred Ce-----EEEEEECC-----CCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC-CCcEeccEECCCC
Confidence 53 34434433 233788889999999985 33689999999998887775422 3459999999999
Q ss_pred cEEEEEeCC--CcEEEEECCCCcEEEEee
Q 004924 626 KCIYVSCKS--GHVKVFDTSTLELRCQIN 652 (723)
Q Consensus 626 ~~l~sgs~d--g~I~iwd~~~~~~~~~~~ 652 (723)
+++..+..+ |.|.+||..+.+.+.++.
T Consensus 328 ~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 328 KEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp SEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 987766554 369999999999999886
No 232
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=2.1e-11 Score=133.71 Aligned_cols=155 Identities=15% Similarity=0.139 Sum_probs=104.3
Q ss_pred eEEEEEcCCC-eEE-EEECCC--cEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeC-CCc--EEEEeCCCCce
Q 004924 481 ATYFILLPQD-LFA-FGFDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DAQ--LCVWDAVGWKK 553 (723)
Q Consensus 481 v~~l~~~p~~-~l~-sgs~dg--~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~-dg~--I~vwd~~~~~~ 553 (723)
..+..|+||| .++ +.+.+| .|++||+.+++. ..+..+.......+|+|||+.++.++. +|. |+++|+.+++.
T Consensus 250 ~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 250 NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred ccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 3467899999 654 555555 599999988765 445555555677899999998887764 444 66677766432
Q ss_pred eeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcC-C--cEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEE
Q 004924 554 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-G--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY 629 (723)
Q Consensus 554 ~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~d-g--~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~ 629 (723)
..+. ..+ ......+|+|||++|+. +.+ + .|.+||+.+++.. .+.. ........|+|||++++
T Consensus 329 ---~~lt--~~g-----~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~---~~~~~~p~~spdG~~i~ 394 (433)
T PRK04922 329 ---ERLT--FQG-----NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP---GSLDESPSFAPNGSMVL 394 (433)
T ss_pred ---EEee--cCC-----CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC---CCCCCCceECCCCCEEE
Confidence 1111 112 23447899999999987 322 2 6999999887754 3332 22345679999999888
Q ss_pred EEeCC---CcEEEEECCCCcEEEEe
Q 004924 630 VSCKS---GHVKVFDTSTLELRCQI 651 (723)
Q Consensus 630 sgs~d---g~I~iwd~~~~~~~~~~ 651 (723)
..+.+ +.|++++...+ ....+
T Consensus 395 ~~s~~~g~~~L~~~~~~g~-~~~~l 418 (433)
T PRK04922 395 YATREGGRGVLAAVSTDGR-VRQRL 418 (433)
T ss_pred EEEecCCceEEEEEECCCC-ceEEc
Confidence 76653 46888888644 34444
No 233
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.45 E-value=4.8e-12 Score=122.00 Aligned_cols=154 Identities=11% Similarity=0.133 Sum_probs=110.0
Q ss_pred EEEEEcCCCCEEEEEeC---C-------CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE--E-c
Q 004924 523 TCLAYSLSLNVLVSSGA---D-------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-H 589 (723)
Q Consensus 523 ~~l~~spdg~~l~s~s~---d-------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~--s-~ 589 (723)
..+.|+|+|..|++-.. | +...+|.++... .+...+..... ++|.+++|+|+|+.+++ | .
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~----~~~~~i~l~~~---~~I~~~~WsP~g~~favi~g~~ 81 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN----IPVESIELKKE---GPIHDVAWSPNGNEFAVIYGSM 81 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC----CccceeeccCC---CceEEEEECcCCCEEEEEEccC
Confidence 46789999988665433 1 234455553211 12222222222 57999999999998876 3 5
Q ss_pred CCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC---CcEEEEECCCCcEEEEeecccccCCCCccCcc
Q 004924 590 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLEL 666 (723)
Q Consensus 590 dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v 666 (723)
++.|.+||++ ++.+..+. ...+..+.|||+|++|++|+.+ |.|.+||..+.+.+..... ..
T Consensus 82 ~~~v~lyd~~-~~~i~~~~----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~---------~~-- 145 (194)
T PF08662_consen 82 PAKVTLYDVK-GKKIFSFG----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH---------SD-- 145 (194)
T ss_pred CcccEEEcCc-ccEeEeec----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc---------Cc--
Confidence 6799999996 66666663 5677899999999999988753 6799999998888776541 22
Q ss_pred ceEEEEEecCCCCEEEEEEC------CCcEEEEecCCCceee
Q 004924 667 YPLVIAAHPLEPNRIALGLT------NGRVHVIEPLESEVEW 702 (723)
Q Consensus 667 ~~~~v~~sp~d~~~las~s~------Dg~v~iWd~~~~~~~w 702 (723)
++.++|+| +|+++++++. |+.++||+. .|+...
T Consensus 146 -~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~ 184 (194)
T PF08662_consen 146 -ATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSF-QGRLLY 184 (194)
T ss_pred -EEEEEEcC-CCCEEEEEEeccceeccccEEEEEe-cCeEeE
Confidence 45899999 9999998874 789999998 455443
No 234
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.45 E-value=9.8e-12 Score=119.82 Aligned_cols=153 Identities=16% Similarity=0.180 Sum_probs=107.8
Q ss_pred EEEEcCCC-eEE-EEEC---------CCcEEEEeCCC-CcEEEEEcC-cCCcEEEEEEcCCCCEEEEE--eCCCcEEEEe
Q 004924 483 YFILLPQD-LFA-FGFD---------DSSILVHCPCT-KKTKAKLKG-HQNRITCLAYSLSLNVLVSS--GADAQLCVWD 547 (723)
Q Consensus 483 ~l~~~p~~-~l~-sgs~---------dg~I~iwd~~~-~~~~~~l~~-~~~~i~~l~~spdg~~l~s~--s~dg~I~vwd 547 (723)
.+.|+|+| .|+ .... -+...+|.++. +.....+.- ..++|.+++|+|+|+.+++. ..++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 67899999 443 2221 12344444422 233444432 34579999999999987554 4678999999
Q ss_pred CCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE----cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEee
Q 004924 548 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 623 (723)
Q Consensus 548 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s----~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~sp 623 (723)
++. ..+.++.. ..+..+.|+|+|++++++ ..|.|.+||.++.+.+.... ...++.++|||
T Consensus 90 ~~~------~~i~~~~~------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~WsP 153 (194)
T PF08662_consen 90 VKG------KKIFSFGT------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWSP 153 (194)
T ss_pred Ccc------cEeEeecC------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEcC
Confidence 974 33343322 467899999999999983 24689999999888877663 34578999999
Q ss_pred CCcEEEEEeC------CCcEEEEECCCCcEEEEee
Q 004924 624 DGKCIYVSCK------SGHVKVFDTSTLELRCQIN 652 (723)
Q Consensus 624 dg~~l~sgs~------dg~I~iwd~~~~~~~~~~~ 652 (723)
||+++++++. |+.++||+.. |+++....
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 9999998774 7889999985 66665543
No 235
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.44 E-value=8.4e-11 Score=120.80 Aligned_cols=322 Identities=10% Similarity=0.043 Sum_probs=211.9
Q ss_pred ccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCccc
Q 004924 330 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 409 (723)
Q Consensus 330 ~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~ 409 (723)
...+||.|.++++... ..|.+|.-.. ...+..+. ...|..+.|||.++||.+-+..+.+ +......+
T Consensus 37 ~~~~SP~G~~l~~~~~-~~V~~~~g~~---~~~l~~~~------~~~V~~~~fSP~~kYL~tw~~~pi~---~pe~e~sp 103 (561)
T COG5354 37 YVSESPLGTYLFSEHA-AGVECWGGPS---KAKLVRFR------HPDVKYLDFSPNEKYLVTWSREPII---EPEIEISP 103 (561)
T ss_pred heeecCcchheehhhc-cceEEccccc---hhheeeee------cCCceecccCcccceeeeeccCCcc---ChhhccCC
Confidence 3448999999988774 4478888765 34555553 3579999999999999987775543 11111111
Q ss_pred ccccceeeeeEEEecCCCeeeeeccCCCCCCC--eE-EEEEe--CCEEEEEeCCcEEEEEcCCCcE-EEEEeC-CCCCeE
Q 004924 410 LEEENVNMESQLYQPSSKLVMTNDIAADPKDS--IS-CFALR--GSHLFSASGGKISIFSLETFQT-LATFAN-PPPIAT 482 (723)
Q Consensus 410 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~-~v~~s--~~~l~s~sdg~I~vwd~~~~~~-~~~~~~-~~~~v~ 482 (723)
.+... .+.+||..+|.++.... +...+ .+ -+.|+ +.++|-.....+.|+++ ++.. ...+.. ....+.
T Consensus 104 ~~~~n---~~~vwd~~sg~iv~sf~--~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~ 177 (561)
T COG5354 104 FTSKN---NVFVWDIASGMIVFSFN--GISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGIL 177 (561)
T ss_pred ccccC---ceeEEeccCceeEeecc--ccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhcccccee
Confidence 11111 35779999999887554 22233 34 56777 55555555778999997 3221 111111 135678
Q ss_pred EEEEcCCC---eEEE-----EECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeC-----------CCcE
Q 004924 483 YFILLPQD---LFAF-----GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-----------DAQL 543 (723)
Q Consensus 483 ~l~~~p~~---~l~s-----gs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~-----------dg~I 543 (723)
...|+|.+ .||. ++.++.+++|.+-.+..+..-.-....-..+.|++.|+++++-.. ...+
T Consensus 178 dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnL 257 (561)
T COG5354 178 DFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNL 257 (561)
T ss_pred eEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceE
Confidence 88999975 4443 456779999999877766554333344457889999987654221 2457
Q ss_pred EEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE--E-cCCcEEEEECCCCceeEEecCCCCCCCeEEEE
Q 004924 544 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYAT 620 (723)
Q Consensus 544 ~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~--s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~ 620 (723)
+++++... .+. ...... ++|...+|.|.++.+++ | .+-.+.++|++.. ....+. ...=..+.
T Consensus 258 yl~~~~e~------~i~-V~~~~~---~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P----e~~rNT~~ 322 (561)
T COG5354 258 YLLRITER------SIP-VEKDLK---DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP----EQKRNTIF 322 (561)
T ss_pred EEEeeccc------ccc-eecccc---ccceeeeecccCCceeEEecccccceeecccccc-eEEecC----Cccccccc
Confidence 77777642 122 111222 78999999999988886 3 6779999999755 444332 34455688
Q ss_pred EeeCCcEEEEEeCC---CcEEEEECCCCcEEE-EeecccccCCCCccCccceEEEEEecCCCCEEEEEE------CCCcE
Q 004924 621 YSCDGKCIYVSCKS---GHVKVFDTSTLELRC-QINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL------TNGRV 690 (723)
Q Consensus 621 ~spdg~~l~sgs~d---g~I~iwd~~~~~~~~-~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s------~Dg~v 690 (723)
|||.+++++.++-| |.+-+||......+. .+.+ . +..-+.|+| |+.++.+.. .|..+
T Consensus 323 fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~---------~---n~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i 389 (561)
T COG5354 323 FSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG---------L---NTSYCDWSP-DGQFYDTDTTSEKLRVDNSI 389 (561)
T ss_pred ccCcccEEEEecCCccccceEEeccCCceEEEEEeec---------C---CceEeeccC-CceEEEecCCCcccccCcce
Confidence 99999999988776 789999998765544 4432 1 133678999 888877664 47899
Q ss_pred EEEecCCC
Q 004924 691 HVIEPLES 698 (723)
Q Consensus 691 ~iWd~~~~ 698 (723)
.|||+...
T Consensus 390 ~l~~v~g~ 397 (561)
T COG5354 390 KLWDVYGA 397 (561)
T ss_pred EEEEecCc
Confidence 99999654
No 236
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=2.5e-11 Score=132.78 Aligned_cols=210 Identities=17% Similarity=0.133 Sum_probs=136.4
Q ss_pred CcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECC---CcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCE
Q 004924 458 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 533 (723)
Q Consensus 458 g~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~d---g~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~ 533 (723)
..|.++|.. |...+.+..+...+.+.+|+||| .++..+.+ ..|++||+.+++... +....+.+....|+|||+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 357777763 55555566677788899999999 88776643 369999999887643 3334455678899999998
Q ss_pred EE-EEeCCCcEEEEe--CCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E-cCCcEEEE--ECCCCceeEE
Q 004924 534 LV-SSGADAQLCVWD--AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVY--EAPTLNHTSQ 606 (723)
Q Consensus 534 l~-s~s~dg~I~vwd--~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~dg~I~vw--d~~~~~~~~~ 606 (723)
++ +.+.+|...+|. +.++. +..+.. +. .......|+|||+.|+. + .++...+| ++.+++...
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~------~~~lt~-~~---~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~- 322 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG------LRRLTQ-SS---GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR- 322 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC------cEECCC-CC---CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-
Confidence 76 456777766665 44432 221222 21 34567889999998886 4 33544454 555554322
Q ss_pred ecCCCCCCCeEEEEEeeCCcEEEEEeCCC---cEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEE
Q 004924 607 LVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 683 (723)
Q Consensus 607 ~~~~~h~~~v~~l~~spdg~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las 683 (723)
+... .......+|||||++|+..+.++ .|++||+.+++... +.. ..... ...|+| |+++|+.
T Consensus 323 lt~~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~---------~~~~~--~p~~sp-dg~~l~~ 387 (427)
T PRK02889 323 VTFT--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD---------TTRDE--SPSFAP-NGRYILY 387 (427)
T ss_pred EecC--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC---------CCCcc--CceECC-CCCEEEE
Confidence 2211 23344678999999999777654 69999999887543 321 11122 679999 8888887
Q ss_pred EECCC-c--EEEEec
Q 004924 684 GLTNG-R--VHVIEP 695 (723)
Q Consensus 684 ~s~Dg-~--v~iWd~ 695 (723)
++.++ . +.+.++
T Consensus 388 ~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 388 ATQQGGRSVLAAVSS 402 (427)
T ss_pred EEecCCCEEEEEEEC
Confidence 77554 2 444445
No 237
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=1.4e-11 Score=122.65 Aligned_cols=252 Identities=13% Similarity=0.069 Sum_probs=179.9
Q ss_pred CCCceEEEEEeCCCC--EEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCC
Q 004924 373 FGGRVVRLIYSHSGD--FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGS 450 (723)
Q Consensus 373 h~~~V~~l~fspdg~--~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~ 450 (723)
....|..++|.-+++ .+..++.|..+.......... +..+|+..+-. ....+|..++..+.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~---------~s~~~~~~~~~--------l~~~~I~gl~~~dg 116 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEI---------SSSLDDAKTVS--------LGTKSIKGLKLADG 116 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCcc---------ccccccccccc--------cccccccchhhcCC
Confidence 456788888876653 455554566665555443222 11223332211 35667777777755
Q ss_pred EEEEEe-CCcEEEEEcCCCc----EEEEEeCCCCCeEEEEEcCCC--eEEEEECC--CcEEEEeCCCCcEEEEEcC----
Q 004924 451 HLFSAS-GGKISIFSLETFQ----TLATFANPPPIATYFILLPQD--LFAFGFDD--SSILVHCPCTKKTKAKLKG---- 517 (723)
Q Consensus 451 ~l~s~s-dg~I~vwd~~~~~----~~~~~~~~~~~v~~l~~~p~~--~l~sgs~d--g~I~iwd~~~~~~~~~l~~---- 517 (723)
.|++|- +|.+.+|..+.+. .+..+..+ ..+..+.-++.. .+++|+.. ..+.+||+.+.+.+..-+.
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD 195 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPND 195 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCc
Confidence 666666 9999999988543 22233332 445566666666 67779988 7899999998755533221
Q ss_pred -----cCCcEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-c
Q 004924 518 -----HQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H 589 (723)
Q Consensus 518 -----~~~~i~~l~~spd--g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~ 589 (723)
-.-.++++.|-+. ...+++++.-+.+++||.+.+ ..++.++.-.. .+++++...|+|++++++ .
T Consensus 196 ~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q----RRPV~~fd~~E----~~is~~~l~p~gn~Iy~gn~ 267 (412)
T KOG3881|consen 196 RLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ----RRPVAQFDFLE----NPISSTGLTPSGNFIYTGNT 267 (412)
T ss_pred cccceeeeeeccceecCCCCCceEEEEecceeEEEecCccc----CcceeEecccc----CcceeeeecCCCcEEEEecc
Confidence 1234668889887 789999999999999999975 35555444443 689999999999999997 7
Q ss_pred CCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEe
Q 004924 590 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 651 (723)
Q Consensus 590 dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~ 651 (723)
.+.+..||++.++....... +..+.|.++..+|.++++++++-|..|+|+|+.+.+++...
T Consensus 268 ~g~l~~FD~r~~kl~g~~~k-g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 268 KGQLAKFDLRGGKLLGCGLK-GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred cchhheecccCceeeccccC-CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh
Confidence 89999999999988777332 35889999999999999999999999999999997665443
No 238
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.7e-12 Score=133.52 Aligned_cols=215 Identities=15% Similarity=0.159 Sum_probs=158.0
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEe-CCCCCeEEEEEcCCC---eEEEEECCCcEEEEeCCCC
Q 004924 437 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTK 509 (723)
Q Consensus 437 ~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~-~~~~~v~~l~~~p~~---~l~sgs~dg~I~iwd~~~~ 509 (723)
||++.|+|+.|+ |.+|++|+ |-.+.|||.-..+.+..+. +|...|-++.|-|.. .+++|..|..|+++|+...
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~ 127 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSS 127 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccc
Confidence 899999999999 99999999 7899999999888888876 999999999999865 8899999999999998841
Q ss_pred ----------cEEEEEcCcCCcEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCce-eeceeeeeeecCCCCCCCCeEEEE
Q 004924 510 ----------KTKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKK-LCSKFLHSFQTGLVPETTIVNHIQ 577 (723)
Q Consensus 510 ----------~~~~~l~~~~~~i~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~-~~~~~l~~~~~~~~~~~~~v~~l~ 577 (723)
+....+..|...|..++-.|++ ..+.+++.||+|+-+|++.... ..............+.--...++.
T Consensus 128 ~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~lt 207 (758)
T KOG1310|consen 128 KEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLT 207 (758)
T ss_pred cccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeee
Confidence 3445566789999999999988 7899999999999999986210 000000000000000013567899
Q ss_pred EccCC-CEEEEE-cCCcEEEEECCC--------Cc----------eeEEecCCCCC--------C---CeEEEEEeeCCc
Q 004924 578 FHPDQ-IHLLSI-HEGQIDVYEAPT--------LN----------HTSQLVPDKMD--------L---PITYATYSCDGK 626 (723)
Q Consensus 578 ~spdg-~~l~~s-~dg~I~vwd~~~--------~~----------~~~~~~~~~h~--------~---~v~~l~~spdg~ 626 (723)
++|.. .+|++| +|--.++||.+. +. ++..+.+ +|. . .++-++|+|+|.
T Consensus 208 isp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p-~hlkn~~gn~~~~~~~~t~vtfnpNGt 286 (758)
T KOG1310|consen 208 ISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSP-GHLKNSQGNLDRYITCCTYVTFNPNGT 286 (758)
T ss_pred ecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecC-ccccCcccccccceeeeEEEEECCCCc
Confidence 99986 455664 888999999431 11 2333332 221 1 256678999998
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEee
Q 004924 627 CIYVSCKSGHVKVFDTSTLELRCQIN 652 (723)
Q Consensus 627 ~l~sgs~dg~I~iwd~~~~~~~~~~~ 652 (723)
-|++.-....|+++|+..++....+.
T Consensus 287 ElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 287 ELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred EEEEeeCCeEEEEEeecCCCCceeec
Confidence 88777777789999999887665543
No 239
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.41 E-value=7.2e-12 Score=129.02 Aligned_cols=240 Identities=15% Similarity=0.218 Sum_probs=161.6
Q ss_pred eEEEEEe--CCEEEEEeCCcEEEEEcCCCcEE----E--EEeCCCCCeEEEEE-----cCCC-eEEEEECCCcEEEEeCC
Q 004924 442 ISCFALR--GSHLFSASGGKISIFSLETFQTL----A--TFANPPPIATYFIL-----LPQD-LFAFGFDDSSILVHCPC 507 (723)
Q Consensus 442 V~~v~~s--~~~l~s~sdg~I~vwd~~~~~~~----~--~~~~~~~~v~~l~~-----~p~~-~l~sgs~dg~I~iwd~~ 507 (723)
+....++ |++|+..-...+.+|+...+... . .+.+. ..+|-+| .|.+ -++.|-.-|.|.+.|..
T Consensus 126 ~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt--~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGT--SPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred eeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCC--CCceecccccccCCCCcceEEeeccCceEEecch
Confidence 3344444 56665555667778877643221 1 12222 2223334 3566 78889999999999876
Q ss_pred CCcEEEEEcC----cCCcEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCcee---e--------c------------eee
Q 004924 508 TKKTKAKLKG----HQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKL---C--------S------------KFL 559 (723)
Q Consensus 508 ~~~~~~~l~~----~~~~i~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~---~--------~------------~~l 559 (723)
..+..+.+.. .+..|+|+.|-|.+ ..++.+-.+|.+++||..--... + . .++
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 5332222221 34789999999854 55677778999999976321000 0 0 011
Q ss_pred eeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEE
Q 004924 560 HSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK 638 (723)
Q Consensus 560 ~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~ 638 (723)
..+..+ .+.|...+|+|||++||+ +.||.++|||..+.+++..++. .-+...|++|||||+||++|++|.-|.
T Consensus 284 ~~w~~~----~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS--YFGGLLCvcWSPDGKyIvtGGEDDLVt 357 (636)
T KOG2394|consen 284 ARWHIG----EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS--YFGGLLCVCWSPDGKYIVTGGEDDLVT 357 (636)
T ss_pred ceeEec----cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh--hccceEEEEEcCCccEEEecCCcceEE
Confidence 111111 267889999999999998 8999999999988777655543 267789999999999999999999999
Q ss_pred EEECCCCcEEEEeecccccCCCCccCccceEEEEEecC----------------------------------CC------
Q 004924 639 VFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL----------------------------------EP------ 678 (723)
Q Consensus 639 iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~----------------------------------d~------ 678 (723)
||.+..++.+.+=. ++.-||..|+|.|- ++
T Consensus 358 VwSf~erRVVARGq----------GHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~ 427 (636)
T KOG2394|consen 358 VWSFEERRVVARGQ----------GHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSF 427 (636)
T ss_pred EEEeccceEEEecc----------ccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCccccc
Confidence 99999998887643 23344558888620 11
Q ss_pred -------CEEEEEECCCcEEEEecCCCc
Q 004924 679 -------NRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 679 -------~~las~s~Dg~v~iWd~~~~~ 699 (723)
..+.++|.|-.+.+||+....
T Consensus 428 ~~~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 428 NRINSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred ccccceEEEeecccccceEEEEecchhh
Confidence 147788899999999997643
No 240
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=1.7e-10 Score=126.13 Aligned_cols=212 Identities=14% Similarity=0.079 Sum_probs=137.7
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-C---CcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEE-EEECCCcEEEE--eC
Q 004924 437 DPKDSISCFALR--GSHLFSAS-G---GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVH--CP 506 (723)
Q Consensus 437 ~h~~~V~~v~~s--~~~l~s~s-d---g~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~-sgs~dg~I~iw--d~ 506 (723)
.+...+.+.+|+ |+.|+..+ + ..|.+||+.+++... +....+.+.+.+|+||| .++ +.+.+|...+| |+
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 271 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA 271 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence 366788899999 78888776 2 359999999887643 33334456688999999 665 56677765555 55
Q ss_pred CCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeC-CCcEEEEeC--CCCceeeceeeeeeecCCCCCCCCeEEEEEccCCC
Q 004924 507 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDA--VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 583 (723)
Q Consensus 507 ~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~-dg~I~vwd~--~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~ 583 (723)
.++. ...+..+........|+|||+.++..+. +|...+|.+ .++.. ..+. ..+ .......|+|||+
T Consensus 272 ~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~---~~lt--~~g-----~~~~~~~~SpDG~ 340 (427)
T PRK02889 272 DGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA---QRVT--FTG-----SYNTSPRISPDGK 340 (427)
T ss_pred CCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce---EEEe--cCC-----CCcCceEECCCCC
Confidence 5444 4555555555677899999998886664 456666654 44321 1111 112 2344678999999
Q ss_pred EEEE-EcCC---cEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCC---cEEEEECCCCcEEEEeecccc
Q 004924 584 HLLS-IHEG---QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAY 656 (723)
Q Consensus 584 ~l~~-s~dg---~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~~~ 656 (723)
+|+. +.++ .|++||+.+++.. .+.. ........|+|||++|+.++.++ .+++.+. +|.....+..+
T Consensus 341 ~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~---~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~-- 413 (427)
T PRK02889 341 LLAYISRVGGAFKLYVQDLATGQVT-ALTD---TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQ-- 413 (427)
T ss_pred EEEEEEccCCcEEEEEEECCCCCeE-EccC---CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecC--
Confidence 9986 4333 6999999887754 3322 22346789999999988777553 3666666 35545544321
Q ss_pred cCCCCccCccceEEEEEec
Q 004924 657 AQPGTISLELYPLVIAAHP 675 (723)
Q Consensus 657 ~~~g~~~~~v~~~~v~~sp 675 (723)
.+.+. ..+|+|
T Consensus 414 ------~g~~~--~p~wsp 424 (427)
T PRK02889 414 ------GGDVR--EPSWGP 424 (427)
T ss_pred ------CCCCC--CCccCC
Confidence 22334 678887
No 241
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=2.1e-10 Score=118.73 Aligned_cols=323 Identities=11% Similarity=0.053 Sum_probs=203.4
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccc
Q 004924 331 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 410 (723)
Q Consensus 331 ~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~ 410 (723)
..+||.|.||++-...| |.+|--.+ -..++++. | -.|..+.|||+.+||+|-|..-.+.=|+-..
T Consensus 216 v~wSP~GTYL~t~Hk~G-I~lWGG~~---f~r~~RF~-----H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e----- 280 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQG-IALWGGES---FDRIQRFY-----H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNE----- 280 (698)
T ss_pred EEecCCceEEEEEeccc-eeeecCcc---HHHHHhcc-----C-CCceeeecCCccceEEEecCCccccCcccCC-----
Confidence 34899999999987554 67886443 34455442 4 3689999999999999988643333332111
Q ss_pred cccceeeeeEEEecCCCeeeeeccCCCCCCCeE-EEEEe--CCEEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEc
Q 004924 411 EEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILL 487 (723)
Q Consensus 411 g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~s--~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~ 487 (723)
|+ .+.+||..+|.++..+..-.....++ -+.|| ++++|.-....|.||+..+...+..-.-.-..|....|+
T Consensus 281 ~~-----~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~Fsws 355 (698)
T KOG2314|consen 281 GQ-----QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWS 355 (698)
T ss_pred Cc-----eEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccC
Confidence 11 13455555665554332111222233 35788 778887778889999987644432222234568889999
Q ss_pred CCC-eEEEEE--CC---CcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCC
Q 004924 488 PQD-LFAFGF--DD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA----------DAQLCVWDAVGW 551 (723)
Q Consensus 488 p~~-~l~sgs--~d---g~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~----------dg~I~vwd~~~~ 551 (723)
|.+ .||-=. .+ ..+.+..+-+++.+++-+-+.-.=..+.|..+|.+|+.--. -..+.|+.++..
T Consensus 356 P~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireK 435 (698)
T KOG2314|consen 356 PTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREK 435 (698)
T ss_pred CCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeecc
Confidence 999 666432 22 26777888888887776666555556778888988875321 113445555441
Q ss_pred ceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE--E--cCCcEEEEECCC-C---ceeEEecCCCCCCCeEEEEEee
Q 004924 552 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I--HEGQIDVYEAPT-L---NHTSQLVPDKMDLPITYATYSC 623 (723)
Q Consensus 552 ~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~--s--~dg~I~vwd~~~-~---~~~~~~~~~~h~~~v~~l~~sp 623 (723)
..++..+... ..|...+|-|.|..+++ + ...++.+|.+++ . +.+..+. ....+.+.|+|
T Consensus 436 ----dIpve~velk-----e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d----k~~~N~vfwsP 502 (698)
T KOG2314|consen 436 ----DIPVEVVELK-----ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD----KKFANTVFWSP 502 (698)
T ss_pred ----CCCceeeecc-----hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc----ccccceEEEcC
Confidence 1222222221 67889999999988886 3 335788898873 2 2223331 46678899999
Q ss_pred CCcEEEEE---eCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEEC------CCcEEEEe
Q 004924 624 DGKCIYVS---CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT------NGRVHVIE 694 (723)
Q Consensus 624 dg~~l~sg---s~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~------Dg~v~iWd 694 (723)
.|++++.+ |..|.+.++|.........-.+ . |.. .+.+.|.| .|.|+++++. |..-+||+
T Consensus 503 kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~------e-h~~---at~veWDP-tGRYvvT~ss~wrhk~d~GYri~t 571 (698)
T KOG2314|consen 503 KGRFVVVAALVSRRGDLEFYDTDYADLKDTASP------E-HFA---ATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFT 571 (698)
T ss_pred CCcEEEEEEecccccceEEEecchhhhhhccCc------c-ccc---cccceECC-CCCEEEEeeehhhhccccceEEEE
Confidence 99998865 4568999999885332221111 0 111 34789999 7999999875 55667888
Q ss_pred cCC
Q 004924 695 PLE 697 (723)
Q Consensus 695 ~~~ 697 (723)
...
T Consensus 572 fqG 574 (698)
T KOG2314|consen 572 FQG 574 (698)
T ss_pred eec
Confidence 754
No 242
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.36 E-value=5e-09 Score=111.27 Aligned_cols=243 Identities=15% Similarity=0.164 Sum_probs=157.3
Q ss_pred CCeEEEEEe--CCEEEEEe-C----CcEEEEEcCCC--c--EEEEEeCCCCCeEEEEEcCCC-eEEEEE-CCCcEEEEeC
Q 004924 440 DSISCFALR--GSHLFSAS-G----GKISIFSLETF--Q--TLATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHCP 506 (723)
Q Consensus 440 ~~V~~v~~s--~~~l~s~s-d----g~I~vwd~~~~--~--~~~~~~~~~~~v~~l~~~p~~-~l~sgs-~dg~I~iwd~ 506 (723)
.....++++ +++|+++. . |.|..|++... + .+............++++|++ .++++. .+|.|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 344567777 77888876 3 58888888653 3 233333345566789999999 776665 5889999999
Q ss_pred CC-CcEEEE---Ec----------CcCCcEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCc--eeeceeeeeeecCCCCC
Q 004924 507 CT-KKTKAK---LK----------GHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWK--KLCSKFLHSFQTGLVPE 569 (723)
Q Consensus 507 ~~-~~~~~~---l~----------~~~~~i~~l~~spdg~~l~s~s~-dg~I~vwd~~~~~--~~~~~~l~~~~~~~~~~ 569 (723)
.. |..... +. .......++.++|+|+++++... ...|.+|++.... ......+. ++.+
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~-~~~G---- 191 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIK-VPPG---- 191 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEE-CSTT----
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccc-cccC----
Confidence 87 443322 21 12345789999999998887653 4579999997653 22211222 3333
Q ss_pred CCCeEEEEEccCCCEEEE-E-cCCcEEEEECC--CCce--eEEecCC--C--CCCCeEEEEEeeCCcEEEEEeC-CCcEE
Q 004924 570 TTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAP--TLNH--TSQLVPD--K--MDLPITYATYSCDGKCIYVSCK-SGHVK 638 (723)
Q Consensus 570 ~~~v~~l~~spdg~~l~~-s-~dg~I~vwd~~--~~~~--~~~~~~~--~--h~~~v~~l~~spdg~~l~sgs~-dg~I~ 638 (723)
...+.++|+|+++++++ . .++.|.++++. ++.. +..+... . .......++++|||++|+++.. ++.|.
T Consensus 192 -~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~ 270 (345)
T PF10282_consen 192 -SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSIS 270 (345)
T ss_dssp -SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEE
T ss_pred -CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEE
Confidence 67899999999999987 4 67889999987 4432 2222211 1 1236888999999999987664 57899
Q ss_pred EEECC--CCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEE-CCCcEEEEecCC
Q 004924 639 VFDTS--TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVHVIEPLE 697 (723)
Q Consensus 639 iwd~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s-~Dg~v~iWd~~~ 697 (723)
+|++. +|++...-... .....+..++++| ++++|+++. .++.|.+|++..
T Consensus 271 vf~~d~~~g~l~~~~~~~--------~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 271 VFDLDPATGTLTLVQTVP--------TGGKFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEECTTTTTEEEEEEEE--------ESSSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEET
T ss_pred EEEEecCCCceEEEEEEe--------CCCCCccEEEEeC-CCCEEEEEecCCCeEEEEEEeC
Confidence 99983 45443221111 1122356899999 889888777 567999998753
No 243
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.35 E-value=4.1e-10 Score=123.56 Aligned_cols=219 Identities=16% Similarity=0.078 Sum_probs=144.4
Q ss_pred CcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECC---CcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCE
Q 004924 458 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 533 (723)
Q Consensus 458 g~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~d---g~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~ 533 (723)
..|.++|.. +...+.+..+...+.+.+|+||| .++.++.+ ..|++||+.+++... +..+.+.+.++.|+|||+.
T Consensus 170 ~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 357788875 34445555666678899999999 77776643 479999999886543 3335556777899999987
Q ss_pred EEEE-eCCC--cEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E-cCC--cEEEEECCCCceeEE
Q 004924 534 LVSS-GADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEG--QIDVYEAPTLNHTSQ 606 (723)
Q Consensus 534 l~s~-s~dg--~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~dg--~I~vwd~~~~~~~~~ 606 (723)
|+.. +.++ .|++||+.++.. ..+.. +. .......|+|||+.|+. + .++ .|+++|+.+++.. .
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~------~~l~~-~~---~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~ 316 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQL------TRLTN-GP---GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-R 316 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCE------EECCC-CC---CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-E
Confidence 7644 4444 588899887532 11222 11 23456789999998876 3 223 6888898877643 3
Q ss_pred ecCCCCCCCeEEEEEeeCCcEEEEEeCCC---cEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEE
Q 004924 607 LVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 683 (723)
Q Consensus 607 ~~~~~h~~~v~~l~~spdg~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las 683 (723)
+.. +...+..+.|+|+|++++.++.++ .|++||+.++.... +.. ..... ...|+| ++++|+.
T Consensus 317 l~~--~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~---------~~~~~--~p~~sp-dg~~l~~ 381 (417)
T TIGR02800 317 LTF--RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTD---------TGLDE--SPSFAP-NGRMILY 381 (417)
T ss_pred eec--CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccC---------CCCCC--CceECC-CCCEEEE
Confidence 322 245667889999999999888776 79999998865432 221 11112 568999 8888877
Q ss_pred EECCC---cEEEEecCCCceeeecC
Q 004924 684 GLTNG---RVHVIEPLESEVEWGKL 705 (723)
Q Consensus 684 ~s~Dg---~v~iWd~~~~~~~w~~~ 705 (723)
++.++ .+++.+. ++......+
T Consensus 382 ~~~~~~~~~l~~~~~-~g~~~~~~~ 405 (417)
T TIGR02800 382 ATTRGGRGVLGLVST-DGRFRARLP 405 (417)
T ss_pred EEeCCCcEEEEEEEC-CCceeeECC
Confidence 77654 3445554 344344443
No 244
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=1.8e-10 Score=114.76 Aligned_cols=218 Identities=15% Similarity=0.114 Sum_probs=157.4
Q ss_pred CCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---CC
Q 004924 374 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GS 450 (723)
Q Consensus 374 ~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~ 450 (723)
+..|..++.. || .|++|-.+|.+.+|....+.....+. .-|. ....+..+.-+ ..
T Consensus 105 ~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l------~~la--------------~g~g~~~~r~~~~~p~ 162 (412)
T KOG3881|consen 105 TKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKL------IKLA--------------TGPGLYDVRQTDTDPY 162 (412)
T ss_pred cccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccc------eeee--------------cCCceeeeccCCCCCc
Confidence 4455555543 33 58889999999999987443210000 0011 12334444444 34
Q ss_pred EEEEEe-C--CcEEEEEcCCCcEEEEEeCC---------CCCeEEEEEcCC--C-eEEEEECCCcEEEEeCCCC-cEEEE
Q 004924 451 HLFSAS-G--GKISIFSLETFQTLATFANP---------PPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTK-KTKAK 514 (723)
Q Consensus 451 ~l~s~s-d--g~I~vwd~~~~~~~~~~~~~---------~~~v~~l~~~p~--~-~l~sgs~dg~I~iwd~~~~-~~~~~ 514 (723)
.+++|+ . ..+.+||++..+.+..-... .-.++++.|-+. . .|++++.-+.+++||.+.+ +++..
T Consensus 163 Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~ 242 (412)
T KOG3881|consen 163 IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ 242 (412)
T ss_pred eEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE
Confidence 566677 6 78999999887555443321 124578888887 5 9999999999999998864 67788
Q ss_pred EcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcE
Q 004924 515 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQI 593 (723)
Q Consensus 515 l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I 593 (723)
+.-...+++++...|+|+.+++|..-|.+..||++++.. +.....+.. +.|+++..+|.++++++ |-|..+
T Consensus 243 fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl-----~g~~~kg~t---Gsirsih~hp~~~~las~GLDRyv 314 (412)
T KOG3881|consen 243 FDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL-----LGCGLKGIT---GSIRSIHCHPTHPVLASCGLDRYV 314 (412)
T ss_pred eccccCcceeeeecCCCcEEEEecccchhheecccCcee-----eccccCCcc---CCcceEEEcCCCceEEeeccceeE
Confidence 887889999999999999999999999999999998532 232234444 79999999999999998 699999
Q ss_pred EEEECCCCceeEEecCCCCCCCeEEEEEeeC
Q 004924 594 DVYEAPTLNHTSQLVPDKMDLPITYATYSCD 624 (723)
Q Consensus 594 ~vwd~~~~~~~~~~~~~~h~~~v~~l~~spd 624 (723)
||+|+.+.+++..... ...++++.+.++
T Consensus 315 RIhD~ktrkll~kvYv---Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 315 RIHDIKTRKLLHKVYV---KSRLTFILLRDD 342 (412)
T ss_pred EEeecccchhhhhhhh---hccccEEEecCC
Confidence 9999999777665543 556677777554
No 245
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.1e-09 Score=120.46 Aligned_cols=212 Identities=14% Similarity=0.047 Sum_probs=138.9
Q ss_pred cEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECC---CcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEE
Q 004924 459 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 534 (723)
Q Consensus 459 ~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~d---g~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l 534 (723)
.|.++|.+.+ ..+.+..+...+....|+||| .|+..+.+ ..|++||+.+++... +....+.+....|+|||+.+
T Consensus 180 ~l~~~d~~g~-~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGA-RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCC-CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 4777777644 345555666778899999999 77766543 369999999886543 33334455678999999988
Q ss_pred EE-EeCCC--cEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E-cC--CcEEEEECCCCceeEEe
Q 004924 535 VS-SGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HE--GQIDVYEAPTLNHTSQL 607 (723)
Q Consensus 535 ~s-~s~dg--~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~d--g~I~vwd~~~~~~~~~~ 607 (723)
+. .+.+| .|++||+.++.. ..+.. +. .......|+|||+.++. + .+ ..|+++|+.+++... +
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~------~~lt~-~~---~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-l 326 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQL------SRVTN-HP---AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-V 326 (430)
T ss_pred EEEEccCCCceEEEEECCCCCe------EEccc-CC---CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-e
Confidence 74 44455 588889988542 11222 11 34556789999998876 3 23 368888988777533 2
Q ss_pred cCCCCCCCeEEEEEeeCCcEEEEEeCC-C--cEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEE
Q 004924 608 VPDKMDLPITYATYSCDGKCIYVSCKS-G--HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 684 (723)
Q Consensus 608 ~~~~h~~~v~~l~~spdg~~l~sgs~d-g--~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 684 (723)
... ........|+|||++|+..+.+ + .|++||+.+++.. .+.. + .. .. ...|+| +|++++..
T Consensus 327 t~~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~------~--~~-~~--~p~~sp-dg~~i~~~ 391 (430)
T PRK00178 327 TFV--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD------T--SL-DE--SPSVAP-NGTMLIYA 391 (430)
T ss_pred ecC--CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC------C--CC-CC--CceECC-CCCEEEEE
Confidence 221 2234467899999999876653 3 5889999988643 3321 1 11 11 468999 88888776
Q ss_pred ECC---CcEEEEecCCC
Q 004924 685 LTN---GRVHVIEPLES 698 (723)
Q Consensus 685 s~D---g~v~iWd~~~~ 698 (723)
+.+ ..+.++++..+
T Consensus 392 ~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 392 TRQQGRGVLMLVSINGR 408 (430)
T ss_pred EecCCceEEEEEECCCC
Confidence 644 34667777443
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=2.8e-09 Score=117.21 Aligned_cols=150 Identities=11% Similarity=0.063 Sum_probs=98.6
Q ss_pred eEEEEEcCCC-eEE-EEECCC--cEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCce
Q 004924 481 ATYFILLPQD-LFA-FGFDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DA--QLCVWDAVGWKK 553 (723)
Q Consensus 481 v~~l~~~p~~-~l~-sgs~dg--~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~-dg--~I~vwd~~~~~~ 553 (723)
+....|+||| .++ +.+.+| .|++||+.+++.. .+..+........|+|||+.++..+. +| .|+++|+.+++.
T Consensus 245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 3467899999 665 444455 6888899887654 45555555667899999998876664 33 577778877542
Q ss_pred eeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E-cCC--cEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEE
Q 004924 554 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY 629 (723)
Q Consensus 554 ~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~dg--~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~ 629 (723)
. .+. ..+ .......|+|||++++. + .++ .|.+||+.+++.. .+.. ........|+|||++++
T Consensus 324 ~---~lt--~~~-----~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~---~~~~~~p~~spdg~~i~ 389 (430)
T PRK00178 324 E---RVT--FVG-----NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD---TSLDESPSVAPNGTMLI 389 (430)
T ss_pred E---Eee--cCC-----CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC---CCCCCCceECCCCCEEE
Confidence 1 111 111 22345789999999987 3 233 5889999887653 3322 11223568999999988
Q ss_pred EEeCC---CcEEEEECCCC
Q 004924 630 VSCKS---GHVKVFDTSTL 645 (723)
Q Consensus 630 sgs~d---g~I~iwd~~~~ 645 (723)
..+.+ +.|++++...+
T Consensus 390 ~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 390 YATRQQGRGVLMLVSINGR 408 (430)
T ss_pred EEEecCCceEEEEEECCCC
Confidence 76654 35777777543
No 247
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.26 E-value=1.3e-10 Score=113.81 Aligned_cols=258 Identities=15% Similarity=0.206 Sum_probs=171.6
Q ss_pred CCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCc-----EEEEEeCCC------------CCeEEEEEcCCC---eEEE
Q 004924 438 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ-----TLATFANPP------------PIATYFILLPQD---LFAF 494 (723)
Q Consensus 438 h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~-----~~~~~~~~~------------~~v~~l~~~p~~---~l~s 494 (723)
...-|.++.|. |++||+|. +|.|.++.-.... ....++.|. ..|..+.|.+++ .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 34568899999 99999999 9999998653321 223343443 347888999887 7888
Q ss_pred EECCCcEEEEeCCCCc-----------------------------------EEEEE-cCcCCcEEEEEEcCCCCEEEEEe
Q 004924 495 GFDDSSILVHCPCTKK-----------------------------------TKAKL-KGHQNRITCLAYSLSLNVLVSSG 538 (723)
Q Consensus 495 gs~dg~I~iwd~~~~~-----------------------------------~~~~l-~~~~~~i~~l~~spdg~~l~s~s 538 (723)
.+.|.+|++|.+.... +.+.+ .+|.--|+++.++.|+..++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 8899999999875321 01111 34777899999999998888764
Q ss_pred CCCcEEEEeCCCCceeeceeeeeeecCCC-CCCCCeEEEEEccCCCE-EE-EEcCCcEEEEECCCCceeE----EecCC-
Q 004924 539 ADAQLCVWDAVGWKKLCSKFLHSFQTGLV-PETTIVNHIQFHPDQIH-LL-SIHEGQIDVYEAPTLNHTS----QLVPD- 610 (723)
Q Consensus 539 ~dg~I~vwd~~~~~~~~~~~l~~~~~~~~-~~~~~v~~l~~spdg~~-l~-~s~dg~I~vwd~~~~~~~~----~~~~~- 610 (723)
|=.|.+|++.--.. ...+-.+....- .-+.-|++..|+|..-. ++ +++.|+|++.|++...+.. .+..+
T Consensus 184 -dLRINLWnlei~d~--sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQ--SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred -ceeeeeccccccCC--ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 77899998864211 111111111100 00145788999997533 33 4689999999998432211 11100
Q ss_pred -C--------CCCCeEEEEEeeCCcEEEEEeCCCcEEEEEC-CCCcEEEEeecccccCCC----CccCccc-eEEEEEec
Q 004924 611 -K--------MDLPITYATYSCDGKCIYVSCKSGHVKVFDT-STLELRCQINLTAYAQPG----TISLELY-PLVIAAHP 675 (723)
Q Consensus 611 -~--------h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~-~~~~~~~~~~~~~~~~~g----~~~~~v~-~~~v~~sp 675 (723)
+ --..|..+.|+++|+|+++-.. -+|++||+ ...+++.++..|.+.... .+...|+ -..++|+.
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 0 0346788999999999988643 78999999 456677777765544211 0122222 24789998
Q ss_pred CCCCEEEEEECCCcEEEEecCCCce
Q 004924 676 LEPNRIALGLTNGRVHVIEPLESEV 700 (723)
Q Consensus 676 ~d~~~las~s~Dg~v~iWd~~~~~~ 700 (723)
++.+++|||....+++++...|..
T Consensus 340 -~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 340 -NDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred -CcceEecccccceEEEecCCCCcc
Confidence 788999999999999999776643
No 248
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=8.2e-10 Score=117.27 Aligned_cols=296 Identities=11% Similarity=0.106 Sum_probs=188.4
Q ss_pred CCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCE
Q 004924 374 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 451 (723)
Q Consensus 374 ~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~ 451 (723)
.....|++|+....|+|.||.||.++|-.+.+... ++....- -.+.+-.+-++ .+||+..|.-+.|+ .+.
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~-d~~~~gl-----aa~snLsmNQt--LeGH~~sV~vvTWNe~~QK 85 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTT-DLNKSGL-----AAASNLSMNQT--LEGHNASVMVVTWNENNQK 85 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCC-ccccccc-----ccccccchhhh--hccCcceEEEEEecccccc
Confidence 56788999999999999999999999998876433 1111110 00001111111 22899999999999 556
Q ss_pred EEEEe-CCcEEEEEcCCCcEEEEEe--CCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEE-EEEcCcCCcEEEEE
Q 004924 452 LFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK-AKLKGHQNRITCLA 526 (723)
Q Consensus 452 l~s~s-dg~I~vwd~~~~~~~~~~~--~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~-~~l~~~~~~i~~l~ 526 (723)
|-+.. +|.|.||-+-.|.....+. .....|.+++|+.+| .++....||.|.+=.++..+.- +.+++ .....+.
T Consensus 86 LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ 163 (1189)
T KOG2041|consen 86 LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVL 163 (1189)
T ss_pred ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--hecccee
Confidence 66666 8999999987776544432 334568899999999 9999999999988776643221 22333 2234688
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCce--eeceeeeeeecCCCCCCCCeEEEEEc--------cCCCEEEEE-cCCcEEE
Q 004924 527 YSLSLNVLVSSGADAQLCVWDAVGWKK--LCSKFLHSFQTGLVPETTIVNHIQFH--------PDQIHLLSI-HEGQIDV 595 (723)
Q Consensus 527 ~spdg~~l~s~s~dg~I~vwd~~~~~~--~~~~~l~~~~~~~~~~~~~v~~l~~s--------pdg~~l~~s-~dg~I~v 595 (723)
|++|.+.++.+-..|.+.+||....-. +...+.-+.....+.....|..+.|. |+...++++ .+|.+.+
T Consensus 164 ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 164 WSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred ecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 999999988888899999999875311 11111111111111001335566663 567788887 6778877
Q ss_pred EECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC---------CcEEEEECCCCcEEEEeecccccCCCCccCcc
Q 004924 596 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---------GHVKVFDTSTLELRCQINLTAYAQPGTISLEL 666 (723)
Q Consensus 596 wd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d---------g~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v 666 (723)
..-.+......+.. .-.+..+.|+++|.+|++++.| +.|.+|. .-|+.+.++..+ +..
T Consensus 244 MR~eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvp--------g~~- 310 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVP--------GSC- 310 (1189)
T ss_pred hhhcCCCCCeEEec---ccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecC--------Cce-
Confidence 76544333233322 4678899999999999998864 2444443 345556665532 223
Q ss_pred ceEEEEEecCCCCEEEEEECCCcEEEEec
Q 004924 667 YPLVIAAHPLEPNRIALGLTNGRVHVIEP 695 (723)
Q Consensus 667 ~~~~v~~sp~d~~~las~s~Dg~v~iWd~ 695 (723)
+++++|-. .|-.+|.+ .|+.|++=++
T Consensus 311 -It~lsWEg-~gLriA~A-vdsfiyfanI 336 (1189)
T KOG2041|consen 311 -ITGLSWEG-TGLRIAIA-VDSFIYFANI 336 (1189)
T ss_pred -eeeeEEcC-CceEEEEE-ecceEEEEee
Confidence 44888876 45555544 4566665554
No 249
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.23 E-value=9.3e-10 Score=107.97 Aligned_cols=248 Identities=13% Similarity=0.178 Sum_probs=160.6
Q ss_pred eeeccCCCC-CCceeeeCCCcccccccCCCCCEEEEEeCCCeEEEEeecccCCCCce-eEEecCCCCCCCceEEEEEeCC
Q 004924 308 LDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHS 385 (723)
Q Consensus 308 ~~~~~~h~~-v~s~~~~~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~-~~~~l~~~~h~~~V~~l~fspd 385 (723)
++.+.||.+ ++.+. ..|...-+.+++.|.+++||--.+ .++. ..+. +....++.++++.++
T Consensus 17 l~~~eG~~d~vn~~~-----------l~~~e~gv~~~s~drtvrv~lkrd---s~q~wpsI~---~~mP~~~~~~~y~~e 79 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAI-----------LIPKEEGVISVSEDRTVRVWLKRD---SGQYWPSIY---HYMPSPCSAMEYVSE 79 (404)
T ss_pred hhhhcCchhhhhhhe-----------eccCCCCeEEccccceeeeEEecc---ccccCchhh---hhCCCCceEeeeecc
Confidence 345566666 44333 334455588899999999996543 1221 1111 113578999999999
Q ss_pred CCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEE
Q 004924 386 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISI 462 (723)
Q Consensus 386 g~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~v 462 (723)
...|+.|-.+|++.-+.+... .+.-...+... .|...|..+-|+ ..++++++ |..+.-
T Consensus 80 ~~~L~vg~~ngtvtefs~sed-----------------fnkm~~~r~~~--~h~~~v~~~if~~~~e~V~s~~~dk~~~~ 140 (404)
T KOG1409|consen 80 SRRLYVGQDNGTVTEFALSED-----------------FNKMTFLKDYL--AHQARVSAIVFSLTHEWVLSTGKDKQFAW 140 (404)
T ss_pred ceEEEEEEecceEEEEEhhhh-----------------hhhcchhhhhh--hhhcceeeEEecCCceeEEEeccccceEE
Confidence 999999999999987765421 11111112122 699999999999 77888888 766654
Q ss_pred EEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeC--CCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCC
Q 004924 463 FSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCP--CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD 540 (723)
Q Consensus 463 wd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~--~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~d 540 (723)
--.+.+..+..+.-... .+++.+.-. ....|...|.|.+..+ ..-.++..+.+|.+.+.++.|.|....+.+|..|
T Consensus 141 hc~e~~~~lg~Y~~~~~-~t~~~~d~~-~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d 218 (404)
T KOG1409|consen 141 HCTESGNRLGGYNFETP-ASALQFDAL-YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASD 218 (404)
T ss_pred EeeccCCcccceEeecc-CCCCceeeE-EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEecccc
Confidence 44454444332210000 000000000 3345555565555443 3446778899999999999999999999999999
Q ss_pred CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCC
Q 004924 541 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL 601 (723)
Q Consensus 541 g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~ 601 (723)
..+.+||+-.... +.....+|. ..|..+...+.-+.+.+ +.||.|.+||++..
T Consensus 219 ~~vi~wdigg~~g-----~~~el~gh~---~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 219 HSVIMWDIGGRKG-----TAYELQGHN---DKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred CceEEEeccCCcc-----eeeeeccch---hhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 9999999976422 121234555 67888888777777777 69999999998643
No 250
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.22 E-value=4.4e-09 Score=115.39 Aligned_cols=226 Identities=14% Similarity=0.121 Sum_probs=141.2
Q ss_pred eEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECC---CcEEEEeccCCcccccccceeeeeEEEec
Q 004924 348 KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLYQP 424 (723)
Q Consensus 348 ~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~d---g~i~iWd~~~~~~~~g~~~~~~~~~~~~~ 424 (723)
.|.++|..+ ...+.+. . +...+...+|||||++|+.++.+ ..|.+|++.++..
T Consensus 171 ~l~~~d~~g----~~~~~l~--~--~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~---------------- 226 (417)
T TIGR02800 171 ELQVADYDG----ANPQTIT--R--SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR---------------- 226 (417)
T ss_pred eEEEEcCCC----CCCEEee--c--CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE----------------
Confidence 466666652 3333332 1 55678999999999999988754 3677777653211
Q ss_pred CCCeeeeeccCCCCCCCeEEEEEe--CCEEEEE-e-CC--cEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEEC
Q 004924 425 SSKLVMTNDIAADPKDSISCFALR--GSHLFSA-S-GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD 497 (723)
Q Consensus 425 ~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~-s-dg--~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~ 497 (723)
.... .+...+.+++|+ |+.|+.. + ++ .|.+||+.++... .+..+........|+|+| .++.++.
T Consensus 227 -----~~~~---~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~ 297 (417)
T TIGR02800 227 -----EKVA---SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSD 297 (417)
T ss_pred -----EEee---cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEEC
Confidence 1100 244456678898 6666543 3 44 5888999877543 344444445577899999 7766554
Q ss_pred -CC--cEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCceeeceeeeeeecCCCCCCC
Q 004924 498 -DS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPETT 571 (723)
Q Consensus 498 -dg--~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg---~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~ 571 (723)
++ .|+++|+.+++.. .+..+...+....|+|+|++++.++.++ .|.+||+.++.. ..+... .
T Consensus 298 ~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~------~~l~~~-----~ 365 (417)
T TIGR02800 298 RGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE------RVLTDT-----G 365 (417)
T ss_pred CCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe------EEccCC-----C
Confidence 33 6888898877643 3444556677889999999999888776 788999887431 111211 2
Q ss_pred CeEEEEEccCCCEEEE-EcC---CcEEEEECCCCceeEEecCCCCCCCeEEEEE
Q 004924 572 IVNHIQFHPDQIHLLS-IHE---GQIDVYEAPTLNHTSQLVPDKMDLPITYATY 621 (723)
Q Consensus 572 ~v~~l~~spdg~~l~~-s~d---g~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~ 621 (723)
......|+|||++|+. +.+ ..+++.+. +++....+..+ .+.+..++|
T Consensus 366 ~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~--~g~~~~~~w 416 (417)
T TIGR02800 366 LDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLG--NGDVREPAW 416 (417)
T ss_pred CCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCC--CCCcCCCCC
Confidence 2345689999998887 332 24666665 45544444321 334444444
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=3.4e-09 Score=116.37 Aligned_cols=215 Identities=13% Similarity=0.104 Sum_probs=134.9
Q ss_pred cEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEEC-CC--cEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEE
Q 004924 459 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-DS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 534 (723)
Q Consensus 459 ~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~-dg--~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l 534 (723)
.+.++|..... .+.+......+.+..|+||| .++..+. ++ .|++||+.+++... +....+......|+|||+.|
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 56667765433 34555566778899999999 7776543 33 68999998876533 32223334578999999987
Q ss_pred EE-EeCCCc--EEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E-cC--CcEEEEECCCCceeEEe
Q 004924 535 VS-SGADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HE--GQIDVYEAPTLNHTSQL 607 (723)
Q Consensus 535 ~s-~s~dg~--I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~d--g~I~vwd~~~~~~~~~~ 607 (723)
+. .+.++. |+++|+.+++. ..+... . ......+|+|||+.|+. + .+ ..|+++|+.+++... +
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~------~~lt~~-~---~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-L 345 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKAL------TRITRH-R---AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-L 345 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCe------EECccC-C---CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-E
Confidence 65 455664 77888887532 212222 1 34567899999998886 3 23 357888887776533 2
Q ss_pred cCCCCCCCeEEEEEeeCCcEEEEEeCC-C--cEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEE
Q 004924 608 VPDKMDLPITYATYSCDGKCIYVSCKS-G--HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 684 (723)
Q Consensus 608 ~~~~h~~~v~~l~~spdg~~l~sgs~d-g--~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 684 (723)
... .......+|+|||++|+..+.+ + .|.++|+.+++.. .+.. ..... ...|+| ++++|+..
T Consensus 346 t~~--g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~---------~~~d~--~ps~sp-dG~~I~~~ 410 (448)
T PRK04792 346 TFE--GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTS---------TRLDE--SPSVAP-NGTMVIYS 410 (448)
T ss_pred ecC--CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccC---------CCCCC--CceECC-CCCEEEEE
Confidence 211 2233457899999998876553 4 4666788887643 2321 11111 457999 78877765
Q ss_pred EC-CCc--EEEEecCCCceee
Q 004924 685 LT-NGR--VHVIEPLESEVEW 702 (723)
Q Consensus 685 s~-Dg~--v~iWd~~~~~~~w 702 (723)
+. +|. +++++. +|....
T Consensus 411 ~~~~g~~~l~~~~~-~G~~~~ 430 (448)
T PRK04792 411 TTYQGKQVLAAVSI-DGRFKA 430 (448)
T ss_pred EecCCceEEEEEEC-CCCceE
Confidence 54 343 666676 344333
No 252
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.20 E-value=1.2e-09 Score=114.76 Aligned_cols=198 Identities=14% Similarity=0.072 Sum_probs=146.3
Q ss_pred eCCCCEEEEEECCCcEEEEeccCCcc-----cccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-----CC-E
Q 004924 383 SHSGDFLVALTQTATHKLWKWQSNKQ-----SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GS-H 451 (723)
Q Consensus 383 spdg~~las~s~dg~i~iWd~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-----~~-~ 451 (723)
.|.+.|+|..+.||.+++|+...+.. |......+.....|...-+ .......++.+. +. .
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~---------~s~~k~~~~~~~~~~s~~t~~ 72 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSAD---------YSPMKWLSLEKAKKASLDTSM 72 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEec---------cchHHHHhHHHHhhccCCceE
Confidence 45678999999999999999886544 1111111111122321000 001111111111 22 4
Q ss_pred EEEEe-CCcEEEEEcCCCcEEEEEe--CCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEE
Q 004924 452 LFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 527 (723)
Q Consensus 452 l~s~s-dg~I~vwd~~~~~~~~~~~--~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~ 527 (723)
++-|. .|.|.+|++..|+....+. +|.+.|.++.++.+- .|.+++.|+.+..|+...++.++.+......+.+++.
T Consensus 73 lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~i 152 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCI 152 (541)
T ss_pred EEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEE
Confidence 55566 8999999999999988886 788999999998888 9999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccC-----CCEEEEE--cCCcEEEEECCC
Q 004924 528 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-----QIHLLSI--HEGQIDVYEAPT 600 (723)
Q Consensus 528 spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spd-----g~~l~~s--~dg~I~vwd~~~ 600 (723)
+|||..+++++ +.|++||++++ +.+. .+.||. ++|.++.|.-+ |.+++++ .+..|.+|-+..
T Consensus 153 s~D~~~l~~as--~~ik~~~~~~k-----evv~-~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 153 SPDGKILLTAS--RQIKVLDIETK-----EVVI-TFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cCCCCEEEecc--ceEEEEEccCc-----eEEE-EecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99999999886 68999999994 3344 567887 89999999877 7888874 556777786653
No 253
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.20 E-value=4e-10 Score=125.22 Aligned_cols=185 Identities=10% Similarity=0.017 Sum_probs=142.9
Q ss_pred eEEEEECCCcEEEEeCCCCcEEEEEcCcCCc----EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCC
Q 004924 491 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR----ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 566 (723)
Q Consensus 491 ~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~----i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~ 566 (723)
.++.++.+..+.+||...+............ ..-+.++++.-++++|+.-+.|.+|+.... ..+. ...+|
T Consensus 101 ~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d----n~p~--~l~GH 174 (967)
T KOG0974|consen 101 KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED----NKPI--RLKGH 174 (967)
T ss_pred eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc----CCcc--eeccc
Confidence 7888888899999998877666555432211 112234666678999999999999998731 1222 35678
Q ss_pred CCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCC
Q 004924 567 VPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 645 (723)
Q Consensus 567 ~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~ 645 (723)
. +.|.++.++.||+++++ +.|.++++|++.+++..... .-+|...|+.++|.|+ .++++++|.+.++|+....
T Consensus 175 e---G~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~-~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~ 248 (967)
T KOG0974|consen 175 E---GSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCT-GFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGT 248 (967)
T ss_pred C---CceEEEEEccCCcEEEEEecCcceeeeecccccccCcc-cccccceeEEEEeccc--eeEEeccceEEEEEecccc
Confidence 7 89999999999999999 79999999999998876521 2268999999999998 9999999999999966544
Q ss_pred cEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCC
Q 004924 646 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 646 ~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
+ ...+. +|....++ .++.++ +....+|++.||.+++|++...
T Consensus 249 ~-l~~y~-------~h~g~~iw--~~~~~~-~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 249 Q-LEVYD-------EHSGKGIW--KIAVPI-GVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred e-ehhhh-------hhhhccee--EEEEcC-CceEEEeeccCcchhhhhhhcc
Confidence 3 33554 34455677 888888 7788999999999999998764
No 254
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.19 E-value=2.4e-07 Score=96.25 Aligned_cols=275 Identities=13% Similarity=0.078 Sum_probs=161.9
Q ss_pred CeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEEC----------CCcEEEEeccCCccccccccee
Q 004924 347 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----------TATHKLWKWQSNKQSLEEENVN 416 (723)
Q Consensus 347 g~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~----------dg~i~iWd~~~~~~~~g~~~~~ 416 (723)
++|.+.|..+ .+.... ++. +. .-..+ +||||+.|+.+.. +..|.+||..+.+. ...
T Consensus 27 ~~v~ViD~~~----~~v~g~-i~~-G~--~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-----~~~ 92 (352)
T TIGR02658 27 TQVYTIDGEA----GRVLGM-TDG-GF--LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-----IAD 92 (352)
T ss_pred ceEEEEECCC----CEEEEE-EEc-cC--CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-----EeE
Confidence 7889999874 333222 221 11 12234 9999998888766 67888888775332 111
Q ss_pred eeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe---CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCe
Q 004924 417 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATFANPPPIATYFILLPQDL 491 (723)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s---dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~ 491 (723)
+. -+...+. ........++++ |++++... +..|.+.|+.+++.+..+.-.. ...-...+++.
T Consensus 93 i~----~p~~p~~-------~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~- 159 (352)
T TIGR02658 93 IE----LPEGPRF-------LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDT- 159 (352)
T ss_pred Ec----cCCCchh-------hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCc-
Confidence 10 0000000 001122356667 78888766 5899999999999998886433 12222222222
Q ss_pred EEEEECCCcEEEEeCCC-CcEE-E---EEcCcCCcEE-EEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeec
Q 004924 492 FAFGFDDSSILVHCPCT-KKTK-A---KLKGHQNRIT-CLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT 564 (723)
Q Consensus 492 l~sgs~dg~I~iwd~~~-~~~~-~---~l~~~~~~i~-~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~ 564 (723)
+.+-+.||......+.+ |+.. . .+.+...++. .-.|.+ +|+++.+... |+|.+.|+.+........+..+..
T Consensus 160 ~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~ 238 (352)
T TIGR02658 160 FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTE 238 (352)
T ss_pred cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccc
Confidence 11223344443332221 2211 1 1111000110 003455 7877776666 999999976543333333332111
Q ss_pred CCC---CCCCCeEEEEEccCCCEEEE-E--cC--------CcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCc-EEE
Q 004924 565 GLV---PETTIVNHIQFHPDQIHLLS-I--HE--------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK-CIY 629 (723)
Q Consensus 565 ~~~---~~~~~v~~l~~spdg~~l~~-s--~d--------g~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~-~l~ 629 (723)
+.. -..+.+.-++++|+++.+++ . .. +.|.++|..+++.+..+.. ...+..++++||++ +|+
T Consensus 239 ~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~ly 315 (352)
T TIGR02658 239 AEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAKPLLY 315 (352)
T ss_pred cccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCCeEEE
Confidence 100 00144555999999988887 3 12 4799999999999998865 56899999999999 888
Q ss_pred EEe-CCCcEEEEECCCCcEEEEee
Q 004924 630 VSC-KSGHVKVFDTSTLELRCQIN 652 (723)
Q Consensus 630 sgs-~dg~I~iwd~~~~~~~~~~~ 652 (723)
+.. .++.|.++|..+++.+..+.
T Consensus 316 vtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 316 ALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EeCCCCCcEEEEECcCCeEEeeec
Confidence 766 57889999999999988873
No 255
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=1.2e-08 Score=111.06 Aligned_cols=217 Identities=14% Similarity=0.078 Sum_probs=129.7
Q ss_pred CCceEEEEEeCCCCEEE---EEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--
Q 004924 374 GGRVVRLIYSHSGDFLV---ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 448 (723)
Q Consensus 374 ~~~V~~l~fspdg~~la---s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-- 448 (723)
...+..-+|||||+.++ +...+|.-.||-. +..++...... ...+.....+|+
T Consensus 184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~-------------------~l~~g~~~~lt---~~~g~~~~p~wSPD 241 (428)
T PRK01029 184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLG-------------------SLENPAGKKIL---ALQGNQLMPTFSPR 241 (428)
T ss_pred CCCcccceEccCCCceEEEEEEccCCCceEEEE-------------------ECCCCCceEee---cCCCCccceEECCC
Confidence 45567889999997532 3333444444432 22222211111 123344567899
Q ss_pred CCEEEEEe--CC--c--EEEEEcCCC---cEEEEEeCCCCCeEEEEEcCCC-eEEEEE-CCCc--EEEEeCCC-CcEEEE
Q 004924 449 GSHLFSAS--GG--K--ISIFSLETF---QTLATFANPPPIATYFILLPQD-LFAFGF-DDSS--ILVHCPCT-KKTKAK 514 (723)
Q Consensus 449 ~~~l~s~s--dg--~--I~vwd~~~~---~~~~~~~~~~~~v~~l~~~p~~-~l~sgs-~dg~--I~iwd~~~-~~~~~~ 514 (723)
|+.|+..+ +| . +..|++.++ +..+............+|+||| .|+..+ .+|. |+++++.. +.....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 77877665 23 2 444676653 3333333333344678999999 776655 4564 44445542 333455
Q ss_pred EcCcCCcEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E--
Q 004924 515 LKGHQNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-- 588 (723)
Q Consensus 515 l~~~~~~i~~l~~spdg~~l~s~s~d---g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-- 588 (723)
+..+...+....|+|||+.|+..+.+ ..|.+||+.+++.. . +..+. ..+....|+|||+.|+. +
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~---~---Lt~~~----~~~~~p~wSpDG~~L~f~~~~ 391 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY---Q---LTTSP----ENKESPSWAIDSLHLVYSAGN 391 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE---E---ccCCC----CCccceEECCCCCEEEEEECC
Confidence 55555667788999999998876653 36999999886431 1 22221 35667899999998885 3
Q ss_pred -cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCC
Q 004924 589 -HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG 625 (723)
Q Consensus 589 -~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg 625 (723)
....|+++|+.+++....... .+.+...+|+|-.
T Consensus 392 ~g~~~L~~vdl~~g~~~~Lt~~---~g~~~~p~Ws~~~ 426 (428)
T PRK01029 392 SNESELYLISLITKKTRKIVIG---SGEKRFPSWGAFP 426 (428)
T ss_pred CCCceEEEEECCCCCEEEeecC---CCcccCceecCCC
Confidence 235799999987765443322 4456678888753
No 256
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=6.3e-09 Score=108.58 Aligned_cols=272 Identities=12% Similarity=0.120 Sum_probs=172.6
Q ss_pred ccccccCCCCCEEEEE-----eCC-----CeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCc
Q 004924 328 SRESTSLPDADSAVCA-----KSL-----EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 397 (723)
Q Consensus 328 ~~~~~~spdg~~la~~-----s~d-----g~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~ 397 (723)
.....+||-|.++.+= ..+ -.+.+|++.+ .+....+.. ..+.. |+..|++|..+. +=-..+.
T Consensus 76 ~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet-----~~~~s~~q~-k~Q~~-W~~qfs~dEsl~-arlv~ne 147 (566)
T KOG2315|consen 76 TYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET-----GVQRSQIQK-KMQNG-WVPQFSIDESLA-ARLVSNE 147 (566)
T ss_pred eeeeeecccccccccccccccccCCCCCCCceeeeeecc-----ceehhheeh-hhhcC-cccccccchhhh-hhhhcce
Confidence 3444577777777542 112 3467999884 222111211 02223 899999998743 3223467
Q ss_pred EEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-C---CEEEEEe---C---CcEEEEEcCC
Q 004924 398 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G---SHLFSAS---G---GKISIFSLET 467 (723)
Q Consensus 398 i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~---~~l~s~s---d---g~I~vwd~~~ 467 (723)
+.+|+..+... +... -|...|+.+.++ | ..+|+-- + +.|++|....
T Consensus 148 v~f~~~~~f~~---------------------~~~k---l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~ 203 (566)
T KOG2315|consen 148 VQFYDLGSFKT---------------------IQHK---LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPE 203 (566)
T ss_pred EEEEecCCccc---------------------eeee---eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccc
Confidence 88887653111 1101 267778888888 4 2444422 2 5799998763
Q ss_pred CcEEEEEeC---CCCCeEEEEEcCCC--eEEEE--ECCC---------cEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCC
Q 004924 468 FQTLATFAN---PPPIATYFILLPQD--LFAFG--FDDS---------SILVHCPCTKKTKAKLKGHQNRITCLAYSLSL 531 (723)
Q Consensus 468 ~~~~~~~~~---~~~~v~~l~~~p~~--~l~sg--s~dg---------~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg 531 (723)
......+.. ....-..+.|++-| .|+.+ .-|. ++++.+++...+.-.+. ..++|.++.|+|+|
T Consensus 204 ~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~ 282 (566)
T KOG2315|consen 204 EGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSG 282 (566)
T ss_pred ccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCC
Confidence 222111110 01112367898877 43333 3333 68888877434433343 57899999999999
Q ss_pred CEEEE--EeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E---cCCcEEEEECCCCceeE
Q 004924 532 NVLVS--SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAPTLNHTS 605 (723)
Q Consensus 532 ~~l~s--~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s---~dg~I~vwd~~~~~~~~ 605 (723)
+.+++ |-+-..+.+||++. .++..+.. ++=+++-|+|.|++++. | -.|.|-|||+.+.+++.
T Consensus 283 ~EF~VvyGfMPAkvtifnlr~------~~v~df~e------gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~ 350 (566)
T KOG2315|consen 283 REFAVVYGFMPAKVTIFNLRG------KPVFDFPE------GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIA 350 (566)
T ss_pred CEEEEEEecccceEEEEcCCC------CEeEeCCC------CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcc
Confidence 87654 44667899999987 45554444 46678999999999887 4 34899999999988888
Q ss_pred EecCCCCCCCeEEEEEeeCCcEEEEEeC------CCcEEEEECCCCcEEE
Q 004924 606 QLVPDKMDLPITYATYSCDGKCIYVSCK------SGHVKVFDTSTLELRC 649 (723)
Q Consensus 606 ~~~~~~h~~~v~~l~~spdg~~l~sgs~------dg~I~iwd~~~~~~~~ 649 (723)
.+. ...-+-+.|+|||.++++++. |+.++||++. |.++.
T Consensus 351 ~~~----a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~ 395 (566)
T KOG2315|consen 351 KFK----AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLH 395 (566)
T ss_pred ccc----cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceee
Confidence 775 334556899999999998875 6889999986 44443
No 257
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.17 E-value=1.9e-07 Score=93.36 Aligned_cols=249 Identities=14% Similarity=0.142 Sum_probs=164.1
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-C---CcEEEEEcCC--CcEEE--EEeCCCCCeEEEEEcCCC-eEEEEE-CCCcEEEE
Q 004924 437 DPKDSISCFALR--GSHLFSAS-G---GKISIFSLET--FQTLA--TFANPPPIATYFILLPQD-LFAFGF-DDSSILVH 504 (723)
Q Consensus 437 ~h~~~V~~v~~s--~~~l~s~s-d---g~I~vwd~~~--~~~~~--~~~~~~~~v~~l~~~p~~-~l~sgs-~dg~I~iw 504 (723)
.+.+.++-++|+ ++.|.++. + |.|..|.++. |+... .......+.+.++++++| .++++. ..|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 366778889999 66787776 3 6787777764 44322 222333444789999999 666665 46789999
Q ss_pred eCCC-CcEEEE--EcCcCCc----------EEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCceeeceeeeeeecCCCCCC
Q 004924 505 CPCT-KKTKAK--LKGHQNR----------ITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 570 (723)
Q Consensus 505 d~~~-~~~~~~--l~~~~~~----------i~~l~~spdg~~l~s~s~-dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~ 570 (723)
-++. |..... ...|.+. +.+..+.|+++++++.+- --.|.+|++..|......+.. +..+
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~-v~~G----- 190 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE-VKPG----- 190 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccc-cCCC-----
Confidence 8865 433221 2224444 888999999999888763 346899999987654443333 3333
Q ss_pred CCeEEEEEccCCCEEEE-E-cCCcEEEEECCCC--c--eeEEecC--CC--CCCCeEEEEEeeCCcEEEEEeC-CCcEEE
Q 004924 571 TIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTL--N--HTSQLVP--DK--MDLPITYATYSCDGKCIYVSCK-SGHVKV 639 (723)
Q Consensus 571 ~~v~~l~~spdg~~l~~-s-~dg~I~vwd~~~~--~--~~~~~~~--~~--h~~~v~~l~~spdg~~l~sgs~-dg~I~i 639 (723)
...+.+.|+|++++.+. + -+++|-+|..... + .++.+.. .. .......+..+|||++|+++.. ...|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 67889999999999887 5 7899999998763 2 2222211 01 1455677889999999998765 357888
Q ss_pred EECCCC-cEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECC-CcEEEEecCCCc
Q 004924 640 FDTSTL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-GRVHVIEPLESE 699 (723)
Q Consensus 640 wd~~~~-~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D-g~v~iWd~~~~~ 699 (723)
|.+... ..+..+... + .....+-...++| .+++|+++..| ..|.+|......
T Consensus 271 f~V~~~~g~L~~~~~~---~----teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 271 FSVDPDGGKLELVGIT---P----TEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred EEEcCCCCEEEEEEEe---c----cCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCC
Confidence 877643 222222111 1 1223344788999 78888888755 478888775543
No 258
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=7.9e-09 Score=113.50 Aligned_cols=211 Identities=16% Similarity=0.076 Sum_probs=134.1
Q ss_pred CCCCeEEEEEe--CCEEEEEe--CC--cEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEE-EEECCCc--EEEEeCC
Q 004924 438 PKDSISCFALR--GSHLFSAS--GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSS--ILVHCPC 507 (723)
Q Consensus 438 h~~~V~~v~~s--~~~l~s~s--dg--~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~-sgs~dg~--I~iwd~~ 507 (723)
+...+.+..|+ |+.|+..+ ++ .|.+||+.+++... +....+.....+|+||| .|+ +.+.+|. |+++|+.
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 56678889999 77887765 33 58889998876533 22222334478999999 665 4566664 8888988
Q ss_pred CCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCE
Q 004924 508 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 584 (723)
Q Consensus 508 ~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~-dg--~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~ 584 (723)
+++.. .+..+........|+|||+.++..+. ++ .|.++|+.+++. ..+. ..+ ......+|+|||++
T Consensus 295 tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~---~~Lt--~~g-----~~~~~~~~SpDG~~ 363 (448)
T PRK04792 295 TKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV---SRLT--FEG-----EQNLGGSITPDGRS 363 (448)
T ss_pred CCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEEe--cCC-----CCCcCeeECCCCCE
Confidence 77653 44445556678899999998876654 33 466778776532 1111 122 22345789999999
Q ss_pred EEE-E-cCC--cEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC-C--cEEEEECCCCcEEEEeeccccc
Q 004924 585 LLS-I-HEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-G--HVKVFDTSTLELRCQINLTAYA 657 (723)
Q Consensus 585 l~~-s-~dg--~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d-g--~I~iwd~~~~~~~~~~~~~~~~ 657 (723)
++. + .++ .|.++|+.+++.. .+... .......|+|||+.|+..+.+ | .+++++. +|.....+...
T Consensus 364 l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~---~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~--- 435 (448)
T PRK04792 364 MIMVNRTNGKFNIARQDLETGAMQ-VLTST---RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAG--- 435 (448)
T ss_pred EEEEEecCCceEEEEEECCCCCeE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCC---
Confidence 887 3 333 5677888877653 33221 122345899999988765543 3 3777787 45555555321
Q ss_pred CCCCccCccceEEEEEec
Q 004924 658 QPGTISLELYPLVIAAHP 675 (723)
Q Consensus 658 ~~g~~~~~v~~~~v~~sp 675 (723)
.+.+. ..+|+|
T Consensus 436 -----~g~~~--~p~Wsp 446 (448)
T PRK04792 436 -----QGEVK--SPAWSP 446 (448)
T ss_pred -----CCCcC--CCccCC
Confidence 22233 678887
No 259
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.17 E-value=9.9e-08 Score=112.27 Aligned_cols=353 Identities=12% Similarity=0.137 Sum_probs=202.9
Q ss_pred ccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCc
Q 004924 328 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 407 (723)
Q Consensus 328 ~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~ 407 (723)
.....+.++...++.+..+|.|.+...+.......+..+. .-..+|.+++||||+..|+.++.++++.+-...-..
T Consensus 78 ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG----~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~ 153 (928)
T PF04762_consen 78 IVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVG----SVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP 153 (928)
T ss_pred EEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEE----EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence 3444577888889999999999888332111133333332 136799999999999999999999998776432111
Q ss_pred c--------cccccceeeeeEEEecCC-------Ceeee------------eccCCCCCCCeEEEEEe--CCEEEEEe-C
Q 004924 408 Q--------SLEEENVNMESQLYQPSS-------KLVMT------------NDIAADPKDSISCFALR--GSHLFSAS-G 457 (723)
Q Consensus 408 ~--------~~g~~~~~~~~~~~~~~~-------~~~~~------------~~~~~~h~~~V~~v~~s--~~~l~s~s-d 457 (723)
. ..|. ..-++ --|-.+. |+-.. .... .+.+.-..++|. |.++|+.+ +
T Consensus 154 i~E~~l~~~~~~~-~~~Vs-VGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~-s~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 154 ISEVPLDSDDFGE-SKHVS-VGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKL-SWDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred EEEeecCccccCC-Cceee-eccCcccCccCcchhhhhhhhccCCCCCccccCcc-ccCCCceEEEECCCCcEEEEEEEE
Confidence 1 0000 00000 0022111 11100 0000 033345578888 88888766 2
Q ss_pred ------CcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEEC---CCcEEEEeCCCCcEEEEEc----CcCCcEE
Q 004924 458 ------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCTKKTKAKLK----GHQNRIT 523 (723)
Q Consensus 458 ------g~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~---dg~I~iwd~~~~~~~~~l~----~~~~~i~ 523 (723)
..++||+-+ |....+-..-.+--.+++|.|.| .||+... ...|.+|.- +|-.-..|. .....|.
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~ 308 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVI 308 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceee
Confidence 368999965 66555544444444688999999 8887764 346777773 343333332 3457899
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCC-EEEE-EcCCcEEEEEC---
Q 004924 524 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQIDVYEA--- 598 (723)
Q Consensus 524 ~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~-~l~~-s~dg~I~vwd~--- 598 (723)
.+.|++|+..|+....|. |.+|-..+..-.-+..+. +... ..+..+.|+|... .|.. +.+|.+..++.
T Consensus 309 ~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~-~~~~-----~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~ 381 (928)
T PF04762_consen 309 ELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIR-FSSS-----ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD 381 (928)
T ss_pred EEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEE-ccCC-----CCCCceEECCCCCCEEEEEecCCcEEEEEEEEE
Confidence 999999999999987665 999998874322222222 1111 3455689998653 3333 44465544332
Q ss_pred -CCCc--------eeEEecC--------------C-------CCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEE
Q 004924 599 -PTLN--------HTSQLVP--------------D-------KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELR 648 (723)
Q Consensus 599 -~~~~--------~~~~~~~--------------~-------~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~ 648 (723)
..+. .+..+.+ + .-..+|.+++|++++..+++-..||.|.+|........
T Consensus 382 v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~ 461 (928)
T PF04762_consen 382 VSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMW 461 (928)
T ss_pred EEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcc
Confidence 2110 1111110 0 12578999999999988999999999999986543221
Q ss_pred --------EEeecccccCCCCccCccceEEEEEecCCCCEEEEEECC---CcEEEEecCC
Q 004924 649 --------CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN---GRVHVIEPLE 697 (723)
Q Consensus 649 --------~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D---g~v~iWd~~~ 697 (723)
..+...................++|.. +..+++..+.+ +.+.+++...
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~ 520 (928)
T PF04762_consen 462 SVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLN-DDTLLVLSDSDSNQSKIVLVDIDD 520 (928)
T ss_pred cccCcchhhhcccccccccccccccccEEEEEEeC-CCEEEEEEecCcccceEEEEEecc
Confidence 111110000000001112244788877 45555555443 5777887743
No 260
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.17 E-value=7e-09 Score=109.11 Aligned_cols=190 Identities=13% Similarity=0.127 Sum_probs=138.5
Q ss_pred CCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEe------C--------------CCCEEEEEE
Q 004924 334 LPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS------H--------------SGDFLVALT 393 (723)
Q Consensus 334 spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fs------p--------------dg~~las~s 393 (723)
.|.+.++|....||.++||+... .+.++---|...-++.-.+..|. | |...++-|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~----~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAK----NQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred CchhheEeecCCCCeEEEEEccC----ceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence 35567899999999999999884 22222211210012333344432 1 222344455
Q ss_pred CCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcE
Q 004924 394 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT 470 (723)
Q Consensus 394 ~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~ 470 (723)
..|.|.+|++ ..|++...+..++|.+.|.++.++ -..|.+++ |+.+..|+..++..
T Consensus 78 ~~g~v~~ys~---------------------~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~ 136 (541)
T KOG4547|consen 78 PQGSVLLYSV---------------------AGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI 136 (541)
T ss_pred CCccEEEEEe---------------------cCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee
Confidence 5555555554 444444444445799999999999 66788888 99999999999999
Q ss_pred EEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCC-----CCEEEEE-eCCCcE
Q 004924 471 LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS-----LNVLVSS-GADAQL 543 (723)
Q Consensus 471 ~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spd-----g~~l~s~-s~dg~I 543 (723)
++.+.+....+.+++.+||| .+++++ +.|++||+++++.+..|.||.++|+++.|-.+ |.+++++ ..+..+
T Consensus 137 ~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i 214 (541)
T KOG4547|consen 137 IRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGI 214 (541)
T ss_pred eeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccce
Confidence 99999999999999999999 888886 58999999999999999999999999999776 5665544 445667
Q ss_pred EEEeCCC
Q 004924 544 CVWDAVG 550 (723)
Q Consensus 544 ~vwd~~~ 550 (723)
.+|-+..
T Consensus 215 ~~w~v~~ 221 (541)
T KOG4547|consen 215 TVWVVEK 221 (541)
T ss_pred eEEEEEc
Confidence 7886655
No 261
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.17 E-value=6.6e-10 Score=123.51 Aligned_cols=184 Identities=14% Similarity=0.113 Sum_probs=145.8
Q ss_pred CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCe----EEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcE
Q 004924 449 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA----TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 522 (723)
Q Consensus 449 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v----~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i 522 (723)
+..++.++ +..+.+||...+.....+....... .-+..+++. ++++|+.-+.|.+|+....+.-..+.||.+.|
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~i 178 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSI 178 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCce
Confidence 66677777 8999999998877666655433221 223345666 99999999999999987444334688999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCC
Q 004924 523 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL 601 (723)
Q Consensus 523 ~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~ 601 (723)
.++.|+-||+++++.|+|.++++|++.+.+... ..--+|+ ..|..++|+|+ .+++ +.|-+.++|+. ++
T Consensus 179 F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-----~~~fgHs---aRvw~~~~~~n--~i~t~gedctcrvW~~-~~ 247 (967)
T KOG0974|consen 179 FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-----CTGFGHS---ARVWACCFLPN--RIITVGEDCTCRVWGV-NG 247 (967)
T ss_pred EEEEEccCCcEEEEEecCcceeeeecccccccC-----ccccccc---ceeEEEEeccc--eeEEeccceEEEEEec-cc
Confidence 999999999999999999999999999964322 1334676 89999999998 6666 79999999977 45
Q ss_pred ceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCC
Q 004924 602 NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 644 (723)
Q Consensus 602 ~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~ 644 (723)
.....+..+ ....+..++..++...+++++.||.+++|++..
T Consensus 248 ~~l~~y~~h-~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 248 TQLEVYDEH-SGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ceehhhhhh-hhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 555566542 367899999999999999999999999999864
No 262
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.17 E-value=2.8e-08 Score=107.30 Aligned_cols=274 Identities=12% Similarity=0.039 Sum_probs=169.6
Q ss_pred CCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCcEEEEE
Q 004924 386 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFS 464 (723)
Q Consensus 386 g~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~I~vwd 464 (723)
+..++.++.+|.+..+|..+++. +|....+.. . .......++.++.++ +|.+..+|
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~------------~W~~~~~~~--------~---~~~p~v~~~~v~v~~~~g~l~ald 121 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKR------------LWRVDLDER--------L---SGGVGADGGLVFVGTEKGEVIALD 121 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcE------------eeeecCCCC--------c---ccceEEcCCEEEEEcCCCEEEEEE
Confidence 56788888899998888764332 355332211 0 112333466777777 99999999
Q ss_pred cCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEE-----EEEEcCCCCEEEEEeC
Q 004924 465 LETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT-----CLAYSLSLNVLVSSGA 539 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~-----~l~~spdg~~l~s~s~ 539 (723)
..+|+.+............... .++.++.++.+|.++.||.++|+.+..+......+. +.... +..++.+..
T Consensus 122 ~~tG~~~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~ 198 (377)
T TIGR03300 122 AEDGKELWRAKLSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFA 198 (377)
T ss_pred CCCCcEeeeeccCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECC
Confidence 9999988776533221111112 233677778899999999999998877654322111 11111 246778888
Q ss_pred CCcEEEEeCCCCceeeceeeeeeecCCCCCCCC---e-EEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCCCCCCC
Q 004924 540 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI---V-NHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLP 615 (723)
Q Consensus 540 dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~---v-~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~~ 615 (723)
++.+..+|.++|+......+. ...+... ... + .+..+. ++..++++.+|.++.||..+|+.+...... .
T Consensus 199 ~g~v~ald~~tG~~~W~~~~~-~~~g~~~-~~~~~~~~~~p~~~-~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~---~- 271 (377)
T TIGR03300 199 GGKLVALDLQTGQPLWEQRVA-LPKGRTE-LERLVDVDGDPVVD-GGQVYAVSYQGRVAALDLRSGRVLWKRDAS---S- 271 (377)
T ss_pred CCEEEEEEccCCCEeeeeccc-cCCCCCc-hhhhhccCCccEEE-CCEEEEEEcCCEEEEEECCCCcEEEeeccC---C-
Confidence 999999999988654332221 0110000 000 0 111121 333333468899999999999876655321 1
Q ss_pred eEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEec
Q 004924 616 ITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 695 (723)
Q Consensus 616 v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~ 695 (723)
.... ..++..+++++.||.++.+|..+|+.+...... + ..... .... .+..+++++.||.|++||.
T Consensus 272 ~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~-----~--~~~~s--sp~i---~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 272 YQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDEL-----K--YRQLT--APAV---VGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred ccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEccccc-----c--CCccc--cCEE---ECCEEEEEeCCCEEEEEEC
Confidence 1112 235678888889999999999999887665311 0 11111 1111 2468889999999999999
Q ss_pred CCCceeeecCC
Q 004924 696 LESEVEWGKLP 706 (723)
Q Consensus 696 ~~~~~~w~~~~ 706 (723)
.+++..|....
T Consensus 338 ~tG~~~~~~~~ 348 (377)
T TIGR03300 338 EDGSFVARLKT 348 (377)
T ss_pred CCCCEEEEEEc
Confidence 99999997754
No 263
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=8.6e-09 Score=112.29 Aligned_cols=220 Identities=10% Similarity=0.037 Sum_probs=134.0
Q ss_pred cEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-e--EE-EEECCC--cEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCC
Q 004924 459 KISIFSLETFQTLATFANPPPIATYFILLPQD-L--FA-FGFDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN 532 (723)
Q Consensus 459 ~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~--l~-sgs~dg--~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~ 532 (723)
.|.+.|...+. .+.+........+-.|+||| . ++ +...+| .|++.++.+|+... +....+......|+|||+
T Consensus 166 ~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKK 243 (428)
T ss_pred eEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCC
Confidence 46666665443 34454445556778999998 4 32 343343 68888998876443 332444556789999999
Q ss_pred EEEEEeC-CC----cEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E-cCCc--EEEEECCC-Cc
Q 004924 533 VLVSSGA-DA----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQ--IDVYEAPT-LN 602 (723)
Q Consensus 533 ~l~s~s~-dg----~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~dg~--I~vwd~~~-~~ 602 (723)
.|+..+. +| .+..|++.++.. ....+ +..+.. ......+|+|||+.|+. + .+|. |+++++.. +.
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~--g~~~~-lt~~~~---~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~ 317 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAI--GKPRR-LLNEAF---GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ 317 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCC--CcceE-eecCCC---CCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc
Confidence 8887653 23 344467665311 01111 222221 23457899999998886 4 4554 55555542 22
Q ss_pred eeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC---CcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCC
Q 004924 603 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 679 (723)
Q Consensus 603 ~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~ 679 (723)
....+.. +...+....|||||++|+..+.+ ..|++||+.+++....... ...+. ...|+| ||+
T Consensus 318 ~~~~lt~--~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~---------~~~~~--~p~wSp-DG~ 383 (428)
T PRK01029 318 SPRLLTK--KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS---------PENKE--SPSWAI-DSL 383 (428)
T ss_pred ceEEecc--CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC---------CCCcc--ceEECC-CCC
Confidence 2333332 24566788999999998876543 4699999999876432211 11223 789999 888
Q ss_pred EEEEEEC---CCcEEEEecCCCce
Q 004924 680 RIALGLT---NGRVHVIEPLESEV 700 (723)
Q Consensus 680 ~las~s~---Dg~v~iWd~~~~~~ 700 (723)
.|+..+. ++.|++|++..++.
T Consensus 384 ~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 384 HLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred EEEEEECCCCCceEEEEECCCCCE
Confidence 8775443 35788889877654
No 264
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.14 E-value=9.1e-09 Score=99.16 Aligned_cols=270 Identities=14% Similarity=0.076 Sum_probs=163.4
Q ss_pred CCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeC---CCC-EEEEEECCCcEEEEeccCCcccccccceeeeeEE
Q 004924 346 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH---SGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQL 421 (723)
Q Consensus 346 dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fsp---dg~-~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~ 421 (723)
-|++.+|++.+.+... ...+.- .-++.+..+.|.. +|. .++-+-.+|.|.++....... ...
T Consensus 45 ~Gkl~Lys~~d~~~~~-l~~~q~---~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~s----------s~~ 110 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSP-LDTLQC---TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDES----------SVH 110 (339)
T ss_pred ccceEEEeecccccCc-cceeee---ecccccceeeeeeccCCccceeeeccccceEEEEeecccee----------eee
Confidence 4667788877533222 111111 1355667777763 444 455556678888887542211 001
Q ss_pred EecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcE--EEEEeCCCCCeEEEEEcCCC--eEEE
Q 004924 422 YQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT--LATFANPPPIATYFILLPQD--LFAF 494 (723)
Q Consensus 422 ~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~--~~~~~~~~~~v~~l~~~p~~--~l~s 494 (723)
..+-+..-+ ......++.|+ +..++++. +|.+.+-+...... .+.++.|.-.++...|+... .+.+
T Consensus 111 L~~ls~~ki-------~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvyt 183 (339)
T KOG0280|consen 111 LRGLSSKKI-------SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYT 183 (339)
T ss_pred ecccchhhh-------hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEe
Confidence 111111000 01123456677 66677776 88888666554443 34788999999999998776 8999
Q ss_pred EECCCcEEEEeCC-CCcEEEE-EcCcCCcEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCC
Q 004924 495 GFDDSSILVHCPC-TKKTKAK-LKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 571 (723)
Q Consensus 495 gs~dg~I~iwd~~-~~~~~~~-l~~~~~~i~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~ 571 (723)
|+.|+.+..||++ .++.+.. -+.|...|.++.-+| .+.++++|+.|-.|++||.++- .+++.....+ +
T Consensus 184 GgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm----~kPl~~~~v~-----G 254 (339)
T KOG0280|consen 184 GGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM----GKPLFKAKVG-----G 254 (339)
T ss_pred cCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcc----cCccccCccc-----c
Confidence 9999999999998 3444433 455889999998877 5789999999999999999962 2344322222 7
Q ss_pred CeEEEEEccCC--CEEEEEcCCcEEEEECCCCcee---EEecCCCCCCCeEEEEEeeCCcEEEEEe-CCCcEE-EEECCC
Q 004924 572 IVNHIQFHPDQ--IHLLSIHEGQIDVYEAPTLNHT---SQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVK-VFDTST 644 (723)
Q Consensus 572 ~v~~l~~spdg--~~l~~s~dg~I~vwd~~~~~~~---~~~~~~~h~~~v~~l~~spdg~~l~sgs-~dg~I~-iwd~~~ 644 (723)
.|..+.++|.- +.++++.-+..+|-+...+... .......|.+-+....|.....++++++ .|+.++ +|-..+
T Consensus 255 GVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 255 GVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 89999999964 3344565556667666543321 1111113455555555643345677654 355544 665444
Q ss_pred C
Q 004924 645 L 645 (723)
Q Consensus 645 ~ 645 (723)
+
T Consensus 335 ~ 335 (339)
T KOG0280|consen 335 G 335 (339)
T ss_pred C
Confidence 3
No 265
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.13 E-value=9.7e-08 Score=103.14 Aligned_cols=295 Identities=10% Similarity=0.052 Sum_probs=177.9
Q ss_pred CCCEEEEEeCCCeEEEEeecccCCCCcee-EEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccc
Q 004924 336 DADSAVCAKSLEKSVNLKLQLINEPSECR-TLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN 414 (723)
Q Consensus 336 dg~~la~~s~dg~v~iw~~~~~~~~~~~~-~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~ 414 (723)
.+..+++++.++.+.-+|..+ ++.. ...+++ .+.. ....++..++.++.+|.+..+|..+++.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~t----G~~~W~~~~~~-----~~~~-~p~v~~~~v~v~~~~g~l~ald~~tG~~------ 127 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAET----GKRLWRVDLDE-----RLSG-GVGADGGLVFVGTEKGEVIALDAEDGKE------ 127 (377)
T ss_pred ECCEEEEECCCCeEEEEEccC----CcEeeeecCCC-----Cccc-ceEEcCCEEEEEcCCCEEEEEECCCCcE------
Confidence 466788888889998888764 3322 222322 1111 1112566788888899999988764332
Q ss_pred eeeeeEEEecCCCeeeeeccCCCCCCCeEE-EEEeCCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeE-----EEEEc
Q 004924 415 VNMESQLYQPSSKLVMTNDIAADPKDSISC-FALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIAT-----YFILL 487 (723)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-v~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~-----~l~~~ 487 (723)
+|....+ ..+.+ ....++.++.++ +|.+..||.++|+.+..+........ +....
T Consensus 128 ------~W~~~~~------------~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~ 189 (377)
T TIGR03300 128 ------LWRAKLS------------SEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA 189 (377)
T ss_pred ------eeeeccC------------ceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE
Confidence 3543221 11111 112355666666 99999999999998887754332211 11111
Q ss_pred CCCeEEEEECCCcEEEEeCCCCcEEEEEcCcC----Cc---EEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCceeecee
Q 004924 488 PQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ----NR---ITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKF 558 (723)
Q Consensus 488 p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~~----~~---i~~l~~sp--dg~~l~s~s~dg~I~vwd~~~~~~~~~~~ 558 (723)
++.++.+..++.+..+|..+|+.+....... .. ...+.-+| .+..+++++.+|.++.||..+|+......
T Consensus 190 -~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~ 268 (377)
T TIGR03300 190 -DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD 268 (377)
T ss_pred -CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec
Confidence 2367788888999999999998765432110 00 00011111 34578888889999999999875433221
Q ss_pred eeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcE
Q 004924 559 LHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 637 (723)
Q Consensus 559 l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I 637 (723)
. ........ ++..+++ +.+|.++.+|..+|+.+....... .....+... .+..|++++.+|.|
T Consensus 269 ~-----------~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~-~~~~ssp~i--~g~~l~~~~~~G~l 332 (377)
T TIGR03300 269 A-----------SSYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELK-YRQLTAPAV--VGGYLVVGDFEGYL 332 (377)
T ss_pred c-----------CCccCceE--eCCEEEEECCCCeEEEEECCCCcEEEcccccc-CCccccCEE--ECCEEEEEeCCCEE
Confidence 1 11112222 3445555 688999999999998765542111 112222222 46789999999999
Q ss_pred EEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEE
Q 004924 638 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 693 (723)
Q Consensus 638 ~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW 693 (723)
+++|..+|+.+..+..+ ...+.. ..+.. + +.|..++.||.|+.|
T Consensus 333 ~~~d~~tG~~~~~~~~~--------~~~~~~-sp~~~--~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 333 HWLSREDGSFVARLKTD--------GSGIAS-PPVVV--G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEECCCCCEEEEEEcC--------CCcccc-CCEEE--C-CEEEEEeCCceEEEe
Confidence 99999999999887642 111221 22222 2 458888999999876
No 266
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.11 E-value=1.6e-07 Score=96.11 Aligned_cols=167 Identities=14% Similarity=0.114 Sum_probs=127.9
Q ss_pred CCEEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCC-cEEEEeCCCCcEEEEEcCcCCcEEEEE
Q 004924 449 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-SILVHCPCTKKTKAKLKGHQNRITCLA 526 (723)
Q Consensus 449 ~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg-~I~iwd~~~~~~~~~l~~~~~~i~~l~ 526 (723)
|++++..+.|...+.+...+-.++. ++.+.|.-..+..++ .++.|..|| .+-|+|.++++. +.+...-+.|.++.
T Consensus 332 Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~ 408 (668)
T COG4946 332 GDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVK 408 (668)
T ss_pred CcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEE
Confidence 8999999999988888766554433 566778888888888 899999999 899999987754 45555678899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cC----CcEEEEECCCC
Q 004924 527 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE----GQIDVYEAPTL 601 (723)
Q Consensus 527 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~d----g~I~vwd~~~~ 601 (723)
.+|+|+.++.+.....|.+.|+.+|.. +.+..... +-|+.+.|||+++++|-+ -+ ..|+++|+.++
T Consensus 409 vs~dGK~~vvaNdr~el~vididngnv------~~idkS~~---~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 409 VSPDGKKVVVANDRFELWVIDIDNGNV------RLIDKSEY---GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred EcCCCcEEEEEcCceEEEEEEecCCCe------eEeccccc---ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 999999999999999999999999742 21222332 689999999999999975 33 47999999887
Q ss_pred ceeEEecCCCCCCCeEEEEEeeCCcEEEE
Q 004924 602 NHTSQLVPDKMDLPITYATYSCDGKCIYV 630 (723)
Q Consensus 602 ~~~~~~~~~~h~~~v~~l~~spdg~~l~s 630 (723)
+....-.+ ...=.+-+|.||+++|+-
T Consensus 480 Kiy~vTT~---ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 480 KIYDVTTP---TAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred eEEEecCC---cccccCcccCCCCcEEEE
Confidence 76554433 233345667777776654
No 267
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.10 E-value=3.1e-07 Score=95.50 Aligned_cols=229 Identities=11% Similarity=-0.016 Sum_probs=140.8
Q ss_pred CCcEEEEEcCCCcEEEEEeCCCC-------CeEEEEEcCCC-eEEEEE-C-CCcEEEEeCCCCcEEEEEcCcCCcEEEEE
Q 004924 457 GGKISIFSLETFQTLATFANPPP-------IATYFILLPQD-LFAFGF-D-DSSILVHCPCTKKTKAKLKGHQNRITCLA 526 (723)
Q Consensus 457 dg~I~vwd~~~~~~~~~~~~~~~-------~v~~l~~~p~~-~l~sgs-~-dg~I~iwd~~~~~~~~~l~~~~~~i~~l~ 526 (723)
+..|.+||..+++.+..+.-... ....++++||| ++++.. . +..|.+.|+.+++.+..+..-. ...-..
T Consensus 76 ~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~ 154 (352)
T TIGR02658 76 TDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFP 154 (352)
T ss_pred CCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEE
Confidence 47899999999999988873222 23478999999 777665 3 7899999999999988876411 111112
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCe-EEEEEcc-CCCEEEEEcCCcEEEEECCCC---
Q 004924 527 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV-NHIQFHP-DQIHLLSIHEGQIDVYEAPTL--- 601 (723)
Q Consensus 527 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v-~~l~~sp-dg~~l~~s~dg~I~vwd~~~~--- 601 (723)
.+++..+ +-+.||......+.+.......... +..+.. .++ ..-.|++ +|+++.++.+|.|++.|+...
T Consensus 155 t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~-vf~~~~---~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~ 228 (352)
T TIGR02658 155 TANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTE-VFHPED---EYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAK 228 (352)
T ss_pred ecCCccE--EEeecCceEEEEecCCCceEEeeee-eecCCc---cccccCCceEcCCCcEEEEecCCeEEEEecCCCcce
Confidence 2222211 1233444443333221111111111 111100 000 0014455 899998887799999996432
Q ss_pred --ceeEEecCC-----CCCCCeEEEEEeeCCcEEEEEeC----------CCcEEEEECCCCcEEEEeecccccCCCCccC
Q 004924 602 --NHTSQLVPD-----KMDLPITYATYSCDGKCIYVSCK----------SGHVKVFDTSTLELRCQINLTAYAQPGTISL 664 (723)
Q Consensus 602 --~~~~~~~~~-----~h~~~v~~l~~spdg~~l~sgs~----------dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~ 664 (723)
+....+... -..+.+.-++++|+++.+++... .+.|.++|..+++.+..+.. +.
T Consensus 229 ~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---------G~ 299 (352)
T TIGR02658 229 FLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---------GH 299 (352)
T ss_pred ecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---------CC
Confidence 222222111 01233344999999998887431 25799999999999998864 33
Q ss_pred ccceEEEEEecCCCC-EEEEEE-CCCcEEEEecCCCceeeec
Q 004924 665 ELYPLVIAAHPLEPN-RIALGL-TNGRVHVIEPLESEVEWGK 704 (723)
Q Consensus 665 ~v~~~~v~~sp~d~~-~las~s-~Dg~v~iWd~~~~~~~w~~ 704 (723)
..+ .++++| |++ +|.+.. .++.|.|.|..+++..-..
T Consensus 300 ~~~--~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 300 EID--SINVSQ-DAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred cee--eEEECC-CCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 344 899999 777 766555 6789999999998765443
No 268
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.09 E-value=9.1e-07 Score=90.65 Aligned_cols=168 Identities=13% Similarity=0.059 Sum_probs=119.5
Q ss_pred eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCceeeceeeeeeecCCCCC
Q 004924 491 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-QLCVWDAVGWKKLCSKFLHSFQTGLVPE 569 (723)
Q Consensus 491 ~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg-~I~vwd~~~~~~~~~~~l~~~~~~~~~~ 569 (723)
+++..| -|...+.+...+-.++ -+|.+.|.-..+..+++-++.|..|| .+-++|..+++... +..+-
T Consensus 334 ~ia~VS-RGkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr------~e~~l--- 401 (668)
T COG4946 334 YIALVS-RGKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR------IEKDL--- 401 (668)
T ss_pred EEEEEe-cCcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE------eeCCc---
Confidence 555555 3455565554443332 23666788888888888899999999 89999999975322 22222
Q ss_pred CCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC----CcEEEEECCC
Q 004924 570 TTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS----GHVKVFDTST 644 (723)
Q Consensus 570 ~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d----g~I~iwd~~~ 644 (723)
+.|.++..+|+|++++++ ....|.+.|+.+|+....-+ ...+-|+...|||+++++|-+--+ ..|+++|+.+
T Consensus 402 -g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk--S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 402 -GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK--SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred -cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc--cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 689999999999999987 45689999999998643322 236789999999999999977665 4689999999
Q ss_pred CcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEE
Q 004924 645 LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 685 (723)
Q Consensus 645 ~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 685 (723)
++....-+.. ..-+ +-+|.| ++++|.--|
T Consensus 479 ~Kiy~vTT~t---------a~Df--sPaFD~-d~ryLYfLs 507 (668)
T COG4946 479 GKIYDVTTPT---------AYDF--SPAFDP-DGRYLYFLS 507 (668)
T ss_pred CeEEEecCCc---------cccc--CcccCC-CCcEEEEEe
Confidence 9876554321 1122 667888 777765443
No 269
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.05 E-value=2e-07 Score=96.46 Aligned_cols=281 Identities=12% Similarity=0.061 Sum_probs=175.6
Q ss_pred eeeCCCcccccccCCCCCEEEEEeCCC---------------eEEEEeecccCCCCceeEEecCCCCCCCceE-EEEEeC
Q 004924 321 CFNDNNQSRESTSLPDADSAVCAKSLE---------------KSVNLKLQLINEPSECRTLLLPDNSFGGRVV-RLIYSH 384 (723)
Q Consensus 321 ~~~~~~~~~~~~~spdg~~la~~s~dg---------------~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~-~l~fsp 384 (723)
....+.......+||.+++|++=+..+ .+.+||..+ +.+... +++.....-.| -+.|+-
T Consensus 67 ~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~s----g~iv~s-f~~~~q~~~~Wp~~k~s~ 141 (561)
T COG5354 67 VRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIAS----GMIVFS-FNGISQPYLGWPVLKFSI 141 (561)
T ss_pred eeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccC----ceeEee-ccccCCcccccceeeeee
Confidence 444555566677999999999865543 489999884 443322 33311222256 788999
Q ss_pred CCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe----CCEEEEE-----
Q 004924 385 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSA----- 455 (723)
Q Consensus 385 dg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s----~~~l~s~----- 455 (723)
+.+|+|-. ....+.|+++ +... .......--...|....|+ +..||.-
T Consensus 142 ~D~y~ARv-v~~sl~i~e~-t~n~---------------------~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~ 198 (561)
T COG5354 142 DDKYVARV-VGSSLYIHEI-TDNI---------------------EEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKL 198 (561)
T ss_pred cchhhhhh-ccCeEEEEec-CCcc---------------------ccCchhhccccceeeEEecCCCCCceEEEEccccC
Confidence 98887765 3346777775 2111 0000000012345555666 1234432
Q ss_pred e-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEE----E-------CCCcEEEEeCCCCcEEEEEcCcCCcE
Q 004924 456 S-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG----F-------DDSSILVHCPCTKKTKAKLKGHQNRI 522 (723)
Q Consensus 456 s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sg----s-------~dg~I~iwd~~~~~~~~~l~~~~~~i 522 (723)
+ .+++++|.+..+..+.+-.-....-..+.|.+.| .+++- . ....+++++++... +.......++|
T Consensus 199 ~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pV 277 (561)
T COG5354 199 NKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPV 277 (561)
T ss_pred CCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccc
Confidence 2 5789999998766655433222222368899988 33321 1 12467888887433 33333567899
Q ss_pred EEEEEcCCCCEEEEE--eCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E---cCCcEEEE
Q 004924 523 TCLAYSLSLNVLVSS--GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVY 596 (723)
Q Consensus 523 ~~l~~spdg~~l~s~--s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s---~dg~I~vw 596 (723)
...+|.|.++.+++. -.+..+.++|+++. ....++. ..=..+.|+|.+++++. + -.|.|-+|
T Consensus 278 hdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N------l~~~~Pe------~~rNT~~fsp~~r~il~agF~nl~gni~i~ 345 (561)
T COG5354 278 HDFTWEPLSSRFAVISGYMPASVSVFDLRGN------LRFYFPE------QKRNTIFFSPHERYILFAGFDNLQGNIEIF 345 (561)
T ss_pred eeeeecccCCceeEEecccccceeecccccc------eEEecCC------cccccccccCcccEEEEecCCccccceEEe
Confidence 999999998876554 47888999999983 1221222 23457889999999987 5 34789999
Q ss_pred ECCCCceeE-EecCCCCCCCeEEEEEeeCCcEEEEEeC------CCcEEEEECCCCc
Q 004924 597 EAPTLNHTS-QLVPDKMDLPITYATYSCDGKCIYVSCK------SGHVKVFDTSTLE 646 (723)
Q Consensus 597 d~~~~~~~~-~~~~~~h~~~v~~l~~spdg~~l~sgs~------dg~I~iwd~~~~~ 646 (723)
|......+. .+. .....-+.|+||++++.+... |..|.|||+....
T Consensus 346 ~~~~rf~~~~~~~----~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 346 DPAGRFKVAGAFN----GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred ccCCceEEEEEee----cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 987654443 443 334556789999999887653 7889999987543
No 270
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.04 E-value=2e-07 Score=111.83 Aligned_cols=253 Identities=11% Similarity=0.043 Sum_probs=157.9
Q ss_pred EEEEEe--CC-EEEEEe-CCcEEEEEcCCCcEEEEEeC--C------------CCCeEEEEEcCCC-eEEEEE-CCCcEE
Q 004924 443 SCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFAN--P------------PPIATYFILLPQD-LFAFGF-DDSSIL 502 (723)
Q Consensus 443 ~~v~~s--~~-~l~s~s-dg~I~vwd~~~~~~~~~~~~--~------------~~~v~~l~~~p~~-~l~sgs-~dg~I~ 502 (723)
..++++ ++ .+++-. ++.|++||.. +..+..+.+ . -.....+++++++ .|+++. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 456776 34 444444 7899999975 554444432 1 1234688999887 555554 456899
Q ss_pred EEeCCCCcEEEEEcCc-----------------CCcEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeecee--eeee
Q 004924 503 VHCPCTKKTKAKLKGH-----------------QNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKF--LHSF 562 (723)
Q Consensus 503 iwd~~~~~~~~~l~~~-----------------~~~i~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~--l~~~ 562 (723)
++|..++. +..+.+. -.....++++| ++..+++.+.++.|++||..++....... ....
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence 99987754 3333210 11335789999 56666777788999999998753211000 0000
Q ss_pred ecCCC---CCCCCeEEEEEccCCCEEEE--EcCCcEEEEECCCCceeEEecC-----------CC--------CCCCeEE
Q 004924 563 QTGLV---PETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVP-----------DK--------MDLPITY 618 (723)
Q Consensus 563 ~~~~~---~~~~~v~~l~~spdg~~l~~--s~dg~I~vwd~~~~~~~~~~~~-----------~~--------h~~~v~~ 618 (723)
..++. ........++++|+|..|++ +.++.|++||+.++......-. .. .......
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 00000 00034567999999986665 3678999999987653211100 00 0123468
Q ss_pred EEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccc--cCCCC--ccCccceEEEEEecCCCCEEEEEECCCcEEEEe
Q 004924 619 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY--AQPGT--ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 694 (723)
Q Consensus 619 l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~--~~~g~--~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd 694 (723)
++++++|..+++-+.++.|++||..++....... ... ...|. ...--.+..+++++ +|+++++.+.+++|++||
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG-~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG-TGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec-cCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 9999999988888889999999999887654332 110 00010 00111355899999 889999989999999999
Q ss_pred cCCCc
Q 004924 695 PLESE 699 (723)
Q Consensus 695 ~~~~~ 699 (723)
+.+++
T Consensus 887 ~~~~~ 891 (1057)
T PLN02919 887 LNKGE 891 (1057)
T ss_pred CCCCc
Confidence 98875
No 271
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=1.7e-09 Score=111.75 Aligned_cols=270 Identities=12% Similarity=0.135 Sum_probs=169.9
Q ss_pred CCCCEEEEEeCCCeEEEEeecccCCCC---ceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCccccc
Q 004924 335 PDADSAVCAKSLEKSVNLKLQLINEPS---ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 411 (723)
Q Consensus 335 pdg~~la~~s~dg~v~iw~~~~~~~~~---~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g 411 (723)
.+.+.+++++.|.+|++|.+....+.. .|+ +++.. |+.+|..+.|-.+-++++++ ||.|.+||.--+
T Consensus 745 dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQ-fTY~a--Hkk~i~~igfL~~lr~i~Sc--D~giHlWDPFig----- 814 (1034)
T KOG4190|consen 745 DNENSFISASKDKTVKLWSIKPEGDEIGTSACQ-FTYQA--HKKPIHDIGFLADLRSIASC--DGGIHLWDPFIG----- 814 (1034)
T ss_pred ccccceeeccCCceEEEEEeccccCccccceee-eEhhh--ccCcccceeeeeccceeeec--cCcceeeccccc-----
Confidence 455668999999999999998543222 243 33544 99999999999999988776 889999996522
Q ss_pred ccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEE-e-CCcEEEEEcCCCcEEEEEe-----CCCCCeEE
Q 004924 412 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSA-S-GGKISIFSLETFQTLATFA-----NPPPIATY 483 (723)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~-s-dg~I~vwd~~~~~~~~~~~-----~~~~~v~~ 483 (723)
.....+ .|++.. +..+.|.|+.-- ...+..| + ..+|+++|.+.++....++ +++..+.+
T Consensus 815 r~Laq~---~dapk~----------~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ 881 (1034)
T KOG4190|consen 815 RLLAQM---EDAPKE----------GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA 881 (1034)
T ss_pred chhHhh---hcCccc----------CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence 221111 133322 123344444432 3344444 4 7999999999887766654 45567899
Q ss_pred EEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEE-EeCCCCceeeceeeee
Q 004924 484 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV-WDAVGWKKLCSKFLHS 561 (723)
Q Consensus 484 l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~v-wd~~~~~~~~~~~l~~ 561 (723)
++..+.| ++++|-.+|.|.+.|.++|+.+..++...-....++ .|....++....|.++.| |....|...-.....
T Consensus 882 iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpp- 959 (1034)
T KOG4190|consen 882 IAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPP- 959 (1034)
T ss_pred EEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCC-
Confidence 9999999 999999999999999999999888775444333333 345566777778888888 876664211100000
Q ss_pred eecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECC----CCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCc
Q 004924 562 FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP----TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH 636 (723)
Q Consensus 562 ~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~----~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~ 636 (723)
....|. .-.-|.-+++. ....+.||--. ....+..+.+....+..++++--|-..-+++|.+.|.
T Consensus 960 pepahf----------lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~ 1029 (1034)
T KOG4190|consen 960 PEPAHF----------LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGA 1029 (1034)
T ss_pred Ccchhh----------hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCc
Confidence 000110 01124445554 33345555321 0111223333334667788888887777778888888
Q ss_pred EEE
Q 004924 637 VKV 639 (723)
Q Consensus 637 I~i 639 (723)
|.+
T Consensus 1030 IaL 1032 (1034)
T KOG4190|consen 1030 IAL 1032 (1034)
T ss_pred eee
Confidence 865
No 272
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.02 E-value=1.7e-09 Score=125.54 Aligned_cols=182 Identities=14% Similarity=0.192 Sum_probs=143.3
Q ss_pred ccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCc
Q 004924 328 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 407 (723)
Q Consensus 328 ~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~ 407 (723)
....+..|.-.+.++|+.||.|++|.... +..+...+..| ...|+.+.|+..|..+..+..||.+.+|......
T Consensus 2211 v~r~~sHp~~~~Yltgs~dgsv~~~~w~~---~~~v~~~rt~g---~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~ 2284 (2439)
T KOG1064|consen 2211 VRRMTSHPSDPYYLTGSQDGSVRMFEWGH---GQQVVCFRTAG---NSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKP 2284 (2439)
T ss_pred eeeecCCCCCceEEecCCCceEEEEeccC---CCeEEEeeccC---cchhhhhhhcccCCceeeeccCCceeecccCCcc
Confidence 33444567888999999999999999874 34444443333 4899999999999999999999999999865221
Q ss_pred ccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe----CCcEEEEEcCCC---cEEEEEeCCCCC
Q 004924 408 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS----GGKISIFSLETF---QTLATFANPPPI 480 (723)
Q Consensus 408 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s----dg~I~vwd~~~~---~~~~~~~~~~~~ 480 (723)
. .-|. .|.....++.|-+..+++++ ++.+.+||..-. .++. .+|.+.
T Consensus 2285 ~-----------~s~q-------------chnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~g 2338 (2439)
T KOG1064|consen 2285 Y-----------TSWQ-------------CHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGG 2338 (2439)
T ss_pred e-----------eccc-------------cCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCC
Confidence 1 1122 68888888888887788776 478999997432 2233 789999
Q ss_pred eEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 004924 481 ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 551 (723)
Q Consensus 481 v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~ 551 (723)
++++++.|.. .|++|+.+|.|++||++..+.++.++. ++ ...++++|+..|.++||++...
T Consensus 2339 aT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2339 ATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred ceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence 9999999999 999999999999999998888777663 44 4568999999999999999874
No 273
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=2.6e-08 Score=107.22 Aligned_cols=295 Identities=11% Similarity=0.102 Sum_probs=195.4
Q ss_pred cCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEE
Q 004924 368 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 447 (723)
Q Consensus 368 l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 447 (723)
+||.-|...-.++.|+|.|- +|.|+. ..|.+-|..+ -+.++.+. .|...|+.+.|
T Consensus 9 lpG~l~~sN~~A~Dw~~~GL-iAygsh-slV~VVDs~s---------------------~q~iqsie--~h~s~V~~VrW 63 (1062)
T KOG1912|consen 9 LPGPLSRSNRNAADWSPSGL-IAYGSH-SLVSVVDSRS---------------------LQLIQSIE--LHQSAVTSVRW 63 (1062)
T ss_pred CCCCCCcccccccccCccce-EEEecC-ceEEEEehhh---------------------hhhhhccc--cCccceeEEEe
Confidence 55544666788899999984 565554 4666666442 12222222 58899999999
Q ss_pred e--------CC------EEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCC---C--eEEEEECCCcEEEEeCC
Q 004924 448 R--------GS------HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ---D--LFAFGFDDSSILVHCPC 507 (723)
Q Consensus 448 s--------~~------~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~---~--~l~sgs~dg~I~iwd~~ 507 (723)
. +. .||++. .|.|.+||...+..+..+..+..++..++|-+. . .+++-....++.+|+..
T Consensus 64 ap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd 143 (1062)
T KOG1912|consen 64 APAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD 143 (1062)
T ss_pred ccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc
Confidence 7 11 456666 799999999999888889999999999998653 2 56666777899999999
Q ss_pred CCcEEEEEcCcCCcEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCce--eeceeeeeeecCCCC----------------
Q 004924 508 TKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKK--LCSKFLHSFQTGLVP---------------- 568 (723)
Q Consensus 508 ~~~~~~~l~~~~~~i~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~--~~~~~l~~~~~~~~~---------------- 568 (723)
+|+...+.........|+.+.| |.+.+..-+..|.+.+-+.-.-.. ...+.++ +...|..
T Consensus 144 tG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q-I~sd~Sdl~~lere~at~ns~ts 222 (1062)
T KOG1912|consen 144 TGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ-ITSDHSDLAHLERETATGNSTTS 222 (1062)
T ss_pred CCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEE-EecCccchhhhhhhhhccccccC
Confidence 9999888776667788899999 667777777777777665532110 1112222 2222210
Q ss_pred CCC------CeEEEEEccCCCEEE-EEcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCC--cEEEEEeCCCcEEE
Q 004924 569 ETT------IVNHIQFHPDQIHLL-SIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG--KCIYVSCKSGHVKV 639 (723)
Q Consensus 569 ~~~------~v~~l~~spdg~~l~-~s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg--~~l~sgs~dg~I~i 639 (723)
... ....++|+|.-+.++ ......+.++|++-..++.....+ .+.+.-+.+-|++ ..|+++-.||.+.+
T Consensus 223 ~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpie--r~~akfv~vlP~~~rd~LfclH~nG~lti 300 (1062)
T KOG1912|consen 223 TPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIE--RGGAKFVDVLPDPRRDALFCLHSNGRLTI 300 (1062)
T ss_pred CCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEec--cCCcceeEeccCCCcceEEEEecCCeEEE
Confidence 000 011356788765444 478889999999888888777553 4555556666665 57999999999999
Q ss_pred EECCCC----------------cEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 640 FDTSTL----------------ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 640 wd~~~~----------------~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
|-.+.. .....+.. .....+...+-.|.+.+.++..-.+|.+.+|.+.+|+
T Consensus 301 rvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~---------m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r 367 (1062)
T KOG1912|consen 301 RVRKEEPTEFKKPNASLSMDLGEQVHVVRP---------MEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR 367 (1062)
T ss_pred EEeeccCccccccchhhccccccceEEEee---------chhcccceeecCCCChhhhhhhhhcchhHHHhhhcCC
Confidence 987652 22222211 1112233444456446666666678899999998764
No 274
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=7.3e-08 Score=102.82 Aligned_cols=259 Identities=10% Similarity=0.063 Sum_probs=171.4
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccCCCCceeE----------EecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEe
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRT----------LLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK 402 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~----------~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd 402 (723)
+.....+||+|+.||.+++-.+.+..+...... .+++ ||...|.-+.|+.+.+.|-|...+|.|.||-
T Consensus 22 WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLe--GH~~sV~vvTWNe~~QKLTtSDt~GlIiVWm 99 (1189)
T KOG2041|consen 22 WNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLE--GHNASVMVVTWNENNQKLTTSDTSGLIIVWM 99 (1189)
T ss_pred EcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhc--cCcceEEEEEeccccccccccCCCceEEEEe
Confidence 666778999999999999998875432222211 1244 5999999999999999888888899999998
Q ss_pred ccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEE-EEEeCCC
Q 004924 403 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTL-ATFANPP 478 (723)
Q Consensus 403 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~-~~~~~~~ 478 (723)
+-.+.. - ........++.|.+++|+ |..++..- ||.|.|=.++..+.. +.++ .
T Consensus 100 lykgsW--------------~-------EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g 156 (1189)
T KOG2041|consen 100 LYKGSW--------------C-------EEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK--G 156 (1189)
T ss_pred eecccH--------------H-------HHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc--h
Confidence 765433 0 000111356678888998 77777777 888877666532211 1122 1
Q ss_pred CCeEEEEEcCCC-eEEEEECCCcEEEEeCCCC-------cEEE----EEcCcCCcEEEEEEc--------CCCCEEEEEe
Q 004924 479 PIATYFILLPQD-LFAFGFDDSSILVHCPCTK-------KTKA----KLKGHQNRITCLAYS--------LSLNVLVSSG 538 (723)
Q Consensus 479 ~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~-------~~~~----~l~~~~~~i~~l~~s--------pdg~~l~s~s 538 (723)
.....+.|++|. .++.+-.+|.+.+||.... .+.- .+......|..+.|. ||...++++-
T Consensus 157 ~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy 236 (1189)
T KOG2041|consen 157 QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY 236 (1189)
T ss_pred heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE
Confidence 223478899999 7777888899999996532 1111 122233346666663 5778899999
Q ss_pred CCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcC---------CcEEEEECCCCceeEEec
Q 004924 539 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE---------GQIDVYEAPTLNHTSQLV 608 (723)
Q Consensus 539 ~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~d---------g~I~vwd~~~~~~~~~~~ 608 (723)
..|.+.+..-.+. ..++- +..+ -.+....|+++|..+++ |.+ +.|..|.. -|+.+.+++
T Consensus 237 ~nGr~QiMR~eND----~~Pvv-~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlk 305 (1189)
T KOG2041|consen 237 ANGRMQIMRSEND----PEPVV-VDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLK 305 (1189)
T ss_pred cCceehhhhhcCC----CCCeE-Eecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEe
Confidence 9999887654432 12222 2333 46889999999999998 322 14555554 577777776
Q ss_pred CCCCCCCeEEEEEeeCCcEEE
Q 004924 609 PDKMDLPITYATYSCDGKCIY 629 (723)
Q Consensus 609 ~~~h~~~v~~l~~spdg~~l~ 629 (723)
.+ +..|++++|-..|-.++
T Consensus 306 vp--g~~It~lsWEg~gLriA 324 (1189)
T KOG2041|consen 306 VP--GSCITGLSWEGTGLRIA 324 (1189)
T ss_pred cC--CceeeeeEEcCCceEEE
Confidence 54 67788888866554433
No 275
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.00 E-value=1.2e-07 Score=90.47 Aligned_cols=241 Identities=10% Similarity=0.062 Sum_probs=156.1
Q ss_pred CCEEEEEe-CCcEEEEEcCCCcEE-EEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEE
Q 004924 449 GSHLFSAS-GGKISIFSLETFQTL-ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 524 (723)
Q Consensus 449 ~~~l~s~s-dg~I~vwd~~~~~~~-~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~ 524 (723)
..+||.|+ .|...+|...+.+.. +....+...|+-+.=..+. .+..++.|.++++.++..+.....+....-.+++
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 45788888 899999999865543 3333444444322212222 6778889999999987755433333222233789
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCce
Q 004924 525 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH 603 (723)
Q Consensus 525 l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~ 603 (723)
+.+++|++++++.+....|..|.+......... + ...... ..-.+..|+.....+|+ ..||++.|||++....
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~--~~a~t~---D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-I--YEAPTS---DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeee-e--EecccC---CCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence 999999999999999999999998763221111 1 111111 45568899999888888 5999999999987543
Q ss_pred eEEec---CCCCCCCeEEEEEeeCCc--EEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCC
Q 004924 604 TSQLV---PDKMDLPITYATYSCDGK--CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 678 (723)
Q Consensus 604 ~~~~~---~~~h~~~v~~l~~spdg~--~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 678 (723)
..... .+.|.+.+..+.|++.|. +|...-.-+.+.+.|+++++..+.+.........|....+. ...|+. ++
T Consensus 238 pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~if--gt~f~~-~n 314 (344)
T KOG4532|consen 238 PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIF--GTNFNN-EN 314 (344)
T ss_pred chhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccc--cccccC-CC
Confidence 32221 234799999999998764 55555556899999999998777765443322222223333 666766 45
Q ss_pred CEEEEEECCCcEEEEecCCCc
Q 004924 679 NRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 679 ~~las~s~Dg~v~iWd~~~~~ 699 (723)
.-+.+.+++ .+.=|++.+..
T Consensus 315 ~s~~v~~e~-~~ae~ni~srs 334 (344)
T KOG4532|consen 315 ESNDVKNEL-QGAEYNILSRS 334 (344)
T ss_pred cccccccch-hhheeeccccc
Confidence 545444444 35566665543
No 276
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.00 E-value=2.6e-09 Score=124.01 Aligned_cols=193 Identities=13% Similarity=0.230 Sum_probs=152.8
Q ss_pred CCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEe-CCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEE
Q 004924 438 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 512 (723)
Q Consensus 438 h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~-~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~ 512 (723)
+-..|.++.-+ ..+.++|+ ||.|++|....++.+..++ .....|+.+.|+.+| .+..+..||.+.+|... .++.
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~ 2285 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPY 2285 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccce
Confidence 44556666555 66777888 9999999999998888876 334789999999999 99999999999999977 5666
Q ss_pred EEEcCcCCcEEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E
Q 004924 513 AKLKGHQNRITCLAYSLSLNVLVSSG---ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I 588 (723)
Q Consensus 513 ~~l~~~~~~i~~l~~spdg~~l~s~s---~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s 588 (723)
...+.|....+++.|-. ..+++++ .++.+.+||..-... ... +...|. +.++++++-|..+.+++ |
T Consensus 2286 ~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~--~s~---v~~~H~---~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2286 TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPM--NSL---VHTCHD---GGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcc--cce---eeeecC---CCceEEEEcCcceEEEecC
Confidence 77788988888888865 4556554 468899999754211 111 235676 79999999999999999 5
Q ss_pred cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeec
Q 004924 589 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 653 (723)
Q Consensus 589 ~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 653 (723)
.+|.|++||++..+.++++.. +. ...++++|+..|.|+||++..-.++..+..
T Consensus 2356 r~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred CcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 999999999998888777742 44 567899999999999999998887777753
No 277
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=1.1e-09 Score=118.72 Aligned_cols=336 Identities=14% Similarity=0.131 Sum_probs=204.1
Q ss_pred HHHHHHHHHhhcccccccccCCCCCCCCCccc-cCCCcccccccccccccCCCCCCCcceeeccCCCCCCceeeeCCCcc
Q 004924 250 SRLLSLIKQIMDWWVPYCINVMPNANNETISL-KDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQS 328 (723)
Q Consensus 250 ~rL~~ll~qa~~~q~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~h~~v~s~~~~~~~~~ 328 (723)
--|.+++.|.++.|+..|.+++..++...+.. |.++-++..+.|--+++.+-. ...+ ++.|.+|++-.+..+
T Consensus 1013 ~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~ap~N~t~Rl~--~rel--~~~y~gV~g~~~dr~--- 1085 (1516)
T KOG1832|consen 1013 LSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLEAPLNMTGRLG--TREL--QSFYSGVHGNRRDRQ--- 1085 (1516)
T ss_pred CcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhhcchhhhhccc--chhh--cCcccccccCcccch---
Confidence 35999999999999999998888777555444 666665555533111111000 0000 011222222111111
Q ss_pred cccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcc
Q 004924 329 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 408 (723)
Q Consensus 329 ~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~ 408 (723)
.|.+ ..+-|.. +. .|+..-+|++||-+.++|+.|+..|.|+++++.++..
T Consensus 1086 ----------~IFS-----RFr~w~~-------------fr--d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~ 1135 (1516)
T KOG1832|consen 1086 ----------FIFS-----RFRSWRS-------------FR--DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM 1135 (1516)
T ss_pred ----------hhHh-----hcccchh-------------hh--ccccceeeEEeecCCceEEeeeccceEEEEEccCccc
Confidence 0000 0122322 22 2788999999999999999999999999999885433
Q ss_pred cccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe--C-CcEEEEEcCC-CcEEEEEeCCCCCeE
Q 004924 409 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--G-GKISIFSLET-FQTLATFANPPPIAT 482 (723)
Q Consensus 409 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s--d-g~I~vwd~~~-~~~~~~~~~~~~~v~ 482 (723)
..... +|.++|+-+.-+ |..+.+.+ . --..+|++.+ +...+++.+ -.
T Consensus 1136 -----e~s~n------------------cH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e----d~ 1188 (1516)
T KOG1832|consen 1136 -----EESVN------------------CHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE----DK 1188 (1516)
T ss_pred -----ccccc------------------ccccccccccccCCcceeeeeccccCchHHHhccccccCccccccc----cc
Confidence 21111 799999999988 66655554 3 3678999854 555555543 34
Q ss_pred EEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEE-EcC---cCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeece
Q 004924 483 YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKG---HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 557 (723)
Q Consensus 483 ~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~-l~~---~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~ 557 (723)
++.|+... .-+.|+......+||+.++.++.+ +.+ .+..-++..|+|+...++ .|| .+||++..+.
T Consensus 1189 ~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~a---- 1259 (1516)
T KOG1832|consen 1189 AVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEA---- 1259 (1516)
T ss_pred eeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHH----
Confidence 77887766 445555566789999999987766 332 223347889999887776 355 4799987432
Q ss_pred eeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeC----
Q 004924 558 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK---- 633 (723)
Q Consensus 558 ~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~---- 633 (723)
++.+..- ..-..-.|+|+|..++..++ |||+++.+.++... .-.-+.+.|...|..+++.-.
T Consensus 1260 -Ih~FD~f-----t~~~~G~FHP~g~eVIINSE----IwD~RTF~lLh~VP----~Ldqc~VtFNstG~VmYa~~~~~d~ 1325 (1516)
T KOG1832|consen 1260 -IHRFDQF-----TDYGGGGFHPSGNEVIINSE----IWDMRTFKLLHSVP----SLDQCAVTFNSTGDVMYAMLNIEDV 1325 (1516)
T ss_pred -Hhhhhhh-----eecccccccCCCceEEeech----hhhhHHHHHHhcCc----cccceEEEeccCccchhhhhhhhhh
Confidence 2211111 11123469999998887432 89999988877664 233456788888877665431
Q ss_pred --C-----------CcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEE
Q 004924 634 --S-----------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 684 (723)
Q Consensus 634 --d-----------g~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 684 (723)
| ...+-++....+.+.++.. ... +++++-.|+ ..+++..
T Consensus 1326 ~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v---------~R~--~~Dlct~~~-D~~l~vI 1377 (1516)
T KOG1832|consen 1326 MSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV---------DRC--LLDLCTEPT-DSFLGVI 1377 (1516)
T ss_pred hhhhcccccccchhhhhccccccccccceeeec---------ccc--hhhhhcCCc-cceEEEE
Confidence 0 2234455555555555543 222 336777773 4555544
No 278
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.97 E-value=2.7e-07 Score=92.65 Aligned_cols=225 Identities=17% Similarity=0.129 Sum_probs=141.3
Q ss_pred CCcEEEEEcCCCcEEEEEeCC--CCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEE
Q 004924 457 GGKISIFSLETFQTLATFANP--PPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 534 (723)
Q Consensus 457 dg~I~vwd~~~~~~~~~~~~~--~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l 534 (723)
+|+|..||..+|+.+....-. .....+.....++.+++++.++.+..||..+|+.+..+.. ...+.... ..++..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccccc
Confidence 588999999999999888631 2222222232333777788999999999999998877764 22211111 2245567
Q ss_pred EEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCC
Q 004924 535 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMD 613 (723)
Q Consensus 535 ~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~ 613 (723)
++++.++.++.+|..+|+..........+.. ..........++..+++ ..++.|..+|.++|+.+..+......
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPA-----GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTC-----STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred ccccceeeeEecccCCcceeeeecccccccc-----ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence 7777889999999999876443211100000 11112222223666666 46999999999999998777652211
Q ss_pred --CC------eEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEE
Q 004924 614 --LP------ITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 685 (723)
Q Consensus 614 --~~------v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 685 (723)
.. +..-....++ .++.++.+|.+.-+|..+++.+..... . ... . ...+ .+..+++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~---------~-~~~--~-~~~~-~~~~l~~~~ 219 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKPI---------S-GIY--S-LPSV-DGGTLYVTS 219 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEECS---------S--EC--E-CEEC-CCTEEEEEE
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEecC---------C-Ccc--C-Ccee-eCCEEEEEe
Confidence 11 1122222344 777777788644449999986643321 1 111 2 1334 567888888
Q ss_pred CCCcEEEEecCCCceeee
Q 004924 686 TNGRVHVIEPLESEVEWG 703 (723)
Q Consensus 686 ~Dg~v~iWd~~~~~~~w~ 703 (723)
.++.|..||+.+|+.+|.
T Consensus 220 ~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 220 SDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTTEEEEEETTTTEEEEE
T ss_pred CCCEEEEEECCCCCEEeE
Confidence 999999999999999996
No 279
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=2e-07 Score=97.10 Aligned_cols=272 Identities=9% Similarity=0.086 Sum_probs=169.1
Q ss_pred CCCcccccccCCCCCEEEEEeCC-----------CeEEEEeecccCCCCceeEEecCCCCCCCceE-EEEEeCCCCEEEE
Q 004924 324 DNNQSRESTSLPDADSAVCAKSL-----------EKSVNLKLQLINEPSECRTLLLPDNSFGGRVV-RLIYSHSGDFLVA 391 (723)
Q Consensus 324 ~~~~~~~~~~spdg~~la~~s~d-----------g~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~-~l~fspdg~~las 391 (723)
.|....-.+|||..+||++=+.. ..++|||+.++ ...+.+..+. ....+| -..||.|++|+|-
T Consensus 248 ~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG---~lkrsF~~~~--~~~~~WP~frWS~DdKy~Ar 322 (698)
T KOG2314|consen 248 YHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG---LLKRSFPVIK--SPYLKWPIFRWSHDDKYFAR 322 (698)
T ss_pred cCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc---chhcceeccC--CCccccceEEeccCCceeEE
Confidence 44445556799999999986542 45899999963 2222222211 223333 3689999999988
Q ss_pred EECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe---C---CcEEEE
Q 004924 392 LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---G---GKISIF 463 (723)
Q Consensus 392 ~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s---d---g~I~vw 463 (723)
-.. .+|.||+..+-. +++..+- .-..|....|+ ++.||--. + ..+.+.
T Consensus 323 m~~-~sisIyEtpsf~-------------lld~Ksl----------ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~ 378 (698)
T KOG2314|consen 323 MTG-NSISIYETPSFM-------------LLDKKSL----------KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLM 378 (698)
T ss_pred ecc-ceEEEEecCcee-------------eeccccc----------CCccccCcccCCCcceEEEEcccccCCcceEEEE
Confidence 776 578888865421 2222111 23457777788 66666554 1 357777
Q ss_pred EcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEE----------CCCcEEEEeCCCCcE-EEEEcCcCCcEEEEEEcCCC
Q 004924 464 SLETFQTLATFANPPPIATYFILLPQD-LFAFGF----------DDSSILVHCPCTKKT-KAKLKGHQNRITCLAYSLSL 531 (723)
Q Consensus 464 d~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs----------~dg~I~iwd~~~~~~-~~~l~~~~~~i~~l~~spdg 531 (723)
.+.+++.+++-.-+.-.-..+-|-.+| +|+.-- .-..+.|+.++.... +..+. -...|...+|-|.|
T Consensus 379 evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~g 457 (698)
T KOG2314|consen 379 EVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHG 457 (698)
T ss_pred ecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCC
Confidence 777777777665444333456677777 665321 112355665554432 22222 45678899999999
Q ss_pred CEEEEEeC---CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE----EcCCcEEEEECCCCcee
Q 004924 532 NVLVSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS----IHEGQIDVYEAPTLNHT 604 (723)
Q Consensus 532 ~~l~s~s~---dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~----s~dg~I~vwd~~~~~~~ 604 (723)
+.+++-+. ..++.+|-+.+.. .....+..+.. ...+.+.|+|.|+++++ |..|.+..+|+....+.
T Consensus 458 dkF~vi~g~~~k~tvsfY~~e~~~-~~~~lVk~~dk------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k 530 (698)
T KOG2314|consen 458 DKFAVISGNTVKNTVSFYAVETNI-KKPSLVKELDK------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLK 530 (698)
T ss_pred CeEEEEEccccccceeEEEeecCC-Cchhhhhhhcc------cccceEEEcCCCcEEEEEEecccccceEEEecchhhhh
Confidence 88776553 3578888887421 11112222222 34678999999999986 25789999999743332
Q ss_pred EEecCCCCCCCeEEEEEeeCCcEEEEEeCC
Q 004924 605 SQLVPDKMDLPITYATYSCDGKCIYVSCKS 634 (723)
Q Consensus 605 ~~~~~~~h~~~v~~l~~spdg~~l~sgs~d 634 (723)
.+-.+ . ....+.+.|.|.|+|+++++.-
T Consensus 531 ~~~~~-e-h~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 531 DTASP-E-HFAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred hccCc-c-ccccccceECCCCCEEEEeeeh
Confidence 22211 2 3456789999999999998863
No 280
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=3.5e-07 Score=99.08 Aligned_cols=208 Identities=9% Similarity=0.004 Sum_probs=129.4
Q ss_pred cEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-e-EEEEECC---CcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCE
Q 004924 459 KISIFSLETFQTLATFANPPPIATYFILLPQD-L-FAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 533 (723)
Q Consensus 459 ~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~-l~sgs~d---g~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~ 533 (723)
.|.+-|.+ |...+.+.... ......|+||| . ++..+.+ ..|+++|+.+|+...... ..+......|+|||+.
T Consensus 170 ~l~~~d~d-g~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~ 246 (419)
T PRK04043 170 NIVLADYT-LTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSK 246 (419)
T ss_pred eEEEECCC-CCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCE
Confidence 45554543 33334343333 67789999999 5 6654443 469999998887654443 4555667889999987
Q ss_pred EEEEe-CC--CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcC--C--cEEEEECCCCceeEE
Q 004924 534 LVSSG-AD--AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE--G--QIDVYEAPTLNHTSQ 606 (723)
Q Consensus 534 l~s~s-~d--g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~d--g--~I~vwd~~~~~~~~~ 606 (723)
++... .+ ..|.++|+.++.. .. +.... .......|+|||+.|+...+ + .|+++|+.+++..+.
T Consensus 247 la~~~~~~g~~~Iy~~dl~~g~~---~~---LT~~~----~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 247 LLLTMAPKGQPDIYLYDTNTKTL---TQ---ITNYP----GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred EEEEEccCCCcEEEEEECCCCcE---EE---cccCC----CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 76543 33 4688889877532 11 22111 22335679999998886322 2 799999988776433
Q ss_pred ecCCCCCCCeEEEEEeeCCcEEEEEeCC---------CcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCC
Q 004924 607 LVPDKMDLPITYATYSCDGKCIYVSCKS---------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 677 (723)
Q Consensus 607 ~~~~~h~~~v~~l~~spdg~~l~sgs~d---------g~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d 677 (723)
... ... ...|||||++|+..+.. ..|++.|+.++.. ..+... . ... ...|+| |
T Consensus 317 t~~---g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~--------~-~~~--~p~~SP-D 378 (419)
T PRK04043 317 VFH---GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN--------G-VNQ--FPRFSS-D 378 (419)
T ss_pred ccC---CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC--------C-CcC--CeEECC-C
Confidence 221 111 24899999998866543 3688889988864 333321 1 111 578999 8
Q ss_pred CCEEEEEECC-C--cEEEEecCC
Q 004924 678 PNRIALGLTN-G--RVHVIEPLE 697 (723)
Q Consensus 678 ~~~las~s~D-g--~v~iWd~~~ 697 (723)
|+.++..+.+ + .+.+.++..
T Consensus 379 G~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 379 GGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCEEEEEEccCCcEEEEEEecCC
Confidence 8887766643 2 355666643
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.95 E-value=6e-07 Score=107.83 Aligned_cols=257 Identities=10% Similarity=-0.005 Sum_probs=156.0
Q ss_pred EEEEEeCC-CCEEEEEECCCcEEEEeccCCcccccccceeeee-EEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEE
Q 004924 378 VRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMES-QLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF 453 (723)
Q Consensus 378 ~~l~fspd-g~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~ 453 (723)
..++++++ |..+++-+.++.|++||...... ..+.. .......|..-. .+-.....+++. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i------~~ig~~g~~G~~dG~~~~-----a~f~~P~GIavd~~gn~LY 639 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFI------VQIGSTGEEGLRDGSFED-----ATFNRPQGLAYNAKKNLLY 639 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEE------EEEccCCCcCCCCCchhc-----cccCCCcEEEEeCCCCEEE
Confidence 46888875 55666666678899988653211 00000 000000010000 122335678887 66666
Q ss_pred EEe--CCcEEEEEcCCCcEEEEEeCC-----------------CCCeEEEEEcCC-C-eEEEEECCCcEEEEeCCCCcEE
Q 004924 454 SAS--GGKISIFSLETFQTLATFANP-----------------PPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTK 512 (723)
Q Consensus 454 s~s--dg~I~vwd~~~~~~~~~~~~~-----------------~~~v~~l~~~p~-~-~l~sgs~dg~I~iwd~~~~~~~ 512 (723)
++. ++.|+++|..++. +.++.+. -...+.++++|+ + .+++.+.++.|++||..++...
T Consensus 640 VaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~ 718 (1057)
T PLN02919 640 VADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR 718 (1057)
T ss_pred EEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE
Confidence 665 5789999987654 3333210 112357899995 5 6677778889999998876543
Q ss_pred EEEcCc---------------CCcEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceeece--------eeeeeecCCC-
Q 004924 513 AKLKGH---------------QNRITCLAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSK--------FLHSFQTGLV- 567 (723)
Q Consensus 513 ~~l~~~---------------~~~i~~l~~spdg~~l-~s~s~dg~I~vwd~~~~~~~~~~--------~l~~~~~~~~- 567 (723)
.+.+. -.....++++|+|..| ++-+.++.|++||+.++...... .+..+.....
T Consensus 719 -~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~ 797 (1057)
T PLN02919 719 -VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGV 797 (1057)
T ss_pred -EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCc
Confidence 22211 1234579999999855 45556789999999875321000 0000000000
Q ss_pred ---CCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCC-----------CCCCCeEEEEEeeCCcEEEEEe
Q 004924 568 ---PETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD-----------KMDLPITYATYSCDGKCIYVSC 632 (723)
Q Consensus 568 ---~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~-----------~h~~~v~~l~~spdg~~l~sgs 632 (723)
..-.....++++++|..+++ ..+++|++||..++......... .+......++++++|+.+++-+
T Consensus 798 g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt 877 (1057)
T PLN02919 798 GSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT 877 (1057)
T ss_pred hhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC
Confidence 00023468999999987776 58899999999877654322110 0123577899999999888888
Q ss_pred CCCcEEEEECCCCcE
Q 004924 633 KSGHVKVFDTSTLEL 647 (723)
Q Consensus 633 ~dg~I~iwd~~~~~~ 647 (723)
.++.|++||+.+++.
T Consensus 878 ~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 878 NNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCEEEEEECCCCcc
Confidence 999999999998865
No 282
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.93 E-value=5.2e-08 Score=95.92 Aligned_cols=239 Identities=13% Similarity=0.139 Sum_probs=161.7
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEc-CCCcEEEEEe-CCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCC---
Q 004924 437 DPKDSISCFALR--GSHLFSAS-GGKISIFSL-ETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPC--- 507 (723)
Q Consensus 437 ~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~-~~~~~~~~~~-~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~--- 507 (723)
||.+.|++...- ..-+++.+ |.+++||-- +.++.-..+. .-..+++++.+.++. .|++|-.+|++.-+.+.
T Consensus 22 G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf 101 (404)
T KOG1409|consen 22 GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF 101 (404)
T ss_pred CchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh
Confidence 677777765554 66788888 999999954 4454443332 335678899999999 99999999999988654
Q ss_pred -CCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEE
Q 004924 508 -TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 586 (723)
Q Consensus 508 -~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~ 586 (723)
.....+....|...+..+.|+-...++++.+.|..+.---.+.+..+....+.. ..+++.+.-. +..
T Consensus 102 nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~----------~~t~~~~d~~--~~f 169 (404)
T KOG1409|consen 102 NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET----------PASALQFDAL--YAF 169 (404)
T ss_pred hhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec----------cCCCCceeeE--EEE
Confidence 345556677799999999999989999999999887532333332222211110 0111111111 222
Q ss_pred EE-cCCcEEEEECC--CCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCcc
Q 004924 587 SI-HEGQIDVYEAP--TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS 663 (723)
Q Consensus 587 ~s-~dg~I~vwd~~--~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~ 663 (723)
.| ..|.|..-.+. .-.++.++. +|...+.+++|.|....|.+|..|..+.+||+...+-..... .|| .
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~--~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el------~gh-~ 240 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFN--GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL------QGH-N 240 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEc--CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee------ccc-h
Confidence 33 44555544433 344555665 579999999999999999999999999999998665443222 143 3
Q ss_pred CccceEEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 664 LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 664 ~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
+.+. .+.+-+ --..+.+++.||.|-+|+.+...
T Consensus 241 ~kV~--~l~~~~-~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 241 DKVQ--ALSYAQ-HTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred hhhh--hhhhhh-hheeeeeccCCCeEEEEecccee
Confidence 3454 565555 45789999999999999987643
No 283
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.92 E-value=3.8e-06 Score=99.11 Aligned_cols=295 Identities=12% Similarity=0.103 Sum_probs=182.3
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 450 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 450 (723)
..+.|.++.|-++...++.+..+|.|.+....... +...-+++. .-...|.+++|| ++
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~---------------~~~~~E~VG-----~vd~GI~a~~WSPD~E 133 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDP---------------DEDEIEIVG-----SVDSGILAASWSPDEE 133 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCC---------------CCceeEEEE-----EEcCcEEEEEECCCcC
Confidence 45789999999999999999999999888322100 000001111 246789999999 77
Q ss_pred EEEEEe-CCcEEEEEcC---------------C--------CcEEEEEeC------------------------CCCCeE
Q 004924 451 HLFSAS-GGKISIFSLE---------------T--------FQTLATFAN------------------------PPPIAT 482 (723)
Q Consensus 451 ~l~s~s-dg~I~vwd~~---------------~--------~~~~~~~~~------------------------~~~~v~ 482 (723)
.++..+ ++++.+.+-. . |+.-..|.| ....-.
T Consensus 134 lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~ 213 (928)
T PF04762_consen 134 LLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRV 213 (928)
T ss_pred EEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCce
Confidence 777777 7877765321 0 111011100 122345
Q ss_pred EEEEcCCC-eEEEEEC---C---CcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCc
Q 004924 483 YFILLPQD-LFAFGFD---D---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAVGWK 552 (723)
Q Consensus 483 ~l~~~p~~-~l~sgs~---d---g~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~---dg~I~vwd~~~~~ 552 (723)
.++|..|| ++|+.+. . ..++||+-+ |.....-+.-.+--.+++|.|.|+++++... ...|.+|.-++ .
T Consensus 214 ~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG-L 291 (928)
T PF04762_consen 214 RISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNG-L 291 (928)
T ss_pred EEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC-c
Confidence 78999999 8887764 2 479999954 7655544444444557899999999998765 34566676543 3
Q ss_pred eeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCcee--EEecCCCCCCCeEEEEEeeCC-cEEE
Q 004924 553 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHT--SQLVPDKMDLPITYATYSCDG-KCIY 629 (723)
Q Consensus 553 ~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~--~~~~~~~h~~~v~~l~~spdg-~~l~ 629 (723)
......+. . .... ..|..+.|++|+..||+.....|.+|-..+..-. +.+... ....+..+.|+|.. ..|.
T Consensus 292 rhgeF~l~-~-~~~~---~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~-~~~~~~~~~Wdpe~p~~L~ 365 (928)
T PF04762_consen 292 RHGEFTLR-F-DPEE---EKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFS-SSESVNFVKWDPEKPLRLH 365 (928)
T ss_pred EeeeEecC-C-CCCC---ceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEcc-CCCCCCceEECCCCCCEEE
Confidence 33333333 1 1122 6799999999999999965555999998775432 233221 13445559999854 4567
Q ss_pred EEeCCCcEEEEEC----CCCc--------EEEEeecccc---------cCCC--C----ccCccceEEEEEecCCCCEEE
Q 004924 630 VSCKSGHVKVFDT----STLE--------LRCQINLTAY---------AQPG--T----ISLELYPLVIAAHPLEPNRIA 682 (723)
Q Consensus 630 sgs~dg~I~iwd~----~~~~--------~~~~~~~~~~---------~~~g--~----~~~~v~~~~v~~sp~d~~~la 682 (723)
..+.+|.+..++. ..+. .+..+.+... +|+- + -... +.+++|++ ++..+|
T Consensus 366 v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~--v~~vaf~~-~~~~~a 442 (928)
T PF04762_consen 366 VLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSP--VNDVAFSP-SNSRFA 442 (928)
T ss_pred EEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCC--cEEEEEeC-CCCeEE
Confidence 7776677655443 2221 2222222111 1110 0 0122 55999999 667799
Q ss_pred EEECCCcEEEEecCCC
Q 004924 683 LGLTNGRVHVIEPLES 698 (723)
Q Consensus 683 s~s~Dg~v~iWd~~~~ 698 (723)
+...||+|.+|.....
T Consensus 443 vl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 443 VLTSDGSLSIYEWDLK 458 (928)
T ss_pred EEECCCCEEEEEecCC
Confidence 9999999999997554
No 284
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=1.1e-08 Score=105.93 Aligned_cols=283 Identities=14% Similarity=0.109 Sum_probs=175.0
Q ss_pred CCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-C
Q 004924 371 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G 449 (723)
Q Consensus 371 ~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~ 449 (723)
.||+..|..++--.+.+-+++++.|.+|++|.+... |.... +..+.-++. .|+.+|.++.|- +
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~E----gD~~~----------tsaCQfTY~--aHkk~i~~igfL~~ 795 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPE----GDEIG----------TSACQFTYQ--AHKKPIHDIGFLAD 795 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccc----cCccc----------cceeeeEhh--hccCcccceeeeec
Confidence 459999999887777778999999999999998742 22211 111111111 699999999998 4
Q ss_pred CEEEEEeCCcEEEEEcCCCcEEEEEe--CCCCCeEEEEEcCC--C--eEEEEECCCcEEEEeCCCCcEEEEEcC-----c
Q 004924 450 SHLFSASGGKISIFSLETFQTLATFA--NPPPIATYFILLPQ--D--LFAFGFDDSSILVHCPCTKKTKAKLKG-----H 518 (723)
Q Consensus 450 ~~l~s~sdg~I~vwd~~~~~~~~~~~--~~~~~v~~l~~~p~--~--~l~sgs~dg~I~iwd~~~~~~~~~l~~-----~ 518 (723)
..-++.+||.|.+||.-.|+.+..+. ...+.+..+..-++ . .++.++...+|+++|.+.++....++. .
T Consensus 796 lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P 875 (1034)
T KOG4190|consen 796 LRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP 875 (1034)
T ss_pred cceeeeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCC
Confidence 43444449999999998777766443 22233334444443 3 445557888999999998877766643 4
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEE-E
Q 004924 519 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDV-Y 596 (723)
Q Consensus 519 ~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~v-w 596 (723)
...+.+++..+.|++++.+-..|.|.+.|.++|..+...... . .....++ .|..+.++. ..|.++.| |
T Consensus 876 na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm---e------cdllqla-apsdq~L~~saldHslaVnW 945 (1034)
T KOG4190|consen 876 NALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM---E------CDLLQLA-APSDQALAQSALDHSLAVNW 945 (1034)
T ss_pred chheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc---c------chhhhhc-CchhHHHHhhcccceeEeee
Confidence 466889999999999999999999999999998543321111 0 1122222 344566665 47888888 8
Q ss_pred ECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCC----cEEEEeecccccCCCCccCccceEEEE
Q 004924 597 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL----ELRCQINLTAYAQPGTISLELYPLVIA 672 (723)
Q Consensus 597 d~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~----~~~~~~~~~~~~~~g~~~~~v~~~~v~ 672 (723)
-.-.|....+.+++. .+..-+ -.-|.-|+++...+.+.+|.-... ..+..+....+ .+. .++++
T Consensus 946 haldgimh~q~kppp--epahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f------~G~--lTala 1013 (1034)
T KOG4190|consen 946 HALDGIMHLQDKPPP--EPAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEF------PGT--LTALA 1013 (1034)
T ss_pred hhcCCeeeeccCCCC--cchhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhcccccccc------CCc--cceee
Confidence 876666554444321 111111 123556777766666777742211 11112211111 112 34777
Q ss_pred EecCCCCEEEEEECCCcEEE
Q 004924 673 AHPLEPNRIALGLTNGRVHV 692 (723)
Q Consensus 673 ~sp~d~~~las~s~Dg~v~i 692 (723)
--|-+ .-+..|...|.|.+
T Consensus 1014 ~LPLN-~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1014 PLPLN-CAFLAGNEHGAIAL 1032 (1034)
T ss_pred ecccc-chhhccCCCCceee
Confidence 77733 44555667777764
No 285
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.87 E-value=1.1e-07 Score=91.73 Aligned_cols=237 Identities=11% Similarity=-0.044 Sum_probs=147.8
Q ss_pred EEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeee
Q 004924 339 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNME 418 (723)
Q Consensus 339 ~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~ 418 (723)
.++-+..+|.|.++..........++.+.-.. .......++.|++.|..++++-.+|.+.+-+...... -+
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~k-i~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~l--------e~ 157 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKK-ISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVL--------EK 157 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhh-hhheeeeEEEeeccCceEEEEcCCCcEEEEecceeee--------ee
Confidence 46777778889888876422112211111000 0111346788999999999998899887433221000 00
Q ss_pred eEEEecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcC-CCcEEEE-EeCCCCCeEEEEEcCCC--
Q 004924 419 SQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLE-TFQTLAT-FANPPPIATYFILLPQD-- 490 (723)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~-~~~~~~~-~~~~~~~v~~l~~~p~~-- 490 (723)
+..|. .|.-..+...|+ .+.+.+|+ |+.+..||++ .++.+.. .+.|...|.++.-+|..
T Consensus 158 vq~wk-------------~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~ 224 (339)
T KOG0280|consen 158 VQTWK-------------VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPT 224 (339)
T ss_pred ccccc-------------ccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCc
Confidence 11132 689999999999 67899999 8999999998 4445444 45788899999888765
Q ss_pred eEEEEECCCcEEEEeCCC-CcEEEEEcCcCCcEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCC
Q 004924 491 LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP 568 (723)
Q Consensus 491 ~l~sgs~dg~I~iwd~~~-~~~~~~l~~~~~~i~~l~~spdg~-~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~ 568 (723)
.+++|+.|-.|++||.++ ++++..-. -.+.|..+.++|.-. .++.++.-.-.+|-+...+.......+. ....|.
T Consensus 225 ~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~-s~~~hd- 301 (339)
T KOG0280|consen 225 YIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLP-SDKIHD- 301 (339)
T ss_pred eEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeee-cccccc-
Confidence 999999999999999884 56654433 347899999999432 3444445555677777654322111111 333343
Q ss_pred CCCCeEEEEEccCCCEEEEE--cCCcEE-EEECCCCc
Q 004924 569 ETTIVNHIQFHPDQIHLLSI--HEGQID-VYEAPTLN 602 (723)
Q Consensus 569 ~~~~v~~l~~spdg~~l~~s--~dg~I~-vwd~~~~~ 602 (723)
+-...-.|..-...++++ .|+.++ +|-.-++.
T Consensus 302 --Sl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 302 --SLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred --ceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 334444443333567773 777755 77544443
No 286
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.85 E-value=2.3e-08 Score=107.00 Aligned_cols=281 Identities=13% Similarity=0.103 Sum_probs=179.4
Q ss_pred CCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCC--CCeEEEEEe---
Q 004924 374 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK--DSISCFALR--- 448 (723)
Q Consensus 374 ~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~v~~s--- 448 (723)
.+.+..+..+|.|+-+|.++.-|.. +-|+..... +-.| + .|. -.|-.+.|+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~----------ppr~-------l------~h~tpw~vad~qws~h~ 79 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFT----------PPRW-------L------HHITPWQVADVQWSPHP 79 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeE-EEeccCCCC----------Ccee-------e------eccCcchhcceecccCC
Confidence 5678889999999999999887654 334332111 0011 1 122 235566677
Q ss_pred --CCEEEEEeCCcEEEEEcCC---CcEEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCC-cEEEEEcCcCC
Q 004924 449 --GSHLFSASGGKISIFSLET---FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQN 520 (723)
Q Consensus 449 --~~~l~s~sdg~I~vwd~~~---~~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~-~~~~~l~~~~~ 520 (723)
..++++.+...-.+|++.. ......+.+|...|+.+.|+|+. .+++++.|..+..||+++. .++..+.....
T Consensus 80 a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s 159 (1081)
T KOG0309|consen 80 AKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS 159 (1081)
T ss_pred CCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccc
Confidence 4456666666677888743 23334456999999999999998 9999999999999999874 45556655556
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCC-CEEEE-EcCCcEEEEEC
Q 004924 521 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEA 598 (723)
Q Consensus 521 ~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg-~~l~~-s~dg~I~vwd~ 598 (723)
.-..++|+.....+...+..+.|++||.+.|. .++..+ .+|. ..|..+.|..-- ..+.+ +.|++|+.||.
T Consensus 160 ~asqVkwnyk~p~vlasshg~~i~vwd~r~gs----~pl~s~-K~~v---s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y 231 (1081)
T KOG0309|consen 160 AASQVKWNYKDPNVLASSHGNDIFVWDLRKGS----TPLCSL-KGHV---SSVNSIDFNRFKYSEIMSSSNDGTVKFWDY 231 (1081)
T ss_pred cCceeeecccCcchhhhccCCceEEEeccCCC----cceEEe-cccc---eeeehHHHhhhhhhhhcccCCCCceeeecc
Confidence 67889998755555566677889999999863 445533 3355 678888887532 23344 69999999998
Q ss_pred CCCceeEEecCCCCCCCeEEEEEeeCCc--EEEEEeCCCcEEEEECCC----------CcEEEEeecccccCCCCccCcc
Q 004924 599 PTLNHTSQLVPDKMDLPITYATYSCDGK--CIYVSCKSGHVKVFDTST----------LELRCQINLTAYAQPGTISLEL 666 (723)
Q Consensus 599 ~~~~~~~~~~~~~h~~~v~~l~~spdg~--~l~sgs~dg~I~iwd~~~----------~~~~~~~~~~~~~~~g~~~~~v 666 (723)
........... ....+|+..++-|-|. ++.---.+..+.+++.++ .+.+.++. ||.+ .|
T Consensus 232 ~kSt~e~~~~v-tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~-------GH~D-~V 302 (1081)
T KOG0309|consen 232 SKSTTESKRTV-TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFV-------GHDD-VV 302 (1081)
T ss_pred cccccccceec-cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeec-------Ccch-HH
Confidence 75433222211 1267888888888554 333221223444444333 23455555 3322 22
Q ss_pred ceEEEEEecC---------CCCEEEEEECCCcEEEEecCC
Q 004924 667 YPLVIAAHPL---------EPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 667 ~~~~v~~sp~---------d~~~las~s~Dg~v~iWd~~~ 697 (723)
- ...|-.. ..-.|+|-|.|.++++|-+.+
T Consensus 303 ~--eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 303 L--EFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred H--HHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 1 3333210 123799999999999999865
No 287
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.85 E-value=2.2e-06 Score=93.10 Aligned_cols=287 Identities=9% Similarity=0.000 Sum_probs=167.3
Q ss_pred CCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCe-EEEEEeCCEEEEEe-CCcEEEE
Q 004924 386 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI-SCFALRGSHLFSAS-GGKISIF 463 (723)
Q Consensus 386 g~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-~~v~~s~~~l~s~s-dg~I~vw 463 (723)
+..++.++.+|.+.-+|..+++. +|......... .....+...+ ..+...++.++.++ +|.+..+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~------------~W~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~al 135 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKE------------IWSVDLSEKDG-WFSKNKSALLSGGVTVAGGKVYIGSEKGQVYAL 135 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcE------------eeEEcCCCccc-ccccccccccccccEEECCEEEEEcCCCEEEEE
Confidence 55677777788888888764432 35543221000 0000000011 12333466666676 8999999
Q ss_pred EcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEE-EEEcC--CCCEEEEEeCC
Q 004924 464 SLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC-LAYSL--SLNVLVSSGAD 540 (723)
Q Consensus 464 d~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~-l~~sp--dg~~l~s~s~d 540 (723)
|.++|+.+...........+.... ++.+++++.++.+.-+|..+|+.+.........+.. ..-+| .+..++.++.+
T Consensus 136 d~~tG~~~W~~~~~~~~~ssP~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~ 214 (394)
T PRK11138 136 NAEDGEVAWQTKVAGEALSRPVVS-DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN 214 (394)
T ss_pred ECCCCCCcccccCCCceecCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC
Confidence 999999888776433211111221 346777888999999999999988776532111100 00111 12357778889
Q ss_pred CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEcc---CCCEEEEEcCCcEEEEECCCCceeEEecCCCCCCCeE
Q 004924 541 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---DQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPIT 617 (723)
Q Consensus 541 g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~sp---dg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~ 617 (723)
|.+..+|..+|+......+......+.. .....+.-+| ++..++++.+|.++.+|..+|+.+-..... ...
T Consensus 215 g~v~a~d~~~G~~~W~~~~~~~~~~~~~--~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~----~~~ 288 (394)
T PRK11138 215 GRVSAVLMEQGQLIWQQRISQPTGATEI--DRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG----SVN 288 (394)
T ss_pred CEEEEEEccCChhhheeccccCCCccch--hcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC----Ccc
Confidence 9999999998865433222200000000 0011111122 344444478899999999999876554321 111
Q ss_pred EEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCC
Q 004924 618 YATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 618 ~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~ 697 (723)
.+ ..++..++.++.+|.++.+|..+|+.+....... ..... +... .+..+..++.||.|++.|..+
T Consensus 289 ~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-------~~~~~--sp~v---~~g~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 289 DF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLL-------HRLLT--APVL---YNGYLVVGDSEGYLHWINRED 354 (394)
T ss_pred Cc--EEECCEEEEEcCCCeEEEEECCCCcEEEcccccC-------CCccc--CCEE---ECCEEEEEeCCCEEEEEECCC
Confidence 22 2356778888899999999999998776543110 01111 1222 235788889999999999999
Q ss_pred CceeeecCC
Q 004924 698 SEVEWGKLP 706 (723)
Q Consensus 698 ~~~~w~~~~ 706 (723)
|+..|...-
T Consensus 355 G~~~~~~~~ 363 (394)
T PRK11138 355 GRFVAQQKV 363 (394)
T ss_pred CCEEEEEEc
Confidence 999998743
No 288
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.81 E-value=7.9e-06 Score=88.72 Aligned_cols=258 Identities=9% Similarity=-0.017 Sum_probs=154.1
Q ss_pred CCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeE-EEEEeCCEEEEEe-CCcEEE
Q 004924 385 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFSAS-GGKISI 462 (723)
Q Consensus 385 dg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~s~~~l~s~s-dg~I~v 462 (723)
++..++.++.+|.+..+|..+++. +|....+ ..+. +....+..++.+. +|.+.-
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~------------~W~~~~~------------~~~~ssP~v~~~~v~v~~~~g~l~a 174 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEV------------AWQTKVA------------GEALSRPVVSDGLVLVHTSNGMLQA 174 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCC------------cccccCC------------CceecCCEEECCEEEEECCCCEEEE
Confidence 345677788889998888765433 2543321 1111 1122355666666 899999
Q ss_pred EEcCCCcEEEEEeCCCCCe-----EEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEcCcC----C---cEEEEEEcC-
Q 004924 463 FSLETFQTLATFANPPPIA-----TYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ----N---RITCLAYSL- 529 (723)
Q Consensus 463 wd~~~~~~~~~~~~~~~~v-----~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~~----~---~i~~l~~sp- 529 (723)
+|..+|+.+..+....... .+.... ++.++.++.+|.+..+|..+|+.+....... . ....+..+|
T Consensus 175 ld~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~ 253 (394)
T PRK11138 175 LNESDGAVKWTVNLDVPSLTLRGESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV 253 (394)
T ss_pred EEccCCCEeeeecCCCCcccccCCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcE
Confidence 9999999988876332111 011111 2356677889999999999998765543110 0 011111222
Q ss_pred -CCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEe
Q 004924 530 -SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 607 (723)
Q Consensus 530 -dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~ 607 (723)
.+..++.++.+|.+..+|..+|+......+. ....+.. ++..++. +.+|.+..+|..+|+.+-..
T Consensus 254 v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-----------~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 254 VVGGVVYALAYNGNLVALDLRSGQIVWKREYG-----------SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQ 320 (394)
T ss_pred EECCEEEEEEcCCeEEEEECCCCCEEEeecCC-----------CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence 2456777888999999999998654332211 1112222 2344444 68899999999999875443
Q ss_pred cCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECC
Q 004924 608 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 687 (723)
Q Consensus 608 ~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D 687 (723)
.... .....+... .+.+|+.++.||.|++.|..+|+.+...... ...+.. .... .+..|..++.|
T Consensus 321 ~~~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~--------~~~~~s-~P~~---~~~~l~v~t~~ 385 (394)
T PRK11138 321 SDLL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVD--------SSGFLS-EPVV---ADDKLLIQARD 385 (394)
T ss_pred cccC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC--------CCccee-CCEE---ECCEEEEEeCC
Confidence 2111 111222222 2567888999999999999999988876531 111221 1122 13478888999
Q ss_pred CcEEEEec
Q 004924 688 GRVHVIEP 695 (723)
Q Consensus 688 g~v~iWd~ 695 (723)
|.|+.+++
T Consensus 386 G~l~~~~~ 393 (394)
T PRK11138 386 GTVYAITR 393 (394)
T ss_pred ceEEEEeC
Confidence 99988765
No 289
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.81 E-value=5.4e-08 Score=104.26 Aligned_cols=284 Identities=11% Similarity=0.081 Sum_probs=181.1
Q ss_pred CCcccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCC--CEEEEEECCCcEEEEe
Q 004924 325 NNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG--DFLVALTQTATHKLWK 402 (723)
Q Consensus 325 ~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg--~~las~s~dg~i~iWd 402 (723)
.+...+...+|.|+-+|.|+.-|- .+-|+.. +...-.... +...-.|-.+.|||.. .+-+.........+|+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~---p~~ppr~l~--h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwn 97 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDD---PFTPPRWLH--HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWN 97 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccC---CCCCceeee--ccCcchhcceecccCCCCceeEEecCcchhhhhh
Confidence 333445557888999999987664 4555554 222222210 0013456778888753 3334444444455888
Q ss_pred ccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCC-cEEEEEeCC
Q 004924 403 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETF-QTLATFANP 477 (723)
Q Consensus 403 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~~~-~~~~~~~~~ 477 (723)
+.... ...+...+. +|..+|+.+.|. ...+++++ |..+..||+.+- ..+..+..-
T Consensus 98 lA~ss-------------------~~aIef~lh-ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w 157 (1081)
T KOG0309|consen 98 LAKSS-------------------SNAIEFVLH-GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW 157 (1081)
T ss_pred hhcCC-------------------ccceEEEEe-cCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc
Confidence 65311 111111111 699999999999 66899999 999999999864 344444444
Q ss_pred CCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCC-cEEEEEcCcCCcEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCcee
Q 004924 478 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKL 554 (723)
Q Consensus 478 ~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~-~~~~~l~~~~~~i~~l~~spd-g~~l~s~s~dg~I~vwd~~~~~~~ 554 (723)
....+.++|+-.. .+.+.+..+.|++||.+.| .++..+++|...|+.+.|+.- ...+.+++.||+|+.||.......
T Consensus 158 ~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e 237 (1081)
T KOG0309|consen 158 RSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE 237 (1081)
T ss_pred cccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence 4556688998877 7777788889999998875 677889999999999998763 346788999999999998763221
Q ss_pred eceeeeeeecCCCCCCCCeEEEEEccCCCEEEE--E-cCCcEEE---------EECCC-CceeEEecCCCCCCCeEEEEE
Q 004924 555 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-HEGQIDV---------YEAPT-LNHTSQLVPDKMDLPITYATY 621 (723)
Q Consensus 555 ~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~--s-~dg~I~v---------wd~~~-~~~~~~~~~~~h~~~v~~l~~ 621 (723)
.. .++... .+|..-.+.|-|.-.+. . .+..+.+ |+..+ .+++++|. +|...|...-|
T Consensus 238 ~~---~~vtt~-----~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~--GH~D~V~eFlW 307 (1081)
T KOG0309|consen 238 SK---RTVTTN-----FPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFV--GHDDVVLEFLW 307 (1081)
T ss_pred cc---eecccc-----CcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeec--CcchHHHHHhh
Confidence 11 111111 45666667775544333 1 2223333 33332 35677776 46766666555
Q ss_pred eeC----------CcEEEEEeCCCcEEEEECCC
Q 004924 622 SCD----------GKCIYVSCKSGHVKVFDTST 644 (723)
Q Consensus 622 spd----------g~~l~sgs~dg~I~iwd~~~ 644 (723)
-.. .-.|++-+.|..+++|-+.+
T Consensus 308 R~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 308 RKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred hhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 421 12699999999999998764
No 290
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.76 E-value=1.3e-07 Score=91.79 Aligned_cols=261 Identities=13% Similarity=0.124 Sum_probs=161.5
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe----
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---- 448 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---- 448 (723)
..+.|+++.|...|.||++|...|.|.++.-....--.-+....+. -.+++-. .++.+ .-...|..+.|.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQ--she~EFD-YLkSl---eieEKin~I~w~~~t~ 98 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQ--SHELEFD-YLKSL---EIEEKINAIEWFDDTG 98 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhc--ccccchh-hhhhc---cHHHHhhheeeecCCC
Confidence 4678999999999999999999999999875432100000000000 0000000 00000 124567888887
Q ss_pred -CCEEEEEeCCcEEEEEcCCCc-------------------E-----------------------EEEE-eCCCCCeEEE
Q 004924 449 -GSHLFSASGGKISIFSLETFQ-------------------T-----------------------LATF-ANPPPIATYF 484 (723)
Q Consensus 449 -~~~l~s~sdg~I~vwd~~~~~-------------------~-----------------------~~~~-~~~~~~v~~l 484 (723)
..+|+++.|.+|++|.+.... . .+.+ ..|.-.+.++
T Consensus 99 r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSi 178 (460)
T COG5170 99 RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSI 178 (460)
T ss_pred cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeee
Confidence 346777779999999874320 0 0111 2455567888
Q ss_pred EEcCCC-eEEEEECCCcEEEEeCCCCcE---EEEEcCc-----CCcEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCce-
Q 004924 485 ILLPQD-LFAFGFDDSSILVHCPCTKKT---KAKLKGH-----QNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKK- 553 (723)
Q Consensus 485 ~~~p~~-~l~sgs~dg~I~iwd~~~~~~---~~~l~~~-----~~~i~~l~~spd-g~~l~s~s~dg~I~vwd~~~~~~- 553 (723)
.++.|. .++++ .|-.|.+|++..... +-.++.| ...|++..|+|. ...+...+..|.|++-|++....
T Consensus 179 S~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 179 SFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred eecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence 888888 66554 577899998764322 2223333 246888899994 45677778899999999984211
Q ss_pred eeceeee---------eeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCC-CceeEEecCCC----------CC
Q 004924 554 LCSKFLH---------SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT-LNHTSQLVPDK----------MD 613 (723)
Q Consensus 554 ~~~~~l~---------~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~-~~~~~~~~~~~----------h~ 613 (723)
.....+. .+..+- ...|..+.|+++|+++++-.--++++||.+. ..++.++..+. ..
T Consensus 258 dn~~klfe~~~D~v~~~ff~ei---vsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEn 334 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEEI---VSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYEN 334 (460)
T ss_pred cCchhhhhhccCcccchhHHHH---hhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhc
Confidence 0000000 011111 2578899999999999987678999999975 34565553211 02
Q ss_pred CCe---EEEEEeeCCcEEEEEeCCCcEEEEECC
Q 004924 614 LPI---TYATYSCDGKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 614 ~~v---~~l~~spdg~~l~sgs~dg~I~iwd~~ 643 (723)
..| ..+.||.|.+.+++|+..+..-+|-..
T Consensus 335 DaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 335 DAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred cceeeeEEEEecCCcccccccccccceeeeccc
Confidence 223 357888899999999988777777643
No 291
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.75 E-value=3.6e-05 Score=77.75 Aligned_cols=213 Identities=19% Similarity=0.140 Sum_probs=133.8
Q ss_pred EEEEe--CCEEEEEe--CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEc-CCCeEEEEECCCcEEEEeCCCCcEEEEEcC-
Q 004924 444 CFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILL-PQDLFAFGFDDSSILVHCPCTKKTKAKLKG- 517 (723)
Q Consensus 444 ~v~~s--~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~-p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~- 517 (723)
++.|. .+.|+... .+.|..|+..+++... +.... ...+++. +++.++.+..++ +.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 34555 33444444 7899999998775533 33222 5677777 666666666544 55569988865443332
Q ss_pred ----cCCcEEEEEEcCCCCEEEEEeCC--------CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEE
Q 004924 518 ----HQNRITCLAYSLSLNVLVSSGAD--------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 585 (723)
Q Consensus 518 ----~~~~i~~l~~spdg~~l~s~s~d--------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l 585 (723)
.....+++++.|+|+..++.... |.|..++.. ++. .. +..+- ...+.++|+|+++.|
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~---~~---~~~~~----~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV---TV---VADGL----GFPNGIAFSPDGKTL 148 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE---EE---EEEEE----SSEEEEEEETTSSEE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE---EE---EecCc----ccccceEECCcchhe
Confidence 34678899999999977765543 457667766 321 11 11111 467899999999988
Q ss_pred EEE--cCCcEEEEECCCCce----eEEe-cCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccC
Q 004924 586 LSI--HEGQIDVYEAPTLNH----TSQL-VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ 658 (723)
Q Consensus 586 ~~s--~dg~I~vwd~~~~~~----~~~~-~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 658 (723)
+++ ..+.|..+++..... ...+ ......+..-.+++..+|++.++....+.|.+++.. |+.+..+....
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~--- 224 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV--- 224 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS---
T ss_pred eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC---
Confidence 763 677899999853221 1122 111112347889999999988888888999999988 88888776421
Q ss_pred CCCccCccceEEEEEe-cCCCCEEEE
Q 004924 659 PGTISLELYPLVIAAH-PLEPNRIAL 683 (723)
Q Consensus 659 ~g~~~~~v~~~~v~~s-p~d~~~las 683 (723)
. .+++++|. | +.+.|..
T Consensus 225 ----~---~~t~~~fgg~-~~~~L~v 242 (246)
T PF08450_consen 225 ----P---RPTNCAFGGP-DGKTLYV 242 (246)
T ss_dssp ----S---SEEEEEEEST-TSSEEEE
T ss_pred ----C---CEEEEEEECC-CCCEEEE
Confidence 1 36689995 5 5555443
No 292
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.74 E-value=1.7e-06 Score=82.67 Aligned_cols=234 Identities=8% Similarity=-0.062 Sum_probs=145.6
Q ss_pred CCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEE---EeCCEEEEEe-CCcE
Q 004924 385 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA---LRGSHLFSAS-GGKI 460 (723)
Q Consensus 385 dg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~---~s~~~l~s~s-dg~I 460 (723)
...+||.||.-|...+|...+.+. .. .+.| .|...|.-+. -+..-+..++ |.++
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~---h~------~~cd-------------~snn~v~~~~r~cd~~~~~~i~sndht~ 140 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDG---HL------YQCD-------------VSNNDVTLVKRYCDLKFPLNIASNDHTG 140 (344)
T ss_pred cccEEEeccccceeeeecccCccc---ce------eeec-------------ccccchhhhhhhcccccceeeccCCcce
Confidence 345799999999999998775322 00 1111 1222222111 1122234444 8888
Q ss_pred EEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCC-cEE-E-EEcCcCCcEEEEEEcCCCCEEEE
Q 004924 461 SIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTK-A-KLKGHQNRITCLAYSLSLNVLVS 536 (723)
Q Consensus 461 ~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~-~~~-~-~l~~~~~~i~~l~~spdg~~l~s 536 (723)
++.+++-+.......-..-.+.++++++|+ +.++.+....|..|.+... +.+ + .....+..-.+..|+.....+|+
T Consensus 141 k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv 220 (344)
T KOG4532|consen 141 KTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAV 220 (344)
T ss_pred eEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEE
Confidence 888876543333332222337889999999 9999998899999987653 322 2 22334445567889999999999
Q ss_pred EeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCC--EEEEE-cCCcEEEEECCCCceeEEecCCC--
Q 004924 537 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI--HLLSI-HEGQIDVYEAPTLNHTSQLVPDK-- 611 (723)
Q Consensus 537 ~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~--~l~~s-~dg~I~vwd~~~~~~~~~~~~~~-- 611 (723)
+..||++.|||++.........-. ....|. +.+..+.|++-|. .|..+ .-+.+.+.|+++++-.+.+....
T Consensus 221 ~~Qdg~~~I~DVR~~~tpm~~~ss-trp~hn---Ga~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~ 296 (344)
T KOG4532|consen 221 VFQDGTCAIYDVRNMATPMAEISS-TRPHHN---GAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDV 296 (344)
T ss_pred EecCCcEEEEEecccccchhhhcc-cCCCCC---CceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccc
Confidence 999999999999873211111111 122344 8999999998763 34445 56789999999988766654432
Q ss_pred ---C-CCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCC
Q 004924 612 ---M-DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 645 (723)
Q Consensus 612 ---h-~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~ 645 (723)
| ...|...+|+.++.-+.+.+++. +.=|++.+.
T Consensus 297 ~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~sr 333 (344)
T KOG4532|consen 297 ERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNILSR 333 (344)
T ss_pred cccccccccccccccCCCcccccccchh-hheeecccc
Confidence 1 23477777777776666555432 344555443
No 293
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.73 E-value=6.4e-06 Score=80.21 Aligned_cols=219 Identities=13% Similarity=0.124 Sum_probs=131.0
Q ss_pred EEEcCCCeEEEEECCCcEEEEeCCCC--cEEEEEcC---cCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeecee
Q 004924 484 FILLPQDLFAFGFDDSSILVHCPCTK--KTKAKLKG---HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 558 (723)
Q Consensus 484 l~~~p~~~l~sgs~dg~I~iwd~~~~--~~~~~l~~---~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~ 558 (723)
++.+.+|.+++.-.|..|.|-..+.. ..+.+... ..-.-..++|+||+..||.+...|+|++||+.+.+...-.+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p 82 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPP 82 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCc
Confidence 45567774444455777777654432 22232222 22345689999999999999999999999998743221111
Q ss_pred eeeeecCCCCCCCCeEEEEEccCC-------CEEEEEcCCcEEEEECCC-----CceeEEecCCC-CCCCeEEEEEeeCC
Q 004924 559 LHSFQTGLVPETTIVNHIQFHPDQ-------IHLLSIHEGQIDVYEAPT-----LNHTSQLVPDK-MDLPITYATYSCDG 625 (723)
Q Consensus 559 l~~~~~~~~~~~~~v~~l~~spdg-------~~l~~s~dg~I~vwd~~~-----~~~~~~~~~~~-h~~~v~~l~~spdg 625 (723)
-......- ...|..+.|.+.. ..++...+|.++-|-+.. .+...++.... +...|.++.++|..
T Consensus 83 ~~~~~~d~---~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 83 AMSFPGDL---SDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred ccccCCcc---ccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 11011111 1567777775432 344557888877666532 23333433222 36789999999998
Q ss_pred cEEEEEeCC-----------CcEEEEECCCCcEEEEee---------------------cccccCCCCccCccceEEEEE
Q 004924 626 KCIYVSCKS-----------GHVKVFDTSTLELRCQIN---------------------LTAYAQPGTISLELYPLVIAA 673 (723)
Q Consensus 626 ~~l~sgs~d-----------g~I~iwd~~~~~~~~~~~---------------------~~~~~~~g~~~~~v~~~~v~~ 673 (723)
++|++|+.. .-+..|.+-++.+-.... ...+...+.....|+ .+..
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~--kmSl 237 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIF--KMSL 237 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceE--EEEE
Confidence 888876642 135667655443211110 000011121233444 8999
Q ss_pred ecCCCCEEEEEECCCcEEEEecCCCc--eeeecCCCC
Q 004924 674 HPLEPNRIALGLTNGRVHVIEPLESE--VEWGKLPFT 708 (723)
Q Consensus 674 sp~d~~~las~s~Dg~v~iWd~~~~~--~~w~~~~~~ 708 (723)
|| ||..||+...+|.|.+|++.+=. .+|......
T Consensus 238 SP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eqP 273 (282)
T PF15492_consen 238 SP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQP 273 (282)
T ss_pred CC-CCCEEEEEEcCCeEEEEecCcchhhcccchhhCC
Confidence 99 99999999999999999998753 468775433
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.71 E-value=1.4e-07 Score=95.02 Aligned_cols=160 Identities=14% Similarity=0.033 Sum_probs=110.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE----EcCCcEEEEE
Q 004924 522 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS----IHEGQIDVYE 597 (723)
Q Consensus 522 i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~----s~dg~I~vwd 597 (723)
...+..+++++.++++..+....+++...... ..+.+....-. ..-+++.|..+.....+ +....+.+|.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~-----~~~~ai~~~~~~~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVP-----KRPTAISFIREDTSVLVADKAGDVYSFDILS 138 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeecc-----cCcceeeeeeccceEEEEeecCCceeeeeec
Confidence 44556778888999988888877887765322 11222211111 23345555555444443 2345667777
Q ss_pred CCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCC
Q 004924 598 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 677 (723)
Q Consensus 598 ~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d 677 (723)
...+.+...+ +|-..++.++|+||+++|+++..|..|++-.+.....+..+.. || ..-|. .++.-+
T Consensus 139 ~~~~~~~~~l---GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl------GH-~eFVS--~isl~~-- 204 (390)
T KOG3914|consen 139 ADSGRCEPIL---GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL------GH-KEFVS--TISLTD-- 204 (390)
T ss_pred ccccCcchhh---hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc------cc-Hhhee--eeeecc--
Confidence 6655554433 6799999999999999999999999999999887777766654 43 33344 666655
Q ss_pred CCEEEEEECCCcEEEEecCCCcee
Q 004924 678 PNRIALGLTNGRVHVIEPLESEVE 701 (723)
Q Consensus 678 ~~~las~s~Dg~v~iWd~~~~~~~ 701 (723)
+..|+++|.|++|++||+.+|++.
T Consensus 205 ~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 205 NYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred CceeeecCCCCcEEEEecccCCcc
Confidence 567899999999999999999865
No 295
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.70 E-value=1.8e-05 Score=79.53 Aligned_cols=208 Identities=17% Similarity=0.105 Sum_probs=138.7
Q ss_pred CcEEEEEcCCCcEEEEEeCCCCCe--EEEEEcCCC-eEEEEEC-----CCcEEEEeCC-CCcEEEEEcCcCCcEEEEEEc
Q 004924 458 GKISIFSLETFQTLATFANPPPIA--TYFILLPQD-LFAFGFD-----DSSILVHCPC-TKKTKAKLKGHQNRITCLAYS 528 (723)
Q Consensus 458 g~I~vwd~~~~~~~~~~~~~~~~v--~~l~~~p~~-~l~sgs~-----dg~I~iwd~~-~~~~~~~l~~~~~~i~~l~~s 528 (723)
....+||..+++....+....+.- -.-+|++|| +|++.-. .|.|-|||.. +.+.+..+..|.-.-..+.+.
T Consensus 28 ~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~ 107 (305)
T PF07433_consen 28 TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLM 107 (305)
T ss_pred cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEc
Confidence 346678888888877665433321 245799999 7776543 4689999998 667788888887778889999
Q ss_pred CCCCEEEEEe------------------CCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-c
Q 004924 529 LSLNVLVSSG------------------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H 589 (723)
Q Consensus 529 pdg~~l~s~s------------------~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~ 589 (723)
|||+.|+++- .+..+...|..+|+.+....+. ...|. ..|..+++.++|..++.. .
T Consensus 108 pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp--~~~~~---lSiRHLa~~~~G~V~~a~Q~ 182 (305)
T PF07433_consen 108 PDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP--PDLHQ---LSIRHLAVDGDGTVAFAMQY 182 (305)
T ss_pred CCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC--ccccc---cceeeEEecCCCcEEEEEec
Confidence 9998877652 2335666677777654443332 12233 689999999999887764 2
Q ss_pred CC-------cEEEEECCCCceeEEecCC-----CCCCCeEEEEEeeCCcEEEEEe-CCCcEEEEECCCCcEEEEeecccc
Q 004924 590 EG-------QIDVYEAPTLNHTSQLVPD-----KMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAY 656 (723)
Q Consensus 590 dg-------~I~vwd~~~~~~~~~~~~~-----~h~~~v~~l~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~ 656 (723)
.| -+.+++. ++.+..+... .-.+.+-++++++++.+++++| .-|.+.+||..+++.+......
T Consensus 183 qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~-- 258 (305)
T PF07433_consen 183 QGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP-- 258 (305)
T ss_pred CCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC--
Confidence 22 2444443 3323222221 1257899999999998886555 5688999999999988876532
Q ss_pred cCCCCccCccceEEEEEecCCCCEEEEEEC
Q 004924 657 AQPGTISLELYPLVIAAHPLEPNRIALGLT 686 (723)
Q Consensus 657 ~~~g~~~~~v~~~~v~~sp~d~~~las~s~ 686 (723)
. +..++..+ ++ +++|.+.
T Consensus 259 --------D--~cGva~~~-~~-f~~ssG~ 276 (305)
T PF07433_consen 259 --------D--ACGVAPTD-DG-FLVSSGQ 276 (305)
T ss_pred --------c--eeeeeecC-Cc-eEEeCCC
Confidence 1 33666655 33 5555543
No 296
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.69 E-value=4.5e-05 Score=77.01 Aligned_cols=219 Identities=13% Similarity=0.105 Sum_probs=140.9
Q ss_pred EEEEeC-CCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEE
Q 004924 379 RLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA 455 (723)
Q Consensus 379 ~l~fsp-dg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~ 455 (723)
++.|.+ +|.++++--..+.|..|+..++.. ..+. ... ...+++. +..++.+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~-----------~~~~--------------~~~-~~G~~~~~~~g~l~v~ 57 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV-----------EVID--------------LPG-PNGMAFDRPDGRLYVA 57 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE-----------EEEE--------------SSS-EEEEEEECTTSEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE-----------EEEe--------------cCC-CceEEEEccCCEEEEE
Confidence 578888 566555555577887777653221 0111 112 5566666 6677777
Q ss_pred eCCcEEEEEcCCCcEEEEEeC-----CCCCeEEEEEcCCC-eEEEEECC--------CcEEEEeCCCCcEEEEEcCcCCc
Q 004924 456 SGGKISIFSLETFQTLATFAN-----PPPIATYFILLPQD-LFAFGFDD--------SSILVHCPCTKKTKAKLKGHQNR 521 (723)
Q Consensus 456 sdg~I~vwd~~~~~~~~~~~~-----~~~~v~~l~~~p~~-~l~sgs~d--------g~I~iwd~~~~~~~~~l~~~~~~ 521 (723)
..+.+.++|..+++....... .....+.+++.|+| ..++.... |.|..++.. ++...... .-..
T Consensus 58 ~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~ 135 (246)
T PF08450_consen 58 DSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGF 135 (246)
T ss_dssp ETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESS
T ss_pred EcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-Cccc
Confidence 766667779988865444432 34567899999999 66655543 558888877 55444333 3456
Q ss_pred EEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCc--eeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEE
Q 004924 522 ITCLAYSLSLNVLV-SSGADAQLCVWDAVGWK--KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 597 (723)
Q Consensus 522 i~~l~~spdg~~l~-s~s~dg~I~vwd~~~~~--~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd 597 (723)
.+.++|+|+++.|+ +-+..+.|..+++.... ......+..+.... +....+++..+|+..++. ..+.|.++|
T Consensus 136 pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----g~pDG~~vD~~G~l~va~~~~~~I~~~~ 211 (246)
T PF08450_consen 136 PNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP----GYPDGLAVDSDGNLWVADWGGGRIVVFD 211 (246)
T ss_dssp EEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS----CEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred ccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC----cCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence 78999999998776 55667889999886422 21122222122211 247789999999877774 789999999
Q ss_pred CCCCceeEEecCCCCCCCeEEEEEe-eCCcEEEEEe
Q 004924 598 APTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSC 632 (723)
Q Consensus 598 ~~~~~~~~~~~~~~h~~~v~~l~~s-pdg~~l~sgs 632 (723)
.+ |+.+..+..+ ...+++++|. ++.+.|+..+
T Consensus 212 p~-G~~~~~i~~p--~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 212 PD-GKLLREIELP--VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp TT-SCEEEEEE-S--SSSEEEEEEESTTSSEEEEEE
T ss_pred CC-ccEEEEEcCC--CCCEEEEEEECCCCCEEEEEe
Confidence 96 8888888764 4589999995 6766666544
No 297
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.68 E-value=1.1e-05 Score=80.98 Aligned_cols=196 Identities=19% Similarity=0.140 Sum_probs=122.5
Q ss_pred eCCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEE-cCcC---CcE
Q 004924 448 RGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL-KGHQ---NRI 522 (723)
Q Consensus 448 s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l-~~~~---~~i 522 (723)
.++.+++++ ++.+..||..+|+.+............. ...++.+++++.++.++.+|..+|+.+... .... ...
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~ 113 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR 113 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccc
Confidence 377777777 9999999999999988887532211111 222336777778889999999999998874 3221 111
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCC--CCCCeEEEEEccCCCEEEEEcCCcEEEEECCC
Q 004924 523 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP--ETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT 600 (723)
Q Consensus 523 ~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~--~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~ 600 (723)
.......++..++.+..++.|..+|.++|+........ ....... ....+..-....++..++++.++.+..+|+.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~t 192 (238)
T PF13360_consen 114 SSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG-EPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLAT 192 (238)
T ss_dssp --SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS-TT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTT
T ss_pred cccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC-CCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCC
Confidence 22233334788889998999999999998765444332 1111000 00112233333345344445667544449999
Q ss_pred CceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEE
Q 004924 601 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ 650 (723)
Q Consensus 601 ~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~ 650 (723)
++.+.... ...+.. ....++..|++++.++.|..||+++|+.+..
T Consensus 193 g~~~w~~~----~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 193 GEKLWSKP----ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TEEEEEEC----SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CCEEEEec----CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 98654322 112222 2456788888888999999999999987653
No 298
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.68 E-value=1.5e-06 Score=93.99 Aligned_cols=246 Identities=12% Similarity=0.072 Sum_probs=173.1
Q ss_pred CCCCeEEEEEe-CCEEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCC------------C-eEEEEECCCcEEE
Q 004924 438 PKDSISCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQ------------D-LFAFGFDDSSILV 503 (723)
Q Consensus 438 h~~~V~~v~~s-~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~------------~-~l~sgs~dg~I~i 503 (723)
|...-.++.|+ +.++|.|+...|.+.|..+-+.++.+..|...|+.+.|.|- . .||++...|.|.+
T Consensus 14 ~~sN~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred CcccccccccCccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 33446678899 99999999999999999999999999999999999999863 2 6788888999999
Q ss_pred EeCCCCcEEEEEcCcCCcEEEEEEcC---CC-CEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEc
Q 004924 504 HCPCTKKTKAKLKGHQNRITCLAYSL---SL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 579 (723)
Q Consensus 504 wd~~~~~~~~~l~~~~~~i~~l~~sp---dg-~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~s 579 (723)
||...+..+..+..|..++.++.|-+ +. ..|+.-....++.+|+..+|++.... ..+| ....|+.+.
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~-----~ys~----~iLs~f~~D 164 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY-----DYSH----EILSCFRVD 164 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc-----ccCC----cceeeeeeC
Confidence 99999988888988999999999966 33 45666777789999999998654332 2223 456668887
Q ss_pred cC-CCEEEE-EcCCcEEEEECCC-------CceeEEecCC--------------CCCC---------CeEEEEEeeCCcE
Q 004924 580 PD-QIHLLS-IHEGQIDVYEAPT-------LNHTSQLVPD--------------KMDL---------PITYATYSCDGKC 627 (723)
Q Consensus 580 pd-g~~l~~-s~dg~I~vwd~~~-------~~~~~~~~~~--------------~h~~---------~v~~l~~spdg~~ 627 (723)
|- .+.++. +..|.+-+-+.-. |+..+.-..+ .+.. ....++|+|.-+.
T Consensus 165 Pfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn 244 (1062)
T KOG1912|consen 165 PFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRN 244 (1062)
T ss_pred CCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhc
Confidence 74 355554 6666666555321 2222111100 0000 1123567887776
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecC-CCCEEEEEECCCcEEEEecCCCceee
Q 004924 628 IYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL-EPNRIALGLTNGRVHVIEPLESEVEW 702 (723)
Q Consensus 628 l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~-d~~~las~s~Dg~v~iWd~~~~~~~w 702 (723)
++-......+.++|++-...+.+.... .+.+. -+.|-|+ ....|.+.-.||.+.||--..-..++
T Consensus 245 ~lfi~~prellv~dle~~~~l~vvpie--------r~~ak--fv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f 310 (1062)
T KOG1912|consen 245 ILFITFPRELLVFDLEYECCLAVVPIE--------RGGAK--FVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEF 310 (1062)
T ss_pred eEEEEeccceEEEcchhhceeEEEEec--------cCCcc--eeEeccCCCcceEEEEecCCeEEEEEeeccCccc
Confidence 666667788999999988887777543 22333 3455551 34579999999999999876643333
No 299
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.68 E-value=1.9e-05 Score=85.73 Aligned_cols=187 Identities=11% Similarity=0.044 Sum_probs=113.4
Q ss_pred CceEEEEEeCCCCE-EEEEECC---CcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--
Q 004924 375 GRVVRLIYSHSGDF-LVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 448 (723)
Q Consensus 375 ~~V~~l~fspdg~~-las~s~d---g~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-- 448 (723)
+......|||||+. ++..+.+ ..|.++|+. ++...... ...+......|+
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~---------------------tg~~~~lt---~~~g~~~~~~~SPD 243 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLY---------------------TGKKEKIA---SSQGMLVVSDVSKD 243 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECC---------------------CCcEEEEe---cCCCcEEeeEECCC
Confidence 36788999999985 6655554 335555543 33222111 133445567788
Q ss_pred CCEEEEEe--C--CcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEEC-CC--cEEEEeCCCCcEEEEEcCcCC
Q 004924 449 GSHLFSAS--G--GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-DS--SILVHCPCTKKTKAKLKGHQN 520 (723)
Q Consensus 449 ~~~l~s~s--d--g~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~-dg--~I~iwd~~~~~~~~~l~~~~~ 520 (723)
|+.++... + ..|.++|+.+++.. .+..+........|+||| .|+..+. .+ .|+++|+.+++..+.... ..
T Consensus 244 G~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~ 321 (419)
T PRK04043 244 GSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK 321 (419)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC
Confidence 66655433 3 56888888777643 344333333456899999 6665553 33 688889988876443321 11
Q ss_pred cEEEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E-c
Q 004924 521 RITCLAYSLSLNVLVSSGAD---------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-H 589 (723)
Q Consensus 521 ~i~~l~~spdg~~l~s~s~d---------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~ 589 (723)
....|+|||+.++..+.. ..|.+.|+.++.. .. +..+ .......|+|||+.++. + .
T Consensus 322 --~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~---~~---LT~~-----~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 322 --NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI---RR---LTAN-----GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred --cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe---EE---CCCC-----CCcCCeEECCCCCEEEEEEcc
Confidence 124899999998877654 3688888887642 12 2222 12235889999998886 3 2
Q ss_pred C--CcEEEEECCC
Q 004924 590 E--GQIDVYEAPT 600 (723)
Q Consensus 590 d--g~I~vwd~~~ 600 (723)
. ..+.+.++..
T Consensus 389 ~~~~~L~~~~l~g 401 (419)
T PRK04043 389 GNQSALGIIRLNY 401 (419)
T ss_pred CCcEEEEEEecCC
Confidence 2 2477778743
No 300
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.68 E-value=1.4e-08 Score=110.57 Aligned_cols=195 Identities=14% Similarity=0.188 Sum_probs=140.6
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-e-EEEEECCC-cEEEEeCCC-C
Q 004924 437 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-L-FAFGFDDS-SILVHCPCT-K 509 (723)
Q Consensus 437 ~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~-l~sgs~dg-~I~iwd~~~-~ 509 (723)
.|....+|++|+ .+.|+.|+ .|.|+++++.+|.......+|..+|+.+.-+.+| . |.+++... ...+|++.+ +
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence 478889999999 67899999 9999999999999999999999999999999999 4 44444443 577899764 4
Q ss_pred cEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEc
Q 004924 510 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH 589 (723)
Q Consensus 510 ~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~ 589 (723)
...+.|.+ -.++.|+.....-+.|+......+||+.++.. +.++..+.......-++..|+|+.+.++-
T Consensus 1179 ~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~-----l~tylt~~~~~~y~~n~a~FsP~D~LIln-- 1247 (1516)
T KOG1832|consen 1179 GPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSP-----LQTYLTDTVTSSYSNNLAHFSPCDTLILN-- 1247 (1516)
T ss_pred Cccccccc----cceeehhhhHHHHHhcccccceEEEecccCcH-----HHHhcCcchhhhhhccccccCCCcceEee--
Confidence 55555543 35678877655555666666788999999643 33222221110123467889999888763
Q ss_pred CCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEee
Q 004924 590 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 652 (723)
Q Consensus 590 dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~ 652 (723)
|| .+||++..+.++.|.. -..-..-.|+|.|.-++..++ |||+++.++++...
T Consensus 1248 dG--vLWDvR~~~aIh~FD~---ft~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1248 DG--VLWDVRIPEAIHRFDQ---FTDYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVP 1300 (1516)
T ss_pred Cc--eeeeeccHHHHhhhhh---heecccccccCCCceEEeech-----hhhhHHHHHHhcCc
Confidence 33 3799998877776642 222234568999999998875 89999988776654
No 301
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.68 E-value=2e-05 Score=79.21 Aligned_cols=182 Identities=15% Similarity=0.145 Sum_probs=123.1
Q ss_pred EEEe--CCEEEEEe-C-----CcEEEEEcC-CCcEEEEEeCCCCCeEEEEEcCCC-eEEEEE------------------
Q 004924 445 FALR--GSHLFSAS-G-----GKISIFSLE-TFQTLATFANPPPIATYFILLPQD-LFAFGF------------------ 496 (723)
Q Consensus 445 v~~s--~~~l~s~s-d-----g~I~vwd~~-~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs------------------ 496 (723)
-.|+ |++|++.- | |.|-|||.. +.+.+..+..+.-....+.+.||| .|+++.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 4677 88888764 3 789999998 677888888887777788999999 776653
Q ss_pred CCCcEEEEeCCCCcEEEEEc----CcCCcEEEEEEcCCCCEEEEEeCCCc-------EEEEeCCCCceeeceeeeeeecC
Q 004924 497 DDSSILVHCPCTKKTKAKLK----GHQNRITCLAYSLSLNVLVSSGADAQ-------LCVWDAVGWKKLCSKFLHSFQTG 565 (723)
Q Consensus 497 ~dg~I~iwd~~~~~~~~~l~----~~~~~i~~l~~spdg~~l~s~s~dg~-------I~vwd~~~~~~~~~~~l~~~~~~ 565 (723)
.+..+...|..+|+.+.... -|..+|..+++.++|..++..-..|. +-+++.... .. .+. .+..
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~--~~~-~p~~ 210 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LR--LLP-APEE 210 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ce--ecc-CChH
Confidence 12356667788888887643 37889999999999976665544332 333433221 00 000 1000
Q ss_pred C-CCCCCCeEEEEEccCCCEEEE-E-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcE
Q 004924 566 L-VPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 637 (723)
Q Consensus 566 ~-~~~~~~v~~l~~spdg~~l~~-s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I 637 (723)
. ......+-+|++++++.++++ | ..+.+.+||..+++.+.... -..+..++-.+++ ++++.+. |.+
T Consensus 211 ~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----l~D~cGva~~~~~-f~~ssG~-G~~ 279 (305)
T PF07433_consen 211 QWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----LPDACGVAPTDDG-FLVSSGQ-GQL 279 (305)
T ss_pred HHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----cCceeeeeecCCc-eEEeCCC-ccE
Confidence 0 001167899999999998877 4 77899999999999887654 3446666666666 5555543 443
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.67 E-value=6.6e-08 Score=95.22 Aligned_cols=163 Identities=12% Similarity=0.070 Sum_probs=119.3
Q ss_pred EEEcCC--C-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeee
Q 004924 484 FILLPQ--D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 560 (723)
Q Consensus 484 l~~~p~--~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~ 560 (723)
++|+-+ | + ++.+.+..|-+-|+.+|.. +.|. ..+.|.++.|...++.+..|+..|.|.++|++.+..-...+.+
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 366543 3 5 4555577788889888743 3343 5678889999998999999999999999999975333333444
Q ss_pred eeecCCCCCCCCeEEEEEcc-CCCEEEE-EcCCcEEEEECCCCce---eEEecCCCCCCCeEEEEEeeCCcEEEEEeCCC
Q 004924 561 SFQTGLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAPTLNH---TSQLVPDKMDLPITYATYSCDGKCIYVSCKSG 635 (723)
Q Consensus 561 ~~~~~~~~~~~~v~~l~~sp-dg~~l~~-s~dg~I~vwd~~~~~~---~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg 635 (723)
.+. |. ..|+++..-. ++++|.+ +.+|+|.+||.+.-++ ++++.++.....-.-+-..+....+++++.|.
T Consensus 294 rly--h~---Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDc 368 (425)
T KOG2695|consen 294 RLY--HD---SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDC 368 (425)
T ss_pred EEE--cC---cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCee
Confidence 333 33 6788887765 5667766 6999999999987666 88887543233333344567788999999999
Q ss_pred cEEEEECCCCcEEEEeecc
Q 004924 636 HVKVFDTSTLELRCQINLT 654 (723)
Q Consensus 636 ~I~iwd~~~~~~~~~~~~~ 654 (723)
..+||.++.|.++.++...
T Consensus 369 ytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 369 YTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred EEEEEecccCceeeccCCC
Confidence 9999999999999988643
No 303
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.61 E-value=4e-07 Score=91.87 Aligned_cols=159 Identities=10% Similarity=0.085 Sum_probs=107.4
Q ss_pred EEEEEcCCC-eEEEEECCCcEEEEeCCCCcE----EEEEcCcCCcEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCce
Q 004924 482 TYFILLPQD-LFAFGFDDSSILVHCPCTKKT----KAKLKGHQNRITCLAYSLSLNVLVSSGADA---QLCVWDAVGWKK 553 (723)
Q Consensus 482 ~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~----~~~l~~~~~~i~~l~~spdg~~l~s~s~dg---~I~vwd~~~~~~ 553 (723)
..+..++.+ .+|++..+....+++...... +.... -...-+.+.+..+......+..-| .+.+|....+
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~-- 142 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG-- 142 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc--
Confidence 344566777 888887777766666554332 21111 112233444444444444444444 4444544432
Q ss_pred eeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEe
Q 004924 554 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 632 (723)
Q Consensus 554 ~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs 632 (723)
.+ . ...||. ..+..++|+||+++|+++ .|+.|+|-....-..+..+.. +|...|..++.-++ ..|++||
T Consensus 143 ---~~-~-~~lGhv---Sml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl-GH~eFVS~isl~~~-~~LlS~s 212 (390)
T KOG3914|consen 143 ---RC-E-PILGHV---SMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL-GHKEFVSTISLTDN-YLLLSGS 212 (390)
T ss_pred ---Cc-c-hhhhhh---hhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc-ccHhheeeeeeccC-ceeeecC
Confidence 11 1 234676 789999999999999997 999999988877666667654 68999999998755 4589999
Q ss_pred CCCcEEEEECCCCcEEEEeec
Q 004924 633 KSGHVKVFDTSTLELRCQINL 653 (723)
Q Consensus 633 ~dg~I~iwd~~~~~~~~~~~~ 653 (723)
.|++|++||+.+|+.+.++..
T Consensus 213 GD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 213 GDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred CCCcEEEEecccCCcccccch
Confidence 999999999999998877654
No 304
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.56 E-value=5.2e-05 Score=74.02 Aligned_cols=202 Identities=17% Similarity=0.129 Sum_probs=129.2
Q ss_pred CCEEEEEeCCcEEEEEcCCC--cEEEEEe---CCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcC-----
Q 004924 449 GSHLFSASGGKISIFSLETF--QTLATFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG----- 517 (723)
Q Consensus 449 ~~~l~s~sdg~I~vwd~~~~--~~~~~~~---~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~----- 517 (723)
|+.||...|..|.|=..++. ..+.+.. .....-.-++|+||+ .||.+...|+|+++|+.. ..+..+..
T Consensus 9 Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~ 87 (282)
T PF15492_consen 9 GKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFP 87 (282)
T ss_pred CcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccC
Confidence 67777777777777655431 2222222 233345789999999 999999999999999874 44444432
Q ss_pred --cCCcEEEEEEcCC------CCEEEEEeCCCcEEEEeCCCCceeeceeeeee-ecCCCCCCCCeEEEEEccCCCEEEE-
Q 004924 518 --HQNRITCLAYSLS------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF-QTGLVPETTIVNHIQFHPDQIHLLS- 587 (723)
Q Consensus 518 --~~~~i~~l~~spd------g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~-~~~~~~~~~~v~~l~~spdg~~l~~- 587 (723)
-...|..+.|.+- ...|++...+|.++-|-+..+........+++ ...|.+ ..|.++.++|..+.|++
T Consensus 88 ~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp--~Gi~~~vy~p~h~LLlVg 165 (282)
T PF15492_consen 88 GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP--HGINSAVYHPKHRLLLVG 165 (282)
T ss_pred CccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC--CceeEEEEcCCCCEEEEe
Confidence 2245666666442 23577777888888887644321111111111 122323 78999999999888887
Q ss_pred E-c---CC-------cEEEEECCCCceeEE--------------------ec-------CCCCCCCeEEEEEeeCCcEEE
Q 004924 588 I-H---EG-------QIDVYEAPTLNHTSQ--------------------LV-------PDKMDLPITYATYSCDGKCIY 629 (723)
Q Consensus 588 s-~---dg-------~I~vwd~~~~~~~~~--------------------~~-------~~~h~~~v~~l~~spdg~~l~ 629 (723)
| . ++ .+..|.+-++.+... +. .......|..+..||||..||
T Consensus 166 G~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La 245 (282)
T PF15492_consen 166 GCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLA 245 (282)
T ss_pred ccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEE
Confidence 3 1 11 356666433221111 00 011256789999999999999
Q ss_pred EEeCCCcEEEEECCCCcEEEEeec
Q 004924 630 VSCKSGHVKVFDTSTLELRCQINL 653 (723)
Q Consensus 630 sgs~dg~I~iwd~~~~~~~~~~~~ 653 (723)
+...+|.|.+|++.+-++...+..
T Consensus 246 ~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 246 CIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred EEEcCCeEEEEecCcchhhcccch
Confidence 999999999999999888777754
No 305
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.53 E-value=7.3e-07 Score=84.81 Aligned_cols=198 Identities=12% Similarity=0.051 Sum_probs=121.1
Q ss_pred eEEEEEcCCCeEEEEECCCcEEEEeCCCCcEE------------EEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 004924 481 ATYFILLPQDLFAFGFDDSSILVHCPCTKKTK------------AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 548 (723)
Q Consensus 481 v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~------------~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~ 548 (723)
++.+.+..+..|+++..++.+.......+.+. +.+..|+++-.+-..+--++.++++..||.+.+++.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 44555544336777777776665554433332 233334443333334445678999999999999998
Q ss_pred CCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE------cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEe
Q 004924 549 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 622 (723)
Q Consensus 549 ~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s------~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~s 622 (723)
+.-. .....++..|. .-.+.+....+..+.++ .-+..+.|+++..+....-. .....|++++-+
T Consensus 119 ~~~~----~~~~~i~~~~~----~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~--~~~~~v~~l~~h 188 (319)
T KOG4714|consen 119 DKDL----ALMSRIPSIHS----GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK--KALDAVTALCSH 188 (319)
T ss_pred hHHH----hhhhhcccccc----cccccceeecccEEecCCcceEeeccceeeecccccccccccc--cccccchhhhCC
Confidence 7511 11111222221 22233444455565552 23456677765433221111 113448899999
Q ss_pred eCC-cEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCC
Q 004924 623 CDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 623 pdg-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~ 697 (723)
|.. ..+++|+.||.+-+||.++......+.. .|..+++ .+-|||.++..|+++++||.+.-||..+
T Consensus 189 p~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~-------ahk~~i~--eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 189 PAQQHLVCCGTDDGIVGLWDARNVAMPVSLLK-------AHKAEIW--EVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccccEEEEecCCCeEEEEEcccccchHHHHH-------Hhhhhhh--heeccCCCchheeEecCCCcEEEEcCCC
Confidence 865 4666888999999999998744333221 1456677 9999999999999999999999999874
No 306
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.3e-06 Score=89.07 Aligned_cols=252 Identities=18% Similarity=0.079 Sum_probs=171.0
Q ss_pred CCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCC--C-cEEEEEeCCCCCeEEEEEcCCC-eEEEEEC-CCcEEEEeCCCCc
Q 004924 438 PKDSISCFALR-GSHLFSAS-GGKISIFSLET--F-QTLATFANPPPIATYFILLPQD-LFAFGFD-DSSILVHCPCTKK 510 (723)
Q Consensus 438 h~~~V~~v~~s-~~~l~s~s-dg~I~vwd~~~--~-~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~-dg~I~iwd~~~~~ 510 (723)
|.+.|+.+..+ .+++.+++ ||.++.|.-.. | +.+..+..|...+.+++.+-++ .+.+++. |..++++|+.+-.
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D 87 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD 87 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence 88888888888 99999999 99999997643 2 3445566788888899999999 8888777 9999999988765
Q ss_pred EEEEEcC--cCCcEEEEEEcCC-C--CEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEE
Q 004924 511 TKAKLKG--HQNRITCLAYSLS-L--NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 585 (723)
Q Consensus 511 ~~~~l~~--~~~~i~~l~~spd-g--~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l 585 (723)
.+..++- ..+.+.. ..++. - ...++.-.++.+.++|-....+ +..-...-|. .+|..+.+.+.+..+
T Consensus 88 minmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~----q~~~fkklH~---sPV~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 88 MINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFC----QDGYFKKLHF---SPVKKIRYNQAGDSA 159 (558)
T ss_pred hhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcC----ccceeccccc---CceEEEEeeccccce
Confidence 5433221 2222222 12222 1 2233344678999999876421 1221334455 799999999999888
Q ss_pred EEE-cCCcEEEEECCC------CceeEEecC-------CCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEe
Q 004924 586 LSI-HEGQIDVYEAPT------LNHTSQLVP-------DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 651 (723)
Q Consensus 586 ~~s-~dg~I~vwd~~~------~~~~~~~~~-------~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~ 651 (723)
++. ..|-|.-|.... .+....++. ........++.|+|+|..+.+-+.|..|++++..+|++++.+
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 885 778999998862 111111110 122567789999999999999999999999999999887655
Q ss_pred ecccc----cCC---C-----------------CccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCce
Q 004924 652 NLTAY----AQP---G-----------------TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 700 (723)
Q Consensus 652 ~~~~~----~~~---g-----------------~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~ 700 (723)
.-... .+. + .++. ..-+.+.|.. .+++|..++-=| |+|.++.++..
T Consensus 240 DE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~-~~~~~~~fde-s~~flly~t~~g-ikvin~~tn~v 309 (558)
T KOG0882|consen 240 DEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGS-TVGTNAVFDE-SGNFLLYGTILG-IKVINLDTNTV 309 (558)
T ss_pred hccchhhhhccccccccceeehhhhhhHHhhHhhhcC-cccceeEEcC-CCCEEEeeccee-EEEEEeecCeE
Confidence 42100 000 0 0111 1124667877 788988887654 88888888764
No 307
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.52 E-value=1e-06 Score=85.62 Aligned_cols=217 Identities=14% Similarity=0.116 Sum_probs=136.8
Q ss_pred CCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCc-----EEEEEcCcC------------CcEEEEEEcCCC--CEEEEE
Q 004924 478 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK-----TKAKLKGHQ------------NRITCLAYSLSL--NVLVSS 537 (723)
Q Consensus 478 ~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~-----~~~~l~~~~------------~~i~~l~~spdg--~~l~s~ 537 (723)
...|+++.|...| ++++|...|.|.+|.-.... ....|++|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4568899999999 99999999999999755422 122355554 357788887655 457778
Q ss_pred eCCCcEEEEeCCCCce--------------------ee-----------------ceeeeeeecCCCCCCCCeEEEEEcc
Q 004924 538 GADAQLCVWDAVGWKK--------------------LC-----------------SKFLHSFQTGLVPETTIVNHIQFHP 580 (723)
Q Consensus 538 s~dg~I~vwd~~~~~~--------------------~~-----------------~~~l~~~~~~~~~~~~~v~~l~~sp 580 (723)
+.|.+|++|.+..... .. ..+-+.....|. .-|.++.|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~---yhiNSiS~Ns 182 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHP---YHINSISFNS 182 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccce---eEeeeeeecC
Confidence 8899999998764210 00 000000012232 5678899999
Q ss_pred CCCEEEEEcCCcEEEEECCCCce---eEEecCCCC---CCCeEEEEEeeCC-cEEEEEeCCCcEEEEECCCCcEEE----
Q 004924 581 DQIHLLSIHEGQIDVYEAPTLNH---TSQLVPDKM---DLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRC---- 649 (723)
Q Consensus 581 dg~~l~~s~dg~I~vwd~~~~~~---~~~~~~~~h---~~~v~~l~~spdg-~~l~sgs~dg~I~iwd~~~~~~~~---- 649 (723)
|...++++.|-.|.+|++.--.. +..++++.- ..-|++..|+|.. ..+.-.+..|.|++-|++...+--
T Consensus 183 D~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 183 DKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred chheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 99999999999999999864322 222332110 3457889999965 455556678999999998543210
Q ss_pred --EeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 650 --QINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 650 --~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
..........+-......+.++.|++ +|.++++-+. -+|+|||+...+
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~-ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSD-NGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcC-CCcEEEEecc-ceEEEEeccccc
Confidence 00000000000001111145899999 8889887654 489999997643
No 308
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.52 E-value=1e-06 Score=83.83 Aligned_cols=193 Identities=16% Similarity=0.190 Sum_probs=110.9
Q ss_pred eEEEEEe-CCEEEEEe-CCcEEEEEcCCCcEE------------EEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeC
Q 004924 442 ISCFALR-GSHLFSAS-GGKISIFSLETFQTL------------ATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCP 506 (723)
Q Consensus 442 V~~v~~s-~~~l~s~s-dg~I~vwd~~~~~~~------------~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~ 506 (723)
+..+.++ ...|+++. ++.+......++.+. +.+..+.+.-.+-+.+-.+ .+++++.||.+.+++.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 5566666 55566665 666655554443332 2232222222122222334 7999999999999987
Q ss_pred CCCcE-EEEEcCcCCcEEEEEEcCCCCEEEEEe-----CCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEcc
Q 004924 507 CTKKT-KAKLKGHQNRITCLAYSLSLNVLVSSG-----ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 580 (723)
Q Consensus 507 ~~~~~-~~~l~~~~~~i~~l~~spdg~~l~s~s-----~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~sp 580 (723)
+.-.. .+........-.+.+....++.+.++. .-+..+.|+++.. .++...+. ....|.+++-+|
T Consensus 119 ~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~--------~t~~~~~~-~~~~v~~l~~hp 189 (319)
T KOG4714|consen 119 DKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPI--------KTLIPSKK-ALDAVTALCSHP 189 (319)
T ss_pred hHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccc--------cccccccc-ccccchhhhCCc
Confidence 64111 111111111111122222333333322 1234555665541 11111111 014589999999
Q ss_pred CCCEEEE-E-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEee-CCcEEEEEeCCCcEEEEECCC
Q 004924 581 DQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTST 644 (723)
Q Consensus 581 dg~~l~~-s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~sgs~dg~I~iwd~~~ 644 (723)
..+.++. | .||.+-+||.++......+. ..|+.+++.+-|+| ++..|+++++||.+.-||..+
T Consensus 190 ~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l-~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 190 AQQHLVCCGTDDGIVGLWDARNVAMPVSLL-KAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccccEEEEecCCCeEEEEEcccccchHHHH-HHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 8877765 4 88999999999875433332 25799999999998 667999999999999999875
No 309
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.51 E-value=0.00015 Score=69.55 Aligned_cols=140 Identities=13% Similarity=0.045 Sum_probs=91.0
Q ss_pred CEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEE
Q 004924 387 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFS 464 (723)
Q Consensus 387 ~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-dg~I~vwd 464 (723)
++++.||..+.+.--|.+++.. .|... -...+-+-+.- |++++.|+ .|.+.+.+
T Consensus 24 T~v~igSHs~~~~avd~~sG~~------------~We~i------------lg~RiE~sa~vvgdfVV~GCy~g~lYfl~ 79 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNL------------IWEAI------------LGVRIECSAIVVGDFVVLGCYSGGLYFLC 79 (354)
T ss_pred eEEEEecCCceEEEecCCCCcE------------Eeehh------------hCceeeeeeEEECCEEEEEEccCcEEEEE
Confidence 4566666667666655543322 24322 12334444444 88999999 99999999
Q ss_pred cCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcE
Q 004924 465 LETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL 543 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I 543 (723)
.++|.....+..-..--......+++ .+..|+.|++.+..|.++..++.+.+-..+...+-+..|-...|..+...|.+
T Consensus 80 ~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 80 VKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred ecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence 99998887776433222234567788 99999999999999999998888876544444455666633345555555555
Q ss_pred EEEeCCC
Q 004924 544 CVWDAVG 550 (723)
Q Consensus 544 ~vwd~~~ 550 (723)
---..+.
T Consensus 160 lavt~~~ 166 (354)
T KOG4649|consen 160 LAVTKNP 166 (354)
T ss_pred EEEccCC
Confidence 4444443
No 310
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.50 E-value=4.1e-05 Score=77.87 Aligned_cols=202 Identities=20% Similarity=0.234 Sum_probs=126.5
Q ss_pred EEEe--CCEEEEEe---CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCC-CCcEEEEE-
Q 004924 445 FALR--GSHLFSAS---GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPC-TKKTKAKL- 515 (723)
Q Consensus 445 v~~s--~~~l~s~s---dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~-~~~~~~~l- 515 (723)
.+++ |++++... ...|.|.|+..++.+..+..+. |.-.-|.+ .|.+-|.||.+.-..+. .|+.....
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t 175 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKST 175 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeec
Confidence 4555 77777765 4789999999999888876443 33334444 78888899999888877 46654322
Q ss_pred ---cCcCCcE-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCC---CCCCCCeEEEEEccCCCEEEE-
Q 004924 516 ---KGHQNRI-TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL---VPETTIVNHIQFHPDQIHLLS- 587 (723)
Q Consensus 516 ---~~~~~~i-~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~---~~~~~~v~~l~~spdg~~l~~- 587 (723)
.....++ ..-++...+..++-.+.+|.|+--|+.........+..-..... .-..+.-.-+++++....|++
T Consensus 176 ~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvL 255 (342)
T PF06433_consen 176 KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVL 255 (342)
T ss_dssp EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEE
T ss_pred cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEE
Confidence 1112222 23345555666777888999999888875433222222111000 000133446788876666554
Q ss_pred ---EcCC-------cEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCc-EEEEE-eCCCcEEEEECCCCcEEEEeec
Q 004924 588 ---IHEG-------QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK-CIYVS-CKSGHVKVFDTSTLELRCQINL 653 (723)
Q Consensus 588 ---s~dg-------~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~-~l~sg-s~dg~I~iwd~~~~~~~~~~~~ 653 (723)
+.++ .|.++|+.+++.+.++.. ..++.+++.+.+.+ +|++. ..++.+.+||..+|+.+.++..
T Consensus 256 Mh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 256 MHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 2222 599999999999999865 34677999998765 66654 4579999999999999988863
No 311
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1e-06 Score=89.86 Aligned_cols=215 Identities=13% Similarity=0.040 Sum_probs=147.0
Q ss_pred CCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCC---CcEEEEEcCcCCcEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCC
Q 004924 476 NPPPIATYFILLPQDLFAFGFDDSSILVHCPCT---KKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGW 551 (723)
Q Consensus 476 ~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~---~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~-dg~I~vwd~~~~ 551 (723)
-|...|+.+.......+.+++.||.++.|.-.. -+.+..+..|-+.|.+++.+-+|..+.+++. |..++++|+.+.
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 356667666554444899999999999997442 1344556778889999999999999999777 999999999874
Q ss_pred ceeeceeeeeeecCCCCCCCCeEEEEEccCC--CEEEEE--cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcE
Q 004924 552 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--IHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKC 627 (723)
Q Consensus 552 ~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg--~~l~~s--~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~ 627 (723)
.......+.-++ +.+ +...+|.. ..++++ .++.|.++|-....+...+...-|..+|..+.+.+-+..
T Consensus 87 DminmiKL~~lP-------g~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 87 DMINMIKLVDLP-------GFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred chhhhcccccCC-------Cce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 332222222111 122 22223321 244444 789999999876554333333468999999999999999
Q ss_pred EEEEeCCCcEEEEECCC------CcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCce
Q 004924 628 IYVSCKSGHVKVFDTST------LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 700 (723)
Q Consensus 628 l~sgs~dg~I~iwd~~~------~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~ 700 (723)
+++....|.|.-|..+. .++...+....++. +-....-.++++.|+| ++..+++-+.|..|++++..+|+-
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy-~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLY-GFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhh-cccccccCccceEEcc-ccCcccccCcccEEEEEEeccchh
Confidence 99999999999999873 22222222111110 1011222356999999 899999999999999999998863
No 312
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.40 E-value=0.0002 Score=79.76 Aligned_cols=289 Identities=13% Similarity=0.088 Sum_probs=163.2
Q ss_pred CEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCe--EEEEEeC-CEEEEEe-CCcEEE
Q 004924 387 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI--SCFALRG-SHLFSAS-GGKISI 462 (723)
Q Consensus 387 ~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V--~~v~~s~-~~l~s~s-dg~I~v 462 (723)
..++.++.++.+.-.|..+++. +|......... .....+ ..+...+ ..++.++ +|.|.-
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~------------~W~~~~~~~~~-----~~~~~~~~~g~~~~~~~~V~v~~~~g~v~A 124 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKV------------LWRYDPKLPAD-----RGCCDVVNRGVAYWDPRKVFFGTFDGRLVA 124 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChh------------hceeCCCCCcc-----ccccccccCCcEEccCCeEEEecCCCeEEE
Confidence 3466777788888888765432 24433221100 000111 1123334 7777777 999999
Q ss_pred EEcCCCcEEEEEeCCCCC-----e-EEEEEcCCCeEEEEE---------CCCcEEEEeCCCCcEEEEEcCcCC-------
Q 004924 463 FSLETFQTLATFANPPPI-----A-TYFILLPQDLFAFGF---------DDSSILVHCPCTKKTKAKLKGHQN------- 520 (723)
Q Consensus 463 wd~~~~~~~~~~~~~~~~-----v-~~l~~~p~~~l~sgs---------~dg~I~iwd~~~~~~~~~l~~~~~------- 520 (723)
+|.++|+.+..+...... + .+..+. ++.++.++ .++.+.-+|..+|+.+..+.....
T Consensus 125 lD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~ 203 (488)
T cd00216 125 LDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPT 203 (488)
T ss_pred EECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCC
Confidence 999999998887643221 1 111222 24444543 367899999999998877643211
Q ss_pred -------------cE-EEEEEcCCCCEEEEEeCCC------------------cEEEEeCCCCceeeceeeeeee----c
Q 004924 521 -------------RI-TCLAYSLSLNVLVSSGADA------------------QLCVWDAVGWKKLCSKFLHSFQ----T 564 (723)
Q Consensus 521 -------------~i-~~l~~spdg~~l~s~s~dg------------------~I~vwd~~~~~~~~~~~l~~~~----~ 564 (723)
.+ ...++.+.+..++.++.++ .|.-+|.++|+..-........ .
T Consensus 204 ~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~ 283 (488)
T cd00216 204 WGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYD 283 (488)
T ss_pred CCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccc
Confidence 01 1234455566777777665 6888999998765443221000 0
Q ss_pred CCCCCCCCeEEEEEccCCC---EEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEE---------
Q 004924 565 GLVPETTIVNHIQFHPDQI---HLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS--------- 631 (723)
Q Consensus 565 ~~~~~~~~v~~l~~spdg~---~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sg--------- 631 (723)
...+ ..+..+. .-+|. .+++ +.+|.++..|.++|+.+-..... ...++.+| ..++.+
T Consensus 284 ~~s~--p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~--~~vyv~~~~~~~~~~ 353 (488)
T cd00216 284 GPNQ--PSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP--GLVYLGAFHIPLGLP 353 (488)
T ss_pred cCCC--CeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC--ceEEEccccccccCc
Confidence 1100 0111111 11333 3444 47899999999999987765321 11233334 233332
Q ss_pred ---------eCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCceee
Q 004924 632 ---------CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW 702 (723)
Q Consensus 632 ---------s~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~w 702 (723)
..+|.+.-.|..+|+.+...........-..........++. .+..++.++.||.|+.+|..+|+..|
T Consensus 354 ~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~l~ald~~tG~~lW 430 (488)
T cd00216 354 PQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGYFRAFDATTGKELW 430 (488)
T ss_pred ccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCeEEEEECCCCceee
Confidence 246889999999999888775421000000000111011222 45688888999999999999999999
Q ss_pred ecCC
Q 004924 703 GKLP 706 (723)
Q Consensus 703 ~~~~ 706 (723)
+...
T Consensus 431 ~~~~ 434 (488)
T cd00216 431 KFRT 434 (488)
T ss_pred EEEC
Confidence 8754
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.39 E-value=6e-05 Score=86.33 Aligned_cols=235 Identities=13% Similarity=0.133 Sum_probs=134.3
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccc
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 412 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~ 412 (723)
+..++..+..+..+|.|.+-|..+ ....... .-.+.|.+++||||+..++..+..+++.+-...
T Consensus 76 fl~d~~~i~v~~~~G~iilvd~et----~~~eivg----~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~-------- 139 (1265)
T KOG1920|consen 76 FLADTNSICVITALGDIILVDPET----LELEIVG----NVDNGISAASWSPDEELLALITGRQTLLFMTKD-------- 139 (1265)
T ss_pred EecccceEEEEecCCcEEEEcccc----cceeeee----eccCceEEEeecCCCcEEEEEeCCcEEEEEecc--------
Confidence 556777788888899998888763 2222221 146899999999999999999998888665422
Q ss_pred cceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEeCCcEEEEEcCCCcE-EEEEeCCCCCeEEEEEcCCC
Q 004924 413 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETFQT-LATFANPPPIATYFILLPQD 490 (723)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~sdg~I~vwd~~~~~~-~~~~~~~~~~v~~l~~~p~~ 490 (723)
|++-..+.+.... ...+..-.+.|- ...=+-|+.|.-.-.+....+. ......+ +.-+++.|.-||
T Consensus 140 ---------f~~i~E~~L~~d~--~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~-~~~~~IsWRgDg 207 (1265)
T KOG1920|consen 140 ---------FEPIAEKPLDADD--ERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQD-DHKTSISWRGDG 207 (1265)
T ss_pred ---------ccchhcccccccc--ccccccceecccccceeeecchhhhcccccccccccccchhhc-cCCceEEEccCC
Confidence 2221111110000 011222233343 2222222222221111110000 0001111 223478999999
Q ss_pred -eEEEEE----CC-CcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCceeeceeeee
Q 004924 491 -LFAFGF----DD-SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG---ADAQLCVWDAVGWKKLCSKFLHS 561 (723)
Q Consensus 491 -~l~sgs----~d-g~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s---~dg~I~vwd~~~~~~~~~~~l~~ 561 (723)
++|+.. .+ ..|++||.+ |..-..-....+--.+++|-|.|..+++-. .|+.|.+|.-++ .......+.
T Consensus 208 ~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG-L~hg~f~l~- 284 (1265)
T KOG1920|consen 208 EYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG-LRHGEFVLP- 284 (1265)
T ss_pred cEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCC-ccccccccC-
Confidence 887732 23 789999966 543333222334456899999999888754 456788887654 211222222
Q ss_pred eecCCCCCCCCeEEEEEccCCCEEEE---EcCC-cEEEEECCCCc
Q 004924 562 FQTGLVPETTIVNHIQFHPDQIHLLS---IHEG-QIDVYEAPTLN 602 (723)
Q Consensus 562 ~~~~~~~~~~~v~~l~~spdg~~l~~---s~dg-~I~vwd~~~~~ 602 (723)
.+... ..+..++|+.++..|++ ...+ .|++|-+.+..
T Consensus 285 ~p~de----~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 285 FPLDE----KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred Ccccc----cchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 22222 34899999999999997 3334 59999987644
No 314
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.39 E-value=6.2e-06 Score=91.14 Aligned_cols=179 Identities=19% Similarity=0.230 Sum_probs=129.4
Q ss_pred CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEE
Q 004924 449 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 526 (723)
Q Consensus 449 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~ 526 (723)
+..++.|+ ...+..+|+.+.+..+...-..+.|+-+. .++ .+.+|...|+|.+-|.++.+.++++..|++.|.++.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 45666677 77888899998888777764444455444 466 899999999999999999999999999999998765
Q ss_pred EcCCCCEEEEEeC---------CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCC-CEEE-EEcCCcEEE
Q 004924 527 YSLSLNVLVSSGA---------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLL-SIHEGQIDV 595 (723)
Q Consensus 527 ~spdg~~l~s~s~---------dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg-~~l~-~s~dg~I~v 595 (723)
. .|+.|++++. |.-|+|||++.-..+. +++ ++ ....-+.|+|.- ..++ ++..|...+
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~-~~-------~~P~flrf~Psl~t~~~V~S~sGq~q~ 292 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQ-FP-------YGPQFLRFHPSLTTRLAVTSQSGQFQF 292 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhhccC--Ccc-cc-------cCchhhhhcccccceEEEEecccceee
Confidence 4 6788998875 4568999999843221 222 11 223456777763 3344 478899999
Q ss_pred EECCC-Cce-eEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEE
Q 004924 596 YEAPT-LNH-TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 641 (723)
Q Consensus 596 wd~~~-~~~-~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd 641 (723)
-|..+ +.+ ...+........+..+++|++|+.++.|..+|.|.+|.
T Consensus 293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 88332 111 12222222355699999999999999999999999997
No 315
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.38 E-value=0.00023 Score=81.72 Aligned_cols=233 Identities=12% Similarity=0.192 Sum_probs=143.3
Q ss_pred CCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCC----C--
Q 004924 439 KDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC----T-- 508 (723)
Q Consensus 439 ~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~----~-- 508 (723)
...|.++.|. ++.++.+. +|.|.+-|..+... .....-...|.+++|+||+ .++..+..+++.+-+-. .
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 4678899988 55555555 89999888876543 2222346789999999999 88888777777664421 0
Q ss_pred -----------------CcEEEEEcCcC---------------------CcEEEEEEcCCCCEEEEE-----eCCCcEEE
Q 004924 509 -----------------KKTKAKLKGHQ---------------------NRITCLAYSLSLNVLVSS-----GADAQLCV 545 (723)
Q Consensus 509 -----------------~~~~~~l~~~~---------------------~~i~~l~~spdg~~l~s~-----s~dg~I~v 545 (723)
|+.-..|.|.. +.=+.+.|--||.++++. ...+.|+|
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 01111222211 112358999999998873 22378999
Q ss_pred EeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE--E--cCCcEEEEECCCCceeEEecC--CCCCCCeEEE
Q 004924 546 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I--HEGQIDVYEAPTLNHTSQLVP--DKMDLPITYA 619 (723)
Q Consensus 546 wd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~--s--~dg~I~vwd~~~~~~~~~~~~--~~h~~~v~~l 619 (723)
||... . +........ +.-.+++|-|.|..+++ . +|+.|.+|.-+ |-....+.. +.....+..+
T Consensus 227 ~drEg-~------Lns~se~~~---~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L 295 (1265)
T KOG1920|consen 227 YDREG-A------LNSTSEPVE---GLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEEL 295 (1265)
T ss_pred ecccc-h------hhcccCccc---ccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchhee
Confidence 99873 2 111111111 34558999999999997 2 66789999863 333222221 1224458999
Q ss_pred EEeeCCcEEEE---EeCCCcEEEEECCCCcE--EEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEe
Q 004924 620 TYSCDGKCIYV---SCKSGHVKVFDTSTLEL--RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 694 (723)
Q Consensus 620 ~~spdg~~l~s---gs~dg~I~iwd~~~~~~--~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd 694 (723)
+|+.++..|++ ......|++|-+.+..- .+.+..+ . .. -+.|+|.....+..-..+|...+++
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~--------~--~~--~~~W~p~~~~~L~v~~~sG~~~v~~ 363 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS--------Q--KA--LLMWDPVTEKTLHVLRESGQRLVRD 363 (1265)
T ss_pred eecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecc--------c--cc--cccccCCCceeEEEEecCCcEEEEE
Confidence 99999999987 44555699999887542 2222211 1 01 2567765444455544555555544
Q ss_pred c
Q 004924 695 P 695 (723)
Q Consensus 695 ~ 695 (723)
.
T Consensus 364 ~ 364 (1265)
T KOG1920|consen 364 F 364 (1265)
T ss_pred E
Confidence 4
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=0.00011 Score=74.57 Aligned_cols=240 Identities=19% Similarity=0.114 Sum_probs=143.0
Q ss_pred CCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCc
Q 004924 437 DPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK 510 (723)
Q Consensus 437 ~h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~ 510 (723)
+|...|.+++|+ ..++..++ +.+|+|.|+++..++..+..+ ..+++++|.-|. .+.+|..+|.|.+||++..+
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 578889999999 44678888 999999999999998888877 789999999988 88899999999999998643
Q ss_pred E-EEEEcC--cCCcEEEEEE------cCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccC
Q 004924 511 T-KAKLKG--HQNRITCLAY------SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 581 (723)
Q Consensus 511 ~-~~~l~~--~~~~i~~l~~------spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spd 581 (723)
- ...+.+ ...+|..++. .+.|..++..+.+ +..|.+..... +..++ +..+.. +...++..++.
T Consensus 270 ~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~-~~p~v--lele~p---G~cismqy~~~ 341 (463)
T KOG1645|consen 270 GPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAE-CLPCV--LELEPP---GICISMQYHGV 341 (463)
T ss_pred chHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhcccc-CCCcc--cccCCC---cceeeeeecCc
Confidence 2 222222 2234444433 2234445444433 34566543211 00111 111111 45667777776
Q ss_pred CCEEEEE--cCC---cEE----EEECCCCceeEEecCCCCCCC-----eEEEEE-eeCCcEEE-EEeCCCcEEEEECCCC
Q 004924 582 QIHLLSI--HEG---QID----VYEAPTLNHTSQLVPDKMDLP-----ITYATY-SCDGKCIY-VSCKSGHVKVFDTSTL 645 (723)
Q Consensus 582 g~~l~~s--~dg---~I~----vwd~~~~~~~~~~~~~~h~~~-----v~~l~~-spdg~~l~-sgs~dg~I~iwd~~~~ 645 (723)
.+.++.+ .+. +++ --|..+|..+..-+....+.. -....+ .++.++++ .|...+.+.+||..++
T Consensus 342 snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ 421 (463)
T KOG1645|consen 342 SNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF 421 (463)
T ss_pred cceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchh
Confidence 6666553 211 111 122233443322211100110 011122 35556666 4555688999999999
Q ss_pred cEEEEeecccccCCCCccCccceEEEEEecCC-CCEEEEEECCCcEEEEecCC
Q 004924 646 ELRCQINLTAYAQPGTISLELYPLVIAAHPLE-PNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 646 ~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d-~~~las~s~Dg~v~iWd~~~ 697 (723)
+.+.++.. +.++. ++.....+ +.+|++-+ |..++|+..++
T Consensus 422 evvQ~l~~---------~epv~--Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 422 EVVQTLAL---------SEPVL--DICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred heeeeccc---------Cccee--ecceeecCCcchhhhee-cceEEEEecCC
Confidence 99999875 33444 66555433 44777775 45799987654
No 317
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.33 E-value=1.6e-06 Score=59.52 Aligned_cols=39 Identities=33% Similarity=0.579 Sum_probs=36.9
Q ss_pred CcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 004924 509 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 547 (723)
Q Consensus 509 ~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd 547 (723)
|+++..+.+|.+.|++++|+|++..+++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=2e-05 Score=86.39 Aligned_cols=187 Identities=19% Similarity=0.248 Sum_probs=126.1
Q ss_pred CeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceee
Q 004924 480 IATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 559 (723)
Q Consensus 480 ~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l 559 (723)
.++|++++.. .|+-|+.+|.|++++.. |.+ .+...|... ..+|.++++|+.||+|.|-.+-+.+..+...+
T Consensus 41 ~is~~av~~~-~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df 111 (846)
T KOG2066|consen 41 AISCCAVHDK-FFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF 111 (846)
T ss_pred HHHHHHhhcc-eeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEec
Confidence 4455555422 89999999999999965 444 333335443 66899999999999999998877543332222
Q ss_pred eeeecCCCCCCCCeEEEEEccC-----CCEEEEE-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeC
Q 004924 560 HSFQTGLVPETTIVNHIQFHPD-----QIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 633 (723)
Q Consensus 560 ~~~~~~~~~~~~~v~~l~~spd-----g~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~ 633 (723)
+ .++.+++++|+ .+.+++| ..| +.++.-+-..-..........++|.++.|. |+++|-++.
T Consensus 112 ~----------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand 178 (846)
T KOG2066|consen 112 K----------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAND 178 (846)
T ss_pred C----------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecC
Confidence 2 68999999998 4566664 555 777654311111111122338899999994 788888887
Q ss_pred CCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecC
Q 004924 634 SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 634 dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~ 696 (723)
+| |+|||+.+++.+..+...... .........+.|.+ + ..|+.| +..+|+|..+.
T Consensus 179 ~G-v~vyd~~~~~~l~~i~~p~~~----~R~e~fpphl~W~~-~-~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 179 DG-VKVYDTPTRQRLTNIPPPSQS----VRPELFPPHLHWQD-E-DRLVIG-WGDSVKICSIK 233 (846)
T ss_pred CC-cEEEeccccceeeccCCCCCC----CCcccCCCceEecC-C-CeEEEe-cCCeEEEEEEe
Confidence 77 899999999988887754311 12234455889988 3 455555 44478888887
No 319
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.30 E-value=0.0015 Score=72.73 Aligned_cols=236 Identities=14% Similarity=0.137 Sum_probs=135.9
Q ss_pred CEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCe-EEEEEeCCEEEEEe---------
Q 004924 387 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI-SCFALRGSHLFSAS--------- 456 (723)
Q Consensus 387 ~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-~~v~~s~~~l~s~s--------- 456 (723)
..++.++.++.|..+|..+++. +|......... ....+ .+..+.+..++.++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~------------~W~~~~~~~~~------~~~~i~ssP~v~~~~v~vg~~~~~~~~~~ 172 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQ------------VWKFGNNDQVP------PGYTMTGAPTIVKKLVIIGSSGAEFFACG 172 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCE------------eeeecCCCCcC------cceEecCCCEEECCEEEEeccccccccCC
Confidence 5677888899998888775433 34433221100 00000 01112234444432
Q ss_pred -CCcEEEEEcCCCcEEEEEeCCCC--------------------Ce-EEEEEcCCC-eEEEEECCC--------------
Q 004924 457 -GGKISIFSLETFQTLATFANPPP--------------------IA-TYFILLPQD-LFAFGFDDS-------------- 499 (723)
Q Consensus 457 -dg~I~vwd~~~~~~~~~~~~~~~--------------------~v-~~l~~~p~~-~l~sgs~dg-------------- 499 (723)
+|.+..+|..+|+.+..+..... .+ ...++.+.+ .++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence 57889999999998887753211 11 123445445 777776665
Q ss_pred ----cEEEEeCCCCcEEEEEcCcCCcE------EEEEEc----CCCC---EEEEEeCCCcEEEEeCCCCceeeceeeeee
Q 004924 500 ----SILVHCPCTKKTKAKLKGHQNRI------TCLAYS----LSLN---VLVSSGADAQLCVWDAVGWKKLCSKFLHSF 562 (723)
Q Consensus 500 ----~I~iwd~~~~~~~~~l~~~~~~i------~~l~~s----pdg~---~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~ 562 (723)
.|.-+|..+|+....++.-.... ....+. -+|. .++.++.+|.+...|.++|+.+-.....
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-- 330 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-- 330 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--
Confidence 79999999999987764211111 001111 1343 5778888999999999998765443322
Q ss_pred ecCCCCCCCCeEEEEEccCCCEEEE------------------EcCCcEEEEECCCCceeEEecCCCCC------CCeEE
Q 004924 563 QTGLVPETTIVNHIQFHPDQIHLLS------------------IHEGQIDVYEAPTLNHTSQLVPDKMD------LPITY 618 (723)
Q Consensus 563 ~~~~~~~~~~v~~l~~spdg~~l~~------------------s~dg~I~vwd~~~~~~~~~~~~~~h~------~~v~~ 618 (723)
...++.+| +...+. ..+|.+.-.|..+|+.+-+.....+. .+...
T Consensus 331 ----------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~ 399 (488)
T cd00216 331 ----------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWG 399 (488)
T ss_pred ----------ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccC
Confidence 00122233 111111 13567888888888876665432111 11111
Q ss_pred EEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeec
Q 004924 619 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 653 (723)
Q Consensus 619 l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 653 (723)
-.....+..|++++.||.|+.+|..+|+.+.+...
T Consensus 400 ~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 400 GSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred cceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 11123567899999999999999999999988764
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=1.8e-05 Score=86.77 Aligned_cols=185 Identities=15% Similarity=0.227 Sum_probs=129.9
Q ss_pred CCCCeEEEEEeCCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEE
Q 004924 438 PKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL 515 (723)
Q Consensus 438 h~~~V~~v~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l 515 (723)
....++|+++++..++-|+ +|.|++++... .. .+...|... ..+| ++++|+.||.|.|-.+-+.+....+
T Consensus 38 ~~D~is~~av~~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 38 QNDAISCCAVHDKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hhhHHHHHHhhcceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 3566778888899999999 99999998753 32 332233322 5577 9999999999999998888777666
Q ss_pred cCcCCcEEEEEEcCC-----CCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcC
Q 004924 516 KGHQNRITCLAYSLS-----LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE 590 (723)
Q Consensus 516 ~~~~~~i~~l~~spd-----g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~d 590 (723)
. ...++.+++++|+ .+.+++|+..| +.++.-+=-.. ...+. +..+. ++|.++.|. |.++|-+.|
T Consensus 110 d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn--k~~v~-l~~~e----G~I~~i~W~--g~lIAWand 178 (846)
T KOG2066|consen 110 D-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN--KDSVV-LSEGE----GPIHSIKWR--GNLIAWAND 178 (846)
T ss_pred e-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC--cccee-eecCc----cceEEEEec--CcEEEEecC
Confidence 5 4578999999997 46799999888 77765332110 11111 22222 789999998 678888999
Q ss_pred CcEEEEECCCCceeEEecCCCC----CCCeEEEEEeeCCcEEEEEeCCCcEEEEECC
Q 004924 591 GQIDVYEAPTLNHTSQLVPDKM----DLPITYATYSCDGKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 591 g~I~vwd~~~~~~~~~~~~~~h----~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~ 643 (723)
-.|+|||+.+++.+..+..+.. ......+.|.++.+ |+.|- ..+|+|..++
T Consensus 179 ~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 179 DGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGW-GDSVKICSIK 233 (846)
T ss_pred CCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEec-CCeEEEEEEe
Confidence 9999999999888777654321 22344677876554 44443 3557777776
No 321
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00011 Score=81.24 Aligned_cols=205 Identities=14% Similarity=0.140 Sum_probs=129.3
Q ss_pred EEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCC-CEEEEEeCCCc-----EEEEeCCCCceee-c
Q 004924 485 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQ-----LCVWDAVGWKKLC-S 556 (723)
Q Consensus 485 ~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg-~~l~s~s~dg~-----I~vwd~~~~~~~~-~ 556 (723)
+|++.+ .++.|+.+|.|.+.+- +-+.++.|+.+...+...-|.-++ ..|++.+.|+. +++||++.-+... .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 466777 9999999999998873 345557777777663333344444 67888777654 8999987532111 1
Q ss_pred eee---e--eeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECC---CCceeEEecCCCCCCCeEEEEEeeCCcE
Q 004924 557 KFL---H--SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP---TLNHTSQLVPDKMDLPITYATYSCDGKC 627 (723)
Q Consensus 557 ~~l---~--~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~---~~~~~~~~~~~~h~~~v~~l~~spdg~~ 627 (723)
.++ . ++..+.. ..++.++++|.+-+.+++| .+|.|..+.-. .......+.. ....+|+.+++-.++..
T Consensus 109 ~c~~~~ri~~~~np~~--~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~-~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTN--PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSH-RGKEPITGLALRSDGKS 185 (933)
T ss_pred ceeeeeeeeccCCCCC--CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeec-cCCCCceeeEEecCCce
Confidence 122 1 1112211 2788999999998888888 88888887532 1111122222 23789999999988887
Q ss_pred EEEEeCCCcEEEEECCCCcE-EEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCceeeecC
Q 004924 628 IYVSCKSGHVKVFDTSTLEL-RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKL 705 (723)
Q Consensus 628 l~sgs~dg~I~iwd~~~~~~-~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~w~~~ 705 (723)
++-......|.+|.+....+ ...+. +++.+.+ |.++++ ....+++|+. ..|.+|+....++-|..+
T Consensus 186 ~lFv~Tt~~V~~y~l~gr~p~~~~ld--------~~G~~ln--Css~~~-~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 186 VLFVATTEQVMLYSLSGRTPSLKVLD--------NNGISLN--CSSFSD-GTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred eEEEEecceeEEEEecCCCcceeeec--------cCCccce--eeecCC-CCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 44444456788999884432 22232 1243444 888888 3344666653 468999987666555554
No 322
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.22 E-value=4.8e-06 Score=82.43 Aligned_cols=149 Identities=9% Similarity=0.089 Sum_probs=109.1
Q ss_pred EEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeE
Q 004924 341 VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQ 420 (723)
Q Consensus 341 a~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~ 420 (723)
++.+.+-.|-+-++++ +.-..+. ..+.|.++.|...++.+..|..+|.|...|+.....-.
T Consensus 228 fs~G~sqqv~L~nvet----g~~qsf~-----sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~---------- 288 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVET----GHQQSFQ-----SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGN---------- 288 (425)
T ss_pred ecccccceeEEEEeec----ccccccc-----cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCC----------
Confidence 5556677788888874 3222221 46889999999999999999999999999988543211
Q ss_pred EEecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCcE---EEEEeCCCCCeEEEEE--cCCC-
Q 004924 421 LYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQT---LATFANPPPIATYFIL--LPQD- 490 (723)
Q Consensus 421 ~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~~~~~---~~~~~~~~~~v~~l~~--~p~~- 490 (723)
+.+.+.+ .|.+.|+++..- +.+|++.+ +|+|++||.+--++ +.++.+|-..-.-+-+ .+..
T Consensus 289 ------~~~a~rl---yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg 359 (425)
T KOG2695|consen 289 ------GWCAQRL---YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG 359 (425)
T ss_pred ------CcceEEE---EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc
Confidence 1111111 388899887644 77888777 99999999976666 8888888654433333 4444
Q ss_pred eEEEEECCCcEEEEeCCCCcEEEEEcC
Q 004924 491 LFAFGFDDSSILVHCPCTKKTKAKLKG 517 (723)
Q Consensus 491 ~l~sgs~dg~I~iwd~~~~~~~~~l~~ 517 (723)
.+++++.|...+||.++.|..+.++..
T Consensus 360 ~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 360 SIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred eEEEccCeeEEEEEecccCceeeccCC
Confidence 888899999999999999998887754
No 323
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.22 E-value=0.00042 Score=74.35 Aligned_cols=110 Identities=14% Similarity=0.148 Sum_probs=80.4
Q ss_pred CCCeEEEEEe---CCEEEEEe-----CCc----EEEEEcCCCcEE--EEEe-CCCCCeEEEEEcCCC-eEEEEECCCcEE
Q 004924 439 KDSISCFALR---GSHLFSAS-----GGK----ISIFSLETFQTL--ATFA-NPPPIATYFILLPQD-LFAFGFDDSSIL 502 (723)
Q Consensus 439 ~~~V~~v~~s---~~~l~s~s-----dg~----I~vwd~~~~~~~--~~~~-~~~~~v~~l~~~p~~-~l~sgs~dg~I~ 502 (723)
+....++.|+ +..+.+.. +|. -.+|+...++.. .... .....|.|++++|+. .++.|+.||+|.
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence 3444677787 45555532 343 346666554322 2222 556788999999999 999999999999
Q ss_pred EEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 004924 503 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 550 (723)
Q Consensus 503 iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~ 550 (723)
+||...+... +....-..+.++|+|+|..+++|+..|.+.+||+.-
T Consensus 285 LyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 285 LYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 9998766332 323456678999999999999999999999999875
No 324
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.17 E-value=6.6e-06 Score=56.40 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=35.8
Q ss_pred CcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEe
Q 004924 468 FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC 505 (723)
Q Consensus 468 ~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd 505 (723)
|+++.++.+|...|++++|+|++ .+++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999 999999999999997
No 325
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.14 E-value=0.0053 Score=68.79 Aligned_cols=245 Identities=14% Similarity=0.047 Sum_probs=138.5
Q ss_pred EEeCCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCC----CeEEEEEcCCCeEEEEEC------CCcEEEEeCCCCcEEEE
Q 004924 446 ALRGSHLFSAS-GGKISIFSLETFQTLATFANPPP----IATYFILLPQDLFAFGFD------DSSILVHCPCTKKTKAK 514 (723)
Q Consensus 446 ~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~----~v~~l~~~p~~~l~sgs~------dg~I~iwd~~~~~~~~~ 514 (723)
++.+..++.++ ++.+.-.|..+|+.+........ .+++--.--++.++++.. +|.|.-+|.++|+.+-.
T Consensus 117 av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 117 ALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred eEECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 44455666666 99999999999999877652111 111111111344555432 68999999999988766
Q ss_pred EcCcCC-------------------------------cEE-EEEEcCCCCEEEEEeCC-----C-----------cEEEE
Q 004924 515 LKGHQN-------------------------------RIT-CLAYSLSLNVLVSSGAD-----A-----------QLCVW 546 (723)
Q Consensus 515 l~~~~~-------------------------------~i~-~l~~spdg~~l~s~s~d-----g-----------~I~vw 546 (723)
+..-.. .+. .+++.|....+..+... + .|.-.
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAl 276 (527)
T TIGR03075 197 RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVAR 276 (527)
T ss_pred ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEE
Confidence 532110 111 23566655566655522 2 46667
Q ss_pred eCCCCceeeceeeeeeecCCCC----CCCCeEEEEEccCCC---EEEE-EcCCcEEEEECCCCceeEEecCCC-------
Q 004924 547 DAVGWKKLCSKFLHSFQTGLVP----ETTIVNHIQFHPDQI---HLLS-IHEGQIDVYEAPTLNHTSQLVPDK------- 611 (723)
Q Consensus 547 d~~~~~~~~~~~l~~~~~~~~~----~~~~v~~l~~spdg~---~l~~-s~dg~I~vwd~~~~~~~~~~~~~~------- 611 (723)
|+++|+..-..... .|.. ......-+.+..+|+ .++. ..+|.+++.|..+|+.+.......
T Consensus 277 d~~TG~~~W~~Q~~----~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~ 352 (527)
T TIGR03075 277 DPDTGKIKWHYQTT----PHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATG 352 (527)
T ss_pred ccccCCEEEeeeCC----CCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccc
Confidence 88887654322111 1110 001122233335665 4444 489999999999998762210000
Q ss_pred ---CC-CC----------------------------eEEEEEeeCCcEEEEEeCC-------------------------
Q 004924 612 ---MD-LP----------------------------ITYATYSCDGKCIYVSCKS------------------------- 634 (723)
Q Consensus 612 ---h~-~~----------------------------v~~l~~spdg~~l~sgs~d------------------------- 634 (723)
.. .+ -..++++|+..+++....+
T Consensus 353 ~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 432 (527)
T TIGR03075 353 VDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTI 432 (527)
T ss_pred cCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceecccccc
Confidence 00 00 0125666666555543332
Q ss_pred --------CcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCceeeecCC
Q 004924 635 --------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLP 706 (723)
Q Consensus 635 --------g~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~w~~~~ 706 (723)
|.|.-+|+.+|+......... ......+.. .+.+++.++.||.++.+|..+|+..|....
T Consensus 433 ~p~~~~~~g~l~AiD~~tGk~~W~~~~~~---------p~~~~~l~t---~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 433 KPPPDDHMGSLIAWDPITGKIVWEHKEDF---------PLWGGVLAT---AGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred CCCCCCCceeEEEEeCCCCceeeEecCCC---------CCCCcceEE---CCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 457778888888777664321 001001221 345777788899999999999999998854
No 326
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.09 E-value=0.00057 Score=75.18 Aligned_cols=187 Identities=10% Similarity=0.013 Sum_probs=115.0
Q ss_pred CCEEEEEe--CCcEEEEEcCCCcEEEEEeCC-CCCeEE-------------------EEEcCCC-eE-EEEECCCcEEEE
Q 004924 449 GSHLFSAS--GGKISIFSLETFQTLATFANP-PPIATY-------------------FILLPQD-LF-AFGFDDSSILVH 504 (723)
Q Consensus 449 ~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~-~~~v~~-------------------l~~~p~~-~l-~sgs~dg~I~iw 504 (723)
|+|++.-. +..|-..+++..++-+.+.-+ ...+.. +-+.||| .+ .+.-..+.+.+.
T Consensus 141 Gr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvI 220 (635)
T PRK02888 141 GRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAV 220 (635)
T ss_pred eeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEE
Confidence 77787776 566777777766655444311 111111 2234455 33 223334567777
Q ss_pred eCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeC----------------------------------------CCcEE
Q 004924 505 CPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA----------------------------------------DAQLC 544 (723)
Q Consensus 505 d~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~----------------------------------------dg~I~ 544 (723)
|..+.+...++..- +....+.++|+|+++++.+. ++.|.
T Consensus 221 D~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~ 299 (635)
T PRK02888 221 DAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVP 299 (635)
T ss_pred ECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEE
Confidence 88777666555422 23456678888888776651 23466
Q ss_pred EEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE--cCCcEEEEECCCCce------------eEEecCC
Q 004924 545 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNH------------TSQLVPD 610 (723)
Q Consensus 545 vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s--~dg~I~vwd~~~~~~------------~~~~~~~ 610 (723)
+.|..+........+..++.+ .....+.++|||++++++ .+.++.|.|+.+.+. +.+...
T Consensus 300 VID~~t~~~~~~~v~~yIPVG-----KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev- 373 (635)
T PRK02888 300 VVDGRKAANAGSALTRYVPVP-----KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL- 373 (635)
T ss_pred EEECCccccCCcceEEEEECC-----CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-
Confidence 666554000001223334444 457789999999999984 678999999987553 333322
Q ss_pred CCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCC
Q 004924 611 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 644 (723)
Q Consensus 611 ~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~ 644 (723)
.......+|.++|....+-.-|+.|..|++..
T Consensus 374 --GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 --GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred --CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 33345678999998777888899999999886
No 327
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.08 E-value=0.00059 Score=73.94 Aligned_cols=223 Identities=10% Similarity=0.050 Sum_probs=112.2
Q ss_pred CCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCEE
Q 004924 374 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 452 (723)
Q Consensus 374 ~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l 452 (723)
......++++|+|++++. +.||.-.|+....... ...+.-....|. .+.+
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~----------------------------k~~G~g~~~vw~~~n~y 82 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN----------------------------KAFGSGLSFVWSSRNRY 82 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEE----------------------------EEEEE-SEEEE-TSSEE
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcc----------------------------cccCceeEEEEecCccE
Confidence 345678999999998887 4567777776321100 011223356677 5666
Q ss_pred EEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCC
Q 004924 453 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS 530 (723)
Q Consensus 453 ~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spd 530 (723)
|+-. .++|.++.--+.+..+.+... ..+..+-. | .|...+.+ .|.+||..+++.++.+... +|..+.|+++
T Consensus 83 Av~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~ 155 (443)
T PF04053_consen 83 AVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDD 155 (443)
T ss_dssp EEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TT
T ss_pred EEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECC
Confidence 7666 788999632222222233221 12333322 7 66666544 8999999999999998743 4899999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCC------ceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCcee
Q 004924 531 LNVLVSSGADAQLCVWDAVGW------KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHT 604 (723)
Q Consensus 531 g~~l~s~s~dg~I~vwd~~~~------~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~ 604 (723)
|.+++..+.+ .+.+++.+.. +.--...+..+..-. ..|.+.+|..+ -++.+... .|+- +-.|+..
T Consensus 156 g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~----~~IkSg~W~~d-~fiYtT~~-~lkY--l~~Ge~~ 226 (443)
T PF04053_consen 156 GELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEIS----ERIKSGCWVED-CFIYTTSN-HLKY--LVNGETG 226 (443)
T ss_dssp SSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-----S--SEEEEETT-EEEEE-TT-EEEE--EETTEEE
T ss_pred CCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEec----ceeEEEEEEcC-EEEEEcCC-eEEE--EEcCCcc
Confidence 9999988755 6777765431 000000122111111 57889999877 33444444 6665 3344432
Q ss_pred EEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCC
Q 004924 605 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 644 (723)
Q Consensus 605 ~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~ 644 (723)
.+.. -..++.=+.+.|..+.++....|+.+..+.+..
T Consensus 227 -~i~~--ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 227 -IIAH--LDKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp -EEEE---SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred -eEEE--cCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 2211 145566667777777777777787777776653
No 328
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=7.5e-05 Score=81.97 Aligned_cols=99 Identities=23% Similarity=0.307 Sum_probs=77.3
Q ss_pred CCEEEEEe-----CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcE
Q 004924 449 GSHLFSAS-----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 522 (723)
Q Consensus 449 ~~~l~s~s-----dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i 522 (723)
..++++++ .|.|.||- ++|++-+... ..-.+++++|+|.. .|+.|-.-|.+.+|...+.+.-.....|..+|
T Consensus 27 ePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i 104 (1416)
T KOG3617|consen 27 EPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPI 104 (1416)
T ss_pred CceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCc
Confidence 44555554 37787774 4566433322 12235689999999 99999999999999988776666667799999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 004924 523 TCLAYSLSLNVLVSSGADAQLCVWDAV 549 (723)
Q Consensus 523 ~~l~~spdg~~l~s~s~dg~I~vwd~~ 549 (723)
..+.|+++|..++++..-|.+.+|...
T Consensus 105 ~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 105 QGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeEEecCCCCeEEEcCCCceeEEEEee
Confidence 999999999999999999999999876
No 329
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.05 E-value=0.00064 Score=73.98 Aligned_cols=279 Identities=12% Similarity=0.083 Sum_probs=150.2
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 450 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 450 (723)
|...|.--+++..++|++.|++-|.+.+|+-..+.. . ....++..+.+.....+ ..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~---------------------~-~~~~~~~~~~~~~~~vs~~e~ 89 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM---------------------R-KLKNEGATGITCVRSVSSVEY 89 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhh---------------------h-cccccCccceEEEEEecchhH
Confidence 666777788889999999999999999998654322 0 01111223334444555 45
Q ss_pred EEEEEe-CCcEEEEEcCCCcEEE-----EE-eCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCc----EEEEEcCc
Q 004924 451 HLFSAS-GGKISIFSLETFQTLA-----TF-ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK----TKAKLKGH 518 (723)
Q Consensus 451 ~l~s~s-dg~I~vwd~~~~~~~~-----~~-~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~----~~~~l~~~ 518 (723)
++|.|+ .|.|.++-+..+.... .. ..|...|++++|++++ .+++|...|.|..-.+++.. ..+.+-..
T Consensus 90 lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ 169 (726)
T KOG3621|consen 90 LVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSE 169 (726)
T ss_pred hhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeecc
Confidence 566666 7889888876533211 11 2467889999999999 99999999999988877621 11222224
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCC-CeEEEEEccC----CCEEEEEcCCcE
Q 004924 519 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT-IVNHIQFHPD----QIHLLSIHEGQI 593 (723)
Q Consensus 519 ~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~-~v~~l~~spd----g~~l~~s~dg~I 593 (723)
.+.|..+.+.. + +|++++.-.. .+++++.+. +..+ |..+..+ .-...+|-|. .+-.+.+..-..
T Consensus 170 ds~IVQlD~~q-~-~LLVStl~r~-~Lc~tE~et------i~QI--G~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~ 238 (726)
T KOG3621|consen 170 DSEIVQLDYLQ-S-YLLVSTLTRC-ILCQTEAET------ITQI--GKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGL 238 (726)
T ss_pred CcceEEeeccc-c-eehHhhhhhh-heeecchhH------HHHh--cCCCcCCccccceEEeeccccCCCceEEEecCCC
Confidence 45666666542 3 3333332222 345555421 1101 0000001 1233455443 233333333445
Q ss_pred EEEECC-CCceeEEecCCC-----------CCC-----------CeEEEEEe----eCCcEEEEEeCCCcEEEEECCCCc
Q 004924 594 DVYEAP-TLNHTSQLVPDK-----------MDL-----------PITYATYS----CDGKCIYVSCKSGHVKVFDTSTLE 646 (723)
Q Consensus 594 ~vwd~~-~~~~~~~~~~~~-----------h~~-----------~v~~l~~s----pdg~~l~sgs~dg~I~iwd~~~~~ 646 (723)
|+|..+ .|+.+++..... +.. .-..+.|. -.+..+++-++-| |||+|..+.+
T Consensus 239 RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~ 317 (726)
T KOG3621|consen 239 RLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQ 317 (726)
T ss_pred ceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccce
Confidence 667654 344444322100 000 00011111 1122344444444 8899988876
Q ss_pred EEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 647 LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 647 ~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
...-... .+. +.+|+. +++-|.+--.|+.+++..+.+++
T Consensus 318 v~l~se~---------~~D--I~dVs~---~~neiFvL~~d~~l~~~sv~s~q 356 (726)
T KOG3621|consen 318 VYLWSEG---------GHD--ILDVSH---CGNEIFVLNLDRGLKVESVASRQ 356 (726)
T ss_pred EEEeecC---------CCc--eeEEee---cCceEEEEecCCceeEEEeehhH
Confidence 5544321 222 335554 45667777788888888887764
No 330
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.03 E-value=0.011 Score=61.72 Aligned_cols=268 Identities=14% Similarity=0.074 Sum_probs=123.2
Q ss_pred cCCCCCEEEEEeC-CCeEEEE--eecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCccc
Q 004924 333 SLPDADSAVCAKS-LEKSVNL--KLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 409 (723)
Q Consensus 333 ~spdg~~la~~s~-dg~v~iw--~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~ 409 (723)
|.+||+.++.++. ||.-.+| |+. +++..+++- + -.........+|+++.++....+..++--|+.+.+.
T Consensus 43 ft~dG~kllF~s~~dg~~nly~lDL~----t~~i~QLTd-g--~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~- 114 (386)
T PF14583_consen 43 FTDDGRKLLFASDFDGNRNLYLLDLA----TGEITQLTD-G--PGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE- 114 (386)
T ss_dssp B-TTS-EEEEEE-TTSS-EEEEEETT----T-EEEE----S--S-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-
T ss_pred cCCCCCEEEEEeccCCCcceEEEEcc----cCEEEECcc-C--CCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-
Confidence 7889988877766 5554444 555 577777642 1 112233566778888887776667777777765432
Q ss_pred ccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe----CCEEEEE----------------------e-CCcEEE
Q 004924 410 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSA----------------------S-GGKISI 462 (723)
Q Consensus 410 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s----~~~l~s~----------------------s-dg~I~v 462 (723)
-.+|... ...+....|. +..++.. . ...|.-
T Consensus 115 ---------~~vy~~p-------------~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 115 ---------RVVYEVP-------------DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp ---------EEEEE---------------TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred ---------EEEEECC-------------cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 1122221 1112112221 1121111 1 234566
Q ss_pred EEcCCCcEEEEEeCCCCCeEEEEEcCCC--eEEEEEC---CC-cEEEEeCCC-CcEEEEEcCcC--CcEEEEEEcCCCCE
Q 004924 463 FSLETFQTLATFANPPPIATYFILLPQD--LFAFGFD---DS-SILVHCPCT-KKTKAKLKGHQ--NRITCLAYSLSLNV 533 (723)
Q Consensus 463 wd~~~~~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~---dg-~I~iwd~~~-~~~~~~l~~~~--~~i~~l~~spdg~~ 533 (723)
.|+.+|+....+. ....+..+.|+|.. .|+-|-. +. .-+||-+++ |...+.+..+. ..+..=-|.|||..
T Consensus 173 idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~ 251 (386)
T PF14583_consen 173 IDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGST 251 (386)
T ss_dssp EETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-
T ss_pred EECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCE
Confidence 6788877655444 45667889999988 4444432 11 124554432 34444443332 23334458999987
Q ss_pred EEEEeC-----CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCC----------------
Q 004924 534 LVSSGA-----DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG---------------- 591 (723)
Q Consensus 534 l~s~s~-----dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg---------------- 591 (723)
+.--+. +..|.-+|..+++.. .+... .....+-.++||++++. |.|.
T Consensus 252 i~y~~~~~~~~~~~i~~~d~~t~~~~---~~~~~--------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p 320 (386)
T PF14583_consen 252 IWYDSYTPGGQDFWIAGYDPDTGERR---RLMEM--------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDP 320 (386)
T ss_dssp EEEEEEETTT--EEEEEE-TTT--EE---EEEEE---------SEEEEEE-TTSSEEEEEE-------------------
T ss_pred EEEEeecCCCCceEEEeeCCCCCCce---EEEeC--------CceeeeEEcCCCCEEEecCCCCCccccccccceecCCc
Confidence 654332 445777788875431 12211 23446667899999987 5432
Q ss_pred cEEEEECCCCceeEEec------C-CCCC-CCeEEEEEeeCCcEEEE-EeCCCcEEEEEC
Q 004924 592 QIDVYEAPTLNHTSQLV------P-DKMD-LPITYATYSCDGKCIYV-SCKSGHVKVFDT 642 (723)
Q Consensus 592 ~I~vwd~~~~~~~~~~~------~-~~h~-~~v~~l~~spdg~~l~s-gs~dg~I~iwd~ 642 (723)
-|+++++..++...... . .++. ..=....|||||++++- +...|...||-+
T Consensus 321 ~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 321 WIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred EEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 46778887665432111 0 0011 11246899999998775 445677666643
No 331
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.02 E-value=0.011 Score=61.73 Aligned_cols=282 Identities=13% Similarity=0.083 Sum_probs=133.2
Q ss_pred EEEeCCCCEEEEEEC-CCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe
Q 004924 380 LIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS 456 (723)
Q Consensus 380 l~fspdg~~las~s~-dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s 456 (723)
=+|.+||+.|+.+|. ||.-.+|- .|..+++..+..... +.. ......+ ++.++-..
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~-------------------lDL~t~~i~QLTdg~-g~~-~~g~~~s~~~~~~~Yv~ 99 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYL-------------------LDLATGEITQLTDGP-GDN-TFGGFLSPDDRALYYVK 99 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEE-------------------EETTT-EEEE---SS--B--TTT-EE-TTSSEEEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEE-------------------EEcccCEEEECccCC-CCC-ccceEEecCCCeEEEEE
Confidence 367889977776665 66655554 345555554433211 111 1123333 56665554
Q ss_pred -CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcC--CCeEEEEEC-----------------------CCcEEEEeCCCCc
Q 004924 457 -GGKISIFSLETFQTLATFANPPPIATYFILLP--QDLFAFGFD-----------------------DSSILVHCPCTKK 510 (723)
Q Consensus 457 -dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p--~~~l~sgs~-----------------------dg~I~iwd~~~~~ 510 (723)
+..++..|+.+.+....+..+...+....|.. ++..++|.. .+.|.-.|+.+|+
T Consensus 100 ~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~ 179 (386)
T PF14583_consen 100 NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE 179 (386)
T ss_dssp TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--
T ss_pred CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc
Confidence 67888899999887777777777776666643 343333321 1246666888887
Q ss_pred EEEEEcCcCCcEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEE
Q 004924 511 TKAKLKGHQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 585 (723)
Q Consensus 511 ~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg-----~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l 585 (723)
....+. -...+..+.|+|....+++=+..| .-|+|-+++... ...++..-..+ ..+..=-|.|||..|
T Consensus 180 ~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~-~~~~v~~~~~~-----e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 180 RKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS-NVKKVHRRMEG-----ESVGHEFWVPDGSTI 252 (386)
T ss_dssp EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TT-----EEEEEEEE-TTSS-E
T ss_pred eeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC-cceeeecCCCC-----cccccccccCCCCEE
Confidence 655554 456678899999655544433322 125554443110 11222211111 455666789999887
Q ss_pred EE-E--c---CCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC----------------CcEEEEECC
Q 004924 586 LS-I--H---EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS----------------GHVKVFDTS 643 (723)
Q Consensus 586 ~~-s--~---dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d----------------g~I~iwd~~ 643 (723)
.- + . +..|.-+|..+++...... ........-++||++++.=+.| -.|++++.+
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~~~~~~~~----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~ 328 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTGERRRLME----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE 328 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT--EEEEEE----E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred EEEeecCCCCceEEEeeCCCCCCceEEEe----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence 74 3 2 2357778888876543222 2234556667899988753332 257788888
Q ss_pred CCcEEEEeeccc---ccCCCCccCccceEEEEEecCCCCEE-EEEECCCcEEEEecCC
Q 004924 644 TLELRCQINLTA---YAQPGTISLELYPLVIAAHPLEPNRI-ALGLTNGRVHVIEPLE 697 (723)
Q Consensus 644 ~~~~~~~~~~~~---~~~~g~~~~~v~~~~v~~sp~d~~~l-as~s~Dg~v~iWd~~~ 697 (723)
.++... +..|. .+..|+.. +.--.+.|+| |++++ .++...|...||-++-
T Consensus 329 ~~~~~~-l~~h~~sw~v~~~~~q--~~hPhp~FSP-Dgk~VlF~Sd~~G~~~vY~v~i 382 (386)
T PF14583_consen 329 AGRFRK-LARHDTSWKVLDGDRQ--VTHPHPSFSP-DGKWVLFRSDMEGPPAVYLVEI 382 (386)
T ss_dssp TTEEEE-EEE-------BTTBSS--TT----EE-T-TSSEEEEEE-TTSS-EEEEEE-
T ss_pred cCceee-eeeccCcceeecCCCc--cCCCCCccCC-CCCEEEEECCCCCCccEEEEeC
Confidence 776532 22221 11222211 1123789999 67765 4555778777776543
No 332
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=97.98 E-value=8e-06 Score=50.26 Aligned_cols=27 Identities=41% Similarity=0.557 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHhhhc
Q 004924 129 EELIYLIHQFLNEEEFKETLHKLEQET 155 (723)
Q Consensus 129 ~evirlI~q~L~e~G~~~s~~~L~~Es 155 (723)
+++++||++||.++||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999996
No 333
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.96 E-value=0.029 Score=62.91 Aligned_cols=245 Identities=16% Similarity=0.124 Sum_probs=136.7
Q ss_pred CEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEE-EEEeCCEEEEEe-------CC
Q 004924 387 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC-FALRGSHLFSAS-------GG 458 (723)
Q Consensus 387 ~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-v~~s~~~l~s~s-------dg 458 (723)
..++.++.|+.+.-.|..+++. +|+....... ....+.+ ....+..++.+. +|
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~------------~W~~~~~~~~-------~~~~~tssP~v~~g~Vivg~~~~~~~~~G 181 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKV------------VWSKKNGDYK-------AGYTITAAPLVVKGKVITGISGGEFGVRG 181 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCE------------Eeeccccccc-------ccccccCCcEEECCEEEEeecccccCCCc
Confidence 3566777788888877764432 3543321100 0011111 112244444442 47
Q ss_pred cEEEEEcCCCcEEEEEeCCC-------------------------------CCe-EEEEEcCCC-eEEEEECC-----C-
Q 004924 459 KISIFSLETFQTLATFANPP-------------------------------PIA-TYFILLPQD-LFAFGFDD-----S- 499 (723)
Q Consensus 459 ~I~vwd~~~~~~~~~~~~~~-------------------------------~~v-~~l~~~p~~-~l~sgs~d-----g- 499 (723)
.|.-+|.++|+.+..+..-. ..+ ..+++.|.. +++.+..+ +
T Consensus 182 ~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~ 261 (527)
T TIGR03075 182 YVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSH 261 (527)
T ss_pred EEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCC
Confidence 89999999998887654211 111 134566655 55554422 2
Q ss_pred ----------cEEEEeCCCCcEEEEEcCcCCcEE---------EEEEcCCCC---EEEEEeCCCcEEEEeCCCCceeece
Q 004924 500 ----------SILVHCPCTKKTKAKLKGHQNRIT---------CLAYSLSLN---VLVSSGADAQLCVWDAVGWKKLCSK 557 (723)
Q Consensus 500 ----------~I~iwd~~~~~~~~~l~~~~~~i~---------~l~~spdg~---~l~s~s~dg~I~vwd~~~~~~~~~~ 557 (723)
.|.-.|++||+..-.++.....+. -+....+|+ .++.++.+|.+++.|.++|+.+...
T Consensus 262 ~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~ 341 (527)
T TIGR03075 262 LRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAE 341 (527)
T ss_pred CCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccc
Confidence 677778999998877765222222 222334665 6778999999999999998764211
Q ss_pred eee---eee------cCC-------------C-------C-CCCC--eEEEEEccCCCEEEE-EcC--------------
Q 004924 558 FLH---SFQ------TGL-------------V-------P-ETTI--VNHIQFHPDQIHLLS-IHE-------------- 590 (723)
Q Consensus 558 ~l~---~~~------~~~-------------~-------~-~~~~--v~~l~~spdg~~l~~-s~d-------------- 590 (723)
+.. ... .+. . + ..+. =..++++|+..++++ ..+
T Consensus 342 ~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~ 421 (527)
T TIGR03075 342 PFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKK 421 (527)
T ss_pred cccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCC
Confidence 100 000 000 0 0 0000 012566666555544 111
Q ss_pred -------------------CcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEe
Q 004924 591 -------------------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 651 (723)
Q Consensus 591 -------------------g~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~ 651 (723)
+.|.-+|+.+|+..-..... .+...-...-.+..++.++.||.++.+|.++|+.+..+
T Consensus 422 g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~---~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~ 498 (527)
T TIGR03075 422 GAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKED---FPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKF 498 (527)
T ss_pred CCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCC---CCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEE
Confidence 35777888888876655421 11111112235567778888999999999999999887
Q ss_pred ec
Q 004924 652 NL 653 (723)
Q Consensus 652 ~~ 653 (723)
..
T Consensus 499 ~~ 500 (527)
T TIGR03075 499 KT 500 (527)
T ss_pred eC
Confidence 64
No 334
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.96 E-value=0.021 Score=55.22 Aligned_cols=309 Identities=11% Similarity=0.060 Sum_probs=150.8
Q ss_pred CEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceee
Q 004924 338 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM 417 (723)
Q Consensus 338 ~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~ 417 (723)
.+++.|+..+.+.--|... +...--.. -...|.+-+.- -|++++.|...|.+.+-++.++..
T Consensus 24 T~v~igSHs~~~~avd~~s----G~~~We~i----lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~--------- 85 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQS----GNLIWEAI----LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ--------- 85 (354)
T ss_pred eEEEEecCCceEEEecCCC----CcEEeehh----hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhh---------
Confidence 3455666666666666653 22221111 12333333322 577899999999998888775432
Q ss_pred eeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCC-CeEEEE
Q 004924 418 ESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ-DLFAFG 495 (723)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~-~~l~sg 495 (723)
+|...... .-+.-..+++++..+..|+ |++....|..+..++...+.......+-+..|- +.|..+
T Consensus 86 ---~w~f~~~~---------~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a 153 (354)
T KOG4649|consen 86 ---IWNFVILE---------TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAA 153 (354)
T ss_pred ---eeeeeehh---------hhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEE
Confidence 24322111 1111123455588999999 999999999999998887766655556666773 355566
Q ss_pred ECCCcEEEEeCCCCcEEEEEc-CcCCcEEEE-EEcCCCCEEEEEeCCCcEEEEeCCCCceeec----eeeeeeecCCCCC
Q 004924 496 FDDSSILVHCPCTKKTKAKLK-GHQNRITCL-AYSLSLNVLVSSGADAQLCVWDAVGWKKLCS----KFLHSFQTGLVPE 569 (723)
Q Consensus 496 s~dg~I~iwd~~~~~~~~~l~-~~~~~i~~l-~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~----~~l~~~~~~~~~~ 569 (723)
...|.+.--..+++.....+. ...++|..- .+ -+..+..++-||.+.-+| ..|+.+.. .++. .....+.
T Consensus 154 ~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splc--v~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpIf-~~Pc~s~- 228 (354)
T KOG4649|consen 154 ITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLC--VGSSVIITTVDGVLTSFD-ESGRQVWRPATKGPIF-MEPCESR- 228 (354)
T ss_pred eccceEEEEccCCCCcceehhhhcCCccccCcee--ccceEEEEEeccEEEEEc-CCCcEEEeecCCCcee-cccccCC-
Confidence 666665555544442111111 011222210 00 123444455566655555 33322111 1111 0000000
Q ss_pred CCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEe-e---CCcEEEEEeCCCcEEEEECC--
Q 004924 570 TTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS-C---DGKCIYVSCKSGHVKVFDTS-- 643 (723)
Q Consensus 570 ~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~s-p---dg~~l~sgs~dg~I~iwd~~-- 643 (723)
..-..+.+..++-+.+......--+|..++|...+.+..+. ....++ | ..++|..++.||++.|.-..
T Consensus 229 -Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~-----l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~s 302 (354)
T KOG4649|consen 229 -PSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPK-----LRFDLHSPGISYPKLLRRSSGDGKVMILMTSKS 302 (354)
T ss_pred -CcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcc-----cceeccCCCCcchhhhhhhcCCCcEEEEEeccc
Confidence 00122333333322222222233467777775555443211 112222 2 24567788899999888433
Q ss_pred -------CCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCC
Q 004924 644 -------TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 644 -------~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
.|++...... .. .+.+...-+.. + ..|..|+.|..|+-||+.+.
T Consensus 303 l~~~~s~~g~lq~~~~~-el------~~eIFsSPvii---~-grl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 303 LAEISSNGGELQNLEAI-EL------SNEIFSSPVII---D-GRLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred ccccccCCCccceEEEe-ec------CcccccCCeEE---c-cEEEEEEccCeEEEEecccc
Confidence 3332211100 00 11122111111 3 35777888999999999764
No 335
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.0011 Score=73.55 Aligned_cols=204 Identities=13% Similarity=0.132 Sum_probs=128.9
Q ss_pred CeEEEEEeCCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCC-eEEEEEcCCC-eEEEEECCC-----cEEEEeCCCC---
Q 004924 441 SISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPI-ATYFILLPQD-LFAFGFDDS-----SILVHCPCTK--- 509 (723)
Q Consensus 441 ~V~~v~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~-v~~l~~~p~~-~l~sgs~dg-----~I~iwd~~~~--- 509 (723)
.++|+.-++..+|.|+ +|.|.+.+- ..+.++.+..+... |+.+-...+. .|++-+.|+ .++||+++..
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 5665554477888888 999888773 23444677766666 4433333333 666555544 5899998642
Q ss_pred ---cEEE--EEcC-----cCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEc
Q 004924 510 ---KTKA--KLKG-----HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 579 (723)
Q Consensus 510 ---~~~~--~l~~-----~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~s 579 (723)
.++. .+.+ ...++.+++.+.+-+.+|+|-.+|.|..+.-+- .+..-.+....... ..+|+.+++.
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi---~RDrgsr~~~~~~~--~~pITgL~~~ 180 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDI---LRDRGSRQDYSHRG--KEPITGLALR 180 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcc---hhccccceeeeccC--CCCceeeEEe
Confidence 2331 1222 356788999999999999999999998874321 11111111111111 1789999999
Q ss_pred cCCCE-EEEEcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEee
Q 004924 580 PDQIH-LLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 652 (723)
Q Consensus 580 pdg~~-l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~ 652 (723)
.+++. +.++....|.+|.+. |+....-....|+..+.|.++++....+++++ +..+++|+.........+.
T Consensus 181 ~d~~s~lFv~Tt~~V~~y~l~-gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 181 SDGKSVLFVATTEQVMLYSLS-GRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred cCCceeEEEEecceeEEEEec-CCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 99877 334666789999997 44322221235688889999987655344443 3569999988666555554
No 336
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.95 E-value=0.0075 Score=65.02 Aligned_cols=114 Identities=18% Similarity=0.255 Sum_probs=80.2
Q ss_pred CCeEEEEEccCC-CEEEE-----EcCCc----EEEEECCCCce--eEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEE
Q 004924 571 TIVNHIQFHPDQ-IHLLS-----IHEGQ----IDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK 638 (723)
Q Consensus 571 ~~v~~l~~spdg-~~l~~-----s~dg~----I~vwd~~~~~~--~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~ 638 (723)
....++.||... ..+.+ +.+|. -.+|+...++. +..... .....+.+++++|+...++.|+.||.|.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEE
Confidence 345677777643 33333 23443 35677654432 111111 3477899999999999999999999999
Q ss_pred EEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCC
Q 004924 639 VFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 639 iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
+||...+.-... ...+.++.++||| +|.++++|+..|.+.+||..-+
T Consensus 285 LyD~~~~~t~~~------------ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 285 LYDTTRGVTLLA------------KAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCCeeeee------------eecccceEEEEcC-CCcEEEEEcCCceEEEEEeecC
Confidence 999987743222 1234467999999 8999999999999999998654
No 337
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00048 Score=70.00 Aligned_cols=91 Identities=12% Similarity=0.109 Sum_probs=76.6
Q ss_pred EEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCC-CEEEE
Q 004924 460 ISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL-NVLVS 536 (723)
Q Consensus 460 I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg-~~l~s 536 (723)
+++.+..+.+....+.++...|..++|+|.. .+..++.+..|+|.|+++...+..+..+ ..+++++|.-|. .++..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 6666666666666667888899999999987 7889999999999999999888888877 789999998866 45777
Q ss_pred EeCCCcEEEEeCCCC
Q 004924 537 SGADAQLCVWDAVGW 551 (723)
Q Consensus 537 ~s~dg~I~vwd~~~~ 551 (723)
|...|.|.+||++..
T Consensus 254 Gl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQP 268 (463)
T ss_pred eccCceEEEEEccCC
Confidence 778999999999874
No 338
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.92 E-value=0.0025 Score=69.22 Aligned_cols=220 Identities=17% Similarity=0.165 Sum_probs=114.3
Q ss_pred CCeEEEEEe--CCEEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEcC
Q 004924 440 DSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG 517 (723)
Q Consensus 440 ~~V~~v~~s--~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~ 517 (723)
.....+.++ |++++++++|.-.++.....+.... +....++|.+.+.+|+-...+.|.++.--+.+..+.+..
T Consensus 33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~ 107 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKL 107 (443)
T ss_dssp S--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----
T ss_pred cCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcC
Confidence 345678888 8888888899999998544443322 222367898866888877788999964222222223321
Q ss_pred cCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEE
Q 004924 518 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYE 597 (723)
Q Consensus 518 ~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd 597 (723)
...+..+-. |..|...+.+ .|.+||..++.. +..+.. .+|..+.|+++|.+++...+..+.+++
T Consensus 108 -~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~-----i~~i~v------~~vk~V~Ws~~g~~val~t~~~i~il~ 171 (443)
T PF04053_consen 108 -PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKL-----IRRIDV------SAVKYVIWSDDGELVALVTKDSIYILK 171 (443)
T ss_dssp -SS-EEEEE----SSSEEEEETT-EEEEE-TTT--E-----EEEESS-------E-EEEEE-TTSSEEEEE-S-SEEEEE
T ss_pred -CcccceEEc---CcEEEEECCC-CEEEEEhhHcce-----eeEEec------CCCcEEEEECCCCEEEEEeCCeEEEEE
Confidence 122333322 7777766644 899999998643 332221 348899999999999987778888887
Q ss_pred CCCC-----------ceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCcc
Q 004924 598 APTL-----------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 666 (723)
Q Consensus 598 ~~~~-----------~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v 666 (723)
.... .....+.. -...|.+.+|..| -++++... .|+. +-.|+.- ++.. -+.++
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E--~~~~IkSg~W~~d-~fiYtT~~--~lkY--l~~Ge~~-~i~~--------ld~~~ 235 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHE--ISERIKSGCWVED-CFIYTTSN--HLKY--LVNGETG-IIAH--------LDKPL 235 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEE--E-S--SEEEEETT-EEEEE-TT--EEEE--EETTEEE-EEEE---------SS--
T ss_pred ecchhcccccccCchhceEEEEE--ecceeEEEEEEcC-EEEEEcCC--eEEE--EEcCCcc-eEEE--------cCCce
Confidence 6433 01112210 1456778888755 44444432 5655 3334321 1110 14456
Q ss_pred ceEEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 667 YPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 667 ~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
+ =+.+.| ..+.+.....|+.|..+.+...+
T Consensus 236 y--llgy~~-~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 236 Y--LLGYLP-KENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp E--EEEEET-TTTEEEEE-TT--EEEEE--HHH
T ss_pred E--EEEEEc-cCCEEEEEECCCCEEEEEECHHH
Confidence 6 455666 55788888899999888876543
No 339
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.92 E-value=0.0053 Score=65.49 Aligned_cols=266 Identities=18% Similarity=0.161 Sum_probs=142.9
Q ss_pred eCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEeCCcE
Q 004924 383 SHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKI 460 (723)
Q Consensus 383 spdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~sdg~I 460 (723)
||||++++.... .-..|.-. ......++|.+++....... ....+....|+ |+.++...++.|
T Consensus 1 S~d~~~~l~~~~--~~~~~r~s----------~~~~y~i~d~~~~~~~~l~~---~~~~~~~~~~sP~g~~~~~v~~~nl 65 (353)
T PF00930_consen 1 SPDGKFVLFATN--YTKQWRHS----------FKGDYYIYDIETGEITPLTP---PPPKLQDAKWSPDGKYIAFVRDNNL 65 (353)
T ss_dssp -TTSSEEEEEEE--EEEESSSE----------EEEEEEEEETTTTEEEESS----EETTBSEEEE-SSSTEEEEEETTEE
T ss_pred CCCCCeEEEEEC--cEEeeeec----------cceeEEEEecCCCceEECcC---CccccccceeecCCCeeEEEecCce
Confidence 689998877654 22233211 11113456666666554322 24567888999 899999999999
Q ss_pred EEEEcCCCcEEEEEe-CC----------------CCCeEEEEEcCCC-eEEEEECC-C----------------------
Q 004924 461 SIFSLETFQTLATFA-NP----------------PPIATYFILLPQD-LFAFGFDD-S---------------------- 499 (723)
Q Consensus 461 ~vwd~~~~~~~~~~~-~~----------------~~~v~~l~~~p~~-~l~sgs~d-g---------------------- 499 (723)
.+++..+++..+.-. +. -+.-..+-|+||+ +||....| .
T Consensus 66 y~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~ 145 (353)
T PF00930_consen 66 YLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVES 145 (353)
T ss_dssp EEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEE
T ss_pred EEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccc
Confidence 999988774433221 20 1122577899999 77654322 1
Q ss_pred -------------cEEEEeCCCCcEEE--EE---cCcCCcEEEEEEcCCCCEEEEEe--CCC---cEEEEeCCCCceeec
Q 004924 500 -------------SILVHCPCTKKTKA--KL---KGHQNRITCLAYSLSLNVLVSSG--ADA---QLCVWDAVGWKKLCS 556 (723)
Q Consensus 500 -------------~I~iwd~~~~~~~~--~l---~~~~~~i~~l~~spdg~~l~s~s--~dg---~I~vwd~~~~~~~~~ 556 (723)
.+.|+|+.+++... .. ......+..+.|.+++..++..- .+. .+.++|..++.....
T Consensus 146 ~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~ 225 (353)
T PF00930_consen 146 IRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVV 225 (353)
T ss_dssp EE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEE
T ss_pred cccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEE
Confidence 23344554443321 11 12345677899999988444333 332 366778876543211
Q ss_pred eeeeeeecCCCCCCCCeEEEEEc-cCCCEEEE-E-cCC--cEEEEECCCCceeEEecCCCCCCCeEE-EEEeeCCcEEE-
Q 004924 557 KFLHSFQTGLVPETTIVNHIQFH-PDQIHLLS-I-HEG--QIDVYEAPTLNHTSQLVPDKMDLPITY-ATYSCDGKCIY- 629 (723)
Q Consensus 557 ~~l~~~~~~~~~~~~~v~~l~~s-pdg~~l~~-s-~dg--~I~vwd~~~~~~~~~~~~~~h~~~v~~-l~~spdg~~l~- 629 (723)
......+-. ..-....+. +++..++. + .+| .|++++...+.. ..+.. ..-.|.. +.++++++.|+
T Consensus 226 --~~e~~~~Wv---~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~--G~~~V~~i~~~d~~~~~iyf 297 (353)
T PF00930_consen 226 --LEETSDGWV---DVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTS--GDWEVTSILGWDEDNNRIYF 297 (353)
T ss_dssp --EEEESSSSS---SSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS---SSS-EEEEEEEECTSSEEEE
T ss_pred --EEecCCcce---eeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-ecccc--CceeecccceEcCCCCEEEE
Confidence 111111111 122355554 77766654 4 565 577778766653 34433 2556755 67888877665
Q ss_pred EEeCC----CcEEEEECC-CCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEE
Q 004924 630 VSCKS----GHVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 683 (723)
Q Consensus 630 sgs~d----g~I~iwd~~-~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las 683 (723)
++..+ ..|+.-++. .+. ...+.... + .. ..+.||| ++++++-
T Consensus 298 ~a~~~~p~~r~lY~v~~~~~~~-~~~LT~~~----~----~~--~~~~~Sp-dg~y~v~ 344 (353)
T PF00930_consen 298 TANGDNPGERHLYRVSLDSGGE-PKCLTCED----G----DH--YSASFSP-DGKYYVD 344 (353)
T ss_dssp EESSGGTTSBEEEEEETTETTE-EEESSTTS----S----TT--EEEEE-T-TSSEEEE
T ss_pred EecCCCCCceEEEEEEeCCCCC-eEeccCCC----C----Cc--eEEEECC-CCCEEEE
Confidence 45442 356666777 444 45554321 1 11 3899999 7777654
No 340
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.91 E-value=0.0039 Score=66.76 Aligned_cols=270 Identities=11% Similarity=0.095 Sum_probs=139.0
Q ss_pred ceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEE
Q 004924 376 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSA 455 (723)
Q Consensus 376 ~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~ 455 (723)
.|.+++|+++..-|+.|...|.|.||.+........+.. +.-.+..... . .|.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~----~~~~~~~~~~----~---~~~---------------- 55 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQ----PPDLDYNFRR----F---SLN---------------- 55 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE----------------------S---------GG----------------
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCC----CcccCccccc----c---ccc----------------
Confidence 588999999988899999999999999875433000000 0000000000 0 000
Q ss_pred eCCcEEEEEcCC--------C-cEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEE--cC------c
Q 004924 456 SGGKISIFSLET--------F-QTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL--KG------H 518 (723)
Q Consensus 456 sdg~I~vwd~~~--------~-~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l--~~------~ 518 (723)
++.-.+-|+.. | ....-+....+.|++++.+.-|++|+|..+|.+.|.|++....+..- .. .
T Consensus 56 -~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~ 134 (395)
T PF08596_consen 56 -NSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSS 134 (395)
T ss_dssp -GSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS-
T ss_pred -CCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeecccccccccccc
Confidence 01111122211 1 12233445578999999987779999999999999999887777552 21 2
Q ss_pred CCcEEEEEEcC-----CC---CEEEEEeCCCcEEEEeCCC--CceeeceeeeeeecCCCCCCCCeEEEE-EccC------
Q 004924 519 QNRITCLAYSL-----SL---NVLVSSGADAQLCVWDAVG--WKKLCSKFLHSFQTGLVPETTIVNHIQ-FHPD------ 581 (723)
Q Consensus 519 ~~~i~~l~~sp-----dg---~~l~s~s~dg~I~vwd~~~--~~~~~~~~l~~~~~~~~~~~~~v~~l~-~spd------ 581 (723)
...|+++.|.. |+ -.+++|+..|.+.+|.+.- +......... ....+. +.|..+. ++.+
T Consensus 135 ~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~-~~~~~~---~~i~~I~~i~~~~G~~a~ 210 (395)
T PF08596_consen 135 SSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAG-ATTNHD---SPILSIIPINADTGESAL 210 (395)
T ss_dssp ---EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEE-EE--SS-------EEEEEETTT--B-B
T ss_pred ccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEee-ccccCC---CceEEEEEEECCCCCccc
Confidence 34677888852 33 3688999999999998751 1111111111 111222 4454444 3211
Q ss_pred ---------------CCEEEEEcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEe-----eCCcEEEEEeCCCcEEEEE
Q 004924 582 ---------------QIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS-----CDGKCIYVSCKSGHVKVFD 641 (723)
Q Consensus 582 ---------------g~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~s-----pdg~~l~sgs~dg~I~iwd 641 (723)
..+++++.+..++++...+.+..+.... .......+++- ..+..|++-..+|.|++|.
T Consensus 211 At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~--~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~S 288 (395)
T PF08596_consen 211 ATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFD--DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYS 288 (395)
T ss_dssp -BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-S--S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEE
T ss_pred CchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeec--cccccceEEEEeecccCCceEEEEEECCCcEEEEE
Confidence 1245567889999999988877665541 12333344552 3567888889999999999
Q ss_pred CCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEEC
Q 004924 642 TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 686 (723)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~ 686 (723)
+..-+.+..+...... ...... ...+++ +|+.++-.|.
T Consensus 289 LP~Lkei~~~~l~~~~----d~~~~~--~ssis~-~Gdi~~~~gp 326 (395)
T PF08596_consen 289 LPSLKEIKSVSLPPPL----DSRRLS--SSSISR-NGDIFYWTGP 326 (395)
T ss_dssp TTT--EEEEEE-SS-------HHHHT--T-EE-T-TS-EEEE-SS
T ss_pred CCCchHhhcccCCCcc----cccccc--ccEECC-CCCEEEEeCc
Confidence 9999888877653211 011122 455567 6776655543
No 341
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.86 E-value=0.016 Score=62.88 Aligned_cols=168 Identities=11% Similarity=0.092 Sum_probs=89.6
Q ss_pred CCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCcEEEEE-------eCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCC
Q 004924 440 DSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATF-------ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK 509 (723)
Q Consensus 440 ~~V~~v~~s-~~~l~s~s-dg~I~vwd~~~~~~~~~~-------~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~ 509 (723)
+.+.++.|+ +..|++.. ||.++++|+. |+....+ .-....+....+..+| .++++ ++.+.+.+--..
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~--~~~~~~v~n~~~ 157 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTG--NNRFYVVNNIDE 157 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCCEEEECC--CCeEEEEeCccc
Confidence 789999999 66655555 9999999986 3331111 1111122222344466 44443 444544432221
Q ss_pred c-EEEEEc---C-----cCC-cEEE-EEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEE
Q 004924 510 K-TKAKLK---G-----HQN-RITC-LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 578 (723)
Q Consensus 510 ~-~~~~l~---~-----~~~-~i~~-l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~ 578 (723)
. ..+.+. + +.. .... ..++.+....+....++.+.+.+-... ..+.. . +++..+++
T Consensus 158 ~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~--------~~i~~-~----~~i~~iav 224 (410)
T PF04841_consen 158 PVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF--------KQIDS-D----GPIIKIAV 224 (410)
T ss_pred cchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc--------ccccC-C----CCeEEEEE
Confidence 1 111111 1 000 0000 223444444455555555554443321 10111 1 57999999
Q ss_pred ccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeC
Q 004924 579 HPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 624 (723)
Q Consensus 579 spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spd 624 (723)
||+|+++|. ..+|.+.+.+..-.+....+... .......+.|.-+
T Consensus 225 Spng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 225 SPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD-SKSPPKQMAWCGN 270 (410)
T ss_pred CCCCCEEEEEECCCCEEEEECcccceeEEeecC-cCCCCcEEEEECC
Confidence 999999998 68899999987666666666542 2345567777644
No 342
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.83 E-value=0.00037 Score=77.61 Aligned_cols=180 Identities=15% Similarity=0.144 Sum_probs=126.6
Q ss_pred CCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccce
Q 004924 336 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 415 (723)
Q Consensus 336 dg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~ 415 (723)
++..++.|+-...+..+|+.+. ...+...+ ....|.-+. .+++++.+|...|+|.+-|..+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~---~e~r~~~v----~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~--------- 207 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTE---KETRTTNV----SASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSF--------- 207 (1118)
T ss_pred CCcceeecchhhheeeeecccc---eeeeeeec----cCCceEEEE--ecCcEEEeecccceEEeecCCcC---------
Confidence 4566788888888888888742 22222221 233454444 46788999999999988776532
Q ss_pred eeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-C---------CcEEEEEcCCCcEEEEEeCCCCCeEEEE
Q 004924 416 NMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-G---------GKISIFSLETFQTLATFANPPPIATYFI 485 (723)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-d---------g~I~vwd~~~~~~~~~~~~~~~~v~~l~ 485 (723)
+.++.+. .|++.|.++...|+.|++|| . .-|+|||++..+.+.-+.-+.++ .-+.
T Consensus 208 ------------~~iht~~--aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flr 272 (1118)
T KOG1275|consen 208 ------------ETIHTFD--AHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLR 272 (1118)
T ss_pred ------------ceeeeee--ccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhh
Confidence 2222222 69999998888899999987 3 24889999877666555433333 4567
Q ss_pred EcCCC--eEEEEECCCcEEEEeCCC-Cc---EEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 004924 486 LLPQD--LFAFGFDDSSILVHCPCT-KK---TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 548 (723)
Q Consensus 486 ~~p~~--~l~sgs~dg~I~iwd~~~-~~---~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~ 548 (723)
|+|.= .+++++..|...+.|..+ +. -+..+....+.+..+.++++|..++.|..+|.|.+|.-
T Consensus 273 f~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 273 FHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred hcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 88876 889999999999998332 22 23334445566999999999999999999999999973
No 343
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.81 E-value=6.1e-06 Score=87.98 Aligned_cols=204 Identities=13% Similarity=0.114 Sum_probs=131.1
Q ss_pred CCeEEEEEcCCC---eEEEEECCCcEEEEeCCCCcEE--EEEcCcCCcEEEEEEcC-CCCEEEEEe----CCCcEEEEeC
Q 004924 479 PIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTK--AKLKGHQNRITCLAYSL-SLNVLVSSG----ADAQLCVWDA 548 (723)
Q Consensus 479 ~~v~~l~~~p~~---~l~sgs~dg~I~iwd~~~~~~~--~~l~~~~~~i~~l~~sp-dg~~l~s~s----~dg~I~vwd~ 548 (723)
..+.|+++.-+. .+++|..+|.|.+-..+...-. ....++..+.++++|++ |.++|+.|- .|..+.+||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 345566655433 7889999999999887654322 33456788999999998 556677664 2567999999
Q ss_pred CCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCC-ceeEEecCCCCCCCeEEEEEee-CC
Q 004924 549 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSC-DG 625 (723)
Q Consensus 549 ~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~-~~~~~~~~~~h~~~v~~l~~sp-dg 625 (723)
.++-........ +..+.. ....+++|-.+.+.+.+| ....+.++|++.. .....+ ....+..+..+| .+
T Consensus 137 ~s~ltvPke~~~-fs~~~l---~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv----nTk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 137 NSLLTVPKESPL-FSSSTL---DGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV----NTKYVQGITVDPFSP 208 (783)
T ss_pred ccccCCCccccc-cccccc---cCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh----hhhhcccceecCCCC
Confidence 885211111111 222222 456689999888888886 6679999999732 222222 145566788888 77
Q ss_pred cEEEEEeCCCcEEEEEC-CCC-cEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECC-CcEEEEecCC
Q 004924 626 KCIYVSCKSGHVKVFDT-STL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-GRVHVIEPLE 697 (723)
Q Consensus 626 ~~l~sgs~dg~I~iwd~-~~~-~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D-g~v~iWd~~~ 697 (723)
.|+++.. ||.|.+||. .+- .++..+..... ...-....++|.|.....+++.+.| ++|+.+++..
T Consensus 209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N------~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRNEN------KKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred Cceeccc-cCceeeccchhhhccHHHHHhhCCC------CcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 7877766 999999994 221 11111111000 1111255999999777788888865 6899999754
No 344
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.79 E-value=0.012 Score=62.80 Aligned_cols=242 Identities=12% Similarity=0.049 Sum_probs=134.3
Q ss_pred ccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCC--------------CCceEEEEEeCCCCEEEEEECC
Q 004924 330 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSF--------------GGRVVRLIYSHSGDFLVALTQT 395 (723)
Q Consensus 330 ~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h--------------~~~V~~l~fspdg~~las~s~d 395 (723)
...+||+|+.+|... ++.+.+++... +...+++..|..+ -+.-..+.|||||++||....|
T Consensus 47 ~~~~sP~g~~~~~v~-~~nly~~~~~~----~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 47 DAKWSPDGKYIAFVR-DNNLYLRDLAT----GQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp EEEE-SSSTEEEEEE-TTEEEEESSTT----SEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred cceeecCCCeeEEEe-cCceEEEECCC----CCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 344999999999998 67888888763 3444443322000 1123568899999999998775
Q ss_pred -CcEEEEec---cCC-c-c---------cccccceeeeeEEEecCCCeeeeeccC---CCCCCCeEEEEEe--CCEEEEE
Q 004924 396 -ATHKLWKW---QSN-K-Q---------SLEEENVNMESQLYQPSSKLVMTNDIA---ADPKDSISCFALR--GSHLFSA 455 (723)
Q Consensus 396 -g~i~iWd~---~~~-~-~---------~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~V~~v~~s--~~~l~s~ 455 (723)
..|..+.+ ... . . ..|.....+.+.+++..+++....... ......+..+.|. +..++..
T Consensus 122 ~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~ 201 (353)
T PF00930_consen 122 EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQ 201 (353)
T ss_dssp -TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEE
T ss_pred CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEE
Confidence 34444332 221 1 1 234444556678889888875432221 1235567889998 4424443
Q ss_pred e---C---CcEEEEEcCCCcEEEEEe-CCCCCe---EEEEEc-CCC--eEEEEECCC--cEEEEeCCCCcEEEEEcCcCC
Q 004924 456 S---G---GKISIFSLETFQTLATFA-NPPPIA---TYFILL-PQD--LFAFGFDDS--SILVHCPCTKKTKAKLKGHQN 520 (723)
Q Consensus 456 s---d---g~I~vwd~~~~~~~~~~~-~~~~~v---~~l~~~-p~~--~l~sgs~dg--~I~iwd~~~~~~~~~l~~~~~ 520 (723)
- + ..+.++|..++.+...+. .....| ....+. +++ .+.....+| +|.+++..++. .+.+.....
T Consensus 202 ~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~ 280 (353)
T PF00930_consen 202 WLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDW 280 (353)
T ss_dssp EEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS
T ss_pred EcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCce
Confidence 3 2 246777888776644443 122222 345554 666 555556777 56667766655 446665566
Q ss_pred cEEE-EEEcCCCCEEE-EEeCC----CcEEEEeCC-CCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE
Q 004924 521 RITC-LAYSLSLNVLV-SSGAD----AQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 587 (723)
Q Consensus 521 ~i~~-l~~spdg~~l~-s~s~d----g~I~vwd~~-~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~ 587 (723)
.|.. +.|+++++.+. ++..+ ..+...++. ++. +..+.... ..-..+.|||+|++++.
T Consensus 281 ~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~------~~~LT~~~----~~~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 281 EVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE------PKCLTCED----GDHYSASFSPDGKYYVD 344 (353)
T ss_dssp -EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE------EEESSTTS----STTEEEEE-TTSSEEEE
T ss_pred eecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC------eEeccCCC----CCceEEEECCCCCEEEE
Confidence 6754 67888877655 44442 245555666 432 22122221 12258999999999986
No 345
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.78 E-value=2.1e-05 Score=83.96 Aligned_cols=196 Identities=13% Similarity=0.170 Sum_probs=129.3
Q ss_pred CCCCeEEEEEe---C-CEEEEEe-CCcEEEEEcCCCcE--EEEEeCCCCCeEEEEEcCCC--eEEEEE----CCCcEEEE
Q 004924 438 PKDSISCFALR---G-SHLFSAS-GGKISIFSLETFQT--LATFANPPPIATYFILLPQD--LFAFGF----DDSSILVH 504 (723)
Q Consensus 438 h~~~V~~v~~s---~-~~l~s~s-dg~I~vwd~~~~~~--~~~~~~~~~~v~~l~~~p~~--~l~sgs----~dg~I~iw 504 (723)
....+.|+++. + ..+++|. +|.|.+-.+....- .....++...+++++|++-+ .||+|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 34567788877 3 3567777 89999988754322 22344677889999999976 777764 35579999
Q ss_pred eCCCC--cEEE--EEcC-cCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEc
Q 004924 505 CPCTK--KTKA--KLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 579 (723)
Q Consensus 505 d~~~~--~~~~--~l~~-~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~s 579 (723)
|+.++ .+.. .|.+ ......+++|..+.+.+.+|...+.+.++|++.... ....+. + ..+..+.+.
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svn------T---k~vqG~tVd 204 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVN------T---KYVQGITVD 204 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhh------h---hhcccceec
Confidence 99876 2222 2222 334556888888888999999999999999984210 011111 1 356678888
Q ss_pred c-CCCEEEEEcCCcEEEEEC-CCCc-eeEEecCCC--CCCCeEEEEEeeCCc-EEEEEeCC-CcEEEEECC
Q 004924 580 P-DQIHLLSIHEGQIDVYEA-PTLN-HTSQLVPDK--MDLPITYATYSCDGK-CIYVSCKS-GHVKVFDTS 643 (723)
Q Consensus 580 p-dg~~l~~s~dg~I~vwd~-~~~~-~~~~~~~~~--h~~~v~~l~~spdg~-~l~sgs~d-g~I~iwd~~ 643 (723)
| .+.++++..||.|.+||. ++-+ ++..+.... ....+..++|+|... .+++.+.| ++|+.+++.
T Consensus 205 p~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 205 PFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 8 778999988999999993 3222 222221110 123488999998543 44555544 889999975
No 346
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.77 E-value=0.021 Score=61.97 Aligned_cols=184 Identities=15% Similarity=0.077 Sum_probs=100.7
Q ss_pred cEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEE-------cCcCCcEEEEEEcCCC
Q 004924 459 KISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL-------KGHQNRITCLAYSLSL 531 (723)
Q Consensus 459 ~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l-------~~~~~~i~~l~~spdg 531 (723)
.|.||+.. |+.+..+.-..+.+.++.|..+..|++-..||.+++||+. |+....+ ......+....+..+|
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC
Confidence 58888864 7777777644488999999886666677789999999986 4441111 1111222223333355
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCC--CCCeEE-EEEccCCCEEEE-EcCCcEEEEECCCCceeEEe
Q 004924 532 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE--TTIVNH-IQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 607 (723)
Q Consensus 532 ~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~--~~~v~~-l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~ 607 (723)
++.-..++.+.+..--.... ....+..++...... ...... ..++.+....+. +.++.+.+.+-...+. +
T Consensus 140 --ivvLt~~~~~~~v~n~~~~~-~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 140 --IVVLTGNNRFYVVNNIDEPV-KLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred --EEEECCCCeEEEEeCccccc-hhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 33334455554442222110 001111111110000 001111 234444444333 4555666444332211 2
Q ss_pred cCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeec
Q 004924 608 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 653 (723)
Q Consensus 608 ~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 653 (723)
. ..+++..+++||+|+++|.-..+|.+.+....-.+....+..
T Consensus 214 ~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~ 256 (410)
T PF04841_consen 214 D---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT 256 (410)
T ss_pred c---CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence 1 256899999999999999999999999998776666665543
No 347
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.77 E-value=0.0013 Score=72.62 Aligned_cols=106 Identities=7% Similarity=-0.080 Sum_probs=76.0
Q ss_pred eEEEEEeCCCCEEEEEEC----CCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCE
Q 004924 377 VVRLIYSHSGDFLVALTQ----TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 451 (723)
Q Consensus 377 V~~l~fspdg~~las~s~----dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~ 451 (723)
-+-.+|+|...++|.++. .|+|.||--. |+.-+.. .-.-.+++++|+ .+.
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfadt----------------------GEPqr~V---t~P~hatSLCWHpe~~ 72 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFADT----------------------GEPQRDV---TYPVHATSLCWHPEEF 72 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEecC----------------------CCCCccc---ccceehhhhccChHHH
Confidence 345678999988888775 4677776422 1111100 011224568999 444
Q ss_pred -EEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCC
Q 004924 452 -LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC 507 (723)
Q Consensus 452 -l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~ 507 (723)
|+.|- -|.+.+|...+.+.......|..++..+.|+++| .++++..-|.|.+|...
T Consensus 73 vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 73 VLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred HHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 55555 6999999988777666667899999999999999 99999999999999765
No 348
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.73 E-value=3.6e-05 Score=50.83 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=29.8
Q ss_pred chHHHHHHHHHHhhhhhhHHHHHHHhhhcccc
Q 004924 127 TKEELIYLIHQFLNEEEFKETLHKLEQETRVF 158 (723)
Q Consensus 127 ~~~evirlI~q~L~e~G~~~s~~~L~~Es~i~ 158 (723)
.+.++.++|+|||...||..|+.+|++|+++.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 57889999999999999999999999999874
No 349
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.73 E-value=0.0018 Score=70.06 Aligned_cols=178 Identities=16% Similarity=0.140 Sum_probs=109.8
Q ss_pred cEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEE---CC-CcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCE
Q 004924 459 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF---DD-SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 533 (723)
Q Consensus 459 ~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs---~d-g~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~ 533 (723)
.+.+-|-+ |...+.+......+..-+|+|++ .++.-+ .. ..+.++|+.+++....+. ..+.-....|+|||+.
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~ 251 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSK 251 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCE
Confidence 44444444 55555665556667778999999 444322 22 369999999886655544 2333345689999988
Q ss_pred EEEEe-CCCc--EEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E-cCC--cEEEEECCCCceeEE
Q 004924 534 LVSSG-ADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEG--QIDVYEAPTLNHTSQ 606 (723)
Q Consensus 534 l~s~s-~dg~--I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~dg--~I~vwd~~~~~~~~~ 606 (723)
++.+. .||. |.++|+.++. +..+.... +.-..-.|+|||++++- + ..| .|.++|.+.+.. ..
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~------~~~Lt~~~----gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~r 320 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKN------LPRLTNGF----GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TR 320 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCc------ceecccCC----ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eE
Confidence 76554 4554 6677887743 12122221 22336789999999986 3 334 588888866654 33
Q ss_pred ecCCCCCCCeEEEEEeeCCcEEEEEeC-CCc--EEEEECCCCcEEEEe
Q 004924 607 LVPDKMDLPITYATYSCDGKCIYVSCK-SGH--VKVFDTSTLELRCQI 651 (723)
Q Consensus 607 ~~~~~h~~~v~~l~~spdg~~l~sgs~-dg~--I~iwd~~~~~~~~~~ 651 (723)
+... ...-....|||||++++..+. +|. |.+.+..++.....+
T Consensus 321 iT~~--~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l 366 (425)
T COG0823 321 LTFS--GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL 366 (425)
T ss_pred eecc--CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc
Confidence 3332 222227889999999987664 354 667777666544444
No 350
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.70 E-value=0.0058 Score=67.46 Aligned_cols=92 Identities=21% Similarity=0.125 Sum_probs=66.6
Q ss_pred CcEEEEECCC-----CceeEEecCCCCCCCeEEEEEeeCCcEEEEEeC-CCcEEEEECCCCcE------------EEEee
Q 004924 591 GQIDVYEAPT-----LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLEL------------RCQIN 652 (723)
Q Consensus 591 g~I~vwd~~~-----~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~-dg~I~iwd~~~~~~------------~~~~~ 652 (723)
+.|.+.|..+ .+.+..+.. ......+.+||||+++++++. ++++.|.|+.+.+. .....
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 4477777776 234444432 566788999999999886554 89999999988653 22221
Q ss_pred cccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCC
Q 004924 653 LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 653 ~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~ 697 (723)
. | ..+...+|.+ +|+...|.--|..|-.|++..
T Consensus 373 v------G-----lGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 L------G-----LGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred c------C-----CCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 1 1 2255789999 788888999999999999876
No 351
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.69 E-value=0.02 Score=59.03 Aligned_cols=185 Identities=13% Similarity=0.059 Sum_probs=111.8
Q ss_pred CCeEEEEEe--CCEEEEEeCCcEEEEEcCCCcEEEEEe-----CCCCCeEEEEEcCCCeEEEEECC------------Cc
Q 004924 440 DSISCFALR--GSHLFSASGGKISIFSLETFQTLATFA-----NPPPIATYFILLPQDLFAFGFDD------------SS 500 (723)
Q Consensus 440 ~~V~~v~~s--~~~l~s~sdg~I~vwd~~~~~~~~~~~-----~~~~~v~~l~~~p~~~l~sgs~d------------g~ 500 (723)
+.+.++..- +..|+++. ..+.+++.+++..+..+. ......+.....|+|.+..+... |.
T Consensus 66 ~~~~~~~~~d~~g~Lv~~~-~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~ 144 (307)
T COG3386 66 GGFSSGALIDAGGRLIACE-HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGS 144 (307)
T ss_pred CCcccceeecCCCeEEEEc-cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcce
Confidence 334444433 55555554 345556666665533332 11234567788899933333333 23
Q ss_pred EEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCC-CcEEEEeCCC--CceeeceeeeeeecCCCCCCCCeEEEE
Q 004924 501 ILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-AQLCVWDAVG--WKKLCSKFLHSFQTGLVPETTIVNHIQ 577 (723)
Q Consensus 501 I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~d-g~I~vwd~~~--~~~~~~~~l~~~~~~~~~~~~~v~~l~ 577 (723)
++.+|. .+..++.+..+-..-+.++||||++.++.+... +.|.-|+... +......... ...... +..-.++
T Consensus 145 lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~-~~~~~~---G~PDG~~ 219 (307)
T COG3386 145 LYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFV-DFDEEP---GLPDGMA 219 (307)
T ss_pred EEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEE-EccCCC---CCCCceE
Confidence 555554 466777776666667889999999887777654 7788887752 2221111111 111111 5666788
Q ss_pred EccCCCEEEEE-cC-CcEEEEECCCCceeEEecCCCCCCCeEEEEEe-eCCcEEEEEeC
Q 004924 578 FHPDQIHLLSI-HE-GQIDVYEAPTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSCK 633 (723)
Q Consensus 578 ~spdg~~l~~s-~d-g~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~s-pdg~~l~sgs~ 633 (723)
...+|.+.+++ .+ +.|.+|+.. |+.+..+..+ ...+++++|- |+.+.|++.+.
T Consensus 220 vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP--~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 220 VDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP--VKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EeCCCCEEEecccCCceEEEECCC-CcEEEEEECC--CCCCccceEeCCCcCEEEEEec
Confidence 88889888654 44 399999997 9998888764 4778888885 56666655443
No 352
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=97.69 E-value=0.0001 Score=70.26 Aligned_cols=83 Identities=18% Similarity=0.295 Sum_probs=70.3
Q ss_pred cchHHHHHHHHHHhhhhhhHHHHHHHhhhcccccc---------chhhHHhhhcCChHHHHHHHhhccccccCcchhH--
Q 004924 126 ETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD---------INYFREYITSGEWDNAEKYLSAFTNMNDNTYSAK-- 194 (723)
Q Consensus 126 ~~~~evirlI~q~L~e~G~~~s~~~L~~Es~i~~~---------~~~l~~~i~~G~w~~~~~~l~~l~~~~~~~~~~~-- 194 (723)
..++++++||+.||-..||.++|..+..|+|+..+ -...+.+|..|+-++|...+.++.+ ..+...
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~P---eiLd~n~~ 100 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNP---EILDTNRE 100 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhCh---HHHccchh
Confidence 58999999999999999999999999999999882 4678899999999999999988732 123333
Q ss_pred HHHHHHHHHHHHHHhhc
Q 004924 195 MFSQIQRQKYLEAVDRQ 211 (723)
Q Consensus 195 ~~~~l~~q~~le~l~~~ 211 (723)
.|+.+++|+++|++..+
T Consensus 101 l~F~Lq~q~lIEliR~~ 117 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREG 117 (228)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 45559999999999887
No 353
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.67 E-value=0.092 Score=53.95 Aligned_cols=229 Identities=14% Similarity=0.085 Sum_probs=131.3
Q ss_pred CcEEEEEcCCCcEEEEEeCCCC-------CeEEEEEcCCC-eEEEE--ECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEE
Q 004924 458 GKISIFSLETFQTLATFANPPP-------IATYFILLPQD-LFAFG--FDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 527 (723)
Q Consensus 458 g~I~vwd~~~~~~~~~~~~~~~-------~v~~l~~~p~~-~l~sg--s~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~ 527 (723)
..|.+||..+-.....+.-+.. ....++++.|| ++++. +--.+|.|.|+..++.+..+... + |...
T Consensus 67 Dvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G---C~~i 142 (342)
T PF06433_consen 67 DVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G---CWLI 142 (342)
T ss_dssp EEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S---EEEE
T ss_pred eEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C---EEEE
Confidence 3689999999887776652221 12345677788 44443 34557888898888888777532 1 1111
Q ss_pred cC-CCCEEEEEeCCCcEEEEeCC-CCceeeceeeeeeecCCCCCCCCeEEEEEccCC-CEEEEEcCCcEEEEECCCCcee
Q 004924 528 SL-SLNVLVSSGADAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLSIHEGQIDVYEAPTLNHT 604 (723)
Q Consensus 528 sp-dg~~l~s~s~dg~I~vwd~~-~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg-~~l~~s~dg~I~vwd~~~~~~~ 604 (723)
-| ....+.+.|.||.+.-..+. .|+.. ... ..++..... .....-++...+ .++..+.+|.|+--|+......
T Consensus 143 yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~-t~~F~~~~d--p~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~ 218 (342)
T PF06433_consen 143 YPSGNRGFSMLCGDGSLLTVTLDADGKEA-QKS-TKVFDPDDD--PLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAK 218 (342)
T ss_dssp EEEETTEEEEEETTSCEEEEEETSTSSEE-EEE-EEESSTTTS---B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEE
T ss_pred EecCCCceEEEecCCceEEEEECCCCCEe-Eee-ccccCCCCc--ccccccceECCCCeEEEEecCCEEEEEeccCCccc
Confidence 22 22457888899999888887 44433 221 112222210 122344555444 5666789999999888654421
Q ss_pred --EEecCCC--------CCCCeEEEEEeeCCcEEEEEeC---C-------CcEEEEECCCCcEEEEeecccccCCCCccC
Q 004924 605 --SQLVPDK--------MDLPITYATYSCDGKCIYVSCK---S-------GHVKVFDTSTLELRCQINLTAYAQPGTISL 664 (723)
Q Consensus 605 --~~~~~~~--------h~~~v~~l~~spdg~~l~sgs~---d-------g~I~iwd~~~~~~~~~~~~~~~~~~g~~~~ 664 (723)
..+.... ..+.-.-+++++..+.|++.-. + ..|.++|+.+++.+.++.. .+
T Consensus 219 ~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---------~~ 289 (342)
T PF06433_consen 219 FGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---------EH 289 (342)
T ss_dssp EEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---------EE
T ss_pred ccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---------CC
Confidence 1121100 0111223677765555554221 1 2588899999999999875 23
Q ss_pred ccceEEEEEecCCCCEEEEEE-CCCcEEEEecCCCceeeecC
Q 004924 665 ELYPLVIAAHPLEPNRIALGL-TNGRVHVIEPLESEVEWGKL 705 (723)
Q Consensus 665 ~v~~~~v~~sp~d~~~las~s-~Dg~v~iWd~~~~~~~w~~~ 705 (723)
.+. +++.+.++..+|.+.+ .++.+.|||..+|+..-...
T Consensus 290 ~~~--Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 290 PID--SIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EES--EEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred ccc--eEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 344 7777875555776554 57999999999998655443
No 354
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.65 E-value=0.046 Score=54.47 Aligned_cols=203 Identities=12% Similarity=0.055 Sum_probs=105.0
Q ss_pred cCCCCCCCceEEEEEeCCCCEEEEEEC-CCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEE
Q 004924 368 LPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 446 (723)
Q Consensus 368 l~~~~h~~~V~~l~fspdg~~las~s~-dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 446 (723)
+++ -...+..++|+|+.+.|++... .+.|...+. +|.++......+ .+..-.|+
T Consensus 17 l~g--~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~----------------------~G~vlr~i~l~g-~~D~EgI~ 71 (248)
T PF06977_consen 17 LPG--ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL----------------------DGKVLRRIPLDG-FGDYEGIT 71 (248)
T ss_dssp -TT----S-EEEEEEETTTTEEEEEETTTTEEEEEET----------------------T--EEEEEE-SS--SSEEEEE
T ss_pred CCC--ccCCccccEEcCCCCeEEEEECCCCEEEEEcC----------------------CCCEEEEEeCCC-CCCceeEE
Confidence 554 4567999999998776666655 455544332 233333322222 45677888
Q ss_pred Ee-CCEEEEEe--CCcEEEEEcCCCc------EEEEEe-----CCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCC---
Q 004924 447 LR-GSHLFSAS--GGKISIFSLETFQ------TLATFA-----NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT--- 508 (723)
Q Consensus 447 ~s-~~~l~s~s--dg~I~vwd~~~~~------~~~~~~-----~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~--- 508 (723)
+. ++.++... ++.+.++++.... ....+. .++..+-.++|+|.+ .|+++-...-..+|.+..
T Consensus 72 y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~ 151 (248)
T PF06977_consen 72 YLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPG 151 (248)
T ss_dssp E-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-
T ss_pred EECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccC
Confidence 88 56666666 7889988883311 112222 245568899999988 666676666666666543
Q ss_pred CcEEEEE--------cCcCCcEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEc
Q 004924 509 KKTKAKL--------KGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 579 (723)
Q Consensus 509 ~~~~~~l--------~~~~~~i~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~s 579 (723)
...+... ......+.+++++|.. .+++.......|..+|.. |+......+..-..+-.......-.++|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G~~~~~~~L~~g~~gl~~~~~QpEGIa~d 230 (248)
T PF06977_consen 152 GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-GRVVSSLSLDRGFHGLSKDIPQPEGIAFD 230 (248)
T ss_dssp SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-
T ss_pred ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC-CCEEEEEEeCCcccCcccccCCccEEEEC
Confidence 2222111 1134567899999954 556666677888889944 44333333321000000001357789999
Q ss_pred cCCCEEEEEcCCcEEEE
Q 004924 580 PDQIHLLSIHEGQIDVY 596 (723)
Q Consensus 580 pdg~~l~~s~dg~I~vw 596 (723)
++|+..+++.-+..++|
T Consensus 231 ~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 231 PDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp TT--EEEEETTTEEEEE
T ss_pred CCCCEEEEcCCceEEEe
Confidence 99988888876666655
No 355
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.65 E-value=0.00054 Score=74.57 Aligned_cols=151 Identities=13% Similarity=0.093 Sum_probs=99.2
Q ss_pred EEEEeCCEEEEEe-CCcEEEEEcCCCcEEEEEe-CCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEE-----EE
Q 004924 444 CFALRGSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA-----KL 515 (723)
Q Consensus 444 ~v~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~-~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~-----~l 515 (723)
|++-++++++.|+ -|.+.+|+-..++....-. +..+.+..+..+++. ++|.|+..|.|.++.+..+.+.. ..
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~ 119 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPC 119 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccc
Confidence 3333389999999 7999999987766543322 344556667788888 99999999999999887643221 11
Q ss_pred -cCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEE
Q 004924 516 -KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQID 594 (723)
Q Consensus 516 -~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~ 594 (723)
+.|...|++++|++++..+++|...|+|..-.+++. .......+.+.... +.|..+.... .+++++.--.-.
T Consensus 120 d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~-~~~~~~~q~il~~d----s~IVQlD~~q--~~LLVStl~r~~ 192 (726)
T KOG3621|consen 120 DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSR-QAFLSKSQEILSED----SEIVQLDYLQ--SYLLVSTLTRCI 192 (726)
T ss_pred cccCCceEEEEEecccccEEeecCCCceEEEEEechh-hhhccccceeeccC----cceEEeeccc--ceehHhhhhhhh
Confidence 237889999999999999999999999988877661 11111122222221 5666666552 344443323344
Q ss_pred EEECCCC
Q 004924 595 VYEAPTL 601 (723)
Q Consensus 595 vwd~~~~ 601 (723)
+++++.+
T Consensus 193 Lc~tE~e 199 (726)
T KOG3621|consen 193 LCQTEAE 199 (726)
T ss_pred eeecchh
Confidence 5565543
No 356
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.62 E-value=0.03 Score=55.73 Aligned_cols=198 Identities=16% Similarity=0.114 Sum_probs=110.6
Q ss_pred CCCCCeEEEEEe--CCEEEEEe--CCcEEEEEcCCCcEEEEEeCC-CCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCC-
Q 004924 437 DPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANP-PPIATYFILLPQD-LFAFGFDDSSILVHCPCTK- 509 (723)
Q Consensus 437 ~h~~~V~~v~~s--~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~-~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~- 509 (723)
+-...++.++|+ .+.|++.. .+.|..++. +|+.++.+.-. .+..-.+++..++ ++++.-.++.+.++++...
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 445569999999 56666655 577877886 58888887632 3567788998888 5555556889999887332
Q ss_pred -c----EEEEEc-----CcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCC---Cceeeceeeeeee--cCCCCCCCCeE
Q 004924 510 -K----TKAKLK-----GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG---WKKLCSKFLHSFQ--TGLVPETTIVN 574 (723)
Q Consensus 510 -~----~~~~l~-----~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~---~~~~~~~~l~~~~--~~~~~~~~~v~ 574 (723)
. ....+. .+...+-.++|+|.++.|+++-...-..+|.++. ...........+. .... ..+.
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~S 174 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV---RDLS 174 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S---S---
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccccee---cccc
Confidence 1 112221 2445688999999988888887777777776654 1111100001011 1111 5678
Q ss_pred EEEEccCCCEEEE-E-cCCcEEEEECCCCceeEEecCCC--C-----CCCeEEEEEeeCCcEEEEEeCCCcEEEE
Q 004924 575 HIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDK--M-----DLPITYATYSCDGKCIYVSCKSGHVKVF 640 (723)
Q Consensus 575 ~l~~spdg~~l~~-s-~dg~I~vwd~~~~~~~~~~~~~~--h-----~~~v~~l~~spdg~~l~sgs~dg~I~iw 640 (723)
+++++|....++. + .+..|..+| .+|+.+..+.... | -...-.++|.++|+ |+..++-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence 9999998766555 6 667899999 4788766554321 1 13577899999986 4445566766665
No 357
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.56 E-value=0.0032 Score=68.09 Aligned_cols=180 Identities=18% Similarity=0.115 Sum_probs=109.3
Q ss_pred CCCeEEEEEe--CCEEEEEe---C--CcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC--eEEEEECCC--cEEEEeCC
Q 004924 439 KDSISCFALR--GSHLFSAS---G--GKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDS--SILVHCPC 507 (723)
Q Consensus 439 ~~~V~~v~~s--~~~l~s~s---d--g~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg--~I~iwd~~ 507 (723)
...+..-+|+ +..++... . ..+.++++.+++....... .+.-...+|+||| .+++...|| .|+++|+.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~-~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF-NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc-CCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 3445556676 44444333 2 3589999998876555541 2222356899999 555666666 57777888
Q ss_pred CCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCE
Q 004924 508 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 584 (723)
Q Consensus 508 ~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~-dg--~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~ 584 (723)
+++..+ +....+.-..-.|+|||+.++-.+. .| .|.++|..++.. ..+. ... ..-..-.|+|||++
T Consensus 271 ~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~riT--~~~-----~~~~~p~~SpdG~~ 339 (425)
T COG0823 271 GKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV---TRLT--FSG-----GGNSNPVWSPDGDK 339 (425)
T ss_pred CCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---eEee--ccC-----CCCcCccCCCCCCE
Confidence 776333 5433333346789999999887664 34 366667766432 1111 111 12227789999999
Q ss_pred EEE-E-cCCc--EEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeC
Q 004924 585 LLS-I-HEGQ--IDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 633 (723)
Q Consensus 585 l~~-s-~dg~--I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~ 633 (723)
|+. + .+|. |.+.|+.++...+.+.. .......+|.|+|+.++..+.
T Consensus 340 i~~~~~~~g~~~i~~~~~~~~~~~~~lt~---~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLASGGKIRILTS---TYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred EEEEeccCCceeeEEeccCCCCcEEEccc---cccCCCCCcCCCCceEEEecc
Confidence 997 4 3455 77777766654444432 344446778888887775443
No 358
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.047 Score=58.77 Aligned_cols=203 Identities=17% Similarity=0.134 Sum_probs=139.9
Q ss_pred EEEEEe--CCEEEEEe--CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEEC---CCcEEEEeCCCCcEEEE
Q 004924 443 SCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCTKKTKAK 514 (723)
Q Consensus 443 ~~v~~s--~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~---dg~I~iwd~~~~~~~~~ 514 (723)
..++.+ +..++... ++.|.+.|..+.+......... ....++++|++ .+.++.. ++++.+.|..+++.+..
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 345555 55444444 6899999988777766665322 45588999999 5555544 68999999998888877
Q ss_pred EcCcCCcEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE--cC-
Q 004924 515 LKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE- 590 (723)
Q Consensus 515 l~~~~~~i~~l~~spdg~~l~s~s-~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s--~d- 590 (723)
...-..+ ..++++|+|..++.+. .++.|.+.|..+..............+ .....+.++|+|..+.+. .+
T Consensus 156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-----~~P~~i~v~~~g~~~yV~~~~~~ 229 (381)
T COG3391 156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-----TGPAGIAVDPDGNRVYVANDGSG 229 (381)
T ss_pred EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-----CCCceEEECCCCCEEEEEeccCC
Confidence 5443344 8899999999766655 788999999776432210000001111 345689999999987763 22
Q ss_pred -CcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeC-CCcEEEEECCCCcEEEEeec
Q 004924 591 -GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINL 653 (723)
Q Consensus 591 -g~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~-dg~I~iwd~~~~~~~~~~~~ 653 (723)
+.+...|..++.....-...... ....+..+|+|.++++... .+.+.+.|..+.........
T Consensus 230 ~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 230 SNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred CceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 58999999888776552222223 5667899999999988754 48999999999887776543
No 359
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.42 E-value=0.02 Score=64.79 Aligned_cols=203 Identities=13% Similarity=0.083 Sum_probs=108.6
Q ss_pred CCeEEEEEcCCC-eEEEEE------CCC--cEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCc-EEEE--
Q 004924 479 PIATYFILLPQD-LFAFGF------DDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ-LCVW-- 546 (723)
Q Consensus 479 ~~v~~l~~~p~~-~l~sgs------~dg--~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~-I~vw-- 546 (723)
..+.+.+++|+| .++... .|. .|.+++.. +.......+. ....-.|+|||..+.+.+.... +++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 457788999999 655443 233 56666652 3332223332 3778899999988777754322 2222
Q ss_pred ---------eCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEE---EECCCCcee----EEecCC
Q 004924 547 ---------DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDV---YEAPTLNHT----SQLVPD 610 (723)
Q Consensus 547 ---------d~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~v---wd~~~~~~~----~~~~~~ 610 (723)
+++.++. . .... ..|..+.|||||..++...++.|++ -....|... ..+..
T Consensus 427 ~~~gql~~~~vd~ge~------~---~~~~---g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~- 493 (591)
T PRK13616 427 PATGQLARTPVDASAV------A---SRVP---GPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGP- 493 (591)
T ss_pred CCCceEEEEeccCchh------h---hccC---CCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeec-
Confidence 3332211 0 0111 5799999999999999855678777 444445411 11111
Q ss_pred CCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCC-CcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCc
Q 004924 611 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR 689 (723)
Q Consensus 611 ~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~ 689 (723)
.-...+.++.|..++.++ ++..++.-.+|.+.- |.....+. . +..... +.+++-++ . .+.....+|.
T Consensus 494 ~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~-~-----~n~~~~--v~~vaa~~-~--~iyv~~~~g~ 561 (591)
T PRK13616 494 GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALP-S-----RNLSAP--VVAVAASP-S--TVYVTDARAV 561 (591)
T ss_pred ccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccC-C-----CCccCc--eEEEecCC-c--eEEEEcCCce
Confidence 113346889999999855 555555444554432 22211111 1 100112 33676666 2 3445556663
Q ss_pred EEEEecCCCceeeecCCCCc
Q 004924 690 VHVIEPLESEVEWGKLPFTD 709 (723)
Q Consensus 690 v~iWd~~~~~~~w~~~~~~~ 709 (723)
+.+=.-.++..-|...+...
T Consensus 562 ~~l~~~~~~~~~W~ev~~l~ 581 (591)
T PRK13616 562 LQLPNSDSGDQYWREVPGLM 581 (591)
T ss_pred EEecCCCCCCCCceECcccc
Confidence 33332233456788765443
No 360
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.40 E-value=0.04 Score=57.98 Aligned_cols=173 Identities=18% Similarity=0.168 Sum_probs=101.7
Q ss_pred CcEEEEEcCCCcEEEEEe-CCCCCeEEEE---EcC----CC-eEEEEEC----------CCcEEEEeCCCC----cEEEE
Q 004924 458 GKISIFSLETFQTLATFA-NPPPIATYFI---LLP----QD-LFAFGFD----------DSSILVHCPCTK----KTKAK 514 (723)
Q Consensus 458 g~I~vwd~~~~~~~~~~~-~~~~~v~~l~---~~p----~~-~l~sgs~----------dg~I~iwd~~~~----~~~~~ 514 (723)
+.|++.|..+.+.+..+. .....+++++ +.. .. ++++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 357888888887777665 2233444443 332 24 7777653 288999999884 22222
Q ss_pred E--cCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-eeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cC
Q 004924 515 L--KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK-KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE 590 (723)
Q Consensus 515 l--~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~-~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~d 590 (723)
+ ....++|++++-- +|. ++++. .+.|.+|++...+ ...... .... ..+.++... +.++++| ..
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~----~~~~----~~i~sl~~~--~~~I~vgD~~ 148 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAF----YDSP----FYITSLSVF--KNYILVGDAM 148 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEE----E-BS----SSEEEEEEE--TTEEEEEESS
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhhe----ecce----EEEEEEecc--ccEEEEEEcc
Confidence 2 2256889888766 444 44443 5899999998854 211111 1111 356666655 4577775 55
Q ss_pred CcEEEEECCC-CceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECC
Q 004924 591 GQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 591 g~I~vwd~~~-~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~ 643 (723)
..+.++..+. ...+..+........++++.|-++++.++++..+|.+.++...
T Consensus 149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 6666654332 2323333222235668899998777899999999999999876
No 361
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.40 E-value=0.14 Score=52.44 Aligned_cols=223 Identities=13% Similarity=0.105 Sum_probs=122.8
Q ss_pred CCEEEEEe-CCcEEEEEcCC-CcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEE----------
Q 004924 449 GSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL---------- 515 (723)
Q Consensus 449 ~~~l~s~s-dg~I~vwd~~~-~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l---------- 515 (723)
++.|+.|. +| +.+++... ....+... ...|..+...|+- .+++-+ |+.++++++..-.....-
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 77888889 56 99999833 33333332 2238889888876 444443 599999998764333210
Q ss_pred ----cCcCCcEEEEE--EcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEc
Q 004924 516 ----KGHQNRITCLA--YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH 589 (723)
Q Consensus 516 ----~~~~~~i~~l~--~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~ 589 (723)
......+..++ -...+...++....++|.+|............+..+.-. ..+.+++|. +..++.+.
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-----~~~~~i~~~--~~~i~v~~ 155 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-----DPPSSIAFL--GNKICVGT 155 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-----CCcEEEEEe--CCEEEEEe
Confidence 01222344444 123344444445566888888765311000122222222 578899999 56788777
Q ss_pred CCcEEEEECCCCceeEEecCCCC----------CCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEE--Eeeccccc
Q 004924 590 EGQIDVYEAPTLNHTSQLVPDKM----------DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC--QINLTAYA 657 (723)
Q Consensus 590 dg~I~vwd~~~~~~~~~~~~~~h----------~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~--~~~~~~~~ 657 (723)
.+...+.|+.++.....+..... ..++..+.. +++.+|++- |. +-+|=-..|+... .+..
T Consensus 156 ~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~-~g~fv~~~G~~~r~~~i~W---- 227 (275)
T PF00780_consen 156 SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DN-IGVFVNKNGEPSRKSTIQW---- 227 (275)
T ss_pred CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cc-eEEEEcCCCCcCcccEEEc----
Confidence 77899999987766443322111 122333333 445666653 22 3333333444332 2221
Q ss_pred CCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCcee
Q 004924 658 QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 701 (723)
Q Consensus 658 ~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~ 701 (723)
. ..+.++++.. .+|+..+. +.|.||++.+++..
T Consensus 228 -----~--~~p~~~~~~~---pyli~~~~-~~iEV~~~~~~~lv 260 (275)
T PF00780_consen 228 -----S--SAPQSVAYSS---PYLIAFSS-NSIEVRSLETGELV 260 (275)
T ss_pred -----C--CchhEEEEEC---CEEEEECC-CEEEEEECcCCcEE
Confidence 1 1233666654 47776665 45999999999753
No 362
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.40 E-value=0.2 Score=51.19 Aligned_cols=238 Identities=13% Similarity=0.105 Sum_probs=135.2
Q ss_pred CCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccce
Q 004924 336 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 415 (723)
Q Consensus 336 dg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~ 415 (723)
.++.++.|..+| +.+++... ........ +...|..+...|+-+.|++-+ |+.+.++++............
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~---~~~~~~i~-----~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~ 75 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSD---PSKPTRIL-----KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPL 75 (275)
T ss_pred CCCEEEEEECCC-EEEEEecC---CccceeEe-----ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccc
Confidence 578899998888 88888832 33333332 445599999999888766665 599999998753331100000
Q ss_pred eeeeEEEecCCCeeeeeccCCCCCCCeEEEE---Ee--CCEEEEEeCCcEEEEEcCCC-----cEEEEEeCCCCCeEEEE
Q 004924 416 NMESQLYQPSSKLVMTNDIAADPKDSISCFA---LR--GSHLFSASGGKISIFSLETF-----QTLATFANPPPIATYFI 485 (723)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~---~s--~~~l~s~sdg~I~vwd~~~~-----~~~~~~~~~~~~v~~l~ 485 (723)
. . ..+....... .....+...+ -. +..|+++...+|.+|..... +..+.+.- ...+.+++
T Consensus 76 ~------~-~~~~~~~~~~--~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~ 145 (275)
T PF00780_consen 76 A------F-PKSRSLPTKL--PETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIA 145 (275)
T ss_pred c------c-cccccccccc--cccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEE
Confidence 0 0 0000000000 1334455555 11 44566666789998887553 34555543 36678899
Q ss_pred EcCCCeEEEEECCCcEEEEeCCCCcEEEEEcCcC------------CcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 004924 486 LLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ------------NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 553 (723)
Q Consensus 486 ~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~~------------~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~ 553 (723)
|.++ .++.|.. +...+.|+.++.....+.... .++..+.. +++.+|++- |..-.+.|..+ +.
T Consensus 146 ~~~~-~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G-~~ 219 (275)
T PF00780_consen 146 FLGN-KICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNG-EP 219 (275)
T ss_pred EeCC-EEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCC-Cc
Confidence 9844 6666664 458888998776654442111 22333333 344555543 33333445443 32
Q ss_pred eeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecC
Q 004924 554 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP 609 (723)
Q Consensus 554 ~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~ 609 (723)
.....+. + . ..+.++++. ..++++-.++.|.||++.+++.++++..
T Consensus 220 ~r~~~i~-W--~-----~~p~~~~~~--~pyli~~~~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 220 SRKSTIQ-W--S-----SAPQSVAYS--SPYLIAFSSNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred CcccEEE-c--C-----CchhEEEEE--CCEEEEECCCEEEEEECcCCcEEEEEEC
Confidence 2222222 2 1 345566664 3588876667799999999999988864
No 363
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.38 E-value=0.032 Score=54.76 Aligned_cols=216 Identities=13% Similarity=0.055 Sum_probs=126.6
Q ss_pred EEEEEcCCCcEEEEEeCCCCC--eEEEEEcCCC-eEEEEECC-----CcEEEEeCCCC-cEEEEEcCcCCcEEEEEEcCC
Q 004924 460 ISIFSLETFQTLATFANPPPI--ATYFILLPQD-LFAFGFDD-----SSILVHCPCTK-KTKAKLKGHQNRITCLAYSLS 530 (723)
Q Consensus 460 I~vwd~~~~~~~~~~~~~~~~--v~~l~~~p~~-~l~sgs~d-----g~I~iwd~~~~-~~~~~l~~~~~~i~~l~~spd 530 (723)
..++|..+.+...++....+. .-.=.||||| +|+..-.| |.|-|||.+.+ +.+..+..|.-.-..+.|.+|
T Consensus 93 ~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~D 172 (366)
T COG3490 93 AMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMAD 172 (366)
T ss_pred EEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecC
Confidence 456777766655554322211 1123699999 66655433 68999998754 456677888888889999999
Q ss_pred CCEEEEEeC------------------CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCC
Q 004924 531 LNVLVSSGA------------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG 591 (723)
Q Consensus 531 g~~l~s~s~------------------dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg 591 (723)
|+.++.+.. .-++.+.|..+|+.+.+..+. -...+ -.|..++..+||+.++.+ ..|
T Consensus 173 GrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp-~~l~~----lSiRHld~g~dgtvwfgcQy~G 247 (366)
T COG3490 173 GRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP-ASLRQ----LSIRHLDIGRDGTVWFGCQYRG 247 (366)
T ss_pred CcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCc-hhhhh----cceeeeeeCCCCcEEEEEEeeC
Confidence 999887642 123445555555444333222 00112 578889999999888765 222
Q ss_pred c-----EEEEECCCCceeEEecCCC-----CCCCeEEEEEeeCCcEEEEEe-CCCcEEEEECCCCcEEEEeecccccCCC
Q 004924 592 Q-----IDVYEAPTLNHTSQLVPDK-----MDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPG 660 (723)
Q Consensus 592 ~-----I~vwd~~~~~~~~~~~~~~-----h~~~v~~l~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~g 660 (723)
. --+=-...++.+.-+.... -...|-+++.+-+..+++..+ ..+...+||..+|..+.......
T Consensus 248 ~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d----- 322 (366)
T COG3490 248 PRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD----- 322 (366)
T ss_pred CCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc-----
Confidence 1 1111122344433332211 145677888876666665554 44667899999999776543211
Q ss_pred CccCccceEEEEEecCCCCEEEEEECCCcEEEEec
Q 004924 661 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 695 (723)
Q Consensus 661 ~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~ 695 (723)
+..++- ...-++..|.+|.+..+.-
T Consensus 323 -------aaGva~---~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 323 -------AAGVAA---AKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred -------ccccee---ccCceEEecCCceEEeccc
Confidence 112322 2334566667888887744
No 364
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.39 Score=51.72 Aligned_cols=199 Identities=16% Similarity=0.113 Sum_probs=135.3
Q ss_pred CeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCcee
Q 004924 480 IATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKL 554 (723)
Q Consensus 480 ~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~---dg~I~vwd~~~~~~~ 554 (723)
.-..++.++.+ ..++...++.|.+.|..+.+.......- .....++++|+++.+.++.. ++++.+.|..++..
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~- 152 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV- 152 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE-
Confidence 34567888888 4445555689999998777666655422 25678899999988777766 67888888887533
Q ss_pred eceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE--cCCcEEEEECCCCceeEEecC---CCCCCCeEEEEEeeCCcEEE
Q 004924 555 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVP---DKMDLPITYATYSCDGKCIY 629 (723)
Q Consensus 555 ~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s--~dg~I~vwd~~~~~~~~~~~~---~~h~~~v~~l~~spdg~~l~ 629 (723)
+.+.+.+. .+ ..++++|+|..+++. .++.|.+.|........ -.. -........+.++|+|.+++
T Consensus 153 ----~~~~~vG~----~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~y 222 (381)
T COG3391 153 ----TATIPVGN----TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVY 222 (381)
T ss_pred ----EEEEecCC----Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEE
Confidence 33334443 23 789999999988874 68899999987665542 110 01134456789999999777
Q ss_pred EEeCC---CcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEE-CCCcEEEEecCCCce
Q 004924 630 VSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVHVIEPLESEV 700 (723)
Q Consensus 630 sgs~d---g~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s-~Dg~v~iWd~~~~~~ 700 (723)
+.... +.+...|..++.....-... ... ....+..+| ++..+.+.. ..+.|.+-|..+...
T Consensus 223 V~~~~~~~~~v~~id~~~~~v~~~~~~~--------~~~-~~~~v~~~p-~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 223 VANDGSGSNNVLKIDTATGNVTATDLPV--------GSG-APRGVAVDP-AGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred EEeccCCCceEEEEeCCCceEEEecccc--------ccC-CCCceeECC-CCCEEEEEecCCCeEEEEeCCCCce
Confidence 65554 58999999998766652211 111 234688899 788777664 447888888877553
No 365
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.27 E-value=0.098 Score=51.93 Aligned_cols=188 Identities=13% Similarity=-0.005 Sum_probs=111.9
Q ss_pred eEEEEEcCCC-eEEEEECCC--cEEEEeCCCCcEEEEEcCcC-CcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeec
Q 004924 481 ATYFILLPQD-LFAFGFDDS--SILVHCPCTKKTKAKLKGHQ-NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 556 (723)
Q Consensus 481 v~~l~~~p~~-~l~sgs~dg--~I~iwd~~~~~~~~~l~~~~-~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~ 556 (723)
...+.|..+| .+-+.+.-| .|+.+|+.+|+......-.. .--..++... ++.....-.++...+||.++.+....
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEEEE
Confidence 4567777778 666666655 79999999998776543211 1112233332 23344445688899999998544332
Q ss_pred eeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecCCCCCC---CeEEEEEeeCCcEEEEEe
Q 004924 557 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDL---PITYATYSCDGKCIYVSC 632 (723)
Q Consensus 557 ~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~~---~v~~l~~spdg~~l~sgs 632 (723)
.... +.-..++ .|++.|+.+ ....|+.+|..+.+....+....... .++.+.|- +|...|=.-
T Consensus 126 ~~y~----------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW 192 (264)
T PF05096_consen 126 FPYP----------GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW 192 (264)
T ss_dssp EE-S----------SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET
T ss_pred EecC----------CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC
Confidence 2221 3444555 566666664 66799999998888777765433333 35556664 676666566
Q ss_pred CCCcEEEEECCCCcEEEEeecccccCC----CCc---cCccceEEEEEecCCCCEEEEE
Q 004924 633 KSGHVKVFDTSTLELRCQINLTAYAQP----GTI---SLELYPLVIAAHPLEPNRIALG 684 (723)
Q Consensus 633 ~dg~I~iwd~~~~~~~~~~~~~~~~~~----g~~---~~~v~~~~v~~sp~d~~~las~ 684 (723)
....|...|..+|+....+......+. ... .+-. ..+||.|..+.+++||
T Consensus 193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVL--NGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVL--NGIAYDPETDRLFVTG 249 (264)
T ss_dssp TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-E--EEEEEETTTTEEEEEE
T ss_pred CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCee--EeEeEeCCCCEEEEEe
Confidence 678899999999999988875543321 000 1223 4999999555556665
No 366
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.26 E-value=0.13 Score=53.08 Aligned_cols=204 Identities=18% Similarity=0.091 Sum_probs=114.7
Q ss_pred CCcEEEEEcCCCcEEEEEeCCCCCeEEEEE-cCCCeEEEEECCCcEEEEeCCCCcEEEEEc----C-cCCcEEEEEEcCC
Q 004924 457 GGKISIFSLETFQTLATFANPPPIATYFIL-LPQDLFAFGFDDSSILVHCPCTKKTKAKLK----G-HQNRITCLAYSLS 530 (723)
Q Consensus 457 dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~-~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~----~-~~~~i~~l~~spd 530 (723)
.+.|.-|+..+++. ..+..+.. +.++.. ...+.|+++.. .+.+++.+++..+..+. + .....+.....|+
T Consensus 46 ~~~i~r~~~~~g~~-~~~~~p~~-~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pd 121 (307)
T COG3386 46 GGRIHRLDPETGKK-RVFPSPGG-FSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPD 121 (307)
T ss_pred CCeEEEecCCcCce-EEEECCCC-cccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCC
Confidence 67788888776543 22322222 233333 33335555533 35666766665533332 1 2256678889999
Q ss_pred CCEEEEEeC-----------CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE--cCCcEEEEE
Q 004924 531 LNVLVSSGA-----------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYE 597 (723)
Q Consensus 531 g~~l~s~s~-----------dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s--~dg~I~vwd 597 (723)
|.+.++... -|.++.+|. .+. ... +...+. ..-+.++||||++.++.+ ..+.|+-|+
T Consensus 122 G~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~-----~~~-l~~~~~---~~~NGla~SpDg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 122 GRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGG-----VVR-LLDDDL---TIPNGLAFSPDGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CCEEEeCCCccccCccccCCcceEEEEcC-CCC-----EEE-eecCcE---EecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence 977654333 122333333 221 111 222222 345689999999888874 557888887
Q ss_pred CCC--Cce---eEEecCCCCCCCeEEEEEeeCCcEEEEEeCCC-cEEEEECCCCcEEEEeecccccCCCCccCccceEEE
Q 004924 598 APT--LNH---TSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 671 (723)
Q Consensus 598 ~~~--~~~---~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg-~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v 671 (723)
+.. +.. ...+......+..-.++...+|.+.+++..+| .|.+|+.. |+++..+..+. .+++++
T Consensus 192 ~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~----------~~~t~~ 260 (307)
T COG3386 192 LDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV----------KRPTNP 260 (307)
T ss_pred cCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC----------CCCccc
Confidence 752 111 11111111245566778888888776555554 89999999 88888886531 224477
Q ss_pred EEecCCCCEEEEEE
Q 004924 672 AAHPLEPNRIALGL 685 (723)
Q Consensus 672 ~~sp~d~~~las~s 685 (723)
+|--.+.+.|...+
T Consensus 261 ~FgG~~~~~L~iTs 274 (307)
T COG3386 261 AFGGPDLNTLYITS 274 (307)
T ss_pred eEeCCCcCEEEEEe
Confidence 77543455554443
No 367
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.21 E-value=0.075 Score=57.01 Aligned_cols=207 Identities=15% Similarity=0.135 Sum_probs=111.9
Q ss_pred CeEEEEEcCCC-eEEEEECCCcEEEEeCCCCc-------------------------------------------EEEEE
Q 004924 480 IATYFILLPQD-LFAFGFDDSSILVHCPCTKK-------------------------------------------TKAKL 515 (723)
Q Consensus 480 ~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~-------------------------------------------~~~~l 515 (723)
.|+.+.|+++. -+++|...|.|.+|.....+ +...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47788888887 88888888888877532110 11122
Q ss_pred cCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeee--eecCCCCCCCCeEEEEEcc-----CC---CEE
Q 004924 516 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS--FQTGLVPETTIVNHIQFHP-----DQ---IHL 585 (723)
Q Consensus 516 ~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~--~~~~~~~~~~~v~~l~~sp-----dg---~~l 585 (723)
....++|++++.+.- -+++.|..+|.+.|.|+++...+....+.. ...... ..++++.|+- |+ -.+
T Consensus 83 ~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~---~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 83 DAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSS---SYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp ---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS-------EEEEEEEEEE-TTSSSEEEEE
T ss_pred eccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccc---cCeeEEEEEEEecCCCcccceEE
Confidence 334678999998744 489999999999999999865554444432 111111 5688888862 33 234
Q ss_pred EEE-cCCcEEEEECC--C-CceeEEecC--CCCCCCeEEEE-EeeCC--------------------cEEEEEeCCCcEE
Q 004924 586 LSI-HEGQIDVYEAP--T-LNHTSQLVP--DKMDLPITYAT-YSCDG--------------------KCIYVSCKSGHVK 638 (723)
Q Consensus 586 ~~s-~dg~I~vwd~~--~-~~~~~~~~~--~~h~~~v~~l~-~spdg--------------------~~l~sgs~dg~I~ 638 (723)
++| ..|.+.+|.+- . +.-...+.. ..+.++|..+. ++.+. +-++....+..++
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir 238 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR 238 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence 454 77999999764 1 211111111 12356666555 43210 2234444578899
Q ss_pred EEECCCCcEEEEeecccccCCCCccCccceEEEEE-----ecCCCCEEEEEECCCcEEEEecCCCcee
Q 004924 639 VFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA-----HPLEPNRIALGLTNGRVHVIEPLESEVE 701 (723)
Q Consensus 639 iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~-----sp~d~~~las~s~Dg~v~iWd~~~~~~~ 701 (723)
++...+.+..+.... ...-+..+.+ .. .+..|++-..||.|+++.+..=+..
T Consensus 239 v~~~~~~k~~~K~~~----------~~~~~~~~~vv~~~~~~-~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 239 VFKPPKSKGAHKSFD----------DPFLCSSASVVPTISRN-GGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp EE-TT---EEEEE-S----------S-EEEEEEEEEEEE-EE-EEEEEEEEETTSEEEEEETTT--EE
T ss_pred EEeCCCCcccceeec----------cccccceEEEEeecccC-CceEEEEEECCCcEEEEECCCchHh
Confidence 999998876655431 1122223333 22 4567899999999999999876544
No 368
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=97.19 E-value=0.00043 Score=52.10 Aligned_cols=52 Identities=31% Similarity=0.502 Sum_probs=40.0
Q ss_pred cchhhHHhhhcCChHHHHHHHhhccccccCcchhHHHHHHHHHHHHHHHhhcC
Q 004924 160 DINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQ 212 (723)
Q Consensus 160 ~~~~l~~~i~~G~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~q~~le~l~~~e 212 (723)
++..++++|++|+|+.|++.+..........-+...|. |++|+|+|+++.++
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~-L~~q~~lell~~~~ 55 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFE-LRKQKFLELVRQGK 55 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhH-HHHHHHHHHHHcCC
Confidence 35778999999999999999987744332333445566 99999999998764
No 369
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.18 E-value=0.28 Score=53.60 Aligned_cols=241 Identities=12% Similarity=0.072 Sum_probs=121.6
Q ss_pred ceEEEEEeCCCCEEEEEE-CCC----cEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--
Q 004924 376 RVVRLIYSHSGDFLVALT-QTA----THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 448 (723)
Q Consensus 376 ~V~~l~fspdg~~las~s-~dg----~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-- 448 (723)
.+...++||||+++|.+- ..| ++++.|+. +|..+...+ .......+.|.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~---------------------tg~~l~d~i---~~~~~~~~~W~~d 180 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLE---------------------TGKFLPDGI---ENPKFSSVSWSDD 180 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETT---------------------TTEEEEEEE---EEEESEEEEECTT
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECC---------------------CCcCcCCcc---cccccceEEEeCC
Confidence 334678999999988663 333 36666655 333332111 01111237888
Q ss_pred CCEEEEEe-CC-----------cEEEEEcCCCcE--EEEEeCCCCC--eEEEEEcCCC-eEE-EEECC---CcEEEEeCC
Q 004924 449 GSHLFSAS-GG-----------KISIFSLETFQT--LATFANPPPI--ATYFILLPQD-LFA-FGFDD---SSILVHCPC 507 (723)
Q Consensus 449 ~~~l~s~s-dg-----------~I~vwd~~~~~~--~~~~~~~~~~--v~~l~~~p~~-~l~-sgs~d---g~I~iwd~~ 507 (723)
++.++... +. .|..|.+.+... ...+...... ...+..++|+ +++ ..... ..+++.++.
T Consensus 181 ~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~ 260 (414)
T PF02897_consen 181 GKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD 260 (414)
T ss_dssp SSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred CCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence 45555444 32 277888877643 3445443332 5678889999 544 33333 347888887
Q ss_pred CC----cEEEEEcCcCCcE-EEEEEcCCCCEEEEEeC---CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEc
Q 004924 508 TK----KTKAKLKGHQNRI-TCLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 579 (723)
Q Consensus 508 ~~----~~~~~l~~~~~~i-~~l~~spdg~~l~s~s~---dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~s 579 (723)
.+ .....+......+ ..+... .+.+++.... .+.|.-.++..........+ +...... ..+..+..
T Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~--l~~~~~~--~~l~~~~~- 334 (414)
T PF02897_consen 261 DGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTV--LIPEDED--VSLEDVSL- 334 (414)
T ss_dssp CTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEE--EE--SSS--EEEEEEEE-
T ss_pred ccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeE--EcCCCCc--eeEEEEEE-
Confidence 64 2233333333333 334333 3434433322 35666677776432111111 1221100 13444444
Q ss_pred cCCCEEEE-E-cCC--cEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEE--EeC--CCcEEEEECCCCcEE
Q 004924 580 PDQIHLLS-I-HEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV--SCK--SGHVKVFDTSTLELR 648 (723)
Q Consensus 580 pdg~~l~~-s-~dg--~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s--gs~--dg~I~iwd~~~~~~~ 648 (723)
.+.+|+. . .++ .|+++++..+.....+.... .+.|..+...+++..+.. .|. -++++-||+.+++..
T Consensus 335 -~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 335 -FKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp -ETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred -ECCEEEEEEEECCccEEEEEECCCCcEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 4556665 2 443 79999997355555554432 445666665566654442 222 378999999998754
No 370
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.17 E-value=0.047 Score=57.40 Aligned_cols=180 Identities=15% Similarity=0.092 Sum_probs=107.9
Q ss_pred CcEEEEeCCCCcEEEEEcCc-CCcEEE---EEEcCC----CCEEEEEeC----------CCcEEEEeCCCC-ce-eecee
Q 004924 499 SSILVHCPCTKKTKAKLKGH-QNRITC---LAYSLS----LNVLVSSGA----------DAQLCVWDAVGW-KK-LCSKF 558 (723)
Q Consensus 499 g~I~iwd~~~~~~~~~l~~~-~~~i~~---l~~spd----g~~l~s~s~----------dg~I~vwd~~~~-~~-~~~~~ 558 (723)
+.|++.|..+.+.+..+.-. ...+.+ +.+..+ ..++++|+. .|.|.++++... .. ..-..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35788888887777655321 223333 334332 456777654 288999999883 10 01111
Q ss_pred eeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCc-eeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcE
Q 004924 559 LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 637 (723)
Q Consensus 559 l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~-~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I 637 (723)
+.... .. ++|.+++-- +..++++.++.|++|++...+ ....-... ....+.++.. .++++++|..-..+
T Consensus 82 i~~~~--~~---g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~-~~~~i~sl~~--~~~~I~vgD~~~sv 151 (321)
T PF03178_consen 82 IHSTE--VK---GPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKAFYD-SPFYITSLSV--FKNYILVGDAMKSV 151 (321)
T ss_dssp EEEEE--ES---S-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEEEE--BSSSEEEEEE--ETTEEEEEESSSSE
T ss_pred EEEEe--ec---CcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhheec-ceEEEEEEec--cccEEEEEEcccCE
Confidence 11111 11 688888776 345778888999999998777 44333221 1335555554 46699999988888
Q ss_pred EEEECCC-CcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCC
Q 004924 638 KVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 638 ~iwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~ 697 (723)
.++.... +..+..+.. ...+.+++++.+-+ +++.++.+..+|.+.++....
T Consensus 152 ~~~~~~~~~~~l~~va~--------d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 152 SLLRYDEENNKLILVAR--------DYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEEETTTE-EEEEEE--------ESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEEEccCCEEEEEEe--------cCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECC
Confidence 8875543 222233321 13345677999987 457999999999999998863
No 371
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.16 E-value=0.01 Score=67.97 Aligned_cols=132 Identities=15% Similarity=0.177 Sum_probs=94.7
Q ss_pred CCcEEEEEcCCCcEEEEEeCCCCC-eEEEEEcC-----CC-eEEEEECCCcEEEEeCCCCc--EEEE-Ec--CcCCcEEE
Q 004924 457 GGKISIFSLETFQTLATFANPPPI-ATYFILLP-----QD-LFAFGFDDSSILVHCPCTKK--TKAK-LK--GHQNRITC 524 (723)
Q Consensus 457 dg~I~vwd~~~~~~~~~~~~~~~~-v~~l~~~p-----~~-~l~sgs~dg~I~iwd~~~~~--~~~~-l~--~~~~~i~~ 524 (723)
...+.-.|+++|+.+..+..+... |..++-.. ++ ..+.|-.+..+..||.+-.. ++.. .. ......+|
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~ 582 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSC 582 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceE
Confidence 478999999999999999876654 55443221 13 56778889999999988532 2211 11 13456778
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEEC
Q 004924 525 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 598 (723)
Q Consensus 525 l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~ 598 (723)
++-+.+| +||+|+.+|.||+||--+ . .-.+...+-. .+|..+..+.||+|+++..+..+.+++.
T Consensus 583 ~aTt~~G-~iavgs~~G~IRLyd~~g-~-----~AKT~lp~lG---~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 583 FATTEDG-YIAVGSNKGDIRLYDRLG-K-----RAKTALPGLG---DPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred EEecCCc-eEEEEeCCCcEEeecccc-h-----hhhhcCCCCC---CCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 8888777 789999999999999533 1 1222222323 7999999999999999988888888885
No 372
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.06 E-value=0.95 Score=52.18 Aligned_cols=317 Identities=11% Similarity=0.039 Sum_probs=165.0
Q ss_pred CEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceee
Q 004924 338 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM 417 (723)
Q Consensus 338 ~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~ 417 (723)
+.++.|.++..+.+--.-.+ ........+++..-...|.-..|-.|+.||.++..||.+.-+.++
T Consensus 549 ~~~aVG~Ws~~~~~l~~~pd--~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d------------- 613 (1096)
T KOG1897|consen 549 RLLAVGLWSDISMILTFLPD--LILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLD------------- 613 (1096)
T ss_pred eEEEEEeecceEEEEEECCC--cceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEE-------------
Confidence 46888888877655443321 111111112221123456666777788899999999998776644
Q ss_pred eeEEEecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEeCCcEEEEEcCCCcEE-EEEeCCCCCeEEEEEcCCC---
Q 004924 418 ESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGKISIFSLETFQTL-ATFANPPPIATYFILLPQD--- 490 (723)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~sdg~I~vwd~~~~~~~-~~~~~~~~~v~~l~~~p~~--- 490 (723)
..+|..-......-...++.--.|+ ...+++++|.-..+|.-. ++.. ..+... ..-..+.|+.+.
T Consensus 614 ------~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~k-ev~~~c~f~s~a~~d 685 (1096)
T KOG1897|consen 614 ------INTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSLK-EVNHMCPFNSDAYPD 685 (1096)
T ss_pred ------cccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccchH-HhhhhcccccccCCc
Confidence 2333222111100134555555666 566777777766666643 3322 222110 001122343333
Q ss_pred eEEEEECCCcEEEEeCCCCc--EEEEEcCcCCcEEEEEEcCCCCEEEEEeCC--------------CcEEEEeCCCCcee
Q 004924 491 LFAFGFDDSSILVHCPCTKK--TKAKLKGHQNRITCLAYSLSLNVLVSSGAD--------------AQLCVWDAVGWKKL 554 (723)
Q Consensus 491 ~l~sgs~dg~I~iwd~~~~~--~~~~l~~~~~~i~~l~~spdg~~l~s~s~d--------------g~I~vwd~~~~~~~ 554 (723)
.++++. .+.+++..++.-+ .++++. -......+++.+....+.+.+.. ..++++|-++.+..
T Consensus 686 ~l~~~~-~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl 763 (1096)
T KOG1897|consen 686 SLASAN-GGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL 763 (1096)
T ss_pred eEEEec-CCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence 444443 4556666554322 223332 22345556666643333333221 23777887775444
Q ss_pred eceeeeeeecCCCCCCCCeEEEEEccC-CCEEEEEc-----------CCcEEEEECCCCceeEEecCCCCCCCeEEEEEe
Q 004924 555 CSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIH-----------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 622 (723)
Q Consensus 555 ~~~~l~~~~~~~~~~~~~v~~l~~spd-g~~l~~s~-----------dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~s 622 (723)
+...+...... ..+.+..|..| +.++++|. .|.|.||.+..++.+.......-.+.+.++..
T Consensus 764 ~~hef~~~E~~-----~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~- 837 (1096)
T KOG1897|consen 764 SSHEFERNETA-----LSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE- 837 (1096)
T ss_pred eecccccccee-----eeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-
Confidence 33333211111 34566668877 67776631 36788888877443333322112445555443
Q ss_pred eCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCC
Q 004924 623 CDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 623 pdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
-+|++||+- +..|++|++.+.+.+..-.. +..++. .+...- .++.++.|..-+++.+-.....
T Consensus 838 fngkllA~I--n~~vrLye~t~~~eLr~e~~--------~~~~~~--aL~l~v-~gdeI~VgDlm~Sitll~y~~~ 900 (1096)
T KOG1897|consen 838 FNGKLLAGI--NQSVRLYEWTTERELRIECN--------ISNPII--ALDLQV-KGDEIAVGDLMRSITLLQYKGD 900 (1096)
T ss_pred hCCeEEEec--CcEEEEEEccccceehhhhc--------ccCCeE--EEEEEe-cCcEEEEeeccceEEEEEEecc
Confidence 367766654 47899999998865543321 122334 444444 6788999887777776554433
No 373
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.02 E-value=0.025 Score=47.98 Aligned_cols=97 Identities=14% Similarity=0.219 Sum_probs=63.4
Q ss_pred eEEEEEeC---CC-CEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCE
Q 004924 377 VVRLIYSH---SG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 451 (723)
Q Consensus 377 V~~l~fsp---dg-~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~ 451 (723)
|+++++.. || +.|+.||.|..||+|+-. ....++ .-.+.|+++.-. +..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-------e~~~Ei-------------------~e~~~v~~L~~~~~~~ 55 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-------EIVAEI-------------------TETDKVTSLCSLGGGR 55 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-------cEEEEE-------------------ecccceEEEEEcCCCE
Confidence 55666554 33 579999999999999833 111111 245677888777 777
Q ss_pred EEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEE---cCCC--eEEEEECCCcEE
Q 004924 452 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL---LPQD--LFAFGFDDSSIL 502 (723)
Q Consensus 452 l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~---~p~~--~l~sgs~dg~I~ 502 (723)
++.+- +|+|-+|+-. ..+...+.... ++++.+ ..|| .|++|-.+|.|-
T Consensus 56 F~Y~l~NGTVGvY~~~--~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 56 FAYALANGTVGVYDRS--QRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEecCCEEEEEeCc--ceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 88887 9999999753 33344443333 445544 3455 899999998774
No 374
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.98 E-value=0.04 Score=63.34 Aligned_cols=143 Identities=16% Similarity=0.141 Sum_probs=97.1
Q ss_pred EEEEECCCcEEEEeCCCCcEEEEEcCcCCc-EEEEEEcC-----CCCEEEEEeCCCcEEEEeCCCCc-eeeceeeeeeec
Q 004924 492 FAFGFDDSSILVHCPCTKKTKAKLKGHQNR-ITCLAYSL-----SLNVLVSSGADAQLCVWDAVGWK-KLCSKFLHSFQT 564 (723)
Q Consensus 492 l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~-i~~l~~sp-----dg~~l~s~s~dg~I~vwd~~~~~-~~~~~~l~~~~~ 564 (723)
|........|+-.|+..|+.+..+..|... |..++-.. +....+.|-.+..+..||.+-.. ............
T Consensus 497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~ 576 (794)
T PF08553_consen 497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS 576 (794)
T ss_pred eecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccccc
Confidence 334445678999999999999999887643 55543221 12345677888999999998632 111111111111
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEEC
Q 004924 565 GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 642 (723)
Q Consensus 565 ~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~ 642 (723)
. ....|++-+.+|...+++.+|.||+||- .|..-.+..+ +-+.+|.++..+.||+||++.+ +..|.+++.
T Consensus 577 ~-----~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp-~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 577 K-----NNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALP-GLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred C-----CCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCC-CCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 1 5678899898887777789999999995 4443333333 3478999999999999998887 466777775
No 375
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.89 E-value=0.0029 Score=41.71 Aligned_cols=39 Identities=31% Similarity=0.512 Sum_probs=34.5
Q ss_pred CcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 004924 509 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 547 (723)
Q Consensus 509 ~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd 547 (723)
+++...+..|...|.++.|++++..+++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355677778889999999999999999999999999996
No 376
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.84 E-value=0.052 Score=46.03 Aligned_cols=97 Identities=16% Similarity=0.252 Sum_probs=65.0
Q ss_pred eEEEEEe------CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEE
Q 004924 442 ISCFALR------GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAK 514 (723)
Q Consensus 442 V~~v~~s------~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~ 514 (723)
|+++++. .+.|++|+ |..|++|+-. +.+..+.. ...|++++-...+.|+.+..+|+|-+|+-. +.+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeee
Confidence 5566665 25788888 9999999843 55556544 445777776666699999999999999853 23333
Q ss_pred EcCcCCcEEEEEEc-C--CC-CEEEEEeCCCcEE
Q 004924 515 LKGHQNRITCLAYS-L--SL-NVLVSSGADAQLC 544 (723)
Q Consensus 515 l~~~~~~i~~l~~s-p--dg-~~l~s~s~dg~I~ 544 (723)
.+.. ..+.++.+. . || ..|++|-.+|.|-
T Consensus 77 iKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3332 335555543 3 33 3688998888764
No 377
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.82 E-value=0.16 Score=48.68 Aligned_cols=108 Identities=10% Similarity=0.090 Sum_probs=70.9
Q ss_pred EEEEEEcCCCCEEE-EEeCCCcEEEEe--CCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEE
Q 004924 522 ITCLAYSLSLNVLV-SSGADAQLCVWD--AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 597 (723)
Q Consensus 522 i~~l~~spdg~~l~-s~s~dg~I~vwd--~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd 597 (723)
-+.++|+.+.+.+. +-+.+-.|.-|| ..+|.....+.+..+...........-.+++..+|...+++ ..++|...|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 35688988776655 445567787777 66776555554443333111000223345566678777776 778999999
Q ss_pred CCCCceeEEecCCCCCCCeEEEEEe-eCCcEEEEE
Q 004924 598 APTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVS 631 (723)
Q Consensus 598 ~~~~~~~~~~~~~~h~~~v~~l~~s-pdg~~l~sg 631 (723)
..+|+.+.+++.+ ...|+++||. ++-..+++.
T Consensus 240 p~tGK~L~eiklP--t~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 240 PTTGKILLEIKLP--TPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred CCCCcEEEEEEcC--CCceEEEEecCCCccEEEEE
Confidence 9999999999875 7889999996 444445443
No 378
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.77 E-value=0.093 Score=59.43 Aligned_cols=184 Identities=9% Similarity=-0.010 Sum_probs=98.3
Q ss_pred CCeEEEEEe--CCEEEEEe-------CC--cEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECC---------
Q 004924 440 DSISCFALR--GSHLFSAS-------GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD--------- 498 (723)
Q Consensus 440 ~~V~~v~~s--~~~l~s~s-------dg--~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~d--------- 498 (723)
..+.+.+.+ |+.++... |+ .+.+++. .+.. ..+.. ....+.-.|+|+| .+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 356677777 66554433 33 4445454 2222 33322 2237788999998 66665432
Q ss_pred ---CcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEE---EeCCCCceeeceeeeeeecCCCCCCCC
Q 004924 499 ---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV---WDAVGWKKLCSKFLHSFQTGLVPETTI 572 (723)
Q Consensus 499 ---g~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~v---wd~~~~~~~~~~~l~~~~~~~~~~~~~ 572 (723)
+.+.+.+++.+.... ...+.|..+.|+|||..++... ++.|.+ -....|+.....+ ..+..+-. ..
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~-~~l~~~l~---~~ 498 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNP-REVGPGLG---DT 498 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeeccc-EEeecccC---Cc
Confidence 233333444333322 2346799999999999988766 577776 4444553111111 11222221 34
Q ss_pred eEEEEEccCCCEEEEEcCC--cEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcE
Q 004924 573 VNHIQFHPDQIHLLSIHEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 637 (723)
Q Consensus 573 v~~l~~spdg~~l~~s~dg--~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I 637 (723)
+.++.|.+++..++...++ .++..++. |.....+........+..++-+++ .++.+..+|.+
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vD-G~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLD-GSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecC-CccccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 6889999999866544333 34444553 332222222122455666666653 45555666644
No 379
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0069 Score=65.48 Aligned_cols=93 Identities=14% Similarity=0.068 Sum_probs=74.7
Q ss_pred CCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeec
Q 004924 479 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT-CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 556 (723)
Q Consensus 479 ~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~-~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~ 556 (723)
..+.-+.|+|.- .+|.+..+|.|-++.++ .+.+.++.-+...++ +++|.|||+.+++|-.||+|++-|+.++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 346678999998 99999999999999887 777788876777777 999999999999999999999999999754443
Q ss_pred eeeeeeecCCCCCCCCeEEEEEcc
Q 004924 557 KFLHSFQTGLVPETTIVNHIQFHP 580 (723)
Q Consensus 557 ~~l~~~~~~~~~~~~~v~~l~~sp 580 (723)
.+.. .. ..|.++-|+|
T Consensus 100 ~~~s-----~e---~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFS-----VE---TDISKGIWDR 115 (665)
T ss_pred cccc-----cc---cchheeeccc
Confidence 2211 11 5677888874
No 380
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.74 E-value=0.2 Score=58.42 Aligned_cols=232 Identities=9% Similarity=-0.017 Sum_probs=123.5
Q ss_pred CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCC--------eEEEEEc----------------CCC-eEEEEECCCcEE
Q 004924 449 GSHLFSAS-GGKISIFSLETFQTLATFANPPPI--------ATYFILL----------------PQD-LFAFGFDDSSIL 502 (723)
Q Consensus 449 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~--------v~~l~~~----------------p~~-~l~sgs~dg~I~ 502 (723)
++.++.++ ++.|.-.|..+|+.+..+...... ...+++. ..+ +++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 66777777 899999999999988887532211 1112221 123 788899999999
Q ss_pred EEeCCCCcEEEEEcCcCCcEE-------------EEEEcC--CCCEEEEEeC----------CCcEEEEeCCCCceeece
Q 004924 503 VHCPCTKKTKAKLKGHQNRIT-------------CLAYSL--SLNVLVSSGA----------DAQLCVWDAVGWKKLCSK 557 (723)
Q Consensus 503 iwd~~~~~~~~~l~~~~~~i~-------------~l~~sp--dg~~l~s~s~----------dg~I~vwd~~~~~~~~~~ 557 (723)
-.|.++|+.+..+.. .+.|. .+.-.| .+..+++|+. +|.|+-+|.++|+..-..
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999877642 11110 111122 1345666643 688999999998754432
Q ss_pred eeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCC-cEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCC
Q 004924 558 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG-QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG 635 (723)
Q Consensus 558 ~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg-~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg 635 (723)
... ..... .. -+.+.....+ .+. ...-+|.+.+.... +.+... ..+....+........+
T Consensus 353 ~~g--~p~~~---~~------~~~g~~~~~gg~n~W~~~s~D~~~glvy~---ptGn~~----pd~~g~~r~~~~n~y~~ 414 (764)
T TIGR03074 353 DPG--NPDPT---AP------PAPGETYTRNTPNSWSVASYDEKLGLVYL---PMGNQT----PDQWGGDRTPADEKYSS 414 (764)
T ss_pred ecC--CCCcc---cC------CCCCCEeccCCCCccCceEEcCCCCeEEE---eCCCcc----ccccCCccccCcccccc
Confidence 221 00000 00 0122222211 111 23334444333211 101000 00000000001112246
Q ss_pred cEEEEECCCCcEEEEeecccccCCCCccCccc-----eEEEEEecCCCC---EEEEEECCCcEEEEecCCCceeeecC
Q 004924 636 HVKVFDTSTLELRCQINLTAYAQPGTISLELY-----PLVIAAHPLEPN---RIALGLTNGRVHVIEPLESEVEWGKL 705 (723)
Q Consensus 636 ~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~-----~~~v~~sp~d~~---~las~s~Dg~v~iWd~~~~~~~w~~~ 705 (723)
.|.-.|.++|+....+... ||+..-+ .+-+.....+++ .++.++.+|.+++.|..+|+..|...
T Consensus 415 slvALD~~TGk~~W~~Q~~------~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 415 SLVALDATTGKERWVFQTV------HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred eEEEEeCCCCceEEEeccc------CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 6888899999988877531 1211110 111112111342 78999999999999999999999763
No 381
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.031 Score=59.38 Aligned_cols=132 Identities=16% Similarity=0.247 Sum_probs=93.9
Q ss_pred CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC---e-----EEEEECCCcEEEEeCCCC-c-EEEEEcCc----CCcE
Q 004924 457 GGKISIFSLETFQTLATFANPPPIATYFILLPQD---L-----FAFGFDDSSILVHCPCTK-K-TKAKLKGH----QNRI 522 (723)
Q Consensus 457 dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~---~-----l~sgs~dg~I~iwd~~~~-~-~~~~l~~~----~~~i 522 (723)
...++-.|+++|+.+..+.-+.. |+-+.+.|+. . -+.|-.|..|.-||.+-. . .+..-++| ....
T Consensus 355 ~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nF 433 (644)
T KOG2395|consen 355 QDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNF 433 (644)
T ss_pred cCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccccccc
Confidence 46788889999999998886665 6667777765 2 346778889999998732 2 22222333 2456
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECC
Q 004924 523 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP 599 (723)
Q Consensus 523 ~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~ 599 (723)
.|++-..+| ++++||.+|.|++||--. . ...+...+-. .+|..+..+.+|++|++..+..+.+.++.
T Consensus 434 sc~aTT~sG-~IvvgS~~GdIRLYdri~-~-----~AKTAlPgLG---~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 434 SCFATTESG-YIVVGSLKGDIRLYDRIG-R-----RAKTALPGLG---DAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred ceeeecCCc-eEEEeecCCcEEeehhhh-h-----hhhhcccccC---CceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 677666666 789999999999999733 1 1122223333 78999999999999999888888887753
No 382
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.67 E-value=1.4 Score=48.19 Aligned_cols=240 Identities=14% Similarity=0.093 Sum_probs=123.4
Q ss_pred EEEEe--CCEEEEEe--CC----cEEEEEcCCCcEEEEE-eCCCCCeEEEEEcCCC-eEEEEE-CC----------CcEE
Q 004924 444 CFALR--GSHLFSAS--GG----KISIFSLETFQTLATF-ANPPPIATYFILLPQD-LFAFGF-DD----------SSIL 502 (723)
Q Consensus 444 ~v~~s--~~~l~s~s--dg----~I~vwd~~~~~~~~~~-~~~~~~v~~l~~~p~~-~l~sgs-~d----------g~I~ 502 (723)
...++ |+++|.+- +| +++++|+.+|+.+... ... ....+.|.+++ .|+... .+ ..|+
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 45566 77777553 44 5999999999776532 221 12249999998 444433 22 2378
Q ss_pred EEeCCCCcE--EEEEcCcCCc--EEEEEEcCCCCEEEEEeCC----CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeE
Q 004924 503 VHCPCTKKT--KAKLKGHQNR--ITCLAYSLSLNVLVSSGAD----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN 574 (723)
Q Consensus 503 iwd~~~~~~--~~~l~~~~~~--i~~l~~spdg~~l~s~s~d----g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~ 574 (723)
.|.+.+... ...+...... ...+..++|+++++..+.. ..+.+.|...+. ........+..... +...
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~-~~~~~~~~l~~~~~---~~~~ 281 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG-SPDAKPKLLSPRED---GVEY 281 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT-TSS-SEEEEEESSS---S-EE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC-CCcCCcEEEeCCCC---ceEE
Confidence 888877532 3445443332 6688899999997754432 347777877641 00011121222221 2223
Q ss_pred EEEEccCCCEEEEE----cCCcEEEEECCCCce---eEEecCCCCCCCeEEEEEeeCCcEEEE-EeCC--CcEEEEECCC
Q 004924 575 HIQFHPDQIHLLSI----HEGQIDVYEAPTLNH---TSQLVPDKMDLPITYATYSCDGKCIYV-SCKS--GHVKVFDTST 644 (723)
Q Consensus 575 ~l~~spdg~~l~~s----~dg~I~vwd~~~~~~---~~~~~~~~h~~~v~~l~~spdg~~l~s-gs~d--g~I~iwd~~~ 644 (723)
.+... .+.+++.+ .++.|...++.+... ...+.. +...+.-..+...+.+|+. ...+ ..|+++++..
T Consensus 282 ~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~--~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~ 358 (414)
T PF02897_consen 282 YVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP--EDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDD 358 (414)
T ss_dssp EEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE----SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-
T ss_pred EEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcC--CCCceeEEEEEEECCEEEEEEEECCccEEEEEECCC
Confidence 33333 44444433 446787788876652 223332 2343333334444555554 4444 3588999994
Q ss_pred CcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEE---CCCcEEEEecCCCcee
Q 004924 645 LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL---TNGRVHVIEPLESEVE 701 (723)
Q Consensus 645 ~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s---~Dg~v~iWd~~~~~~~ 701 (723)
+.....+.... .+.+. .+...+....+.++.+ .-+++.-||+.+++..
T Consensus 359 ~~~~~~~~~p~-------~g~v~--~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 359 GKESREIPLPE-------AGSVS--GVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp TEEEEEEESSS-------SSEEE--EEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred CcEEeeecCCc-------ceEEe--ccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 44444443221 22222 4444452223334333 2368888899888753
No 383
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.06 Score=57.30 Aligned_cols=144 Identities=14% Similarity=0.126 Sum_probs=99.3
Q ss_pred eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCE-------EEEEeCCCcEEEEeCCCCceeeceeeeeee
Q 004924 491 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV-------LVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 563 (723)
Q Consensus 491 ~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~-------l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~ 563 (723)
.+.++.....++-.|+..|+.+..+.-+.. |+-+.+.|+++. -+.|-.|..|.-||.+-.... .+. ..
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~-~~ 422 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLA-VV 422 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eee-ee
Confidence 555666677888999999999999987665 777788886542 345667888999998852210 111 11
Q ss_pred cCCC-CCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEEC
Q 004924 564 TGLV-PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 642 (723)
Q Consensus 564 ~~~~-~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~ 642 (723)
.+|. .......|.+-..+|..++.+.+|.|++||- .+..-.+..+ +-+.+|..+..+.||++|++.+ +.++.+.++
T Consensus 423 q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlP-gLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALP-GLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccc-ccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 1111 0014566777777886666689999999998 5554444433 3488999999999999998776 456666654
No 384
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.59 E-value=0.38 Score=54.56 Aligned_cols=101 Identities=15% Similarity=0.103 Sum_probs=53.7
Q ss_pred CCEEEEEe-CC-----cEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCC------cEEEEeCCCCcEEEE-
Q 004924 449 GSHLFSAS-GG-----KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS------SILVHCPCTKKTKAK- 514 (723)
Q Consensus 449 ~~~l~s~s-dg-----~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg------~I~iwd~~~~~~~~~- 514 (723)
|...|+|| || +|-.||..+.+....-.-....-..-...-+| ..++|+.++ ++..||..+++....
T Consensus 381 g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~ 460 (571)
T KOG4441|consen 381 GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA 460 (571)
T ss_pred CEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecC
Confidence 77777787 75 57788887654322211111111111222356 677777554 577888887654321
Q ss_pred -EcCcCCcEEEEEEcCCCCEEEEEeCCCc-----EEEEeCCCC
Q 004924 515 -LKGHQNRITCLAYSLSLNVLVSSGADAQ-----LCVWDAVGW 551 (723)
Q Consensus 515 -l~~~~~~i~~l~~spdg~~l~s~s~dg~-----I~vwd~~~~ 551 (723)
+..-..... ++ .-++...+.|+.|+. +..||..+.
T Consensus 461 ~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 461 PMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred Ccccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCC
Confidence 111111111 22 225677788887763 677888774
No 385
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.52 E-value=0.0079 Score=39.47 Aligned_cols=38 Identities=21% Similarity=0.150 Sum_probs=33.1
Q ss_pred CcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEe
Q 004924 468 FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC 505 (723)
Q Consensus 468 ~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd 505 (723)
++....+..|...+.++.|++++ .+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566777888899999999998 999999999999996
No 386
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.013 Score=63.41 Aligned_cols=90 Identities=20% Similarity=0.214 Sum_probs=73.0
Q ss_pred CCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeE-EEEEcCCC-eEEEEECCCcEEEEeCCCCcEEE
Q 004924 439 KDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIAT-YFILLPQD-LFAFGFDDSSILVHCPCTKKTKA 513 (723)
Q Consensus 439 ~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~-~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~ 513 (723)
...+.-+.|+ -..+|.+. +|.|.+..+. .+.+.++.-|+..++ +++|.||| .+|+|-.||+|++.|+.+|..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3456678888 67888888 8999999887 888888887777777 99999999 99999999999999999988776
Q ss_pred EEc-CcCCcEEEEEEcC
Q 004924 514 KLK-GHQNRITCLAYSL 529 (723)
Q Consensus 514 ~l~-~~~~~i~~l~~sp 529 (723)
.+. .-...|.++.|++
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 632 2345677777763
No 387
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.45 E-value=1.1 Score=47.67 Aligned_cols=183 Identities=17% Similarity=0.186 Sum_probs=87.0
Q ss_pred CCEEEEEe---C----CcEEEEEcCCCcEEEEEeCCC---CCeEEEEEcCCC-eEEEEE--------------------C
Q 004924 449 GSHLFSAS---G----GKISIFSLETFQTLATFANPP---PIATYFILLPQD-LFAFGF--------------------D 497 (723)
Q Consensus 449 ~~~l~s~s---d----g~I~vwd~~~~~~~~~~~~~~---~~v~~l~~~p~~-~l~sgs--------------------~ 497 (723)
|+.++++- + |.+.+.|-++.+......... ..-..+-|.|.. .+++.. .
T Consensus 141 G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~y 220 (461)
T PF05694_consen 141 GRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKY 220 (461)
T ss_dssp --EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S
T ss_pred ccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccc
Confidence 55666652 2 568888888888777776432 233566777766 666543 2
Q ss_pred CCcEEEEeCCCCcEEEEEcCcC--CcEEEEEEc--CCCCE-EEEEeCCCcEEEEeC-CCCceeeceeeeeeecCC-----
Q 004924 498 DSSILVHCPCTKKTKAKLKGHQ--NRITCLAYS--LSLNV-LVSSGADAQLCVWDA-VGWKKLCSKFLHSFQTGL----- 566 (723)
Q Consensus 498 dg~I~iwd~~~~~~~~~l~~~~--~~i~~l~~s--pdg~~-l~s~s~dg~I~vwd~-~~~~~~~~~~l~~~~~~~----- 566 (723)
..++.+||+.+.+.++++.--. .....+.|. |+..+ ++.+.-..+|..|-- ..++-...+.+. ++...
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~-ip~~~v~~~~ 299 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVID-IPAKKVEGWI 299 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEE-E--EE--SS-
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEE-CCCcccCccc
Confidence 4589999999999999886432 234456664 44444 333334455554433 444433333333 22110
Q ss_pred CCC--------CCCeEEEEEccCCCEEEEE--cCCcEEEEECCCC---ceeEEecCCCC--------------CCCeEEE
Q 004924 567 VPE--------TTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTL---NHTSQLVPDKM--------------DLPITYA 619 (723)
Q Consensus 567 ~~~--------~~~v~~l~~spdg~~l~~s--~dg~I~vwd~~~~---~~~~~~~~~~h--------------~~~v~~l 619 (723)
.+. ..-|+.+.+|.|.++|..+ ..|.|+.||+... +.+.++..++. .+...-+
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMv 379 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMV 379 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----E
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeE
Confidence 000 1457899999999999985 8899999999753 23333222110 1223457
Q ss_pred EEeeCCcEEEEEe
Q 004924 620 TYSCDGKCIYVSC 632 (723)
Q Consensus 620 ~~spdg~~l~sgs 632 (723)
..|-||+.|+..+
T Consensus 380 qlS~DGkRlYvTn 392 (461)
T PF05694_consen 380 QLSLDGKRLYVTN 392 (461)
T ss_dssp EE-TTSSEEEEE-
T ss_pred EEccCCeEEEEEe
Confidence 7788888777654
No 388
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.40 E-value=1.2 Score=44.40 Aligned_cols=183 Identities=15% Similarity=0.164 Sum_probs=109.9
Q ss_pred eEEEEE-e-CCEEEEEe-CC--cEEEEEcCCCcEEEEEeCCC-CCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEE
Q 004924 442 ISCFAL-R-GSHLFSAS-GG--KISIFSLETFQTLATFANPP-PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL 515 (723)
Q Consensus 442 V~~v~~-s-~~~l~s~s-dg--~I~vwd~~~~~~~~~~~~~~-~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l 515 (723)
...+.| . |.++-+.+ -| .|+.+|+.+|+......-.. ----.++...+....-.-.++...+||..+-+.+..+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~ 126 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTF 126 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEE
Confidence 456888 4 55556666 44 79999999999877665322 2223444444434444567889999999999888887
Q ss_pred cCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEE
Q 004924 516 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQID 594 (723)
Q Consensus 516 ~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~ 594 (723)
.- .+.=..++ .||..|+.......++++|..+.+......+. ..+.. ...++-+.+- +|...|-- ....|.
T Consensus 127 ~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~--~~g~p--v~~LNELE~i-~G~IyANVW~td~I~ 198 (264)
T PF05096_consen 127 PY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT--DNGRP--VSNLNELEYI-NGKIYANVWQTDRIV 198 (264)
T ss_dssp E--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E--ETTEE-----EEEEEEE-TTEEEEEETTSSEEE
T ss_pred ec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE--ECCEE--CCCcEeEEEE-cCEEEEEeCCCCeEE
Confidence 53 33344554 46777888777888999999886554433222 12211 1456677776 45443334 677888
Q ss_pred EEECCCCceeEEecCC----------C---CCCCeEEEEEeeCCcEEEEEe
Q 004924 595 VYEAPTLNHTSQLVPD----------K---MDLPITYATYSCDGKCIYVSC 632 (723)
Q Consensus 595 vwd~~~~~~~~~~~~~----------~---h~~~v~~l~~spdg~~l~sgs 632 (723)
..|..+|+....+... . ...-.+.+++.|....+...+
T Consensus 199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 9999999987765311 0 134578999998776555444
No 389
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.33 E-value=1.3 Score=44.00 Aligned_cols=214 Identities=16% Similarity=0.072 Sum_probs=119.1
Q ss_pred EEEEEcCCC--eEEEEECCCc-EEEEeCCCCcEEEEEcCcCCc--EEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCC
Q 004924 482 TYFILLPQD--LFAFGFDDSS-ILVHCPCTKKTKAKLKGHQNR--ITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGW 551 (723)
Q Consensus 482 ~~l~~~p~~--~l~sgs~dg~-I~iwd~~~~~~~~~l~~~~~~--i~~l~~spdg~~l~s~s~d-----g~I~vwd~~~~ 551 (723)
..++++|.. -++.+-.-|+ ..++|..+++....+...++. .-.=.|||||.+|...-.| |.|-|||.+.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 357888877 5666666664 568898887666554322111 1123699999998865443 67999999863
Q ss_pred ceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCC-------------------cEEEEECCCCceeEEecCC--
Q 004924 552 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEG-------------------QIDVYEAPTLNHTSQLVPD-- 610 (723)
Q Consensus 552 ~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg-------------------~I~vwd~~~~~~~~~~~~~-- 610 (723)
- ..+-.+. .|. -....+.|.+||+.+++...| ++.+.|..+|+.+.+....
T Consensus 151 f----qrvgE~~-t~G---iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~ 222 (366)
T COG3490 151 F----QRVGEFS-THG---IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPAS 222 (366)
T ss_pred c----ceecccc-cCC---cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchh
Confidence 1 1122121 222 345678999999998873221 2455665666665544332
Q ss_pred CCCCCeEEEEEeeCCcEEEEEeCCCc-----EEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEE
Q 004924 611 KMDLPITYATYSCDGKCIYVSCKSGH-----VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 685 (723)
Q Consensus 611 ~h~~~v~~l~~spdg~~l~sgs~dg~-----I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 685 (723)
.+...|..++..+||..++.+-..|- --+=....|+.+.-+....-... .-.-|+-+++.+-.++-..+|.=
T Consensus 223 l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~---~~anYigsiA~n~~~glV~lTSP 299 (366)
T COG3490 223 LRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTA---AFANYIGSIAANRRDGLVALTSP 299 (366)
T ss_pred hhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHH---HHHhhhhheeecccCCeEEEecC
Confidence 34566788888888876654432221 11111223333333221100000 00112447888774444444444
Q ss_pred CCCcEEEEecCCCceeeecCC
Q 004924 686 TNGRVHVIEPLESEVEWGKLP 706 (723)
Q Consensus 686 ~Dg~v~iWd~~~~~~~w~~~~ 706 (723)
..+..-|||..+|+-+-..+.
T Consensus 300 ~GN~~vi~da~tG~vv~~a~l 320 (366)
T COG3490 300 RGNRAVIWDAATGAVVSEAAL 320 (366)
T ss_pred CCCeEEEEEcCCCcEEecccc
Confidence 556778999999986544443
No 390
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.31 E-value=0.34 Score=54.91 Aligned_cols=223 Identities=15% Similarity=0.112 Sum_probs=115.0
Q ss_pred CcEEEEEcCCCcEEEEEeCCC-CCeEEEEEcCCC-eEEEEECC-C-----cEEEEeCCCCcEEEEEcC-cCCcEEEEEEc
Q 004924 458 GKISIFSLETFQTLATFANPP-PIATYFILLPQD-LFAFGFDD-S-----SILVHCPCTKKTKAKLKG-HQNRITCLAYS 528 (723)
Q Consensus 458 g~I~vwd~~~~~~~~~~~~~~-~~v~~l~~~p~~-~l~sgs~d-g-----~I~iwd~~~~~~~~~l~~-~~~~i~~l~~s 528 (723)
..+..+|..+++....-.-.. ..-.+++.. ++ ..++|+.| | ++..||..+++-.. +.. .......-.-.
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~ 378 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAV 378 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEE
Confidence 357788888775443322111 122234443 45 78888888 3 68889988776333 211 11111111112
Q ss_pred CCCCEEEEEeCCCc-----EEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEE-ccCCCEEEE-EcC------CcEEE
Q 004924 529 LSLNVLVSSGADAQ-----LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF-HPDQIHLLS-IHE------GQIDV 595 (723)
Q Consensus 529 pdg~~l~s~s~dg~-----I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~-spdg~~l~~-s~d------g~I~v 595 (723)
-+|...++|+.||. +-.||..+.+- .....+.. ....... .-+|+..++ |.+ .++..
T Consensus 379 l~g~iYavGG~dg~~~l~svE~YDp~~~~W---~~va~m~~-------~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~ 448 (571)
T KOG4441|consen 379 LDGKLYAVGGFDGEKSLNSVECYDPVTNKW---TPVAPMLT-------RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVEC 448 (571)
T ss_pred ECCEEEEEeccccccccccEEEecCCCCcc---cccCCCCc-------ceeeeEEEEECCEEEEEcCcCCCccccceEEE
Confidence 26778888998864 67788776321 11111111 1111111 223444444 433 35788
Q ss_pred EECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCc-----EEEEECCCCcEEEEeecccccCCCCccCccceEE
Q 004924 596 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH-----VKVFDTSTLELRCQINLTAYAQPGTISLELYPLV 670 (723)
Q Consensus 596 wd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~-----I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 670 (723)
||..+++....-... ......-.-.-++...+.|+.|+. |..||..+.+-... ... .. ...... .
T Consensus 449 YDP~t~~W~~~~~M~--~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~~m-~~----~rs~~g--~ 518 (571)
T KOG4441|consen 449 YDPETNTWTLIAPMN--TRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV-APM-TS----PRSAVG--V 518 (571)
T ss_pred EcCCCCceeecCCcc--cccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEc-ccC-cc----cccccc--E
Confidence 998876653221111 111111122347777888887763 67788877654332 110 00 011111 2
Q ss_pred EEEecCCCCEEEEEECCC-----cEEEEecCCCceeeecCCC
Q 004924 671 IAAHPLEPNRIALGLTNG-----RVHVIEPLESEVEWGKLPF 707 (723)
Q Consensus 671 v~~sp~d~~~las~s~Dg-----~v~iWd~~~~~~~w~~~~~ 707 (723)
+.+ ++...++||.|| +|..||+.+. .|....+
T Consensus 519 ~~~---~~~ly~vGG~~~~~~l~~ve~ydp~~d--~W~~~~~ 555 (571)
T KOG4441|consen 519 VVL---GGKLYAVGGFDGNNNLNTVECYDPETD--TWTEVTE 555 (571)
T ss_pred EEE---CCEEEEEecccCccccceeEEcCCCCC--ceeeCCC
Confidence 222 567888888886 6778888776 4877554
No 391
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.30 E-value=1.6 Score=44.89 Aligned_cols=278 Identities=13% Similarity=0.057 Sum_probs=125.2
Q ss_pred CCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCEE
Q 004924 374 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 452 (723)
Q Consensus 374 ~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l 452 (723)
...+..|.|..+..-.+. +..++| +.... |... |+........ ...-...++.|. +..+
T Consensus 16 ~~~l~dV~F~d~~~G~~V-G~~g~i--l~T~D-----GG~t-------W~~~~~~~~~-----~~~~~l~~I~f~~~~g~ 75 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAV-GAYGTI--LKTTD-----GGKT-------WQPVSLDLDN-----PFDYHLNSISFDGNEGW 75 (302)
T ss_dssp SS-EEEEEESSSS-EEEE-ETTTEE--EEESS-----TTSS--------EE-----S----------EEEEEEEETTEEE
T ss_pred CCceEEEEEecCCEEEEE-ecCCEE--EEECC-----CCcc-------ccccccCCCc-----cceeeEEEEEecCCceE
Confidence 568899999855554444 455654 33321 1111 4432211000 012235677777 4444
Q ss_pred EEEeCCcEEEEEcCCCcEEEEEe---CCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEE-EEEcCcCCcEEEEEEc
Q 004924 453 FSASGGKISIFSLETFQTLATFA---NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTK-AKLKGHQNRITCLAYS 528 (723)
Q Consensus 453 ~s~sdg~I~vwd~~~~~~~~~~~---~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~-~~l~~~~~~i~~l~~s 528 (723)
++|..+ +.+...+.|+.-..+. .-......+....++....++..|.|+.= .+.|+.- .....-.+.+..+.-+
T Consensus 76 ivG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~ 153 (302)
T PF14870_consen 76 IVGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRS 153 (302)
T ss_dssp EEEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-
T ss_pred EEcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEEC
Confidence 544455 3344444454433332 11223333444344422223445554432 2334332 3334456778899999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEEC-CCCceeEE-
Q 004924 529 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA-PTLNHTSQ- 606 (723)
Q Consensus 529 pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~-~~~~~~~~- 606 (723)
+||+++++++......-||--.. ...+.. .... ..|.++.|+|++...+++..|.|+.=+. ...+....
T Consensus 154 ~dG~~vavs~~G~~~~s~~~G~~---~w~~~~---r~~~---~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~ 224 (302)
T PF14870_consen 154 SDGRYVAVSSRGNFYSSWDPGQT---TWQPHN---RNSS---RRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEP 224 (302)
T ss_dssp TTS-EEEEETTSSEEEEE-TT-S---S-EEEE-----SS---S-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---
T ss_pred CCCcEEEEECcccEEEEecCCCc---cceEEc---cCcc---ceehhceecCCCCEEEEeCCcEEEEccCCCCccccccc
Confidence 99998888766555667775431 011111 1112 6899999999998888888888888772 22222111
Q ss_pred -ecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEE
Q 004924 607 -LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 685 (723)
Q Consensus 607 -~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 685 (723)
.........+..++|.+++...++|+ .|.+ +.....|+-=........ .....+ .+.|.+ . +.-...+
T Consensus 225 ~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~-----~~~n~~--~i~f~~-~-~~gf~lG 293 (302)
T PF14870_consen 225 IIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGEN-----VPSNLY--RIVFVN-P-DKGFVLG 293 (302)
T ss_dssp B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTT-----SSS-----EEEEEE-T-TEEEEE-
T ss_pred cCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccC-----CCCceE--EEEEcC-C-CceEEEC
Confidence 11111244589999998887777665 4544 344555543333221100 012234 888876 3 4555556
Q ss_pred CCCcEEEE
Q 004924 686 TNGRVHVI 693 (723)
Q Consensus 686 ~Dg~v~iW 693 (723)
.+|.|--|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 88887655
No 392
>PHA02713 hypothetical protein; Provisional
Probab=96.13 E-value=0.37 Score=54.67 Aligned_cols=194 Identities=12% Similarity=0.031 Sum_probs=96.3
Q ss_pred CC-eEEEEECC------CcEEEEeCCCCcEEEEEcCcC-CcEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCceee
Q 004924 489 QD-LFAFGFDD------SSILVHCPCTKKTKAKLKGHQ-NRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLC 555 (723)
Q Consensus 489 ~~-~l~sgs~d------g~I~iwd~~~~~~~~~l~~~~-~~i~~l~~spdg~~l~s~s~dg-----~I~vwd~~~~~~~~ 555 (723)
++ .+++|+.+ ..+..||..+++.. .+..-. ..-......-+|+..+.|+.++ ++..||..+.+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~--- 378 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDK--- 378 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCe---
Confidence 55 66677643 34778888776432 221111 1111112223567777787654 47889987642
Q ss_pred ceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cC-----------------------CcEEEEECCCCceeEEecCCC
Q 004924 556 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE-----------------------GQIDVYEAPTLNHTSQLVPDK 611 (723)
Q Consensus 556 ~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~d-----------------------g~I~vwd~~~~~~~~~~~~~~ 611 (723)
...+..++.... ....+++ +|+..+.| .+ ..+..||..+.+-... .+ -
T Consensus 379 W~~~~~mp~~r~----~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v-~~-m 450 (557)
T PHA02713 379 WKMLPDMPIALS----SYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL-PN-F 450 (557)
T ss_pred EEECCCCCcccc----cccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec-CC-C
Confidence 122222222211 1112222 45544443 32 2477788876654211 11 1
Q ss_pred CCCCeEEEEEeeCCcEEEEEeCC------CcEEEEECCC-CcE--EEEeecccccCCCCccCccceEEEEEecCCCCEEE
Q 004924 612 MDLPITYATYSCDGKCIYVSCKS------GHVKVFDTST-LEL--RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 682 (723)
Q Consensus 612 h~~~v~~l~~spdg~~l~sgs~d------g~I~iwd~~~-~~~--~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la 682 (723)
........+..-+++..+.|+.+ ..+..||..+ .+- +..+... .. ..+++.. ++.+.+
T Consensus 451 ~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~--------r~---~~~~~~~--~~~iyv 517 (557)
T PHA02713 451 WTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR--------LS---ALHTILH--DNTIMM 517 (557)
T ss_pred CcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc--------cc---cceeEEE--CCEEEE
Confidence 11111122223467766667654 2467888886 332 2222110 00 1122222 578999
Q ss_pred EEECCC--cEEEEecCCCceeeecCCCCc
Q 004924 683 LGLTNG--RVHVIEPLESEVEWGKLPFTD 709 (723)
Q Consensus 683 s~s~Dg--~v~iWd~~~~~~~w~~~~~~~ 709 (723)
+||.|| ++-.||+.+. +|....++-
T Consensus 518 ~Gg~~~~~~~e~yd~~~~--~W~~~~~~~ 544 (557)
T PHA02713 518 LHCYESYMLQDTFNVYTY--EWNHICHQH 544 (557)
T ss_pred EeeecceeehhhcCcccc--cccchhhhc
Confidence 999998 7778888775 488765543
No 393
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.04 E-value=0.02 Score=40.62 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=30.5
Q ss_pred eEEEEEecCCCCEEEEEECCCcEEEEecCCCceeee
Q 004924 668 PLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG 703 (723)
Q Consensus 668 ~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~w~ 703 (723)
+..++|+| ..+++|.++.||.|.++.+ ++++.|+
T Consensus 14 v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qriw~ 47 (47)
T PF12894_consen 14 VSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQRIWS 47 (47)
T ss_pred EEEEEECC-CCCEEEEEECCCeEEEEEC-CCcCccC
Confidence 44999999 7899999999999999999 8887774
No 394
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.03 E-value=0.12 Score=59.63 Aligned_cols=106 Identities=13% Similarity=0.124 Sum_probs=75.6
Q ss_pred CeEEEEEeCCEEEEEe-CCcEEEEEcCCCcE-EEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcC
Q 004924 441 SISCFALRGSHLFSAS-GGKISIFSLETFQT-LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG 517 (723)
Q Consensus 441 ~V~~v~~s~~~l~s~s-dg~I~vwd~~~~~~-~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~ 517 (723)
.+.+.+.-+..++.|+ .|.+-..|+...-. ...=....++|++++|+.+| .++.|-.+|.|.+||+..++.++.+..
T Consensus 91 ~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e 170 (1206)
T KOG2079|consen 91 GVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE 170 (1206)
T ss_pred ceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee
Confidence 3444444466788888 68888888754311 11112345789999999999 999999999999999999999998877
Q ss_pred cCCcEEEE---EEcCCCCEEEEEeCCCcEEEEeC
Q 004924 518 HQNRITCL---AYSLSLNVLVSSGADAQLCVWDA 548 (723)
Q Consensus 518 ~~~~i~~l---~~spdg~~l~s~s~dg~I~vwd~ 548 (723)
|..+...+ .+..++..++++...|. +|.+
T Consensus 171 ~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 171 HGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 76665554 34456667888777776 5554
No 395
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.96 E-value=3 Score=44.93 Aligned_cols=281 Identities=15% Similarity=0.086 Sum_probs=150.4
Q ss_pred CCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-------CCEEEEEeCC
Q 004924 386 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-------GSHLFSASGG 458 (723)
Q Consensus 386 g~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-------~~~l~s~sdg 458 (723)
...++.||..|.++||+...... +++ ..++.. .-..+|..+..- ...||+-.-.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~--------------~~~-~lllE~----~l~~PILqv~~G~F~s~~~~~~LaVLhP~ 97 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEF--------------QPE-DLLLET----QLKDPILQVECGKFVSGSEDLQLAVLHPR 97 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCC--------------CCc-cEEEEE----ecCCcEEEEEeccccCCCCcceEEEecCC
Confidence 46899999999999999754322 111 011111 134566655543 2345555567
Q ss_pred cEEEEEcCC--Cc-------EEEEEeCCC--CCeEEEEEcC----CC--eEEEEECCCcEEEEeCCCCcEEEEEcCcCCc
Q 004924 459 KISIFSLET--FQ-------TLATFANPP--PIATYFILLP----QD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 521 (723)
Q Consensus 459 ~I~vwd~~~--~~-------~~~~~~~~~--~~v~~l~~~p----~~--~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~ 521 (723)
.+.||.+.. |. .+..+..|. .....+++-| .+ .+++-+.||.+.+|+-+.-...+.+.+ ---
T Consensus 98 kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~ll 176 (418)
T PF14727_consen 98 KLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLL 176 (418)
T ss_pred EEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCC
Confidence 777777621 11 122222222 2223344332 32 788999999999999665443344443 222
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCC---C---c------------eeeceeeeeeecCCCCCCCCeEEEEE---cc
Q 004924 522 ITCLAYSLSLNVLVSSGADAQLCVWDAVG---W---K------------KLCSKFLHSFQTGLVPETTIVNHIQF---HP 580 (723)
Q Consensus 522 i~~l~~spdg~~l~s~s~dg~I~vwd~~~---~---~------------~~~~~~l~~~~~~~~~~~~~v~~l~~---sp 580 (723)
...+.|.+....+++++.+..+.-|.... . . .....+-.++.-| ..+..+.. +.
T Consensus 177 PgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlG-----E~~l~i~v~~~~~ 251 (418)
T PF14727_consen 177 PGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLG-----EQALDIQVVRFSS 251 (418)
T ss_pred CcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECC-----ceeEEEEEEEcCC
Confidence 33567888888899999988888886532 0 0 0000111112222 23434333 33
Q ss_pred CCCEEEEEcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEee----CC---cEEEEEeCCCcEEEEECCCCcEEEEeec
Q 004924 581 DQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC----DG---KCIYVSCKSGHVKVFDTSTLELRCQINL 653 (723)
Q Consensus 581 dg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~sp----dg---~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 653 (723)
....+++=.+..+.+.+- +|......+.+ ..+.....|.. ++ ..++.++.++++.||.=. ++++....
T Consensus 252 ~~~~IvvLger~Lf~l~~-~G~l~~~krLd--~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~WsA~l 326 (418)
T PF14727_consen 252 SESDIVVLGERSLFCLKD-NGSLRFQKRLD--YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLVWSAQL 326 (418)
T ss_pred CCceEEEEecceEEEEcC-CCeEEEEEecC--CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEEEecCC
Confidence 334444434566777766 46554444331 22222222221 22 258889999999998644 33443322
Q ss_pred ccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCceeeecC
Q 004924 654 TAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKL 705 (723)
Q Consensus 654 ~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~w~~~ 705 (723)
. ..++.+.-..|.. -...|++-+.+|.+.+-=+-+.-.....+
T Consensus 327 ~--------~~PVal~v~~~~~-~~G~IV~Ls~~G~L~v~YLGTdPs~~~~p 369 (418)
T PF14727_consen 327 P--------HVPVALSVANFNG-LKGLIVSLSDEGQLSVSYLGTDPSLFQVP 369 (418)
T ss_pred C--------CCCEEEEecccCC-CCceEEEEcCCCcEEEEEeCCCCccccCC
Confidence 1 2234333333444 45689999999999998776654444433
No 396
>PHA02713 hypothetical protein; Provisional
Probab=95.95 E-value=0.53 Score=53.43 Aligned_cols=185 Identities=14% Similarity=0.103 Sum_probs=88.1
Q ss_pred CCEEEEEe-C------CcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCC-----cEEEEeCCCCcEEE--
Q 004924 449 GSHLFSAS-G------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKA-- 513 (723)
Q Consensus 449 ~~~l~s~s-d------g~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg-----~I~iwd~~~~~~~~-- 513 (723)
+...+.|| + ..+..||..+......-.-...........-+| ..+.||.++ ++..||..+.+-..
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 55566666 4 247788887765422111111111111222356 667777654 48889988754322
Q ss_pred EEcCcCCcEEEEEEcCCCCEEEEEeCCC-----------------------cEEEEeCCCCceeeceeeeeeecCCCCCC
Q 004924 514 KLKGHQNRITCLAYSLSLNVLVSSGADA-----------------------QLCVWDAVGWKKLCSKFLHSFQTGLVPET 570 (723)
Q Consensus 514 ~l~~~~~~i~~l~~spdg~~l~s~s~dg-----------------------~I~vwd~~~~~~~~~~~l~~~~~~~~~~~ 570 (723)
.+.........+ .-+|+..+.|+.++ .+..||..+.+- ..+..++....
T Consensus 384 ~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W---~~v~~m~~~r~--- 455 (557)
T PHA02713 384 DMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW---ETLPNFWTGTI--- 455 (557)
T ss_pred CCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE---eecCCCCcccc---
Confidence 111111111112 22577777777542 466788776421 22222222211
Q ss_pred CCeEEEEEccCCCEEEE-EcC------CcEEEEECCC-CceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCC--cEEEE
Q 004924 571 TIVNHIQFHPDQIHLLS-IHE------GQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG--HVKVF 640 (723)
Q Consensus 571 ~~v~~l~~spdg~~l~~-s~d------g~I~vwd~~~-~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg--~I~iw 640 (723)
. .+++.. +|+..+. |.+ ..+..||..+ .+-...-...........+ .-+|+..++|+.|| .+..|
T Consensus 456 -~-~~~~~~-~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~--~~~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 456 -R-PGVVSH-KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI--LHDNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred -c-CcEEEE-CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE--EECCEEEEEeeecceeehhhc
Confidence 1 122222 3444444 332 2467899886 4432111111111112222 23788888999888 66777
Q ss_pred ECCCCc
Q 004924 641 DTSTLE 646 (723)
Q Consensus 641 d~~~~~ 646 (723)
|..+.+
T Consensus 531 d~~~~~ 536 (557)
T PHA02713 531 NVYTYE 536 (557)
T ss_pred Cccccc
Confidence 777665
No 397
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.88 E-value=0.012 Score=55.95 Aligned_cols=104 Identities=9% Similarity=0.047 Sum_probs=57.2
Q ss_pred CEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeE-EEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCC
Q 004924 583 IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPIT-YATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG 660 (723)
Q Consensus 583 ~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~-~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g 660 (723)
.-+++ +.+|.|++|+.............. ...|. .+.-..++.+..+++.||.|+.|++..++.+.....|.+
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~-~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~---- 145 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSG-EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF---- 145 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcc-cccceeccccccccceeEEeccCCceeeeccccCceeeeeccccC----
Confidence 44555 599999999875211111111111 12222 222234556888999999999999999887776643221
Q ss_pred CccCccceEEEEEecCCCCEEEEE--ECCCcEEEEecCC
Q 004924 661 TISLELYPLVIAAHPLEPNRIALG--LTNGRVHVIEPLE 697 (723)
Q Consensus 661 ~~~~~v~~~~v~~sp~d~~~las~--s~Dg~v~iWd~~~ 697 (723)
.+.. ...-+. .+..++++ |.|..++.|++..
T Consensus 146 ---~~~e--~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 146 ---ESGE--ELIVVG-SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ---CCcc--eeEEec-CCceEEeeccccchhhhhcchhh
Confidence 1111 222222 34455555 6666666666543
No 398
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.58 E-value=3 Score=44.45 Aligned_cols=129 Identities=18% Similarity=0.074 Sum_probs=62.9
Q ss_pred CCcEEEEEcCCCcEEEEEeCCC-C-CeEEEEEc--CCC--eEEEEECCCcEEEEeC-CCCcE----EEEEc-----Cc--
Q 004924 457 GGKISIFSLETFQTLATFANPP-P-IATYFILL--PQD--LFAFGFDDSSILVHCP-CTKKT----KAKLK-----GH-- 518 (723)
Q Consensus 457 dg~I~vwd~~~~~~~~~~~~~~-~-~v~~l~~~--p~~--~l~sgs~dg~I~iwd~-~~~~~----~~~l~-----~~-- 518 (723)
..++.+||+.+.+.++++.-.. + ....+.|. |+. -++.+.-.++|..|-- ..++- +..+. +-
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 4589999999999999997433 2 34566664 444 3444445556665543 33421 11121 11
Q ss_pred ----------CCcEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeeceeeeeeecCCC------------CCCCCeEE
Q 004924 519 ----------QNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLV------------PETTIVNH 575 (723)
Q Consensus 519 ----------~~~i~~l~~spdg~~l~s~s-~dg~I~vwd~~~~~~~~~~~l~~~~~~~~------------~~~~~v~~ 575 (723)
..-|++|..|.|.++|..++ .+|.|+.||+..-.. -+...++.-+-. +-.+....
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~--Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqM 378 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN--PKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQM 378 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS---EEEEEEE-BTTTT-B--TTS------S----
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC--CcEEeEEEECcEeccCCCccccccccCCCCCe
Confidence 24578999999999987766 589999999986321 111111111100 00133467
Q ss_pred EEEccCCCEEEE
Q 004924 576 IQFHPDQIHLLS 587 (723)
Q Consensus 576 l~~spdg~~l~~ 587 (723)
+..|.||+.+++
T Consensus 379 vqlS~DGkRlYv 390 (461)
T PF05694_consen 379 VQLSLDGKRLYV 390 (461)
T ss_dssp EEE-TTSSEEEE
T ss_pred EEEccCCeEEEE
Confidence 888888888876
No 399
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.54 E-value=0.5 Score=51.44 Aligned_cols=145 Identities=8% Similarity=-0.000 Sum_probs=88.8
Q ss_pred CCCeEEEEEe-CCEEEEEe----CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-----eEEEEECCCcEEEEeCCC
Q 004924 439 KDSISCFALR-GSHLFSAS----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-----LFAFGFDDSSILVHCPCT 508 (723)
Q Consensus 439 ~~~V~~v~~s-~~~l~s~s----dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-----~l~sgs~dg~I~iwd~~~ 508 (723)
-.++..++|. |+.++-.. +|.+++=|- ..+ +.-..|..+.|.|-+ .+++....+.|.||.+.-
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCCc---cEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4578899999 77655432 455554332 122 333457889999863 566777889999998752
Q ss_pred -----CcEEEEEcC---cCCc--EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeee-eeecCCCCCCCCeEEEE
Q 004924 509 -----KKTKAKLKG---HQNR--ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH-SFQTGLVPETTIVNHIQ 577 (723)
Q Consensus 509 -----~~~~~~l~~---~~~~--i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~-~~~~~~~~~~~~v~~l~ 577 (723)
++.+..-.. ..-+ -..+.|+|....|++-.....=.++++.... ..+. .+ .++ +-|.|.+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~----srVkaDi-~~~----G~IhCAC 162 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDS----SRVKADI-KTS----GLIHCAC 162 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCC----ceEEEec-cCC----ceEEEEE
Confidence 222221111 1111 2357899998888776665554566665421 1111 12 222 7899999
Q ss_pred EccCCCEEEEE--cCCcEEEEECC
Q 004924 578 FHPDQIHLLSI--HEGQIDVYEAP 599 (723)
Q Consensus 578 ~spdg~~l~~s--~dg~I~vwd~~ 599 (723)
|.+||+.|+++ +.=.-++||-.
T Consensus 163 WT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 163 WTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ecCcCCEEEEEeCCeEEEEEecCc
Confidence 99999998875 43456889854
No 400
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.51 E-value=0.82 Score=45.67 Aligned_cols=170 Identities=8% Similarity=0.086 Sum_probs=107.9
Q ss_pred EcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcE
Q 004924 515 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQI 593 (723)
Q Consensus 515 l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I 593 (723)
+.|....+.++.|+|+.+.|++......-.||=...|+.+...++.- - .....+.+..+|++.++. .++.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g---~-----~DpE~Ieyig~n~fvi~dER~~~l 152 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG---F-----SDPETIEYIGGNQFVIVDERDRAL 152 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc---c-----CChhHeEEecCCEEEEEehhcceE
Confidence 34555569999999999999988888777777666776666555541 1 345578888888888885 78888
Q ss_pred EEEECCCCceeEE-----ec--CCCC-CCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCc-cC
Q 004924 594 DVYEAPTLNHTSQ-----LV--PDKM-DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI-SL 664 (723)
Q Consensus 594 ~vwd~~~~~~~~~-----~~--~~~h-~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~-~~ 664 (723)
.++.+.....+.. +. ...+ +...-.++|+|....+..+-+-.=+.||.+..+... +..+... ++. ..
T Consensus 153 ~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~--l~~~~~~--~~~~~~ 228 (316)
T COG3204 153 YLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS--LSVHASL--DPTADR 228 (316)
T ss_pred EEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc--ccccccc--Cccccc
Confidence 8887765432221 11 1112 566789999999988888888777777766633211 1111000 000 11
Q ss_pred ccc---eEEEEEecCCCCEEEEEECCCcEEEEecC
Q 004924 665 ELY---PLVIAAHPLEPNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 665 ~v~---~~~v~~sp~d~~~las~s~Dg~v~iWd~~ 696 (723)
.++ +.++.|++..+.+++-+.+++.+.-.|..
T Consensus 229 ~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 229 DLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred ceEeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 111 33788888666677766666666666653
No 401
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.46 E-value=2.7 Score=48.71 Aligned_cols=72 Identities=17% Similarity=0.117 Sum_probs=49.1
Q ss_pred CCeEEEEEcCCC-eEEEEECCCcEEEEeCC---------CCcE---EEEE--------cCcCCcEEEEEEcCC---CCEE
Q 004924 479 PIATYFILLPQD-LFAFGFDDSSILVHCPC---------TKKT---KAKL--------KGHQNRITCLAYSLS---LNVL 534 (723)
Q Consensus 479 ~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~---------~~~~---~~~l--------~~~~~~i~~l~~spd---g~~l 534 (723)
-.|..+..+|+| .++..|..|.+.+.=.+ .|+. .+.+ ..+...|..+.|+|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 467889999999 88877776643332111 1111 1111 124467889999996 5789
Q ss_pred EEEeCCCcEEEEeCCC
Q 004924 535 VSSGADAQLCVWDAVG 550 (723)
Q Consensus 535 ~s~s~dg~I~vwd~~~ 550 (723)
++-+.|+++|+||+..
T Consensus 165 ~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEecCCEEEEEecCC
Confidence 9999999999999975
No 402
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.46 E-value=0.024 Score=54.04 Aligned_cols=102 Identities=15% Similarity=0.051 Sum_probs=62.8
Q ss_pred CCEEEEEe-CCcEEEEEcCC-CcEEEEEeCCCCCeEEE-EEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcC-CcEE
Q 004924 449 GSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYF-ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRIT 523 (723)
Q Consensus 449 ~~~l~s~s-dg~I~vwd~~~-~~~~~~~~~~~~~v~~l-~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~-~~i~ 523 (723)
+..+++|+ +|.|.+|+..- |.....+......+.++ .-..++ +.++++.||.|+.|++.-++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 56677777 99999998762 12111111222233232 223344 78899999999999998888777776676 4444
Q ss_pred EEEEcCCCCEEEEE--eCCCcEEEEeCCC
Q 004924 524 CLAYSLSLNVLVSS--GADAQLCVWDAVG 550 (723)
Q Consensus 524 ~l~~spdg~~l~s~--s~dg~I~vwd~~~ 550 (723)
....+..++.++++ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 44444445555555 5566666666543
No 403
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=0.059 Score=62.02 Aligned_cols=102 Identities=16% Similarity=0.195 Sum_probs=71.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecC
Q 004924 531 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVP 609 (723)
Q Consensus 531 g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~ 609 (723)
+..++.|+..|.+-..|+.+.- .++. ...+.. ++|++++|+.+|+.++.| .+|.|.+||+..++..+.+..
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL----~~~~--~ne~v~--~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e 170 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNL----GPLH--QNERVQ--GPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE 170 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhccc----chhh--cCCccC--CcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee
Confidence 4568888888888888887631 1111 122222 899999999999999998 899999999999998887764
Q ss_pred CCC-CCCeEEEEEeeCCcEEEEEeCCCcEEEEEC
Q 004924 610 DKM-DLPITYATYSCDGKCIYVSCKSGHVKVFDT 642 (723)
Q Consensus 610 ~~h-~~~v~~l~~spdg~~l~sgs~dg~I~iwd~ 642 (723)
.++ ...|..+.+..++..++++..-|. +|.+
T Consensus 171 ~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 171 HGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 322 223344445556667888877776 4543
No 404
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.30 E-value=2.3 Score=45.68 Aligned_cols=205 Identities=13% Similarity=0.086 Sum_probs=111.3
Q ss_pred CCeEEEEECCCcEEEEeCCCCcEEEEEcCc--CCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCC
Q 004924 489 QDLFAFGFDDSSILVHCPCTKKTKAKLKGH--QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 566 (723)
Q Consensus 489 ~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~--~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~ 566 (723)
++.+.++..+|.|.-.|..+++.+.....- ...+..-.+..+|+ ++.++.++.++.+|.++|+......... .
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~---~- 142 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG---S- 142 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC---C-
Confidence 446666678888888888888765433221 12222223333665 7788889999999998876655444331 0
Q ss_pred CCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCCC-CCCCeEEEEEeeCCcEEEEEeC--CCcEEEEECC
Q 004924 567 VPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDK-MDLPITYATYSCDGKCIYVSCK--SGHVKVFDTS 643 (723)
Q Consensus 567 ~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~-h~~~v~~l~~spdg~~l~sgs~--dg~I~iwd~~ 643 (723)
..+..-..-.++..+..+.++.+...|..+|+..-.+.... -...+...-. .....++.+.. ++.+.-.|..
T Consensus 143 ----~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~ 217 (370)
T COG1520 143 ----PYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAE 217 (370)
T ss_pred ----eEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEcc
Confidence 01222223334433333467788888887777755543211 0111111111 22334555555 6678888888
Q ss_pred CCcEEEEeecccccCCCCc--cCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCceeeecCCC
Q 004924 644 TLELRCQINLTAYAQPGTI--SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 707 (723)
Q Consensus 644 ~~~~~~~~~~~~~~~~g~~--~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~w~~~~~ 707 (723)
+|................. ...+....+. . + .-+..++.++.+.-.+..+++..|..+.+
T Consensus 218 ~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~-v--~-~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 218 DGTLKWSQKVSQTIGRTAISTTPAVDGGPVY-V--D-GGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred CCcEeeeeeeecccCcccccccccccCceEE-E--C-CcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 9988776432211110000 0011111111 1 1 23466677888999999999999988764
No 405
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.29 E-value=7.9 Score=45.09 Aligned_cols=309 Identities=12% Similarity=0.068 Sum_probs=170.5
Q ss_pred CCCCEEEEEeCCCeEEEEeecccCCCCce---eEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCccccc
Q 004924 335 PDADSAVCAKSLEKSVNLKLQLINEPSEC---RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 411 (723)
Q Consensus 335 pdg~~la~~s~dg~v~iw~~~~~~~~~~~---~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g 411 (723)
-|+.++.++..||.+.-+.++.. ++.. +...+ -+.++.--.|+..++.-+.+..|.-..+|.....
T Consensus 593 ~d~~yLlvalgdG~l~~fv~d~~--tg~lsd~Kk~~l----Gt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k----- 661 (1096)
T KOG1897|consen 593 GDIHYLLVALGDGALLYFVLDIN--TGQLSDRKKVTL----GTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK----- 661 (1096)
T ss_pred ccceEEEEEcCCceEEEEEEEcc--cceEcccccccc----CCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc-----
Confidence 45788899999999866655532 2221 11111 3567777778776654455555665556653321
Q ss_pred ccceeeeeEEEecCCCeeeeeccCCCCCCCeEE-EEEe----CCEEEEEeCCcEEEEEcCCCcE--EEEEeCCCCCeEEE
Q 004924 412 EENVNMESQLYQPSSKLVMTNDIAADPKDSISC-FALR----GSHLFSASGGKISIFSLETFQT--LATFANPPPIATYF 484 (723)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-v~~s----~~~l~s~sdg~I~vwd~~~~~~--~~~~~~~~~~v~~l 484 (723)
.. +.+-+ -..+.. +.|+ ...++++..+.+++..++.-+. ++++. -......+
T Consensus 662 -Lv-------~spls------------~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI 720 (1096)
T KOG1897|consen 662 -LV-------YSPLS------------LKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRI 720 (1096)
T ss_pred -EE-------Eeccc------------hHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeec-CCCChhhe
Confidence 10 11111 011111 1233 5667888878888877665332 23332 22334566
Q ss_pred EEcCCC-eEEEEECC--------------CcEEEEeCCCCcEEEEEcC--c--CCcEEEEEEcCC-CCEEEEEeC-----
Q 004924 485 ILLPQD-LFAFGFDD--------------SSILVHCPCTKKTKAKLKG--H--QNRITCLAYSLS-LNVLVSSGA----- 539 (723)
Q Consensus 485 ~~~p~~-~l~sgs~d--------------g~I~iwd~~~~~~~~~l~~--~--~~~i~~l~~spd-g~~l~s~s~----- 539 (723)
++.+.. .+++.+.- ..++++|-++-+.+...+- . ...|.++.|..| +.++++|+.
T Consensus 721 ~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pd 800 (1096)
T KOG1897|consen 721 CYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPD 800 (1096)
T ss_pred EecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccC
Confidence 676644 44443321 1466777666554433221 1 134556668777 677777753
Q ss_pred -----CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCCCCCC
Q 004924 540 -----DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDL 614 (723)
Q Consensus 540 -----dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~ 614 (723)
.|.|.+|....+.. ++........ +.+.++..- +| .++++-+..|++|+..+.+.++.-. .+..
T Consensus 801 e~ep~~GRIivfe~~e~~~-----L~~v~e~~v~--Gav~aL~~f-ng-kllA~In~~vrLye~t~~~eLr~e~--~~~~ 869 (1096)
T KOG1897|consen 801 ENEPVNGRIIVFEFEELNS-----LELVAETVVK--GAVYALVEF-NG-KLLAGINQSVRLYEWTTERELRIEC--NISN 869 (1096)
T ss_pred CCCcccceEEEEEEecCCc-----eeeeeeeeec--cceeehhhh-CC-eEEEecCcEEEEEEccccceehhhh--cccC
Confidence 46777776655211 1101000000 445554433 24 4555666789999998775554432 3577
Q ss_pred CeEEEEEeeCCcEEEEEeCCCcEEEEECCC--CcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEE
Q 004924 615 PITYATYSCDGKCIYVSCKSGHVKVFDTST--LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV 692 (723)
Q Consensus 615 ~v~~l~~spdg~~l~sgs~dg~I~iwd~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~i 692 (723)
++..+...-.|..+++|.-=+.+.+...+. |.....-.- -.+-|.+++.+-. +..++.+..+|.+.+
T Consensus 870 ~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD---------~~p~Wmtaveil~--~d~ylgae~~gNlf~ 938 (1096)
T KOG1897|consen 870 PIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARD---------YNPNWMTAVEILD--DDTYLGAENSGNLFT 938 (1096)
T ss_pred CeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehh---------hCccceeeEEEec--CceEEeecccccEEE
Confidence 888999999999999998888877765554 334333221 2234445676654 455666667888877
Q ss_pred EecCC
Q 004924 693 IEPLE 697 (723)
Q Consensus 693 Wd~~~ 697 (723)
-...+
T Consensus 939 v~~d~ 943 (1096)
T KOG1897|consen 939 VRKDS 943 (1096)
T ss_pred EEecC
Confidence 76553
No 406
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.13 E-value=5.1 Score=47.00 Aligned_cols=186 Identities=12% Similarity=0.039 Sum_probs=98.3
Q ss_pred CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCe-------------EEEEEcC---CCeEEEEEC----------CCcE
Q 004924 449 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA-------------TYFILLP---QDLFAFGFD----------DSSI 501 (723)
Q Consensus 449 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v-------------~~l~~~p---~~~l~sgs~----------dg~I 501 (723)
+..++.++ |+.+.-.|.++|+....+... +.+ ..+.-.| ++.+++|+. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 45677777 999999999999988776321 111 0111112 335556643 6889
Q ss_pred EEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEcc
Q 004924 502 LVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 580 (723)
Q Consensus 502 ~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg-~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~sp 580 (723)
+-+|.++|+.+-.+..-.-..... .+.+.....++.+. ...-+|.+.+. +. +..+.. +..+..
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~--~~~g~~~~~gg~n~W~~~s~D~~~gl------vy-~ptGn~-------~pd~~g 402 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAP--PAPGETYTRNTPNSWSVASYDEKLGL------VY-LPMGNQ-------TPDQWG 402 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccC--CCCCCEeccCCCCccCceEEcCCCCe------EE-EeCCCc-------cccccC
Confidence 999999999987775311001100 11233222222111 23344544431 11 122211 001101
Q ss_pred CCCEEEE-EcCCcEEEEECCCCceeEEecCCCCC-------CCeEEEEEee-CCc---EEEEEeCCCcEEEEECCCCcEE
Q 004924 581 DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMD-------LPITYATYSC-DGK---CIYVSCKSGHVKVFDTSTLELR 648 (723)
Q Consensus 581 dg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~-------~~v~~l~~sp-dg~---~l~sgs~dg~I~iwd~~~~~~~ 648 (723)
..+.... -..+.|.-.|.++|+..-.+....|. ....-+.+.. +|+ .++.++.+|.++++|.++|+.+
T Consensus 403 ~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 403 GDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred CccccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 0110001 13456777888888877666543331 1111122322 563 7889999999999999999987
Q ss_pred EEe
Q 004924 649 CQI 651 (723)
Q Consensus 649 ~~~ 651 (723)
...
T Consensus 483 ~~~ 485 (764)
T TIGR03074 483 VPV 485 (764)
T ss_pred eec
Confidence 654
No 407
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.03 E-value=3.9 Score=40.51 Aligned_cols=201 Identities=10% Similarity=-0.020 Sum_probs=129.6
Q ss_pred eEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceee
Q 004924 481 ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 559 (723)
Q Consensus 481 v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l 559 (723)
-..++-.||| .-+++...+.|--.|..+|+....--+....-..+..-|||..-++-+.. .|.-.|-++.+... .+
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~-f~- 140 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR-FP- 140 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE-ee-
Confidence 3467788899 88888888889999999998876665666667788889998776654443 45556666643211 22
Q ss_pred eeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEE
Q 004924 560 HSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV 639 (723)
Q Consensus 560 ~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~i 639 (723)
++..|.. .......|.+.|..-.++..|.---.|-. ...+..+... ....-..+|..|||..-++.-.++.|-.
T Consensus 141 --lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa-~~~i~vfpaP-qG~gpyGi~atpdGsvwyaslagnaiar 214 (353)
T COG4257 141 --LPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPA-RNVISVFPAP-QGGGPYGICATPDGSVWYASLAGNAIAR 214 (353)
T ss_pred --cccccCC--CcccceeeCCCccEEEeeccccceecCcc-cCceeeeccC-CCCCCcceEECCCCcEEEEeccccceEE
Confidence 3333433 67889999999988887544322222322 1223344332 3556678999999999888888888888
Q ss_pred EECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 640 FDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 640 wd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
.|..++.. .++.... +.+.+ .. .+--+| -+..-+|-...+.++-+|+....
T Consensus 215 idp~~~~a-ev~p~P~----~~~~g-sR--riwsdp-ig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 215 IDPFAGHA-EVVPQPN----ALKAG-SR--RIWSDP-IGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred cccccCCc-ceecCCC----ccccc-cc--ccccCc-cCcEEEeccCCceeeEeCccccc
Confidence 88887743 3332221 11111 11 233344 57777777777888888887654
No 408
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.96 E-value=5.2 Score=41.23 Aligned_cols=159 Identities=9% Similarity=0.011 Sum_probs=81.8
Q ss_pred eCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 004924 475 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 553 (723)
Q Consensus 475 ~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~ 553 (723)
......+..+.-+++| ++++++......-||.-...-...-+.....|..+.|.|++...+. ...|.|+.=+......
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDGE 219 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCCCcc
Confidence 3455678888889999 7777765555567775432222222335678999999999876554 4888888776222110
Q ss_pred eeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecC-CCCCCCeEEEEEeeCCcEEEEEe
Q 004924 554 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSC 632 (723)
Q Consensus 554 ~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~-~~h~~~v~~l~~spdg~~l~sgs 632 (723)
.-.+++..+.... ..+..++|.+++...+++..|.+. .....|+.-..... ..-...++.+.|.++.+-++.|
T Consensus 220 ~w~~~~~~~~~~~----~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG- 293 (302)
T PF14870_consen 220 TWSEPIIPIKTNG----YGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG- 293 (302)
T ss_dssp EE---B-TTSS------S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--
T ss_pred ccccccCCcccCc----eeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-
Confidence 0111111011111 358999999998888888777654 45556665444432 1225568899998765555555
Q ss_pred CCCcEEEE
Q 004924 633 KSGHVKVF 640 (723)
Q Consensus 633 ~dg~I~iw 640 (723)
.+|.|-=|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 67776544
No 409
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.87 E-value=4.8 Score=40.43 Aligned_cols=169 Identities=9% Similarity=-0.002 Sum_probs=103.6
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeC-CCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcE
Q 004924 437 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN-PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT 511 (723)
Q Consensus 437 ~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~-~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~ 511 (723)
+-...+.++.|+ .+.|++.. ...-.||=..+|+.++++.- .-...-.+.+..+| +.++--.++.+.++.++....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 345559999999 66666666 56666666677999988862 12233467788788 666777788888887765532
Q ss_pred EEE-------Ec--Cc-CCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCC-CCCCCeEEEEEcc
Q 004924 512 KAK-------LK--GH-QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV-PETTIVNHIQFHP 580 (723)
Q Consensus 512 ~~~-------l~--~~-~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~-~~~~~v~~l~~sp 580 (723)
... +. .+ ......++|+|....+..+-+..-+.||.+..+...-.......+.... -....|.++.|++
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence 211 11 12 4567789999999999988888888888776432110000000000000 0014577888887
Q ss_pred CCCEEEE-E-cCCcEEEEECCCCceeEE
Q 004924 581 DQIHLLS-I-HEGQIDVYEAPTLNHTSQ 606 (723)
Q Consensus 581 dg~~l~~-s-~dg~I~vwd~~~~~~~~~ 606 (723)
....+++ | .++.+.-.|. .|..+..
T Consensus 243 ~~~~LLVLS~ESr~l~Evd~-~G~~~~~ 269 (316)
T COG3204 243 ITNSLLVLSDESRRLLEVDL-SGEVIEL 269 (316)
T ss_pred CCCcEEEEecCCceEEEEec-CCCeeee
Confidence 6655555 6 5566766776 4544433
No 410
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.84 E-value=0.073 Score=37.73 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=30.3
Q ss_pred CCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcE
Q 004924 613 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL 647 (723)
Q Consensus 613 ~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~ 647 (723)
...|..++|+|...+||.|+.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 567999999999999999999999999999 5543
No 411
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.70 E-value=0.73 Score=51.89 Aligned_cols=113 Identities=15% Similarity=0.186 Sum_probs=71.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEc--cCCCEEEE-EcCCcEEEEE
Q 004924 521 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH--PDQIHLLS-IHEGQIDVYE 597 (723)
Q Consensus 521 ~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~s--pdg~~l~~-s~dg~I~vwd 597 (723)
...-+.-+.-++..++-+....+.|||.+.+.......+ ..+ +.|.++.|. |+|+.+++ |..+.|.+|.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f----~~~----~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF----SED----DPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee----cCC----CceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 334444455455555555556799999998753222221 222 689999885 67877776 8889988875
Q ss_pred CC---------CCceeEEecCCCC-CCCeEEEEEeeCCcEEEEEeCCCcEEEEECC
Q 004924 598 AP---------TLNHTSQLVPDKM-DLPITYATYSCDGKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 598 ~~---------~~~~~~~~~~~~h-~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~ 643 (723)
-. +...+..+....+ ..+|.+.+|.++|.++++++ +.+.|++-.
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 32 1223444433333 36899999999998777664 668887754
No 412
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.70 E-value=7.6 Score=41.87 Aligned_cols=89 Identities=11% Similarity=-0.155 Sum_probs=55.5
Q ss_pred CCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceE-----------EEEEecCCCC-E
Q 004924 613 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPL-----------VIAAHPLEPN-R 680 (723)
Q Consensus 613 ~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----------~v~~sp~d~~-~ 680 (723)
...+.+++.+|++++.++...=|.|.++|+.++..+..+++....+. ..+.+. ...-.+.... +
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc----~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQC----GWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceE----EEEEeecccccccccccccCCCCcceEEE
Confidence 44578899999999888876669999999999988777764321100 000000 0000000011 2
Q ss_pred EEEEECCCcEEEEecCCCceeeecC
Q 004924 681 IALGLTNGRVHVIEPLESEVEWGKL 705 (723)
Q Consensus 681 las~s~Dg~v~iWd~~~~~~~w~~~ 705 (723)
++-+-.-|.|.||.+..|.+.....
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEE
Confidence 3455578999999999998775543
No 413
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.65 E-value=2.4 Score=42.74 Aligned_cols=150 Identities=18% Similarity=0.093 Sum_probs=83.5
Q ss_pred cEEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEE
Q 004924 521 RITCLAYSLSLNVLVSSG---ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVY 596 (723)
Q Consensus 521 ~i~~l~~spdg~~l~s~s---~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vw 596 (723)
.+.+.+++++|..++... ....++++..... ......+ ..+..-.|++++...++. .+...+++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-------~~~~~~g-----~~l~~PS~d~~g~~W~v~~~~~~~~~~ 92 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-------VRPVLTG-----GSLTRPSWDPDGWVWTVDDGSGGVRVV 92 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-------ceeeccC-----CccccccccCCCCEEEEEcCCCceEEE
Confidence 688899999999877665 3345666654431 1111222 467788999998777663 44555555
Q ss_pred -ECCCCcee-EEecCCCCCCCeEEEEEeeCCcEEEEEe---CCCcEEEEECC---CCcEEEEeecccccCCCCccCccce
Q 004924 597 -EAPTLNHT-SQLVPDKMDLPITYATYSCDGKCIYVSC---KSGHVKVFDTS---TLELRCQINLTAYAQPGTISLELYP 668 (723)
Q Consensus 597 -d~~~~~~~-~~~~~~~h~~~v~~l~~spdg~~l~sgs---~dg~I~iwd~~---~~~~~~~~~~~~~~~~g~~~~~v~~ 668 (723)
+..++... .......-...|..+.+||||..++... .++.|++=-+. .+. ...+.....+.. .....+
T Consensus 93 ~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~-~~~l~~~~~~~~---~~~~~v 168 (253)
T PF10647_consen 93 RDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGV-PRRLTGPRRVAP---PLLSDV 168 (253)
T ss_pred EecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCC-cceeccceEecc---cccCcc
Confidence 33333322 1222111122899999999999877655 35777776543 231 111111110100 111235
Q ss_pred EEEEEecCCCCEEEEEECC
Q 004924 669 LVIAAHPLEPNRIALGLTN 687 (723)
Q Consensus 669 ~~v~~sp~d~~~las~s~D 687 (723)
++++|.+ ++.+++.+...
T Consensus 169 ~~v~W~~-~~~L~V~~~~~ 186 (253)
T PF10647_consen 169 TDVAWSD-DSTLVVLGRSA 186 (253)
T ss_pred eeeeecC-CCEEEEEeCCC
Confidence 5999999 66665555433
No 414
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.51 E-value=1.4 Score=49.72 Aligned_cols=114 Identities=10% Similarity=0.038 Sum_probs=74.1
Q ss_pred CeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEe--eCCcEEEEEeCCCcEEEEECC-----
Q 004924 572 IVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS--CDGKCIYVSCKSGHVKVFDTS----- 643 (723)
Q Consensus 572 ~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~s--pdg~~l~sgs~dg~I~iwd~~----- 643 (723)
.+.-+.-|.-++.-++. ...++.|||.+.+.....-.- .....|.++.|. |+|+.+++.|..+.|.+|.-.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 34445555555555554 556899999998876544332 237889999996 799999999999999998532
Q ss_pred ----CCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecC
Q 004924 644 ----TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 644 ----~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~ 696 (723)
+...+..+... .+..++|. +..|.+ +|.+++.+ ++.+.|++-.
T Consensus 110 ~~~p~w~~i~~i~i~-----~~T~h~Ig--ds~Wl~-~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 110 NKGPSWAPIRKIDIS-----SHTPHPIG--DSIWLK-DGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred cCCcccceeEEEEee-----cCCCCCcc--ceeEec-CCeEEEEe--CCEEEEECCC
Confidence 12233333322 23345555 899999 77555443 4568888753
No 415
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.51 E-value=0.93 Score=52.49 Aligned_cols=91 Identities=11% Similarity=0.181 Sum_probs=57.7
Q ss_pred CCCeEEEEEeeCCcEEEEEeCCCcEEEEECCC----------CcE--EEE-eecccccCCCCccCccceEEEEEecC--C
Q 004924 613 DLPITYATYSCDGKCIYVSCKSGHVKVFDTST----------LEL--RCQ-INLTAYAQPGTISLELYPLVIAAHPL--E 677 (723)
Q Consensus 613 ~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~----------~~~--~~~-~~~~~~~~~g~~~~~v~~~~v~~sp~--d 677 (723)
...|..+.++|+|.+|+..|..|.. |..+.. |+. .++ +........ ......+..+.|||. +
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~--~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFT--SNSSLEIKQVRWHPWSES 160 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhcc--CCCCceEEEEEEcCCCCC
Confidence 4568899999999999988876644 433321 111 111 111111111 122345669999994 2
Q ss_pred CCEEEEEECCCcEEEEecCCCceeeecCC
Q 004924 678 PNRIALGLTNGRVHVIEPLESEVEWGKLP 706 (723)
Q Consensus 678 ~~~las~s~Dg~v~iWd~~~~~~~w~~~~ 706 (723)
+..|+.-+.|+++|+||+......|...+
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence 47899999999999999987765555533
No 416
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.31 E-value=9.2 Score=41.23 Aligned_cols=83 Identities=10% Similarity=0.068 Sum_probs=53.1
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEcc-----------------C
Q 004924 519 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-----------------D 581 (723)
Q Consensus 519 ~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~sp-----------------d 581 (723)
...+.++..+|++++.++...-|.|.++|+.++..+ + +.+|... ..+..+.... .
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vv-----r-mWKGYRd--Aqc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVV-----R-MWKGYRD--AQCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhh-----h-hhccCcc--ceEEEEEeecccccccccccccCCCCcc
Confidence 345778999999999998888899999999986332 2 2222110 1111111110 0
Q ss_pred CCEEEE-E-cCCcEEEEECCCCceeEEecC
Q 004924 582 QIHLLS-I-HEGQIDVYEAPTLNHTSQLVP 609 (723)
Q Consensus 582 g~~l~~-s-~dg~I~vwd~~~~~~~~~~~~ 609 (723)
..+|+. . ..|.|.||++++|..+..+..
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 134444 3 789999999999988877754
No 417
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.23 E-value=2.5 Score=46.25 Aligned_cols=156 Identities=14% Similarity=0.141 Sum_probs=87.6
Q ss_pred CCeEEEEEcCCC-eEEEEE--CCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCC----CEEEEEeCCCcEEEEeCCCC
Q 004924 479 PIATYFILLPQD-LFAFGF--DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL----NVLVSSGADAQLCVWDAVGW 551 (723)
Q Consensus 479 ~~v~~l~~~p~~-~l~sgs--~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg----~~l~s~s~dg~I~vwd~~~~ 551 (723)
.++..++|..-. .+++.- .+|.+++=| .+.+..|+ .|..+.|.|-+ ..++.......|.||.+...
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 356678885332 444432 344444333 23344443 58899999843 34666667889999998632
Q ss_pred ceeeceeeeeeecCCC--CCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCC--ceeEEecCCCCCCCeEEEEEeeCCc
Q 004924 552 KKLCSKFLHSFQTGLV--PETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCDGK 626 (723)
Q Consensus 552 ~~~~~~~l~~~~~~~~--~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~--~~~~~~~~~~h~~~v~~l~~spdg~ 626 (723)
.....+.+.. ...+. +..--.....|+|....|++ .....-.+++++.. +....+. ..+.|.+.||.+||+
T Consensus 93 ~~e~~K~l~s-QtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~---~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 93 TTERNKLLMS-QTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK---TSGLIHCACWTKDGQ 168 (671)
T ss_pred ccccccceee-eeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc---CCceEEEEEecCcCC
Confidence 1111121110 00000 00012246789999988887 44433345565533 3333343 278899999999998
Q ss_pred EEEEEe-CCCcEEEEECCCC
Q 004924 627 CIYVSC-KSGHVKVFDTSTL 645 (723)
Q Consensus 627 ~l~sgs-~dg~I~iwd~~~~ 645 (723)
.|+++- ..=.-++||-...
T Consensus 169 RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEEEEeCCeEEEEEecCchh
Confidence 777553 3345688986654
No 418
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.97 E-value=7.7 Score=39.05 Aligned_cols=146 Identities=13% Similarity=0.080 Sum_probs=86.4
Q ss_pred CeEEEEEcCCC-eEEEEE---CCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEe-CCCCcee
Q 004924 480 IATYFILLPQD-LFAFGF---DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD-AVGWKKL 554 (723)
Q Consensus 480 ~v~~l~~~p~~-~l~sgs---~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd-~~~~~~~ 554 (723)
.+.+.++++++ .++... ....++++.... .....+.+ ..+....|++++...+....+...+++. ..++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~-~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~- 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG-PVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG- 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC-cceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc-
Confidence 67889999999 665544 333555555332 22222232 3677889999987777766666667663 233221
Q ss_pred eceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E---cCCcEEEEECC---CCcee-----EEecCCCCCCCeEEEEEe
Q 004924 555 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAP---TLNHT-----SQLVPDKMDLPITYATYS 622 (723)
Q Consensus 555 ~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s---~dg~I~vwd~~---~~~~~-----~~~~~~~h~~~v~~l~~s 622 (723)
.... +...... ..|..+.+||||..++. . .++.|.+--+. .+... ..... .....+..+.|.
T Consensus 101 --~~~~-v~~~~~~--~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~-~~~~~v~~v~W~ 174 (253)
T PF10647_consen 101 --EPVE-VDWPGLR--GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP-PLLSDVTDVAWS 174 (253)
T ss_pred --eeEE-ecccccC--CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc-cccCcceeeeec
Confidence 1111 1111110 27999999999998886 3 35677776543 22110 01111 125678999999
Q ss_pred eCCcEEEEEeCCC
Q 004924 623 CDGKCIYVSCKSG 635 (723)
Q Consensus 623 pdg~~l~sgs~dg 635 (723)
+++.+++.+...+
T Consensus 175 ~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 175 DDSTLVVLGRSAG 187 (253)
T ss_pred CCCEEEEEeCCCC
Confidence 9999887766544
No 419
>PHA03098 kelch-like protein; Provisional
Probab=93.88 E-value=2.8 Score=47.51 Aligned_cols=184 Identities=10% Similarity=0.015 Sum_probs=86.2
Q ss_pred CCEEEEEe-CC------cEEEEEcCCCcEEEEEeC--CCCCeEEEEEcCCC-eEEEEECC-----CcEEEEeCCCCcEEE
Q 004924 449 GSHLFSAS-GG------KISIFSLETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKA 513 (723)
Q Consensus 449 ~~~l~s~s-dg------~I~vwd~~~~~~~~~~~~--~~~~v~~l~~~p~~-~l~sgs~d-----g~I~iwd~~~~~~~~ 513 (723)
+..++.|+ ++ .+..||..+++....-.. .......+ .-++ .++.|+.+ ..+..||..+++-..
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 55556665 32 577888877655322111 11112222 2256 66777755 257788887654322
Q ss_pred EEcC-cCCcEEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEE
Q 004924 514 KLKG-HQNRITCLAYSLSLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 586 (723)
Q Consensus 514 ~l~~-~~~~i~~l~~spdg~~l~s~s~d------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~ 586 (723)
.-.. +...-.++ ..-+++..+.|+.+ ..+..||..+++- ..+..++.... . .+++. -+++..+
T Consensus 373 ~~~lp~~r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W---~~~~~~p~~r~----~-~~~~~-~~~~iyv 442 (534)
T PHA03098 373 EPPLIFPRYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKW---SKGSPLPISHY----G-GCAIY-HDGKIYV 442 (534)
T ss_pred CCCcCcCCccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCee---eecCCCCcccc----C-ceEEE-ECCEEEE
Confidence 1110 11111111 22356666777632 3578889876432 22221222221 1 12222 2344444
Q ss_pred E-EcC--------CcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC-----CcEEEEECCCCc
Q 004924 587 S-IHE--------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLE 646 (723)
Q Consensus 587 ~-s~d--------g~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d-----g~I~iwd~~~~~ 646 (723)
. |.+ ..+.+||..+++.... ........-.++ ...+++.++.|+.+ +.+.+||..+.+
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~-~~~~~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNKWTEL-SSLNFPRINASL-CIFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCceeeC-CCCCcccccceE-EEECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 4 321 1388899887654322 111111111112 22367777777654 467778877654
No 420
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.53 E-value=5.1 Score=43.23 Aligned_cols=148 Identities=10% Similarity=0.142 Sum_probs=90.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEcc-----CCCEEEEEcCCcEEEEECCC--Cc-
Q 004924 531 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-----DQIHLLSIHEGQIDVYEAPT--LN- 602 (723)
Q Consensus 531 g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~sp-----dg~~l~~s~dg~I~vwd~~~--~~- 602 (723)
...+++|+..|.++||+...+.......+-..... .+|..+...+ +...||+=.-..+.||.+.. |.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~-----~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLK-----DPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTV 111 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecC-----CcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCc
Confidence 36899999999999999966432222121111111 5777776542 23455555777888887631 11
Q ss_pred ----e--eEEecCCCCCCCeEEEEEeeC-----CcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEE
Q 004924 603 ----H--TSQLVPDKMDLPITYATYSCD-----GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 671 (723)
Q Consensus 603 ----~--~~~~~~~~h~~~v~~l~~spd-----g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v 671 (723)
. +.....+.-.....++++.|- -.++.+-+.||.+.+|+-+.......+.. +.. +..+
T Consensus 112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~--~ll---------PgPl 180 (418)
T PF14727_consen 112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD--FLL---------PGPL 180 (418)
T ss_pred ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC--CCC---------CcCe
Confidence 1 111111111334455555552 35788999999999999887654444432 322 2257
Q ss_pred EEecCCCCEEEEEECCCcEEEEec
Q 004924 672 AAHPLEPNRIALGLTNGRVHVIEP 695 (723)
Q Consensus 672 ~~sp~d~~~las~s~Dg~v~iWd~ 695 (723)
+|.| ..+.+++++.+..+.-|+.
T Consensus 181 ~Y~~-~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 181 CYCP-RTDSFVTASSSWTLECYKY 203 (418)
T ss_pred EEee-cCCEEEEecCceeEEEecH
Confidence 7888 6678889988888888876
No 421
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.47 E-value=5.1 Score=45.24 Aligned_cols=171 Identities=11% Similarity=0.078 Sum_probs=87.3
Q ss_pred CeEEEEEe-CCEEEEEe-CCcEEEEEcCCCcEEEEE----eCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEE
Q 004924 441 SISCFALR-GSHLFSAS-GGKISIFSLETFQTLATF----ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA 513 (723)
Q Consensus 441 ~V~~v~~s-~~~l~s~s-dg~I~vwd~~~~~~~~~~----~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~ 513 (723)
.+..+.|+ ...|++.. +|++.||++. |+.+... ......|..+.+..+| .+.+. +|.+.+-+-.....++
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~--~g~v~~i~~~~~~~~~ 161 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVAVLTV--SGQVILINGVEEPKLR 161 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceEEEec--CCcEEEEcCCCcchhh
Confidence 77889999 77777777 9999999985 3333321 2223345555555577 44443 4455444322221222
Q ss_pred EEcC---cCCcEEEEEEcCCCCE-EEEEeCCCc--EEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE
Q 004924 514 KLKG---HQNRITCLAYSLSLNV-LVSSGADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 587 (723)
Q Consensus 514 ~l~~---~~~~i~~l~~spdg~~-l~s~s~dg~--I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~ 587 (723)
.+.. ...+-+|-...+++.. .....-+-. ..++....+ . .....+...+ ..+..+.+||+.++|+-
T Consensus 162 ~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~---~-~q~~~~~~~~----~~~~ki~VS~n~~~laL 233 (829)
T KOG2280|consen 162 KMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEES---R-VQLHALSWPN----SSVVKISVSPNRRFLAL 233 (829)
T ss_pred hCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecc---c-ccccccCCCC----ceEEEEEEcCCcceEEE
Confidence 2222 1111122222222211 110111100 011111111 0 1111122233 56888999999999998
Q ss_pred -EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEee
Q 004924 588 -IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 623 (723)
Q Consensus 588 -s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~sp 623 (723)
...|.|.+-+....++...+....|. +.-.++|..
T Consensus 234 yt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcg 269 (829)
T KOG2280|consen 234 YTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCG 269 (829)
T ss_pred EecCCcEEEEecchhhhhhccCCCCCC-chHhceeec
Confidence 78999999998877776666543322 222556643
No 422
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.37 E-value=2.9 Score=44.80 Aligned_cols=149 Identities=9% Similarity=0.053 Sum_probs=77.8
Q ss_pred CcEEEEEEcCCCCEEEEEe-----------CCC-cEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE
Q 004924 520 NRITCLAYSLSLNVLVSSG-----------ADA-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 587 (723)
Q Consensus 520 ~~i~~l~~spdg~~l~s~s-----------~dg-~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~ 587 (723)
.....++|.++|+.+++-. ..+ .|.+++-.++.-... ....+..+. .....+++.++| .+++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d-~~~vfa~~l----~~p~Gi~~~~~G-lyV~ 87 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD-KSNVFAEEL----SMVTGLAVAVGG-VYVA 87 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc-eeEEeecCC----CCccceeEecCC-EEEe
Confidence 3456788999998776643 223 676665543221111 111122221 356789999998 4444
Q ss_pred EcCCcEEEE-ECCCC-----c--eeE-EecCCC--CCCCeEEEEEeeCCcEEEEEeCC-------------------CcE
Q 004924 588 IHEGQIDVY-EAPTL-----N--HTS-QLVPDK--MDLPITYATYSCDGKCIYVSCKS-------------------GHV 637 (723)
Q Consensus 588 s~dg~I~vw-d~~~~-----~--~~~-~~~~~~--h~~~v~~l~~spdg~~l~sgs~d-------------------g~I 637 (723)
+ ...|..| |.... + .+. .+.... +......++|.|||.+.++-+.. |.|
T Consensus 88 ~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 88 T-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred C-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceE
Confidence 3 4445544 44311 1 111 121110 13447789999999866654421 345
Q ss_pred EEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECC
Q 004924 638 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 687 (723)
Q Consensus 638 ~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D 687 (723)
.-++..+++.. .+. .| -.+...++|+| +++++++-..+
T Consensus 167 ~r~~pdg~~~e-~~a------~G----~rnp~Gl~~d~-~G~l~~tdn~~ 204 (367)
T TIGR02604 167 FRYNPDGGKLR-VVA------HG----FQNPYGHSVDS-WGDVFFCDNDD 204 (367)
T ss_pred EEEecCCCeEE-EEe------cC----cCCCccceECC-CCCEEEEccCC
Confidence 55555554432 221 12 12244899999 88887765433
No 423
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.37 E-value=0.16 Score=51.78 Aligned_cols=86 Identities=12% Similarity=0.144 Sum_probs=64.4
Q ss_pred cchHHHHHHHHHHhhhhhhHHHHHHHhhhcccc--------ccchhhHHhhhcCChHHHHHHHhhccccccCcchhHHHH
Q 004924 126 ETKEELIYLIHQFLNEEEFKETLHKLEQETRVF--------FDINYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFS 197 (723)
Q Consensus 126 ~~~~evirlI~q~L~e~G~~~s~~~L~~Es~i~--------~~~~~l~~~i~~G~w~~~~~~l~~l~~~~~~~~~~~~~~ 197 (723)
-.|.-+.|+|..|+-.+||-.+|..|-++|.+. .++...+++|+.|+...|+.-...-...-...-+.-.|-
T Consensus 113 w~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~ 192 (389)
T KOG0396|consen 113 WPRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESSLEFQ 192 (389)
T ss_pred hHHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccchhhhH
Confidence 356779999999999999999999999999876 347788889999998888876642200000011222344
Q ss_pred HHHHHHHHHHHhhcC
Q 004924 198 QIQRQKYLEAVDRQQ 212 (723)
Q Consensus 198 ~l~~q~~le~l~~~e 212 (723)
+..|.|+|++..++
T Consensus 193 -lRlQefIELi~~~~ 206 (389)
T KOG0396|consen 193 -LRLQEFIELIKVDN 206 (389)
T ss_pred -HHHHHHHHHHHhcc
Confidence 89999999999884
No 424
>PRK13684 Ycf48-like protein; Provisional
Probab=93.28 E-value=13 Score=39.30 Aligned_cols=154 Identities=6% Similarity=-0.063 Sum_probs=87.0
Q ss_pred CCCeEEEEEcCCC-eEEEEECCCcEEE-EeCCCCcEEEEE-cCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 004924 478 PPIATYFILLPQD-LFAFGFDDSSILV-HCPCTKKTKAKL-KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 554 (723)
Q Consensus 478 ~~~v~~l~~~p~~-~l~sgs~dg~I~i-wd~~~~~~~~~l-~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~ 554 (723)
...+.++.+.|++ .++++. .|.+.. ++ ..++.-... ..-...++++.+.++++.++++ ..|.+++=..+.|..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s- 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES- 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc-
Confidence 4567889999988 655554 555443 22 223322222 2345678899999998876654 567665323344321
Q ss_pred eceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecC-CCCCCCeEEEEEeeCCcEEEEEeC
Q 004924 555 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCK 633 (723)
Q Consensus 555 ~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~-~~h~~~v~~l~~spdg~~l~sgs~ 633 (723)
...+. .+.... ...+.++.+.|++..++++.+|.+. .....++.-..... ..-......+.|..+++.++ .+.
T Consensus 248 -W~~~~-~~~~~~--~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~ 321 (334)
T PRK13684 248 -WSKPI-IPEITN--GYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQ 321 (334)
T ss_pred -ccccc-CCcccc--ccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECC
Confidence 11111 110100 0357889999998888888888665 34444554333321 11123577788776666555 445
Q ss_pred CCcEEEEE
Q 004924 634 SGHVKVFD 641 (723)
Q Consensus 634 dg~I~iwd 641 (723)
.|.|--|+
T Consensus 322 ~G~il~~~ 329 (334)
T PRK13684 322 RGVLLRYV 329 (334)
T ss_pred CceEEEec
Confidence 78776664
No 425
>PRK13684 Ycf48-like protein; Provisional
Probab=93.21 E-value=13 Score=39.23 Aligned_cols=157 Identities=12% Similarity=0.043 Sum_probs=85.9
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEE-EeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEE
Q 004924 519 QNRITCLAYSLSLNVLVSSGADAQLCV-WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYE 597 (723)
Q Consensus 519 ~~~i~~l~~spdg~~l~s~s~dg~I~v-wd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd 597 (723)
.+.+.++.+.|++.+++++ ..|.+.. +|- .++ ....+ ..... ..+.++.+.++++.++++..|.+++=.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~-gg~--tW~~~---~~~~~---~~l~~i~~~~~g~~~~vg~~G~~~~~s 241 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEP-GQT--AWTPH---QRNSS---RRLQSMGFQPDGNLWMLARGGQIRFND 241 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCC-CCC--eEEEe---eCCCc---ccceeeeEcCCCCEEEEecCCEEEEcc
Confidence 4678899999988666554 4565542 221 111 01111 12222 578999999999988888778765433
Q ss_pred CCCCceeEEecCC--CCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEec
Q 004924 598 APTLNHTSQLVPD--KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 675 (723)
Q Consensus 598 ~~~~~~~~~~~~~--~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp 675 (723)
...|..-.....+ .....+.++.+.|++..+++| .+|.+. .....|+--....... + -... ...+.|..
T Consensus 242 ~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~----~-~~~~--~~~~~~~~ 312 (334)
T PRK13684 242 PDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGE----E-VPSN--FYKIVFLD 312 (334)
T ss_pred CCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCC----C-CCcc--eEEEEEeC
Confidence 4444432222111 013457889999988765544 567664 3444444322221100 0 0112 33677765
Q ss_pred CCCCEEEEEECCCcEEEEecC
Q 004924 676 LEPNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 676 ~d~~~las~s~Dg~v~iWd~~ 696 (723)
++.. ..++..|.|--|+-.
T Consensus 313 -~~~~-~~~G~~G~il~~~~~ 331 (334)
T PRK13684 313 -PEKG-FVLGQRGVLLRYVGS 331 (334)
T ss_pred -CCce-EEECCCceEEEecCC
Confidence 4444 445678888877653
No 426
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.21 E-value=8.7 Score=37.25 Aligned_cols=233 Identities=16% Similarity=0.152 Sum_probs=119.7
Q ss_pred CCcEEEEEcCCCcEEE-EEeCCCCCeEEEEEc-CCC--eEEEEE-CCCcEEEEeCCC--CcEEEEE---cC--cCCcEEE
Q 004924 457 GGKISIFSLETFQTLA-TFANPPPIATYFILL-PQD--LFAFGF-DDSSILVHCPCT--KKTKAKL---KG--HQNRITC 524 (723)
Q Consensus 457 dg~I~vwd~~~~~~~~-~~~~~~~~v~~l~~~-p~~--~l~sgs-~dg~I~iwd~~~--~~~~~~l---~~--~~~~i~~ 524 (723)
.|.|.-||..+.+..+ ++.+.. +.++.+- .++ .++++. ..-.|.-||... ....+++ .. .....++
T Consensus 36 ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~ND 113 (310)
T KOG4499|consen 36 AGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLND 113 (310)
T ss_pred cCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHHhccccc
Confidence 5777779987765433 233322 2233332 222 333333 222344566322 2222221 11 2456677
Q ss_pred EEEcCCCCEEEEEeCC---------CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE--EcCCcE
Q 004924 525 LAYSLSLNVLVSSGAD---------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQI 593 (723)
Q Consensus 525 l~~spdg~~l~s~s~d---------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~--s~dg~I 593 (723)
-..+|+|++.+-.-.| |.++.|-.... +..+...- .--+.++|+.+.+.+.. +.+-+|
T Consensus 114 gkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~-------v~~i~~~v----~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 114 GKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ-------VELIWNCV----GISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred CccCCCCceeeeeeccccccccccccEEEEeccCCC-------ceeeehhc----cCCccccccccCcEEEEEccCceEE
Confidence 7889999984322222 33444433221 11011111 23356889988887776 566778
Q ss_pred EEEE--CCCCce-----eEEecCCC--CCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccC
Q 004924 594 DVYE--APTLNH-----TSQLVPDK--MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISL 664 (723)
Q Consensus 594 ~vwd--~~~~~~-----~~~~~~~~--h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~ 664 (723)
.-|| ..+|.. +..++... .....-.++...+|.+.++.-+.|+|.-.|..+|+++..+..+.
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt--------- 253 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPT--------- 253 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCC---------
Confidence 7777 545432 22222100 01122345666788888888888999999999999999987542
Q ss_pred ccceEEEEEecCCCCEEE-EEECC--CcEEEEecCCCceeeecCCCCcccc
Q 004924 665 ELYPLVIAAHPLEPNRIA-LGLTN--GRVHVIEPLESEVEWGKLPFTDSRE 712 (723)
Q Consensus 665 ~v~~~~v~~sp~d~~~la-s~s~D--g~v~iWd~~~~~~~w~~~~~~~~g~ 712 (723)
-.+++++|--.+-..+. |+..+ .-++.-.-.++.+.++++.-...|.
T Consensus 254 -~qitsccFgGkn~d~~yvT~aa~~~dp~~~~~~p~aG~iykitgl~~~g~ 303 (310)
T KOG4499|consen 254 -PQITSCCFGGKNLDILYVTTAAKFDDPVRTNTDPNAGTIYKITGLNAKGY 303 (310)
T ss_pred -CceEEEEecCCCccEEEEEehhcccCchhcccCCCCccEEEecCcccCCC
Confidence 12558898652333443 33322 1222222222344566655444443
No 427
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.12 E-value=1.5 Score=46.28 Aligned_cols=154 Identities=9% Similarity=0.092 Sum_probs=93.5
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccc
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 412 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~ 412 (723)
|+.|.+....+...|.+.=|.+.+.+ +.....+... ..++|.++.||+|.+.||.--.|.+|.+.+....+.
T Consensus 29 FfDDaNkqlfavrSggatgvvvkgpn-dDVpiSfdm~---d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~---- 100 (657)
T KOG2377|consen 29 FFDDANKQLFAVRSGGATGVVVKGPN-DDVPISFDMD---DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNS---- 100 (657)
T ss_pred eeccCcceEEEEecCCeeEEEEeCCC-CCCCceeeec---CCCceeEEEeccCcceEEEEecCceEEEEecCCCch----
Confidence 34444445555556667777776532 1222222222 467999999999999999999999999988743211
Q ss_pred cceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEeCCcEEEEEcCCC-cEEEEEeCCCCCeEEEEEcCCC
Q 004924 413 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETF-QTLATFANPPPIATYFILLPQD 490 (723)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~sdg~I~vwd~~~~-~~~~~~~~~~~~v~~l~~~p~~ 490 (723)
...-.......+..|....|+ ..-+|...+..+-+|.+... ..++..+.+.-.|.-..|+++.
T Consensus 101 ---------------~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et 165 (657)
T KOG2377|consen 101 ---------------QLEYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPET 165 (657)
T ss_pred ---------------hhHHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEcccc
Confidence 000000000234558888998 77777777777777766543 3345556777788888888887
Q ss_pred ---eEEEEECCCcEEEEeCCCC
Q 004924 491 ---LFAFGFDDSSILVHCPCTK 509 (723)
Q Consensus 491 ---~l~sgs~dg~I~iwd~~~~ 509 (723)
.++++-..+++.=+.++++
T Consensus 166 ~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 166 AVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred ceEeeeccccccccccEEEeec
Confidence 3344434444444444443
No 428
>PRK10115 protease 2; Provisional
Probab=92.66 E-value=25 Score=41.11 Aligned_cols=192 Identities=11% Similarity=0.041 Sum_probs=95.7
Q ss_pred CeEEEEEe--CCEEEEEe--CC----cEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEEC-C-----CcEEEEe
Q 004924 441 SISCFALR--GSHLFSAS--GG----KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-D-----SSILVHC 505 (723)
Q Consensus 441 ~V~~v~~s--~~~l~s~s--dg----~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~-d-----g~I~iwd 505 (723)
.+..+.|+ +++|+.+. +| .|++.|+.+|..+....... -..++|.+|+ .|+.... + ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 35566777 67777665 23 58899998886432221111 1468999998 5544432 2 3688888
Q ss_pred CCCC--cEEEEEcCcCCcEE-EEEEcCCCCEEEEEeC---CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEc
Q 004924 506 PCTK--KTKAKLKGHQNRIT-CLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 579 (723)
Q Consensus 506 ~~~~--~~~~~l~~~~~~i~-~l~~spdg~~l~s~s~---dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~s 579 (723)
+.++ +....+........ .+..+.++++++..+. ++.+.+++....... ...+. .... .....+. +
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~----~~~~~~~-~ 277 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAE-PFVFL--PRRK----DHEYSLD-H 277 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCC-ceEEE--ECCC----CCEEEEE-e
Confidence 8887 44444543333333 3333448877665443 356888885321100 01111 1111 2222222 3
Q ss_pred cCCCEEEEEc-C---CcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECC
Q 004924 580 PDQIHLLSIH-E---GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 580 pdg~~l~~s~-d---g~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~ 643 (723)
..+.+.+.+. + ..|...++........+........+..+.++ .+.++++...+|.-+++-+.
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 3333333332 1 23444455421112233332123467777776 33555566667765554443
No 429
>PHA03098 kelch-like protein; Provisional
Probab=92.40 E-value=6.2 Score=44.69 Aligned_cols=101 Identities=14% Similarity=0.072 Sum_probs=50.1
Q ss_pred CCEEEEEe-C------CcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCC--------cEEEEeCCCCcEE
Q 004924 449 GSHLFSAS-G------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS--------SILVHCPCTKKTK 512 (723)
Q Consensus 449 ~~~l~s~s-d------g~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg--------~I~iwd~~~~~~~ 512 (723)
+...+.|| + ..+..||+.+++....-..........+...++ .++.|+.++ .+.+||..+++-.
T Consensus 390 ~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 390 NLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred CEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence 66666665 2 357889987765433211111111111222345 556665432 3888998876543
Q ss_pred EE--EcCcCCcEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCC
Q 004924 513 AK--LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGW 551 (723)
Q Consensus 513 ~~--l~~~~~~i~~l~~spdg~~l~s~s~d-----g~I~vwd~~~~ 551 (723)
.. +.........+.+ +++.++.|+.+ ..+.+||..+.
T Consensus 470 ~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 470 ELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred eCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 21 1111111112222 56677777654 46778887763
No 430
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=92.16 E-value=5.7 Score=44.15 Aligned_cols=129 Identities=12% Similarity=-0.024 Sum_probs=73.5
Q ss_pred EEEccCCCEEEEEcCCcEEEEECCCCceeEEecCCCCC-CCeEEEEEeeCCcEEEEEeC-------------CCcEEEEE
Q 004924 576 IQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMD-LPITYATYSCDGKCIYVSCK-------------SGHVKVFD 641 (723)
Q Consensus 576 l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~-~~v~~l~~spdg~~l~sgs~-------------dg~I~iwd 641 (723)
+...++|.+++... ..++.+|+ .|+.+..+...... ..=..+..-|+|++|+.+.. .-.|..+|
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred eeEcCCCCEEEecC-CceEEEcC-CCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence 66778888877644 88888888 57766665543210 11235777899999987772 23477778
Q ss_pred CCCCcEEEEeecccccC-----------------CCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCceeeec
Q 004924 642 TSTLELRCQINLTAYAQ-----------------PGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK 704 (723)
Q Consensus 642 ~~~~~~~~~~~~~~~~~-----------------~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~w~~ 704 (723)
.+|+.+..+....... .+...+...+.++.+.+.++.+++|+-.-..|...|..+++-+|..
T Consensus 231 -~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 231 -PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred -CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence 8899888876543320 0112334557799999966666666656668999999999999988
Q ss_pred CCC
Q 004924 705 LPF 707 (723)
Q Consensus 705 ~~~ 707 (723)
.++
T Consensus 310 g~~ 312 (477)
T PF05935_consen 310 GPP 312 (477)
T ss_dssp S-S
T ss_pred CCC
Confidence 654
No 431
>PF06588 Muskelin_N: Muskelin N-terminus; InterPro: IPR010565 This entry represents the N-terminal region of muskelin and is found in conjunction with several IPR006652 from INTERPRO repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1 [].
Probab=92.06 E-value=0.09 Score=49.00 Aligned_cols=47 Identities=19% Similarity=0.330 Sum_probs=40.0
Q ss_pred HHHHHhcCCCcccchHHHHHHHHHHhhhhhhHHHHHHHhhhcccccc
Q 004924 114 SLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD 160 (723)
Q Consensus 114 ~~~~~~~~~~~~~~~~evirlI~q~L~e~G~~~s~~~L~~Es~i~~~ 160 (723)
++++..+..++...-.|++||++.+|+..||..++.+||+.+++.++
T Consensus 151 ~~v~~~~~~~~~~re~eaiRlcLKHlRq~~y~~aFesLqk~t~v~LE 197 (199)
T PF06588_consen 151 DIVQPCLQWYNKYREKEAIRLCLKHLRQRGYLEAFESLQKQTGVQLE 197 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHcCCCCC
Confidence 44555455677778889999999999999999999999999999875
No 432
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.04 E-value=8.8 Score=36.54 Aligned_cols=180 Identities=13% Similarity=0.075 Sum_probs=95.5
Q ss_pred EEEEe-CCEEEEEe---CCcEEEEEcCCCcEEEEEeCCCCCeE--EEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEcC
Q 004924 444 CFALR-GSHLFSAS---GGKISIFSLETFQTLATFANPPPIAT--YFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG 517 (723)
Q Consensus 444 ~v~~s-~~~l~s~s---dg~I~vwd~~~~~~~~~~~~~~~~v~--~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~ 517 (723)
.+.+. |.++.+.+ ...|++||+.+|+.+..-.-....+- .+.-..|....-.-.+|.-..+|.++-+++..+.
T Consensus 50 GL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~- 128 (262)
T COG3823 50 GLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS- 128 (262)
T ss_pred ceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-
Confidence 34555 65666666 35799999999988766542211111 1111112222334568888899988877776554
Q ss_pred cCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEE
Q 004924 518 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVY 596 (723)
Q Consensus 518 ~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vw 596 (723)
..+.=..+ ..|+..|+.++...+++.-|.++...... ++....+.. ...++.+.|- +|...|-- .+..|...
T Consensus 129 y~GeGWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~--v~VT~~g~p--v~~LNELE~V-dG~lyANVw~t~~I~rI 201 (262)
T COG3823 129 YEGEGWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDT--VQVTDDGVP--VSKLNELEWV-DGELYANVWQTTRIARI 201 (262)
T ss_pred cCCcceee--ecCCcceEeeCCceEEEecCHHHhhhcce--EEEEECCee--cccccceeee-ccEEEEeeeeecceEEE
Confidence 22222333 33566677776666777777766432221 121122210 0223334443 34333322 45566666
Q ss_pred ECCCCceeEEecCC----------CCCCCeEEEEEeeCC-cEEEEE
Q 004924 597 EAPTLNHTSQLVPD----------KMDLPITYATYSCDG-KCIYVS 631 (723)
Q Consensus 597 d~~~~~~~~~~~~~----------~h~~~v~~l~~spdg-~~l~sg 631 (723)
|..+|+.+..+... .+..-.+.+++.|++ +++++|
T Consensus 202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 77777766554321 134456778888877 455555
No 433
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=91.99 E-value=6.2 Score=44.23 Aligned_cols=163 Identities=15% Similarity=0.171 Sum_probs=81.2
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcc----
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ---- 408 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~---- 408 (723)
..|.|+.++.++.||.+++|+.-.......|. ...+-..+.|...| |+++.+|..+.-|.-..-..
T Consensus 22 shp~~~s~v~~~~d~si~lfn~~~r~qski~~--------~~~p~~nlv~tnhg--l~~~tsdrr~la~~~dgvvqqqfd 91 (1636)
T KOG3616|consen 22 SHPGGQSFVLAHQDGSIILFNFIPRRQSKICE--------EAKPKENLVFTNHG--LVTATSDRRALAWKEDGVVQQQFD 91 (1636)
T ss_pred ecCCCceEEEEecCCcEEEEeecccchhhhhh--------hcCCccceeeeccc--eEEEeccchhheeeccCcchhhcc
Confidence 45899999999999999999986311011111 12233456676666 56667777787786442111
Q ss_pred cccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-------CCEEEE-EeCCcEEEEEcCCCcEEEEEeCCCCC
Q 004924 409 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-------GSHLFS-ASGGKISIFSLETFQTLATFANPPPI 480 (723)
Q Consensus 409 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-------~~~l~s-~sdg~I~vwd~~~~~~~~~~~~~~~~ 480 (723)
-.......++..+.|+....++-++ -+.|..+..+ +++=.+ ..-..|.+-|+.++..........-.
T Consensus 92 yndqsekefss~~cdptaqnvvgtl-----cggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~trt~l~s~~g~a 166 (1636)
T KOG3616|consen 92 YNDQSEKEFSSILCDPTAQNVVGTL-----CGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSNDTRTNLISHKGLA 166 (1636)
T ss_pred ccchhhhhccceecCchhhhhhhhh-----ccceeeehHHHHhHHHhccceeEEeccceeeeecccCCceEeeeecCCcc
Confidence 0111122233344444433333221 1223332222 222111 12456666677665554433322223
Q ss_pred eEEEEEcCCCeEEEEECCCcEEEEeCCCCc
Q 004924 481 ATYFILLPQDLFAFGFDDSSILVHCPCTKK 510 (723)
Q Consensus 481 v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~ 510 (723)
|.-+..-...+.+.+....+|.+-|+.+.+
T Consensus 167 idelkilgkdryli~~ts~siii~d~es~r 196 (1636)
T KOG3616|consen 167 IDELKILGKDRYLIAHTSESIIIADLESNR 196 (1636)
T ss_pred hhhhhhccccceEEeeccccEEEeecccch
Confidence 333333322344556666678887877643
No 434
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.95 E-value=22 Score=40.47 Aligned_cols=33 Identities=9% Similarity=-0.036 Sum_probs=28.3
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 004924 519 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 551 (723)
Q Consensus 519 ~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~ 551 (723)
.+.+..+..||+.++|+.-..+|.|.+-+.+..
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence 356788999999999999999999998887764
No 435
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.88 E-value=6.5 Score=37.84 Aligned_cols=152 Identities=13% Similarity=0.130 Sum_probs=81.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE--E--cCC---cEEEE---ECC--
Q 004924 532 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I--HEG---QIDVY---EAP-- 599 (723)
Q Consensus 532 ~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~--s--~dg---~I~vw---d~~-- 599 (723)
..|..+.....|.+|++.+... ..+.++..- +.|..+.++..|.++++ . ... .+|+| ...
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~---~~~~~F~Tv-----~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEEC---PLLCTFSTV-----GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCC---ceeEEEcch-----hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 4555556678899999984322 223323332 68999999999999998 2 223 45554 322
Q ss_pred CCceeE-EecCC-------------------CCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcE-EEEeecccccC
Q 004924 600 TLNHTS-QLVPD-------------------KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL-RCQINLTAYAQ 658 (723)
Q Consensus 600 ~~~~~~-~~~~~-------------------~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~~~~~ 658 (723)
...++. .+.++ +-..++.+++..|-..-|+.|+ ++++.+|.+..+.. ...+....+..
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~ 179 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFER 179 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechh
Confidence 112221 11110 0133556666666444455554 57788998876544 21111111100
Q ss_pred CC-CccCccceEEEEEecCCCCEEEEEECCCcEEEEecC
Q 004924 659 PG-TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 659 ~g-~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~ 696 (723)
.. .+.....+..+++.. .|+|..++ -.++|..+.
T Consensus 180 ~l~~~~~~~~p~~v~ic~---~yiA~~s~-~ev~Vlkl~ 214 (215)
T PF14761_consen 180 SLIDHIDNFKPTQVAICE---GYIAVMSD-LEVLVLKLE 214 (215)
T ss_pred hhhheecCceEEEEEEEe---eEEEEecC-CEEEEEEEe
Confidence 00 012234455777754 68888864 467887764
No 436
>PHA02790 Kelch-like protein; Provisional
Probab=91.36 E-value=12 Score=41.80 Aligned_cols=97 Identities=11% Similarity=-0.008 Sum_probs=46.9
Q ss_pred CCEEEEEe-C---CcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEE--EcCcCCc
Q 004924 449 GSHLFSAS-G---GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK--LKGHQNR 521 (723)
Q Consensus 449 ~~~l~s~s-d---g~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~--l~~~~~~ 521 (723)
|...+.|| + ..+..||..+.+....-..........+..-++ ..+.| |.+.+||..+++-... +......
T Consensus 363 g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~ 439 (480)
T PHA02790 363 NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDN 439 (480)
T ss_pred CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccc
Confidence 66667766 4 347788887665433211111111111223355 55555 3577899877644321 1111111
Q ss_pred EEEEEEcCCCCEEEEEeCC-----CcEEEEeCCC
Q 004924 522 ITCLAYSLSLNVLVSSGAD-----AQLCVWDAVG 550 (723)
Q Consensus 522 i~~l~~spdg~~l~s~s~d-----g~I~vwd~~~ 550 (723)
. +++ .-+|+..++|+.+ ..+..||..+
T Consensus 440 ~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 440 P-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred c-EEE-EECCEEEEECCcCCCcccceEEEEECCC
Confidence 1 122 2256677777654 2456666655
No 437
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.15 E-value=18 Score=38.01 Aligned_cols=174 Identities=13% Similarity=0.077 Sum_probs=92.6
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCc------EEEEeCCC--Cceeeceeee--eeecCCC-C---CCCCeEEEEEccCCCEE
Q 004924 520 NRITCLAYSLSLNVLVSSGADAQ------LCVWDAVG--WKKLCSKFLH--SFQTGLV-P---ETTIVNHIQFHPDQIHL 585 (723)
Q Consensus 520 ~~i~~l~~spdg~~l~s~s~dg~------I~vwd~~~--~~~~~~~~l~--~~~~~~~-~---~~~~v~~l~~spdg~~l 585 (723)
+.++.+.+.+++..+++.+.+|. +..+++.. +......... .+..... + .....-++++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 56778888876667777777777 65555543 1000000000 0111110 0 00144578888888888
Q ss_pred EEE-cC------CcEEEEECCCCceeEEecCC-------------CCCCCeEEEEEeeCCcEEEEEeC-----CC--c--
Q 004924 586 LSI-HE------GQIDVYEAPTLNHTSQLVPD-------------KMDLPITYATYSCDGKCIYVSCK-----SG--H-- 636 (723)
Q Consensus 586 ~~s-~d------g~I~vwd~~~~~~~~~~~~~-------------~h~~~v~~l~~spdg~~l~sgs~-----dg--~-- 636 (723)
++. .+ ..|+.++.. |+....+..+ ..+..+-+++++|+|+.|+++.+ |+ .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 886 55 678888875 6665554211 12566889999999997766544 22 1
Q ss_pred -----EEEE--ECCC-CcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEE-----CCCcEEEEecC
Q 004924 637 -----VKVF--DTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL-----TNGRVHVIEPL 696 (723)
Q Consensus 637 -----I~iw--d~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s-----~Dg~v~iWd~~ 696 (723)
++++ |..+ ++....+......... ......+..+.+-+ ++++|+--= ....++|+.+.
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~-~~~~~~isd~~al~-d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPT-APGDNGISDIAALP-DGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCcccc-ccCCCCceeEEEEC-CCcEEEEEccCCCCccceEEEEEEE
Confidence 4454 4444 3333333221110000 00223355889988 777666322 24456666554
No 438
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.10 E-value=19 Score=36.56 Aligned_cols=205 Identities=12% Similarity=0.106 Sum_probs=115.5
Q ss_pred eEEEEEe-CCEE-EEEe-CCcEEEEEcC------CC-cEEEEEeC-----CCCCeEEEEEcCCC-------------eEE
Q 004924 442 ISCFALR-GSHL-FSAS-GGKISIFSLE------TF-QTLATFAN-----PPPIATYFILLPQD-------------LFA 493 (723)
Q Consensus 442 V~~v~~s-~~~l-~s~s-dg~I~vwd~~------~~-~~~~~~~~-----~~~~v~~l~~~p~~-------------~l~ 493 (723)
-+.++++ +..+ ++.. .+...+||.. .. ..+-++.. .....+.+.|+... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4678888 4444 4443 6889999986 12 22333332 12345667776432 467
Q ss_pred EEECCCcEEEEeCCCCcE-----EEEEc-CcCCcEE-EEEEcC--CCCEEEEEe-CCCcEEEEeCCCCceee--ceeeee
Q 004924 494 FGFDDSSILVHCPCTKKT-----KAKLK-GHQNRIT-CLAYSL--SLNVLVSSG-ADAQLCVWDAVGWKKLC--SKFLHS 561 (723)
Q Consensus 494 sgs~dg~I~iwd~~~~~~-----~~~l~-~~~~~i~-~l~~sp--dg~~l~s~s-~dg~I~vwd~~~~~~~~--~~~l~~ 561 (723)
.++.||+|.=|...-+.. ...+. +..+.|. .+++.. .+.+|..+. ..++|.|||-.-..... ...-..
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 888999999998543222 12222 1123333 344443 345555443 57889998865321100 000001
Q ss_pred eecCCCCCCCCeEEEEEccCCCEEEE-E-------------cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEee----
Q 004924 562 FQTGLVPETTIVNHIQFHPDQIHLLS-I-------------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC---- 623 (723)
Q Consensus 562 ~~~~~~~~~~~v~~l~~spdg~~l~~-s-------------~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~sp---- 623 (723)
++.+..+ -.|..+ .++..++ . .-|.|-+||+ .|+.++++...+.-...+.++..|
T Consensus 185 iPagyAP--FnIqni----g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 185 LPAGYAP--FNVQNL----GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CCCCCCC--cceEEE----CCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 2222211 112111 1222222 2 2357999999 688888886655566677777755
Q ss_pred --CCcEEEEEeCCCcEEEEECCCCcEEEEeec
Q 004924 624 --DGKCIYVSCKSGHVKVFDTSTLELRCQINL 653 (723)
Q Consensus 624 --dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 653 (723)
.|.+|+---.||+|..||..+|+.+..+..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 567788777799999999999988777753
No 439
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.03 E-value=8.4 Score=41.25 Aligned_cols=148 Identities=12% Similarity=0.034 Sum_probs=77.5
Q ss_pred CeEEEEEcCCC-eEEEEE-----------CCC-cEEEEeCCC--Cc--EEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCc
Q 004924 480 IATYFILLPQD-LFAFGF-----------DDS-SILVHCPCT--KK--TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ 542 (723)
Q Consensus 480 ~v~~l~~~p~~-~l~sgs-----------~dg-~I~iwd~~~--~~--~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~ 542 (723)
....++|.++| .+++-. ..+ .|.+++-.+ |+ ....+...-.....+++.++| +++++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence 34588999999 444432 223 677776443 32 223443333456788999988 444444443
Q ss_pred EEEEeCCCCc-ee-eceee-eeeecCCCCCCCCeEEEEEccCCCEEEE-EcC-------------------CcEEEEECC
Q 004924 543 LCVWDAVGWK-KL-CSKFL-HSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-------------------GQIDVYEAP 599 (723)
Q Consensus 543 I~vwd~~~~~-~~-~~~~l-~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~d-------------------g~I~vwd~~ 599 (723)
.++.|..... .. ....+ ..+.............++|.|||.+.++ +.. +.|..+|..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 3344554311 10 11112 1122210000045778999999977665 421 345555554
Q ss_pred CCceeEEecCCCCCCCeEEEEEeeCCcEEEEEe
Q 004924 600 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 632 (723)
Q Consensus 600 ~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs 632 (723)
+++. ..+.. + ......++|+|+|+++++-.
T Consensus 173 g~~~-e~~a~-G-~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 173 GGKL-RVVAH-G-FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCeE-EEEec-C-cCCCccceECCCCCEEEEcc
Confidence 4432 23321 2 34456899999998876644
No 440
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.03 E-value=12 Score=35.57 Aligned_cols=179 Identities=12% Similarity=0.037 Sum_probs=93.2
Q ss_pred eEEEEEC--CCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceeeceeeeeeecCCC
Q 004924 491 LFAFGFD--DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 567 (723)
Q Consensus 491 ~l~sgs~--dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l-~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~ 567 (723)
.+.+.+. ...|++||+++|+.+..-.-....+..=-...-|..+ ...-.+|.-..+|.++.+........
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~------- 130 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE------- 130 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC-------
Confidence 4444443 3379999999998775443211111100001112222 22335777788888874332222211
Q ss_pred CCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecCCCCCCCe---EEEEEeeCCcEEEEEeCCCcEEEEECC
Q 004924 568 PETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPI---TYATYSCDGKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 568 ~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v---~~l~~spdg~~l~sgs~dg~I~iwd~~ 643 (723)
+.-..++ .|++.+..+ ....++.-|.++.....++.......+| +.+.| -||...|-.-.+..|...|..
T Consensus 131 ---GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~ 204 (262)
T COG3823 131 ---GEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPD 204 (262)
T ss_pred ---Ccceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCC
Confidence 3333443 455555554 4456666666554433333221223333 33444 366666656666778888889
Q ss_pred CCcEEEEeecccccC----CCCccCccceEEEEEecCCCCEEEEE
Q 004924 644 TLELRCQINLTAYAQ----PGTISLELYPLVIAAHPLEPNRIALG 684 (723)
Q Consensus 644 ~~~~~~~~~~~~~~~----~g~~~~~v~~~~v~~sp~d~~~las~ 684 (723)
+|+.+..+....... .+.+.+..+ .+++.|+.++++++|
T Consensus 205 sGrV~~widlS~L~~~~~~~~~~~nvlN--GIA~~~~~~r~~iTG 247 (262)
T COG3823 205 SGRVVAWIDLSGLLKELNLDKSNDNVLN--GIAHDPQQDRFLITG 247 (262)
T ss_pred CCcEEEEEEccCCchhcCcccccccccc--ceeecCcCCeEEEec
Confidence 999888777543321 122333344 899999544666665
No 441
>PHA02790 Kelch-like protein; Provisional
Probab=90.94 E-value=10 Score=42.18 Aligned_cols=181 Identities=9% Similarity=-0.082 Sum_probs=81.6
Q ss_pred CCEEEEEe-C-----CcEEEEEcCCCcEEEEE--eCCCCCeEEEEEcCCC-eEEEEECC--CcEEEEeCCCCcEEEEEcC
Q 004924 449 GSHLFSAS-G-----GKISIFSLETFQTLATF--ANPPPIATYFILLPQD-LFAFGFDD--SSILVHCPCTKKTKAKLKG 517 (723)
Q Consensus 449 ~~~l~s~s-d-----g~I~vwd~~~~~~~~~~--~~~~~~v~~l~~~p~~-~l~sgs~d--g~I~iwd~~~~~~~~~l~~ 517 (723)
+..++.|+ + .++..||..+++....- ....... +++ .-++ ..+.|+.+ ..+..||..+++-.. +..
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~-~~~ 348 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVN-MPS 348 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEE-CCC
Confidence 44445555 3 24667888776543321 1111111 222 2356 66777754 367888876654322 111
Q ss_pred cCCcE-EEEEEcCCCCEEEEEeCCC---cEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcE
Q 004924 518 HQNRI-TCLAYSLSLNVLVSSGADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQI 593 (723)
Q Consensus 518 ~~~~i-~~l~~spdg~~l~s~s~dg---~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I 593 (723)
-..+. ......-+|+..+.|+.++ .+..||.++..- .....++... ... +++ .-+|+..+.| |.+
T Consensus 349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W---~~~~~m~~~r----~~~-~~~-~~~~~IYv~G--G~~ 417 (480)
T PHA02790 349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQW---QFGPSTYYPH----YKS-CAL-VFGRRLFLVG--RNA 417 (480)
T ss_pred CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEE---EeCCCCCCcc----ccc-eEE-EECCEEEEEC--Cce
Confidence 11111 1111223567777777553 466788876421 1111111111 111 222 2334444444 356
Q ss_pred EEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC-----CcEEEEECCCC
Q 004924 594 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTL 645 (723)
Q Consensus 594 ~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d-----g~I~iwd~~~~ 645 (723)
.+||..+++-... ..-.+...-.+++ .-+|+..+.|+.+ ..+..||..++
T Consensus 418 e~ydp~~~~W~~~-~~m~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 418 EFYCESSNTWTLI-DDPIYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred EEecCCCCcEeEc-CCCCCCccccEEE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 7888876654321 1111111111222 2467777777754 23444554443
No 442
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=90.92 E-value=24 Score=39.26 Aligned_cols=147 Identities=18% Similarity=0.082 Sum_probs=73.8
Q ss_pred CCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEE
Q 004924 497 DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 576 (723)
Q Consensus 497 ~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l 576 (723)
..+...++|.+ |.....+.........+...++|.+++... ..++.+|..+ +...... ++.+.. ..-..+
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G-~v~~~~~---l~~~~~---~~HHD~ 195 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLG-KVIWEYD---LPGGYY---DFHHDI 195 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE-----TTEE----B-S-E
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCC-CEEEeee---cCCccc---cccccc
Confidence 44566666743 555555543222222266778888776555 7888888865 2222222 222100 011256
Q ss_pred EEccCCCEEEEEc--------------CCcEEEEECCCCceeEEecCCCC-------------------------CCCeE
Q 004924 577 QFHPDQIHLLSIH--------------EGQIDVYEAPTLNHTSQLVPDKM-------------------------DLPIT 617 (723)
Q Consensus 577 ~~spdg~~l~~s~--------------dg~I~vwd~~~~~~~~~~~~~~h-------------------------~~~v~ 617 (723)
..-|+|.+|+.+. +..|..+| .+|+.+..+....| =-.+.
T Consensus 196 ~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~N 274 (477)
T PF05935_consen 196 DELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHIN 274 (477)
T ss_dssp EE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EE
T ss_pred EECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccC
Confidence 7788888887643 23466667 67776655432221 12478
Q ss_pred EEEEee-CCcEEEEEeCCCcEEEEECCCCcEEEEeecc
Q 004924 618 YATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLT 654 (723)
Q Consensus 618 ~l~~sp-dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 654 (723)
++.+.+ ++.+++++-.-..|...|..+++....+..+
T Consensus 275 si~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 275 SIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp EEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred ccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 899988 5555555555568999999999998888654
No 443
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.87 E-value=11 Score=33.34 Aligned_cols=111 Identities=15% Similarity=0.076 Sum_probs=67.3
Q ss_pred EEEcCCC-eEEEEECCCcEEEEeCCCC--------cEEEEEcCcCCcEEEEEEcC-----CCCEEEEEeCCCcEEEEeCC
Q 004924 484 FILLPQD-LFAFGFDDSSILVHCPCTK--------KTKAKLKGHQNRITCLAYSL-----SLNVLVSSGADAQLCVWDAV 549 (723)
Q Consensus 484 l~~~p~~-~l~sgs~dg~I~iwd~~~~--------~~~~~l~~~~~~i~~l~~sp-----dg~~l~s~s~dg~I~vwd~~ 549 (723)
-.|.... .|++++..|.|.|++.... ..+..+. ....|++++-.+ +...|+.|+ ...+-.||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 3455555 7888888999999986633 2334443 445677765433 234566655 5678899998
Q ss_pred CCceeeceeeeeeecCCCCCCCCeEEEEEcc----CCCEEEEEcCCcEEEEECCCCceeEE
Q 004924 550 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHP----DQIHLLSIHEGQIDVYEAPTLNHTSQ 606 (723)
Q Consensus 550 ~~~~~~~~~l~~~~~~~~~~~~~v~~l~~sp----dg~~l~~s~dg~I~vwd~~~~~~~~~ 606 (723)
....+-.+.+. ..|.++.+-. +...+++|.+..|.-||....+...+
T Consensus 82 ~N~d~Fyke~~----------DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 82 NNSDLFYKEVP----------DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cCchhhhhhCc----------cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 75332222222 5677777642 23556667778888888754444333
No 444
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=90.83 E-value=20 Score=36.18 Aligned_cols=267 Identities=10% Similarity=0.046 Sum_probs=135.6
Q ss_pred CCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccce
Q 004924 336 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 415 (723)
Q Consensus 336 dg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~ 415 (723)
.+++...+..+.-++|.|+.+...+...-.+.+ .+--.++.. .|++...+.-|.-..+.|+.+...
T Consensus 95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-----~gyaygv~v--sGn~aYVadlddgfLivdvsdpss------- 160 (370)
T COG5276 95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-----DGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSS------- 160 (370)
T ss_pred cccEEEEEcCCCceEEEeccCCCCcceeccccC-----CceEEEEEe--cCCEEEEeeccCcEEEEECCCCCC-------
Confidence 467788888888999999987443333333321 123344444 577877777566666777764322
Q ss_pred eeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcCCCcE---EEEEeCCCCCeEEEEEcCCC-
Q 004924 416 NMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQT---LATFANPPPIATYFILLPQD- 490 (723)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~I~vwd~~~~~~---~~~~~~~~~~v~~l~~~p~~- 490 (723)
..+.-... .....-..++.||++-..+. |+-+.+-|+..... +... .....+.++..+++-
T Consensus 161 -----------P~lagrya--~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~-n~g~g~~sv~vsdnr~ 226 (370)
T COG5276 161 -----------PQLAGRYA--LPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSY-NTGPGTYSVSVSDNRA 226 (370)
T ss_pred -----------ceeeeeec--cCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEE-ecCCceEEEEecCCee
Confidence 11111111 12333456777888877776 99999999875432 2222 223356677777665
Q ss_pred eEEEEECCCcEEEEeCCCCcEEEEEcC-cCCcEEEE-EEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCC
Q 004924 491 LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCL-AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP 568 (723)
Q Consensus 491 ~l~sgs~dg~I~iwd~~~~~~~~~l~~-~~~~i~~l-~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~ 568 (723)
+++.. +.-+.+-|..+.+....+.. .+..+.++ .+.-.+++...+..+.-+.+-|+.+.. -. +...+..
T Consensus 227 y~vvy--~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~------sp-fl~ss~~ 297 (370)
T COG5276 227 YLVVY--DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPP------SP-FLSSSLD 297 (370)
T ss_pred EEEEc--ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCC------CC-chhcccc
Confidence 44443 34466667665553333322 11222222 333346667777767777777776521 00 0111100
Q ss_pred C-CCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECC
Q 004924 569 E-TTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 569 ~-~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~ 643 (723)
. ......+..+ +.++.........+-|...-+...... .....+.+.+.+-+.+.+.+...++-+.+|+..
T Consensus 298 t~g~~a~gi~ay--~~y~yiadkn~g~vV~~s~~s~m~~~~--g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 298 TAGYQAAGIRAY--GNYNYIADKNTGAVVDASPPSMMDKRP--GRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred CCCccccceEEe--cCeeEeccCCceEEEeCCChhhccccc--CcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 0 0112222222 233333222233334443222111111 112223344455566688888888889898753
No 445
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.82 E-value=3.2 Score=44.70 Aligned_cols=89 Identities=12% Similarity=0.046 Sum_probs=60.2
Q ss_pred CCeEEEEEeeCCcEEEEEeCCCcEEEEE---------CCCCcEE--EEeec---ccccCCCCccCccceEEEEEecCC--
Q 004924 614 LPITYATYSCDGKCIYVSCKSGHVKVFD---------TSTLELR--CQINL---TAYAQPGTISLELYPLVIAAHPLE-- 677 (723)
Q Consensus 614 ~~v~~l~~spdg~~l~sgs~dg~I~iwd---------~~~~~~~--~~~~~---~~~~~~g~~~~~v~~~~v~~sp~d-- 677 (723)
..|..+..++.|..++-.+.+|.+.++= ++.|+.. ++..+ .-|. .+..+....++|||+.
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ft----ss~~ltl~Qa~WHP~S~~ 179 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFT----SSTSLTLKQAAWHPSSIL 179 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeec----cCCceeeeeccccCCccC
Confidence 3567788899999999999999765432 1233221 11111 0111 1233556699999943
Q ss_pred CCEEEEEECCCcEEEEecCCCceeeecCC
Q 004924 678 PNRIALGLTNGRVHVIEPLESEVEWGKLP 706 (723)
Q Consensus 678 ~~~las~s~Dg~v~iWd~~~~~~~w~~~~ 706 (723)
...|..-+.|.++|||+..+....|-.++
T Consensus 180 D~hL~iL~sdnviRiy~lS~~telylqpg 208 (741)
T KOG4460|consen 180 DPHLVLLTSDNVIRIYSLSEPTELYLQPG 208 (741)
T ss_pred CceEEEEecCcEEEEEecCCcchhhccCC
Confidence 46788888999999999999988888865
No 446
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.82 E-value=0.031 Score=58.87 Aligned_cols=147 Identities=12% Similarity=0.099 Sum_probs=98.5
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E-cCCcEEEEECCCC
Q 004924 524 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTL 601 (723)
Q Consensus 524 ~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~dg~I~vwd~~~~ 601 (723)
...|.|.+.-++.++.+..+..||-... ..+. ...+ +....++|..++..+++ . ..+.+++||+.+.
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq-----~~le----~n~t--g~aldm~wDkegdvlavlAek~~piylwd~n~e 107 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQ-----VILE----LNPT--GKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE 107 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcc-----eecc----cCCc--hhHhhhhhccccchhhhhhhcCCCeeechhhhh
Confidence 4567887777888888989999987652 1111 1111 45668889888888776 4 7789999999754
Q ss_pred ceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEE
Q 004924 602 NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 681 (723)
Q Consensus 602 ~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~l 681 (723)
.. +.+...+ ...-.-+.|++.+..++.|...|.+.|++..+.+.+.+. |.|.. ..++.+|.+ .++.
T Consensus 108 yt-qqLE~gg-~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~--------Gkh~R--Rgtq~av~l--Ed~v 173 (615)
T KOG2247|consen 108 YT-QQLESGG-TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM--------GKHQR--RGTQIAVTL--EDYV 173 (615)
T ss_pred hH-HHHhccC-cchHHHHhhccCCccccccccccceEEEeccchhhhhhh--------ccccc--ceeEEEecc--ccee
Confidence 32 2222211 111222789999999999999999999998887655444 32232 355899998 4577
Q ss_pred EEEECCCcEEEEec
Q 004924 682 ALGLTNGRVHVIEP 695 (723)
Q Consensus 682 as~s~Dg~v~iWd~ 695 (723)
+.++.|..+.+-..
T Consensus 174 il~dcd~~L~v~~q 187 (615)
T KOG2247|consen 174 ILCDCDNTLSVTTQ 187 (615)
T ss_pred eecCcHHHHHHhhh
Confidence 77777766554443
No 447
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.78 E-value=1.1 Score=43.96 Aligned_cols=74 Identities=9% Similarity=0.143 Sum_probs=52.5
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCceeece-eeeeeec-------CCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEEC
Q 004924 527 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSK-FLHSFQT-------GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 598 (723)
Q Consensus 527 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~-~l~~~~~-------~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~ 598 (723)
+..++.++++.+.+|.+++||+.+++..... .+..+.. ... ..|..+.++.+|.-+++-.+|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~---~~i~~~~lt~~G~PiV~lsng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSS---PNITSCSLTSNGVPIVTLSNGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCC---CcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence 4456788999999999999999987543322 2221221 122 6788999999998888766788999998
Q ss_pred CCCce
Q 004924 599 PTLNH 603 (723)
Q Consensus 599 ~~~~~ 603 (723)
.-+.-
T Consensus 95 ~L~~W 99 (219)
T PF07569_consen 95 DLGCW 99 (219)
T ss_pred cccee
Confidence 64443
No 448
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.78 E-value=3.4 Score=48.60 Aligned_cols=124 Identities=15% Similarity=0.068 Sum_probs=81.0
Q ss_pred CCcEEEEEcCCCcEEE-----EE------eCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcE-EEEEcCcCCcE
Q 004924 457 GGKISIFSLETFQTLA-----TF------ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRI 522 (723)
Q Consensus 457 dg~I~vwd~~~~~~~~-----~~------~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~-~~~l~~~~~~i 522 (723)
+..|..||+++..... -+ ........++.|+|.- ..+++..|+.|++..+..-.. +..+ ......
T Consensus 123 g~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~ 201 (1405)
T KOG3630|consen 123 GEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQ 201 (1405)
T ss_pred CceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc-Ccccce
Confidence 3468889986532211 11 1222345688999987 778888999999887654322 1222 245678
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE
Q 004924 523 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 587 (723)
Q Consensus 523 ~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~ 587 (723)
++++|+|.|+.++.|-..|++.-|-..-... ..+...+.... ..|.+++|-....++++
T Consensus 202 Tav~WSprGKQl~iG~nnGt~vQy~P~leik---~~ip~Pp~~e~---yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 202 TAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK---SEIPEPPVEEN---YRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred eeEEeccccceeeEecCCCeEEEeeccccee---ecccCCCcCCC---cceeEEEEecceeEEEE
Confidence 9999999999999999999998886654211 11111111111 68999999988777776
No 449
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.56 E-value=27 Score=37.35 Aligned_cols=198 Identities=10% Similarity=-0.055 Sum_probs=108.2
Q ss_pred CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCC--CCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEcCcC-CcEEE
Q 004924 449 GSHLFSAS-GGKISIFSLETFQTLATFANPP--PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRITC 524 (723)
Q Consensus 449 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~--~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~~-~~i~~ 524 (723)
+..+..+. +|.|.-.|..++..+....... ..+.+-....+|.++.++.++.++.+|..+|+.+....... ..+..
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 44444444 8888888888887665433221 22222223336688889999999999998899887776554 11112
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEc--CCcEEEEECCCCc
Q 004924 525 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH--EGQIDVYEAPTLN 602 (723)
Q Consensus 525 l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~--dg~I~vwd~~~~~ 602 (723)
-..-.++ .+..++.++.+.-.|..+|+..-......- .. ..+..-....++..++... ++.+.-.|..+|.
T Consensus 148 ~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~-----~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 148 PPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAP-LS-----LSIYGSPAIASGTVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred CcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCc-cc-----cccccCceeecceEEEecCCCcceEEEEEccCCc
Confidence 1222233 344444678888888887755333222210 00 1111111123333333333 5567777887887
Q ss_pred eeEEecCCC--CCCCeEEEEEee-----CCcEEEEEeCCCcEEEEECCCCcEEEEeec
Q 004924 603 HTSQLVPDK--MDLPITYATYSC-----DGKCIYVSCKSGHVKVFDTSTLELRCQINL 653 (723)
Q Consensus 603 ~~~~~~~~~--h~~~v~~l~~sp-----dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 653 (723)
.....+... ....+....... .+.-++.++.+|.+...+..+|+.+..+..
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 665532110 011110000111 122346777788899999999999988865
No 450
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.18 E-value=1.5 Score=51.42 Aligned_cols=140 Identities=12% Similarity=0.076 Sum_probs=86.3
Q ss_pred eEEEEEcCCC---eEEEEECCCcEEEEeCCCCcE-----EEEEcC------cCCcEEEEEEcCCCC-EEEEEeCCCcEEE
Q 004924 481 ATYFILLPQD---LFAFGFDDSSILVHCPCTKKT-----KAKLKG------HQNRITCLAYSLSLN-VLVSSGADAQLCV 545 (723)
Q Consensus 481 v~~l~~~p~~---~l~sgs~dg~I~iwd~~~~~~-----~~~l~~------~~~~i~~l~~spdg~-~l~s~s~dg~I~v 545 (723)
+..+...+|+ .++..+.+-.|..||+++-.. -..+.. ......++.|+|.-. ..+.+..|+.|++
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V 182 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV 182 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence 3445555666 233334444788899875311 111211 223455788888543 3566778999988
Q ss_pred EeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecCCC--CCCCeEEEEEe
Q 004924 546 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK--MDLPITYATYS 622 (723)
Q Consensus 546 wd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~--h~~~v~~l~~s 622 (723)
..+.... .....++-. ...++++|+|.|+.+++| ..|++.-|.. +++....+.... ....|.+++|-
T Consensus 183 ~~~~~~~----~~v~s~p~t-----~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl 252 (1405)
T KOG3630|consen 183 KSTKQLA----QNVTSFPVT-----NSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWL 252 (1405)
T ss_pred hhhhhhh----hhhcccCcc-----cceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEe
Confidence 8775421 112212222 578999999999999998 7788888876 455444443321 14679999998
Q ss_pred eCCcEEEE
Q 004924 623 CDGKCIYV 630 (723)
Q Consensus 623 pdg~~l~s 630 (723)
....++++
T Consensus 253 ~t~eflvv 260 (1405)
T KOG3630|consen 253 STQEFLVV 260 (1405)
T ss_pred cceeEEEE
Confidence 77777765
No 451
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=90.11 E-value=24 Score=36.22 Aligned_cols=168 Identities=13% Similarity=0.081 Sum_probs=89.7
Q ss_pred cEEEEEcCCCcEEEEEeCC------CCCeEEEEEcCC------C-eEEEEECCCcEEEEeCCCCcEEEEEcCcC------
Q 004924 459 KISIFSLETFQTLATFANP------PPIATYFILLPQ------D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ------ 519 (723)
Q Consensus 459 ~I~vwd~~~~~~~~~~~~~------~~~v~~l~~~p~------~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~------ 519 (723)
.+.+||+.+++.++++.-+ ......+.+... + ..++=+..+.|.|+|+.+++..+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 5778999999988887522 345667777551 2 33344445689999999987766554321
Q ss_pred -------------CcEEEEEEcC---CCCEEEEEeCCCcEEEEeCCCC-----ceeece----eeeeeecCCCCCCCCeE
Q 004924 520 -------------NRITCLAYSL---SLNVLVSSGADAQLCVWDAVGW-----KKLCSK----FLHSFQTGLVPETTIVN 574 (723)
Q Consensus 520 -------------~~i~~l~~sp---dg~~l~s~s~dg~I~vwd~~~~-----~~~~~~----~l~~~~~~~~~~~~~v~ 574 (723)
..+..++.+| +|+.|.-....+. ++|.+.+. ...... .++.+ +..+ ....
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~l--G~k~--~~s~ 189 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDL--GDKG--SQSD 189 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEE--EE-----SEC
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceec--cccC--CCCc
Confidence 2255555544 5556665544332 23333221 000000 11111 1110 3456
Q ss_pred EEEEccCCCEEEE-EcCCcEEEEECCCCc---eeEEecCCCC-CCCeEEEEEee--CCcEEEEE
Q 004924 575 HIQFHPDQIHLLS-IHEGQIDVYEAPTLN---HTSQLVPDKM-DLPITYATYSC--DGKCIYVS 631 (723)
Q Consensus 575 ~l~~spdg~~l~~-s~dg~I~vwd~~~~~---~~~~~~~~~h-~~~v~~l~~sp--dg~~l~sg 631 (723)
.++++++|...++ -..+.|..|+..+.- ....+..... -..+.++.+.+ +|.+.+..
T Consensus 190 g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 190 GMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred eEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 7888998888877 488899999987511 1222222222 45677888877 55544433
No 452
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.78 E-value=25 Score=35.78 Aligned_cols=205 Identities=16% Similarity=0.148 Sum_probs=113.2
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeecccCCC--CceeEEecCC---CCCCCceEEEEEeCCCCE------------EEEEE
Q 004924 331 STSLPDADSAVCAKSLEKSVNLKLQLINEP--SECRTLLLPD---NSFGGRVVRLIYSHSGDF------------LVALT 393 (723)
Q Consensus 331 ~~~spdg~~la~~s~dg~v~iw~~~~~~~~--~~~~~~~l~~---~~h~~~V~~l~fspdg~~------------las~s 393 (723)
..++|.+..-++....+...+|+......+ .....+.+|. .......+.+.|+....+ ++.++
T Consensus 28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~t 107 (336)
T TIGR03118 28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVT 107 (336)
T ss_pred eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEe
Confidence 348898888888888899999998721111 1222344553 112356778888754433 56788
Q ss_pred CCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeE-EEEEe----CCEEEEEe--CCcEEEEEcC
Q 004924 394 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALR----GSHLFSAS--GGKISIFSLE 466 (723)
Q Consensus 394 ~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~s----~~~l~s~s--dg~I~vwd~~ 466 (723)
+||+|.-|...-. .....-...++|.. ....|+ .+++. +++|..+. .++|.|+|-.
T Consensus 108 EdGTisaW~p~v~-----~t~~~~~~~~~d~s------------~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 108 EDGTLSGWAPALG-----TTRMTRAEIVVDAS------------QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred CCceEEeecCcCC-----cccccccEEEEccC------------CCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 8999999984311 11000001112211 123332 34444 67888887 7999999853
Q ss_pred CCcEE--EEEeCCC--------------C--CeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcC--cCCcEEEE
Q 004924 467 TFQTL--ATFANPP--------------P--IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCL 525 (723)
Q Consensus 467 ~~~~~--~~~~~~~--------------~--~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~--~~~~i~~l 525 (723)
=.+.. ..+.... . -|+-..-.++. .=+.|..-|.|-+||.. |+.++.+.. .-..-+.+
T Consensus 171 f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~ 249 (336)
T TIGR03118 171 FRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGL 249 (336)
T ss_pred cccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCcee
Confidence 22111 0011000 0 01111111222 22334445789999965 788887742 23344566
Q ss_pred EEcC------CCCEEEEEeCCCcEEEEeCCCCce
Q 004924 526 AYSL------SLNVLVSSGADAQLCVWDAVGWKK 553 (723)
Q Consensus 526 ~~sp------dg~~l~s~s~dg~I~vwd~~~~~~ 553 (723)
+..| .|..|+---.||+|..||..+|..
T Consensus 250 a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~ 283 (336)
T TIGR03118 250 AIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQ 283 (336)
T ss_pred eeChhhhCCCCCCeEEeecCCceeEEecCCCCce
Confidence 6654 456677666799999999988643
No 453
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.72 E-value=33 Score=37.03 Aligned_cols=151 Identities=8% Similarity=-0.020 Sum_probs=82.7
Q ss_pred EEEEEcCCC-eEEEEECCCcEEEEeCCCCcE--EEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeecee
Q 004924 482 TYFILLPQD-LFAFGFDDSSILVHCPCTKKT--KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 558 (723)
Q Consensus 482 ~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~--~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~ 558 (723)
..+..++++ .++.|.....++-||- |.. ...-......+..+.+.+++..++++ .+|.+. |....+..-....
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~ 317 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFD 317 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccc
Confidence 344566777 5555554333333442 221 11112234568899999998877655 566653 3443432100001
Q ss_pred eeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecC-CCCCCCeEEEEEeeCCcEEEEEeCCCcE
Q 004924 559 LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCKSGHV 637 (723)
Q Consensus 559 l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~-~~h~~~v~~l~~spdg~~l~sgs~dg~I 637 (723)
+......... ..+.++.+.+++..+++|..|.+.... ..|+.-..... ..-...++.+.|.++++.+++| .+|.|
T Consensus 318 f~~~~~~~~~--~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~i 393 (398)
T PLN00033 318 FEEADIKSRG--FGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVL 393 (398)
T ss_pred eeecccCCCC--cceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEE
Confidence 2211111110 358899999999999889988777664 34544333321 1124568899987776655555 57776
Q ss_pred EEE
Q 004924 638 KVF 640 (723)
Q Consensus 638 ~iw 640 (723)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 544
No 454
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.61 E-value=5.2 Score=43.00 Aligned_cols=138 Identities=13% Similarity=0.211 Sum_probs=87.6
Q ss_pred CEEEEEe--CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC--------eEEEEECCCcEEEEeCCC-CcEEEEEcC-
Q 004924 450 SHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--------LFAFGFDDSSILVHCPCT-KKTKAKLKG- 517 (723)
Q Consensus 450 ~~l~s~s--dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~--------~l~sgs~dg~I~iwd~~~-~~~~~~l~~- 517 (723)
++++..+ ...+.-.|++.|+.+..+..|... -+.|.|+. .-++|-.+..|.-.|.+- |..+.....
T Consensus 480 sli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esK 557 (776)
T COG5167 480 SLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESK 557 (776)
T ss_pred ceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeeh
Confidence 3444433 467777888999999988877665 46677753 234566677777777653 333322211
Q ss_pred ---cCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEE
Q 004924 518 ---HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQID 594 (723)
Q Consensus 518 ---~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~ 594 (723)
.....+|..-.. ..+++.++..|-|++||.-+-. ..+...+-. ..|..+..+.+|+++++.....+.
T Consensus 558 dY~tKn~Fss~~tTe-sGyIa~as~kGDirLyDRig~r------AKtalP~lG---~aIk~idvta~Gk~ilaTCk~yll 627 (776)
T COG5167 558 DYKTKNKFSSGMTTE-SGYIAAASRKGDIRLYDRIGKR------AKTALPGLG---DAIKHIDVTANGKHILATCKNYLL 627 (776)
T ss_pred hcccccccccccccc-CceEEEecCCCceeeehhhcch------hhhcCcccc---cceeeeEeecCCcEEEEeecceEE
Confidence 112233333333 3489999999999999975411 111122222 679999999999999987777888
Q ss_pred EEECC
Q 004924 595 VYEAP 599 (723)
Q Consensus 595 vwd~~ 599 (723)
+-|++
T Consensus 628 L~d~~ 632 (776)
T COG5167 628 LTDVP 632 (776)
T ss_pred EEecc
Confidence 88865
No 455
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=89.45 E-value=8.1 Score=43.81 Aligned_cols=133 Identities=8% Similarity=0.032 Sum_probs=71.2
Q ss_pred EEEEcCCC-eEEEEECC----CcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCc-----EEEEeCCCCc
Q 004924 483 YFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ-----LCVWDAVGWK 552 (723)
Q Consensus 483 ~l~~~p~~-~l~sgs~d----g~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~-----I~vwd~~~~~ 552 (723)
.+.|..|. +.+++... ..+++|.. .|+.-..-....+.-..+.|-|.|..+++-..||. +.++..++ -
T Consensus 206 ~i~wrgD~~y~~v~r~Ee~prra~rvysr-eg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNG-L 283 (1243)
T COG5290 206 IIFWRGDTEYNLVGRSEERPRRAFRVYSR-EGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNG-L 283 (1243)
T ss_pred EEEEccCcceeeecchhcccccceeeecc-ccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCC-c
Confidence 45565555 55554432 24566652 23322222222333446899999999998876653 55554433 1
Q ss_pred eeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCC
Q 004924 553 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG 625 (723)
Q Consensus 553 ~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg 625 (723)
......+. .+.. ..+..++|+-....++++..+.+.+|-..+-....... ..-..+.-+.|+|..
T Consensus 284 rHGef~lr---~~~d---Ek~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e--~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 284 RHGEFDLR---VGCD---EKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVE--RQIPGISYVKWHPEE 348 (1243)
T ss_pred ccCCcccc---CCch---hhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEe--ecCCCcceeeecccc
Confidence 11111111 1111 35667788777777777788899999876544322221 123345567777744
No 456
>PRK10115 protease 2; Provisional
Probab=89.42 E-value=50 Score=38.68 Aligned_cols=239 Identities=8% Similarity=0.011 Sum_probs=111.0
Q ss_pred CceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEE
Q 004924 375 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 452 (723)
Q Consensus 375 ~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l 452 (723)
-.+..+.+||||++|+.+.+.+--.-++ +.+.+..+|..+.... ...-..++|. ++.|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~----------------l~v~d~~tg~~l~~~i----~~~~~~~~w~~D~~~~ 186 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYG----------------IRFRNLETGNWYPELL----DNVEPSFVWANDSWTF 186 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEE----------------EEEEECCCCCCCCccc----cCcceEEEEeeCCCEE
Confidence 3466788999999988875532211111 2234444443222111 1111458888 5555
Q ss_pred EEEe-C------CcEEEEEcCCC--cEEEEEeCCCCCeE-EEEEcCCC-eEEEEE---CCCcEEEEeCC--CCcEEEEEc
Q 004924 453 FSAS-G------GKISIFSLETF--QTLATFANPPPIAT-YFILLPQD-LFAFGF---DDSSILVHCPC--TKKTKAKLK 516 (723)
Q Consensus 453 ~s~s-d------g~I~vwd~~~~--~~~~~~~~~~~~v~-~l~~~p~~-~l~sgs---~dg~I~iwd~~--~~~~~~~l~ 516 (723)
+.+. + ..|..+++.++ +....+........ ....+.++ .++..+ .++.+.+++.. ++.....+.
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~ 266 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLP 266 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEE
Confidence 4443 2 35788888887 44444554333333 22334366 433333 23578888842 344322222
Q ss_pred CcCCcEEEEEEcCCCCEEEEEeCC--C--cEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E-cC
Q 004924 517 GHQNRITCLAYSLSLNVLVSSGAD--A--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HE 590 (723)
Q Consensus 517 ~~~~~i~~l~~spdg~~l~s~s~d--g--~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~d 590 (723)
........+. +.. ..+...+.. . .|...++.+ ... ...+...... ..+..+.++ +..|+. . .+
T Consensus 267 ~~~~~~~~~~-~~~-~~ly~~tn~~~~~~~l~~~~~~~--~~~---~~~l~~~~~~--~~i~~~~~~--~~~l~~~~~~~ 335 (686)
T PRK10115 267 RRKDHEYSLD-HYQ-HRFYLRSNRHGKNFGLYRTRVRD--EQQ---WEELIPPREN--IMLEGFTLF--TDWLVVEERQR 335 (686)
T ss_pred CCCCCEEEEE-eCC-CEEEEEEcCCCCCceEEEecCCC--ccc---CeEEECCCCC--CEEEEEEEE--CCEEEEEEEeC
Confidence 2222222222 322 333333322 2 233334432 111 1112222111 367788887 335554 3 55
Q ss_pred C--cEEEEECCCCceeEEecCCCCCCCeEEEEEe--eCCc-EEEEEeC---CCcEEEEECCCCc
Q 004924 591 G--QIDVYEAPTLNHTSQLVPDKMDLPITYATYS--CDGK-CIYVSCK---SGHVKVFDTSTLE 646 (723)
Q Consensus 591 g--~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~s--pdg~-~l~sgs~---dg~I~iwd~~~~~ 646 (723)
+ .++++|..++. +..+... ....+..+.++ +++. ++++.++ -+.++.+|..+++
T Consensus 336 g~~~l~~~~~~~~~-~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 336 GLTSLRQINRKTRE-VIGIAFD-DPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CEEEEEEEcCCCCc-eEEecCC-CCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 5 45666654333 3343211 12223333444 4444 4443332 3789999998875
No 457
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=88.89 E-value=58 Score=38.73 Aligned_cols=166 Identities=15% Similarity=0.121 Sum_probs=99.1
Q ss_pred CCCCCeEEEEEc---C--CC--eEEEEECCCcEEEEeC------CC---------CcEEEEEcC---cCCcEEEEEEcC-
Q 004924 476 NPPPIATYFILL---P--QD--LFAFGFDDSSILVHCP------CT---------KKTKAKLKG---HQNRITCLAYSL- 529 (723)
Q Consensus 476 ~~~~~v~~l~~~---p--~~--~l~sgs~dg~I~iwd~------~~---------~~~~~~l~~---~~~~i~~l~~sp- 529 (723)
....+|..|+|. . +. ..+..-....+.|+.. .. ..++..+.. ...+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 445677777776 2 11 3444445556677661 11 123333332 234677899999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeec---CCC----CCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCc
Q 004924 530 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT---GLV----PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN 602 (723)
Q Consensus 530 dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~---~~~----~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~ 602 (723)
+...+|+....|...|||+..+.......+. +.. |+. .....-..+.|.++...|+++....+.++|+++..
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~-~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~ 235 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLR-LSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNW 235 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCccee-eccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCC
Confidence 4568999999999999999332211111111 111 110 00133457889999899999999999999998776
Q ss_pred eeEEecCCCCCCCeEEEEEeeC--CcEEEEEeCCCcEEEEECCC
Q 004924 603 HTSQLVPDKMDLPITYATYSCD--GKCIYVSCKSGHVKVFDTST 644 (723)
Q Consensus 603 ~~~~~~~~~h~~~v~~l~~spd--g~~l~sgs~dg~I~iwd~~~ 644 (723)
....+........|..+.-+|+ +..++-. ...|...++..
T Consensus 236 ~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 236 QTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred ccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence 5332222233677888888876 2322222 25677777776
No 458
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.15 E-value=13 Score=42.62 Aligned_cols=170 Identities=14% Similarity=0.147 Sum_probs=92.4
Q ss_pred CCEEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEc
Q 004924 449 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 528 (723)
Q Consensus 449 ~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~s 528 (723)
.++++.+..+.|.||+...-..... ..++..+...|. .+...|+.+..|. ....|+.+...
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~----~~p~~~~~t~p~---~~~~~D~~~s~~p------------~PHtIN~i~v~ 109 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPS----RKPCLRFDTKPE---FTSTPDRLISTWP------------FPHTINFIKVG 109 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccc----cccccccccCcc---ccccccccccCCC------------CCceeeEEEec
Confidence 6678888899999999754222110 001111111221 1122233232222 11234444333
Q ss_pred C--CCCEEEEEeCCCcEEEEeCCCC-----------ce----eeceeeeeeecCCCCCCCCeEEEEEc--cCCCEEEEE-
Q 004924 529 L--SLNVLVSSGADAQLCVWDAVGW-----------KK----LCSKFLHSFQTGLVPETTIVNHIQFH--PDQIHLLSI- 588 (723)
Q Consensus 529 p--dg~~l~s~s~dg~I~vwd~~~~-----------~~----~~~~~l~~~~~~~~~~~~~v~~l~~s--pdg~~l~~s- 588 (723)
. +...|+.+.+||.|.+|.++.- +. ....+...+..+ ..+++++++ ...++||+|
T Consensus 110 ~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~-----~SaWGLdIh~~~~~rlIAVSs 184 (717)
T PF08728_consen 110 DLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVG-----ASAWGLDIHDYKKSRLIAVSS 184 (717)
T ss_pred ccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecC-----CceeEEEEEecCcceEEEEec
Confidence 2 4467888899999999976320 00 000111111111 678899998 778888886
Q ss_pred cCCcEEEEECCCCce-eEEecCCCCCCCeEEEEEeeCC-----c-EEEEEeCCCcEEEEEC
Q 004924 589 HEGQIDVYEAPTLNH-TSQLVPDKMDLPITYATYSCDG-----K-CIYVSCKSGHVKVFDT 642 (723)
Q Consensus 589 ~dg~I~vwd~~~~~~-~~~~~~~~h~~~v~~l~~spdg-----~-~l~sgs~dg~I~iwd~ 642 (723)
....|.||-...... ........+...|.+++|-++. . +|++++-.|.+.+|++
T Consensus 185 Ns~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 185 NSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred CCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 555777776543211 1111112346778899987643 2 7888888999999887
No 459
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=87.10 E-value=11 Score=39.67 Aligned_cols=112 Identities=17% Similarity=0.118 Sum_probs=59.7
Q ss_pred CeEEEEEccCCCEEEEEcCCcEEEEECCCCce---eEEec--CCCCCCCeEEEEEeeC---CcEEEEEeC-C--------
Q 004924 572 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH---TSQLV--PDKMDLPITYATYSCD---GKCIYVSCK-S-------- 634 (723)
Q Consensus 572 ~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~---~~~~~--~~~h~~~v~~l~~spd---g~~l~sgs~-d-------- 634 (723)
..++|+|.|||+.+++-..|.|++++ ..+.. +.... ..........++++|+ ..+|++... .
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 46799999999998887899999999 44443 22221 1123567899999994 234443322 1
Q ss_pred CcEEEEECCCC--cE---EEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCc
Q 004924 635 GHVKVFDTSTL--EL---RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR 689 (723)
Q Consensus 635 g~I~iwd~~~~--~~---~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~ 689 (723)
..|.-|....+ .. ...+........+ .+... .++|.| |+.+.++.++.+.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~--~H~g~--~l~fgp-DG~LYvs~G~~~~ 136 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSG--NHNGG--GLAFGP-DGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSS--SS-EE--EEEE-T-TSEEEEEEB-TTT
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCC--CCCCc--cccCCC-CCcEEEEeCCCCC
Confidence 23444544433 11 1111111110112 22223 799999 8877777765543
No 460
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=87.07 E-value=22 Score=38.97 Aligned_cols=113 Identities=14% Similarity=0.045 Sum_probs=60.8
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCC------CEEEEE--c--
Q 004924 520 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ------IHLLSI--H-- 589 (723)
Q Consensus 520 ~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg------~~l~~s--~-- 589 (723)
...+.++|.|||+++++--..|.|++++..++.......+..+..... ......|+++|+- .+|+.+ .
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~g--e~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQ--HNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCC--CCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 456789999999877766557999999866543211111111111101 1678999999884 345442 1
Q ss_pred -------CCcEEEEECCCC-------ceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC
Q 004924 590 -------EGQIDVYEAPTL-------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS 634 (723)
Q Consensus 590 -------dg~I~vwd~~~~-------~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d 634 (723)
...|.-|.+... +.+..-.+......-..++|.|||.+.++.+..
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 223555554321 111111111112234468899999866655543
No 461
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=86.73 E-value=0.8 Score=52.14 Aligned_cols=162 Identities=10% Similarity=0.079 Sum_probs=92.4
Q ss_pred CCCCCeEEEEEe-CC--EEEEEe-CCcEEEEEcC--CCcEEEE-----EeCCCCCeEEEEEcC---CC-eEEEEECCCcE
Q 004924 437 DPKDSISCFALR-GS--HLFSAS-GGKISIFSLE--TFQTLAT-----FANPPPIATYFILLP---QD-LFAFGFDDSSI 501 (723)
Q Consensus 437 ~h~~~V~~v~~s-~~--~l~s~s-dg~I~vwd~~--~~~~~~~-----~~~~~~~v~~l~~~p---~~-~l~sgs~dg~I 501 (723)
+..+.|..+.|. .+ .+. . -|...||++. .|+.... .......+.-+.|+| +. .+..+-.++.|
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i 207 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI 207 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence 566777777776 11 122 2 3778888875 3433222 222333445566665 44 77788888888
Q ss_pred EEEeCCCCcEEEEEcCcCCcEEEEE-----------EcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCC
Q 004924 502 LVHCPCTKKTKAKLKGHQNRITCLA-----------YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 570 (723)
Q Consensus 502 ~iwd~~~~~~~~~l~~~~~~i~~l~-----------~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~ 570 (723)
++...++... ..+.+|...+.+++ .+|||+.++.++.||.++.|.+.-.......+++ .-..|+. .
T Consensus 208 ~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclh-ewkphd~-~ 284 (1283)
T KOG1916|consen 208 RLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLH-EWKPHDK-H 284 (1283)
T ss_pred eEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhh-ccCCCCC-C
Confidence 8877654322 44555766555443 5899999999999999999977532222223333 2223331 0
Q ss_pred CCeEEEEEccC-------CCE--EEEE--cCCcEEEEECCCCcee
Q 004924 571 TIVNHIQFHPD-------QIH--LLSI--HEGQIDVYEAPTLNHT 604 (723)
Q Consensus 571 ~~v~~l~~spd-------g~~--l~~s--~dg~I~vwd~~~~~~~ 604 (723)
..|..+ ++.+ +.+ ++++ .+..+++|.....+|.
T Consensus 285 p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 285 PRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred Cceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 223333 4432 222 3333 4467899988777765
No 462
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=86.61 E-value=18 Score=41.52 Aligned_cols=106 Identities=12% Similarity=0.156 Sum_probs=66.4
Q ss_pred eEEEEEe----CCEEEEEe-CCcEEEEEcCC-------C----c---------EEEEEeCCCCCeEEEEEc--CCC-eEE
Q 004924 442 ISCFALR----GSHLFSAS-GGKISIFSLET-------F----Q---------TLATFANPPPIATYFILL--PQD-LFA 493 (723)
Q Consensus 442 V~~v~~s----~~~l~s~s-dg~I~vwd~~~-------~----~---------~~~~~~~~~~~v~~l~~~--p~~-~l~ 493 (723)
|+.+... .+.|+.|. ||.|.+|.+++ . + +...+ .....++.++++ ... .||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEE
Confidence 4455444 44566666 89999997632 1 0 01111 234578899998 656 888
Q ss_pred EEECCCcEEEEeCCCC--cEE-EEEcCcCCcEEEEEEcCCC-----C-EEEEEeCCCcEEEEeC
Q 004924 494 FGFDDSSILVHCPCTK--KTK-AKLKGHQNRITCLAYSLSL-----N-VLVSSGADAQLCVWDA 548 (723)
Q Consensus 494 sgs~dg~I~iwd~~~~--~~~-~~l~~~~~~i~~l~~spdg-----~-~l~s~s~dg~I~vwd~ 548 (723)
+++....|.||-.... +.. ..-..+...|.+|.|-++. . ++++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888787777754331 111 1111256788999996643 2 7888899999998887
No 463
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=86.60 E-value=1.3 Score=50.53 Aligned_cols=68 Identities=16% Similarity=0.305 Sum_probs=40.6
Q ss_pred EcCCC-eEEEEECCCcEEEEeCC-----CCcEEEEEcCcC-CcEEEEEEcCCC---------CEEEEEeC-CCcEEEEeC
Q 004924 486 LLPQD-LFAFGFDDSSILVHCPC-----TKKTKAKLKGHQ-NRITCLAYSLSL---------NVLVSSGA-DAQLCVWDA 548 (723)
Q Consensus 486 ~~p~~-~l~sgs~dg~I~iwd~~-----~~~~~~~l~~~~-~~i~~l~~spdg---------~~l~s~s~-dg~I~vwd~ 548 (723)
.+||| .+++++.||.++.|.+. .-++++.++.|. .+-.|.-|+.+. .++++++. +..+++|..
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 67888 88888888877777643 234556666666 343443344322 13444443 456889987
Q ss_pred CCCce
Q 004924 549 VGWKK 553 (723)
Q Consensus 549 ~~~~~ 553 (723)
..+++
T Consensus 323 a~w~C 327 (1283)
T KOG1916|consen 323 APWQC 327 (1283)
T ss_pred cchhh
Confidence 77544
No 464
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=86.29 E-value=53 Score=35.46 Aligned_cols=151 Identities=11% Similarity=0.002 Sum_probs=80.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCC
Q 004924 522 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL 601 (723)
Q Consensus 522 i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~ 601 (723)
...+..+++|..++.+.....++-||--.. ...++. .... ..+.++.+.+++..++++..|.+.. ....+
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~---~W~~~~-~~~~-----~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G 310 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQP---YWQPHN-RASA-----RRIQNMGWRADGGLWLLTRGGGLYV-SKGTG 310 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCc---ceEEec-CCCc-----cceeeeeEcCCCCEEEEeCCceEEE-ecCCC
Confidence 344566777776666554433334443220 001111 1111 5788999999999998888777654 34344
Q ss_pred c-----eeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecC
Q 004924 602 N-----HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 676 (723)
Q Consensus 602 ~-----~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~ 676 (723)
+ .............+.++.|.+++..+++| ..|.+.... ..|+.-....... + -....+ .+.|.+
T Consensus 311 ~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~----~-~~~~ly--~v~f~~- 380 (398)
T PLN00033 311 LTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGAD----N-IAANLY--SVKFFD- 380 (398)
T ss_pred CcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccC----C-CCccee--EEEEcC-
Confidence 3 12222111113458899998887765555 567766553 3343222211000 0 022345 888876
Q ss_pred CCCEEEEEECCCcEEEE
Q 004924 677 EPNRIALGLTNGRVHVI 693 (723)
Q Consensus 677 d~~~las~s~Dg~v~iW 693 (723)
+++- ...+.+|.|.-|
T Consensus 381 ~~~g-~~~G~~G~il~~ 396 (398)
T PLN00033 381 DKKG-FVLGNDGVLLRY 396 (398)
T ss_pred CCce-EEEeCCcEEEEe
Confidence 4444 445578877654
No 465
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=85.84 E-value=35 Score=32.97 Aligned_cols=119 Identities=12% Similarity=0.069 Sum_probs=68.6
Q ss_pred EEEEccCCCEEEEEcCCcEEEEECC--CCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC---C---cEEEE---ECC
Q 004924 575 HIQFHPDQIHLLSIHEGQIDVYEAP--TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---G---HVKVF---DTS 643 (723)
Q Consensus 575 ~l~~spdg~~l~~s~dg~I~vwd~~--~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d---g---~I~iw---d~~ 643 (723)
.++-++.+..+++...+.|.+|++. ..+...++.. -+.|..+.++..|+||++--++ . .+|+| +..
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T---v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~ 98 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST---VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ 98 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc---hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh
Confidence 4444443344444677789999987 3445566643 6889999999999999986543 2 45654 332
Q ss_pred --CCcEEE-EeecccccCCCCccC-----------ccceEEEEEecCCCCEEEEEECCCcEEEEecCCC
Q 004924 644 --TLELRC-QINLTAYAQPGTISL-----------ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 644 --~~~~~~-~~~~~~~~~~g~~~~-----------~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
..+++. ++.++...++..... ...+.+++..|..|++++.+ ++++.+|.+...
T Consensus 99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~ 165 (215)
T PF14761_consen 99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQ 165 (215)
T ss_pred cccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEE
Confidence 222222 233321111110000 01145788888777766543 568999988654
No 466
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=85.77 E-value=12 Score=39.40 Aligned_cols=108 Identities=15% Similarity=0.072 Sum_probs=57.7
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeee---ecCCCCCCCCeEEEEEccC---CCEEEE--EcC--
Q 004924 521 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF---QTGLVPETTIVNHIQFHPD---QIHLLS--IHE-- 590 (723)
Q Consensus 521 ~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~---~~~~~~~~~~v~~l~~spd---g~~l~~--s~d-- 590 (723)
..+.|+|.|||+.+++ ...|.|++++ ..+.. ...+..+ ..... .....++++|+ ..+|++ +..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~--~~~v~~~~~v~~~~~---~gllgia~~p~f~~n~~lYv~~t~~~~ 75 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSL--KTPVADLPEVFADGE---RGLLGIAFHPDFASNGYLYVYYTNADE 75 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEE--CEEEEE-TTTBTSTT---BSEEEEEE-TTCCCC-EEEEEEEEE-T
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcC--cceeccccccccccc---CCcccceeccccCCCCEEEEEEEcccC
Confidence 3578999999977664 5699999999 44432 1122211 12222 57899999995 344443 321
Q ss_pred ------CcEEEEECCCC-------ceeE-EecC-CCCCCCeEEEEEeeCCcEEEEEeCCC
Q 004924 591 ------GQIDVYEAPTL-------NHTS-QLVP-DKMDLPITYATYSCDGKCIYVSCKSG 635 (723)
Q Consensus 591 ------g~I~vwd~~~~-------~~~~-~~~~-~~h~~~v~~l~~spdg~~l~sgs~dg 635 (723)
..|.-|....+ +.+. .... ......-..+.|.|||.+.++.+..+
T Consensus 76 ~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 76 DGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp SSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred CCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 24544554433 1111 1111 11244566799999997666655443
No 467
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.50 E-value=4.4 Score=39.77 Aligned_cols=75 Identities=13% Similarity=0.074 Sum_probs=49.0
Q ss_pred EeeCCcEEEEEeCCCcEEEEECCCCcEEEEee-cccccCC----CCccCccceEEEEEecCCCCEEEEEECCCcEEEEec
Q 004924 621 YSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN-LTAYAQP----GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 695 (723)
Q Consensus 621 ~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~~~~~~----g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~ 695 (723)
+..++.+|++-+.+|.+++||+.+++.+..-. ....+.. +. .....+..+..+. +|.-+++-+ +|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~-~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDK-SSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccC-CCCCcEEEEEEcC-CCCEEEEEe-CCCEEEecc
Confidence 45689999999999999999999987654331 1111110 00 1122345777776 777777765 578899987
Q ss_pred CCC
Q 004924 696 LES 698 (723)
Q Consensus 696 ~~~ 698 (723)
.-+
T Consensus 95 ~L~ 97 (219)
T PF07569_consen 95 DLG 97 (219)
T ss_pred ccc
Confidence 654
No 468
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=85.25 E-value=52 Score=34.48 Aligned_cols=151 Identities=13% Similarity=0.055 Sum_probs=83.7
Q ss_pred CCeEEEEEcCCC-eEEEEECCCc------EEEEeCCC--C--cEEE-----EEcCcCC--------cEEEEEEcCCCCEE
Q 004924 479 PIATYFILLPQD-LFAFGFDDSS------ILVHCPCT--K--KTKA-----KLKGHQN--------RITCLAYSLSLNVL 534 (723)
Q Consensus 479 ~~v~~l~~~p~~-~l~sgs~dg~------I~iwd~~~--~--~~~~-----~l~~~~~--------~i~~l~~spdg~~l 534 (723)
+....+.+.+++ .+++.+.+|. +..+++.. + ..+. .+....+ ..-++++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 456677887655 6666677776 55555443 1 1111 1111111 34478887788887
Q ss_pred EEEeCC------CcEEEEeCCCCceeeceeeeeee--c----CCCCCCCCeEEEEEccCCCEEEEE------cCC--c--
Q 004924 535 VSSGAD------AQLCVWDAVGWKKLCSKFLHSFQ--T----GLVPETTIVNHIQFHPDQIHLLSI------HEG--Q-- 592 (723)
Q Consensus 535 ~s~s~d------g~I~vwd~~~~~~~~~~~l~~~~--~----~~~~~~~~v~~l~~spdg~~l~~s------~dg--~-- 592 (723)
++.-.+ ..|+.++.. |.......+..-. . ...+......+++++|+|+.|++. .|+ .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 776666 778888877 4443322221100 0 001112678899999999955542 232 1
Q ss_pred -----EEE--EECCC-CceeEE--ecCCC-----CCCCeEEEEEeeCCcEEEE
Q 004924 593 -----IDV--YEAPT-LNHTSQ--LVPDK-----MDLPITYATYSCDGKCIYV 630 (723)
Q Consensus 593 -----I~v--wd~~~-~~~~~~--~~~~~-----h~~~v~~l~~spdg~~l~s 630 (723)
+++ ||..+ ++.... +.... ....+..+.+-+++++|+.
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 444 45544 322222 22221 3567889999999997773
No 469
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.33 E-value=69 Score=35.06 Aligned_cols=72 Identities=13% Similarity=0.010 Sum_probs=47.9
Q ss_pred CeEEEEEcCCC-eEEEEECCCcEEEE-----eC----CCCcEEE---EE-------c-CcCCcEEEEEEcCCC---CEEE
Q 004924 480 IATYFILLPQD-LFAFGFDDSSILVH-----CP----CTKKTKA---KL-------K-GHQNRITCLAYSLSL---NVLV 535 (723)
Q Consensus 480 ~v~~l~~~p~~-~l~sgs~dg~I~iw-----d~----~~~~~~~---~l-------~-~~~~~i~~l~~spdg---~~l~ 535 (723)
.|..+..++.| .++-.+.+|.+.++ .. ..|+..- ++ . ...-.+..++|+|+. ..+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 46677889999 88888888865543 21 2343221 11 1 112245678999976 6788
Q ss_pred EEeCCCcEEEEeCCCC
Q 004924 536 SSGADAQLCVWDAVGW 551 (723)
Q Consensus 536 s~s~dg~I~vwd~~~~ 551 (723)
.-+.|..||+||...-
T Consensus 185 iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEecCcEEEEEecCCc
Confidence 8889999999999873
No 470
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=83.51 E-value=4.4 Score=27.98 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=25.9
Q ss_pred CCeEEEEEeeCC---cEEEEEeCCCcEEEEECCCC
Q 004924 614 LPITYATYSCDG---KCIYVSCKSGHVKVFDTSTL 645 (723)
Q Consensus 614 ~~v~~l~~spdg---~~l~sgs~dg~I~iwd~~~~ 645 (723)
+.+.++.|||+. .+|+.+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 358899999854 47888877899999999953
No 471
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=83.35 E-value=3.7 Score=28.36 Aligned_cols=31 Identities=13% Similarity=0.293 Sum_probs=26.0
Q ss_pred CcEEEEEEcCCC---CEEEEEeCCCcEEEEeCCC
Q 004924 520 NRITCLAYSLSL---NVLVSSGADAQLCVWDAVG 550 (723)
Q Consensus 520 ~~i~~l~~spdg---~~l~s~s~dg~I~vwd~~~ 550 (723)
+.|.++.|+|+. ..|+.+-..|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468899999854 4888888889999999995
No 472
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.30 E-value=4.6 Score=42.12 Aligned_cols=89 Identities=13% Similarity=0.137 Sum_probs=67.1
Q ss_pred CcccchHHHHHHHHHHhhhhhhHHHHHHHhhhcccccc----------chhhHHhhhcCChHHHHHHHhhccccccCcch
Q 004924 123 FEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD----------INYFREYITSGEWDNAEKYLSAFTNMNDNTYS 192 (723)
Q Consensus 123 ~~~~~~~evirlI~q~L~e~G~~~s~~~L~~Es~i~~~----------~~~l~~~i~~G~w~~~~~~l~~l~~~~~~~~~ 192 (723)
+...+.+.++.+|..++...|....+..|-.|+|...+ +.++.+++..|+-.-|++.+.+-...-...-.
T Consensus 111 v~~~~~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~s 190 (394)
T KOG2817|consen 111 VDFDTSQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKSS 190 (394)
T ss_pred cChhHHHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccccc
Confidence 33344455699999999999999999999999999862 78888999999999988877653110011223
Q ss_pred hHHHHHHHHHHHHHHHhhcC
Q 004924 193 AKMFSQIQRQKYLEAVDRQQ 212 (723)
Q Consensus 193 ~~~~~~l~~q~~le~l~~~e 212 (723)
.-.|. +..+.|++++..+.
T Consensus 191 ~LE~~-Lh~l~fl~l~~~g~ 209 (394)
T KOG2817|consen 191 SLEFK-LHSLHFLSLIRGGK 209 (394)
T ss_pred cHHHH-HHHHHHHHHHhcCC
Confidence 44566 88999999998873
No 473
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=83.20 E-value=0.23 Score=52.57 Aligned_cols=135 Identities=14% Similarity=0.179 Sum_probs=90.8
Q ss_pred EEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceeeceee
Q 004924 482 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFL 559 (723)
Q Consensus 482 ~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l-~s~s~dg~I~vwd~~~~~~~~~~~l 559 (723)
-...|-|.+ -++.++.+..+..||-. |+...... .++....++|..+|..+ +.+-..+.+.+||+.+. ..
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~e------yt 109 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE------YT 109 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhh------hH
Confidence 356788888 88888889999999943 55444433 34455677888887664 44566789999999872 11
Q ss_pred eeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEE
Q 004924 560 HSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY 629 (723)
Q Consensus 560 ~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~ 629 (723)
+++..+-. ..-.-+.|++.+..++.+ ..|.+.|++..+.+.+ ...+.|...++++++.+.+..+.
T Consensus 110 qqLE~gg~---~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~i--iv~Gkh~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 110 QQLESGGT---SSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRI--IVMGKHQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred HHHhccCc---chHHHHhhccCCccccccccccceEEEeccchhhh--hhhcccccceeEEEecccceeee
Confidence 21222211 122237889988888886 7789999998765543 33334788899999988765443
No 474
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.88 E-value=23 Score=42.92 Aligned_cols=146 Identities=13% Similarity=0.127 Sum_probs=90.1
Q ss_pred EEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEE--------cCCCCEEEEEeCCCcEEEEeCCC----Cceeeceeeee
Q 004924 494 FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY--------SLSLNVLVSSGADAQLCVWDAVG----WKKLCSKFLHS 561 (723)
Q Consensus 494 sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~--------spdg~~l~s~s~dg~I~vwd~~~----~~~~~~~~l~~ 561 (723)
..+.|+.+.+|+.+++.....+.+....|..+.. .|.=+++++.+.--.|.++-+.- +.........+
T Consensus 94 WiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 94 WITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee
Confidence 3456889999999998777777776666666543 22223444444444555554322 11100000001
Q ss_pred eecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEE--EECCCC---c-ee----------------EEecCCCCCCCeEEE
Q 004924 562 FQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDV--YEAPTL---N-HT----------------SQLVPDKMDLPITYA 619 (723)
Q Consensus 562 ~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~v--wd~~~~---~-~~----------------~~~~~~~h~~~v~~l 619 (723)
+.. .+ ..|.++....+|+.+.+|.||.|+= |....+ + +. ..+. ..+..+|..+
T Consensus 174 i~~--dg--~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~-~~~~dpI~qi 248 (1311)
T KOG1900|consen 174 ISV--DG--VSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP-GSSKDPIRQI 248 (1311)
T ss_pred eec--CC--ceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC-CCCCCcceee
Confidence 111 11 5789999899999999999885542 222211 1 10 0111 1346789999
Q ss_pred EEeeCCcEEEEEeCCCcEEEEECCC
Q 004924 620 TYSCDGKCIYVSCKSGHVKVFDTST 644 (723)
Q Consensus 620 ~~spdg~~l~sgs~dg~I~iwd~~~ 644 (723)
+.......+++-++.|+|.+|++..
T Consensus 249 ~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 249 TIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred EeccccceeeeeccCceEEEEEccC
Confidence 9988888999999999999999986
No 475
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=82.07 E-value=36 Score=30.19 Aligned_cols=117 Identities=7% Similarity=-0.007 Sum_probs=70.5
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCcee---eceeeeeeecCCCCCCCCeEEEEEcc-----CCCEEEEEcCCcEEEEE
Q 004924 526 AYSLSLNVLVSSGADAQLCVWDAVGWKKL---CSKFLHSFQTGLVPETTIVNHIQFHP-----DQIHLLSIHEGQIDVYE 597 (723)
Q Consensus 526 ~~spdg~~l~s~s~dg~I~vwd~~~~~~~---~~~~l~~~~~~~~~~~~~v~~l~~sp-----dg~~l~~s~dg~I~vwd 597 (723)
.|......|++++.-|.|.|.+....... ....+..+.-+ ..|++++-.+ +...|+.|....+..||
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin-----~~italaaG~l~~~~~~D~LliGt~t~llaYD 79 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN-----QEITALAAGRLKPDDGRDCLLIGTQTSLLAYD 79 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC-----CceEEEEEEecCCCCCcCEEEEeccceEEEEE
Confidence 45555567888888899999987643211 11222322222 4677775544 34667779999999999
Q ss_pred CCCCceeEEecCCCCCCCeEEEEEee----CCcEEEEEeCCCcEEEEECCCCcEEEEe
Q 004924 598 APTLNHTSQLVPDKMDLPITYATYSC----DGKCIYVSCKSGHVKVFDTSTLELRCQI 651 (723)
Q Consensus 598 ~~~~~~~~~~~~~~h~~~v~~l~~sp----dg~~l~sgs~dg~I~iwd~~~~~~~~~~ 651 (723)
+.....+..-.. ...|.++.+.. +..++++|+ +..|.-||....+..++.
T Consensus 80 V~~N~d~Fyke~---~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 80 VENNSDLFYKEV---PDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cccCchhhhhhC---ccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEEe
Confidence 987665432221 45677776642 334555554 567777777766655544
No 476
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=81.61 E-value=28 Score=37.72 Aligned_cols=142 Identities=12% Similarity=0.116 Sum_probs=83.8
Q ss_pred eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCC-------EEEEEeCCCcEEEEeCCC-Cceeeceeeeee
Q 004924 491 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-------VLVSSGADAQLCVWDAVG-WKKLCSKFLHSF 562 (723)
Q Consensus 491 ~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~-------~l~s~s~dg~I~vwd~~~-~~~~~~~~l~~~ 562 (723)
.+..|+....++-.|+.-|+.+..+..|... -+.|.|+.+ .-++|-.+..|.-.|.+. |..+........
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY 559 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDY 559 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhc
Confidence 4556666678888899999999999877654 466777532 223444555555556553 211111111100
Q ss_pred ecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEE
Q 004924 563 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 641 (723)
Q Consensus 563 ~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd 641 (723)
. .. ....+..-..+| ++++ +..|.|++||--..+. .+..+ +-+..|..+..+.+|+++++.+. .++-+-|
T Consensus 560 ~-tK----n~Fss~~tTesG-yIa~as~kGDirLyDRig~rA-KtalP-~lG~aIk~idvta~Gk~ilaTCk-~yllL~d 630 (776)
T COG5167 560 K-TK----NKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRA-KTALP-GLGDAIKHIDVTANGKHILATCK-NYLLLTD 630 (776)
T ss_pred c-cc----ccccccccccCc-eEEEecCCCceeeehhhcchh-hhcCc-ccccceeeeEeecCCcEEEEeec-ceEEEEe
Confidence 0 00 223333333444 5665 6889999999643222 22222 33778999999999999988875 5566666
Q ss_pred CC
Q 004924 642 TS 643 (723)
Q Consensus 642 ~~ 643 (723)
+.
T Consensus 631 ~~ 632 (776)
T COG5167 631 VP 632 (776)
T ss_pred cc
Confidence 54
No 477
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.00 E-value=26 Score=37.49 Aligned_cols=72 Identities=13% Similarity=0.091 Sum_probs=48.0
Q ss_pred CCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEE--ecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCC
Q 004924 571 TIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQ--LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 644 (723)
Q Consensus 571 ~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~--~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~ 644 (723)
++|.++.||+|.+.+|+ -.+.+|.+++....+.... .+.......|...+|+.+ .-+|.-+..| +-+|....
T Consensus 67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred CceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence 78999999999999999 5899999999843332211 111112455889999866 4455554444 55665544
No 478
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=80.56 E-value=44 Score=36.66 Aligned_cols=55 Identities=15% Similarity=-0.006 Sum_probs=38.0
Q ss_pred CCeEEEEEccCCCEEEEEc-CCcEEEEECCCCce--eEEec---CCCCCCCeEEEEEeeCC
Q 004924 571 TIVNHIQFHPDQIHLLSIH-EGQIDVYEAPTLNH--TSQLV---PDKMDLPITYATYSCDG 625 (723)
Q Consensus 571 ~~v~~l~~spdg~~l~~s~-dg~I~vwd~~~~~~--~~~~~---~~~h~~~v~~l~~spdg 625 (723)
...+.|+|.|||+++++-. .|.|++++..++.. +..+. ..........++++|+-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 4678999999999888865 69999998755432 21111 11125668899999874
No 479
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=80.03 E-value=13 Score=35.01 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=28.9
Q ss_pred eEEEEEecCC-----CCEEEEEECCCcEEEEecCCC-ceeeec
Q 004924 668 PLVIAAHPLE-----PNRIALGLTNGRVHVIEPLES-EVEWGK 704 (723)
Q Consensus 668 ~~~v~~sp~d-----~~~las~s~Dg~v~iWd~~~~-~~~w~~ 704 (723)
+.+++|||.. +-+||+.+.+|.|.||..... ...|..
T Consensus 88 vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~~~~W~~ 130 (173)
T PF12657_consen 88 VVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNPQGEWNR 130 (173)
T ss_pred EEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCccccEee
Confidence 5599999921 237999999999999998865 556765
No 480
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=80.02 E-value=3.4 Score=26.34 Aligned_cols=26 Identities=19% Similarity=0.477 Sum_probs=23.0
Q ss_pred CEEEEEECCCcEEEEecCCCceeeec
Q 004924 679 NRIALGLTNGRVHVIEPLESEVEWGK 704 (723)
Q Consensus 679 ~~las~s~Dg~v~iWd~~~~~~~w~~ 704 (723)
..+..++.+|.+..+|..+|+.+|..
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36778889999999999999999974
No 481
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes. This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.
Probab=79.88 E-value=2.5 Score=33.83 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=31.6
Q ss_pred chHHHHHHHHhcCCCcccchHHHHHHHHHHhhhhhhHHHHHHHhhhccccc
Q 004924 109 NSALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFF 159 (723)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~evirlI~q~L~e~G~~~s~~~L~~Es~i~~ 159 (723)
+++|+..++. .+-.-++.||-.||+-+||+.|+..++.|+|..-
T Consensus 6 ne~lkk~l~t-------~eg~Li~eLIrEyLef~~l~~TlsVf~~Es~~~~ 49 (81)
T PF09398_consen 6 NENLKKFLST-------KEGRLINELIREYLEFNNLDYTLSVFQPESGQPE 49 (81)
T ss_dssp -HHHHHHHTS-------HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHT-TT
T ss_pred chHHHHHhcC-------chhHHHHHHHHHHHHHcCCccHHHHHhhccCCCC
Confidence 3444555544 2334578899999999999999999999999853
No 482
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=79.70 E-value=59 Score=37.35 Aligned_cols=147 Identities=11% Similarity=0.146 Sum_probs=74.1
Q ss_pred EEEcCCCCEEEEEeCC----CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCC-----cEE
Q 004924 525 LAYSLSLNVLVSSGAD----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG-----QID 594 (723)
Q Consensus 525 l~~spdg~~l~s~s~d----g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg-----~I~ 594 (723)
+.|-.|..+.+++... ..+++|.-.+. +.......+ +.-..++|-|.|..+++ +.|| .|.
T Consensus 207 i~wrgD~~y~~v~r~Ee~prra~rvysreg~-------lds~sep~~---g~e~~LSWkpqgS~~ati~td~~~~S~~Vi 276 (1243)
T COG5290 207 IFWRGDTEYNLVGRSEERPRRAFRVYSREGQ-------LDSASEPVT---GMEHQLSWKPQGSKYATIGTDGCSTSESVI 276 (1243)
T ss_pred EEEccCcceeeecchhcccccceeeeccccc-------cccccCCcc---cchhccccccCCceeeeeccCCCCCcceEE
Confidence 4565566665555432 34677764431 111111111 44456899999999998 5444 355
Q ss_pred EEECC---CCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEE
Q 004924 595 VYEAP---TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 671 (723)
Q Consensus 595 vwd~~---~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v 671 (723)
.+.-+ .|+.-... +....+...+|.-....++.+ ..+.+.+|-..+.. +-++...+++ .+. -+
T Consensus 277 FfErNGLrHGef~lr~---~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyh--WYLK~e~~ip------~~s--~v 342 (1243)
T COG5290 277 FFERNGLRHGEFDLRV---GCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYH--WYLKVERQIP------GIS--YV 342 (1243)
T ss_pred EEccCCcccCCccccC---CchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceE--EEEEEeecCC------Ccc--ee
Confidence 55432 22221111 113445566776555444433 45779999877654 2222221111 122 68
Q ss_pred EEecCCCCEEEEEECCCcEEEEecC
Q 004924 672 AAHPLEPNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 672 ~~sp~d~~~las~s~Dg~v~iWd~~ 696 (723)
.|||...+.+...+ .+.|..-.+.
T Consensus 343 kwhpe~~nTl~f~d-~~~I~~V~f~ 366 (1243)
T COG5290 343 KWHPEEKNTLLFRD-GERILRVFFS 366 (1243)
T ss_pred eeccccCcEEEEec-CCeEEEEEee
Confidence 89995545444433 3444444443
No 483
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=79.40 E-value=95 Score=37.63 Aligned_cols=112 Identities=17% Similarity=0.087 Sum_probs=60.9
Q ss_pred CCCCCeEEEEEeCCEEEEEeCCcEEEEEcCCC-cEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCC-cEEE
Q 004924 437 DPKDSISCFALRGSHLFSASGGKISIFSLETF-QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKA 513 (723)
Q Consensus 437 ~h~~~V~~v~~s~~~l~s~sdg~I~vwd~~~~-~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~-~~~~ 513 (723)
..+++|..++=-..+|+++....|.+|+++.. ..+.. .--.-.+......--. +|+.|.--..|.+...... ..+.
T Consensus 1095 E~KGtVsavceV~G~l~~~~GqKI~v~~l~r~~~ligV-aFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rls 1173 (1366)
T KOG1896|consen 1095 EQKGTVSAVCEVRGHLLSSQGQKIIVRKLDRDSELIGV-AFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLS 1173 (1366)
T ss_pred hcccceEEEEEeccEEEEccCcEEEEEEeccCCcceee-EEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEE
Confidence 46788887776677888888889999999443 22211 0001111111111112 4455554455555443321 1222
Q ss_pred EEcC--cCCcEEEEEEcCCCC--EEEEEeCCCcEEEEeCC
Q 004924 514 KLKG--HQNRITCLAYSLSLN--VLVSSGADAQLCVWDAV 549 (723)
Q Consensus 514 ~l~~--~~~~i~~l~~spdg~--~l~s~s~dg~I~vwd~~ 549 (723)
.+.. ..-.+.++.|--||. .++++..|+.|++|-..
T Consensus 1174 L~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1174 LLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred EeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 2211 223567777877775 47788889999887543
No 484
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=77.96 E-value=80 Score=31.71 Aligned_cols=187 Identities=13% Similarity=0.044 Sum_probs=107.0
Q ss_pred CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEE-EE--cCcCCcEE
Q 004924 449 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA-KL--KGHQNRIT 523 (723)
Q Consensus 449 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~-~l--~~~~~~i~ 523 (723)
|..-+++. .|.|--.|..+|+....--+....-..+...||| .-++-+.. .|.-.|.++.+..+ .+ +.-.....
T Consensus 73 G~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nle 151 (353)
T COG4257 73 GAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLE 151 (353)
T ss_pred CceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccccCCCccc
Confidence 33444444 5566666777777665544555555677788888 33332222 55556655544321 11 21235677
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCc
Q 004924 524 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN 602 (723)
Q Consensus 524 ~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~ 602 (723)
...|.+.|+.-.++... .---.|-.. ..+..+..... .....++..|+|..-+++ .++.|-..|..++.
T Consensus 152 t~vfD~~G~lWFt~q~G-~yGrLdPa~------~~i~vfpaPqG---~gpyGi~atpdGsvwyaslagnaiaridp~~~~ 221 (353)
T COG4257 152 TAVFDPWGNLWFTGQIG-AYGRLDPAR------NVISVFPAPQG---GGPYGICATPDGSVWYASLAGNAIARIDPFAGH 221 (353)
T ss_pred ceeeCCCccEEEeeccc-cceecCccc------CceeeeccCCC---CCCcceEECCCCcEEEEeccccceEEcccccCC
Confidence 88899999887777532 110111111 11121111111 456789999999988886 67778888877764
Q ss_pred eeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCc
Q 004924 603 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 646 (723)
Q Consensus 603 ~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~ 646 (723)
....-.+......-..+--+|.|+.-++....+.++-||-.+..
T Consensus 222 aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 222 AEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred cceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence 32222221112334445556888888887778888888876554
No 485
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=77.33 E-value=9.3 Score=25.77 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=24.2
Q ss_pred cCCCEEEEE--cCCcEEEEECCCCceeEEecC
Q 004924 580 PDQIHLLSI--HEGQIDVYEAPTLNHTSQLVP 609 (723)
Q Consensus 580 pdg~~l~~s--~dg~I~vwd~~~~~~~~~~~~ 609 (723)
|++++++++ .+++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 577877774 678999999999988888765
No 486
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=76.91 E-value=7.3 Score=41.28 Aligned_cols=197 Identities=13% Similarity=0.130 Sum_probs=0.0
Q ss_pred CCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeE-EEEEccCCCEEE
Q 004924 508 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN-HIQFHPDQIHLL 586 (723)
Q Consensus 508 ~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~-~l~~spdg~~l~ 586 (723)
.++.+..+......+..+-..|||+.+..-+. ..+.++++.+......+.+..-+.... ..|+ .+..-..|.-++
T Consensus 209 q~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~---~~Vte~l~lL~Gg~SLL 284 (733)
T COG4590 209 QQEIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSR---HQVTEQLYLLSGGFSLL 284 (733)
T ss_pred hhhhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchH---HHHHHHHHHHhCceeEE
Q ss_pred E-EcCCcEEEE------ECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCC
Q 004924 587 S-IHEGQIDVY------EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP 659 (723)
Q Consensus 587 ~-s~dg~I~vw------d~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~ 659 (723)
+ ..||.|.-| +-.....++.++.. ..++..+.-..+.+-+++-+.+|++.++.....+.+-.-..
T Consensus 285 v~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~--pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~------ 356 (733)
T COG4590 285 VVHEDGLVSQWFDVRRDGQPHLNHIRNFKLA--PAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA------ 356 (733)
T ss_pred EEcCCCceeeeeeeecCCCCcceeeeccccC--cccceeeccccccceEEEEcCCCceeeeecccCcceehhhh------
Q ss_pred CCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCC----------ceeeecCCCCccccccccCCCCCCC
Q 004924 660 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES----------EVEWGKLPFTDSREFSTTFGSTALE 723 (723)
Q Consensus 660 g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~----------~~~w~~~~~~~~g~~~~~~~~~~~~ 723 (723)
-.... -+++|| +++++++- +.|.++++.++++ ++.|...-+.+.=+-.++++..-.|
T Consensus 357 ---~~~~~--~~~~Sp-~~~~Ll~e-~~gki~~~~l~Nr~PeiswsaLWqkvWYEsYpePayVWQStaAt~dfe 423 (733)
T COG4590 357 ---YQAPQ--LVAMSP-NQAYLLSE-DQGKIRLAQLENRNPEISWSALWQKVWYESYPEPAYVWQSTAATDDFE 423 (733)
T ss_pred ---hcCcc--eeeeCc-ccchheee-cCCceEEEEecCCCCCccHHHhhhhhhhhcCCCchheeeccccccccc
No 487
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=76.56 E-value=70 Score=34.92 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=25.6
Q ss_pred CCeEEEEEeeCCcEEEEEeCCCcEEEEECCCC
Q 004924 614 LPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 645 (723)
Q Consensus 614 ~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~ 645 (723)
..|.+++..+..+.+++.+.+|.|.+|++..+
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 34889999988899999999999999999853
No 488
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.55 E-value=1.6e+02 Score=35.13 Aligned_cols=245 Identities=12% Similarity=-0.019 Sum_probs=110.6
Q ss_pred EEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEeC
Q 004924 380 LIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASG 457 (723)
Q Consensus 380 l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~sd 457 (723)
.++..-|+.+..|+.||.+.+|.+.....+.+... .. ++-.. ... -++.+|..+... -+.+.+-+|
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~-~~-------~~~~~-~~~---~~kk~i~~l~~~~~~~~ll~l~d 87 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL-VT-------ETVKF-EKE---FSKKPINKLLVCASLELLLILSD 87 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhh-hc-------chhHH-hhh---hccchhHHHhhcchhcchheecC
Confidence 34445678899999999999999876544222221 00 00000 000 134566655554 445555568
Q ss_pred CcEEEEEcCCCcEEEEEeCCCCCeEEEE-----EcCC--CeEEEEE-CCCcE-EEEeCCCCcEEEEEcCcCCcEEEEEEc
Q 004924 458 GKISIFSLETFQTLATFANPPPIATYFI-----LLPQ--DLFAFGF-DDSSI-LVHCPCTKKTKAKLKGHQNRITCLAYS 528 (723)
Q Consensus 458 g~I~vwd~~~~~~~~~~~~~~~~v~~l~-----~~p~--~~l~sgs-~dg~I-~iwd~~~~~~~~~l~~~~~~i~~l~~s 528 (723)
+.|.++++.+.+..... .+-.+++..+ ++.+ -+.++.+ ....+ ..|+-+.+..+..--+........+|
T Consensus 88 sqi~~~~l~~~~~~~~~-~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~- 165 (877)
T KOG2063|consen 88 SQIAVHKLPELEPVPSG-TRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAW- 165 (877)
T ss_pred CcceeeecCcccccccc-cccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhcc-
Confidence 88888887665442111 1111111111 1112 1222222 22222 23443333322221111122222222
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeE--E
Q 004924 529 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS--Q 606 (723)
Q Consensus 529 pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~--~ 606 (723)
.|..+.++-.+....+|...++...... +..+.. . ..-..++-.+++..++.+.|+...+-|. .|.... +
T Consensus 166 -~~~~~c~~~~~~~~ii~~~~~~~~~~~~-~s~~~~-~----s~~P~I~~l~~~~~ll~~kd~~gv~vd~-~G~~~~~~~ 237 (877)
T KOG2063|consen 166 -CGHIVCLGLKKSYYIINNTSKGVGPNLF-PSSMDN-E----SRKPLIKSLSDQSELLLGKDNIGVVVDL-NGIIAQRGT 237 (877)
T ss_pred -cceeEEEeecceeEEEecCCCcccccee-eecccc-c----cCCCeEEEecCCceEEEccCceEEEEec-CCcccCCCc
Confidence 2333333333233333333332110000 110110 0 1222455556666777788777777775 344310 0
Q ss_pred ecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEee
Q 004924 607 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 652 (723)
Q Consensus 607 ~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~ 652 (723)
+. ......++. -+..|+++-+ ++.|.||+..++++++++.
T Consensus 238 l~---ws~~P~~v~--~~~PYlIa~~-~~~veI~s~~~~qlvQSI~ 277 (877)
T KOG2063|consen 238 LV---WSEVPLSVV--VESPYLIALL-DRSVEIRSKLDGQLVQSIT 277 (877)
T ss_pred eE---ecccchhhc--ccCceEEEEc-cccEEEEeccCHHHhhccc
Confidence 00 011111222 2456777665 4599999999998888773
No 489
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.01 E-value=2.1e+02 Score=35.16 Aligned_cols=75 Identities=11% Similarity=0.056 Sum_probs=48.1
Q ss_pred CCCCCeEEEEEcCCCeEEEEECCCcEEE--EeCCCC---c-E----------------EEEEc-CcCCcEEEEEEcCCCC
Q 004924 476 NPPPIATYFILLPQDLFAFGFDDSSILV--HCPCTK---K-T----------------KAKLK-GHQNRITCLAYSLSLN 532 (723)
Q Consensus 476 ~~~~~v~~l~~~p~~~l~sgs~dg~I~i--wd~~~~---~-~----------------~~~l~-~~~~~i~~l~~spdg~ 532 (723)
..+..|.|+....+|.++.+|.||.|+- |....| + + +-.+. .+..+|..++....-.
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 3456788888777776666666775542 222221 1 1 01122 4566888888887777
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 004924 533 VLVSSGADAQLCVWDAVG 550 (723)
Q Consensus 533 ~l~s~s~dg~I~vwd~~~ 550 (723)
.+.+-+..|+|.+||+..
T Consensus 256 IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeeeccCceEEEEEccC
Confidence 888888888888888876
No 490
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=74.69 E-value=81 Score=31.38 Aligned_cols=143 Identities=15% Similarity=0.104 Sum_probs=71.2
Q ss_pred EEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE--cC--CcEEEEECCC--Cce-eEEecC-CCCCCC
Q 004924 544 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE--GQIDVYEAPT--LNH-TSQLVP-DKMDLP 615 (723)
Q Consensus 544 ~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s--~d--g~I~vwd~~~--~~~-~~~~~~-~~h~~~ 615 (723)
.+||+.+++. .++. +. .. .-..+-.+-|||+++.+| .+ ..+++++..+ +.+ ...... -.....
T Consensus 49 ~~yD~~tn~~---rpl~-v~--td---~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RW 119 (243)
T PF07250_consen 49 VEYDPNTNTF---RPLT-VQ--TD---TFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRW 119 (243)
T ss_pred EEEecCCCcE---Eecc-CC--CC---CcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCc
Confidence 4788888543 2222 11 11 223334577999999984 33 3688888654 111 111000 011233
Q ss_pred eEEEEEeeCCcEEEEEeCCC-cEEEEECCC-CcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEE
Q 004924 616 ITYATYSCDGKCIYVSCKSG-HVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 693 (723)
Q Consensus 616 v~~l~~spdg~~l~sgs~dg-~I~iwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW 693 (723)
--++..-|||+.|+.|+.+. +.-+|.-.. ......+........ ......+. -+...| +|++++.+..+ -.||
T Consensus 120 YpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~-~~~~nlYP-~~~llP-dG~lFi~an~~--s~i~ 194 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSD-TLPNNLYP-FVHLLP-DGNLFIFANRG--SIIY 194 (243)
T ss_pred cccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhc-cCccccCc-eEEEcC-CCCEEEEEcCC--cEEE
Confidence 33455558999999888774 344454422 111111110000000 00112232 344567 89999888765 3577
Q ss_pred ecCCCce
Q 004924 694 EPLESEV 700 (723)
Q Consensus 694 d~~~~~~ 700 (723)
|..+.+.
T Consensus 195 d~~~n~v 201 (243)
T PF07250_consen 195 DYKTNTV 201 (243)
T ss_pred eCCCCeE
Confidence 8888754
No 491
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=74.42 E-value=2.5e+02 Score=35.67 Aligned_cols=156 Identities=10% Similarity=0.113 Sum_probs=81.1
Q ss_pred EEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcc--cccccceeee-
Q 004924 342 CAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ--SLEEENVNME- 418 (723)
Q Consensus 342 ~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~--~~g~~~~~~~- 418 (723)
....++.|.|=. ........+|+..|...++.|.-+++|.++=. .|+.+..||.....+ +.+.....++
T Consensus 336 l~~~~~~i~~~~------~~~~~~~~~PgkaH~A~LTgv~~~~~ge~lRl--Hd~~LY~~d~~~~~Wk~~~~~~d~~~S~ 407 (1774)
T PF11725_consen 336 LERDDGHIHIDT------GVNRKALNLPGKAHIAHLTGVHTDPDGEQLRL--HDDRLYQFDPNTARWKPPPDKSDTPFSS 407 (1774)
T ss_pred eeccCCcEEecc------CCCccccCCCcHHHHHHhhccccCCCCCeEEe--ecCceeeeccccceecCCCCcccchhhh
Confidence 334455555542 22333445777778888999988999886543 366777777664443 1111111111
Q ss_pred ------eEEEecCCCeeeeeccCCC-CC---CCeEEEEEe--CCE-EEEEeC-CcEEEEEcCCC------cEEEE--EeC
Q 004924 419 ------SQLYQPSSKLVMTNDIAAD-PK---DSISCFALR--GSH-LFSASG-GKISIFSLETF------QTLAT--FAN 476 (723)
Q Consensus 419 ------~~~~~~~~~~~~~~~~~~~-h~---~~V~~v~~s--~~~-l~s~sd-g~I~vwd~~~~------~~~~~--~~~ 476 (723)
-.+|- .++..+..+..+. +. ..+.+...+ |.. +.++.| .++.+|++... ++... +.+
T Consensus 408 Ls~qgdG~lYA-k~~~~l~nLSs~~~~~~~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~d 486 (1774)
T PF11725_consen 408 LSRQGDGKLYA-KDDDTLVNLSSGQMSEAEVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLAD 486 (1774)
T ss_pred hcccCCCceEe-cCCCceeecCCCCcchhhhhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccC
Confidence 13344 3333332222110 11 123333333 444 444445 46699988653 11122 223
Q ss_pred CCCCeEEEEEcCCCeEEEEECCCcEEEEeCC
Q 004924 477 PPPIATYFILLPQDLFAFGFDDSSILVHCPC 507 (723)
Q Consensus 477 ~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~ 507 (723)
......++.++++ .|+++..+|.++.-++.
T Consensus 487 G~a~A~~VgLs~d-rLFvADseGkLYsa~l~ 516 (1774)
T PF11725_consen 487 GKAQAQSVGLSND-RLFVADSEGKLYSADLP 516 (1774)
T ss_pred CchhhhheeecCC-eEEEEeCCCCEEecccc
Confidence 3335667777665 67778888888776654
No 492
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=74.33 E-value=1e+02 Score=31.24 Aligned_cols=150 Identities=12% Similarity=0.068 Sum_probs=85.7
Q ss_pred CCCCeEEEEEeCCEEEEEe-CCcEEEEEcCCCcEEEEEeC--CCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCc---
Q 004924 438 PKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK--- 510 (723)
Q Consensus 438 h~~~V~~v~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~--~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~--- 510 (723)
..+-+..+.+++++...+. +.-++|.|+.+......... ..+-..+ |.-.| +..++..|.-+-+.|+.+.+
T Consensus 85 ~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 85 ARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCCce
Confidence 3455667888888888888 78899999987544333221 1122223 33345 66666655566677776532
Q ss_pred EEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcC
Q 004924 511 TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE 590 (723)
Q Consensus 511 ~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~d 590 (723)
....+......-..++.+ |++...+..|+-+.+.|+..... ...+.....+ ..+.++..+++-.+++....
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~s--Pvli~~~n~g-----~g~~sv~vsdnr~y~vvy~e 233 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHS--PVLIGSYNTG-----PGTYSVSVSDNRAYLVVYDE 233 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCC--CeEEEEEecC-----CceEEEEecCCeeEEEEccc
Confidence 223333334444555554 67778888999999999987311 0111111111 36778888877655554332
Q ss_pred CcEEEEECC
Q 004924 591 GQIDVYEAP 599 (723)
Q Consensus 591 g~I~vwd~~ 599 (723)
.+.+-|..
T Consensus 234 -gvlivd~s 241 (370)
T COG5276 234 -GVLIVDVS 241 (370)
T ss_pred -ceEEEecC
Confidence 33344443
No 493
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=73.72 E-value=1.3e+02 Score=32.09 Aligned_cols=200 Identities=13% Similarity=0.064 Sum_probs=106.4
Q ss_pred CCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCE--EEEEe--C--
Q 004924 384 HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSH--LFSAS--G-- 457 (723)
Q Consensus 384 pdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~--l~s~s--d-- 457 (723)
|...+++...+++-+.+||++.. ....+ ..|.+-. -+-...+.+.|+. |+.++ +
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk------~lq~~-------~~Gr~NN-------VDvrygf~l~g~~vDlavas~R~~g 125 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGK------ELQSL-------PVGRPNN-------VDVRYGFPLNGKTVDLAVASDRSDG 125 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-------EEEEE--------SS-EEE-------EEEEEEEEETTEEEEEEEEEE-CCC
T ss_pred cccceEEEEeCCCCEEEEcCCCc------EEEee-------cCCCcce-------eeeecceecCCceEEEEEEecCcCC
Confidence 34457777788889999997643 22211 0111000 0001112222332 45555 2
Q ss_pred -CcEEEEEcC--CCcEEEEEeC-------CCCCeEEEEE--cC-CC--eEEEEECCCcEEEEeCC---CC----cEEEEE
Q 004924 458 -GKISIFSLE--TFQTLATFAN-------PPPIATYFIL--LP-QD--LFAFGFDDSSILVHCPC---TK----KTKAKL 515 (723)
Q Consensus 458 -g~I~vwd~~--~~~~~~~~~~-------~~~~v~~l~~--~p-~~--~l~sgs~dg~I~iwd~~---~~----~~~~~l 515 (723)
.+|++|.+. ++. +..+.. ....+..+|+ ++ +| +.++...+|.+..|-+. .| +.++.|
T Consensus 126 ~n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f 204 (381)
T PF02333_consen 126 RNSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF 204 (381)
T ss_dssp T-EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE
T ss_pred CCeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe
Confidence 369999775 343 333321 1123555655 44 45 67778889988877653 33 456777
Q ss_pred cCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEc--cCC-CEEEE-E-cC
Q 004924 516 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH--PDQ-IHLLS-I-HE 590 (723)
Q Consensus 516 ~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~s--pdg-~~l~~-s-~d 590 (723)
.. .+.+..++.......|..+-++.-|.-|+.+.........+......+.. ..|..+++- +++ .||++ + .+
T Consensus 205 ~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~--aDvEGlaly~~~~g~gYLivSsQG~ 281 (381)
T PF02333_consen 205 KV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLV--ADVEGLALYYGSDGKGYLIVSSQGD 281 (381)
T ss_dssp E--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB---S-EEEEEEEE-CCC-EEEEEEEGGG
T ss_pred cC-CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccc--cCccceEEEecCCCCeEEEEEcCCC
Confidence 64 45788889998888999999998888888764322122222211122221 567777774 343 46665 5 67
Q ss_pred CcEEEEECCC-CceeEEe
Q 004924 591 GQIDVYEAPT-LNHTSQL 607 (723)
Q Consensus 591 g~I~vwd~~~-~~~~~~~ 607 (723)
++..||+.+. ...+..|
T Consensus 282 ~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 282 NSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp TEEEEEESSTT--EEEEE
T ss_pred CeEEEEecCCCCcccceE
Confidence 8999999864 3334444
No 494
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=73.61 E-value=3.9 Score=37.08 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=36.2
Q ss_pred chhhHHhhhcCChHHHHHHHhhccccccCcchhHHHHHHHHHHHHHHHhhcC
Q 004924 161 INYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQRQKYLEAVDRQQ 212 (723)
Q Consensus 161 ~~~l~~~i~~G~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~q~~le~l~~~e 212 (723)
...++++|++|+++.|++.+....+.-...-+.-.|. |+.|+|+|++..+.
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~-L~~q~fiell~~~~ 55 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFE-LRCQQFIELLREGD 55 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHH-HHHHHHHHHHHHHh
Confidence 4578899999999999999976522111111233455 99999999999763
No 495
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=73.41 E-value=1.6e+02 Score=32.87 Aligned_cols=271 Identities=13% Similarity=0.108 Sum_probs=125.2
Q ss_pred CCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCEE
Q 004924 374 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 452 (723)
Q Consensus 374 ~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l 452 (723)
...|..+.+...|. +-.|+.||-.+ |+..+++.++.... ....+|..+.-+ +..+
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dGL~~----------------------fd~~~gkalql~s~-~~dk~I~al~~d~qg~L 219 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDGLSY----------------------FDAGRGKALQLASP-PLDKAINALIADVQGRL 219 (671)
T ss_pred CccceeeeeeccCc-EEEecCCcceE----------------------EccccceEEEcCCC-cchhhHHHHHHHhcCcE
Confidence 46778888888886 45566665442 33444444432221 123566666666 7778
Q ss_pred EEEeCCcEEEEEcCCCcEEEEEe-CCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEcCc--CCcEEEEEEcC
Q 004924 453 FSASGGKISIFSLETFQTLATFA-NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGH--QNRITCLAYSL 529 (723)
Q Consensus 453 ~s~sdg~I~vwd~~~~~~~~~~~-~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~--~~~i~~l~~sp 529 (723)
..|++.-|.+.+.+..+...-.. -....|..+.-..+|.+-.|+.+|..+.--.+.+-.....+.| .+.|+++..+.
T Consensus 220 WVGTdqGv~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~ 299 (671)
T COG3292 220 WVGTDQGVYLQEAEGWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDT 299 (671)
T ss_pred EEEeccceEEEchhhccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeecc
Confidence 88887778887766422111111 2233444444444446667777665543332222211122222 23455555555
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccC--CCEEEE-EcCCcEEEEECCCCceeEE
Q 004924 530 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLS-IHEGQIDVYEAPTLNHTSQ 606 (723)
Q Consensus 530 dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spd--g~~l~~-s~dg~I~vwd~~~~~~~~~ 606 (723)
+|. +-+++.+|.+++-+-. . +....+. -..+ ..+...+..|. +..+-- .+.|.+.+-+-.+|..+..
T Consensus 300 dGs-LWv~t~~giv~~~~a~-w--~~ma~in-~~dG-----~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~s 369 (671)
T COG3292 300 DGS-LWVGTYGGIVRYLTAD-W--KRMAVIN-DSDG-----GVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRS 369 (671)
T ss_pred CCC-EeeeccCceEEEecch-h--hheeeee-cCCC-----chhhhhccCchhcccceeeccccceEEEecCCCCcEEEE
Confidence 664 4455555554432221 1 0000111 0001 11112222221 111111 1223344445555655554
Q ss_pred ecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCC-CcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEE
Q 004924 607 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 685 (723)
Q Consensus 607 ~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 685 (723)
... .....|+.+++..+|. +-.|+...-+.-|+.++ +........ --...+. ++.-.| +++ |..|+
T Consensus 370 v~q-~Rg~nit~~~~d~~g~-lWlgs~q~GLsrl~n~n~~avlde~ag-------l~ss~V~--aived~-dns-LWIGT 436 (671)
T COG3292 370 VHQ-LRGMNITTTLEDSRGR-LWLGSMQNGLSRLDNKNEWAVLDEDAG-------LPSSEVS--AIVEDP-DNS-LWIGT 436 (671)
T ss_pred eee-ccccccchhhhccCCc-EEEEecccchhhhccCCcccccccccC-------Cccccee--eeeecC-CCC-EEEec
Confidence 322 1245567777766554 44455543355566665 322222211 1122333 566666 555 77777
Q ss_pred CCCcEE
Q 004924 686 TNGRVH 691 (723)
Q Consensus 686 ~Dg~v~ 691 (723)
.+|.++
T Consensus 437 s~Glvk 442 (671)
T COG3292 437 SGGLVK 442 (671)
T ss_pred cCCeEe
Confidence 777554
No 496
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=73.27 E-value=73 Score=31.73 Aligned_cols=144 Identities=17% Similarity=0.213 Sum_probs=76.2
Q ss_pred EEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEEC-C--CcEEEEeCCC----CcEEE---EEcCcCCcEEEEEEcC
Q 004924 461 SIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-D--SSILVHCPCT----KKTKA---KLKGHQNRITCLAYSL 529 (723)
Q Consensus 461 ~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~-d--g~I~iwd~~~----~~~~~---~l~~~~~~i~~l~~sp 529 (723)
.+||+.+++....-...+..+.+-.+.+|| .+.+|+. + ..+++++..+ ..... .+. ....-.....-|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceECC
Confidence 478888775533222333344455677899 8877764 2 2578887654 11111 111 122333455678
Q ss_pred CCCEEEEEeCCC-cEEEEeCCCC--ceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEE
Q 004924 530 SLNVLVSSGADA-QLCVWDAVGW--KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQ 606 (723)
Q Consensus 530 dg~~l~s~s~dg-~I~vwd~~~~--~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~ 606 (723)
||+.++.|+.+. +..+|.-... .......+........ ..---.+...|+|+.++.+..+ -.|||..+.+.++.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~--~nlYP~~~llPdG~lFi~an~~-s~i~d~~~n~v~~~ 204 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLP--NNLYPFVHLLPDGNLFIFANRG-SIIYDYKTNTVVRT 204 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCc--cccCceEEEcCCCCEEEEEcCC-cEEEeCCCCeEEee
Confidence 999999988764 3445544221 0000000110000000 0122356778999999887554 44679888877666
Q ss_pred ec
Q 004924 607 LV 608 (723)
Q Consensus 607 ~~ 608 (723)
+.
T Consensus 205 lP 206 (243)
T PF07250_consen 205 LP 206 (243)
T ss_pred CC
Confidence 64
No 497
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=73.22 E-value=15 Score=34.53 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=25.3
Q ss_pred CcEEEEEEcCCC------CEEEEEeCCCcEEEEeCCC
Q 004924 520 NRITCLAYSLSL------NVLVSSGADAQLCVWDAVG 550 (723)
Q Consensus 520 ~~i~~l~~spdg------~~l~s~s~dg~I~vwd~~~ 550 (723)
..+..++|||.| -.|++.+.++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999955 2588889999999997654
No 498
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=71.41 E-value=11 Score=25.02 Aligned_cols=29 Identities=10% Similarity=0.236 Sum_probs=20.5
Q ss_pred CCCceEEEEEeCCCCEEEEEEC-C--CcEEEE
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQ-T--ATHKLW 401 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~-d--g~i~iW 401 (723)
....-...+|||||++|+-++. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3556788999999999888776 3 555554
No 499
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=71.12 E-value=1.8e+02 Score=32.58 Aligned_cols=229 Identities=12% Similarity=0.115 Sum_probs=115.9
Q ss_pred CCEEEEEe-CCcEEEEEcCCCc---EEEEEeCC-CCCeEEEEEcCCC--eEEEEECCC--cEEEEeCCCCcEEEEEcCcC
Q 004924 449 GSHLFSAS-GGKISIFSLETFQ---TLATFANP-PPIATYFILLPQD--LFAFGFDDS--SILVHCPCTKKTKAKLKGHQ 519 (723)
Q Consensus 449 ~~~l~s~s-dg~I~vwd~~~~~---~~~~~~~~-~~~v~~l~~~p~~--~l~sgs~dg--~I~iwd~~~~~~~~~l~~~~ 519 (723)
+..++.+. +|.+....+.... .+..+ +. ....+++++..+| .++.|+.-| .+.-|....-+.+..+. .-
T Consensus 222 ~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N~ 299 (504)
T PF10433_consen 222 GDRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-NW 299 (504)
T ss_dssp SSEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE----
T ss_pred CCEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-Cc
Confidence 55666666 8988887765433 12222 22 4456678888887 888888765 44444533334445554 44
Q ss_pred CcEEEEEEcCC---C-C------EEEEEe---CCCcEEEEeCCCCceee--ceeeeeeecCCCCCCCCeEEEEEcc-CCC
Q 004924 520 NRITCLAYSLS---L-N------VLVSSG---ADAQLCVWDAVGWKKLC--SKFLHSFQTGLVPETTIVNHIQFHP-DQI 583 (723)
Q Consensus 520 ~~i~~l~~spd---g-~------~l~s~s---~dg~I~vwd~~~~~~~~--~~~l~~~~~~~~~~~~~v~~l~~sp-dg~ 583 (723)
++|.++++.+. + . .+++++ .+|.+++..- |-... ......++. . ..++.+.... ++.
T Consensus 300 ~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~--Gi~~~~~~~~~~~l~~--v---~~iW~l~~~~~~~~ 372 (504)
T PF10433_consen 300 GPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN--GIGIEGLELASSELPG--V---TGIWTLKLSSSDHS 372 (504)
T ss_dssp -SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE--SBEEE--EEEEEEEST--E---EEEEEE-SSSSSBS
T ss_pred CCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec--cCCceeeeeeccCCCC--c---eEEEEeeecCCCce
Confidence 78888888531 1 1 555554 4678887642 21111 111111111 0 2344444332 256
Q ss_pred EEEEEcCCcEEEEECC---CCceeEEecCCCC---CCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeeccccc
Q 004924 584 HLLSIHEGQIDVYEAP---TLNHTSQLVPDKM---DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA 657 (723)
Q Consensus 584 ~l~~s~dg~I~vwd~~---~~~~~~~~~~~~h---~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~ 657 (723)
+++.+....-+++.+. ..+.+......+- ...+.+..+ . +..++=... ..|++.+...++....+....
T Consensus 373 ~lv~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~-~-~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~-- 447 (504)
T PF10433_consen 373 YLVLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNV-G-DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPA-- 447 (504)
T ss_dssp EEEEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEE-T-TTEEEEEES-SEEEEEESSSTSEEEEEE-TT--
T ss_pred EEEEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEc-C-CCeEEEEec-CeEEEEECCCCeEEEEEeCCC--
Confidence 7777766666666663 2343322211010 112222222 2 444444433 448888888887777664321
Q ss_pred CCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCcee
Q 004924 658 QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 701 (723)
Q Consensus 658 ~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~ 701 (723)
+.. +++.+.+ +.+++.+-.++.+..+.+......
T Consensus 448 -----~~~--I~~a~~~---~~~v~v~~~~~~~~~~~~~~~~~~ 481 (504)
T PF10433_consen 448 -----GSI--IVAASIN---DPQVLVALSGGELVYFELDDNKIS 481 (504)
T ss_dssp -----S-----SEEEES---SSEEEEEE-TTEEEEEEEETTEEE
T ss_pred -----CCe--EEEEEEC---CCEEEEEEeCCcEEEEEEECCcee
Confidence 222 3355554 357777777899999999876654
No 500
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=71.04 E-value=2e+02 Score=33.06 Aligned_cols=164 Identities=12% Similarity=0.186 Sum_probs=86.9
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccC------CCEEEE-Ec-C
Q 004924 519 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD------QIHLLS-IH-E 590 (723)
Q Consensus 519 ~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spd------g~~l~~-s~-d 590 (723)
...|..+.+.++++.+++...+|.|.+||...+...... .+...+. ..+.--.|-++ ..++++ +. +
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~---~l~~~~~---~~v~ys~fv~~~~~~~~~~~ll~v~~~~ 202 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVP---QLKLKSS---INVSYSKFVNDFELENGKDLLLTVSQLS 202 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccc---ccccccc---cceehhhhhcccccccCCceEEEEEEcC
Confidence 567889999999999999999999999999432211111 1112221 11111122222 234444 43 2
Q ss_pred -C--cEEEEECC-CCceeEEecC-CCCCCCeEEEEEee-CCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccC
Q 004924 591 -G--QIDVYEAP-TLNHTSQLVP-DKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISL 664 (723)
Q Consensus 591 -g--~I~vwd~~-~~~~~~~~~~-~~h~~~v~~l~~sp-dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~ 664 (723)
. ..+++.+. ....+..+.. ..+........|.- +|. |+.- .+++|.+|++.+.+...++.....+.... ..
T Consensus 203 ~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~-LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~-~~ 279 (670)
T PF10395_consen 203 NSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGK-LYQL-SKKTISSYSIPNFQIQKTISLPSIIDKES-DD 279 (670)
T ss_pred CCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCE-EEEE-eCCEEEEEEcCCceEEEEEEechhhcccc-cc
Confidence 2 56777771 1222222210 01122333344443 444 3333 67899999999999888887654443221 11
Q ss_pred ccceEEEEEecCCCCEEEEEECCCcEEEEecCC
Q 004924 665 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 665 ~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~ 697 (723)
.+.+.|-..+.+.-+ .+++|++.|+.-
T Consensus 280 -----~vSl~~~s~nRvLLs-~~nkIyLld~~~ 306 (670)
T PF10395_consen 280 -----LVSLKPPSPNRVLLS-VNNKIYLLDLKF 306 (670)
T ss_pred -----ceEeecCCCCeEEEE-cCCEEEEEeehh
Confidence 122222133333333 467899999754
Done!