Query 004924
Match_columns 723
No_of_seqs 785 out of 4343
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 09:57:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004924.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004924hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 5.1E-46 1.7E-50 405.6 41.7 278 373-695 107-409 (410)
2 1nr0_A Actin interacting prote 100.0 2.9E-42 1E-46 395.6 48.3 366 304-700 48-570 (611)
3 1nr0_A Actin interacting prote 100.0 9E-41 3.1E-45 383.3 51.6 342 331-697 24-522 (611)
4 1got_B GT-beta; complex (GTP-b 100.0 7E-40 2.4E-44 347.7 44.3 282 368-694 51-340 (340)
5 3ow8_A WD repeat-containing pr 100.0 5.4E-40 1.9E-44 345.5 43.0 282 372-696 30-320 (321)
6 2ymu_A WD-40 repeat protein; u 100.0 4.4E-39 1.5E-43 366.4 49.4 325 332-694 228-577 (577)
7 4g56_B MGC81050 protein; prote 100.0 3.2E-40 1.1E-44 352.7 37.0 307 341-699 20-345 (357)
8 1got_B GT-beta; complex (GTP-b 100.0 3.9E-39 1.3E-43 341.9 44.1 289 306-641 46-340 (340)
9 3ow8_A WD repeat-containing pr 100.0 2.4E-39 8.1E-44 340.7 40.5 292 305-643 22-320 (321)
10 4gqb_B Methylosome protein 50; 100.0 7.8E-40 2.7E-44 347.4 36.8 288 373-699 29-333 (344)
11 3frx_A Guanine nucleotide-bind 100.0 8.7E-39 3E-43 336.1 42.9 294 368-698 13-318 (319)
12 2ynn_A Coatomer subunit beta'; 100.0 5.7E-39 2E-43 335.0 41.0 281 373-697 12-302 (304)
13 2pbi_B Guanine nucleotide-bind 100.0 1.4E-38 4.7E-43 339.7 42.3 279 373-694 63-354 (354)
14 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.1E-38 3.8E-43 339.1 40.4 300 368-702 11-340 (345)
15 1vyh_C Platelet-activating fac 100.0 7.6E-39 2.6E-43 348.8 39.4 379 124-643 4-410 (410)
16 4ery_A WD repeat-containing pr 100.0 1.1E-37 3.9E-42 326.1 44.9 287 366-696 17-311 (312)
17 3frx_A Guanine nucleotide-bind 100.0 6.6E-38 2.2E-42 329.4 41.0 291 308-645 10-318 (319)
18 3iz6_a 40S ribosomal protein R 100.0 7.1E-39 2.4E-43 345.4 33.7 292 368-699 62-377 (380)
19 2pbi_B Guanine nucleotide-bind 100.0 1.2E-37 4.3E-42 332.3 42.9 291 306-641 55-354 (354)
20 1gxr_A ESG1, transducin-like e 100.0 1.6E-37 5.5E-42 327.1 42.3 315 331-696 15-336 (337)
21 2ymu_A WD-40 repeat protein; u 100.0 5.9E-37 2E-41 348.8 50.0 332 330-700 185-541 (577)
22 3iz6_a 40S ribosomal protein R 100.0 1.5E-38 5.1E-43 342.9 33.5 305 305-646 56-377 (380)
23 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.4E-37 1.2E-41 327.7 41.2 292 331-650 22-341 (345)
24 1r5m_A SIR4-interacting protei 100.0 3.3E-37 1.1E-41 335.6 41.5 321 330-696 50-424 (425)
25 2hes_X YDR267CP; beta-propelle 100.0 1.2E-36 4.1E-41 321.4 40.7 287 373-697 13-328 (330)
26 2xzm_R RACK1; ribosome, transl 100.0 1.5E-36 5.1E-41 322.4 41.6 295 368-699 17-342 (343)
27 2pm9_A Protein WEB1, protein t 100.0 2.2E-38 7.4E-43 344.8 27.3 332 331-698 18-415 (416)
28 1erj_A Transcriptional repress 100.0 1.6E-36 5.3E-41 328.6 41.0 301 373-698 63-390 (393)
29 2xzm_R RACK1; ribosome, transl 100.0 3.6E-36 1.2E-40 319.4 41.5 298 306-645 12-341 (343)
30 4g56_B MGC81050 protein; prote 100.0 5.9E-37 2E-41 327.4 35.2 281 331-646 48-345 (357)
31 4gqb_B Methylosome protein 50; 100.0 1.4E-36 4.7E-41 322.4 37.6 279 331-646 36-333 (344)
32 4aow_A Guanine nucleotide-bind 100.0 1.6E-35 5.5E-40 312.7 44.7 296 367-699 33-339 (340)
33 1pgu_A Actin interacting prote 100.0 2.5E-35 8.5E-40 337.5 49.3 342 331-697 24-614 (615)
34 4aow_A Guanine nucleotide-bind 100.0 1.2E-35 4E-40 313.7 42.5 293 308-646 31-339 (340)
35 2hes_X YDR267CP; beta-propelle 100.0 9.6E-36 3.3E-40 314.4 40.8 302 306-644 5-328 (330)
36 2oaj_A Protein SNI1; WD40 repe 100.0 1.3E-35 4.4E-40 353.6 46.8 351 329-700 21-667 (902)
37 3vl1_A 26S proteasome regulato 100.0 1.3E-36 4.4E-41 331.5 34.8 321 331-697 62-419 (420)
38 2ynn_A Coatomer subunit beta'; 100.0 1.5E-35 5E-40 309.2 38.6 272 331-644 19-302 (304)
39 4ery_A WD repeat-containing pr 100.0 1.5E-34 5.1E-39 302.3 44.0 273 333-643 31-311 (312)
40 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.1E-34 7.2E-39 317.2 46.8 311 333-698 125-443 (445)
41 3dm0_A Maltose-binding peripla 100.0 3.7E-35 1.3E-39 342.0 42.7 293 372-696 380-692 (694)
42 3sfz_A APAF-1, apoptotic pepti 100.0 7.8E-35 2.7E-39 361.5 45.2 321 331-701 621-1038(1249)
43 1erj_A Transcriptional repress 100.0 1.8E-34 6.2E-39 312.4 42.0 280 330-645 69-390 (393)
44 3zwl_B Eukaryotic translation 100.0 1.8E-34 6.1E-39 307.7 41.2 292 361-700 21-349 (369)
45 3sfz_A APAF-1, apoptotic pepti 100.0 4.4E-35 1.5E-39 363.7 41.0 343 331-704 705-1165(1249)
46 3gre_A Serine/threonine-protei 100.0 2.6E-35 8.7E-40 323.4 32.3 320 332-694 34-437 (437)
47 3dm0_A Maltose-binding peripla 100.0 2.1E-34 7E-39 335.7 41.5 289 310-644 377-693 (694)
48 3ei3_B DNA damage-binding prot 100.0 3.6E-34 1.2E-38 308.5 38.4 284 373-697 72-382 (383)
49 1sq9_A Antiviral protein SKI8; 100.0 1.8E-34 6.3E-39 311.8 36.0 296 372-699 14-397 (397)
50 3v7d_B Cell division control p 100.0 2.7E-33 9.2E-38 309.8 44.5 303 334-695 129-461 (464)
51 1k8k_C P40, ARP2/3 complex 41 100.0 5E-34 1.7E-38 305.2 37.3 299 373-702 7-366 (372)
52 4e54_B DNA damage-binding prot 100.0 9.8E-35 3.3E-39 319.0 30.2 290 373-701 118-434 (435)
53 1gxr_A ESG1, transducin-like e 100.0 5.9E-33 2E-37 292.2 42.6 274 331-642 57-335 (337)
54 3k26_A Polycomb protein EED; W 100.0 8E-34 2.7E-38 302.5 36.0 292 372-697 16-366 (366)
55 2j04_B YDR362CP, TAU91; beta p 100.0 2E-35 6.8E-40 329.8 24.3 323 333-697 169-517 (524)
56 3dwl_C Actin-related protein 2 100.0 6.9E-35 2.4E-39 313.2 26.7 242 373-643 10-280 (377)
57 4h5i_A Guanine nucleotide-exch 100.0 1.7E-33 5.8E-38 301.5 37.4 293 374-698 14-344 (365)
58 4a11_B DNA excision repair pro 100.0 2.5E-33 8.5E-38 303.4 38.5 322 333-696 51-404 (408)
59 3odt_A Protein DOA1; ubiquitin 100.0 9.2E-33 3.1E-37 287.7 40.9 279 368-701 14-300 (313)
60 3mkq_A Coatomer beta'-subunit; 100.0 3.2E-33 1.1E-37 331.5 42.3 322 331-698 19-387 (814)
61 3i2n_A WD repeat-containing pr 100.0 7.9E-34 2.7E-38 301.6 32.5 284 373-699 17-355 (357)
62 4aez_A CDC20, WD repeat-contai 100.0 3.5E-33 1.2E-37 303.1 37.7 277 336-651 102-387 (401)
63 1r5m_A SIR4-interacting protei 100.0 2.3E-33 7.8E-38 305.2 36.4 293 373-699 44-363 (425)
64 3odt_A Protein DOA1; ubiquitin 100.0 9.3E-33 3.2E-37 287.6 39.4 291 306-652 9-304 (313)
65 3zwl_B Eukaryotic translation 100.0 1.5E-32 5.2E-37 292.7 41.2 276 333-651 40-353 (369)
66 3ei3_B DNA damage-binding prot 100.0 9.7E-33 3.3E-37 297.3 39.8 283 332-644 80-382 (383)
67 4aez_A CDC20, WD repeat-contai 100.0 7.3E-33 2.5E-37 300.6 38.7 286 373-704 90-387 (401)
68 3vl1_A 26S proteasome regulato 100.0 1.8E-33 6.1E-38 306.6 33.8 285 375-698 57-366 (420)
69 4e54_B DNA damage-binding prot 100.0 4.4E-34 1.5E-38 313.8 28.5 284 333-648 127-434 (435)
70 2pm9_A Protein WEB1, protein t 100.0 5.3E-34 1.8E-38 310.1 27.7 292 373-700 11-340 (416)
71 4a11_B DNA excision repair pro 100.0 5.7E-33 2E-37 300.5 35.1 324 346-701 22-369 (408)
72 1k8k_C P40, ARP2/3 complex 41 100.0 1.2E-32 3.9E-37 294.6 36.8 279 331-646 14-363 (372)
73 3k26_A Polycomb protein EED; W 100.0 3E-33 1E-37 298.0 31.1 294 313-644 16-366 (366)
74 4gga_A P55CDC, cell division c 100.0 3.2E-32 1.1E-36 297.4 39.4 277 332-651 112-402 (420)
75 4gga_A P55CDC, cell division c 100.0 6.5E-32 2.2E-36 295.0 41.2 283 375-700 106-398 (420)
76 2oaj_A Protein SNI1; WD40 repe 100.0 1.2E-32 4.2E-37 327.9 37.9 177 372-553 15-245 (902)
77 3gre_A Serine/threonine-protei 100.0 1.1E-32 3.7E-37 302.5 34.1 309 303-641 50-437 (437)
78 3v7d_B Cell division control p 100.0 1.7E-31 5.9E-36 295.3 44.1 281 368-703 117-427 (464)
79 2pm7_B Protein transport prote 100.0 2.6E-32 8.8E-37 283.6 35.0 246 372-643 7-284 (297)
80 4ggc_A P55CDC, cell division c 100.0 1.6E-31 5.5E-36 279.1 41.2 279 377-699 28-317 (318)
81 3i2n_A WD repeat-containing pr 100.0 1.9E-32 6.4E-37 291.0 32.7 282 331-647 24-356 (357)
82 1sq9_A Antiviral protein SKI8; 100.0 3.8E-32 1.3E-36 293.7 35.5 295 309-646 10-397 (397)
83 3mkq_A Coatomer beta'-subunit; 100.0 5.3E-32 1.8E-36 321.0 39.9 283 373-700 12-305 (814)
84 3dw8_B Serine/threonine-protei 100.0 1.5E-32 5.3E-37 301.7 32.7 304 373-696 27-445 (447)
85 4ggc_A P55CDC, cell division c 100.0 3.7E-31 1.3E-35 276.3 39.3 272 332-646 32-317 (318)
86 1yfq_A Cell cycle arrest prote 100.0 5.6E-32 1.9E-36 285.9 33.4 279 372-694 9-321 (342)
87 2pm7_B Protein transport prote 100.0 1.3E-31 4.5E-36 278.2 35.3 249 437-704 7-291 (297)
88 3dwl_C Actin-related protein 2 100.0 1.1E-32 3.6E-37 296.1 26.0 281 330-642 16-377 (377)
89 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2E-30 6.9E-35 285.3 42.9 280 373-704 117-398 (445)
90 1p22_A F-BOX/WD-repeat protein 100.0 2.7E-31 9.4E-36 291.4 35.7 278 373-706 132-423 (435)
91 4h5i_A Guanine nucleotide-exch 100.0 3E-31 1E-35 284.0 34.5 289 331-645 20-344 (365)
92 3bg1_A Protein SEC13 homolog; 100.0 1.1E-31 3.7E-36 281.5 28.0 248 437-704 11-299 (316)
93 3jrp_A Fusion protein of prote 100.0 2.4E-30 8.1E-35 277.0 35.8 249 372-646 9-289 (379)
94 2j04_A TAU60, YPL007P, hypothe 100.0 6.2E-31 2.1E-35 286.5 30.5 293 330-686 20-350 (588)
95 3bg1_A Protein SEC13 homolog; 100.0 1.5E-31 5.3E-36 280.3 24.9 243 372-643 11-292 (316)
96 3mmy_A MRNA export factor; mRN 100.0 1.2E-30 4.3E-35 277.7 31.9 281 372-697 37-346 (368)
97 1p22_A F-BOX/WD-repeat protein 100.0 1.9E-30 6.5E-35 284.7 33.6 268 333-651 139-421 (435)
98 2aq5_A Coronin-1A; WD40 repeat 100.0 7.2E-31 2.5E-35 284.9 29.6 286 333-648 42-346 (402)
99 2aq5_A Coronin-1A; WD40 repeat 100.0 1.1E-30 3.9E-35 283.3 30.8 288 375-700 35-345 (402)
100 3f3f_A Nucleoporin SEH1; struc 100.0 4.1E-30 1.4E-34 270.9 33.4 253 372-652 9-345 (351)
101 3f3f_A Nucleoporin SEH1; struc 100.0 8.3E-30 2.8E-34 268.5 35.6 250 437-700 9-340 (351)
102 3dw8_B Serine/threonine-protei 100.0 2.5E-30 8.7E-35 284.0 32.8 301 331-643 34-445 (447)
103 1pgu_A Actin interacting prote 100.0 2E-29 6.8E-34 288.4 41.0 293 372-704 16-335 (615)
104 2j04_B YDR362CP, TAU91; beta p 100.0 2.1E-31 7.1E-36 297.3 23.1 293 311-645 203-518 (524)
105 3jrp_A Fusion protein of prote 100.0 6.1E-30 2.1E-34 273.8 33.1 248 437-699 9-289 (379)
106 1yfq_A Cell cycle arrest prote 100.0 3.1E-29 1.1E-33 264.8 33.0 274 332-641 18-321 (342)
107 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.2E-29 1.4E-33 275.3 35.2 301 374-703 4-397 (450)
108 3bws_A Protein LP49; two-domai 100.0 2.1E-28 7.2E-33 267.7 40.0 280 374-697 122-432 (433)
109 2j04_A TAU60, YPL007P, hypothe 100.0 7.7E-30 2.6E-34 278.0 24.4 265 373-696 14-296 (588)
110 3lrv_A PRE-mRNA-splicing facto 100.0 4.2E-29 1.4E-33 264.9 29.6 280 333-698 44-334 (343)
111 3mmy_A MRNA export factor; mRN 100.0 1.2E-28 4.2E-33 262.3 33.0 293 304-643 28-345 (368)
112 1l0q_A Surface layer protein; 100.0 1.8E-27 6.2E-32 256.6 41.8 316 338-700 3-345 (391)
113 3vu4_A KMHSV2; beta-propeller 100.0 1.5E-28 5.2E-33 262.0 31.7 286 372-699 17-338 (355)
114 3vu4_A KMHSV2; beta-propeller 100.0 2.6E-28 8.8E-33 260.2 31.3 267 333-645 27-337 (355)
115 3jro_A Fusion protein of prote 100.0 2.1E-28 7.1E-33 287.1 29.1 248 437-699 7-287 (753)
116 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.9E-27 6.5E-32 262.1 34.5 246 373-643 101-390 (450)
117 2xyi_A Probable histone-bindin 100.0 1.7E-27 5.8E-32 260.8 33.6 250 373-645 127-411 (430)
118 3jro_A Fusion protein of prote 100.0 2.6E-28 8.9E-33 286.3 28.6 248 372-645 7-286 (753)
119 2xyi_A Probable histone-bindin 100.0 1.5E-27 5.1E-32 261.3 31.7 243 437-698 126-411 (430)
120 4gq1_A NUP37; propeller, trans 100.0 1.4E-27 4.6E-32 258.3 30.5 305 374-695 15-387 (393)
121 1l0q_A Surface layer protein; 100.0 4E-26 1.4E-30 246.0 38.6 267 387-704 3-282 (391)
122 3bws_A Protein LP49; two-domai 100.0 6.1E-26 2.1E-30 248.1 36.0 271 330-644 127-432 (433)
123 4gq1_A NUP37; propeller, trans 100.0 5.3E-27 1.8E-31 253.7 26.7 282 334-642 27-387 (393)
124 3lrv_A PRE-mRNA-splicing facto 100.0 5.8E-27 2E-31 248.4 25.9 236 449-704 48-299 (343)
125 1nir_A Nitrite reductase; hemo 100.0 1.8E-25 6.3E-30 251.1 37.4 329 333-705 145-522 (543)
126 2w18_A PALB2, fancn, partner a 100.0 9.5E-26 3.2E-30 231.3 31.1 236 442-695 42-355 (356)
127 2w18_A PALB2, fancn, partner a 99.9 2E-26 6.8E-31 236.3 26.0 186 449-642 145-355 (356)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 8.5E-24 2.9E-28 230.1 30.1 287 333-675 70-407 (415)
129 2ecf_A Dipeptidyl peptidase IV 99.9 2.1E-23 7.3E-28 244.5 33.4 320 331-699 42-461 (741)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.3E-23 4.5E-28 228.6 25.9 277 373-698 61-388 (415)
131 1k32_A Tricorn protease; prote 99.9 9.7E-23 3.3E-27 247.8 33.2 330 330-699 57-463 (1045)
132 1ri6_A Putative isomerase YBHE 99.9 7.3E-22 2.5E-26 207.9 34.7 279 339-647 6-313 (343)
133 1xfd_A DIP, dipeptidyl aminope 99.9 1.4E-22 5E-27 236.7 29.5 321 332-699 23-445 (723)
134 3u4y_A Uncharacterized protein 99.9 2.3E-21 8E-26 203.5 35.8 286 380-703 3-310 (331)
135 3vgz_A Uncharacterized protein 99.9 3.8E-21 1.3E-25 203.6 35.2 271 373-688 39-335 (353)
136 1nir_A Nitrite reductase; hemo 99.9 1.7E-21 5.8E-26 218.8 33.5 276 381-701 144-462 (543)
137 2z3z_A Dipeptidyl aminopeptida 99.9 1.7E-21 5.7E-26 227.2 33.0 314 333-699 33-437 (706)
138 2ecf_A Dipeptidyl peptidase IV 99.9 1.3E-21 4.6E-26 229.2 28.8 292 374-697 36-413 (741)
139 1pby_B Quinohemoprotein amine 99.9 2.3E-21 7.8E-26 203.5 26.8 270 387-706 2-319 (337)
140 1k32_A Tricorn protease; prote 99.9 6.9E-21 2.3E-25 231.6 34.6 230 441-698 246-503 (1045)
141 3u4y_A Uncharacterized protein 99.9 3.1E-20 1.1E-24 195.0 32.9 273 337-647 10-307 (331)
142 1pby_B Quinohemoprotein amine 99.9 1.2E-20 4.1E-25 198.0 29.3 275 338-653 2-319 (337)
143 1ri6_A Putative isomerase YBHE 99.9 3.4E-20 1.2E-24 195.0 30.6 269 389-696 8-307 (343)
144 3vgz_A Uncharacterized protein 99.9 1.1E-19 3.6E-24 192.4 33.0 269 331-635 46-335 (353)
145 1xfd_A DIP, dipeptidyl aminope 99.9 4.2E-21 1.4E-25 224.3 23.0 282 375-698 17-394 (723)
146 3scy_A Hypothetical bacterial 99.9 5.4E-19 1.8E-23 188.2 35.8 286 334-650 10-345 (361)
147 2oit_A Nucleoporin 214KDA; NH2 99.9 3.8E-19 1.3E-23 194.2 34.3 309 374-697 36-405 (434)
148 2ojh_A Uncharacterized protein 99.9 6.1E-20 2.1E-24 188.2 25.5 252 343-635 18-293 (297)
149 3hfq_A Uncharacterized protein 99.9 5.2E-19 1.8E-23 187.1 32.9 245 438-700 38-322 (347)
150 2ojh_A Uncharacterized protein 99.9 4.4E-20 1.5E-24 189.3 23.6 231 437-688 39-293 (297)
151 3hfq_A Uncharacterized protein 99.8 1.2E-18 4.3E-23 184.2 32.8 275 346-649 15-324 (347)
152 1z68_A Fibroblast activation p 99.8 8.7E-20 3E-24 213.1 25.1 321 332-700 22-446 (719)
153 1jmx_B Amine dehydrogenase; ox 99.8 5.7E-19 1.9E-23 186.3 27.2 235 449-706 11-334 (349)
154 2z3z_A Dipeptidyl aminopeptida 99.8 4.8E-19 1.6E-23 206.3 27.7 288 376-699 27-393 (706)
155 3o4h_A Acylamino-acid-releasin 99.8 2.1E-19 7.2E-24 204.4 24.1 267 373-697 20-315 (582)
156 3o4h_A Acylamino-acid-releasin 99.8 6.2E-19 2.1E-23 200.6 26.8 260 333-644 29-315 (582)
157 3pe7_A Oligogalacturonate lyas 99.8 7.9E-18 2.7E-22 180.7 30.4 296 373-702 29-387 (388)
158 1jmx_B Amine dehydrogenase; ox 99.8 2.8E-18 9.5E-23 180.9 25.1 245 379-653 4-334 (349)
159 3scy_A Hypothetical bacterial 99.8 1.2E-16 4.1E-21 169.9 36.2 248 438-700 48-342 (361)
160 2oit_A Nucleoporin 214KDA; NH2 99.8 4.4E-17 1.5E-21 177.8 32.7 249 332-598 43-331 (434)
161 4a5s_A Dipeptidyl peptidase 4 99.8 4.2E-17 1.4E-21 190.9 33.5 328 332-699 23-451 (740)
162 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.5E-16 5.1E-21 169.7 31.9 282 340-646 5-343 (365)
163 3pe7_A Oligogalacturonate lyas 99.8 2.7E-17 9.4E-22 176.5 24.3 272 332-642 42-380 (388)
164 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.8E-16 9.7E-21 167.5 31.3 247 439-698 39-342 (365)
165 1z68_A Fibroblast activation p 99.7 1.9E-17 6.5E-22 193.3 19.0 275 379-697 20-391 (719)
166 4a5s_A Dipeptidyl peptidase 4 99.7 3.6E-16 1.2E-20 182.9 27.7 249 374-648 16-357 (740)
167 2oiz_A Aromatic amine dehydrog 99.7 3.1E-15 1E-19 159.2 30.2 298 335-679 13-360 (361)
168 3c5m_A Oligogalacturonate lyas 99.7 2.5E-16 8.5E-21 169.2 20.3 280 376-696 37-381 (396)
169 1q7f_A NHL, brain tumor CG1071 99.7 2.5E-14 8.6E-19 146.6 34.3 239 437-698 27-281 (286)
170 1qks_A Cytochrome CD1 nitrite 99.7 1.3E-13 4.6E-18 154.3 41.2 327 335-705 165-546 (567)
171 3fvz_A Peptidyl-glycine alpha- 99.7 7.6E-15 2.6E-19 154.0 28.2 247 438-697 22-322 (329)
172 1q7f_A NHL, brain tumor CG1071 99.7 4.5E-14 1.5E-18 144.6 31.8 242 373-645 28-281 (286)
173 3c5m_A Oligogalacturonate lyas 99.7 2.8E-15 9.6E-20 160.9 21.7 281 332-646 42-386 (396)
174 3azo_A Aminopeptidase; POP fam 99.7 8.6E-15 2.9E-19 169.0 25.1 283 373-700 22-372 (662)
175 3fvz_A Peptidyl-glycine alpha- 99.6 6.4E-14 2.2E-18 146.9 28.3 260 374-644 23-322 (329)
176 3no2_A Uncharacterized protein 99.6 8.6E-14 2.9E-18 141.9 27.8 251 449-715 5-270 (276)
177 3dsm_A Uncharacterized protein 99.6 1E-13 3.5E-18 145.3 28.7 241 440-705 44-309 (328)
178 2dg1_A DRP35, lactonase; beta 99.6 1.5E-13 5E-18 144.2 29.9 272 374-688 5-301 (333)
179 3azo_A Aminopeptidase; POP fam 99.6 3.9E-14 1.3E-18 163.5 27.6 282 333-650 31-375 (662)
180 2oiz_A Aromatic amine dehydrog 99.6 1.7E-13 5.9E-18 145.6 27.6 240 444-703 54-342 (361)
181 2z2n_A Virginiamycin B lyase; 99.6 2E-11 6.8E-16 125.1 40.3 284 363-698 5-296 (299)
182 2gop_A Trilobed protease; beta 99.6 3.3E-13 1.1E-17 142.2 27.3 254 374-696 14-330 (347)
183 2gop_A Trilobed protease; beta 99.6 7.5E-13 2.6E-17 139.4 28.4 246 336-646 23-332 (347)
184 2xdw_A Prolyl endopeptidase; a 99.6 6.1E-13 2.1E-17 154.8 29.9 278 334-646 80-416 (710)
185 2bkl_A Prolyl endopeptidase; m 99.6 1.4E-13 4.8E-18 159.7 24.3 278 333-647 75-400 (695)
186 2xdw_A Prolyl endopeptidase; a 99.6 9.1E-13 3.1E-17 153.3 31.1 242 437-699 122-416 (710)
187 2bkl_A Prolyl endopeptidase; m 99.5 2.4E-13 8.2E-18 157.8 23.1 240 437-700 118-400 (695)
188 2dg1_A DRP35, lactonase; beta 99.5 5.1E-12 1.7E-16 132.3 30.6 264 333-635 13-301 (333)
189 3dsm_A Uncharacterized protein 99.5 5.6E-12 1.9E-16 132.0 30.2 266 346-652 16-309 (328)
190 3e5z_A Putative gluconolactona 99.5 5.9E-12 2E-16 129.6 29.0 230 438-698 26-287 (296)
191 3e5z_A Putative gluconolactona 99.5 8.4E-12 2.9E-16 128.4 27.8 235 373-647 26-289 (296)
192 3sjl_D Methylamine dehydrogena 99.5 1.8E-11 6E-16 128.9 29.9 281 333-653 40-372 (386)
193 1qks_A Cytochrome CD1 nitrite 99.5 6.2E-11 2.1E-15 132.7 35.5 270 384-698 165-478 (567)
194 2mad_H Methylamine dehydrogena 99.5 1.4E-10 4.9E-15 123.3 36.7 282 333-651 28-357 (373)
195 2z2n_A Virginiamycin B lyase; 99.5 2.9E-10 9.8E-15 116.4 37.7 269 333-646 22-297 (299)
196 1rwi_B Serine/threonine-protei 99.5 7E-12 2.4E-16 126.8 25.1 236 441-700 25-267 (270)
197 2qc5_A Streptogramin B lactona 99.5 5.5E-10 1.9E-14 114.3 37.9 282 364-696 11-299 (300)
198 1yr2_A Prolyl oligopeptidase; 99.5 7E-12 2.4E-16 146.5 25.8 280 333-647 114-444 (741)
199 1rwi_B Serine/threonine-protei 99.4 1.5E-11 5.1E-16 124.4 24.6 235 376-646 25-266 (270)
200 3no2_A Uncharacterized protein 99.4 5.5E-12 1.9E-16 128.5 20.7 194 488-706 4-204 (276)
201 2mad_H Methylamine dehydrogena 99.4 4.6E-10 1.6E-14 119.3 36.3 238 444-703 70-356 (373)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.3E-10 4.3E-15 120.3 30.1 235 438-697 16-299 (314)
203 3sjl_D Methylamine dehydrogena 99.4 8E-11 2.7E-15 123.9 27.7 280 380-704 38-370 (386)
204 1yr2_A Prolyl oligopeptidase; 99.4 5.1E-11 1.7E-15 139.2 27.6 285 383-700 115-444 (741)
205 2qc5_A Streptogramin B lactona 99.4 3.2E-09 1.1E-13 108.5 35.2 266 333-643 27-299 (300)
206 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 5.2E-10 1.8E-14 115.6 28.7 244 374-644 17-299 (314)
207 3c75_H MADH, methylamine dehyd 99.3 1.9E-10 6.5E-15 123.2 24.5 279 334-651 81-409 (426)
208 1xip_A Nucleoporin NUP159; bet 99.3 4E-10 1.4E-14 119.0 26.1 170 440-630 38-230 (388)
209 3g4e_A Regucalcin; six bladed 99.3 2.7E-09 9.1E-14 109.8 29.9 226 374-633 12-261 (297)
210 3g4e_A Regucalcin; six bladed 99.3 6.3E-09 2.2E-13 106.9 30.8 222 440-685 13-260 (297)
211 1yiq_A Quinohemoprotein alcoho 99.3 1.7E-09 5.7E-14 124.6 29.1 291 386-706 70-514 (689)
212 1kb0_A Quinohemoprotein alcoho 99.3 1.2E-09 4.2E-14 125.4 27.8 294 386-707 77-517 (677)
213 3q7m_A Lipoprotein YFGL, BAMB; 99.2 1.9E-08 6.5E-13 107.0 34.5 304 336-695 52-376 (376)
214 3hrp_A Uncharacterized protein 99.2 5.1E-09 1.8E-13 112.8 29.6 245 440-695 131-408 (409)
215 1xip_A Nucleoporin NUP159; bet 99.2 4.7E-10 1.6E-14 118.5 20.3 188 375-587 38-230 (388)
216 3c75_H MADH, methylamine dehyd 99.2 3.1E-09 1.1E-13 113.8 26.0 240 444-703 122-408 (426)
217 2ghs_A AGR_C_1268P; regucalcin 99.2 2.1E-08 7.2E-13 104.5 31.8 218 442-687 51-292 (326)
218 3hrp_A Uncharacterized protein 99.2 4.9E-09 1.7E-13 113.0 27.3 239 375-642 131-408 (409)
219 1yiq_A Quinohemoprotein alcoho 99.2 3.8E-09 1.3E-13 121.6 27.5 312 336-685 69-537 (689)
220 3q7m_A Lipoprotein YFGL, BAMB; 99.2 2.1E-08 7.2E-13 106.7 31.5 284 385-706 52-346 (376)
221 1kb0_A Quinohemoprotein alcoho 99.2 4.4E-09 1.5E-13 120.8 27.7 280 385-696 127-566 (677)
222 2ghs_A AGR_C_1268P; regucalcin 99.2 3.8E-08 1.3E-12 102.6 31.4 224 376-634 50-292 (326)
223 2qe8_A Uncharacterized protein 99.2 1.5E-09 5.3E-14 114.1 20.6 270 375-694 17-318 (343)
224 3iuj_A Prolyl endopeptidase; h 99.1 2.4E-09 8.2E-14 123.9 22.6 240 373-648 127-409 (693)
225 3dr2_A Exported gluconolactona 99.1 1E-08 3.5E-13 105.7 24.2 229 373-641 43-303 (305)
226 3dr2_A Exported gluconolactona 99.1 2.4E-08 8.4E-13 102.9 26.6 222 438-689 43-299 (305)
227 3iuj_A Prolyl endopeptidase; h 99.1 5.8E-09 2E-13 120.6 23.5 237 437-700 126-408 (693)
228 3hxj_A Pyrrolo-quinoline quino 99.0 8.9E-09 3.1E-13 107.0 20.6 294 339-699 32-326 (330)
229 2hz6_A Endoplasmic reticulum t 99.0 7.5E-12 2.6E-16 133.3 -4.0 227 449-706 9-249 (369)
230 1mda_H Methylamine dehydrogena 99.0 1E-08 3.5E-13 108.0 19.7 228 459-704 47-353 (368)
231 2hz6_A Endoplasmic reticulum t 99.0 1.4E-10 4.7E-15 123.4 5.5 187 489-705 8-200 (369)
232 1mda_H Methylamine dehydrogena 99.0 4.3E-09 1.5E-13 110.9 15.5 258 348-653 47-355 (368)
233 2qe8_A Uncharacterized protein 99.0 2.1E-08 7.2E-13 105.3 20.4 270 330-640 21-317 (343)
234 2ece_A 462AA long hypothetical 99.0 2.1E-07 7.1E-12 98.5 27.2 227 449-685 95-399 (462)
235 2ece_A 462AA long hypothetical 99.0 3.6E-07 1.2E-11 96.7 28.2 237 383-632 90-399 (462)
236 1fwx_A Nitrous oxide reductase 98.9 5.3E-08 1.8E-12 106.6 21.2 239 443-699 90-433 (595)
237 1kv9_A Type II quinohemoprotei 98.9 3.8E-07 1.3E-11 104.6 28.9 290 386-706 66-497 (668)
238 1npe_A Nidogen, entactin; glyc 98.9 3.9E-06 1.3E-10 84.3 33.0 198 441-652 37-246 (267)
239 1kv9_A Type II quinohemoprotei 98.8 9.1E-07 3.1E-11 101.4 28.4 291 336-653 65-497 (668)
240 2ad6_A Methanol dehydrogenase 98.8 1.7E-06 5.8E-11 97.1 29.3 243 446-706 112-503 (571)
241 4a2l_A BT_4663, two-component 98.8 3E-05 1E-09 90.9 41.2 324 336-699 225-573 (795)
242 3hxj_A Pyrrolo-quinoline quino 98.8 3.7E-08 1.3E-12 102.3 13.8 266 380-705 25-291 (330)
243 2iwa_A Glutamine cyclotransfer 98.8 2.4E-06 8E-11 85.1 25.6 214 469-698 10-238 (266)
244 4a2l_A BT_4663, two-component 98.8 8.6E-05 2.9E-09 87.1 43.2 321 335-699 272-616 (795)
245 1npe_A Nidogen, entactin; glyc 98.7 1.4E-05 4.8E-10 80.2 30.4 228 450-701 2-242 (267)
246 2ad6_A Methanol dehydrogenase 98.7 3.8E-06 1.3E-10 94.3 28.7 246 386-653 115-503 (571)
247 1w6s_A Methanol dehydrogenase 98.7 4.6E-06 1.6E-10 93.6 28.9 252 380-653 111-512 (599)
248 3nol_A Glutamine cyclotransfer 98.7 1.8E-06 6.2E-11 84.9 21.7 200 470-686 33-244 (262)
249 3nok_A Glutaminyl cyclase; bet 98.7 2.3E-06 8E-11 84.0 20.7 199 469-684 44-253 (268)
250 1w6s_A Methanol dehydrogenase 98.6 1E-05 3.5E-10 90.8 28.7 237 452-706 124-512 (599)
251 1flg_A Protein (quinoprotein e 98.6 1.9E-05 6.6E-10 88.6 31.0 244 446-706 114-525 (582)
252 1flg_A Protein (quinoprotein e 98.6 2.7E-05 9.2E-10 87.4 31.1 173 499-685 291-548 (582)
253 1fwx_A Nitrous oxide reductase 98.6 2.5E-06 8.7E-11 93.4 20.9 184 489-697 100-361 (595)
254 3nol_A Glutamine cyclotransfer 98.6 9.6E-06 3.3E-10 79.7 23.0 184 442-633 45-244 (262)
255 3v9f_A Two-component system se 98.6 0.00024 8.1E-09 83.1 39.3 327 335-699 267-613 (781)
256 2iwa_A Glutamine cyclotransfer 98.6 1.9E-05 6.6E-10 78.5 25.4 198 441-645 22-238 (266)
257 3nok_A Glutaminyl cyclase; bet 98.6 4.4E-06 1.5E-10 82.1 20.0 184 440-632 55-253 (268)
258 3mbr_X Glutamine cyclotransfer 98.6 4.2E-05 1.4E-09 74.5 26.4 200 469-686 10-223 (243)
259 3v9f_A Two-component system se 98.5 0.00049 1.7E-08 80.4 40.6 321 340-699 176-526 (781)
260 2fp8_A Strictosidine synthase; 98.5 6.3E-05 2.2E-09 77.7 28.7 233 442-698 21-314 (322)
261 3mbr_X Glutamine cyclotransfer 98.5 4.4E-05 1.5E-09 74.4 25.2 187 439-633 20-223 (243)
262 2xbg_A YCF48-like protein; pho 98.5 0.0011 3.7E-08 68.5 36.2 278 374-695 35-320 (327)
263 2fp8_A Strictosidine synthase; 98.4 0.00013 4.4E-09 75.3 27.9 247 375-644 19-313 (322)
264 2xtc_A F-box-like/WD repeat-co 98.4 2.2E-07 7.4E-12 73.5 4.6 55 127-181 4-67 (90)
265 1ijq_A LDL receptor, low-densi 98.3 0.0017 5.7E-08 66.8 33.1 203 439-652 29-246 (316)
266 2p4o_A Hypothetical protein; p 98.3 0.00052 1.8E-08 70.2 28.9 223 375-635 32-279 (306)
267 3v64_C Agrin; beta propeller, 98.3 0.00099 3.4E-08 69.6 30.9 227 449-699 44-277 (349)
268 3v64_C Agrin; beta propeller, 98.3 0.0019 6.5E-08 67.4 33.0 201 440-652 73-283 (349)
269 1ijq_A LDL receptor, low-densi 98.3 0.0012 4.2E-08 67.8 30.9 227 451-699 3-240 (316)
270 3v65_B Low-density lipoprotein 98.3 0.00066 2.3E-08 72.0 29.4 227 449-699 87-320 (386)
271 2p4o_A Hypothetical protein; p 98.2 0.00059 2E-08 69.8 27.9 228 440-687 32-278 (306)
272 3v65_B Low-density lipoprotein 98.2 0.0013 4.4E-08 69.8 30.5 202 439-652 115-326 (386)
273 3qqz_A Putative uncharacterize 98.2 0.0016 5.4E-08 64.2 28.3 219 473-696 21-252 (255)
274 3p5b_L Low density lipoprotein 98.2 0.0034 1.2E-07 66.8 33.1 205 438-652 110-328 (400)
275 3p5b_L Low density lipoprotein 98.1 0.0034 1.2E-07 66.8 32.1 230 449-700 83-323 (400)
276 1k3i_A Galactose oxidase precu 98.1 0.00012 4.3E-09 83.6 20.8 269 332-633 192-530 (656)
277 2xe4_A Oligopeptidase B; hydro 98.1 0.00019 6.6E-09 83.3 22.6 152 483-642 225-398 (751)
278 3qqz_A Putative uncharacterize 98.1 0.0015 5.1E-08 64.4 25.6 200 437-644 24-253 (255)
279 1k3i_A Galactose oxidase precu 98.1 0.00025 8.7E-09 81.0 22.6 233 442-686 245-530 (656)
280 4hw6_A Hypothetical protein, I 98.0 0.0023 7.8E-08 68.9 26.2 245 441-696 140-432 (433)
281 3sov_A LRP-6, low-density lipo 97.9 0.003 1E-07 64.8 25.9 226 451-700 6-241 (318)
282 3tc9_A Hypothetical hydrolase; 97.9 0.0057 2E-07 65.7 28.2 244 441-696 138-429 (430)
283 2xe4_A Oligopeptidase B; hydro 97.9 0.0005 1.7E-08 79.8 21.2 194 480-694 175-395 (751)
284 2xbg_A YCF48-like protein; pho 97.9 0.034 1.2E-06 57.1 35.6 191 440-642 122-320 (327)
285 3sov_A LRP-6, low-density lipo 97.8 0.012 4.3E-07 60.2 28.4 200 441-652 36-246 (318)
286 3m0c_C LDL receptor, low-densi 97.8 0.021 7.1E-07 66.0 32.9 203 438-651 422-639 (791)
287 3amr_A 3-phytase; beta-propell 97.7 0.019 6.4E-07 58.8 26.9 192 451-652 42-272 (355)
288 3ei3_A DNA damage-binding prot 97.7 0.11 3.7E-06 62.8 38.0 326 337-697 571-999 (1158)
289 3m0c_C LDL receptor, low-densi 97.7 0.022 7.5E-07 65.8 30.4 229 449-699 395-634 (791)
290 4hw6_A Hypothetical protein, I 97.6 0.013 4.3E-07 63.0 25.5 242 375-643 139-432 (433)
291 3amr_A 3-phytase; beta-propell 97.6 0.013 4.6E-07 59.9 23.9 181 491-696 42-262 (355)
292 4a0p_A LRP6, LRP-6, low-densit 97.6 0.056 1.9E-06 60.9 31.2 226 450-700 7-240 (628)
293 1n7d_A LDL receptor, low-densi 97.6 0.00039 1.3E-08 79.8 13.2 202 440-652 406-622 (699)
294 3ei3_A DNA damage-binding prot 97.6 0.28 9.6E-06 59.1 40.6 308 336-699 522-915 (1158)
295 3kya_A Putative phosphatase; s 97.5 0.054 1.8E-06 58.6 28.4 252 441-700 140-478 (496)
296 2p9w_A MAL S 1 allergenic prot 97.4 0.0076 2.6E-07 61.2 18.0 163 479-644 13-215 (334)
297 3s94_A LRP-6, low-density lipo 97.3 0.32 1.1E-05 54.6 37.1 331 328-698 42-424 (619)
298 4a0p_A LRP6, LRP-6, low-densit 97.3 0.24 8.2E-06 55.7 31.6 198 440-651 37-244 (628)
299 2p9w_A MAL S 1 allergenic prot 97.3 0.15 5.1E-06 51.7 26.6 199 443-646 16-267 (334)
300 2xzh_A Clathrin heavy chain 1; 97.3 0.18 6.1E-06 50.7 33.0 260 348-647 50-335 (365)
301 3tc9_A Hypothetical hydrolase; 97.3 0.012 4E-07 63.3 19.4 154 480-644 138-301 (430)
302 3s94_A LRP-6, low-density lipo 97.2 0.074 2.5E-06 59.8 25.9 225 452-699 12-245 (619)
303 1bpo_A Protein (clathrin); cla 97.2 0.31 1.1E-05 50.9 34.2 261 347-647 48-334 (494)
304 3kya_A Putative phosphatase; s 97.1 0.054 1.8E-06 58.6 22.6 210 480-698 140-410 (496)
305 1n7d_A LDL receptor, low-densi 97.1 0.001 3.5E-08 76.2 9.2 228 451-700 379-617 (699)
306 2xzh_A Clathrin heavy chain 1; 97.0 0.38 1.3E-05 48.4 31.7 225 449-698 78-333 (365)
307 3ii7_A Kelch-like protein 7; p 96.7 0.26 8.8E-06 49.7 22.5 184 449-647 56-275 (306)
308 3sre_A PON1, serum paraoxonase 96.7 0.53 1.8E-05 48.5 24.6 197 480-696 51-297 (355)
309 3ott_A Two-component system se 96.6 0.77 2.6E-05 52.9 29.1 233 439-699 21-262 (758)
310 3ii7_A Kelch-like protein 7; p 96.6 0.31 1.1E-05 49.0 22.8 227 451-705 14-278 (306)
311 2be1_A Serine/threonine-protei 96.6 0.0026 9E-08 65.3 6.9 201 491-702 12-236 (339)
312 3a9g_A Putative uncharacterize 96.6 0.82 2.8E-05 47.2 28.3 230 440-685 29-330 (354)
313 1uuj_A Platelet-activating fac 96.6 0.0014 4.8E-08 51.4 3.4 61 123-183 5-67 (88)
314 2xn4_A Kelch-like protein 2; s 96.5 0.27 9.4E-06 49.3 21.6 222 458-706 30-283 (302)
315 3pbp_A Nucleoporin NUP82; beta 96.5 0.19 6.5E-06 52.5 19.9 168 528-705 29-219 (452)
316 1bpo_A Protein (clathrin); cla 96.5 1.1 3.8E-05 46.9 34.5 226 450-698 78-332 (494)
317 3pbp_A Nucleoporin NUP82; beta 96.4 0.23 7.7E-06 52.0 19.9 158 335-505 30-209 (452)
318 2ism_A Putative oxidoreductase 96.4 0.48 1.6E-05 49.0 23.0 105 478-587 30-151 (352)
319 2ism_A Putative oxidoreductase 96.4 1.1 3.7E-05 46.3 26.2 226 441-685 32-333 (352)
320 2vpj_A Kelch-like protein 12; 96.4 0.4 1.4E-05 48.1 21.7 183 449-646 63-280 (301)
321 2vpj_A Kelch-like protein 12; 96.3 0.33 1.1E-05 48.7 20.7 220 458-705 31-284 (301)
322 2xn4_A Kelch-like protein 2; s 96.0 0.78 2.7E-05 45.9 21.8 183 449-646 62-278 (302)
323 2g8s_A Glucose/sorbosone dehyd 96.0 1.7 5.9E-05 44.7 25.3 237 441-695 19-350 (353)
324 4asc_A Kelch repeat and BTB do 95.9 1.3 4.3E-05 44.7 22.9 227 453-705 8-283 (315)
325 3sre_A PON1, serum paraoxonase 95.9 0.76 2.6E-05 47.3 20.6 181 457-652 82-308 (355)
326 1xi4_A Clathrin heavy chain; a 95.8 0.46 1.6E-05 57.1 20.8 239 379-647 70-334 (1630)
327 3ott_A Two-component system se 95.7 4 0.00014 46.8 39.5 320 336-699 156-504 (758)
328 2be1_A Serine/threonine-protei 95.7 0.33 1.1E-05 49.7 16.9 196 388-605 12-236 (339)
329 3das_A Putative oxidoreductase 95.6 0.62 2.1E-05 47.8 18.5 114 515-632 27-158 (347)
330 3a9g_A Putative uncharacterize 95.5 0.66 2.3E-05 48.0 19.0 106 478-587 28-151 (354)
331 1zgk_A Kelch-like ECH-associat 95.5 0.73 2.5E-05 46.3 18.9 229 449-705 25-293 (308)
332 1xi4_A Clathrin heavy chain; a 95.1 1.6 5.4E-05 52.6 22.1 190 449-650 77-295 (1630)
333 2woz_A Kelch repeat and BTB do 95.1 3.1 0.00011 41.8 22.4 222 458-705 24-293 (318)
334 1zgk_A Kelch-like ECH-associat 95.1 1.6 5.3E-05 43.9 19.9 175 458-647 90-290 (308)
335 2uvk_A YJHT; unknown function, 95.1 1.3 4.5E-05 45.4 19.7 59 592-652 286-350 (357)
336 3sbq_A Nitrous-oxide reductase 94.9 4.6 0.00016 43.6 22.6 188 449-645 142-409 (638)
337 1tl2_A L10, protein (tachylect 94.7 0.26 9E-06 46.6 11.5 147 480-637 42-203 (236)
338 1cru_A Protein (soluble quinop 94.7 3.6 0.00012 44.0 22.1 111 520-633 27-163 (454)
339 1cru_A Protein (soluble quinop 94.5 5.1 0.00017 42.8 22.8 107 478-587 26-160 (454)
340 3s25_A Hypothetical 7-bladed b 94.4 4.6 0.00016 40.5 26.3 218 333-599 21-254 (302)
341 4asc_A Kelch repeat and BTB do 94.4 4.5 0.00016 40.5 25.3 100 449-551 99-222 (315)
342 2uvk_A YJHT; unknown function, 94.3 2.7 9.2E-05 43.0 19.6 88 449-540 20-128 (357)
343 2g8s_A Glucose/sorbosone dehyd 94.3 1 3.6E-05 46.4 16.3 106 521-632 19-148 (353)
344 2woz_A Kelch repeat and BTB do 94.2 3.9 0.00013 41.0 20.5 175 460-649 80-292 (318)
345 3das_A Putative oxidoreductase 94.1 2.5 8.7E-05 43.2 18.5 112 473-587 26-156 (347)
346 3s25_A Hypothetical 7-bladed b 94.0 5.5 0.00019 39.9 22.2 170 447-646 23-218 (302)
347 1tl2_A L10, protein (tachylect 93.6 1.6 5.4E-05 41.4 14.3 143 491-643 6-162 (236)
348 2zwa_A Leucine carboxyl methyl 92.2 4.2 0.00014 46.1 18.4 196 449-648 398-639 (695)
349 2zwa_A Leucine carboxyl methyl 90.0 15 0.0005 41.6 20.1 196 491-704 400-640 (695)
350 3qhy_B Beta-lactamase inhibito 89.3 9.6 0.00033 37.6 15.9 221 441-698 25-247 (282)
351 3qhy_B Beta-lactamase inhibito 87.7 22 0.00076 34.9 17.4 182 441-645 64-247 (282)
352 3sbq_A Nitrous-oxide reductase 84.0 4.1 0.00014 44.0 9.8 125 500-633 299-454 (638)
353 3q6k_A 43.2 kDa salivary prote 83.8 42 0.0014 34.5 21.8 154 458-644 123-306 (381)
354 3q6k_A 43.2 kDa salivary prote 81.1 14 0.00046 38.2 12.4 147 542-697 124-306 (381)
355 2wg3_C Hedgehog-interacting pr 80.9 24 0.00081 37.6 14.8 112 521-634 15-159 (463)
356 4hvt_A Ritya.17583.B, post-pro 77.1 1E+02 0.0035 34.7 22.7 181 458-646 216-431 (711)
357 3no0_A DNA gyrase subunit A; D 75.0 64 0.0022 31.4 17.6 204 480-697 25-246 (276)
358 2d68_A FOP, FGFR1OP; alpha hel 74.2 2.8 9.5E-05 32.5 3.6 43 109-158 6-48 (82)
359 4gq2_M Nucleoporin NUP120; bet 74.1 12 0.00042 43.9 10.9 42 613-654 235-276 (950)
360 3uc1_A DNA gyrase subunit A; D 71.1 89 0.003 31.3 20.5 150 489-644 108-279 (327)
361 3b7f_A Glycosyl hydrolase, BNR 69.8 1E+02 0.0035 31.5 21.9 206 491-705 24-268 (394)
362 2wg3_C Hedgehog-interacting pr 69.6 51 0.0018 35.0 13.6 111 571-688 14-160 (463)
363 2c9l_Y EB1, zebra, BZLF1 trans 68.7 2.3 7.7E-05 29.2 1.7 17 108-124 37-53 (63)
364 4gq2_M Nucleoporin NUP120; bet 68.1 54 0.0019 38.4 14.6 40 520-559 236-275 (950)
365 3uc1_A DNA gyrase subunit A; D 52.2 1.9E+02 0.0065 28.8 21.4 163 520-697 95-279 (327)
366 3b7f_A Glycosyl hydrolase, BNR 50.7 2.1E+02 0.0073 28.9 26.0 245 449-705 22-328 (394)
367 3elq_A Arylsulfate sulfotransf 48.1 3E+02 0.01 29.8 17.5 133 571-708 207-395 (571)
368 1v32_A AT5G08430, hypothetical 45.1 25 0.00086 28.4 4.4 45 100-145 8-54 (101)
369 3f7f_A Nucleoporin NUP120; nuc 45.0 66 0.0023 36.0 9.2 32 622-653 228-259 (729)
370 4a9v_A PHOX; hydrolase, beta-p 42.7 75 0.0026 34.5 9.0 62 571-633 476-550 (592)
371 3zwu_A Alkaline phosphatase PH 42.1 70 0.0024 35.0 8.9 60 572-632 477-549 (592)
372 3ewt_E Tumor necrosis factor r 37.7 30 0.001 20.0 2.6 25 72-97 1-25 (25)
373 1zbp_A Hypothetical protein VP 33.9 65 0.0022 31.2 6.1 55 135-189 4-63 (273)
374 4fhn_B Nucleoporin NUP120; pro 33.0 2.5E+02 0.0085 33.6 12.6 37 480-516 239-276 (1139)
375 3no0_A DNA gyrase subunit A; D 32.2 3.5E+02 0.012 26.0 19.2 186 449-644 36-246 (276)
376 3gio_A Putative uncharacterize 30.6 25 0.00086 30.1 2.3 73 46-141 97-169 (186)
377 4a9v_A PHOX; hydrolase, beta-p 30.0 2.1E+02 0.0071 31.1 9.9 60 479-538 476-549 (592)
378 2bp3_S Platelet glycoprotein I 29.9 20 0.00067 20.1 1.0 17 3-24 1-17 (26)
379 2zux_A YESW protein; beta-prop 29.7 5.6E+02 0.019 27.6 21.3 136 460-609 231-409 (591)
380 4hvt_A Ritya.17583.B, post-pro 29.2 6.4E+02 0.022 28.1 18.3 191 486-699 137-383 (711)
381 3f7f_A Nucleoporin NUP120; nuc 27.6 83 0.0029 35.2 6.5 37 440-476 222-259 (729)
382 4fhn_B Nucleoporin NUP120; pro 26.8 43 0.0015 40.2 4.5 40 615-654 239-278 (1139)
383 1vk8_A Hypothetical protein TM 26.1 23 0.00079 28.9 1.3 29 154-183 44-72 (106)
384 1zi0_A DNA gyrase subunit A; b 23.5 5.2E+02 0.018 25.2 24.2 240 449-697 3-277 (307)
385 1oyi_A Double-stranded RNA-bin 23.1 34 0.0011 26.5 1.6 34 124-159 11-44 (82)
386 1wp5_A Topoisomerase IV; broke 22.1 5.7E+02 0.02 25.1 24.6 231 451-697 7-277 (323)
387 1suu_A DNA gyrase subunit A; t 21.3 5.8E+02 0.02 24.9 25.4 242 449-697 8-283 (312)
388 3zwu_A Alkaline phosphatase PH 20.2 2.5E+02 0.0085 30.7 8.4 60 615-684 477-548 (592)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.1e-46 Score=405.56 Aligned_cols=278 Identities=18% Similarity=0.218 Sum_probs=248.2
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 450 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 450 (723)
|.+.|++++|+|++++|++|+.||+|++||+.++.. . ..+. +|...|.+++|+ ++
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~-----~----------------~~l~--~h~~~V~~v~~~~~~~ 163 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-----E----------------RTLK--GHTDSVQDISFDHSGK 163 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC-----C----------------EEEC--CCSSCEEEEEECTTSS
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-----E----------------EEEe--ccCCcEEEEEEcCCCC
Confidence 999999999999999999999999999999874322 1 1111 699999999999 88
Q ss_pred EEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEc
Q 004924 451 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 528 (723)
Q Consensus 451 ~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~s 528 (723)
+|++|+ ||+|++||+.+++++..+.+|...|.+++|+|++ .+++|+.|++|++||+.++.++..+.+|...|.++.|+
T Consensus 164 ~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~ 243 (410)
T 1vyh_C 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243 (410)
T ss_dssp EEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred EEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEEC
Confidence 999999 9999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccC--------------------CCEEEE-
Q 004924 529 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--------------------QIHLLS- 587 (723)
Q Consensus 529 pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spd--------------------g~~l~~- 587 (723)
|+|.++++|+.|++|++||+.+++. .. ...+|. ..|.+++|+|+ |.++++
T Consensus 244 ~~g~~l~s~s~D~~v~vwd~~~~~~-----~~-~~~~h~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg 314 (410)
T 1vyh_C 244 QDGTLIASCSNDQTVRVWVVATKEC-----KA-ELREHR---HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314 (410)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCE-----EE-EECCCS---SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCce-----ee-EecCCC---ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence 9999999999999999999998542 22 234555 78999999996 567888
Q ss_pred EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccc
Q 004924 588 IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELY 667 (723)
Q Consensus 588 s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~ 667 (723)
+.|+.|++||+++++++..+. +|...|.+++|+|+|++|++|+.||.|++||+.+++.+..+..| .+.|
T Consensus 315 s~D~~i~iwd~~~~~~~~~~~--~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h--------~~~v- 383 (410)
T 1vyh_C 315 SRDKTIKMWDVSTGMCLMTLV--GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH--------EHFV- 383 (410)
T ss_dssp ETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC--------SSCE-
T ss_pred eCCCeEEEEECCCCceEEEEE--CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCC--------CCcE-
Confidence 599999999999999988886 46899999999999999999999999999999999988887632 3444
Q ss_pred eEEEEEecCCCCEEEEEECCCcEEEEec
Q 004924 668 PLVIAAHPLEPNRIALGLTNGRVHVIEP 695 (723)
Q Consensus 668 ~~~v~~sp~d~~~las~s~Dg~v~iWd~ 695 (723)
++++|+| ++.+|++||.||+|+||++
T Consensus 384 -~~l~~~~-~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 384 -TSLDFHK-TAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp -EEEEECS-SSSCEEEEETTSEEEEEC-
T ss_pred -EEEEEcC-CCCEEEEEeCCCcEEEEeC
Confidence 4999999 8999999999999999986
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.9e-42 Score=395.63 Aligned_cols=366 Identities=13% Similarity=0.103 Sum_probs=283.0
Q ss_pred CCcceeeccCCCC-CCceeeeCCCcccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEE
Q 004924 304 EGRPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIY 382 (723)
Q Consensus 304 ~~~~~~~~~~h~~-v~s~~~~~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~f 382 (723)
.+.....+.+|.. |.+ ..++|||+++|+|+.|++|+|||+... .......+++ |.+.|.+++|
T Consensus 48 ~~~~~~~~~~h~~~v~~-----------~~~spdg~~lasg~~d~~v~lWd~~~~---~~~~~~~~~~--~~~~v~~v~f 111 (611)
T 1nr0_A 48 SLTDTEIYTEHSHQTTV-----------AKTSPSGYYCASGDVHGNVRIWDTTQT---THILKTTIPV--FSGPVKDISW 111 (611)
T ss_dssp CSSCCEEECCCSSCEEE-----------EEECTTSSEEEEEETTSEEEEEESSST---TCCEEEEEEC--SSSCEEEEEE
T ss_pred CcccCeEecCCCCceEE-----------EEECCCCcEEEEEeCCCCEEEeECCCC---cceeeEeecc--cCCceEEEEE
Confidence 3455566666666 333 338899999999999999999998642 2222233554 9999999999
Q ss_pred eCCCCEEEEEECC----CcEEEEeccCCcc---------------ccccc-cee----eeeEEEecCCCeeeeeccCCCC
Q 004924 383 SHSGDFLVALTQT----ATHKLWKWQSNKQ---------------SLEEE-NVN----MESQLYQPSSKLVMTNDIAADP 438 (723)
Q Consensus 383 spdg~~las~s~d----g~i~iWd~~~~~~---------------~~g~~-~~~----~~~~~~~~~~~~~~~~~~~~~h 438 (723)
+|+|++|++++.+ ++|++||...... +++.. ... ..+++|+..++.+...+. +|
T Consensus 112 s~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~--~H 189 (611)
T 1nr0_A 112 DSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG--EH 189 (611)
T ss_dssp CTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC--CC
T ss_pred CCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec--cc
Confidence 9999999999875 4788887432111 22221 111 136899988887776554 79
Q ss_pred CCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEe-------CCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCC
Q 004924 439 KDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-------NPPPIATYFILLPQD-LFAFGFDDSSILVHCPC 507 (723)
Q Consensus 439 ~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~-------~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~ 507 (723)
...|.+++|+ |++|++|+ |++|++||+.+++....+. +|...|.+++|+|++ .|++|+.|++|++||+.
T Consensus 190 ~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~ 269 (611)
T 1nr0_A 190 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA 269 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999 88999999 9999999999999988884 799999999999999 99999999999999998
Q ss_pred CCcEEE-------------------------------------------EEcCcCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 004924 508 TKKTKA-------------------------------------------KLKGHQNRITCLAYSLSLNVLVSSGADAQLC 544 (723)
Q Consensus 508 ~~~~~~-------------------------------------------~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~ 544 (723)
+++.+. .+.+|...|.+++|+|+|++|++++.|++|+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~ 349 (611)
T 1nr0_A 270 TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHIN 349 (611)
T ss_dssp TTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Confidence 876543 3457899999999999999999999999999
Q ss_pred EEeCCCCceeecee------e--------------------ee--------------------------e-ec-------
Q 004924 545 VWDAVGWKKLCSKF------L--------------------HS--------------------------F-QT------- 564 (723)
Q Consensus 545 vwd~~~~~~~~~~~------l--------------------~~--------------------------~-~~------- 564 (723)
+||+.++....... + .. + +.
T Consensus 350 ~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~ 429 (611)
T 1nr0_A 350 SWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA 429 (611)
T ss_dssp EEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE
T ss_pred EEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEE
Confidence 99998764321100 0 00 0 00
Q ss_pred ----------------CCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcE
Q 004924 565 ----------------GLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKC 627 (723)
Q Consensus 565 ----------------~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~ 627 (723)
.|. ..+.+++|+|||+++++ +.|++|++||+.++....... ..|...|.+++|+|||++
T Consensus 430 ~~~~v~~~~~~~~~~~~~~---~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~ 505 (611)
T 1nr0_A 430 CYKHIAIYSHGKLTEVPIS---YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAF 505 (611)
T ss_dssp ESSEEEEEETTEEEEEECS---SCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSE
T ss_pred eCceEEEEeCCceeeeecC---CCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCE
Confidence 011 45789999999999999 599999999998765422222 257899999999999999
Q ss_pred EEEEeCCCcEEEEECCC-CcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCce
Q 004924 628 IYVSCKSGHVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 700 (723)
Q Consensus 628 l~sgs~dg~I~iwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~ 700 (723)
|++++.|++|++|++.+ +++..... .+.|...|+ +++|+| ++++||+||.|++|+||++.+++.
T Consensus 506 las~s~d~~v~~w~~~~~~~~~~~~~------~~~H~~~V~--~v~fsp-dg~~lasgs~D~~v~lW~~~~~~~ 570 (611)
T 1nr0_A 506 LVATDQSRKVIPYSVANNFELAHTNS------WTFHTAKVA--CVSWSP-DNVRLATGSLDNSVIVWNMNKPSD 570 (611)
T ss_dssp EEEEETTSCEEEEEGGGTTEESCCCC------CCCCSSCEE--EEEECT-TSSEEEEEETTSCEEEEETTCTTS
T ss_pred EEEEcCCCCEEEEEcCCCCceeeeee------eeeccccee--EEEECC-CCCEEEEEECCCcEEEEECCCccc
Confidence 99999999999999987 55433211 121344455 999999 899999999999999999988753
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9e-41 Score=383.29 Aligned_cols=342 Identities=14% Similarity=0.153 Sum_probs=271.3
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcc--
Q 004924 331 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ-- 408 (723)
Q Consensus 331 ~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~-- 408 (723)
..++|||+++++++ ++.|++|++.+ +..... +.+ |.+.|++++|||+|++||+|+.||+|+|||+.+...
T Consensus 24 ~~~spdg~~l~~~~-~~~v~l~~~~~----~~~~~~-~~~--h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~ 95 (611)
T 1nr0_A 24 LGNTPAGDKIQYCN-GTSVYTVPVGS----LTDTEI-YTE--HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL 95 (611)
T ss_dssp CEECTTSSEEEEEE-TTEEEEEETTC----SSCCEE-ECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred EeeCCCCCEEEeCC-CCEEEEecCCC----cccCeE-ecC--CCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCccee
Confidence 34899999999998 67999999974 222222 444 999999999999999999999999999999864321
Q ss_pred -----------------ccccccee--------eeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC-EEEEEe-CCc
Q 004924 409 -----------------SLEEENVN--------MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HLFSAS-GGK 459 (723)
Q Consensus 409 -----------------~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~-~l~s~s-dg~ 459 (723)
++|..... ..+.+|+ .+.....+ .+|...|.+++|+ +. .|++|+ |++
T Consensus 96 ~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l--~gh~~~v~~v~f~p~~~~~l~s~s~D~~ 171 (611)
T 1nr0_A 96 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNL--TGQARAMNSVDFKPSRPFRIISGSDDNT 171 (611)
T ss_dssp EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCC--CCCSSCEEEEEECSSSSCEEEEEETTSC
T ss_pred eEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCccee--cCCCCCceEEEECCCCCeEEEEEeCCCe
Confidence 12222111 1244555 33333332 2799999999999 44 699999 999
Q ss_pred EEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEc-------CcCCcEEEEEEcCCC
Q 004924 460 ISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-------GHQNRITCLAYSLSL 531 (723)
Q Consensus 460 I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~-------~~~~~i~~l~~spdg 531 (723)
|++||..++++...+.+|...|.+++|+|+| .|++|+.|++|++||+.+++.+..+. +|.+.|.+++|+|+|
T Consensus 172 v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg 251 (611)
T 1nr0_A 172 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG 251 (611)
T ss_dssp EEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred EEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCC
Confidence 9999999999999999999999999999999 99999999999999999999998884 799999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeecee-------------------------------------eeeeecCCCCCCCCeE
Q 004924 532 NVLVSSGADAQLCVWDAVGWKKLCSKF-------------------------------------LHSFQTGLVPETTIVN 574 (723)
Q Consensus 532 ~~l~s~s~dg~I~vwd~~~~~~~~~~~-------------------------------------l~~~~~~~~~~~~~v~ 574 (723)
++|++++.|++|++||+.+++...... ......+|. ..|.
T Consensus 252 ~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~---~~v~ 328 (611)
T 1nr0_A 252 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHN---KAIT 328 (611)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCS---SCEE
T ss_pred CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCC---CCEE
Confidence 999999999999999999875433211 011234566 7899
Q ss_pred EEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecC--------------------------------------------
Q 004924 575 HIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVP-------------------------------------------- 609 (723)
Q Consensus 575 ~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~-------------------------------------------- 609 (723)
+++|+|+|++|++ +.|+.|++||+.+++....+..
T Consensus 329 ~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~ 408 (611)
T 1nr0_A 329 ALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVAN 408 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEE
T ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeee
Confidence 9999999999998 5999999999987654332100
Q ss_pred -------------C-----------------------CCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeec
Q 004924 610 -------------D-----------------------KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 653 (723)
Q Consensus 610 -------------~-----------------------~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 653 (723)
. .|...+.+++|+|||++|++|+.|++|++||+.++........
T Consensus 409 ~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~ 488 (611)
T 1nr0_A 409 KLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTI 488 (611)
T ss_dssp ECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEE
T ss_pred ecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeecc
Confidence 0 0124577899999999999999999999999988754321111
Q ss_pred ccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCC
Q 004924 654 TAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 654 ~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~ 697 (723)
+| ...+ .+++|+| ++++|++++.|++|++|++.+
T Consensus 489 ------~h-~~~v--~~v~fsp-dg~~las~s~d~~v~~w~~~~ 522 (611)
T 1nr0_A 489 ------VH-PAEI--TSVAFSN-NGAFLVATDQSRKVIPYSVAN 522 (611)
T ss_dssp ------EC-SSCE--EEEEECT-TSSEEEEEETTSCEEEEEGGG
T ss_pred ------CC-CCce--EEEEECC-CCCEEEEEcCCCCEEEEEcCC
Confidence 22 3344 4999999 899999999999999999987
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7e-40 Score=347.69 Aligned_cols=282 Identities=13% Similarity=0.162 Sum_probs=246.2
Q ss_pred cCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEE
Q 004924 368 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 447 (723)
Q Consensus 368 l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 447 (723)
+.+ |.+.|++++|+|+|++|++|+.||+|++||..++.. .. ... .|...|.+++|
T Consensus 51 l~g--H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~-----~~----------------~~~--~~~~~v~~~~~ 105 (340)
T 1got_B 51 LRG--HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-----VH----------------AIP--LRSSWVMTCAY 105 (340)
T ss_dssp ECC--CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-----EE----------------EEE--CSSSCEEEEEE
T ss_pred ecC--CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc-----ce----------------Eee--cCCccEEEEEE
Confidence 444 999999999999999999999999999999764322 11 111 58899999999
Q ss_pred e--CCEEEEEe-CCcEEEEEcCCC----cEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEcCcCC
Q 004924 448 R--GSHLFSAS-GGKISIFSLETF----QTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQN 520 (723)
Q Consensus 448 s--~~~l~s~s-dg~I~vwd~~~~----~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~ 520 (723)
+ ++++++|+ |+.|++|++.++ .....+.+|...|.++.|++++.+++++.|++|++||+.+++.+..+.+|..
T Consensus 106 s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~ 185 (340)
T 1got_B 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185 (340)
T ss_dssp CTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCC
Confidence 9 88999999 999999999875 3566778999999999999888888999999999999999999999999999
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECC
Q 004924 521 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP 599 (723)
Q Consensus 521 ~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~ 599 (723)
.|.+++|+|+++++++|+.|++|++||++++.. +. ...+|. ..|.+++|+|++.+|++ +.|+.|++||++
T Consensus 186 ~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~-----~~-~~~~h~---~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~ 256 (340)
T 1got_B 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMC-----RQ-TFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLR 256 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCSE-----EE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEECCCCee-----EE-EEcCCc---CCEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence 999999999999999999999999999998532 33 234565 78999999999999998 589999999999
Q ss_pred CCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCC
Q 004924 600 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 679 (723)
Q Consensus 600 ~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~ 679 (723)
+++.+..+....+...|.+++|+|+|++|++|+.||.|++||..+++....+.. | ...|. +++|+| ++.
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~-------h-~~~v~--~~~~s~-dg~ 325 (340)
T 1got_B 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG-------H-DNRVS--CLGVTD-DGM 325 (340)
T ss_dssp TTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-------C-SSCEE--EEEECT-TSS
T ss_pred CCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeec-------C-CCcEE--EEEEcC-CCC
Confidence 998887775444456899999999999999999999999999999998888763 2 44455 999999 899
Q ss_pred EEEEEECCCcEEEEe
Q 004924 680 RIALGLTNGRVHVIE 694 (723)
Q Consensus 680 ~las~s~Dg~v~iWd 694 (723)
+||+||.||+|+|||
T Consensus 326 ~l~s~s~D~~i~iWd 340 (340)
T 1got_B 326 AVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEETTSCEEEEC
T ss_pred EEEEEcCCccEEecC
Confidence 999999999999997
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.4e-40 Score=345.54 Aligned_cols=282 Identities=17% Similarity=0.227 Sum_probs=247.0
Q ss_pred CCCCceEEEEEeCC----CCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEE
Q 004924 372 SFGGRVVRLIYSHS----GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 447 (723)
Q Consensus 372 ~h~~~V~~l~fspd----g~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 447 (723)
+|.+.|++++|+|+ +.+|+||+.|++|+||++..... . ..|. ..+|...|.+++|
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-----~-----~~~~-----------l~gh~~~v~~~~~ 88 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-----D-----LQWS-----------LEGHQLGVVSVDI 88 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-----E-----EEEE-----------ECCCSSCEEEEEE
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-----e-----eeee-----------eccCCCCEEEEEE
Confidence 49999999999985 67999999999999999763211 0 0111 1279999999999
Q ss_pred e--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEE
Q 004924 448 R--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT 523 (723)
Q Consensus 448 s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~ 523 (723)
+ +.++++++ |++|++||+.+++.+..+..+...+.+++|+|++ .+++|+.||.|++||+.+++....+..|...|.
T Consensus 89 ~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~ 168 (321)
T 3ow8_A 89 SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 168 (321)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEE
Confidence 9 88999999 9999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCc
Q 004924 524 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN 602 (723)
Q Consensus 524 ~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~ 602 (723)
+++|+|+|++|++|+.||.|++||+++++ .+. ...+|. ..|.+++|+|++++|+++ .|+.|++||+++++
T Consensus 169 ~~~~spdg~~lasg~~dg~i~iwd~~~~~-----~~~-~~~~h~---~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~ 239 (321)
T 3ow8_A 169 SIAYSPDGKYLASGAIDGIINIFDIATGK-----LLH-TLEGHA---MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN 239 (321)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTE-----EEE-EECCCS---SCCCEEEECTTSCEEEEECTTSCEEEEETTTCC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCc-----EEE-EEcccC---CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc
Confidence 99999999999999999999999999863 333 234565 789999999999999985 89999999999999
Q ss_pred eeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEE
Q 004924 603 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 682 (723)
Q Consensus 603 ~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la 682 (723)
....+. +|...|.+++|+|++++|++|+.||+|++||+.+++++..+..+ ...++ +++|+| ++.+|+
T Consensus 240 ~~~~~~--~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h--------~~~v~--~v~~s~-~g~~l~ 306 (321)
T 3ow8_A 240 LAGTLS--GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH--------QDQVW--GVKYNG-NGSKIV 306 (321)
T ss_dssp EEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC--------SSCEE--EEEECT-TSSEEE
T ss_pred eeEEEc--CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC--------CCcEE--EEEECC-CCCEEE
Confidence 888876 47899999999999999999999999999999999998888632 34455 999999 899999
Q ss_pred EEECCCcEEEEecC
Q 004924 683 LGLTNGRVHVIEPL 696 (723)
Q Consensus 683 s~s~Dg~v~iWd~~ 696 (723)
+++.||+|+|||..
T Consensus 307 s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 307 SVGDDQEIHIYDCP 320 (321)
T ss_dssp EEETTCCEEEEECC
T ss_pred EEeCCCeEEEEeCC
Confidence 99999999999963
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.4e-39 Score=366.40 Aligned_cols=325 Identities=17% Similarity=0.234 Sum_probs=274.3
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcc---
Q 004924 332 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ--- 408 (723)
Q Consensus 332 ~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~--- 408 (723)
.++|+|+++++++.|+.|++|+.. +.+... +.+ |...|.+++|+|+|+++++++.|++|++|+......
T Consensus 228 ~~s~dg~~l~~~~~d~~i~~w~~~-----~~~~~~-~~~--~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~ 299 (577)
T 2ymu_A 228 AFSPDGQTIASASDDKTVKLWNRN-----GQLLQT-LTG--HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTL 299 (577)
T ss_dssp EECTTSSCEEEEETTSCEEEECTT-----SCEEEE-ECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEE
T ss_pred EECCCCCEEEEEeCCCEEEEEeCC-----CCEEEE-Eec--CCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEE
Confidence 378899999999999999999965 233322 444 999999999999999999999999999999754322
Q ss_pred -------------ccccccee----eeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCC
Q 004924 409 -------------SLEEENVN----MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF 468 (723)
Q Consensus 409 -------------~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~ 468 (723)
+++..... ..+++|+.....+... . +|...|.+++|+ ++++++++ ||.|++||. ++
T Consensus 300 ~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~-~--~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~ 375 (577)
T 2ymu_A 300 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTL-T--GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NG 375 (577)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEE-C--CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TC
T ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEE-e--CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CC
Confidence 22222221 1358899776655432 2 689999999999 88999999 999999995 67
Q ss_pred cEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 004924 469 QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 547 (723)
Q Consensus 469 ~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd 547 (723)
+.+..+.+|...|++++|+|++ .|++++.|+.|++||. +++.+..+.+|...|.+++|+|+++++++++.|+.|++||
T Consensus 376 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~ 454 (577)
T 2ymu_A 376 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 8888999999999999999999 9999999999999995 5788899999999999999999999999999999999999
Q ss_pred CCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCc
Q 004924 548 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK 626 (723)
Q Consensus 548 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~ 626 (723)
... ..+. ...+|. ..|.+++|+|++++|++ +.|+.|++||. +++++..+. .|...|++++|+|+|+
T Consensus 455 ~~~------~~~~-~~~~~~---~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~--~h~~~v~~l~~s~dg~ 521 (577)
T 2ymu_A 455 RNG------QLLQ-TLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVRGVAFSPDGQ 521 (577)
T ss_dssp TTS------CEEE-EEECCS---SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE--CCSSCEEEEEECTTSS
T ss_pred CCC------CEEE-EEcCCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe--CCCCCEEEEEEcCCCC
Confidence 754 2233 234555 78999999999999998 58999999996 688888876 4789999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEe
Q 004924 627 CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 694 (723)
Q Consensus 627 ~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd 694 (723)
+|++++.||.|++||. +++.+..+.. | ...|+ +++|+| |+++|+|+|.|++|++||
T Consensus 522 ~l~s~~~dg~v~lwd~-~~~~~~~~~~-------h-~~~v~--~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 522 TIASASDDKTVKLWNR-NGQLLQTLTG-------H-SSSVW--GVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CEEEEETTSEEEEECT-TSCEEEEEEC-------C-SSCEE--EEEECT-TSSCEEEEETTSCEEEEC
T ss_pred EEEEEECcCEEEEEeC-CCCEEEEEcC-------C-CCCEE--EEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 9999999999999996 6777777763 2 44455 999999 899999999999999997
No 7
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.2e-40 Score=352.67 Aligned_cols=307 Identities=14% Similarity=0.151 Sum_probs=227.2
Q ss_pred EEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEEC------CCcEEEEeccCCcccccccc
Q 004924 341 VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ------TATHKLWKWQSNKQSLEEEN 414 (723)
Q Consensus 341 a~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~------dg~i~iWd~~~~~~~~g~~~ 414 (723)
+.++.+.....|++.. . .| ..|...|++++|||||++||+|+. |++|++|+..++
T Consensus 20 ~~~~g~~~~~~w~~p~----~------~p-~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~-------- 80 (357)
T 4g56_B 20 FQSNGSSKGSAWGRPV----T------AP-ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEG-------- 80 (357)
T ss_dssp -------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---------
T ss_pred EecCCCccccccCCCC----C------Cc-ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCC--------
Confidence 3334456678888752 1 11 149999999999999999999998 455666654432
Q ss_pred eeeeeEEEecCCCeeeeecc--CCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCcEEE----EEeCCCCCeEEEEE
Q 004924 415 VNMESQLYQPSSKLVMTNDI--AADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLA----TFANPPPIATYFIL 486 (723)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~--~~~h~~~V~~v~~s-~~~l~s~s-dg~I~vwd~~~~~~~~----~~~~~~~~v~~l~~ 486 (723)
....... ..+|...|.+++|+ ++.+++++ ||+|++||+.+++... ...+|...|++++|
T Consensus 81 -------------~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~ 147 (357)
T 4g56_B 81 -------------APNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSV 147 (357)
T ss_dssp ---------------CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEE
T ss_pred -------------CcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEE
Confidence 1111000 01588999999999 66666777 9999999998876543 33488999999999
Q ss_pred cCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeceeeeeeec
Q 004924 487 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT 564 (723)
Q Consensus 487 ~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~-~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~ 564 (723)
+|++ .|++|+.|+.|++||+.+++.+..+.+|...|++++|+|++. .+++++.|++|++||+++++...... ..
T Consensus 148 spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~----~~ 223 (357)
T 4g56_B 148 FSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID----FC 223 (357)
T ss_dssp CSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC----CT
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee----ec
Confidence 9999 999999999999999999999999999999999999999875 78999999999999999864322211 12
Q ss_pred CCCCCCCCeEEEEEccCC-CEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCC-cEEEEEeCCCcEEEEE
Q 004924 565 GLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFD 641 (723)
Q Consensus 565 ~~~~~~~~v~~l~~spdg-~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg-~~l~sgs~dg~I~iwd 641 (723)
.+. ..+.+++|+|++ .++++ +.|+.|++||+++++++..+. .|...|++++|+|++ ++|++|+.||+|+|||
T Consensus 224 ~~~---~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd 298 (357)
T 4g56_B 224 ASD---TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA--VHSQNITGLAYSYHSSPFLASISEDCTVAVLD 298 (357)
T ss_dssp TCC---SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC--CCSSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred ccc---ccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe--ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEE
Confidence 233 679999999985 56777 589999999999999888886 468899999999987 5899999999999999
Q ss_pred CCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 642 TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
+.+++++..+ +| ...|+ +++|+|.++.+|++||.||+|++|++.+..
T Consensus 299 ~~~~~~~~~~--------~H-~~~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 299 ADFSEVFRDL--------SH-RDFVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp TTSCEEEEEC--------CC-SSCEE--EEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CCCCcEeEEC--------CC-CCCEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 9999877654 33 44455 999999778999999999999999997654
No 8
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.9e-39 Score=341.90 Aligned_cols=289 Identities=16% Similarity=0.200 Sum_probs=245.3
Q ss_pred cceeeccCCCC-CCceeeeCCCcccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeC
Q 004924 306 RPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 384 (723)
Q Consensus 306 ~~~~~~~~h~~-v~s~~~~~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fsp 384 (723)
.+..++.||.+ |.++. ++|||+++++++.||+|++||..+ +..... ++. |...|.+++|+|
T Consensus 46 ~~~~~l~gH~~~v~~~~-----------~s~d~~~l~s~s~Dg~v~iWd~~~----~~~~~~-~~~--~~~~v~~~~~s~ 107 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMH-----------WGTDSRLLLSASQDGKLIIWDSYT----TNKVHA-IPL--RSSWVMTCAYAP 107 (340)
T ss_dssp CEEEEECCCSSCEEEEE-----------ECTTSSEEEEEETTTEEEEEETTT----CCEEEE-EEC--SSSCEEEEEECT
T ss_pred hhheeecCCCCceEEEE-----------ECCCCCEEEEEeCCCcEEEEECCC----CCcceE-eec--CCccEEEEEECC
Confidence 44566777776 54433 678999999999999999999874 333222 344 899999999999
Q ss_pred CCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-CCcEEE
Q 004924 385 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISI 462 (723)
Q Consensus 385 dg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-dg~I~v 462 (723)
+|++|++|+.|+.+++|++.+... . . ....... +|...|.++.|+ +..+++++ |++|++
T Consensus 108 ~~~~l~s~~~d~~v~iw~~~~~~~---~--~------------~~~~~~~--~h~~~v~~~~~~~~~~l~s~s~d~~i~~ 168 (340)
T 1got_B 108 SGNYVACGGLDNICSIYNLKTREG---N--V------------RVSRELA--GHTGYLSCCRFLDDNQIVTSSGDTTCAL 168 (340)
T ss_dssp TSSEEEEEETTCEEEEEETTTCSB---S--C------------EEEEEEE--CCSSCEEEEEEEETTEEEEEETTSCEEE
T ss_pred CCCEEEEEeCCCeEEEEECccCCC---c--c------------eeEEEec--CCCccEEEEEECCCCcEEEEECCCcEEE
Confidence 999999999999999999874321 0 0 0111111 699999999999 77888888 999999
Q ss_pred EEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCC
Q 004924 463 FSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA 541 (723)
Q Consensus 463 wd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg 541 (723)
||+.+++.+..+.+|...|.+++|+|++ .+++|+.|+.|++||+++++++..+.+|...|++++|+|+++++++|+.||
T Consensus 169 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~ 248 (340)
T 1got_B 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248 (340)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCceeeceeeeeeec-CCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEE
Q 004924 542 QLCVWDAVGWKKLCSKFLHSFQT-GLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYA 619 (723)
Q Consensus 542 ~I~vwd~~~~~~~~~~~l~~~~~-~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l 619 (723)
+|++||++++.. +..+.. .+. ..|.+++|+|+|+++++ +.|+.|++||+.+++.+..+. +|...|.++
T Consensus 249 ~v~iwd~~~~~~-----~~~~~~~~~~---~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~--~h~~~v~~~ 318 (340)
T 1got_B 249 TCRLFDLRADQE-----LMTYSHDNII---CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA--GHDNRVSCL 318 (340)
T ss_dssp CEEEEETTTTEE-----EEEECCTTCC---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEE
T ss_pred cEEEEECCCCcE-----EEEEccCCcc---cceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEee--cCCCcEEEE
Confidence 999999998543 221211 121 47999999999999998 589999999999999888876 478999999
Q ss_pred EEeeCCcEEEEEeCCCcEEEEE
Q 004924 620 TYSCDGKCIYVSCKSGHVKVFD 641 (723)
Q Consensus 620 ~~spdg~~l~sgs~dg~I~iwd 641 (723)
+|+|+|.+|++|+.||.|++||
T Consensus 319 ~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 319 GVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EECTTSSCEEEEETTSCEEEEC
T ss_pred EEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999999999996
No 9
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.4e-39 Score=340.65 Aligned_cols=292 Identities=18% Similarity=0.205 Sum_probs=248.4
Q ss_pred CcceeeccCCCC-CCceeeeCCCcccccccCCCCCEEEEEeCCCeEEEEeecccCCCCce-eEEecCCCCCCCceEEEEE
Q 004924 305 GRPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIY 382 (723)
Q Consensus 305 ~~~~~~~~~h~~-v~s~~~~~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~-~~~~l~~~~h~~~V~~l~f 382 (723)
+.......+|.+ |.++.|.+. ..+++.++++|+.|++|++|++.. ..+ ....+.+ |...|.+++|
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~-------~~~~~~~l~tgs~D~~v~vW~~~~----~~~~~~~~l~g--h~~~v~~~~~ 88 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTN-------KKENSETVVTGSLDDLVKVWKWRD----ERLDLQWSLEG--HQLGVVSVDI 88 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC--------------CEEEEEETTSCEEEEEEET----TEEEEEEEECC--CSSCEEEEEE
T ss_pred hheeeecccCCCcEEEEEEecC-------CCCCCCEEEEEcCCCCEEEEECCC----CCeeeeeeecc--CCCCEEEEEE
Confidence 344455668888 778777654 345688999999999999999974 322 2334555 9999999999
Q ss_pred eCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCc
Q 004924 383 SHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGK 459 (723)
Q Consensus 383 spdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~ 459 (723)
+|++.++++++.|++|++||+.++.. +.... .|...+.+++|+ +++|++++ +|.
T Consensus 89 ~~~~~~l~s~s~D~~i~lWd~~~~~~---------------------~~~~~--~~~~~~~~~~~spdg~~l~~g~~dg~ 145 (321)
T 3ow8_A 89 SHTLPIAASSSLDAHIRLWDLENGKQ---------------------IKSID--AGPVDAWTLAFSPDSQYLATGTHVGK 145 (321)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTTEE---------------------EEEEE--CCTTCCCCEEECTTSSEEEEECTTSE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCCE---------------------EEEEe--CCCccEEEEEECCCCCEEEEEcCCCc
Confidence 99999999999999999999874322 11111 577888999999 88999999 999
Q ss_pred EEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEe
Q 004924 460 ISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG 538 (723)
Q Consensus 460 I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s 538 (723)
|++|++.+++....+..+...+.+++|+|++ .|++|+.||.|++||+.+++.+..+.+|..+|.+++|+|++++|++|+
T Consensus 146 v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s 225 (321)
T 3ow8_A 146 VNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS 225 (321)
T ss_dssp EEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC
T ss_pred EEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeE
Q 004924 539 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPIT 617 (723)
Q Consensus 539 ~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~ 617 (723)
.|++|++||++++.. +. ...+|. ..|.+++|+|++.+|++ +.|+.|++||+.+++++..+. .|...|.
T Consensus 226 ~dg~i~iwd~~~~~~-----~~-~~~~h~---~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~h~~~v~ 294 (321)
T 3ow8_A 226 DDGYIKIYDVQHANL-----AG-TLSGHA---SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF--DHQDQVW 294 (321)
T ss_dssp TTSCEEEEETTTCCE-----EE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEE
T ss_pred CCCeEEEEECCCcce-----eE-EEcCCC---CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc--CCCCcEE
Confidence 999999999998532 23 344666 78999999999999998 599999999999999998886 4689999
Q ss_pred EEEEeeCCcEEEEEeCCCcEEEEECC
Q 004924 618 YATYSCDGKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 618 ~l~~spdg~~l~sgs~dg~I~iwd~~ 643 (723)
+++|+|++++|++++.||.|++||..
T Consensus 295 ~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 295 GVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999999964
No 10
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.8e-40 Score=347.44 Aligned_cols=288 Identities=15% Similarity=0.163 Sum_probs=230.6
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCC-----CeeeeeccCCCCCCCeEEEEE
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS-----KLVMTNDIAADPKDSISCFAL 447 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~~~h~~~V~~v~~ 447 (723)
|...|.+++|+|||++|++++ |+++++||... ..|+... +...... .|...|.+++|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~--------------~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~ 90 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSL--------------WLFKDPCAAPNEGFCSAGV---QTEAGVADLTW 90 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE--------------EEESSGGGTTCGGGCSEEE---EESSCEEEEEE
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeecee--------------eeeccccccCCcceeeeee---ccCCCEEEEEE
Confidence 778899999999999988877 78889987431 1122110 0000000 36778999999
Q ss_pred e-CCEEEEEe-CCcEEEEEcCCCcEEEE----EeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCC
Q 004924 448 R-GSHLFSAS-GGKISIFSLETFQTLAT----FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN 520 (723)
Q Consensus 448 s-~~~l~s~s-dg~I~vwd~~~~~~~~~----~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~ 520 (723)
+ ++.+++|+ ||+|++||+.+++.... ..+|...|++++|+|+| +|++|+.|++|++||+.+++++..+.+|..
T Consensus 91 s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 91 VGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp ETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred eCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 9 88899999 99999999999876543 34899999999999999 999999999999999999999999999999
Q ss_pred cEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeeceeeeeee-cCCCCCCCCeEEEEEccCC-CEEEE-EcCCcEEEE
Q 004924 521 RITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-TGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVY 596 (723)
Q Consensus 521 ~i~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~-~~~~~~~~~v~~l~~spdg-~~l~~-s~dg~I~vw 596 (723)
.|.+++|+|++ ..+++++.|++|++||+++++... .+. ..+. ..+.+++|+|++ .++++ +.|+.|++|
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~-----~~~~~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~w 242 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPAS-----QIGCSAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLV 242 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEE-----ECC----C---CCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceee-----eeecceee---ccceeeeecCCCCcceEEeccCCcEEEE
Confidence 99999999988 478999999999999999864322 121 1222 578999999964 67777 589999999
Q ss_pred ECCCCceeEEecCCCCCCCeEEEEEeeCC-cEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEec
Q 004924 597 EAPTLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 675 (723)
Q Consensus 597 d~~~~~~~~~~~~~~h~~~v~~l~~spdg-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp 675 (723)
|+++++++..+. .|...|++++|+|++ ++|++|+.||+|+|||+.++++.. +. || .+.|+ +++|+|
T Consensus 243 d~~~~~~~~~~~--~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~-------~H-~~~V~--~v~~sp 309 (344)
T 4gqb_B 243 DTKSTSCVLSSA--VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ-------AH-RDFVR--DATWSP 309 (344)
T ss_dssp ESCC--CCEEEE--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC-------CC-SSCEE--EEEECS
T ss_pred ECCCCcEEEEEc--CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec-------CC-CCCEE--EEEEeC
Confidence 999999998886 478999999999998 589999999999999999997654 32 33 44455 999999
Q ss_pred CCCCEEEEEECCCcEEEEecCCCc
Q 004924 676 LEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 676 ~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
++..+|++||.||+|++|++.+..
T Consensus 310 ~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 310 LNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp SSTTEEEEEETTSCEEEEECCC--
T ss_pred CCCeEEEEEcCCCeEEEEECCCCC
Confidence 444578899999999999997743
No 11
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8.7e-39 Score=336.07 Aligned_cols=294 Identities=16% Similarity=0.189 Sum_probs=244.8
Q ss_pred cCCCCCCCceEEEEEeCCC-CEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEE
Q 004924 368 LPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 446 (723)
Q Consensus 368 l~~~~h~~~V~~l~fspdg-~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 446 (723)
+.+ |.+.|++++|+|++ ++|++|+.|++|++|++....... +..+..+. +|...|.+++
T Consensus 13 l~g--H~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~----------------~~~~~~~~--~h~~~v~~~~ 72 (319)
T 3frx_A 13 LEG--HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF----------------GVPVRSFK--GHSHIVQDCT 72 (319)
T ss_dssp ECC--CSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE----------------EEEEEEEE--CCSSCEEEEE
T ss_pred Ecc--ccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc----------------cccceEEe--CCcccEEEEE
Confidence 555 99999999999965 899999999999999976322100 11111111 7999999999
Q ss_pred Ee--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcE
Q 004924 447 LR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 522 (723)
Q Consensus 447 ~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i 522 (723)
|+ +.++++|+ |++|++||+.+++.+..+.+|...|.+++|+|++ .+++|+.|++|++||++ ++++..+.+|...|
T Consensus 73 ~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v 151 (319)
T 3frx_A 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWV 151 (319)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCE
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcE
Confidence 99 88999999 9999999999999999999999999999999999 99999999999999986 57788899999999
Q ss_pred EEEEEcCC------CCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEE
Q 004924 523 TCLAYSLS------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDV 595 (723)
Q Consensus 523 ~~l~~spd------g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~v 595 (723)
.++.|+|. +..+++++.|+.|++||++++. ... ...+|. ..|.+++|+|+|++|++ +.|+.|++
T Consensus 152 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-----~~~-~~~~h~---~~v~~~~~sp~g~~l~s~~~dg~i~i 222 (319)
T 3frx_A 152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-----IEA-DFIGHN---SNINTLTASPDGTLIASAGKDGEIML 222 (319)
T ss_dssp EEEEECCC------CCEEEEEETTSCEEEEETTTTE-----EEE-EECCCC---SCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred EEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch-----hhe-eecCCC---CcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 99999985 4589999999999999998853 222 244666 79999999999999998 58999999
Q ss_pred EECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEec
Q 004924 596 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 675 (723)
Q Consensus 596 wd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp 675 (723)
||+.+++.+..+.. ...|.+++|+|++.++++++.+ .+++|++..+.....+..........+.. .+.+++|+|
T Consensus 223 wd~~~~~~~~~~~~---~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp 296 (319)
T 3frx_A 223 WNLAAKKAMYTLSA---QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEP--HAVSLAWSA 296 (319)
T ss_dssp EETTTTEEEEEEEC---CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCC--CEEEEEECT
T ss_pred EECCCCcEEEEecC---CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCc--ceeEEEECC
Confidence 99999999888853 5689999999999999988755 59999999988777665322111111122 245999999
Q ss_pred CCCCEEEEEECCCcEEEEecCCC
Q 004924 676 LEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 676 ~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
++++|++|+.||+|+|||+.++
T Consensus 297 -dg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 297 -DGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp -TSSEEEEEETTSCEEEEEEEEC
T ss_pred -CCCEEEEeecCceEEEEEEeec
Confidence 9999999999999999999764
No 12
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.7e-39 Score=335.03 Aligned_cols=281 Identities=17% Similarity=0.271 Sum_probs=239.9
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 450 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 450 (723)
|.+.|.+++|+|+|++|++++.||+|++||+.++.. +..+. .|..+|.+++|+ ++
T Consensus 12 h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~---------------------~~~~~--~~~~~v~~~~~~~~~~ 68 (304)
T 2ynn_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE---------------------VRSIQ--VTETPVRAGKFIARKN 68 (304)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE---------------------EEEEE--CCSSCEEEEEEEGGGT
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce---------------------eEEee--ccCCcEEEEEEeCCCC
Confidence 999999999999999999999999999999874321 11111 688999999999 89
Q ss_pred EEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCC-cEEEEEcCcCCcEEEEEE
Q 004924 451 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAY 527 (723)
Q Consensus 451 ~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~-~~~~~l~~~~~~i~~l~~ 527 (723)
+|++|+ |++|++||+.+++.+..+.+|...|.+++|+|++ .+++|+.|++|++||++++ .....+.+|...|.+++|
T Consensus 69 ~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~ 148 (304)
T 2ynn_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148 (304)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEE
T ss_pred EEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEE
Confidence 999999 9999999999999999999999999999999999 9999999999999999887 455778999999999999
Q ss_pred cC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEcc--CCCEEEE-EcCCcEEEEECCCCce
Q 004924 528 SL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--DQIHLLS-IHEGQIDVYEAPTLNH 603 (723)
Q Consensus 528 sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~sp--dg~~l~~-s~dg~I~vwd~~~~~~ 603 (723)
+| ++..+++|+.|++|++||+.++.. ...+..+|. ..+..+.|+| ++.+|++ +.|+.|++||++++++
T Consensus 149 ~p~~~~~l~sgs~D~~v~iwd~~~~~~-----~~~~~~~~~---~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~ 220 (304)
T 2ynn_A 149 NPKDPSTFASGCLDRTVKVWSLGQSTP-----NFTLTTGQE---RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220 (304)
T ss_dssp CTTCTTEEEEEETTSEEEEEETTCSSC-----SEEEECCCT---TCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE
T ss_pred CCCCCCEEEEEeCCCeEEEEECCCCCc-----cceeccCCc---CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc
Confidence 99 678999999999999999987532 222344454 6789999987 6788888 5999999999999999
Q ss_pred eEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCC-EEE
Q 004924 604 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIA 682 (723)
Q Consensus 604 ~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~-~la 682 (723)
+..+. +|...|.+++|+|++++|++|+.||+|++||..++++...+..+ ...++ +++|+|.++. ++|
T Consensus 221 ~~~~~--~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~--------~~~~~--~~~~~~~~~~~~~a 288 (304)
T 2ynn_A 221 VATLE--GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG--------LERSW--CIATHPTGRKNYIA 288 (304)
T ss_dssp EEEEE--CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS--------SSSEE--EEEECTTCGGGCEE
T ss_pred ceeeC--CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC--------CccEE--EEEECCCCCceEEE
Confidence 98886 47899999999999999999999999999999999999888632 33455 9999994333 577
Q ss_pred EEECCCcEEEEecCC
Q 004924 683 LGLTNGRVHVIEPLE 697 (723)
Q Consensus 683 s~s~Dg~v~iWd~~~ 697 (723)
+|++| .+.+|++.+
T Consensus 289 sg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 289 SGFDN-GFTVLSLGN 302 (304)
T ss_dssp EEETT-EEEEEECC-
T ss_pred EecCC-ceEEEEecc
Confidence 77655 577888765
No 13
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.4e-38 Score=339.69 Aligned_cols=279 Identities=14% Similarity=0.181 Sum_probs=242.1
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 450 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 450 (723)
|.+.|++++|+|+|++|+||+.||+|++||..+... ...+ . .|...|.+++|+ +.
T Consensus 63 H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~-----~~~~----------------~--~~~~~v~~~~~sp~g~ 119 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK-----EHAV----------------T--MPCTWVMACAYAPSGC 119 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----EEEE----------------E--CSSSCCCEEEECTTSS
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc-----ceEE----------------e--cCCCCEEEEEECCCCC
Confidence 999999999999999999999999999999764322 1111 1 478889999999 89
Q ss_pred EEEEEe-CCcEEEEEcCCC------cEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcE
Q 004924 451 HLFSAS-GGKISIFSLETF------QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 522 (723)
Q Consensus 451 ~l~s~s-dg~I~vwd~~~~------~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i 522 (723)
++++|+ |+.+++|++... .....+.+|...|.+++|+|++ .+++|+.|++|++||+.+++.+..+.+|...|
T Consensus 120 ~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v 199 (354)
T 2pbi_B 120 AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADV 199 (354)
T ss_dssp EEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred EEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCe
Confidence 999999 999999998643 3456677899999999999999 99999999999999999999999999999999
Q ss_pred EEEEEcC--CCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECC
Q 004924 523 TCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP 599 (723)
Q Consensus 523 ~~l~~sp--dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~ 599 (723)
.++.|+| +|+.+++|+.||+|++||++++.. +. ...+|. ..|.+++|+|++.+|++ +.|++|++||++
T Consensus 200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~-----~~-~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~ 270 (354)
T 2pbi_B 200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC-----VQ-AFETHE---SDVNSVRYYPSGDAFASGSDDATCRLYDLR 270 (354)
T ss_dssp EEEEECCCSSCCEEEEEETTSCEEEEETTTCCE-----EE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE-----EE-EecCCC---CCeEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 9999988 578999999999999999998643 33 234565 78999999999999998 589999999999
Q ss_pred CCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCC
Q 004924 600 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 679 (723)
Q Consensus 600 ~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~ 679 (723)
+++.+..+....+...+.+++|+|+|++|++|+.|+.|++||+.+++.+..+.. | ...|. +++|+| ++.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~-------h-~~~v~--~l~~sp-dg~ 339 (354)
T 2pbi_B 271 ADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG-------H-ENRVS--TLRVSP-DGT 339 (354)
T ss_dssp TTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECC-------C-SSCEE--EEEECT-TSS
T ss_pred CCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEEC-------C-CCcEE--EEEECC-CCC
Confidence 988877776544456899999999999999999999999999999998877753 2 44455 999999 899
Q ss_pred EEEEEECCCcEEEEe
Q 004924 680 RIALGLTNGRVHVIE 694 (723)
Q Consensus 680 ~las~s~Dg~v~iWd 694 (723)
+|++|+.||+|+||+
T Consensus 340 ~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 340 AFCSGSWDHTLRVWA 354 (354)
T ss_dssp CEEEEETTSEEEEEC
T ss_pred EEEEEcCCCCEEecC
Confidence 999999999999996
No 14
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=339.13 Aligned_cols=300 Identities=15% Similarity=0.171 Sum_probs=237.3
Q ss_pred cCCCCCCC-ceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEE
Q 004924 368 LPDNSFGG-RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 446 (723)
Q Consensus 368 l~~~~h~~-~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 446 (723)
+++ |.. .|++++|+|+|++||+|+.|++|+||++.++.. . .......+|...|.+++
T Consensus 11 ~~~--h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~-----~---------------~~~~~~~~h~~~v~~~~ 68 (345)
T 3fm0_A 11 VPA--HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW-----I---------------CKSVLSEGHQRTVRKVA 68 (345)
T ss_dssp ECC--STTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE-----E---------------EEEEECSSCSSCEEEEE
T ss_pred ecC--CCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc-----e---------------eeeeeccccCCcEEEEE
Confidence 555 877 999999999999999999999999999764211 0 00011126999999999
Q ss_pred Ee--CCEEEEEe-CCcEEEEEcCCC--cEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCc---EEEEEcC
Q 004924 447 LR--GSHLFSAS-GGKISIFSLETF--QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK---TKAKLKG 517 (723)
Q Consensus 447 ~s--~~~l~s~s-dg~I~vwd~~~~--~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~---~~~~l~~ 517 (723)
|+ +++|++|+ |++|++|++.++ +++..+.+|...|.+++|+|++ .|++|+.|+.|++||+.++. ++..+.+
T Consensus 69 ~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 148 (345)
T 3fm0_A 69 WSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS 148 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECC
T ss_pred ECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecC
Confidence 99 88999999 999999999876 4577888999999999999999 99999999999999998763 4667889
Q ss_pred cCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEE
Q 004924 518 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVY 596 (723)
Q Consensus 518 ~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vw 596 (723)
|...|.+++|+|++.+|++++.|++|++||..++... ... ...+|. ..|.+++|+|+|++|++ +.|++|++|
T Consensus 149 h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~---~~~-~~~~h~---~~v~~l~~sp~g~~l~s~s~D~~v~iW 221 (345)
T 3fm0_A 149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWV---CCA-TLEGHE---STVWSLAFDPSGQRLASCSDDRTVRIW 221 (345)
T ss_dssp CCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEE---EEE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEE---EEE-EecCCC---CceEEEEECCCCCEEEEEeCCCeEEEe
Confidence 9999999999999999999999999999999875322 222 344666 79999999999999998 599999999
Q ss_pred ECCCC---------------ceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcE----EEEeeccccc
Q 004924 597 EAPTL---------------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL----RCQINLTAYA 657 (723)
Q Consensus 597 d~~~~---------------~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~----~~~~~~~~~~ 657 (723)
|.... +++..+.. .|...|.+++|+|++..|++++.|+.|++|+...+.. ...+..+ .
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~--~ 298 (345)
T 3fm0_A 222 RQYLPGNEQGVACSGSDPSWKCICTLSG-FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAH--L 298 (345)
T ss_dssp EEECTTCTTCCCCC---CEEEEEEEECS-SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEE--E
T ss_pred ccccCCCCccceeeccCCccceeEEecC-CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEee--e
Confidence 96321 22333332 3788999999999999999999999999999876531 1111111 1
Q ss_pred CCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCceee
Q 004924 658 QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW 702 (723)
Q Consensus 658 ~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~w 702 (723)
..+| ...|+ +++|+|+++.+||+||.||+|++|++.+++...
T Consensus 299 ~~~h-~~~V~--~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 299 HQAH-SQDVN--CVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp TTSS-SSCEE--EEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred cccc-cCcEe--EeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 1233 44455 999999434699999999999999998877543
No 15
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.6e-39 Score=348.81 Aligned_cols=379 Identities=18% Similarity=0.263 Sum_probs=245.7
Q ss_pred cccchHHHHHHHHHHhhhhhhHHHHHHHhhhcccccc--chhhHHhhhcCChHHHHHHHhhccccccCcchhHHHHHHHH
Q 004924 124 EKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD--INYFREYITSGEWDNAEKYLSAFTNMNDNTYSAKMFSQIQR 201 (723)
Q Consensus 124 ~~~~~~evirlI~q~L~e~G~~~s~~~L~~Es~i~~~--~~~l~~~i~~G~w~~~~~~l~~l~~~~~~~~~~~~~~~l~~ 201 (723)
...+++|++|+|+|||+|+||.+++.+|++|+++.++ ...+...++++.|+.++++-+.+.. + +
T Consensus 4 ~~~q~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~-------------~-~ 69 (410)
T 1vyh_C 4 SQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKVME-------------L-E 69 (410)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCcchhhhhhchhhhhhhheeeHHHHHHH-------------H-H
Confidence 4578999999999999999999999999999998875 4566777888888887775433200 0 0
Q ss_pred HHHHHHHhhcCCCccchhhhhhHHHHHHHHHhhCcccccccCCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCccc
Q 004924 202 QKYLEAVDRQQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNETISL 281 (723)
Q Consensus 202 q~~le~l~~~e~~p~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~~s~ 281 (723)
.+.-+. .+.+.. ..|. + .-.....| .+
T Consensus 70 ~~~~~~-------------------------------~~~~~~-~~~~-~---~~~~~~~~--------~~--------- 96 (410)
T 1vyh_C 70 SKLNEA-------------------------------KEEFTS-GGPL-G---QKRDPKEW--------IP--------- 96 (410)
T ss_dssp ----------------------------------------------------------CCC--------CC---------
T ss_pred HHHHHH-------------------------------HHHHhc-cCCc-c---ccCCcccc--------cc---------
Confidence 000000 000000 0000 0 00000000 00
Q ss_pred cCCCcccccccccccccCCCCCCCcceeeccCCCC-CCceeeeCCCcccccccCCCCCEEEEEeCCCeEEEEeecccCCC
Q 004924 282 KDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEP 360 (723)
Q Consensus 282 ~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~h~~-v~s~~~~~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~ 360 (723)
.......+.||.+ |.++. ++|+++++++|+.||+|++||+.+
T Consensus 97 ----------------------~~~~~~~l~gh~~~V~~~~-----------~~p~~~~l~s~s~Dg~i~vwd~~~---- 139 (410)
T 1vyh_C 97 ----------------------RPPEKYALSGHRSPVTRVI-----------FHPVFSVMVSASEDATIKVWDYET---- 139 (410)
T ss_dssp ----------------------CSSCSCEEECCSSCEEEEE-----------ECSSSSEEEEEESSSCEEEEETTT----
T ss_pred ----------------------CCCceEeecccCCcEEEEE-----------EcCCCCEEEEEeCCCeEEEEECCC----
Confidence 0111223445555 44433 778899999999999999999984
Q ss_pred CceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCC
Q 004924 361 SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD 440 (723)
Q Consensus 361 ~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 440 (723)
+.+... +.+ |.+.|.+++|+|+|++|++|+.|++|++||+.+.. ++..+. +|..
T Consensus 140 ~~~~~~-l~~--h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~---------------------~~~~~~--~h~~ 193 (410)
T 1vyh_C 140 GDFERT-LKG--HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE---------------------CIRTMH--GHDH 193 (410)
T ss_dssp CCCCEE-ECC--CSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC---------------------EEECCC--CCSS
T ss_pred CcEEEE-Eec--cCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---------------------eeEEEc--CCCC
Confidence 444333 454 99999999999999999999999999999976422 222222 6999
Q ss_pred CeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEc
Q 004924 441 SISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK 516 (723)
Q Consensus 441 ~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~ 516 (723)
.|.+++|+ ++++++|+ |++|++||+.++.++..+.+|...|.++.++|++ .+++|+.|++|++||+.++++...+.
T Consensus 194 ~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~ 273 (410)
T 1vyh_C 194 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 273 (410)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEec
Confidence 99999999 88999999 9999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CcCCcEEEEEEcCC--------------------CCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEE
Q 004924 517 GHQNRITCLAYSLS--------------------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 576 (723)
Q Consensus 517 ~~~~~i~~l~~spd--------------------g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l 576 (723)
+|...|.+++|+|+ |.++++|+.|++|++||++++. .+. ...+|. ..|.++
T Consensus 274 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~-----~~~-~~~~h~---~~v~~v 344 (410)
T 1vyh_C 274 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-----CLM-TLVGHD---NWVRGV 344 (410)
T ss_dssp CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE-----EEE-EEECCS---SCEEEE
T ss_pred CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc-----eEE-EEECCC---CcEEEE
Confidence 99999999999996 6789999999999999999863 344 234566 789999
Q ss_pred EEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECC
Q 004924 577 QFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 577 ~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~ 643 (723)
+|+|+|++|++ +.|+.|++||+.+++++..+. .|...|++++|+|++.+|++|+.||+|++|+.+
T Consensus 345 ~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 345 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN--AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EECSSSSCEEEEETTTEEEEECCTTSCCCEEEE--CCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc--CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 99999999998 589999999999999888886 478899999999999999999999999999863
No 16
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.1e-37 Score=326.08 Aligned_cols=287 Identities=19% Similarity=0.238 Sum_probs=245.0
Q ss_pred EecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEE
Q 004924 366 LLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF 445 (723)
Q Consensus 366 ~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 445 (723)
..+.+ |...|.+++|+|+|++|++|+.||.|++|+..++.. ..... +|...|.++
T Consensus 17 ~~~~g--h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~---------------------~~~~~--~h~~~v~~~ 71 (312)
T 4ery_A 17 FTLAG--HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---------------------EKTIS--GHKLGISDV 71 (312)
T ss_dssp EEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------------------EEEEC--CCSSCEEEE
T ss_pred EEEcc--cCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc---------------------chhhc--cCCCceEEE
Confidence 33555 999999999999999999999999999999764221 11111 699999999
Q ss_pred EEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCc
Q 004924 446 ALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 521 (723)
Q Consensus 446 ~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~ 521 (723)
+|+ +++|++++ ||.|++||+.+++.+..+.+|...|.+++|+|++ .+++|+.|+.|++||+++++.+..+..|..+
T Consensus 72 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 151 (312)
T 4ery_A 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151 (312)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred EEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCc
Confidence 999 88999999 9999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCC
Q 004924 522 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT 600 (723)
Q Consensus 522 i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~ 600 (723)
|.+++|+|+++++++++.||.|++||+++++. +..+...+. ..+..++|+|+++++++ +.|+.|++||+++
T Consensus 152 v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 223 (312)
T 4ery_A 152 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-----LKTLIDDDN---PPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223 (312)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----EEEECCSSC---CCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-----eeEEeccCC---CceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 99999999999999999999999999998643 332333443 68999999999999998 5899999999999
Q ss_pred CceeEEecCCCCCCCeEEEEEe-eCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCC
Q 004924 601 LNHTSQLVPDKMDLPITYATYS-CDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 679 (723)
Q Consensus 601 ~~~~~~~~~~~h~~~v~~l~~s-pdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~ 679 (723)
++.+..+..+..........++ +++.+|++|+.||.|++||+.+++.+..+.. | ...+ .+++|+| ++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-------h-~~~v--~~~~~~p-~~~ 292 (312)
T 4ery_A 224 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-------H-TDVV--ISTACHP-TEN 292 (312)
T ss_dssp TEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECC-------C-SSCE--EEEEECS-SSS
T ss_pred CcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhc-------c-CCcE--EEEeecC-cCC
Confidence 9998888653322223334444 6789999999999999999999999888863 2 3344 4999999 899
Q ss_pred EEEEEE--CCCcEEEEecC
Q 004924 680 RIALGL--TNGRVHVIEPL 696 (723)
Q Consensus 680 ~las~s--~Dg~v~iWd~~ 696 (723)
++++++ .|++|++|+..
T Consensus 293 ~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 293 IIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEEEECTTTCCEEEEECC
T ss_pred ceEEEEccCCccEEEecCC
Confidence 999997 69999999974
No 17
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.6e-38 Score=329.38 Aligned_cols=291 Identities=15% Similarity=0.230 Sum_probs=240.5
Q ss_pred eeeccCCCC-CCceeeeCCCcccccccCCC-CCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCC
Q 004924 308 LDASSGDDS-NDSSCFNDNNQSRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS 385 (723)
Q Consensus 308 ~~~~~~h~~-v~s~~~~~~~~~~~~~~spd-g~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspd 385 (723)
..++.||.+ |.++. ++|+ ++++++++.|++|++|++.............+.+ |...|.+++|+|+
T Consensus 10 ~~~l~gH~~~V~~l~-----------~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~--h~~~v~~~~~s~d 76 (319)
T 3frx_A 10 RGTLEGHNGWVTSLA-----------TSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG--HSHIVQDCTLTAD 76 (319)
T ss_dssp EEEECCCSSCEEEEE-----------ECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEEC--CSSCEEEEEECTT
T ss_pred EEEEccccceEEEEE-----------ccCCCccEEEEecCCccEEEecCCCCCccccccceEEeC--CcccEEEEEECCC
Confidence 345677877 55544 4454 4789999999999999987421111111223454 9999999999999
Q ss_pred CCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEE
Q 004924 386 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISI 462 (723)
Q Consensus 386 g~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~v 462 (723)
|++|++|+.|++|++||+.++.. +..+. +|...|.+++|+ +.++++|+ |++|++
T Consensus 77 g~~l~s~s~D~~v~~wd~~~~~~---------------------~~~~~--~h~~~v~~~~~~~~~~~l~s~s~D~~i~v 133 (319)
T 3frx_A 77 GAYALSASWDKTLRLWDVATGET---------------------YQRFV--GHKSDVMSVDIDKKASMIISGSRDKTIKV 133 (319)
T ss_dssp SSEEEEEETTSEEEEEETTTTEE---------------------EEEEE--CCSSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCe---------------------eEEEc--cCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 99999999999999999874321 11111 799999999999 88999999 999999
Q ss_pred EEcCCCcEEEEEeCCCCCeEEEEEcCC------C-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEE
Q 004924 463 FSLETFQTLATFANPPPIATYFILLPQ------D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV 535 (723)
Q Consensus 463 wd~~~~~~~~~~~~~~~~v~~l~~~p~------~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~ 535 (723)
||+. ++++..+.+|...|.++.|+|. + .+++|+.|+.|++||+++++....+.+|...|.+++|+|+|++|+
T Consensus 134 wd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~ 212 (319)
T 3frx_A 134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIA 212 (319)
T ss_dssp EETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEE
T ss_pred EECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEE
Confidence 9996 6778888999999999999984 5 799999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCC-----
Q 004924 536 SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD----- 610 (723)
Q Consensus 536 s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~----- 610 (723)
+++.||+|++||+.+++ .+.++. .+ ..|.+++|+|++.+++++.++.+++|++..+..+..+...
T Consensus 213 s~~~dg~i~iwd~~~~~-----~~~~~~-~~----~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 282 (319)
T 3frx_A 213 SAGKDGEIMLWNLAAKK-----AMYTLS-AQ----DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYS 282 (319)
T ss_dssp EEETTCEEEEEETTTTE-----EEEEEE-CC----SCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCC
T ss_pred EEeCCCeEEEEECCCCc-----EEEEec-CC----CcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccc
Confidence 99999999999999853 333232 23 6899999999999999987888999999887776665432
Q ss_pred -CCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCC
Q 004924 611 -KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 645 (723)
Q Consensus 611 -~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~ 645 (723)
.|...+.+++|+|||++|++|+.||.|++||+.++
T Consensus 283 ~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 283 KAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp GGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred cCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 23567999999999999999999999999998764
No 18
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=7.1e-39 Score=345.40 Aligned_cols=292 Identities=15% Similarity=0.210 Sum_probs=244.6
Q ss_pred cCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEE
Q 004924 368 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 447 (723)
Q Consensus 368 l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 447 (723)
+.+ |.+.|++++|+|+|++|+||+.||+|+|||..++.. ...+. .|...|.+++|
T Consensus 62 l~g--H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~---------------------~~~~~--~h~~~v~~~~~ 116 (380)
T 3iz6_a 62 LQG--HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK---------------------THAIK--LHCPWVMECAF 116 (380)
T ss_dssp ECC--CSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE---------------------EEEEE--CCCTTCCCCEE
T ss_pred ccc--cccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc---------------------ceEEe--cCCCCEEEEEE
Confidence 555 999999999999999999999999999999764321 11111 68999999999
Q ss_pred e--CCEEEEEe-CCcEEEEEcCCCc-------EEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEEEEE
Q 004924 448 R--GSHLFSAS-GGKISIFSLETFQ-------TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL 515 (723)
Q Consensus 448 s--~~~l~s~s-dg~I~vwd~~~~~-------~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~~l 515 (723)
+ ++++++|+ |+.|++||+.+.. ....+.+|.+.+.++.|+|++ .+++|+.|++|++||+.+++.+..+
T Consensus 117 s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~ 196 (380)
T 3iz6_a 117 APNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIF 196 (380)
T ss_dssp CTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEE
T ss_pred CCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEe
Confidence 9 89999999 9999999986532 345677999999999999986 8999999999999999999999887
Q ss_pred -----cCcCCcEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-
Q 004924 516 -----KGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI- 588 (723)
Q Consensus 516 -----~~~~~~i~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s- 588 (723)
.+|...|.++.|++ ++.++++|+.|++|++||++... ..+. ...+|. ..|.+++|+|++.+|+++
T Consensus 197 ~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~----~~~~-~~~~h~---~~v~~v~~~p~~~~l~s~s 268 (380)
T 3iz6_a 197 GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS----RAVR-TYHGHE---GDINSVKFFPDGQRFGTGS 268 (380)
T ss_dssp CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC----CCCE-EECCCS---SCCCEEEECTTSSEEEEEC
T ss_pred ecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC----cceE-EECCcC---CCeEEEEEecCCCeEEEEc
Confidence 67999999999987 88999999999999999998521 2233 345676 789999999999999994
Q ss_pred cCCcEEEEECCCCceeEEecCCC-----CCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCcc
Q 004924 589 HEGQIDVYEAPTLNHTSQLVPDK-----MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS 663 (723)
Q Consensus 589 ~dg~I~vwd~~~~~~~~~~~~~~-----h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~ 663 (723)
.|++|++||+++++.+..+.... +...|++++|+|+|++|++|+.||.|++||..+++....+... ..+ |.
T Consensus 269 ~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~---~~~-h~ 344 (380)
T 3iz6_a 269 DDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL---QNS-HE 344 (380)
T ss_dssp SSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCS---CSS-CC
T ss_pred CCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecc---cCC-CC
Confidence 89999999999999888775421 1235899999999999999999999999999999887766321 113 34
Q ss_pred CccceEEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 664 LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 664 ~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
+.|. +++|+| ++.+|++||.||+|+||++...+
T Consensus 345 ~~v~--~l~~s~-dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 345 GRIS--CLGLSS-DGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CCCC--EEEECS-SSSEEEEECTTSCEEEEECCSSS
T ss_pred CceE--EEEECC-CCCEEEEeeCCCCEEEEecCCCc
Confidence 5566 999999 89999999999999999997654
No 19
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.2e-37 Score=332.26 Aligned_cols=291 Identities=14% Similarity=0.136 Sum_probs=242.8
Q ss_pred cceeeccCCCC-CCceeeeCCCcccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeC
Q 004924 306 RPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 384 (723)
Q Consensus 306 ~~~~~~~~h~~-v~s~~~~~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fsp 384 (723)
....++.||.+ |.++. ++|+|+++++++.|++|++||... +..... +.. |...|.+++|+|
T Consensus 55 ~~~~~l~gH~~~V~~~~-----------~s~d~~~l~s~s~Dg~v~vWd~~~----~~~~~~-~~~--~~~~v~~~~~sp 116 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMD-----------WCKDKRRIVSSSQDGKVIVWDSFT----TNKEHA-VTM--PCTWVMACAYAP 116 (354)
T ss_dssp CEEEEEECCSSCEEEEE-----------ECTTSSEEEEEETTSEEEEEETTT----CCEEEE-EEC--SSSCCCEEEECT
T ss_pred EEEEEecCCCCeEEEEE-----------ECCCCCEEEEEeCCCeEEEEECCC----CCcceE-Eec--CCCCEEEEEECC
Confidence 34566777877 55543 678899999999999999999874 333222 333 888999999999
Q ss_pred CCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEE
Q 004924 385 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKIS 461 (723)
Q Consensus 385 dg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~ 461 (723)
+|.++++|+.|+.+++|++..... .+.... ...+. +|...|.+++|+ +..+++++ |++|+
T Consensus 117 ~g~~lasg~~d~~i~v~~~~~~~~-~~~~~~-----------~~~~~-----~h~~~v~~~~~~~~~~~l~t~s~D~~v~ 179 (354)
T 2pbi_B 117 SGCAIACGGLDNKCSVYPLTFDKN-ENMAAK-----------KKSVA-----MHTNYLSACSFTNSDMQILTASGDGTCA 179 (354)
T ss_dssp TSSEEEEESTTSEEEEEECCCCTT-CCSGGG-----------CEEEE-----ECSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred CCCEEEEeeCCCCEEEEEEecccc-cccccc-----------ceeee-----ccCCcEEEEEEeCCCCEEEEEeCCCcEE
Confidence 999999999999999999864321 000000 00111 599999999999 77999999 99999
Q ss_pred EEEcCCCcEEEEEeCCCCCeEEEEEcC--CC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEe
Q 004924 462 IFSLETFQTLATFANPPPIATYFILLP--QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG 538 (723)
Q Consensus 462 vwd~~~~~~~~~~~~~~~~v~~l~~~p--~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s 538 (723)
+||+.+++.+..+.+|...|.+++|+| ++ .|++|+.||.|++||+++++++..+.+|...|++++|+|++..+++|+
T Consensus 180 lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s 259 (354)
T 2pbi_B 180 LWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS 259 (354)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEe
Confidence 999999999999999999999999987 46 999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCceeeceeeeeeec-CCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCe
Q 004924 539 ADAQLCVWDAVGWKKLCSKFLHSFQT-GLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPI 616 (723)
Q Consensus 539 ~dg~I~vwd~~~~~~~~~~~l~~~~~-~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v 616 (723)
.|++|++||++++.. +..+.. .+. ..+.+++|+|+|.++++ +.|+.|++||+.+++.+..+. +|...|
T Consensus 260 ~D~~v~lwd~~~~~~-----~~~~~~~~~~---~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~--~h~~~v 329 (354)
T 2pbi_B 260 DDATCRLYDLRADRE-----VAIYSKESII---FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF--GHENRV 329 (354)
T ss_dssp TTSCEEEEETTTTEE-----EEEECCTTCC---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC--CCSSCE
T ss_pred CCCeEEEEECCCCcE-----EEEEcCCCcc---cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE--CCCCcE
Confidence 999999999998532 221111 111 47899999999999998 589999999999999888775 579999
Q ss_pred EEEEEeeCCcEEEEEeCCCcEEEEE
Q 004924 617 TYATYSCDGKCIYVSCKSGHVKVFD 641 (723)
Q Consensus 617 ~~l~~spdg~~l~sgs~dg~I~iwd 641 (723)
.+++|+|+|++|++|+.||+|++|+
T Consensus 330 ~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 330 STLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999999999999996
No 20
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.6e-37 Score=327.14 Aligned_cols=315 Identities=15% Similarity=0.175 Sum_probs=260.8
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccc
Q 004924 331 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 410 (723)
Q Consensus 331 ~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~ 410 (723)
..++|||++++++..++.+..|.... ........+ |...|.+++|+|+|+++++++ ||.|++|++.+...
T Consensus 15 ~~~s~dg~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~-- 84 (337)
T 1gxr_A 15 FHVTADGQMQPVPFPPDALIGPGIPR-----HARQINTLN--HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN-- 84 (337)
T ss_dssp EEECSSSCEEECCCCTTSSSSTTCCS-----EEEEEEEEC--CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC--
T ss_pred EEECCCCCEEEeecCCCcEeccccCC-----ccccceecc--CCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc--
Confidence 34899999999998888777775542 122222223 999999999999999999998 99999999875332
Q ss_pred cccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCc--EEEEEeCCCCCeEEEE
Q 004924 411 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFI 485 (723)
Q Consensus 411 g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~--~~~~~~~~~~~v~~l~ 485 (723)
.... ......+|...|.+++|+ ++++++++ ||.|++||+.+++ ....+..|...+.+++
T Consensus 85 ---~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~ 148 (337)
T 1gxr_A 85 ---KSPV-------------SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148 (337)
T ss_dssp ---CSCS-------------EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEE
T ss_pred ---eeee-------------ecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEE
Confidence 0000 000011588999999999 88999999 9999999999887 5667788999999999
Q ss_pred EcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeec
Q 004924 486 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT 564 (723)
Q Consensus 486 ~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~ 564 (723)
|+|++ .+++++.||.|++||+++++.+..+.+|...|.+++|+|+++.+++++.||.|++||+++++. +..+.
T Consensus 149 ~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-----~~~~~- 222 (337)
T 1gxr_A 149 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ-----LQQHD- 222 (337)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----EEEEE-
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce-----Eeeec-
Confidence 99999 999999999999999999999999999999999999999999999999999999999998643 22222
Q ss_pred CCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECC
Q 004924 565 GLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 565 ~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~ 643 (723)
+. ..+.+++|+|+++++++ +.++.|++||+++++.. .+. .|...|.+++|+|++++|++++.||.|++|++.
T Consensus 223 -~~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 223 -FT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp -CS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred -CC---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEc--CCccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 22 68999999999999998 58999999999888764 332 568999999999999999999999999999999
Q ss_pred CCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecC
Q 004924 644 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 644 ~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~ 696 (723)
+++...... +... +.+++|+| ++++|++++.||.|++|++.
T Consensus 296 ~~~~~~~~~---------~~~~--v~~~~~s~-~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 296 YGASIFQSK---------ESSS--VLSCDISV-DDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp TCCEEEEEE---------CSSC--EEEEEECT-TSCEEEEEETTSCEEEEEEE
T ss_pred CCeEEEEec---------CCCc--EEEEEECC-CCCEEEEecCCCeEEEEEEe
Confidence 998775542 1333 44999999 89999999999999999973
No 21
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=5.9e-37 Score=348.80 Aligned_cols=332 Identities=17% Similarity=0.226 Sum_probs=274.1
Q ss_pred ccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcc-
Q 004924 330 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ- 408 (723)
Q Consensus 330 ~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~- 408 (723)
...++|+|+++++++.|+.|++|+.. ...... +.+ |...|.+++|+|+|++|++++.|+.|++|+......
T Consensus 185 ~~~~~~~~~~l~~~~~d~~v~~w~~~----~~~~~~--~~~--~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~ 256 (577)
T 2ymu_A 185 GVAFSPDGQTIASASDDKTVKLWNRN----GQLLQT--LTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 256 (577)
T ss_dssp EEEECTTSSCEEEEETTSEEEEECTT----SCEEEE--EEC--CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE
T ss_pred eeeecCCCCEEEEEcCCCEEEEEeCC----CcEEEE--Eec--CCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEE
Confidence 34488999999999999999999965 233332 333 999999999999999999999999999999654322
Q ss_pred ---------------ccccccee----eeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcC
Q 004924 409 ---------------SLEEENVN----MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE 466 (723)
Q Consensus 409 ---------------~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~ 466 (723)
+++..... ..+++|+... ....... +|...|.+++|+ +..+++++ ||+|++||..
T Consensus 257 ~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-~~~~~~~--~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~ 333 (577)
T 2ymu_A 257 TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-QLLQTLT--GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 333 (577)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-cEEEEEe--cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 12222211 1357898654 4444333 799999999999 88999999 9999999975
Q ss_pred CCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 004924 467 TFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV 545 (723)
Q Consensus 467 ~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~v 545 (723)
+..+..+.+|...+.+++|+|++ .+++|+.||.|++||. +++.+..+.+|...|.+++|+|+|++|++++.|+.|++
T Consensus 334 -~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~ 411 (577)
T 2ymu_A 334 -GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 411 (577)
T ss_dssp -SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred -CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEE
Confidence 55667788999999999999999 9999999999999995 57888999999999999999999999999999999999
Q ss_pred EeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeC
Q 004924 546 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 624 (723)
Q Consensus 546 wd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spd 624 (723)
||... ..+. ...+|. ..|.+++|+|+++++++ +.|+.|++||. +++.+..+. .|...|.+++|+|+
T Consensus 412 ~~~~~------~~~~-~~~~~~---~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~--~~~~~v~~~~~spd 478 (577)
T 2ymu_A 412 WNRNG------QLLQ-TLTGHS---SSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVRGVAFSPD 478 (577)
T ss_dssp ECTTC------CEEE-EEECCS---SCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEE--CCSSCEEEEEECTT
T ss_pred EeCCC------CEEE-EecCCC---CCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEc--CCCCCEEEEEEcCC
Confidence 99754 2333 234565 78999999999999998 58999999997 567777775 46899999999999
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCce
Q 004924 625 GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 700 (723)
Q Consensus 625 g~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~ 700 (723)
+++|++++.|+.|++||. +++.+..+.. | ...|. +++|+| ++++||+++.||.|+|||. +++.
T Consensus 479 ~~~las~~~d~~i~iw~~-~~~~~~~~~~-------h-~~~v~--~l~~s~-dg~~l~s~~~dg~v~lwd~-~~~~ 541 (577)
T 2ymu_A 479 GQTIASASDDKTVKLWNR-NGQLLQTLTG-------H-SSSVR--GVAFSP-DGQTIASASDDKTVKLWNR-NGQL 541 (577)
T ss_dssp SCEEEEEETTSEEEEEET-TSCEEEEEEC-------C-SSCEE--EEEECT-TSSCEEEEETTSEEEEECT-TSCE
T ss_pred CCEEEEEeCCCEEEEEcC-CCCEEEEEeC-------C-CCCEE--EEEEcC-CCCEEEEEECcCEEEEEeC-CCCE
Confidence 999999999999999995 6777777763 2 34444 999999 8999999999999999996 4443
No 22
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.5e-38 Score=342.89 Aligned_cols=305 Identities=13% Similarity=0.100 Sum_probs=246.5
Q ss_pred CcceeeccCCCC-CCceeeeCCCcccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEe
Q 004924 305 GRPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS 383 (723)
Q Consensus 305 ~~~~~~~~~h~~-v~s~~~~~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fs 383 (723)
..+.+++.||.+ |.++. ++|+|+++++|+.|++|++||..+ +..... +.. |...|.+++|+
T Consensus 56 ~~~~~~l~gH~~~V~~~~-----------~sp~~~~l~s~s~D~~v~iWd~~~----~~~~~~-~~~--h~~~v~~~~~s 117 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLD-----------WTPEKNWIVSASQDGRLIVWNALT----SQKTHA-IKL--HCPWVMECAFA 117 (380)
T ss_dssp CEEEEEECCCSSCEEEEE-----------ECTTSSCEEEEETTSEEEEEETTT----TEEEEE-EEC--CCTTCCCCEEC
T ss_pred eEEeecccccccEEEEEE-----------EcCCCCEEEEEeCCCeEEEEECCC----CccceE-Eec--CCCCEEEEEEC
Confidence 445667778877 55543 678899999999999999999874 333322 444 99999999999
Q ss_pred CCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCc
Q 004924 384 HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGK 459 (723)
Q Consensus 384 pdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~ 459 (723)
|+|++|++|+.|+.+++|++.+.....+... ... ...+|.+.|.++.|. +..|++|+ |++
T Consensus 118 ~~g~~las~~~d~~v~iw~~~~~~~~~~~~~--------------~~~--~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~ 181 (380)
T 3iz6_a 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMP--------------VSR--VLTGHKGYASSCQYVPDQETRLITGSGDQT 181 (380)
T ss_dssp TTSSEEEECCSSSCCEEEECCCCSSCCCSST--------------TCC--BCCCCSSCCCCCBCCSSSSSCEEEECTTSC
T ss_pred CCCCEEEEeeCCCcEEEEECCCCccccCCcc--------------cee--eccCCCcceEEEEEecCCCCEEEEECCCCc
Confidence 9999999999999999999875322111100 001 112799999999998 45799999 999
Q ss_pred EEEEEcCCCcEEEEE-----eCCCCCeEEEEEcC-CC-eEEEEECCCcEEEEeCC-CCcEEEEEcCcCCcEEEEEEcCCC
Q 004924 460 ISIFSLETFQTLATF-----ANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPC-TKKTKAKLKGHQNRITCLAYSLSL 531 (723)
Q Consensus 460 I~vwd~~~~~~~~~~-----~~~~~~v~~l~~~p-~~-~l~sgs~dg~I~iwd~~-~~~~~~~l~~~~~~i~~l~~spdg 531 (723)
|++||+.+++.+..+ .+|...|.+++|++ ++ .+++|+.|+.|++||++ +++.+..+.+|...|++++|+|++
T Consensus 182 i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~ 261 (380)
T 3iz6_a 182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG 261 (380)
T ss_dssp EEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS
T ss_pred EEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC
Confidence 999999999998887 57889999999987 66 99999999999999998 557888999999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeceeeeee-ecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecC
Q 004924 532 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSF-QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVP 609 (723)
Q Consensus 532 ~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~-~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~ 609 (723)
.+|++|+.||+|++||++++........... ...+. ..|.+++|+|+|++++++ .||.|++||+.+++.+..+..
T Consensus 262 ~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 338 (380)
T 3iz6_a 262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNEL---PIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT 338 (380)
T ss_dssp SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSS---CSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred CeEEEEcCCCeEEEEECCCCcEEEEeccccccccccc---CceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEec
Confidence 9999999999999999998754322111100 01111 358999999999999995 899999999999888776632
Q ss_pred --CCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCc
Q 004924 610 --DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 646 (723)
Q Consensus 610 --~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~ 646 (723)
..|...|.+++|+|+|++|++|+.||+|++|++...+
T Consensus 339 ~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 339 LQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred ccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 3578999999999999999999999999999998654
No 23
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.4e-37 Score=327.70 Aligned_cols=292 Identities=14% Similarity=0.143 Sum_probs=230.5
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccc
Q 004924 331 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 410 (723)
Q Consensus 331 ~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~ 410 (723)
..++|+|++||+++.|++|+||++.+. ...+......+ |...|.+++|+|+|++|++|+.|+++++|+......
T Consensus 22 l~~sp~g~~las~~~D~~i~iw~~~~~--~~~~~~~~~~~--h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~-- 95 (345)
T 3fm0_A 22 LAWNPAGTLLASCGGDRRIRIWGTEGD--SWICKSVLSEG--HQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF-- 95 (345)
T ss_dssp EEECTTSSCEEEEETTSCEEEEEEETT--EEEEEEEECSS--CSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E--
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcCCC--cceeeeeeccc--cCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe--
Confidence 348999999999999999999999842 11122232344 999999999999999999999999999999763211
Q ss_pred cccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCC---cEEEEEeCCCCCeEEE
Q 004924 411 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF---QTLATFANPPPIATYF 484 (723)
Q Consensus 411 g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~---~~~~~~~~~~~~v~~l 484 (723)
.++..+. +|...|.+++|+ +++|++|+ |++|++||+.++ .++..+.+|...|.++
T Consensus 96 -----------------~~~~~~~--~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~ 156 (345)
T 3fm0_A 96 -----------------ECVTTLE--GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHV 156 (345)
T ss_dssp -----------------EEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEE
T ss_pred -----------------EEEEEcc--CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEE
Confidence 1111111 799999999999 88999999 999999999876 3466778999999999
Q ss_pred EEcCCC-eEEEEECCCcEEEEeCCCCc--EEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee-------
Q 004924 485 ILLPQD-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL------- 554 (723)
Q Consensus 485 ~~~p~~-~l~sgs~dg~I~iwd~~~~~--~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~------- 554 (723)
+|+|++ .|++|+.|+.|++||..+++ +...+.+|...|.+++|+|+|++|++++.|++|++||.......
T Consensus 157 ~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~ 236 (345)
T 3fm0_A 157 VWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSG 236 (345)
T ss_dssp EECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC-
T ss_pred EECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeec
Confidence 999999 99999999999999998875 45778999999999999999999999999999999997432110
Q ss_pred ---eceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCce----eE---EecCCCCCCCeEEEEEee
Q 004924 555 ---CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH----TS---QLVPDKMDLPITYATYSC 623 (723)
Q Consensus 555 ---~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~----~~---~~~~~~h~~~v~~l~~sp 623 (723)
...++.++...|. ..|.+++|+|++..+++ +.|+.|++|+...+.. .. ......|...|.+++|+|
T Consensus 237 ~~~~~~~~~~~~~~h~---~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p 313 (345)
T 3fm0_A 237 SDPSWKCICTLSGFHS---RTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNP 313 (345)
T ss_dssp --CEEEEEEEECSSCS---SCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECS
T ss_pred cCCccceeEEecCCCC---CcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeC
Confidence 1122333333455 78999999999999998 6999999999875431 11 111235789999999999
Q ss_pred CC-cEEEEEeCCCcEEEEECCCCcEEEE
Q 004924 624 DG-KCIYVSCKSGHVKVFDTSTLELRCQ 650 (723)
Q Consensus 624 dg-~~l~sgs~dg~I~iwd~~~~~~~~~ 650 (723)
++ .+|++|+.||.|++|+..+++....
T Consensus 314 ~~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 314 KEPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp SSTTEEEEEETTSCEEEEEECC------
T ss_pred CCceEEEEcCCCCcEEEEEecCCCCccc
Confidence 98 5999999999999999998876543
No 24
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-37 Score=335.55 Aligned_cols=321 Identities=17% Similarity=0.159 Sum_probs=261.8
Q ss_pred ccccCCCCC-EEEEEeCCCeEEEEee----cccCCCC---ceeEEec--CC----CCCCCceEEEEEeCCCCEEEEEECC
Q 004924 330 ESTSLPDAD-SAVCAKSLEKSVNLKL----QLINEPS---ECRTLLL--PD----NSFGGRVVRLIYSHSGDFLVALTQT 395 (723)
Q Consensus 330 ~~~~spdg~-~la~~s~dg~v~iw~~----~~~~~~~---~~~~~~l--~~----~~h~~~V~~l~fspdg~~las~s~d 395 (723)
...++|+|+ ++++++.||.|++|++ .++...- ....+.. .+ .+|.+.|.+++|+|+|++|++++.|
T Consensus 50 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 129 (425)
T 1r5m_A 50 SSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVEN 129 (425)
T ss_dssp EEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETT
T ss_pred EEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCC
Confidence 344889999 9999999999999999 6421000 1222211 11 1257899999999999999999999
Q ss_pred CcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEE
Q 004924 396 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLA 472 (723)
Q Consensus 396 g~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~ 472 (723)
|.|++|+.. +.... .+. +|...|.+++|+ +++|++++ ||.|++||+.+++.+.
T Consensus 130 g~i~i~~~~------~~~~~----------------~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 130 GELRLWNKT------GALLN----------------VLN--FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp SCEEEEETT------SCEEE----------------EEC--CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred CeEEEEeCC------CCeee----------------ecc--CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence 999999832 21111 111 689999999999 88999999 9999999999999999
Q ss_pred EEeCCCCC---------------eEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEE
Q 004924 473 TFANPPPI---------------ATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS 537 (723)
Q Consensus 473 ~~~~~~~~---------------v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~ 537 (723)
.+..+... +.+++|+|++.+++++.+|.|++||+.+++.+..+.+|...|.+++|+|++++++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 265 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA 265 (425)
T ss_dssp EECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEE
Confidence 98877766 889999998888899999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCe
Q 004924 538 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPI 616 (723)
Q Consensus 538 s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v 616 (723)
+.|+.|++||+++++. +. ...+|. ..|.+++|+|++ .+++ +.|+.|++||+++++.+..+.. |...|
T Consensus 266 ~~d~~i~i~d~~~~~~-----~~-~~~~~~---~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i 333 (425)
T 1r5m_A 266 SDDGTLRIWHGGNGNS-----QN-CFYGHS---QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV--DGVPI 333 (425)
T ss_dssp ETTSCEEEECSSSBSC-----SE-EECCCS---SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC--TTCCE
T ss_pred cCCCEEEEEECCCCcc-----ce-EecCCC---ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc--CCccE
Confidence 9999999999988532 33 223454 789999999999 7776 6999999999999998888763 58899
Q ss_pred EEEEEeeCCcEEEEEeCCCcEEEEECCCCc--------------------EEEEeecccccCCCCccC-ccceEEEEEec
Q 004924 617 TYATYSCDGKCIYVSCKSGHVKVFDTSTLE--------------------LRCQINLTAYAQPGTISL-ELYPLVIAAHP 675 (723)
Q Consensus 617 ~~l~~spdg~~l~sgs~dg~I~iwd~~~~~--------------------~~~~~~~~~~~~~g~~~~-~v~~~~v~~sp 675 (723)
.+++|+|++++|++++.||.|++||+.+++ .+..+.. |... . +.+++|+|
T Consensus 334 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~--v~~~~~s~ 404 (425)
T 1r5m_A 334 FAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQS-------SQDNDY--IFDLSWNC 404 (425)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECC-------TTCCCC--EEEEEECT
T ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcC-------cccCCc--eEEEEccC
Confidence 999999999999999999999999999887 6666653 2222 4 44999999
Q ss_pred CCCCEEEEEECCCcEEEEecC
Q 004924 676 LEPNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 676 ~d~~~las~s~Dg~v~iWd~~ 696 (723)
++.+|++++.||.|++|++.
T Consensus 405 -~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 405 -AGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -TSSEEEEEESSSCCEEEECC
T ss_pred -CCceEEEEecCceEEEEeec
Confidence 89999999999999999985
No 25
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-36 Score=321.37 Aligned_cols=287 Identities=16% Similarity=0.134 Sum_probs=221.9
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 450 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 450 (723)
|.+.|++++|+|+ +||+|+.|++|++|++..+.. .....+...+|...|.+++|+ ++
T Consensus 13 h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~-------------------~~~~~~~~~~h~~~v~~v~~sp~~~ 71 (330)
T 2hes_X 13 YKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF-------------------TLIDVLDETAHKKAIRSVAWRPHTS 71 (330)
T ss_dssp CSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC-------------------EEEEEECTTCCCSCEEEEEECTTSS
T ss_pred CCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe-------------------EEEEEEecCCccCCEEEEEECCCCC
Confidence 9999999999998 899999999999999864211 111111111499999999999 88
Q ss_pred EEEEEe-CCcEEEEEcCC-------CcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCC----CcEEEEEcC
Q 004924 451 HLFSAS-GGKISIFSLET-------FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT----KKTKAKLKG 517 (723)
Q Consensus 451 ~l~s~s-dg~I~vwd~~~-------~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~----~~~~~~l~~ 517 (723)
+|++|+ |++|++||+.. .+....+.+|...|.+++|+|++ +|++|+.|++|++||++. .+++..+.+
T Consensus 72 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~ 151 (330)
T 2hes_X 72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE 151 (330)
T ss_dssp EEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC
T ss_pred EEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc
Confidence 999999 99999999853 45677888999999999999999 999999999999999943 256788899
Q ss_pred cCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccC--CCEEEE-EcCCcEE
Q 004924 518 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLS-IHEGQID 594 (723)
Q Consensus 518 ~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spd--g~~l~~-s~dg~I~ 594 (723)
|...|.+++|+|++.+|++++.|++|++||..++.. .++. ...+|. ..|.+++|+|+ +..|++ +.|++|+
T Consensus 152 h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~---~~~~-~~~~h~---~~v~~~~~~~~~~~~~l~s~s~D~~v~ 224 (330)
T 2hes_X 152 HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW---ECVA-VLNGHE---GTVWSSDFDKTEGVFRLCSGSDDSTVR 224 (330)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE---EEEE-EECCCS---SCEEEEEECCSSSSCEEEEEETTSCEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe---eEEE-EccCCC---CcEEEEEecCCCCeeEEEEEeCCCeEE
Confidence 999999999999999999999999999999876421 2333 345676 79999999999 678887 5899999
Q ss_pred EEECCCC--------ceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcE--EEEeecccccCCCCccC
Q 004924 595 VYEAPTL--------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL--RCQINLTAYAQPGTISL 664 (723)
Q Consensus 595 vwd~~~~--------~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~~~~~~g~~~~ 664 (723)
+||+.++ .+...+. ..|...|.+++|++++ +|++++.||.|++|+..+++. ..... .+|...
T Consensus 225 iw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~------~~h~~~ 296 (330)
T 2hes_X 225 VWKYMGDDEDDQQEWVCEAILP-DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA------LCHGVY 296 (330)
T ss_dssp EEEEEEECTTSCEEEEEEEECC-SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES------CTTTTS
T ss_pred EEEecCCCccccceeEEeeecc-cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc------cccccc
Confidence 9998754 2333332 2378899999999665 899999999999999988742 22221 133222
Q ss_pred ccceEEEEEecC-CCCEEEEEECCCcEEEEecCC
Q 004924 665 ELYPLVIAAHPL-EPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 665 ~v~~~~v~~sp~-d~~~las~s~Dg~v~iWd~~~ 697 (723)
.++ +++|+|. ++.+||+||.||+|+||++.+
T Consensus 297 ~v~--~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 297 EIN--VVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEE--EEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred eEE--EEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 444 9999994 478999999999999999865
No 26
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.5e-36 Score=322.39 Aligned_cols=295 Identities=16% Similarity=0.186 Sum_probs=233.6
Q ss_pred cCCCCCCCceEEEEE-----eC-CCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCC
Q 004924 368 LPDNSFGGRVVRLIY-----SH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS 441 (723)
Q Consensus 368 l~~~~h~~~V~~l~f-----sp-dg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 441 (723)
+.+ |.+.|++++| ++ ++++|++|+.|++|++||+..... .+. .+.....+. +|...
T Consensus 17 l~g--H~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~-~~~-------------~~~~~~~l~--~h~~~ 78 (343)
T 2xzm_R 17 LEG--HSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQ-NGY-------------FGIPHKALT--GHNHF 78 (343)
T ss_dssp EEC--CSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCC-SSB-------------SEEEEEEEC--CCSSC
T ss_pred ecc--chhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCc-ccc-------------cccccchhc--cCCCc
Confidence 555 9999999999 77 999999999999999999874322 000 011111111 79999
Q ss_pred eEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEc-
Q 004924 442 ISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK- 516 (723)
Q Consensus 442 V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~- 516 (723)
|.+++|+ +.++++|+ |++|++||+.+++.+..+.+|...|.+++|+|++ .+++|+.|+.|++||+.. .......
T Consensus 79 V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~ 157 (343)
T 2xzm_R 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAE 157 (343)
T ss_dssp EEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCT
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-Cceeeeec
Confidence 9999999 88999999 9999999999999999999999999999999999 999999999999999984 4444433
Q ss_pred --CcCCcEEEEEEcCCC----------CEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCE
Q 004924 517 --GHQNRITCLAYSLSL----------NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 584 (723)
Q Consensus 517 --~~~~~i~~l~~spdg----------~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~ 584 (723)
+|...|.+++|+|++ .++++++.|+.|++||... .... ...+|. ..|.+++|+|+|++
T Consensus 158 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~------~~~~-~~~~h~---~~v~~~~~s~~g~~ 227 (343)
T 2xzm_R 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF------QIRY-TFKAHE---SNVNHLSISPNGKY 227 (343)
T ss_dssp TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT------EEEE-EEECCS---SCEEEEEECTTSSE
T ss_pred ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC------ceeE-EEcCcc---ccceEEEECCCCCE
Confidence 688999999999987 7899999999999999543 2223 234565 78999999999999
Q ss_pred EEE-EcCCcEEEEECCC-CceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEE--Eeecccc----
Q 004924 585 LLS-IHEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC--QINLTAY---- 656 (723)
Q Consensus 585 l~~-s~dg~I~vwd~~~-~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~--~~~~~~~---- 656 (723)
|++ +.|+.|++||+.+ ......+. +...|.+++|+|++.++++| .|+.|++|++.+++... .+.....
T Consensus 228 l~sgs~dg~v~iwd~~~~~~~~~~~~---~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 303 (343)
T 2xzm_R 228 IATGGKDKKLLIWDILNLTYPQREFD---AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAE 303 (343)
T ss_dssp EEEEETTCEEEEEESSCCSSCSEEEE---CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBT
T ss_pred EEEEcCCCeEEEEECCCCcccceeec---CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhh
Confidence 998 5899999999954 44444442 35679999999999987755 57889999998876544 3321110
Q ss_pred cCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 657 AQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 657 ~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
...+| ... +.+++|+| ++++|++|+.||+|++|++.+++
T Consensus 304 ~~~~~-~~~--v~~~~~sp-~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 304 GQKGK-NPQ--CTSLAWNA-LGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp TBCCS-CCC--EEEEEECS-SSCCEEEEETTSEEEEEEEEEEE
T ss_pred hhcCC-CCc--eEEEEECC-CCCeEEEecCCceEEEEEEEccC
Confidence 01122 333 45999999 89999999999999999997754
No 27
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-38 Score=344.80 Aligned_cols=332 Identities=11% Similarity=0.073 Sum_probs=262.3
Q ss_pred cccCCCCC-EEEEE----------eCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEE
Q 004924 331 STSLPDAD-SAVCA----------KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK 399 (723)
Q Consensus 331 ~~~spdg~-~la~~----------s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~ 399 (723)
..++|+|+ +++++ +.|+.|++|++............ .|...|.+++|+|+|++|++++.||.|+
T Consensus 18 ~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 18 FAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-----QVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp CCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-----CCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred EeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-----ecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 34899987 89998 88999999999853111111111 3889999999999999999999999999
Q ss_pred EEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCc------
Q 004924 400 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ------ 469 (723)
Q Consensus 400 iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~~~~------ 469 (723)
+|++..... + ......+. +|...|.+++|+ +.++++++ ||.|++||+.+++
T Consensus 93 vw~~~~~~~--~---------------~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 153 (416)
T 2pm9_A 93 LYSTNEANN--A---------------INSMARFS--NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY 153 (416)
T ss_dssp EECCSSTTS--C---------------CCEEEECC--CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC
T ss_pred Eeecccccc--c---------------ccchhhcc--CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc
Confidence 999874211 0 01111111 699999999999 57899999 9999999998876
Q ss_pred EEEE---EeCCCCCeEEEEEcCC-C-eEEEEECCCcEEEEeCCCCcEEEEEcCc------CCcEEEEEEcCCC-CEEEEE
Q 004924 470 TLAT---FANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTKAKLKGH------QNRITCLAYSLSL-NVLVSS 537 (723)
Q Consensus 470 ~~~~---~~~~~~~v~~l~~~p~-~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~------~~~i~~l~~spdg-~~l~s~ 537 (723)
.... +..|...|.+++|+|+ + .+++|+.||.|++||+++++.+..+..+ ...|.+++|+|++ .+++++
T Consensus 154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 233 (416)
T 2pm9_A 154 TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATA 233 (416)
T ss_dssp CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEE
T ss_pred cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEE
Confidence 3333 3578889999999999 5 9999999999999999999999988876 7899999999997 689999
Q ss_pred eCCC---cEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEcc-CCCEEEE-EcCCcEEEEECCCCceeEEecCCCC
Q 004924 538 GADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM 612 (723)
Q Consensus 538 s~dg---~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~sp-dg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h 612 (723)
+.|+ .|++||++++. .++..+..+|. ..|.+++|+| ++.+|++ +.|+.|++||+++++.+..+. .|
T Consensus 234 ~~d~~~~~i~~~d~~~~~----~~~~~~~~~~~---~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~--~~ 304 (416)
T 2pm9_A 234 TGSDNDPSILIWDLRNAN----TPLQTLNQGHQ---KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP--AR 304 (416)
T ss_dssp ECCSSSCCCCEEETTSTT----SCSBCCCSCCS---SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE--CS
T ss_pred ECCCCCceEEEEeCCCCC----CCcEEeecCcc---CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec--CC
Confidence 9998 99999999852 22332221565 7899999999 8999998 589999999999999988886 46
Q ss_pred CCCeEEEEEeeCC-cEEEEEeCCCcEEEEECCCCcEEEEeec---------ccccCCCC------------------ccC
Q 004924 613 DLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINL---------TAYAQPGT------------------ISL 664 (723)
Q Consensus 613 ~~~v~~l~~spdg-~~l~sgs~dg~I~iwd~~~~~~~~~~~~---------~~~~~~g~------------------~~~ 664 (723)
...|.+++|+|++ .+|++++.||.|++|++.++........ ..+...+. +..
T Consensus 305 ~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (416)
T 2pm9_A 305 GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGE 384 (416)
T ss_dssp SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCC
T ss_pred CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccC
Confidence 8899999999999 8999999999999999988754322110 00000000 233
Q ss_pred ccceEEEEEecCCCCEEEEEECCCcEEEEecCCC
Q 004924 665 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 665 ~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
.+. +++|+| +|++||+++.||+|+||++.++
T Consensus 385 ~~~--~~~~s~-dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 385 PSP--AAHWAF-GGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CSC--CCEEET-TTEEECBCTTSSCBCCBCCCCC
T ss_pred Ccc--ceEEee-CCeEEEEeCCCCeEEEEEeccC
Confidence 333 899999 8999999999999999999864
No 28
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.6e-36 Score=328.64 Aligned_cols=301 Identities=13% Similarity=0.128 Sum_probs=236.6
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeee---EEEecCCCeeeeeccCCCCCCCeEEEEEe-
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMES---QLYQPSSKLVMTNDIAADPKDSISCFALR- 448 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~h~~~V~~v~~s- 448 (723)
|.+.|.+++|||||++||+|+ ++++++|++.++.. ...+.. ...++. .........+...|.+++|+
T Consensus 63 h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~-----~~~l~~~~~~~~~~~---~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL-----VARLSDDSAANKDPE---NLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE-----EEEECC--------------------CCCCBEEEEEECT
T ss_pred CCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCE-----EEEecCccccccccc---cccccccCCCceeEEEEEECC
Confidence 999999999999999999876 78999999875433 111100 000000 00000001244569999999
Q ss_pred -CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEE
Q 004924 449 -GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 525 (723)
Q Consensus 449 -~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l 525 (723)
|++|++|+ |++|++||+.+++.+..+.+|...|.+++|+|++ .|++|+.|++|++||++++++...+. +...+.++
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 88999999 9999999999999999999999999999999999 99999999999999999999888776 56789999
Q ss_pred EEcC-CCCEEEEEeCCCcEEEEeCCCCceeeceeee-eeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCc
Q 004924 526 AYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLH-SFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN 602 (723)
Q Consensus 526 ~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~-~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~ 602 (723)
+|+| +++++++|+.|+.|++||++++......... ....+|. ..|.+++|+|+|++|++ +.|+.|++||+++..
T Consensus 213 ~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~ 289 (393)
T 1erj_A 213 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK---DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289 (393)
T ss_dssp EECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCS---SCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCC---CCEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence 9999 8999999999999999999986543221110 0113565 78999999999999998 589999999997632
Q ss_pred ------------eeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEE
Q 004924 603 ------------HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV 670 (723)
Q Consensus 603 ------------~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 670 (723)
+...+. +|...|.+++|+|++.+|++|+.||.|++||..+++.+..+.. | .+.+. +
T Consensus 290 ~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~-------h-~~~v~--~ 357 (393)
T 1erj_A 290 NKSDSKTPNSGTCEVTYI--GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG-------H-RNSVI--S 357 (393)
T ss_dssp -----------CEEEEEE--CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC-------C-SSCEE--E
T ss_pred CcccccCCCCCcceEEEe--cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECC-------C-CCCEE--E
Confidence 333443 4788999999999999999999999999999999998888763 2 34454 8
Q ss_pred EEEecC-----CCCEEEEEECCCcEEEEecCCC
Q 004924 671 IAAHPL-----EPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 671 v~~sp~-----d~~~las~s~Dg~v~iWd~~~~ 698 (723)
++|+|. ++++||+|+.||+|+||++...
T Consensus 358 v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 358 VAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 888752 5789999999999999998654
No 29
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.6e-36 Score=319.43 Aligned_cols=298 Identities=15% Similarity=0.194 Sum_probs=235.9
Q ss_pred cceeeccCCCC-CCceeeeCCCcccccccCC-CCCEEEEEeCCCeEEEEeecccCCCCc--eeEEecCCCCCCCceEEEE
Q 004924 306 RPLDASSGDDS-NDSSCFNDNNQSRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSE--CRTLLLPDNSFGGRVVRLI 381 (723)
Q Consensus 306 ~~~~~~~~h~~-v~s~~~~~~~~~~~~~~sp-dg~~la~~s~dg~v~iw~~~~~~~~~~--~~~~~l~~~~h~~~V~~l~ 381 (723)
....++.||.+ |.++.|.... .+| ++++|++|+.|++|++|++........ .....+.+ |...|.+++
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~------~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~--h~~~V~~~~ 83 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQ------KENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG--HNHFVSDLA 83 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCS------STTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECC--CSSCEEEEE
T ss_pred eeeeeeccchhhhhheeeEEEe------ecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhcc--CCCceEEEE
Confidence 34566788988 6776653221 234 899999999999999999974321111 11222444 999999999
Q ss_pred EeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CC
Q 004924 382 YSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GG 458 (723)
Q Consensus 382 fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg 458 (723)
|+|++.++++|+.|++|++||+.++.. +..+. +|...|.+++|+ +++|++++ |+
T Consensus 84 ~~~~~~~l~s~s~D~~v~lwd~~~~~~---------------------~~~~~--~h~~~v~~v~~sp~~~~l~s~~~d~ 140 (343)
T 2xzm_R 84 LSQENCFAISSSWDKTLRLWDLRTGTT---------------------YKRFV--GHQSEVYSVAFSPDNRQILSAGAER 140 (343)
T ss_dssp ECSSTTEEEEEETTSEEEEEETTSSCE---------------------EEEEE--CCCSCEEEEEECSSTTEEEEEETTS
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCcE---------------------EEEEc--CCCCcEEEEEECCCCCEEEEEcCCC
Confidence 999999999999999999999874322 11111 699999999999 88999999 99
Q ss_pred cEEEEEcCCCcEEEEEe---CCCCCeEEEEEcCCC-----------eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEE
Q 004924 459 KISIFSLETFQTLATFA---NPPPIATYFILLPQD-----------LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 524 (723)
Q Consensus 459 ~I~vwd~~~~~~~~~~~---~~~~~v~~l~~~p~~-----------~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~ 524 (723)
+|++||+. +....... +|...|.+++|+|++ .+++|+.||.|++|| .+++....+.+|...|.+
T Consensus 141 ~i~~wd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~ 218 (343)
T 2xzm_R 141 EIKLWNIL-GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNH 218 (343)
T ss_dssp CEEEEESS-SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEE
T ss_pred EEEEEecc-CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceE
Confidence 99999997 44444433 688899999999873 699999999999999 456777889999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCcee
Q 004924 525 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHT 604 (723)
Q Consensus 525 l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~ 604 (723)
++|+|+|++|++|+.||.|++||+.... .....+..+ ..|.+++|+|++.+++++.|+.|++||+.+++..
T Consensus 219 ~~~s~~g~~l~sgs~dg~v~iwd~~~~~----~~~~~~~~~-----~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~ 289 (343)
T 2xzm_R 219 LSISPNGKYIATGGKDKKLLIWDILNLT----YPQREFDAG-----STINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKA 289 (343)
T ss_dssp EEECTTSSEEEEEETTCEEEEEESSCCS----SCSEEEECS-----SCEEEEEECSSSCEEEEEESSCEEEEESSSCCSC
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCc----ccceeecCC-----CcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCC
Confidence 9999999999999999999999995422 122212222 5799999999999998889999999999877654
Q ss_pred E--EecC---------CCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCC
Q 004924 605 S--QLVP---------DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 645 (723)
Q Consensus 605 ~--~~~~---------~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~ 645 (723)
. .+.. .+|...|.+++|+|+|++|++|+.||.|++|++.++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 290 PVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred ceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 3 3321 146788999999999999999999999999998765
No 30
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.9e-37 Score=327.39 Aligned_cols=281 Identities=10% Similarity=0.051 Sum_probs=222.8
Q ss_pred cccCCCCCEEEEEeC------CCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEecc
Q 004924 331 STSLPDADSAVCAKS------LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ 404 (723)
Q Consensus 331 ~~~spdg~~la~~s~------dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~ 404 (723)
..|||||++||+++. |+.+++|+............. .. +|...|.+++|+|+++ +++++.||+|+|||+.
T Consensus 48 v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~-~~--~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~ 123 (357)
T 4g56_B 48 VRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTA-GV--QTEAGVTDVAWVSEKG-ILVASDSGAVELWEIL 123 (357)
T ss_dssp EEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSE-EE--ECSSCEEEEEEETTTE-EEEEETTSCEEEC---
T ss_pred EEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecc-cC--CCCCCEEEEEEcCCCC-EEEEECCCEEEEeecc
Confidence 348999999999997 678999987653222222111 11 3889999999999987 5678899999999987
Q ss_pred CCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCe
Q 004924 405 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA 481 (723)
Q Consensus 405 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v 481 (723)
++.. .... .....+|...|.+++|+ +++|++|+ ||+|++||+.+++.+..+.+|...|
T Consensus 124 ~~~~-----~~~~--------------~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v 184 (357)
T 4g56_B 124 EKES-----LLVN--------------KFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEV 184 (357)
T ss_dssp ----------CCC--------------CEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred ccce-----eEEE--------------eeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCE
Confidence 5432 0000 00011699999999999 88999999 9999999999999999999999999
Q ss_pred EEEEEcCCC--eEEEEECCCcEEEEeCCCCcEEEEEc--CcCCcEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceeec
Q 004924 482 TYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCS 556 (723)
Q Consensus 482 ~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~~l~--~~~~~i~~l~~spd-g~~l~s~s~dg~I~vwd~~~~~~~~~ 556 (723)
++++|+|++ .+++++.||.|++||++++++...+. .|...+.+++|+|+ +.++++|+.|+.|++||+++++.
T Consensus 185 ~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~--- 261 (357)
T 4g56_B 185 NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS--- 261 (357)
T ss_dssp EEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG---
T ss_pred EEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE---
Confidence 999999988 78999999999999999988776553 46778999999997 46899999999999999998643
Q ss_pred eeeeeeecCCCCCCCCeEEEEEccCC-CEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEee-CCcEEEEEeC
Q 004924 557 KFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC-DGKCIYVSCK 633 (723)
Q Consensus 557 ~~l~~~~~~~~~~~~~v~~l~~spdg-~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~sgs~ 633 (723)
+. ...+|. ..|.+++|+|++ ++|++ +.|++|+|||+++++++..+ +|...|++++|+| ++.+|++|+.
T Consensus 262 --~~-~~~~~~---~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~vafsP~d~~~l~s~s~ 332 (357)
T 4g56_B 262 --AQ-TSAVHS---QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTGVAWSPLDHSKFTTVGW 332 (357)
T ss_dssp --CE-EECCCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEEEEECSSSTTEEEEEET
T ss_pred --eE-EEeccc---eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEEEEEeCCCCCEEEEEcC
Confidence 33 234555 789999999997 56777 58999999999999887655 5799999999998 8999999999
Q ss_pred CCcEEEEECCCCc
Q 004924 634 SGHVKVFDTSTLE 646 (723)
Q Consensus 634 dg~I~iwd~~~~~ 646 (723)
||+|++|++.+..
T Consensus 333 Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 333 DHKVLHHHLPSEG 345 (357)
T ss_dssp TSCEEEEECC---
T ss_pred CCeEEEEECCCCC
Confidence 9999999997643
No 31
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=322.39 Aligned_cols=279 Identities=15% Similarity=0.106 Sum_probs=222.2
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeecc-------cC-CCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEe
Q 004924 331 STSLPDADSAVCAKSLEKSVNLKLQL-------IN-EPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK 402 (723)
Q Consensus 331 ~~~spdg~~la~~s~dg~v~iw~~~~-------~~-~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd 402 (723)
..|+|||+++++++ |+++++|+... .. ....+... + .|...|.+++|+|++ +|++|+.||+|+|||
T Consensus 36 ~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~-~---~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd 109 (344)
T 4gqb_B 36 ARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAG-V---QTEAGVADLTWVGER-GILVASDSGAVELWE 109 (344)
T ss_dssp EEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEE-E---EESSCEEEEEEETTT-EEEEEETTSEEEEEE
T ss_pred EEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeee-e---ccCCCEEEEEEeCCC-eEEEEECCCEEEEEe
Confidence 34899999999887 77888887321 00 01111111 1 267789999999996 588999999999999
Q ss_pred ccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCC
Q 004924 403 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPP 479 (723)
Q Consensus 403 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~ 479 (723)
+.++.. ..... ....+|...|.+++|+ |++|++|+ ||+|++||+.+++++..+.+|..
T Consensus 110 ~~~~~~-----~~~~~--------------~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 110 LDENET-----LIVSK--------------FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp ECTTSS-----CEEEE--------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred ccCCCc-----eeEee--------------ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 875432 11110 0011699999999999 89999999 99999999999999999999999
Q ss_pred CeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEEEEEc--CcCCcEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCcee
Q 004924 480 IATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKL 554 (723)
Q Consensus 480 ~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~~l~--~~~~~i~~l~~spd-g~~l~s~s~dg~I~vwd~~~~~~~ 554 (723)
.|++++|+|++ .+++|+.|++|++||+++++....+. .|...+.+++|+|+ +.++++|+.||+|++||+++++
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~-- 248 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS-- 248 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc--
Confidence 99999999998 78999999999999999999888774 35667999999995 5788999999999999999863
Q ss_pred eceeeeeeecCCCCCCCCeEEEEEccCC-CEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCc-EEEEE
Q 004924 555 CSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK-CIYVS 631 (723)
Q Consensus 555 ~~~~l~~~~~~~~~~~~~v~~l~~spdg-~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~-~l~sg 631 (723)
.+. ...+|. ..|.+++|+|++ ++|++ +.|++|+|||+.++++.. +. +|...|++++|+|+++ +|++|
T Consensus 249 ---~~~-~~~~h~---~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--~H~~~V~~v~~sp~~~~llas~ 318 (344)
T 4gqb_B 249 ---CVL-SSAVHS---QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--AHRDFVRDATWSPLNHSLLTTV 318 (344)
T ss_dssp ---CCE-EEECCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--CCSSCEEEEEECSSSTTEEEEE
T ss_pred ---EEE-EEcCCC---CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--CCCCCEEEEEEeCCCCeEEEEE
Confidence 334 234566 799999999998 56777 589999999999887654 33 6899999999999986 57789
Q ss_pred eCCCcEEEEECCCCc
Q 004924 632 CKSGHVKVFDTSTLE 646 (723)
Q Consensus 632 s~dg~I~iwd~~~~~ 646 (723)
+.||+|++|++.+..
T Consensus 319 s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 319 GWDHQVVHHVVPTEP 333 (344)
T ss_dssp ETTSCEEEEECCC--
T ss_pred cCCCeEEEEECCCCC
Confidence 999999999998754
No 32
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.6e-35 Score=312.69 Aligned_cols=296 Identities=16% Similarity=0.200 Sum_probs=241.8
Q ss_pred ecCCCCCCCceEEEEEeCC-CCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEE
Q 004924 367 LLPDNSFGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF 445 (723)
Q Consensus 367 ~l~~~~h~~~V~~l~fspd-g~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 445 (723)
+|.| |.+.|++++|+|+ +++|||||.||+|+|||+....... +.....+. +|...|.++
T Consensus 33 tL~G--H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~----------------~~~~~~l~--~h~~~V~~~ 92 (340)
T 4aow_A 33 TLKG--HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY----------------GIPQRALR--GHSHFVSDV 92 (340)
T ss_dssp EECC--CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS----------------EEEEEEEC--CCSSCEEEE
T ss_pred EECC--ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc----------------ceeeEEEe--CCCCCEEEE
Confidence 3665 9999999999997 6899999999999999987543211 11111111 799999999
Q ss_pred EEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEE-EEEcCcCC
Q 004924 446 ALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK-AKLKGHQN 520 (723)
Q Consensus 446 ~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~-~~l~~~~~ 520 (723)
+|+ +++|++++ |+.|++|+...+........+...+....+++++ .+++|+.|+.+++||....... ....+|..
T Consensus 93 ~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~ 172 (340)
T 4aow_A 93 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE 172 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSS
T ss_pred EECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccC
Confidence 999 88999999 9999999999999988888888999999999999 9999999999999998765443 34567899
Q ss_pred cEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEE
Q 004924 521 RITCLAYSLSL--NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYE 597 (723)
Q Consensus 521 ~i~~l~~spdg--~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd 597 (723)
.+.+++|++++ ..+++++.|+.|++||+++++ .+. ...+|. ..|.+++|+|++++|++ +.|+.|++||
T Consensus 173 ~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-----~~~-~~~~h~---~~v~~~~~s~~~~~l~s~s~Dg~i~iwd 243 (340)
T 4aow_A 173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-----LKT-NHIGHT---GYLNTVTVSPDGSLCASGGKDGQAMLWD 243 (340)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-----EEE-EECCCS---SCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred cccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-----eee-EecCCC---CcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 99999998865 578899999999999999853 233 344566 79999999999999998 5999999999
Q ss_pred CCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeeccccc--CCCCccCccceEEEEEec
Q 004924 598 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA--QPGTISLELYPLVIAAHP 675 (723)
Q Consensus 598 ~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~--~~g~~~~~v~~~~v~~sp 675 (723)
+++++.+..+.. ...+.+++|+|++.++ +++.|+.|++||++++..+..+...... ..+ |... +++++|+|
T Consensus 244 ~~~~~~~~~~~~---~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-h~~~--v~~l~~s~ 316 (340)
T 4aow_A 244 LNEGKHLYTLDG---GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKA-EPPQ--CTSLAWSA 316 (340)
T ss_dssp TTTTEEEEEEEC---SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------C-CCCC--EEEEEECT
T ss_pred eccCceeeeecC---CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccC-CCCC--EEEEEECC
Confidence 999998888753 6789999999988655 5567999999999999888776543211 112 2333 55999999
Q ss_pred CCCCEEEEEECCCcEEEEecCCCc
Q 004924 676 LEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 676 ~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
++++|++|+.||.|+|||+.+|.
T Consensus 317 -dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 317 -DGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp -TSSEEEEEETTSCEEEEEEEC--
T ss_pred -CCCEEEEEeCCCEEEEEeCCCcC
Confidence 89999999999999999999885
No 33
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.5e-35 Score=337.55 Aligned_cols=342 Identities=11% Similarity=0.091 Sum_probs=275.1
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCc-eEEEEEeC--CCCEEEEEECCCcEEEEeccCC-
Q 004924 331 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGR-VVRLIYSH--SGDFLVALTQTATHKLWKWQSN- 406 (723)
Q Consensus 331 ~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~-V~~l~fsp--dg~~las~s~dg~i~iWd~~~~- 406 (723)
..++|+|+++++++ ++.|++|++.+...+...... +.+ |... |.+++|+| +|++|++|+.||+|++|++.++
T Consensus 24 ~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~-~~~--h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~ 99 (615)
T 1pgu_A 24 LSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQ-FTG--HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 99 (615)
T ss_dssp CEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEE-ECT--TTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred EEECCCCCEEEEec-CCeEEEEECCCCCCccccceE-Eec--CCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCc
Confidence 34899999999998 889999999842101033322 444 9999 99999999 9999999999999999999643
Q ss_pred -------cc-----------------ccccccee--------eeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC-E
Q 004924 407 -------KQ-----------------SLEEENVN--------MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-H 451 (723)
Q Consensus 407 -------~~-----------------~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~-~ 451 (723)
.. +++..... ..+.+|+ .+....... +|...|.+++|+ +. .
T Consensus 100 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~--~~~~~v~~~~~~~~~~~~ 175 (615)
T 1pgu_A 100 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVS--GHSQRINACHLKQSRPMR 175 (615)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECC--SCSSCEEEEEECSSSSCE
T ss_pred ccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeee--cCCccEEEEEECCCCCcE
Confidence 11 12221111 2345555 444444443 799999999999 54 7
Q ss_pred EEEEe-CCcEEEEEcCCCcEEEEEeCCCC---CeEEEEEcCC-C-eEEEEECCCcEEEEeCCCCcEEEEE-c---CcCCc
Q 004924 452 LFSAS-GGKISIFSLETFQTLATFANPPP---IATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTKAKL-K---GHQNR 521 (723)
Q Consensus 452 l~s~s-dg~I~vwd~~~~~~~~~~~~~~~---~v~~l~~~p~-~-~l~sgs~dg~I~iwd~~~~~~~~~l-~---~~~~~ 521 (723)
+++++ |+.|++||+.+++.+..+.+|.. .|++++|+|+ + .+++|+.||.|++||+.+++.+..+ . +|...
T Consensus 176 l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 255 (615)
T 1pgu_A 176 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG 255 (615)
T ss_dssp EEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSC
T ss_pred EEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCc
Confidence 99999 99999999999999999999998 9999999999 8 9999999999999999999999999 6 89999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceee----------------------------------------e-
Q 004924 522 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL----------------------------------------H- 560 (723)
Q Consensus 522 i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l----------------------------------------~- 560 (723)
|.++.|+ ++.++++++.|+.|++||+.+++....... .
T Consensus 256 v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~ 334 (615)
T 1pgu_A 256 IFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKT 334 (615)
T ss_dssp EEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEE
T ss_pred eEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEE
Confidence 9999999 999999999999999999986532110000 0
Q ss_pred --------------------------------------------------------------------------------
Q 004924 561 -------------------------------------------------------------------------------- 560 (723)
Q Consensus 561 -------------------------------------------------------------------------------- 560 (723)
T Consensus 335 ~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~ 414 (615)
T 1pgu_A 335 ISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASA 414 (615)
T ss_dssp ECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEE
T ss_pred EeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEE
Confidence
Q ss_pred -------------------------------------------------------------------eeecCCCCCCCCe
Q 004924 561 -------------------------------------------------------------------SFQTGLVPETTIV 573 (723)
Q Consensus 561 -------------------------------------------------------------------~~~~~~~~~~~~v 573 (723)
....+| ...|
T Consensus 415 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~---~~~v 491 (615)
T 1pgu_A 415 NNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPL---RAKP 491 (615)
T ss_dssp CSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCC---SSCE
T ss_pred cCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCc---cCce
Confidence 000112 2678
Q ss_pred EEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEee----------CCcEEEEEeCCCcEEEEEC
Q 004924 574 NHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC----------DGKCIYVSCKSGHVKVFDT 642 (723)
Q Consensus 574 ~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~sp----------dg~~l~sgs~dg~I~iwd~ 642 (723)
.+++|+|++++|++ +.|+.|++||+.+++.+..+.. .|...|++++|+| ++++|++|+.||.|++||+
T Consensus 492 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~ 570 (615)
T 1pgu_A 492 SYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA-FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 570 (615)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC-CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEES
T ss_pred EEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeec-CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEEC
Confidence 99999999999998 5899999999999998877653 2789999999999 9999999999999999999
Q ss_pred CCC-cEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCC
Q 004924 643 STL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 643 ~~~-~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~ 697 (723)
.++ +.+..+. +| ...+. +++|+| ++. |++++.||+|++|++..
T Consensus 571 ~~~~~~~~~~~-------~h-~~~v~--~l~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 571 KRPMKIIKALN-------AH-KDGVN--NLLWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp SCTTCCEEETT-------SS-TTCEE--EEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred CCCceechhhh-------cC-ccceE--EEEEcC-CCC-eEEecCCceEEEEeeec
Confidence 998 6666654 32 34444 999999 788 99999999999999865
No 34
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.2e-35 Score=313.69 Aligned_cols=293 Identities=16% Similarity=0.202 Sum_probs=239.0
Q ss_pred eeeccCCCC-CCceeeeCCCcccccccCCC-CCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCC
Q 004924 308 LDASSGDDS-NDSSCFNDNNQSRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS 385 (723)
Q Consensus 308 ~~~~~~h~~-v~s~~~~~~~~~~~~~~spd-g~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspd 385 (723)
..++.||.+ |.++. ++|+ +++|++|+.|++|+|||+.............+.+ |...|.+++|+|+
T Consensus 31 ~~tL~GH~~~V~~v~-----------~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~--h~~~V~~~~~s~d 97 (340)
T 4aow_A 31 RGTLKGHNGWVTQIA-----------TTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG--HSHFVSDVVISSD 97 (340)
T ss_dssp EEEECCCSSCEEEEE-----------ECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECC--CSSCEEEEEECTT
T ss_pred EEEECCccCCEEEEE-----------EeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeC--CCCCEEEEEECCC
Confidence 346788888 66654 5565 6799999999999999998532222222223554 9999999999999
Q ss_pred CCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEE
Q 004924 386 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISI 462 (723)
Q Consensus 386 g~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~v 462 (723)
|++|++++.|+.|++|+...... ..... .+...+..+.++ +.++++++ |+.+++
T Consensus 98 g~~l~s~~~d~~i~~~~~~~~~~---------------------~~~~~--~~~~~~~~~~~~~~~~~l~s~s~d~~~~~ 154 (340)
T 4aow_A 98 GQFALSGSWDGTLRLWDLTTGTT---------------------TRRFV--GHTKDVLSVAFSSDNRQIVSGSRDKTIKL 154 (340)
T ss_dssp SSEEEEEETTSEEEEEETTTTEE---------------------EEEEE--CCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred CCEEEEEcccccceEEeecccce---------------------eeeec--CCCCceeEEEEeecCccceeecCCCeEEE
Confidence 99999999999999999764321 00001 466778888888 88999999 999999
Q ss_pred EEcCCCcEE-EEEeCCCCCeEEEEEcCCC---eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEe
Q 004924 463 FSLETFQTL-ATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG 538 (723)
Q Consensus 463 wd~~~~~~~-~~~~~~~~~v~~l~~~p~~---~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s 538 (723)
||+...... ....+|...+.+++|++++ .+++++.|+.|++||+.+++.+..+.+|...|++++|+|++++|++|+
T Consensus 155 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s 234 (340)
T 4aow_A 155 WNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG 234 (340)
T ss_dssp ECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe
Confidence 999765443 3345888999999999876 788999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecC-------CC
Q 004924 539 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-------DK 611 (723)
Q Consensus 539 ~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~-------~~ 611 (723)
.||.|++||++++. .+..+. ++ ..|.+++|+|++.+++++.|+.|++||++++..+..+.. ..
T Consensus 235 ~Dg~i~iwd~~~~~-----~~~~~~-~~----~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 304 (340)
T 4aow_A 235 KDGQAMLWDLNEGK-----HLYTLD-GG----DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKA 304 (340)
T ss_dssp TTCEEEEEETTTTE-----EEEEEE-CS----SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------C
T ss_pred CCCeEEEEEeccCc-----eeeeec-CC----ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccC
Confidence 99999999999853 333222 33 689999999999888888999999999998877766542 24
Q ss_pred CCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCc
Q 004924 612 MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 646 (723)
Q Consensus 612 h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~ 646 (723)
|...|++++|+|||++|++|+.||.|+|||+++|+
T Consensus 305 h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 305 EPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 68899999999999999999999999999999985
No 35
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-36 Score=314.41 Aligned_cols=302 Identities=12% Similarity=0.091 Sum_probs=224.4
Q ss_pred cceeeccCCCC-CCceeeeCCCcccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeC
Q 004924 306 RPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 384 (723)
Q Consensus 306 ~~~~~~~~h~~-v~s~~~~~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fsp 384 (723)
..++++.+|.+ |.++. ++|+ ++|+++.|++|++|++... ...+... +...+|...|.+++|+|
T Consensus 5 ~~~~~~~~h~~~v~~~~-----------~s~~--~las~~~D~~i~lw~~~~~--~~~~~~~-~~~~~h~~~v~~v~~sp 68 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFD-----------FSQG--ILATGSTDRKIKLVSVKYD--DFTLIDV-LDETAHKKAIRSVAWRP 68 (330)
T ss_dssp EEEEEEECCSSCEEEEE-----------EETT--EEEEEESSSCEEEEECSSS--CCEEEEE-ECTTCCCSCEEEEEECT
T ss_pred ccceeeccCCCceeeec-----------cCCC--EEEEEcCCCEEEEEEecCC--CeEEEEE-EecCCccCCEEEEEECC
Confidence 34556667777 55544 4444 7999999999999999742 1122222 32213999999999999
Q ss_pred CCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEE
Q 004924 385 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKIS 461 (723)
Q Consensus 385 dg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~ 461 (723)
+|++|++|+.|++|++|+...... ..........+. +|...|.+++|+ +++|++|+ |++|+
T Consensus 69 ~~~~las~s~D~~v~iw~~~~~~~--------------~~~~~~~~~~~~--~h~~~V~~v~~sp~g~~las~s~D~~v~ 132 (330)
T 2hes_X 69 HTSLLAAGSFDSTVSIWAKEESAD--------------RTFEMDLLAIIE--GHENEVKGVAWSNDGYYLATCSRDKSVW 132 (330)
T ss_dssp TSSEEEEEETTSCEEEEEC---------------------CCCEEEEEEC------CEEEEEECTTSCEEEEEETTSCEE
T ss_pred CCCEEEEEeCCCcEEEEEcccCcC--------------ccccceeEEEEc--CCCCcEEEEEECCCCCEEEEEeCCCEEE
Confidence 999999999999999999753211 000111222222 799999999999 88999999 99999
Q ss_pred EEEcCC----CcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCC--cEEEEEcCcCCcEEEEEEcCC--CC
Q 004924 462 IFSLET----FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK--KTKAKLKGHQNRITCLAYSLS--LN 532 (723)
Q Consensus 462 vwd~~~----~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~--~~~~~l~~~~~~i~~l~~spd--g~ 532 (723)
+||+.. .+++..+.+|...|.+++|+|++ .|++|+.|++|++||..++ +++..+.+|...|.+++|+|+ +.
T Consensus 133 iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 212 (330)
T 2hes_X 133 IWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVF 212 (330)
T ss_dssp EEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSC
T ss_pred EEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCee
Confidence 999943 35677888999999999999999 9999999999999998776 678889999999999999998 67
Q ss_pred EEEEEeCCCcEEEEeCCCCcee---eceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCc--eeEE
Q 004924 533 VLVSSGADAQLCVWDAVGWKKL---CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN--HTSQ 606 (723)
Q Consensus 533 ~l~s~s~dg~I~vwd~~~~~~~---~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~--~~~~ 606 (723)
.+++++.|++|++||+.++... .......+...|. ..|.+++|++++ +|++ +.||.|++||..+++ ....
T Consensus 213 ~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~ 288 (330)
T 2hes_X 213 RLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAK 288 (330)
T ss_dssp EEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred EEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEec
Confidence 8999999999999998753211 0122232333365 789999999876 5555 799999999998774 2323
Q ss_pred ecCCCCCC-CeEEEEEee--CCcEEEEEeCCCcEEEEECCC
Q 004924 607 LVPDKMDL-PITYATYSC--DGKCIYVSCKSGHVKVFDTST 644 (723)
Q Consensus 607 ~~~~~h~~-~v~~l~~sp--dg~~l~sgs~dg~I~iwd~~~ 644 (723)
. ...|.. .|.+++|+| ++++|++|+.||.|++|+++.
T Consensus 289 ~-~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 289 R-ALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp E-SCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred c-ccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 2 224565 899999999 789999999999999999865
No 36
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-35 Score=353.56 Aligned_cols=351 Identities=11% Similarity=0.060 Sum_probs=252.4
Q ss_pred cccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcc
Q 004924 329 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 408 (723)
Q Consensus 329 ~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~ 408 (723)
....|+|+|+++|+|+.||+|++|+... ..+... + .|...|.+++|+| |++|++++.|++|++||+.++..
T Consensus 21 ~~lafspdg~~lAsgs~Dg~I~lw~~~~----~~~~~~-~---~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~ 91 (902)
T 2oaj_A 21 IAAAFDFTQNLLAIATVTGEVHIYGQQQ----VEVVIK-L---EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV 91 (902)
T ss_dssp EEEEEETTTTEEEEEETTSEEEEECSTT----CEEEEE-C---SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeCCC----cEEEEE-c---CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE
Confidence 3344889999999999999999999863 333322 2 2788999999999 88999999999999999987543
Q ss_pred ----------------cccccce----eeeeEEEecCCCeeeee---------ccCCCCCCCeEEEEEe---CCEEEEEe
Q 004924 409 ----------------SLEEENV----NMESQLYQPSSKLVMTN---------DIAADPKDSISCFALR---GSHLFSAS 456 (723)
Q Consensus 409 ----------------~~g~~~~----~~~~~~~~~~~~~~~~~---------~~~~~h~~~V~~v~~s---~~~l~s~s 456 (723)
+++.... ...+++||..++.+... ....+|.++|.+++|+ +..+++|+
T Consensus 92 ~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~ 171 (902)
T 2oaj_A 92 LTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY 171 (902)
T ss_dssp EEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC
T ss_pred EEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe
Confidence 1222111 11368999988876421 1224699999999999 35788888
Q ss_pred -CCcEEEEEcCCCcEEEEEeCC------------------CCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEE--
Q 004924 457 -GGKISIFSLETFQTLATFANP------------------PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-- 514 (723)
Q Consensus 457 -dg~I~vwd~~~~~~~~~~~~~------------------~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~-- 514 (723)
||.| +||+.+++.+..+..| ...|++++|+|+| .|++|+.||.|++||+++++++..
T Consensus 172 ~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~ 250 (902)
T 2oaj_A 172 EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMART 250 (902)
T ss_dssp SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred CCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEe
Confidence 9999 9999999998888765 4679999999999 999999999999999988776543
Q ss_pred Ec---C-------------cCCcEEEEEEc----C---------------------------------------------
Q 004924 515 LK---G-------------HQNRITCLAYS----L--------------------------------------------- 529 (723)
Q Consensus 515 l~---~-------------~~~~i~~l~~s----p--------------------------------------------- 529 (723)
+. + |...|++++|+ |
T Consensus 251 l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~ 330 (902)
T 2oaj_A 251 VFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYAN 330 (902)
T ss_dssp SSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHS
T ss_pred ecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcC
Confidence 10 1 12345555552 2
Q ss_pred --------------------------------------------------------------------------------
Q 004924 530 -------------------------------------------------------------------------------- 529 (723)
Q Consensus 530 -------------------------------------------------------------------------------- 529 (723)
T Consensus 331 ~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s 410 (902)
T 2oaj_A 331 PKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAA 410 (902)
T ss_dssp CSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEE
T ss_pred ccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEE
Confidence
Q ss_pred -----------------------------------CCCEEEEEeCCCcEEEEeCCCCceeeceeeee-----eecCCCCC
Q 004924 530 -----------------------------------SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-----FQTGLVPE 569 (723)
Q Consensus 530 -----------------------------------dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~-----~~~~~~~~ 569 (723)
+++.+++|+.|++|++||+.++.......+.. +..+|.
T Consensus 411 ~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~-- 488 (902)
T 2oaj_A 411 SVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKE-- 488 (902)
T ss_dssp EEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSS--
T ss_pred EcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCC--
Confidence 22333344444444444443321100000000 001344
Q ss_pred CCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCc---------------------------------------------e
Q 004924 570 TTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN---------------------------------------------H 603 (723)
Q Consensus 570 ~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~---------------------------------------------~ 603 (723)
..|.+++|+|||++||+ +.||+|++||+.+++ +
T Consensus 489 -~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 567 (902)
T 2oaj_A 489 -LAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMP 567 (902)
T ss_dssp -CCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEE
T ss_pred -CceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccce
Confidence 68999999999999999 599999999997662 2
Q ss_pred eEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEe-----cCCC
Q 004924 604 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAH-----PLEP 678 (723)
Q Consensus 604 ~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~s-----p~d~ 678 (723)
+..+. .|...|++++||||| +||+|+.|++|++||++++..+.......+ ..|| ... +++++|+ | ||
T Consensus 568 ~~~l~--~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~-~~gh-~~~--V~sv~Fs~~~~~~-Dg 639 (902)
T 2oaj_A 568 STAVH--ANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREI-SGAQ-SAC--VTCIEFVIMEYGD-DG 639 (902)
T ss_dssp EEEEC--CCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGT-CSSC-CCC--EEEEEEEEEECTT-SS
T ss_pred eEEEE--cCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHh-cccc-ccc--eEEEEEEEEecCC-CC
Confidence 34443 478999999999999 999999999999999988876643221110 0133 333 4599999 8 64
Q ss_pred ---CEEEEEECCCcEEEEec---CCCce
Q 004924 679 ---NRIALGLTNGRVHVIEP---LESEV 700 (723)
Q Consensus 679 ---~~las~s~Dg~v~iWd~---~~~~~ 700 (723)
.+|++|+.|++|++||+ .+|+.
T Consensus 640 ~~~~~l~sgs~D~tv~~wd~~p~~~g~~ 667 (902)
T 2oaj_A 640 YSSILMVCGTDMGEVITYKILPASGGKF 667 (902)
T ss_dssp SEEEEEEEEETTSEEEEEEEEECGGGCE
T ss_pred CcceEEEEEecCCcEEEEEEecCCCCcE
Confidence 79999999999999999 66553
No 37
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.3e-36 Score=331.53 Aligned_cols=321 Identities=10% Similarity=0.020 Sum_probs=253.7
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccc
Q 004924 331 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 410 (723)
Q Consensus 331 ~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~ 410 (723)
..++|+|+++++++.|+.+++|++... ..... +.. | ..+....|+|+|++|++|+.||.|++||+.++.
T Consensus 62 ~~~s~~g~~l~~~~~d~~v~i~d~~~~----~~~~~-~~~--~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--- 130 (420)
T 3vl1_A 62 NTFEKVGSHLYKARLDGHDFLFNTIIR----DGSKM-LKR--A-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL--- 130 (420)
T ss_dssp CEEEEEETTEEEEEETTEEEEEECCSE----ETTTT-SCS--C-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE---
T ss_pred eeeeecCCeEEEEEcCCcEEEEEeccc----ceeeE-Eec--C-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc---
Confidence 348999999999999999999998742 22111 222 3 445556789999999999999999999976322
Q ss_pred cccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEc
Q 004924 411 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 487 (723)
Q Consensus 411 g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~ 487 (723)
...... +|...|.+++|+ +++|++|+ ||.|++||+.+++.+..+.+|...|.+++|+
T Consensus 131 ------------------~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 131 ------------------QREIDQ--AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp ------------------EEEETT--SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred ------------------eeeecc--cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence 122111 699999999999 88999999 9999999999999999999999999999999
Q ss_pred CCC-eEEEEECCCcEEEEeCCCCcEEEEEcC---cCCcEEEEE---------------------EcCCCCEEEEEeCCCc
Q 004924 488 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKG---HQNRITCLA---------------------YSLSLNVLVSSGADAQ 542 (723)
Q Consensus 488 p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~---~~~~i~~l~---------------------~spdg~~l~s~s~dg~ 542 (723)
|++ .|++|+.||.|++||+++++.+..+.. |...+.++. |+|+++++++++.||.
T Consensus 191 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 270 (420)
T 3vl1_A 191 DRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV 270 (420)
T ss_dssp TTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSC
T ss_pred CCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCe
Confidence 999 999999999999999999999998875 444555554 5789999999999999
Q ss_pred EEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCC-EEEE-EcCCcEEEEECCCCce-eEEecCCCCCCCeEEE
Q 004924 543 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQIDVYEAPTLNH-TSQLVPDKMDLPITYA 619 (723)
Q Consensus 543 I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~-~l~~-s~dg~I~vwd~~~~~~-~~~~~~~~h~~~v~~l 619 (723)
|++||++++. .+..+..+|. ..|.+++|+|++. ++++ +.||.|++||+++++. +..+.. .|...+.++
T Consensus 271 i~i~d~~~~~-----~~~~~~~~~~---~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-~~~~~v~~~ 341 (420)
T 3vl1_A 271 ITVHNVFSKE-----QTIQLPSKFT---CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI-NEGTPINNV 341 (420)
T ss_dssp EEEEETTTCC-----EEEEECCTTS---SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE-STTSCEEEE
T ss_pred EEEEECCCCc-----eeEEcccccC---CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc-cCCCCceEE
Confidence 9999999863 2333445565 7899999999998 8888 5899999999998754 566654 357778887
Q ss_pred EEeeCCcEEEEEeCCCcEEEEECCCCcEEEEe---ecccccCCCCccCccceEEEEEecCCCC---EEEEEECCCcEEEE
Q 004924 620 TYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI---NLTAYAQPGTISLELYPLVIAAHPLEPN---RIALGLTNGRVHVI 693 (723)
Q Consensus 620 ~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~---~~~~~~~~g~~~~~v~~~~v~~sp~d~~---~las~s~Dg~v~iW 693 (723)
. ++++++|++++.||.|++|++........+ ..... ..+ +...+. +++|+| ++. .+++++.+|.+.+|
T Consensus 342 ~-~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~-~~~-~~~~v~--~~~~s~-~~~~~g~l~a~g~~g~~~~~ 415 (420)
T 3vl1_A 342 Y-FAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTF-LVS-NDDAVS--QFCYVS-DDESNGEVLEVGKNNFCALY 415 (420)
T ss_dssp E-EETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEE-ECC-SSCCCC--EEEEEC-CSSSSCEEEEEETTTEEEEE
T ss_pred E-eCCCCEEEEecCCccEEEEeccCCCCCccceeccCccE-Ecc-CCcceE--EEEEcc-CCCCcceEEEEcCCceEEEE
Confidence 4 568899999999999999998874322111 11111 112 244455 999999 788 77888889999999
Q ss_pred ecCC
Q 004924 694 EPLE 697 (723)
Q Consensus 694 d~~~ 697 (723)
++++
T Consensus 416 ~~~~ 419 (420)
T 3vl1_A 416 NLSN 419 (420)
T ss_dssp ESCC
T ss_pred eccC
Confidence 9875
No 38
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.5e-35 Score=309.19 Aligned_cols=272 Identities=13% Similarity=0.151 Sum_probs=226.3
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccc
Q 004924 331 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 410 (723)
Q Consensus 331 ~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~ 410 (723)
..|+|+|+++++++.||+|++||+.+ +..... +.. |...|.+++|+|++++|++|+.|++|++||+.++..
T Consensus 19 ~~fsp~~~~l~s~~~dg~v~lWd~~~----~~~~~~-~~~--~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~-- 89 (304)
T 2ynn_A 19 IDFHPTEPWVLTTLYSGRVELWNYET----QVEVRS-IQV--TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-- 89 (304)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTT----TEEEEE-EEC--CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE--
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCC----CceeEE-eec--cCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcE--
Confidence 34889999999999999999999984 333322 343 899999999999999999999999999999874322
Q ss_pred cccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCC-cEEEEEeCCCCCeEEEEE
Q 004924 411 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYFIL 486 (723)
Q Consensus 411 g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~-~~~~~~~~~~~~v~~l~~ 486 (723)
. ..+. +|...|.+++|+ +.++++|+ ||+|++||+.++ .....+.+|...|.+++|
T Consensus 90 ---~----------------~~~~--~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~ 148 (304)
T 2ynn_A 90 ---V----------------VDFE--AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148 (304)
T ss_dssp ---E----------------EEEE--CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEE
T ss_pred ---E----------------EEEe--CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEE
Confidence 1 1111 699999999999 88999999 999999999887 455678899999999999
Q ss_pred cC-CC-eEEEEECCCcEEEEeCCCCcEEEEEc-CcCCcEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCceeeceeeee
Q 004924 487 LP-QD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 561 (723)
Q Consensus 487 ~p-~~-~l~sgs~dg~I~iwd~~~~~~~~~l~-~~~~~i~~l~~sp--dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~ 561 (723)
+| ++ .+++|+.|++|++||+.++.....+. +|...+..+.|+| ++.++++|+.|++|++||+++++ .+.
T Consensus 149 ~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~-----~~~- 222 (304)
T 2ynn_A 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-----CVA- 222 (304)
T ss_dssp CTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE-----EEE-
T ss_pred CCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc-----cce-
Confidence 99 45 99999999999999998877665554 5668899999987 77899999999999999999853 344
Q ss_pred eecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCc--EEEEEeCCCcEE
Q 004924 562 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK--CIYVSCKSGHVK 638 (723)
Q Consensus 562 ~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~--~l~sgs~dg~I~ 638 (723)
...+|. ..|.+++|+|++.+|++ +.||.|++||+.+++....+.. |...+.+++|+|++. ++++|+.|| +.
T Consensus 223 ~~~~h~---~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~asg~~~g-~~ 296 (304)
T 2ynn_A 223 TLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV--GLERSWCIATHPTGRKNYIASGFDNG-FT 296 (304)
T ss_dssp EEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC--SSSSEEEEEECTTCGGGCEEEEETTE-EE
T ss_pred eeCCCC---CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccC--CCccEEEEEECCCCCceEEEEecCCc-eE
Confidence 234666 78999999999999998 5999999999999999888864 578899999999875 577776555 66
Q ss_pred EEECCC
Q 004924 639 VFDTST 644 (723)
Q Consensus 639 iwd~~~ 644 (723)
+|++..
T Consensus 297 ~~~~~~ 302 (304)
T 2ynn_A 297 VLSLGN 302 (304)
T ss_dssp EEECC-
T ss_pred EEEecc
Confidence 777654
No 39
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.5e-34 Score=302.32 Aligned_cols=273 Identities=12% Similarity=0.121 Sum_probs=229.2
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccc
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 412 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~ 412 (723)
++|+|+++++++.||.|++|+..+ +.+... +.+ |...|.+++|+|+|++|++|+.|+.|++||+.++..
T Consensus 31 ~s~~~~~l~s~~~dg~i~iw~~~~----~~~~~~-~~~--h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~---- 99 (312)
T 4ery_A 31 FSPNGEWLASSSADKLIKIWGAYD----GKFEKT-ISG--HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---- 99 (312)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTT----CCEEEE-ECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE----
T ss_pred ECCCCCEEEEeeCCCeEEEEeCCC----cccchh-hcc--CCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE----
Confidence 788999999999999999999874 444433 444 999999999999999999999999999999874322
Q ss_pred cceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCC
Q 004924 413 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ 489 (723)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~ 489 (723)
+..+. +|...|.+++|+ ++++++|+ ||.|++||+.+++.+..+..|...|.+++|+|+
T Consensus 100 -----------------~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (312)
T 4ery_A 100 -----------------LKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 160 (312)
T ss_dssp -----------------EEEEE--CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred -----------------EEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCC
Confidence 11111 699999999999 88999999 999999999999999999999999999999999
Q ss_pred C-eEEEEECCCcEEEEeCCCCcEEEEEc-CcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCC
Q 004924 490 D-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 567 (723)
Q Consensus 490 ~-~l~sgs~dg~I~iwd~~~~~~~~~l~-~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~ 567 (723)
+ .+++|+.||.|++||+++++.+..+. .+...+.+++|+|+++++++++.|+.|++||+++++. +. ...+|.
T Consensus 161 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----~~-~~~~~~ 234 (312)
T 4ery_A 161 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-----LK-TYTGHK 234 (312)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE-----EE-EECSSC
T ss_pred CCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-----EE-EEEecC
Confidence 9 99999999999999999999887764 4667899999999999999999999999999998643 33 222333
Q ss_pred CCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEe--CCCcEEEEECC
Q 004924 568 PETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC--KSGHVKVFDTS 643 (723)
Q Consensus 568 ~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs--~dg~I~iwd~~ 643 (723)
.....+......+++.++++ +.||.|++||+.+++.+..+. +|...|.+++|+|+++++++++ .|+.|++|+..
T Consensus 235 ~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 235 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ--GHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhh--ccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 11122333334467888888 589999999999999988886 4689999999999999999987 69999999864
No 40
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.1e-34 Score=317.18 Aligned_cols=311 Identities=18% Similarity=0.226 Sum_probs=260.3
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccc
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 412 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~ 412 (723)
.+++|+++++++.||+|++|++.+ +.+... +.+ |...|++++|+ +.++++|+.||+|++||+.++.
T Consensus 125 ~~~~g~~l~sg~~dg~i~vwd~~~----~~~~~~-~~~--h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~----- 190 (445)
T 2ovr_B 125 LQFCGNRIVSGSDDNTLKVWSAVT----GKCLRT-LVG--HTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE----- 190 (445)
T ss_dssp EEEETTEEEEEETTSCEEEEETTT----CCEEEE-CCC--CSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE-----
T ss_pred EEEcCCEEEEEECCCcEEEEECCC----CcEEEE-EcC--CCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc-----
Confidence 445688999999999999999984 444433 555 99999999998 5699999999999999977432
Q ss_pred cceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-
Q 004924 413 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD- 490 (723)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~- 490 (723)
.+.... +|...|.+++|+++.+++|+ ||+|++||+.+++.+..+.+|...|.+++| ++
T Consensus 191 ----------------~~~~~~--~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~ 250 (445)
T 2ovr_B 191 ----------------CIHTLY--GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGR 250 (445)
T ss_dssp ----------------EEEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSS
T ss_pred ----------------EEEEEC--CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCC
Confidence 122111 69999999999988899999 999999999999999999999999999999 67
Q ss_pred eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCC
Q 004924 491 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 570 (723)
Q Consensus 491 ~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~ 570 (723)
.+++|+.||.|++||+++++.+..+.+|...|.++.| ++..+++++.||.|++||+++++. +. ...+|.
T Consensus 251 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~-----~~-~~~~~~--- 319 (445)
T 2ovr_B 251 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC-----IH-TLTGHQ--- 319 (445)
T ss_dssp CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCE-----EE-EECCCC---
T ss_pred EEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCE-----EE-EEcCCc---
Confidence 9999999999999999999999999999999999999 789999999999999999998643 33 233454
Q ss_pred CCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCC-CCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEE
Q 004924 571 TIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELR 648 (723)
Q Consensus 571 ~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~-~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~ 648 (723)
..+.++.++ +.++++ +.||.|++||+++++.+..+... .|...|.+++|+ +++|++|+.||.|++||+.+++.+
T Consensus 320 ~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~ 395 (445)
T 2ovr_B 320 SLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFI 395 (445)
T ss_dssp SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred ccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCcee
Confidence 677777775 568887 58999999999999998888642 368899999995 689999999999999999999988
Q ss_pred EEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCc----EEEEecCCC
Q 004924 649 CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR----VHVIEPLES 698 (723)
Q Consensus 649 ~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~----v~iWd~~~~ 698 (723)
..+.... .+.+...++ +++|+| ++.++|+|+.||+ |.|||+...
T Consensus 396 ~~~~~~~---~~~~~~~v~--~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 396 RNLVTLE---SGGSGGVVW--RIRASN-TKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEECT---TGGGTCEEE--EEEECS-SEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred eeeeccc---cCCCCceEE--EEEecC-CEEEEEEcccCCCCccEEEEEECCCC
Confidence 8774211 111344455 999999 8999999999998 999999653
No 41
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.7e-35 Score=341.97 Aligned_cols=293 Identities=15% Similarity=0.194 Sum_probs=239.0
Q ss_pred CCCCceEEEEEeCCC-CEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--
Q 004924 372 SFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 448 (723)
Q Consensus 372 ~h~~~V~~l~fspdg-~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-- 448 (723)
+|.+.|++++|+|++ ++|+|||.|++|++|++.......+ .....+. +|...|.+++|+
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~----------------~~~~~~~--~h~~~v~~v~~s~~ 441 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG----------------VAQRRLT--GHSHFVEDVVLSSD 441 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC----------------EEEEEEE--CCSSCEEEEEECTT
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc----------------cccceec--CCCCcEEEEEECCC
Confidence 399999999999875 7999999999999999875322111 1111111 799999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEE---cCcCCcEE
Q 004924 449 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL---KGHQNRIT 523 (723)
Q Consensus 449 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l---~~~~~~i~ 523 (723)
+++|++|+ ||+|++||+.+++....+.+|...|.+++|+|++ .|++|+.|++|++||.......... .+|...|.
T Consensus 442 g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~ 521 (694)
T 3dm0_A 442 GQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVS 521 (694)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEE
T ss_pred CCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEE
Confidence 88999999 9999999999999999999999999999999999 9999999999999998754333322 46889999
Q ss_pred EEEEcCCC--CEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCC
Q 004924 524 CLAYSLSL--NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT 600 (723)
Q Consensus 524 ~l~~spdg--~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~ 600 (723)
+++|+|++ ..+++++.|++|++||++++.. .. ...+|. ..|.+++|+|++++|++ +.|+.|++||+++
T Consensus 522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~-----~~-~~~~h~---~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~ 592 (694)
T 3dm0_A 522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL-----RS-TLAGHT---GYVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592 (694)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETTTCCE-----EE-EECCCS---SCEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred EEEEeCCCCcceEEEEeCCCeEEEEECCCCcE-----EE-EEcCCC---CCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 99999987 5899999999999999998532 23 345666 79999999999999998 5899999999999
Q ss_pred CceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeeccccc---------CCCCccCccceEEE
Q 004924 601 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA---------QPGTISLELYPLVI 671 (723)
Q Consensus 601 ~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~---------~~g~~~~~v~~~~v 671 (723)
++.+..+. +...|.+++|+|++.++++++ |+.|++||+.+++.+..+..+... +..+....++++++
T Consensus 593 ~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 668 (694)
T 3dm0_A 593 GKKLYSLE---ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSL 668 (694)
T ss_dssp TEEEECCB---CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEE
T ss_pred CceEEEec---CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeE
Confidence 99877764 367899999999999888776 566999999999988777532111 00111223456799
Q ss_pred EEecCCCCEEEEEECCCcEEEEecC
Q 004924 672 AAHPLEPNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 672 ~~sp~d~~~las~s~Dg~v~iWd~~ 696 (723)
+|+| ++.+|++|+.||+|+||++.
T Consensus 669 ~~sp-dg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 669 NWSA-DGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EECT-TSSEEEEEETTSEEEEEEC-
T ss_pred EEcC-CCCEEEEEcCCCeEEEEecc
Confidence 9999 89999999999999999985
No 42
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.8e-35 Score=361.51 Aligned_cols=321 Identities=12% Similarity=0.124 Sum_probs=265.0
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccc
Q 004924 331 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 410 (723)
Q Consensus 331 ~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~ 410 (723)
..++|+|+++++++.||+|++|++.+ +..... +.+ |.+.|.+++|+|+|++|++|+.||+|++||+.++..
T Consensus 621 ~~~s~~~~~l~s~~~d~~i~vw~~~~----~~~~~~-~~~--h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~-- 691 (1249)
T 3sfz_A 621 ACFSQDGQRIASCGADKTLQVFKAET----GEKLLD-IKA--HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL-- 691 (1249)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTT----CCEEEE-ECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCC----CCEEEE-ecc--CCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCce--
Confidence 44889999999999999999999984 333332 444 999999999999999999999999999999874322
Q ss_pred cccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe----CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEE
Q 004924 411 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI 485 (723)
Q Consensus 411 g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s----~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~ 485 (723)
+.... +|...|.+++|+ +.++++|+ ||.|++||+.++++...+.+|...|++++
T Consensus 692 -------------------~~~~~--~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~ 750 (1249)
T 3sfz_A 692 -------------------VHTYD--EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCR 750 (1249)
T ss_dssp -------------------EEEEE--CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEE
T ss_pred -------------------EEEEc--CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEE
Confidence 11111 699999999998 34788998 99999999999999999999999999999
Q ss_pred EcCCC-eEEEEECCCcEEEEeCCCCcEEEEE-------------------------------------------------
Q 004924 486 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKL------------------------------------------------- 515 (723)
Q Consensus 486 ~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l------------------------------------------------- 515 (723)
|+|++ .+++|+.||.|++||+.+++....+
T Consensus 751 ~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~ 830 (1249)
T 3sfz_A 751 FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSG 830 (1249)
T ss_dssp ECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCC
T ss_pred EecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCC
Confidence 99999 9999999999999998776544332
Q ss_pred ------cCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E
Q 004924 516 ------KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I 588 (723)
Q Consensus 516 ------~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s 588 (723)
.+|...|.+++|+|++..+++++.||.|++||+.++. .+. ...+|. ..|.+++|+|+|+++++ +
T Consensus 831 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~-----~~~-~~~~h~---~~v~~v~~spdg~~l~s~s 901 (1249)
T 3sfz_A 831 LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL-----KVA-DCRGHL---SWVHGVMFSPDGSSFLTAS 901 (1249)
T ss_dssp EEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE-----EEE-EECCCS---SCEEEEEECTTSSEEEEEE
T ss_pred ceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-----eee-ecCCCc---cceEEEEECCCCCEEEEEe
Confidence 1677889999999999999999999999999999853 233 334666 78999999999999998 5
Q ss_pred cCCcEEEEECCCCce-----------------------------eEEecC------CCCCCCeEEEEEeeCCcEEEEEeC
Q 004924 589 HEGQIDVYEAPTLNH-----------------------------TSQLVP------DKMDLPITYATYSCDGKCIYVSCK 633 (723)
Q Consensus 589 ~dg~I~vwd~~~~~~-----------------------------~~~~~~------~~h~~~v~~l~~spdg~~l~sgs~ 633 (723)
.|+.|++||+.+... ...... ..+...+.+++|+|+++++++|+.
T Consensus 902 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~ 981 (1249)
T 3sfz_A 902 DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDE 981 (1249)
T ss_dssp TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEET
T ss_pred CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcC
Confidence 999999999653110 000000 012567999999999999999999
Q ss_pred CCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCcee
Q 004924 634 SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 701 (723)
Q Consensus 634 dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~ 701 (723)
||.|++|++.+++....+.. |...+. +++|+| ++++|++++.||.|++|++.+++..
T Consensus 982 ~g~i~i~d~~~~~~~~~~~~--------h~~~v~--~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A 982 DGAIKIIELPNNRVFSSGVG--------HKKAVR--HIQFTA-DGKTLISSSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp TSCCEEEETTTTSCEEECCC--------CSSCCC--CEEECS-SSSCEEEECSSSBEEEEETTTTEEE
T ss_pred CCCEEEEEcCCCceeeeccc--------CCCceE--EEEECC-CCCEEEEEcCCCEEEEEECCCCceE
Confidence 99999999999988777653 244555 999999 8999999999999999999987654
No 43
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-34 Score=312.39 Aligned_cols=280 Identities=14% Similarity=0.135 Sum_probs=227.1
Q ss_pred ccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCC----------------CCCCCceEEEEEeCCCCEEEEEE
Q 004924 330 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD----------------NSFGGRVVRLIYSHSGDFLVALT 393 (723)
Q Consensus 330 ~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~----------------~~h~~~V~~l~fspdg~~las~s 393 (723)
...|+|||+++|+++ ++++++|++.+ +..... +.+ ..+...|.+++|+|+|++|++|+
T Consensus 69 ~v~fspdg~~la~g~-~~~v~i~~~~~----g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~ 142 (393)
T 1erj_A 69 CVKFSNDGEYLATGC-NKTTQVYRVSD----GSLVAR-LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 142 (393)
T ss_dssp EEEECTTSSEEEEEC-BSCEEEEETTT----CCEEEE-ECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred EEEECCCCCEEEEEc-CCcEEEEEecC----CCEEEE-ecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEc
Confidence 344899999999976 78999999874 333222 221 01233599999999999999999
Q ss_pred CCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcE
Q 004924 394 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT 470 (723)
Q Consensus 394 ~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~ 470 (723)
.|++|++||+.+... ...+. +|...|.+++|+ +++|++++ |++|++||+.++++
T Consensus 143 ~d~~i~iwd~~~~~~---------------------~~~~~--~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~ 199 (393)
T 1erj_A 143 EDRLIRIWDIENRKI---------------------VMILQ--GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 199 (393)
T ss_dssp TTSCEEEEETTTTEE---------------------EEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred CCCeEEEEECCCCcE---------------------EEEEc--cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee
Confidence 999999999764221 11111 699999999999 88999999 99999999999998
Q ss_pred EEEEeCCCCCeEEEEEcC-CC-eEEEEECCCcEEEEeCCCCcEEEEE-------cCcCCcEEEEEEcCCCCEEEEEeCCC
Q 004924 471 LATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKL-------KGHQNRITCLAYSLSLNVLVSSGADA 541 (723)
Q Consensus 471 ~~~~~~~~~~v~~l~~~p-~~-~l~sgs~dg~I~iwd~~~~~~~~~l-------~~~~~~i~~l~~spdg~~l~s~s~dg 541 (723)
...+. +...+.+++|+| ++ .+++|+.||.|++||+++++.+..+ .+|...|.+++|+|+|+++++|+.|+
T Consensus 200 ~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~ 278 (393)
T 1erj_A 200 SLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 278 (393)
T ss_dssp EEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 87775 456799999999 77 9999999999999999999888777 57999999999999999999999999
Q ss_pred cEEEEeCCCCceee-------ceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCC
Q 004924 542 QLCVWDAVGWKKLC-------SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMD 613 (723)
Q Consensus 542 ~I~vwd~~~~~~~~-------~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~ 613 (723)
+|++||+++..... ..... ...+|. ..|.+++|+|++.+|++ +.|+.|++||+.+++++..+. +|.
T Consensus 279 ~v~~wd~~~~~~~~~~~~~~~~~~~~-~~~~h~---~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~--~h~ 352 (393)
T 1erj_A 279 SVKLWNLQNANNKSDSKTPNSGTCEV-TYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ--GHR 352 (393)
T ss_dssp EEEEEEC---------------CEEE-EEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE--CCS
T ss_pred EEEEEECCCCCCcccccCCCCCcceE-EEeccc---CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC--CCC
Confidence 99999998643211 11122 234565 78999999999999998 589999999999999988876 478
Q ss_pred CCeEEEEEee------CCcEEEEEeCCCcEEEEECCCC
Q 004924 614 LPITYATYSC------DGKCIYVSCKSGHVKVFDTSTL 645 (723)
Q Consensus 614 ~~v~~l~~sp------dg~~l~sgs~dg~I~iwd~~~~ 645 (723)
..|.+++|++ ++++|++|+.||+|++|++...
T Consensus 353 ~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 353 NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp SCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 9999999986 6899999999999999997643
No 44
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-34 Score=307.69 Aligned_cols=292 Identities=15% Similarity=0.171 Sum_probs=247.5
Q ss_pred CceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCC
Q 004924 361 SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD 440 (723)
Q Consensus 361 ~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 440 (723)
...+...+.+ |.+.|++++|+|+|++|++++.||.|++||+.++.. +..+. +|..
T Consensus 21 ~~~~~~~l~~--h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~---------------------~~~~~--~h~~ 75 (369)
T 3zwl_B 21 SHMKAIKLTG--HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER---------------------LGTLD--GHTG 75 (369)
T ss_dssp CSEEEEEEEC--CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE---------------------EEEEC--CCSS
T ss_pred cccccEEEEE--eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh---------------------hhhhh--hcCC
Confidence 3344455665 999999999999999999999999999999764321 11111 6999
Q ss_pred CeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECC-----CcEEEEeCCCCc-
Q 004924 441 SISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKK- 510 (723)
Q Consensus 441 ~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~d-----g~I~iwd~~~~~- 510 (723)
.|.+++|+ +++|++++ ||.|++||+.+++.+..+. +...+.+++|+|++ .+++++.+ |.|++||+.++.
T Consensus 76 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~ 154 (369)
T 3zwl_B 76 TIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSA 154 (369)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTT
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCcc
Confidence 99999999 88999999 9999999999999998887 78899999999999 99999998 999999987653
Q ss_pred ----------EEEEEcCcCC--cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEE
Q 004924 511 ----------TKAKLKGHQN--RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 578 (723)
Q Consensus 511 ----------~~~~l~~~~~--~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~ 578 (723)
....+..|.. .+.+++|+|+++.+++++.||.|++||++++. ..+. ....|. ..|.+++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~-~~~~~~---~~v~~~~~ 226 (369)
T 3zwl_B 155 THELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY----EYVD-SIDLHE---KSISDMQF 226 (369)
T ss_dssp TCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT----EEEE-EEECCS---SCEEEEEE
T ss_pred ceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc----EeEE-EEecCC---CceeEEEE
Confidence 3345555666 99999999999999999999999999998731 2233 233454 78999999
Q ss_pred ccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCC--------------cEEEEECC
Q 004924 579 HPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG--------------HVKVFDTS 643 (723)
Q Consensus 579 spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg--------------~I~iwd~~ 643 (723)
+|++.+|++ +.|+.|++||+++++.+..+. +...+..++|+|+++++++++.++ .+++||..
T Consensus 227 ~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 303 (369)
T 3zwl_B 227 SPDLTYFITSSRDTNSFLVDVSTLQVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI 303 (369)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETT
T ss_pred CCCCCEEEEecCCceEEEEECCCCceeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC
Confidence 999999998 589999999999999988885 478899999999999999999988 89999999
Q ss_pred CCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCce
Q 004924 644 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 700 (723)
Q Consensus 644 ~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~ 700 (723)
+++.+..+..+ ...+ .+++|+| ++++|++++.||.|+||++..+..
T Consensus 304 ~~~~~~~~~~~--------~~~v--~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 304 FEEEIGRVQGH--------FGPL--NTVAISP-QGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp TCCEEEEEECC--------SSCE--EEEEECT-TSSEEEEEETTSEEEEEEECHHHH
T ss_pred CCcchhheecc--------cCcE--EEEEECC-CCCEEEEEcCCCeEEEEECccccc
Confidence 99998888632 3344 4999999 899999999999999999987653
No 45
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.4e-35 Score=363.73 Aligned_cols=343 Identities=13% Similarity=0.122 Sum_probs=283.7
Q ss_pred cccCC--CCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcc
Q 004924 331 STSLP--DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 408 (723)
Q Consensus 331 ~~~sp--dg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~ 408 (723)
..++| ++..+++++.|+.|++||+.+ +.+... +.+ |.+.|++++|+|+|+++++++.||+|++||+.++..
T Consensus 705 ~~~~~~~~~~~l~sg~~d~~v~vwd~~~----~~~~~~-~~~--h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~ 777 (1249)
T 3sfz_A 705 CHFTNKSNHLLLATGSNDFFLKLWDLNQ----KECRNT-MFG--HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777 (1249)
T ss_dssp EEECSSSSCCEEEEEETTSCEEEEETTS----SSEEEE-ECC--CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEE
T ss_pred EEEecCCCceEEEEEeCCCeEEEEECCC----cchhhe-ecC--CCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcc
Confidence 34566 566899999999999999984 444443 444 999999999999999999999999999999876532
Q ss_pred ------------------------------cccccce---eeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEE
Q 004924 409 ------------------------------SLEEENV---NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF 453 (723)
Q Consensus 409 ------------------------------~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~ 453 (723)
++|.... .-.+.+|+..++........ +|...|.+++|+ +.+++
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~ 856 (1249)
T 3sfz_A 778 RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT-GHHSTIQYCDFSPYDHLAV 856 (1249)
T ss_dssp EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEEC-SSSSCCCEEEECSSTTEEE
T ss_pred cceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcC-CCCCceEEEEEcCCCCEEE
Confidence 1111111 11357889888876665443 589999999999 88999
Q ss_pred EEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCC------------------------
Q 004924 454 SAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC------------------------ 507 (723)
Q Consensus 454 s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~------------------------ 507 (723)
+++ ||.|++||+.++.....+.+|...|++++|+|++ .+++++.||.|++||+.
T Consensus 857 ~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 936 (1249)
T 3sfz_A 857 IALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETM 936 (1249)
T ss_dssp EECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEE
T ss_pred EEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcE
Confidence 999 9999999999999999999999999999999999 99999999988888743
Q ss_pred -------------------------------------------------------CCcEEEEEcCcCCcEEEEEEcCCCC
Q 004924 508 -------------------------------------------------------TKKTKAKLKGHQNRITCLAYSLSLN 532 (723)
Q Consensus 508 -------------------------------------------------------~~~~~~~l~~~~~~i~~l~~spdg~ 532 (723)
+++....+.+|...|.+++|+|+|+
T Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~ 1016 (1249)
T 3sfz_A 937 VLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK 1016 (1249)
T ss_dssp EEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSS
T ss_pred EEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCC
Confidence 2334455667889999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCCCC
Q 004924 533 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKM 612 (723)
Q Consensus 533 ~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h 612 (723)
++++++.||.|++||+.+++.. . ..+|. ..|.+++|+|++..++++.|+.|++||+.+++....+. .|
T Consensus 1017 ~l~s~~~dg~i~vwd~~~~~~~-----~--~~~~~---~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~--~~ 1084 (1249)
T 3sfz_A 1017 TLISSSEDSVIQVWNWQTGDYV-----F--LQAHQ---ETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFT--CH 1084 (1249)
T ss_dssp CEEEECSSSBEEEEETTTTEEE-----C--CBCCS---SCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEE--CC
T ss_pred EEEEEcCCCEEEEEECCCCceE-----E--EecCC---CcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEc--cc
Confidence 9999999999999999986432 2 22454 78999999998877666899999999999999888886 46
Q ss_pred CCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEE
Q 004924 613 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV 692 (723)
Q Consensus 613 ~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~i 692 (723)
...|.+++|+|+++++++++.||.|++||+.+++....+.. | ...+. +++|+| ++.+|++++.||+|++
T Consensus 1085 ~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~-------h-~~~v~--~~~~s~-dg~~lat~~~dg~i~v 1153 (1249)
T 3sfz_A 1085 QGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKG-------H-NGCVR--CSAFSL-DGILLATGDDNGEIRI 1153 (1249)
T ss_dssp SSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCC-------C-SSCEE--EEEECS-SSSEEEEEETTSCCCE
T ss_pred CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeecc-------C-CCcEE--EEEECC-CCCEEEEEeCCCEEEE
Confidence 88999999999999999999999999999999987776653 2 33444 999999 8999999999999999
Q ss_pred EecCCCceeeec
Q 004924 693 IEPLESEVEWGK 704 (723)
Q Consensus 693 Wd~~~~~~~w~~ 704 (723)
||+.+++.....
T Consensus 1154 wd~~~~~~~~~~ 1165 (1249)
T 3sfz_A 1154 WNVSDGQLLHSC 1165 (1249)
T ss_dssp EESSSSCCCCCC
T ss_pred EECCCCceEEEe
Confidence 999998765443
No 46
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-35 Score=323.43 Aligned_cols=320 Identities=10% Similarity=0.093 Sum_probs=247.3
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeC-CCCEEEEEECCCcEEEEeccCCcccc
Q 004924 332 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSL 410 (723)
Q Consensus 332 ~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fsp-dg~~las~s~dg~i~iWd~~~~~~~~ 410 (723)
+++|+++.+++++ .|+.. +.+......+ |.+.|++++|+| +|++|++|+.||+|++||+.+...
T Consensus 34 ~f~~~~~~~~~~~------~w~~~-----g~~~~~~~~~--h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~-- 98 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLR-----GKLIATLMEN--EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIV-- 98 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCC-----CCEEEEECTT--TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHT--
T ss_pred hcCCccccccccc------ccccc-----ceEEeeeccC--CCCceEEEEECCCCCCEEEEecCCceEEEeECccccc--
Confidence 3788888888776 47754 3333331254 999999999999 999999999999999999874111
Q ss_pred cccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcC---CCcEEEEEe---------
Q 004924 411 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE---TFQTLATFA--------- 475 (723)
Q Consensus 411 g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~---~~~~~~~~~--------- 475 (723)
+.... .... . +|...|.+++|+ +++|++|+ ||+|++||+. +++....+.
T Consensus 99 ~~~~~-----------~~~~---~--~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~ 162 (437)
T 3gre_A 99 GEVYS-----------SSLT---Y--DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINL 162 (437)
T ss_dssp TCCCS-----------CSEE---E--ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEG
T ss_pred Ccccc-----------eeee---c--cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEc
Confidence 00000 0000 0 489999999999 88999999 9999999994 555444332
Q ss_pred -C--CCCCeEEEE--EcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcC--cCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 004924 476 -N--PPPIATYFI--LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAYSLSLNVLVSSGADAQLCVWD 547 (723)
Q Consensus 476 -~--~~~~v~~l~--~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~--~~~~i~~l~~spdg~~l~s~s~dg~I~vwd 547 (723)
. +...+.++. +++++ .+++|+.||.|++||+++++.+..+.+ |...|++++|+|++.++++|+.||.|++||
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 242 (437)
T 3gre_A 163 KNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWD 242 (437)
T ss_dssp GGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred cCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 1 456677777 56788 999999999999999999999999988 899999999999999999999999999999
Q ss_pred CCCCceeeceeeeeeecCCCCCCCCeEEEEEcc----CCCEEEEE-cCCcEEEEECCCCceeEEecCCC-----------
Q 004924 548 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP----DQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK----------- 611 (723)
Q Consensus 548 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~sp----dg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~----------- 611 (723)
++++. .+.++...|. ..|.+++|+| ++.+++++ .|+.|++||+++++++..+..+.
T Consensus 243 ~~~~~-----~~~~~~~~~~---~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (437)
T 3gre_A 243 IRFNV-----LIRSWSFGDH---APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPI 314 (437)
T ss_dssp TTTTE-----EEEEEBCTTC---EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCB
T ss_pred cCCcc-----EEEEEecCCC---CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccc
Confidence 99853 3443332444 6899996654 67788885 88999999999999887776321
Q ss_pred -------------CCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeeccccc---------------------
Q 004924 612 -------------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA--------------------- 657 (723)
Q Consensus 612 -------------h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~--------------------- 657 (723)
|...|.+++|+ ++++|++|+.||.|++||+.+++....+..+...
T Consensus 315 ~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (437)
T 3gre_A 315 EKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMK 393 (437)
T ss_dssp CSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC
T ss_pred ccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecc
Confidence 56678999999 8899999999999999999999887776642100
Q ss_pred ---------CCCCccCccceEEEEEecC-CCCEEEEEECCCcEEEEe
Q 004924 658 ---------QPGTISLELYPLVIAAHPL-EPNRIALGLTNGRVHVIE 694 (723)
Q Consensus 658 ---------~~g~~~~~v~~~~v~~sp~-d~~~las~s~Dg~v~iWd 694 (723)
..+ |...| ++++|++. ++.+|++|+.||.|+||+
T Consensus 394 ~~~~~~~~~~~~-h~~~I--~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 394 RTSTHSVDDSLY-HHDII--NSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --------------CCCE--EEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccccCcccc-cccce--eeEeeeccCCceEEEEEcCCceEEEeC
Confidence 001 33444 49999983 267999999999999995
No 47
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.1e-34 Score=335.69 Aligned_cols=289 Identities=17% Similarity=0.223 Sum_probs=233.0
Q ss_pred eccCCCC-CCceeeeCCCcccccccCCC-CCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCC
Q 004924 310 ASSGDDS-NDSSCFNDNNQSRESTSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD 387 (723)
Q Consensus 310 ~~~~h~~-v~s~~~~~~~~~~~~~~spd-g~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~ 387 (723)
.+.+|.+ |.++. ++|+ +.++++++.|++|++|++.............+.+ |...|.+++|+|+|+
T Consensus 377 ~l~~H~~~V~~v~-----------~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~--h~~~v~~v~~s~~g~ 443 (694)
T 3dm0_A 377 TMRAHTDMVTAIA-----------TPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG--HSHFVEDVVLSSDGQ 443 (694)
T ss_dssp EEECCSSCEEEEE-----------CCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEEC--CSSCEEEEEECTTSS
T ss_pred hcccCCceeEEEE-----------ecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecC--CCCcEEEEEECCCCC
Confidence 4567877 55544 3443 4789999999999999997532111122223444 999999999999999
Q ss_pred EEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEE
Q 004924 388 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFS 464 (723)
Q Consensus 388 ~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd 464 (723)
+|++|+.||+|+|||+.++.. ...+. +|...|.+++|+ +++|++|+ |++|++||
T Consensus 444 ~l~sgs~Dg~v~vwd~~~~~~---------------------~~~~~--~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd 500 (694)
T 3dm0_A 444 FALSGSWDGELRLWDLAAGVS---------------------TRRFV--GHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500 (694)
T ss_dssp EEEEEETTSEEEEEETTTTEE---------------------EEEEE--CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEeCCCcEEEEECCCCcc---------------------eeEEe--CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence 999999999999999874321 11111 699999999999 88999999 99999999
Q ss_pred cCCCcEEEEE---eCCCCCeEEEEEcCCC---eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEe
Q 004924 465 LETFQTLATF---ANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG 538 (723)
Q Consensus 465 ~~~~~~~~~~---~~~~~~v~~l~~~p~~---~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s 538 (723)
.......... .+|...|.+++|+|++ .+++|+.|++|++||+++++....+.+|.+.|++++|+|+|+++++|+
T Consensus 501 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~ 580 (694)
T 3dm0_A 501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG 580 (694)
T ss_dssp TTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence 8654333322 3688899999999986 799999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCCC-------
Q 004924 539 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDK------- 611 (723)
Q Consensus 539 ~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~------- 611 (723)
.||+|++||+.+++. +..+. .+ ..|.+++|+|++.+++++.++.|++||+++++.+..+....
T Consensus 581 ~Dg~i~iwd~~~~~~-----~~~~~-~~----~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 650 (694)
T 3dm0_A 581 KDGVVLLWDLAEGKK-----LYSLE-AN----SVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKA 650 (694)
T ss_dssp TTSBCEEEETTTTEE-----EECCB-CS----SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC------
T ss_pred CCCeEEEEECCCCce-----EEEec-CC----CcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccc
Confidence 999999999998643 33222 22 67999999999999999888899999999998877664311
Q ss_pred ----------CCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCC
Q 004924 612 ----------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 644 (723)
Q Consensus 612 ----------h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~ 644 (723)
+...+++++|||+|++|++|+.||.|++|++..
T Consensus 651 ~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 651 DNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp ----------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 112478999999999999999999999999853
No 48
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.6e-34 Score=308.48 Aligned_cols=284 Identities=17% Similarity=0.231 Sum_probs=229.6
Q ss_pred CCCceEEEEEeCCC-CEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---
Q 004924 373 FGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 448 (723)
Q Consensus 373 h~~~V~~l~fspdg-~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--- 448 (723)
|...|++++|+|+| ++|++|+.||+|++||+.+... . ......+|...|.+++|+
T Consensus 72 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~----------------~~~~~~~h~~~v~~~~~~~~~ 130 (383)
T 3ei3_B 72 FDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK-----T----------------SFIQGMGPGDAITGMKFNQFN 130 (383)
T ss_dssp CSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC-----E----------------EEECCCSTTCBEEEEEEETTE
T ss_pred CCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc-----c----------------eeeecCCcCCceeEEEeCCCC
Confidence 99999999999999 9999999999999999874332 1 111111599999999998
Q ss_pred CCEEEEEe-CCcEEEEEcCCCcEEEEEeCC---CCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEE
Q 004924 449 GSHLFSAS-GGKISIFSLETFQTLATFANP---PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT 523 (723)
Q Consensus 449 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~---~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~ 523 (723)
++++++++ |+.|++||+.+ .....+..+ ...|.+++|+|++ .+++|+.|+.|++||+ +++.+..+.+|...|.
T Consensus 131 ~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~ 208 (383)
T 3ei3_B 131 TNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVT 208 (383)
T ss_dssp EEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEE
T ss_pred CCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEE
Confidence 47899999 99999999985 555666544 4789999999999 9999999999999999 5788999999999999
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEcc-CCCEEEE-EcCCcEEEEECCC
Q 004924 524 CLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAPT 600 (723)
Q Consensus 524 ~l~~spdg~-~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~sp-dg~~l~~-s~dg~I~vwd~~~ 600 (723)
+++|+|++. .+++++.|+.|++||++++... ...+..+ +|. ..|.+++|+| ++.+|++ +.|+.|++||+++
T Consensus 209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~--~~~---~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDK-NSYIAEM--PHE---KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEEGGGCCST-TCEEEEE--ECS---SCEEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc-cceEEEe--cCC---CceEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence 999999998 9999999999999999873221 1223322 354 7999999999 9999998 5899999999998
Q ss_pred CceeEEecCCC-----CC----------CCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCc
Q 004924 601 LNHTSQLVPDK-----MD----------LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLE 665 (723)
Q Consensus 601 ~~~~~~~~~~~-----h~----------~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~ 665 (723)
++....+..+. |. ..+..++|+|++++ +|+.||.|++||+.+++.+..+..+. +...
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~------~~~~ 354 (383)
T 3ei3_B 283 WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPN------AAGI 354 (383)
T ss_dssp TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTT------BCSC
T ss_pred CccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCC------CCce
Confidence 87766654321 11 34455667777766 77889999999999999988886421 2333
Q ss_pred cceEEEEEecCCCCEEEEEECCCcEEEEecCC
Q 004924 666 LYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 666 v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~ 697 (723)
+. +++|+| ++.+|++|+ ||.|+|||+++
T Consensus 355 ~~--~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 355 IS--LNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CC--EEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred EE--EEEEec-CccEEEEec-CCcEEEEecCC
Confidence 44 779999 899999997 99999999975
No 49
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.8e-34 Score=311.84 Aligned_cols=296 Identities=9% Similarity=0.058 Sum_probs=238.4
Q ss_pred CCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-C-
Q 004924 372 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G- 449 (723)
Q Consensus 372 ~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~- 449 (723)
+|.+.|++++|+| ++|++|+.||+|++|++.+..... .. ....... +|...|.+++|+ .
T Consensus 14 ~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~-----~~----------~~~~~~~--~h~~~v~~~~~~~~~ 74 (397)
T 1sq9_A 14 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN-----PK----------DKSYSHF--VHKSGLHHVDVLQAI 74 (397)
T ss_dssp CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC-----GG----------GGEEEEE--CCTTCEEEEEEEEEE
T ss_pred hhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCccccc-----CC----------CcceEEe--cCCCcEEEEEEeccc
Confidence 3999999999999 799999999999999987543100 00 0011111 699999999999 6
Q ss_pred -------CEEEEEe-CCcEEEEEcCCCcE-----EEEEeCC-----CCCeEEEEEc----CCC-e-EEEEECCCcEEEEe
Q 004924 450 -------SHLFSAS-GGKISIFSLETFQT-----LATFANP-----PPIATYFILL----PQD-L-FAFGFDDSSILVHC 505 (723)
Q Consensus 450 -------~~l~s~s-dg~I~vwd~~~~~~-----~~~~~~~-----~~~v~~l~~~----p~~-~-l~sgs~dg~I~iwd 505 (723)
.+|++++ ||.|++||+.+++. ...+..| ...|.+++|+ |++ . +++|+.||.|++||
T Consensus 75 ~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 154 (397)
T 1sq9_A 75 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK 154 (397)
T ss_dssp ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred ccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEe
Confidence 6899999 99999999998887 8888888 5899999999 999 8 99999999999999
Q ss_pred CCC------CcEEE-----EE-------cCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeec--C
Q 004924 506 PCT------KKTKA-----KL-------KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT--G 565 (723)
Q Consensus 506 ~~~------~~~~~-----~l-------~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~--~ 565 (723)
+.+ ++.+. .+ ..|...|.+++|+|++ .+++++.||.|++||+++++ .+..+.. +
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~ 228 (397)
T 1sq9_A 155 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR-----PLYNFESQHS 228 (397)
T ss_dssp EESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE-----EEEEEECCC-
T ss_pred CCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc-----eeEEEecccc
Confidence 988 66655 66 4488999999999999 99999999999999999853 3332222 1
Q ss_pred C---CCCCCCeEEEEEccCCCEEEE-EcC---CcEEEEECCCCceeEEecCCC-----------CCCCeEEEEEeeCCcE
Q 004924 566 L---VPETTIVNHIQFHPDQIHLLS-IHE---GQIDVYEAPTLNHTSQLVPDK-----------MDLPITYATYSCDGKC 627 (723)
Q Consensus 566 ~---~~~~~~v~~l~~spdg~~l~~-s~d---g~I~vwd~~~~~~~~~~~~~~-----------h~~~v~~l~~spdg~~ 627 (723)
| . ..|.+++|+|++.+|++ +.| +.|++||+++++.+..+.... |...|.+++|+|++++
T Consensus 229 h~~~~---~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 305 (397)
T 1sq9_A 229 MINNS---NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET 305 (397)
T ss_dssp --CCC---CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSE
T ss_pred ccccC---CccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCE
Confidence 4 4 78999999999999998 578 899999999999888886411 6899999999999999
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeecccccCCCC--------------ccCccceEEEEEecCCC----------CEEEE
Q 004924 628 IYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGT--------------ISLELYPLVIAAHPLEP----------NRIAL 683 (723)
Q Consensus 628 l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~--------------~~~~v~~~~v~~sp~d~----------~~las 683 (723)
|++++.||.|++||+.+++.+..+...... .+| |...+ .+++|+| ++ ++|++
T Consensus 306 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~v--~~~~~~~-~g~~~~~~~~~~~~l~s 381 (397)
T 1sq9_A 306 LCSAGWDGKLRFWDVKTKERITTLNMHCDD-IEIEEDILAVDEHGDSLAEPGV--FDVKFLK-KGWRSGMGADLNESLCC 381 (397)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCGGG-CSSGGGCCCBCTTSCBCSSCCE--EEEEEEC-TTTSBSTTCTTSCEEEE
T ss_pred EEEEeCCCeEEEEEcCCCceeEEEecccCc-ccchhhhhccccccccccCCce--eEEEecc-ccccccccccccceEEE
Confidence 999999999999999999998888721100 011 13344 4999999 76 79999
Q ss_pred EECCCcEEEEecCCCc
Q 004924 684 GLTNGRVHVIEPLESE 699 (723)
Q Consensus 684 ~s~Dg~v~iWd~~~~~ 699 (723)
++.||.|++|++.+|+
T Consensus 382 ~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 382 VCLDRSIRWFREAGGK 397 (397)
T ss_dssp EETTTEEEEEEEEC--
T ss_pred ecCCCcEEEEEcCCCC
Confidence 9999999999998763
No 50
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.7e-33 Score=309.83 Aligned_cols=303 Identities=13% Similarity=0.169 Sum_probs=246.6
Q ss_pred CCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCccccccc
Q 004924 334 LPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEE 413 (723)
Q Consensus 334 spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~ 413 (723)
.++++++++++.||+|++||+.+ +.+... +.+ |.+.|++++|+|++ ++++|+.||+|++||+.++..
T Consensus 129 ~~~~~~l~sgs~dg~i~vwd~~~----~~~~~~-~~~--h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~----- 195 (464)
T 3v7d_B 129 QFEDNYVITGADDKMIRVYDSIN----KKFLLQ-LSG--HDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCC----- 195 (464)
T ss_dssp EEETTEEEEEETTSCEEEEETTT----TEEEEE-ECC--CSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEE-----
T ss_pred EECCCEEEEEcCCCcEEEEECCC----CcEEEE-EeC--CCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcE-----
Confidence 33567899999999999999984 444333 444 99999999999998 899999999999999874321
Q ss_pred ceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe----CCEEEEEe-CCcEEEEEcCCCcE------------------
Q 004924 414 NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQT------------------ 470 (723)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s----~~~l~s~s-dg~I~vwd~~~~~~------------------ 470 (723)
+.... +|...|.+++|+ +.++++|+ ||+|++||+.++..
T Consensus 196 ----------------~~~~~--~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 257 (464)
T 3v7d_B 196 ----------------THVFE--GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257 (464)
T ss_dssp ----------------EEEEC--CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGG
T ss_pred ----------------EEEEC--CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccC
Confidence 11111 699999999997 47899999 99999999987652
Q ss_pred -----EEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 004924 471 -----LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLC 544 (723)
Q Consensus 471 -----~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~ 544 (723)
...+.+|...+.++ ++++ .+++|+.||.|++||+.+++++..+.+|...|.+++|+|+++.+++|+.||.|+
T Consensus 258 ~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~ 335 (464)
T 3v7d_B 258 ENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIR 335 (464)
T ss_dssp GCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred CCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence 45667888888876 5677 999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEee
Q 004924 545 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 623 (723)
Q Consensus 545 vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~sp 623 (723)
+||+++++ .+. ...+|. ..|.+++|+ +.++++ +.||.|++||+.++....... +...+..++|+|
T Consensus 336 vwd~~~~~-----~~~-~~~~h~---~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~---~~~~~~~~~~~~ 401 (464)
T 3v7d_B 336 IWDLENGE-----LMY-TLQGHT---ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH---HTNLSAITTFYV 401 (464)
T ss_dssp EEETTTTE-----EEE-EECCCS---SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE---CTTCCCEEEEEE
T ss_pred EEECCCCc-----EEE-EEeCCC---CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec---CCCCccEEEEEe
Confidence 99999864 334 234565 789999998 467887 699999999999888766653 467788899999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEec
Q 004924 624 DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 695 (723)
Q Consensus 624 dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~ 695 (723)
+++++++|+ ||.|++||+.+++.+..+.. + +...+. +++|++ ..++++++.||.+.+|-+
T Consensus 402 ~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~------~-~~~~v~--~v~~~~--~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 402 SDNILVSGS-ENQFNIYNLRSGKLVHANIL------K-DADQIW--SVNFKG--KTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp CSSEEEEEE-TTEEEEEETTTCCEEESCTT------T-TCSEEE--EEEEET--TEEEEEEEETTEEEEEEE
T ss_pred CCCEEEEec-CCeEEEEECCCCcEEehhhc------c-CCCcEE--EEEecC--CEEEEEEEeCCeEEEEEe
Confidence 999999998 89999999999998875332 1 234444 999975 456777777887666543
No 51
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5e-34 Score=305.22 Aligned_cols=299 Identities=10% Similarity=0.092 Sum_probs=237.7
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 450 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 450 (723)
|.+.|.+++|+|+|++|++++.|+.|++|++.+... .....+. +|...|.+++|+ ++
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-------------------~~~~~~~--~h~~~v~~~~~~~~~~ 65 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-------------------VQVHELK--EHNGQVTGVDWAPDSN 65 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-------------------EEEEEEE--CCSSCEEEEEEETTTT
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-------------------Eeeeeec--CCCCcccEEEEeCCCC
Confidence 889999999999999999999999999999764320 0111111 699999999999 88
Q ss_pred EEEEEe-CCcEEEEEcCCCcEEEEE--eCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcE---EEE-EcCcCCcE
Q 004924 451 HLFSAS-GGKISIFSLETFQTLATF--ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT---KAK-LKGHQNRI 522 (723)
Q Consensus 451 ~l~s~s-dg~I~vwd~~~~~~~~~~--~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~---~~~-l~~~~~~i 522 (723)
++++++ ||.|++||+.+++....+ ..|...|.+++|+|++ .+++|+.||.|++||+++++. ... ..+|...|
T Consensus 66 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i 145 (372)
T 1k8k_C 66 RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV 145 (372)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred EEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCe
Confidence 999999 999999999988765554 5788999999999999 999999999999999988763 333 36689999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCce-------------eeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E
Q 004924 523 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKK-------------LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I 588 (723)
Q Consensus 523 ~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~-------------~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s 588 (723)
.+++|+|+++++++++.||.|++||++.... .....+. ...+|. ..|.+++|+|++.+|++ +
T Consensus 146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 146 LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF-ESSSSC---GWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE-ECCCCS---SCEEEEEECSSSSEEEEEE
T ss_pred eEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheE-ecCCCC---CeEEEEEECCCCCEEEEEe
Confidence 9999999999999999999999999752110 0112333 223454 78999999999999998 5
Q ss_pred cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCC--CcEEE--Eeec-----------
Q 004924 589 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST--LELRC--QINL----------- 653 (723)
Q Consensus 589 ~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~--~~~~~--~~~~----------- 653 (723)
.|+.|++||+++++.+..+.. |...|.+++|+|++.++++| .||.|++|++.+ ++... .+..
T Consensus 222 ~d~~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (372)
T 1k8k_C 222 HDSTVCLADADKKMAVATLAS--ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA 298 (372)
T ss_dssp TTTEEEEEEGGGTTEEEEEEC--SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CH
T ss_pred CCCEEEEEECCCCceeEEEcc--CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcch
Confidence 899999999999999888864 57899999999999988888 899999999988 53211 1100
Q ss_pred -----------c--------cccCCCCccCccceEEEEEecCCC---CEEEEEECCCcEEEEecCCCceee
Q 004924 654 -----------T--------AYAQPGTISLELYPLVIAAHPLEP---NRIALGLTNGRVHVIEPLESEVEW 702 (723)
Q Consensus 654 -----------~--------~~~~~g~~~~~v~~~~v~~sp~d~---~~las~s~Dg~v~iWd~~~~~~~w 702 (723)
. .....+| ...|. +++|++.++ .+|++|+.||.|++|++.+++...
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~--~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~~ 366 (372)
T 1k8k_C 299 RERFQNLDKKASSEGSAAAGAGLDSLH-KNSVS--QISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESAL 366 (372)
T ss_dssp HHHHHHCCCCC---------CCCSSSS-SSCEE--EEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHC
T ss_pred hhhhhhcccccccccCccccccccccc-cCCcc--eeEEecCCCcceeeEEEecCCCceEEEEecChhHhh
Confidence 0 1111243 44444 999886477 999999999999999998876543
No 52
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=9.8e-35 Score=318.97 Aligned_cols=290 Identities=16% Similarity=0.210 Sum_probs=223.2
Q ss_pred CCCceEEEEEeC-CCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---
Q 004924 373 FGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 448 (723)
Q Consensus 373 h~~~V~~l~fsp-dg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--- 448 (723)
|...|+|++|+| ++.+||+|+.||+|+|||+.+... .... ...+|.+.|++++|+
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~-------------------~~~~--~~~gH~~~V~~l~f~p~~ 176 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK-------------------PTFI--KGIGAGGSITGLKFNPLN 176 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC-------------------CEEE--CCCSSSCCCCEEEECSSC
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc-------------------eeEE--EccCCCCCEEEEEEeCCC
Confidence 889999999999 567899999999999999874322 0000 111699999999998
Q ss_pred CCEEEEEe-CCcEEEEEcCCCcEEEEEe--CCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEE
Q 004924 449 GSHLFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 524 (723)
Q Consensus 449 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~--~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~ 524 (723)
+++|++|+ ||+|++||+.++....... .+...+.+++|+|++ .|++|+.||.|++||++ ++.+..+.+|...|.+
T Consensus 177 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~ 255 (435)
T 4e54_B 177 TNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTH 255 (435)
T ss_dssp TTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEE
T ss_pred CCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEe
Confidence 67999999 9999999998665433333 334467899999999 99999999999999986 4667788899999999
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCc
Q 004924 525 LAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN 602 (723)
Q Consensus 525 l~~spdg~-~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~ 602 (723)
++|+|++. ++++|+.|+.|++||++++..... +. ...+|. ..|.+++|+|+|.+|++ +.|+.|++||+.+++
T Consensus 256 v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~--~~-~~~~h~---~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 256 VALNPCCDWFLATASVDQTVKIWDLRQVRGKAS--FL-YSLPHR---HPVNAACFSPDGARLLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp EEECTTCSSEEEEEETTSBCCEEETTTCCSSSC--CS-BCCBCS---SCEEECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred eeecCCCceEEEEecCcceeeEEecccccccce--EE-Eeeecc---ccccceeECCCCCeeEEEcCCCEEEEEECCCCc
Confidence 99999886 788999999999999987543221 11 234565 78999999999999998 599999999999988
Q ss_pred eeEEecCCCC----CCCeEEEEEeeCCcEEEEEe------------CCCcEEEEECCCCcEEEEeecccccCCCCccCcc
Q 004924 603 HTSQLVPDKM----DLPITYATYSCDGKCIYVSC------------KSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 666 (723)
Q Consensus 603 ~~~~~~~~~h----~~~v~~l~~spdg~~l~sgs------------~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v 666 (723)
....+..+.+ ...+..+.|+|++.++++++ .++.|++||..+++.+..+.. +|...+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~-------~~~~~v 402 (435)
T 4e54_B 330 CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD-------PESSGI 402 (435)
T ss_dssp SEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC-------SSCCCC
T ss_pred cceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC-------CCCCcE
Confidence 7776654221 12344567777777777664 236799999999998887642 234445
Q ss_pred ceEEE-EEecCCCCEEEEEECCCcEEEEecCCCcee
Q 004924 667 YPLVI-AAHPLEPNRIALGLTNGRVHVIEPLESEVE 701 (723)
Q Consensus 667 ~~~~v-~~sp~d~~~las~s~Dg~v~iWd~~~~~~~ 701 (723)
. ++ +|+| ++.+||+|+ |++|+||++.+++.+
T Consensus 403 ~--s~~~fsp-dg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 403 S--SLNEFNP-MGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp C--CEEEECT-TSSCEEEEC-SSEEEECCCC-----
T ss_pred E--EEEEECC-CCCEEEEEc-CCcEEEEECCcCeee
Confidence 4 55 7999 899999876 789999999988753
No 53
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.9e-33 Score=292.19 Aligned_cols=274 Identities=12% Similarity=0.069 Sum_probs=233.3
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccc
Q 004924 331 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 410 (723)
Q Consensus 331 ~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~ 410 (723)
..++|+|+++++++ ||.|++|++...............+ |...|.+++|+|++++|++++.||.|++|++.+...
T Consensus 57 ~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-- 131 (337)
T 1gxr_A 57 VTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLN--RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP-- 131 (337)
T ss_dssp EEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSC--TTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC----
T ss_pred EEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccC--CCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc--
Confidence 34788999999999 9999999998643233333333333 899999999999999999999999999999874321
Q ss_pred cccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEc
Q 004924 411 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 487 (723)
Q Consensus 411 g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~ 487 (723)
....... .|...|.+++|+ ++++++++ ||.|++||+.+++....+..|...+.+++|+
T Consensus 132 -----------------~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~ 192 (337)
T 1gxr_A 132 -----------------RIKAELT--SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 192 (337)
T ss_dssp -----------------EEEEEEE--CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred -----------------ceeeecc--cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEEC
Confidence 0011111 588999999999 78999999 9999999999999999999999999999999
Q ss_pred CCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCC
Q 004924 488 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 566 (723)
Q Consensus 488 p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~ 566 (723)
|++ .+++++.||.|++||+++++.+..+. +...+.+++|+|+++.+++++.|+.|++||+.+++. .. ...|
T Consensus 193 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-----~~--~~~~ 264 (337)
T 1gxr_A 193 NDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----YQ--LHLH 264 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-----EE--ECCC
T ss_pred CCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-----EE--EcCC
Confidence 999 99999999999999999998888775 788899999999999999999999999999998542 11 2344
Q ss_pred CCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEEC
Q 004924 567 VPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 642 (723)
Q Consensus 567 ~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~ 642 (723)
. ..|.+++|+|+++++++ +.||.|++||+.+++.+... .|...+.+++|+|++++|++++.||.|++|++
T Consensus 265 ~---~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 265 E---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS---KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp S---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE---ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred c---cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe---cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 4 78999999999999998 58999999999999887554 35889999999999999999999999999996
No 54
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=8e-34 Score=302.50 Aligned_cols=292 Identities=14% Similarity=0.155 Sum_probs=233.5
Q ss_pred CCCCceEEEEEeCC----CCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEE
Q 004924 372 SFGGRVVRLIYSHS----GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 447 (723)
Q Consensus 372 ~h~~~V~~l~fspd----g~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 447 (723)
+|.+.|++++|+|+ ...+++++.++.|++|++.++.. ...+ .......|...|.+++|
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~-----~~~~-------------~~~~~~~~~~~v~~~~~ 77 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE-----IRLL-------------QSYVDADADENFYTCAW 77 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC-----EEEE-------------EEEECSCTTCCEEEEEE
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE-----EEee-------------eeccccCCCCcEEEEEe
Confidence 49999999999984 45677777778999999874322 1111 10111137889999999
Q ss_pred e-C-----CEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcC-CC-eEEEEECCCcEEEEeCCCCcEEEEE---
Q 004924 448 R-G-----SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKL--- 515 (723)
Q Consensus 448 s-~-----~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p-~~-~l~sgs~dg~I~iwd~~~~~~~~~l--- 515 (723)
+ . .+|++|+ ||.|++||+.+++.+..+.+|...|.+++|+| ++ .+++|+.||.|++||+++++.+..+
T Consensus 78 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 78 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp EECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred ccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 9 3 4789998 99999999999999999999999999999999 77 9999999999999999999999988
Q ss_pred cCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeecee----------------------eeeeecCCCCCCCCe
Q 004924 516 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF----------------------LHSFQTGLVPETTIV 573 (723)
Q Consensus 516 ~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~----------------------l~~~~~~~~~~~~~v 573 (723)
.+|...|.+++|+|++.++++++.||.|++||+++++...... .......|. ..|
T Consensus 158 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v 234 (366)
T 3k26_A 158 EGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHR---NYV 234 (366)
T ss_dssp TSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCS---SCC
T ss_pred ccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCc---ceE
Confidence 6899999999999999999999999999999999854321100 000112254 789
Q ss_pred EEEEEccCCCEEEE-EcCCcEEEEECCCCce--------------eEEecCCCCCCCeEEEEEeeC--CcEEEEEeCCCc
Q 004924 574 NHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH--------------TSQLVPDKMDLPITYATYSCD--GKCIYVSCKSGH 636 (723)
Q Consensus 574 ~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~--------------~~~~~~~~h~~~v~~l~~spd--g~~l~sgs~dg~ 636 (723)
.+++|+ +.++++ +.|+.|++||+.++.. +..+. .|...|.+++|+|+ +++|++|+.||.
T Consensus 235 ~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~l~~~~~dg~ 310 (366)
T 3k26_A 235 DCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD--YSQCDIWYMRFSMDFWQKMLALGNQVGK 310 (366)
T ss_dssp CEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE--CSSCCSSCCCCEECTTSSEEEEECTTSC
T ss_pred EEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccc--ccCCcEEEEEEcCCCCCcEEEEEecCCc
Confidence 999999 668887 4899999999987654 44444 46788999999999 999999999999
Q ss_pred EEEEECCCCcEEE----EeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCC
Q 004924 637 VKVFDTSTLELRC----QINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 637 I~iwd~~~~~~~~----~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~ 697 (723)
|++||+.+++... .+..+ + +... +.+++|+| ++++|++++.||.|++||+.+
T Consensus 311 i~vwd~~~~~~~~~~~~~~~~~-----~-~~~~--v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 311 LYVWDLEVEDPHKAKCTTLTHH-----K-CGAA--IRQTSFSR-DSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEEEECCSSSGGGCEEEEECCT-----T-CCSC--EEEEEECT-TSSEEEEEETTSEEEEEEC--
T ss_pred EEEEECCCCCCccccceEEccc-----c-cCCc--eEEEEeCC-CCCeEEEEeCCCEEEEEEecC
Confidence 9999999986432 34321 0 1334 44999999 899999999999999999853
No 55
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-35 Score=329.80 Aligned_cols=323 Identities=11% Similarity=0.009 Sum_probs=223.2
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccCCCCcee---EEecCCCCCCCceEEEEEeCC------CCEEEEEECCCcEEEEec
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLINEPSECR---TLLLPDNSFGGRVVRLIYSHS------GDFLVALTQTATHKLWKW 403 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~---~~~l~~~~h~~~V~~l~fspd------g~~las~s~dg~i~iWd~ 403 (723)
.+|+++.+++++.|++|+||++.. +.+. ...+.+ |.+.|++++|+|+ +.+||+++.||+|++||+
T Consensus 169 ~~~~~~~laS~s~D~tI~iWd~~~----~~~~~~~~~~l~~--~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~ 242 (524)
T 2j04_B 169 LNEHLEMFDKEKHSSCIQIFKMNT----STLHCVKVQTIVH--SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEI 242 (524)
T ss_dssp -------------CEEEEEEEEET----TTCCEEEEEEEEE--CCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEEC
T ss_pred cchhhhhhccCCCCceEEEEEccC----CCCCceEEEEEEe--cCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEc
Confidence 468888899999999999999975 2221 122333 7889999999997 579999999999999998
Q ss_pred cCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCc-EEEEEeCCCCC
Q 004924 404 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQ-TLATFANPPPI 480 (723)
Q Consensus 404 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-dg~I~vwd~~~~~-~~~~~~~~~~~ 480 (723)
..+....+.. ...... ...+ .+|...|.+++|+ +..|++|+ ||+|++||+.++. ....+.+|...
T Consensus 243 ~~~~~~~~~~--------~~~~~p--~~~l--~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~ 310 (524)
T 2j04_B 243 IDNATDVHVF--------KMCEKP--SLTL--SLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSY 310 (524)
T ss_dssp CCCSSSSSEE--------ECCCSC--SEEE--CCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSC
T ss_pred CCCccccccc--------eeecCc--eEEE--EcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeeccccc
Confidence 7543200000 000000 0011 1689999999999 77999999 9999999998764 45568899999
Q ss_pred eEEE--EEcCCC--eEEEEECCCcEEEEeCCCCcEEEEEcCcCC--cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 004924 481 ATYF--ILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQN--RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 554 (723)
Q Consensus 481 v~~l--~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~--~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~ 554 (723)
|+++ +|+|++ .|++|+.|++|++||++++++...+.+|.. .|.+++|+|++..+++++.|++|++||++++..
T Consensus 311 V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~- 389 (524)
T 2j04_B 311 ILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA- 389 (524)
T ss_dssp EEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTC-
T ss_pred EEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccc-
Confidence 9999 578876 789999999999999999887777777653 588999999999999999999999999998532
Q ss_pred eceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCC---CCCCCeEEEEEeeCCcEEEE
Q 004924 555 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD---KMDLPITYATYSCDGKCIYV 630 (723)
Q Consensus 555 ~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~---~h~~~v~~l~~spdg~~l~s 630 (723)
+.++ .+|. ..|.+++|+|+|++|++ +.|++|++||+..+ ........ .+...+.+++|+|++..+ .
T Consensus 390 ----~~~l-~gH~---~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~-~ 459 (524)
T 2j04_B 390 ----VHPL-VSRE---TTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKY-R 459 (524)
T ss_dssp ----CEEE-EECS---SCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEE-E
T ss_pred ----ceee-ecCC---CceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeE-E
Confidence 2322 3566 79999999999999998 59999999998653 22221110 112357899999999855 2
Q ss_pred EeCCCcEEEEECC-CCcEEEEeecccccCCCCccCccceEEEEEecCCC---CEEEEEECCCcEEEEecCC
Q 004924 631 SCKSGHVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP---NRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 631 gs~dg~I~iwd~~-~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~---~~las~s~Dg~v~iWd~~~ 697 (723)
... ...+|+.. ++.....+. | |...|+ +++|+| ++ ..+|+|+.||.|+||++.-
T Consensus 460 ~~~--~~~~~~~~~~g~~~~~l~-------g-h~~~V~--~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 460 IDS--SYEVYPLTVNDVSKAKID-------A-HGINIT--CTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp ECC--CCCCCC---------------------CCCSCC--CEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred ccC--CceecccccCCcceeeec-------C-CCceEE--EEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence 222 23344333 355555554 2 244566 999999 64 4999999999999999854
No 56
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.9e-35 Score=313.15 Aligned_cols=242 Identities=13% Similarity=0.135 Sum_probs=193.4
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 450 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 450 (723)
|.+.|++++|+|+|++|++|+.|+.|++|++.++.. .....+ .+|...|.+++|+ ++
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-------------------~~~~~~--~~h~~~v~~~~~s~~~~ 68 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW-------------------KHARTF--SDHDKIVTCVDWAPKSN 68 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-------------------EECCCB--CCCSSCEEEEEECTTTC
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-------------------EEEEEE--ecCCceEEEEEEeCCCC
Confidence 678999999999999999999999999999764210 111111 1699999999999 88
Q ss_pred EEEEEe-CCcEEEEEcCCCc---EEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCc---EEEEEcC-cCCc
Q 004924 451 HLFSAS-GGKISIFSLETFQ---TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK---TKAKLKG-HQNR 521 (723)
Q Consensus 451 ~l~s~s-dg~I~vwd~~~~~---~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~---~~~~l~~-~~~~ 521 (723)
+|++++ ||+|++||+.+++ ....+.+|...|.+++|+|++ .|++|+.|+.|++||+++++ ....+.+ |...
T Consensus 69 ~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~ 148 (377)
T 3dwl_C 69 RIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRST 148 (377)
T ss_dssp CEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSC
T ss_pred EEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCC
Confidence 999999 9999999999877 667778999999999999999 99999999999999999887 4677887 9999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee-------------eceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-
Q 004924 522 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL-------------CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS- 587 (723)
Q Consensus 522 i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~-------------~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~- 587 (723)
|.+++|+|+++++++++.|+.|++||+..+... ....+..+ +|. ..|.+++|+|++++|++
T Consensus 149 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~v~~~~~sp~~~~l~~~ 223 (377)
T 3dwl_C 149 ILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSG---GWVHAVGFSPSGNALAYA 223 (377)
T ss_dssp EEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCS---SSEEEEEECTTSSCEEEE
T ss_pred eEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCC---ceEEEEEECCCCCEEEEE
Confidence 999999999999999999999999999643211 12233323 565 78999999999999998
Q ss_pred EcCCcEEEEECCCCce----eEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECC
Q 004924 588 IHEGQIDVYEAPTLNH----TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 588 s~dg~I~vwd~~~~~~----~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~ 643 (723)
+.|+.|++||+.+++. +..+. .|...|.+++|+|++++|++|+.|+.+ +|+..
T Consensus 224 ~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 224 GHDSSVTIAYPSAPEQPPRALITVK--LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp ETTTEEC-CEECSTTSCEEECCCEE--CSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred eCCCcEEEEECCCCCCcceeeEeec--CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 5899999999999887 55555 468899999999999999999877766 66654
No 57
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.7e-33 Score=301.50 Aligned_cols=293 Identities=12% Similarity=0.109 Sum_probs=218.2
Q ss_pred CCceEEEEEeCCCCEEEEEECCC-------cEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEE
Q 004924 374 GGRVVRLIYSHSGDFLVALTQTA-------THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 446 (723)
Q Consensus 374 ~~~V~~l~fspdg~~las~s~dg-------~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 446 (723)
.-+|++++|+|||++|++||.|. .|++|++.............. ......+|...|.+++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~-------------~~~~l~~~~~~v~s~~ 80 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHIL-------------SEFALEDNDDSPTAID 80 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEE-------------EEEECCTTSCCCCEEE
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeee-------------eEEEccCCCCceEEEE
Confidence 35899999999999999998643 599999875432000000000 0011126888999999
Q ss_pred EeCCEEEEEe------------CCcEEEEEcCCCcE-EE---EE-----eCCCCCeEEEEEcCCC-eEEEE--ECCCcEE
Q 004924 447 LRGSHLFSAS------------GGKISIFSLETFQT-LA---TF-----ANPPPIATYFILLPQD-LFAFG--FDDSSIL 502 (723)
Q Consensus 447 ~s~~~l~s~s------------dg~I~vwd~~~~~~-~~---~~-----~~~~~~v~~l~~~p~~-~l~sg--s~dg~I~ 502 (723)
++++.+++|. |+++++|++.+... +. .. ..+...+.+++|+||| +++++ +.|++|+
T Consensus 81 ~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~ 160 (365)
T 4h5i_A 81 ASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR 160 (365)
T ss_dssp EETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE
T ss_pred eCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE
Confidence 9877777663 56799999866432 11 11 1334568899999999 76544 4789999
Q ss_pred EEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCC
Q 004924 503 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 582 (723)
Q Consensus 503 iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg 582 (723)
+||+.+++++..+. |...|.+++|+|||+++++++.+ .+++|+..++.... .....+|. ..|.+++|+|++
T Consensus 161 iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~----~~~~~~~~---~~v~~v~fspdg 231 (365)
T 4h5i_A 161 IIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIA----RKTDFDKN---WSLSKINFIADD 231 (365)
T ss_dssp EEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEE----EECCCCTT---EEEEEEEEEETT
T ss_pred EeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCccee----eeecCCCC---CCEEEEEEcCCC
Confidence 99999999998886 77889999999999999999855 56666666653221 22334454 689999999999
Q ss_pred CEEEE-EcCC----cEEEEECCCCcee--EEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeeccc
Q 004924 583 IHLLS-IHEG----QIDVYEAPTLNHT--SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTA 655 (723)
Q Consensus 583 ~~l~~-s~dg----~I~vwd~~~~~~~--~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~ 655 (723)
+++++ +.++ .+++||+...... .......|...|++++|||||++||+|+.|++|+|||+.+++++..+..
T Consensus 232 ~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~-- 309 (365)
T 4h5i_A 232 TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ-- 309 (365)
T ss_dssp EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETT--
T ss_pred CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecC--
Confidence 99998 4555 5888998766532 1222235788999999999999999999999999999999998877531
Q ss_pred ccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCC
Q 004924 656 YAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 656 ~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
|| ...|+ +++|+| |+++|||||.|++|+||++...
T Consensus 310 ----gH-~~~V~--~v~fSp-dg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 310 ----AH-SFAIT--EVTISP-DSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp ----SS-SSCEE--EEEECT-TSCEEEEEETTSEEEEEECCTT
T ss_pred ----cc-cCCEE--EEEECC-CCCEEEEEeCCCeEEEEEcCCC
Confidence 33 44455 999999 9999999999999999999653
No 58
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.5e-33 Score=303.40 Aligned_cols=322 Identities=10% Similarity=0.070 Sum_probs=222.4
Q ss_pred cCC-CCCEEEEEeCCCeEEEEeecccCCCCceeEEe---cC---CCCCCCceEEEEEeC-CCCEEEEEECCCcEEEEecc
Q 004924 333 SLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLL---LP---DNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQ 404 (723)
Q Consensus 333 ~sp-dg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~---l~---~~~h~~~V~~l~fsp-dg~~las~s~dg~i~iWd~~ 404 (723)
++| +|+++++++.||.|++|++.+........... .. ..+|...|.+++|+| ++.+|++++.||.|++||+.
T Consensus 51 ~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 130 (408)
T 4a11_B 51 IEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTN 130 (408)
T ss_dssp ECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETT
T ss_pred EecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCC
Confidence 778 89999999999999999998632222211100 00 024999999999999 78899999999999999987
Q ss_pred CCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-----CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCC
Q 004924 405 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFSLETFQTLATFANPP 478 (723)
Q Consensus 405 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-----~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~ 478 (723)
+... .... .+...+.++.|+ +.++++++ +|.|++||+.+++.+..+.+|.
T Consensus 131 ~~~~---------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 186 (408)
T 4a11_B 131 TLQT---------------------ADVF---NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHR 186 (408)
T ss_dssp TTEE---------------------EEEE---ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCC
T ss_pred CCcc---------------------ceec---cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCC
Confidence 4322 1111 267788999998 34889988 9999999999999999999999
Q ss_pred CCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCc-EEEEE---------------cCcCCcEEEEEEcCCCCEEEEEeCC
Q 004924 479 PIATYFILLPQD--LFAFGFDDSSILVHCPCTKK-TKAKL---------------KGHQNRITCLAYSLSLNVLVSSGAD 540 (723)
Q Consensus 479 ~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~-~~~~l---------------~~~~~~i~~l~~spdg~~l~s~s~d 540 (723)
..|.+++|+|++ .+++|+.||.|++||++++. .+..+ .+|...|.+++|+|+++++++++.|
T Consensus 187 ~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 266 (408)
T 4a11_B 187 QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD 266 (408)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT
T ss_pred CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCC
Confidence 999999999999 58999999999999998765 44444 5688999999999999999999999
Q ss_pred CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCCCCCCCeEEEE
Q 004924 541 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYAT 620 (723)
Q Consensus 541 g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~ 620 (723)
|.|++||+.+++............... .........+.+.+++++.++.|++||+.+++.+..+. .|...|.+++
T Consensus 267 g~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~v~~~~ 341 (408)
T 4a11_B 267 NRMRLWNSSNGENTLVNYGKVCNNSKK---GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK--GHYKTVDCCV 341 (408)
T ss_dssp SCEEEEETTTCCBCCCCCCCCCCCCSS---CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC--CCSSCEEEEE
T ss_pred CeEEEEECCCCccceeccccccccccc---cceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec--cCCCeEEEEE
Confidence 999999999865322111110011110 12223333444555666799999999999999998886 4689999999
Q ss_pred EeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecC
Q 004924 621 YSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 621 ~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~ 696 (723)
|+|++++|++|+.||.|++||+.+++.+...... .. ...+.|.....+.+++.|+.+++|+..
T Consensus 342 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 342 FQSNFQELYSGSRDCNILAWVPSLYEPVPDDDET-----------TT--KSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp EETTTTEEEEEETTSCEEEEEECC----------------------------------------------------
T ss_pred EcCCCCEEEEECCCCeEEEEeCCCCCccCCCCce-----------Ee--ccccccccceeecccCccCceeecCCc
Confidence 9999999999999999999999999876654321 11 233444345567778889999999864
No 59
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-33 Score=287.67 Aligned_cols=279 Identities=14% Similarity=0.152 Sum_probs=234.7
Q ss_pred cCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEE
Q 004924 368 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 447 (723)
Q Consensus 368 l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 447 (723)
+.+ |.+.|.+++| |++++|++|+.||.|++||+.+... ..... .|...|.+++|
T Consensus 14 l~~--h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~---------------------~~~~~--~~~~~v~~~~~ 67 (313)
T 3odt_A 14 LKG--HDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWL---------------------GTVVY--TGQGFLNSVCY 67 (313)
T ss_dssp ECC--CSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEE---------------------EEEEE--ECSSCEEEEEE
T ss_pred hhC--CCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEE---------------------EEEee--cCCccEEEEEE
Confidence 554 9999999999 9999999999999999999764221 11111 58899999999
Q ss_pred e--CCEEEEEe-CCcEEEEEcCCC---cEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCC
Q 004924 448 R--GSHLFSAS-GGKISIFSLETF---QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN 520 (723)
Q Consensus 448 s--~~~l~s~s-dg~I~vwd~~~~---~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~ 520 (723)
+ +.++++++ ||.|++|++... +....+.+|...|.+++| ++ .+++|+.||.|++|| .++....+..|..
T Consensus 68 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~ 143 (313)
T 3odt_A 68 DSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNA 143 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSS
T ss_pred CCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCC
Confidence 9 88999999 999999998654 567788899999999999 46 999999999999999 6788889999999
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECC
Q 004924 521 RITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP 599 (723)
Q Consensus 521 ~i~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~ 599 (723)
.+.++.|+| ++..+++++.||.|++||... ....+...|. ..+.+++|+|++.+++++.|+.|++||++
T Consensus 144 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~dg~i~i~d~~ 213 (313)
T 3odt_A 144 SVWDAKVVSFSENKFLTASADKTIKLWQNDK-------VIKTFSGIHN---DVVRHLAVVDDGHFISCSNDGLIKLVDMH 213 (313)
T ss_dssp CEEEEEEEETTTTEEEEEETTSCEEEEETTE-------EEEEECSSCS---SCEEEEEEEETTEEEEEETTSEEEEEETT
T ss_pred ceeEEEEccCCCCEEEEEECCCCEEEEecCc-------eEEEEeccCc---ccEEEEEEcCCCeEEEccCCCeEEEEECC
Confidence 999999988 999999999999999999432 2332333354 78999999999994434799999999999
Q ss_pred CCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCC
Q 004924 600 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 679 (723)
Q Consensus 600 ~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~ 679 (723)
+++.+..+. .|...|.+++|+|++ .+++++.||.|++||+.+++....+..+ ...+. +++|+| ++.
T Consensus 214 ~~~~~~~~~--~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~--------~~~i~--~~~~~~-~~~ 279 (313)
T 3odt_A 214 TGDVLRTYE--GHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP--------AISIW--SVDCMS-NGD 279 (313)
T ss_dssp TCCEEEEEE--CCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS--------SSCEE--EEEECT-TSC
T ss_pred chhhhhhhh--cCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc--------CceEE--EEEEcc-CCC
Confidence 999988886 468999999999999 5889999999999999999988888642 33444 999999 777
Q ss_pred EEEEEECCCcEEEEecCCCcee
Q 004924 680 RIALGLTNGRVHVIEPLESEVE 701 (723)
Q Consensus 680 ~las~s~Dg~v~iWd~~~~~~~ 701 (723)
+++++.||.|++|++.+++..
T Consensus 280 -~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 280 -IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp -EEEEETTSCEEEEESCGGGCC
T ss_pred -EEEEeCCCcEEEEeCCCCcee
Confidence 667999999999999887643
No 60
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.2e-33 Score=331.52 Aligned_cols=322 Identities=13% Similarity=0.151 Sum_probs=257.5
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccc
Q 004924 331 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 410 (723)
Q Consensus 331 ~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~ 410 (723)
..++|+|+++++++.||.|++|++.+ +..... +.+ |...|.+++|+|+|++|++|+.||.|++|++.++..
T Consensus 19 i~~sp~~~~la~~~~~g~v~iwd~~~----~~~~~~-~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-- 89 (814)
T 3mkq_A 19 IDFHPTEPWVLTTLYSGRVEIWNYET----QVEVRS-IQV--TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-- 89 (814)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTT----TEEEEE-EEC--CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE--
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCC----CceEEE-Eec--CCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE--
Confidence 34889999999999999999999874 333322 344 999999999999999999999999999999874322
Q ss_pred cccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCC-cEEEEEeCCCCCeEEEEE
Q 004924 411 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYFIL 486 (723)
Q Consensus 411 g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~-~~~~~~~~~~~~v~~l~~ 486 (723)
+.... +|...|.+++|+ +.++++++ ||.|++||+.++ .....+.+|...|.+++|
T Consensus 90 -------------------~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~ 148 (814)
T 3mkq_A 90 -------------------VVDFE--AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148 (814)
T ss_dssp -------------------EEEEE--CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEE
T ss_pred -------------------EEEEe--cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEE
Confidence 11111 699999999999 88999999 999999999887 677888899999999999
Q ss_pred cC-CC-eEEEEECCCcEEEEeCCCCcEEEEEcCcC-CcEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCceeeceeeee
Q 004924 487 LP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 561 (723)
Q Consensus 487 ~p-~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~-~~i~~l~~sp--dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~ 561 (723)
+| ++ .+++|+.||.|++||+.+++....+..+. ..+.+++|+| ++.++++++.||.|++||+.++. .+..
T Consensus 149 ~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-----~~~~ 223 (814)
T 3mkq_A 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-----CVAT 223 (814)
T ss_dssp ETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE-----EEEE
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----EEEE
Confidence 99 77 99999999999999999888777776654 8999999999 99999999999999999998853 3332
Q ss_pred eecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCc--EEEEEeCCCcEE
Q 004924 562 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK--CIYVSCKSGHVK 638 (723)
Q Consensus 562 ~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~--~l~sgs~dg~I~ 638 (723)
..+|. ..|.+++|+|++.++++ +.||.|++||+.+++....+.. |...+.+++|+|++. +++++ .++.+.
T Consensus 224 -~~~~~---~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~-~~~~~~ 296 (814)
T 3mkq_A 224 -LEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV--GLERSWCIATHPTGRKNYIASG-FDNGFT 296 (814)
T ss_dssp -EECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECC--SSSSEEEEEECTTCGGGEEEEE-ETTEEE
T ss_pred -EcCCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeec--CCCcEEEEEEccCCCceEEEEE-eCCCEE
Confidence 33455 78999999999999998 5899999999999998888864 578999999999987 45554 567788
Q ss_pred EEECCCCcEEEEeecccc-c-----------------------C-----------CCCccCccceEEEEEecCCCCEEEE
Q 004924 639 VFDTSTLELRCQINLTAY-A-----------------------Q-----------PGTISLELYPLVIAAHPLEPNRIAL 683 (723)
Q Consensus 639 iwd~~~~~~~~~~~~~~~-~-----------------------~-----------~g~~~~~v~~~~v~~sp~d~~~las 683 (723)
+|++..+.....+.+... . . .+++.. .+.+++|+| ++.++++
T Consensus 297 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~sp-dg~~la~ 373 (814)
T 3mkq_A 297 VLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDV--FPQSLAHSP-NGRFVTV 373 (814)
T ss_dssp EEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSS--CCSEEEECT-TSSEEEE
T ss_pred EEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCcc--CCceeEECC-CCCEEEE
Confidence 999876543332221000 0 0 011112 234899999 8888888
Q ss_pred EECCCcEEEEecCCC
Q 004924 684 GLTNGRVHVIEPLES 698 (723)
Q Consensus 684 ~s~Dg~v~iWd~~~~ 698 (723)
++ ||.+.+|++...
T Consensus 374 ~~-~~~~~i~~~~~~ 387 (814)
T 3mkq_A 374 VG-DGEYVIYTALAW 387 (814)
T ss_dssp EE-TTEEEEEETTTT
T ss_pred ec-CCEEEEEECccc
Confidence 88 889999997643
No 61
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=7.9e-34 Score=301.64 Aligned_cols=284 Identities=14% Similarity=0.151 Sum_probs=227.4
Q ss_pred CCCceEEEEEeCCCCEEE-EEEC---CCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe
Q 004924 373 FGGRVVRLIYSHSGDFLV-ALTQ---TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR 448 (723)
Q Consensus 373 h~~~V~~l~fspdg~~la-s~s~---dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 448 (723)
|...|.+++|+|+|..++ +|+. ||.|++|++.++.. .. .. .. +|...|.+++|+
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~-----~~--------------~~-~~--~~~~~v~~~~~~ 74 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL-----KL--------------LR-EI--EKAKPIKCGTFG 74 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE-----EE--------------EE-EE--EESSCEEEEECT
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc-----cc--------------ee-ee--cccCcEEEEEEc
Confidence 999999999999997655 5554 89999999874322 00 00 00 488999999999
Q ss_pred -C----CEEEEEe-CCcEEEEEcCCCc-EEEEEeCCCCCeEEEEE------cCCC-eEEEEECCCcEEEEeCCCCc-EEE
Q 004924 449 -G----SHLFSAS-GGKISIFSLETFQ-TLATFANPPPIATYFIL------LPQD-LFAFGFDDSSILVHCPCTKK-TKA 513 (723)
Q Consensus 449 -~----~~l~s~s-dg~I~vwd~~~~~-~~~~~~~~~~~v~~l~~------~p~~-~l~sgs~dg~I~iwd~~~~~-~~~ 513 (723)
. .++++|+ ||.|++||+.+++ .+..+.+|...|.++.| +|++ .+++|+.||.|++||+.+++ .+.
T Consensus 75 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 154 (357)
T 3i2n_A 75 ATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA 154 (357)
T ss_dssp TCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE
T ss_pred CCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce
Confidence 4 7899999 9999999999988 88899999999999965 6788 99999999999999999887 677
Q ss_pred EEcCcCC----cEEEEE----EcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEcc---CC
Q 004924 514 KLKGHQN----RITCLA----YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---DQ 582 (723)
Q Consensus 514 ~l~~~~~----~i~~l~----~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~sp---dg 582 (723)
.+..|.+ .+.++. |+|+++++++++.||.|++||+++++. .. ...|. ..|.+++|+| ++
T Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~~--~~~~~---~~v~~~~~~~~~~~~ 224 (357)
T 3i2n_A 155 NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-----RW--ETNIK---NGVCSLEFDRKDISM 224 (357)
T ss_dssp EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-----EE--EEECS---SCEEEEEESCSSSSC
T ss_pred eccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-----ee--ecCCC---CceEEEEcCCCCCCC
Confidence 7866554 899998 788999999999999999999998643 22 12333 7899999999 89
Q ss_pred CEEEE-EcCCcEEEEECCCCceeEEec---CCCCCCCeEEEEEeeCCc-EEEEEeCCCcEEEEECCCCcE----------
Q 004924 583 IHLLS-IHEGQIDVYEAPTLNHTSQLV---PDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLEL---------- 647 (723)
Q Consensus 583 ~~l~~-s~dg~I~vwd~~~~~~~~~~~---~~~h~~~v~~l~~spdg~-~l~sgs~dg~I~iwd~~~~~~---------- 647 (723)
.++++ +.||.|++||+++++....+. ...|...|.+++|+|+++ ++++|+.||.|++||+.++..
T Consensus 225 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~ 304 (357)
T 3i2n_A 225 NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIE 304 (357)
T ss_dssp CEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCC
T ss_pred CEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCc
Confidence 99998 589999999998776554442 124689999999999998 899999999999999986542
Q ss_pred ---------EEEeecccccCCCCccCccceEEEEEecCCCCEEE-EEECCCcEEEEecCCCc
Q 004924 648 ---------RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LGLTNGRVHVIEPLESE 699 (723)
Q Consensus 648 ---------~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la-s~s~Dg~v~iWd~~~~~ 699 (723)
+..+. + |...+. +++|+| ++.+|+ +++.||.|+||++.+.+
T Consensus 305 ~~~~~~~~~~~~~~-------~-~~~~v~--~~~~s~-~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 305 MGVAGSVSLLQNVT-------L-STQPIS--SLDWSP-DKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp CCCCCEEEEEEEEE-------C-CSSCEE--EEEECS-SSTTEEEEEETTSEEEEEEECC--
T ss_pred cccccccceeeccc-------c-CCCCee--EEEEcC-CCCeEEEEecCCCcEEEEECCCcc
Confidence 23332 2 234444 999999 788887 89999999999998754
No 62
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.5e-33 Score=303.12 Aligned_cols=277 Identities=14% Similarity=0.195 Sum_probs=228.7
Q ss_pred CCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccce
Q 004924 336 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 415 (723)
Q Consensus 336 dg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~ 415 (723)
++..+++++.|+.|++|++.+ +.+...... .|...|.+++|+|+|++|++|+.||.|++||+.++..
T Consensus 102 s~~~l~~~~~d~~v~lw~~~~----~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~------- 168 (401)
T 4aez_A 102 SNLNVVAVALERNVYVWNADS----GSVSALAET--DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK------- 168 (401)
T ss_dssp CTTSEEEEEETTEEEEEETTT----CCEEEEEEC--CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-------
T ss_pred cCCCEEEEECCCeEEEeeCCC----CcEeEeeec--CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE-------
Confidence 345688899999999999984 444433222 2889999999999999999999999999999774321
Q ss_pred eeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcC-CCcEEEEEeCCCCCeEEEEEcCCC-eE
Q 004924 416 NMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLE-TFQTLATFANPPPIATYFILLPQD-LF 492 (723)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~I~vwd~~-~~~~~~~~~~~~~~v~~l~~~p~~-~l 492 (723)
+.... +|...|.+++|+++++++++ ||.|++||+. .+.....+.+|...|.+++|+|++ .+
T Consensus 169 --------------~~~~~--~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 232 (401)
T 4aez_A 169 --------------LRTMA--GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQL 232 (401)
T ss_dssp --------------EEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred --------------EEEec--CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEE
Confidence 11111 69999999999988999999 9999999998 567788889999999999999999 99
Q ss_pred EEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCC-EEEEEe--CCCcEEEEeCCCCceeeceeeeeeecCCCCC
Q 004924 493 AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 569 (723)
Q Consensus 493 ~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~-~l~s~s--~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~ 569 (723)
++|+.||.|++||+++++.+..+.+|...|.+++|+|++. .+++++ .|+.|++||+.++.. +..+. +.
T Consensus 233 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~-----~~~~~--~~-- 303 (401)
T 4aez_A 233 ASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR-----VNTVD--AG-- 303 (401)
T ss_dssp EEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE-----EEEEE--CS--
T ss_pred EEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE-----EEEEe--CC--
Confidence 9999999999999999999999999999999999999774 566654 799999999998643 33232 22
Q ss_pred CCCeEEEEEccCCCEEEE--E-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCc
Q 004924 570 TTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 646 (723)
Q Consensus 570 ~~~v~~l~~spdg~~l~~--s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~ 646 (723)
..|.+++|+|+++++++ + .||.|++||+.+++.........|...|.+++|+|+|++|++++.||.|++|++.+++
T Consensus 304 -~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 304 -SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp -SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred -CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 68999999999999998 3 6999999999987766655444678999999999999999999999999999999998
Q ss_pred EEEEe
Q 004924 647 LRCQI 651 (723)
Q Consensus 647 ~~~~~ 651 (723)
.+...
T Consensus 383 ~~~~~ 387 (401)
T 4aez_A 383 HVKRP 387 (401)
T ss_dssp -----
T ss_pred ccccc
Confidence 76654
No 63
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-33 Score=305.23 Aligned_cols=293 Identities=11% Similarity=0.124 Sum_probs=238.3
Q ss_pred CCCceEEEEEeCCCC-EEEEEECCCcEEEEec----cCCcccccccceeee-eEEE-ecCCCeeeeeccCCCCCCCeEEE
Q 004924 373 FGGRVVRLIYSHSGD-FLVALTQTATHKLWKW----QSNKQSLEEENVNME-SQLY-QPSSKLVMTNDIAADPKDSISCF 445 (723)
Q Consensus 373 h~~~V~~l~fspdg~-~las~s~dg~i~iWd~----~~~~~~~g~~~~~~~-~~~~-~~~~~~~~~~~~~~~h~~~V~~v 445 (723)
|.+.|.+++|+|+|+ +||+|+.||.|++|++ .++.. ..... ...+ .+..+. ....+|...|.++
T Consensus 44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~ 114 (425)
T 1r5m_A 44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKK-----YWKLTIIAELRHPFALS----ASSGKTTNQVTCL 114 (425)
T ss_dssp ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC-----------CEEEEEEEEEECCCCCC----------CBCEEEE
T ss_pred ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccc-----ccccccccccccccccc----ccccCCCCceEEE
Confidence 779999999999999 9999999999999998 53321 00000 0000 000000 0001378899999
Q ss_pred EEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCc
Q 004924 446 ALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 521 (723)
Q Consensus 446 ~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~ 521 (723)
+|+ +++|++++ ||.|++|| .+++.+..+..|...|.+++|+|++ .+++++.||.|++||+.+++.+..+..+...
T Consensus 115 ~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 193 (425)
T 1r5m_A 115 AWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETG 193 (425)
T ss_dssp EECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---
T ss_pred EEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccC
Confidence 999 88999999 99999999 6788899999999999999999999 9999999999999999999999999887776
Q ss_pred ---------------EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEE
Q 004924 522 ---------------ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 586 (723)
Q Consensus 522 ---------------i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~ 586 (723)
+.++.|+|++ .+++++.||.|++||+.+++. +. ....|. ..|.+++|+|++++|+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~-----~~-~~~~~~---~~i~~~~~~~~~~~l~ 263 (425)
T 1r5m_A 194 GSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTP-----TG-KLIGHH---GPISVLEFNDTNKLLL 263 (425)
T ss_dssp ------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSC-----SE-EECCCS---SCEEEEEEETTTTEEE
T ss_pred ccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCce-----ee-eeccCC---CceEEEEECCCCCEEE
Confidence 8999999985 588999999999999998532 23 223455 7899999999999999
Q ss_pred E-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCc
Q 004924 587 S-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLE 665 (723)
Q Consensus 587 ~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~ 665 (723)
+ +.|+.|++||+++++.+..+. .|...|.+++|+|++ ++++++.||.|++||+.+++.+..+..+ ...
T Consensus 264 ~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~--------~~~ 332 (425)
T 1r5m_A 264 SASDDGTLRIWHGGNGNSQNCFY--GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD--------GVP 332 (425)
T ss_dssp EEETTSCEEEECSSSBSCSEEEC--CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT--------TCC
T ss_pred EEcCCCEEEEEECCCCccceEec--CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC--------Ccc
Confidence 8 589999999999998888875 468899999999999 9999999999999999999988877632 334
Q ss_pred cceEEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 666 LYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 666 v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
+.+++|+| ++++|++++.||.|++|++.+++
T Consensus 333 --i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 333 --IFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp --EEEEEECT-TSSEEEEEETTSCEEEEECHHHH
T ss_pred --EEEEEEcC-CCCEEEEEECCCeEEEEECCCCc
Confidence 44999999 89999999999999999998876
No 64
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-33 Score=287.63 Aligned_cols=291 Identities=11% Similarity=0.080 Sum_probs=238.0
Q ss_pred cceeeccCCCC-CCceeeeCCCcccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeC
Q 004924 306 RPLDASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH 384 (723)
Q Consensus 306 ~~~~~~~~h~~-v~s~~~~~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fsp 384 (723)
...+.+.+|.+ |.++. + |+++++++++.||.|++|++.+ ...... +.. |...|.+++|+|
T Consensus 9 ~~~~~l~~h~~~v~~~~-----------~-~~~~~l~s~~~dg~v~vw~~~~----~~~~~~-~~~--~~~~v~~~~~~~ 69 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVV-----------A-VDDSKVASVSRDGTVRLWSKDD----QWLGTV-VYT--GQGFLNSVCYDS 69 (313)
T ss_dssp EEEEEECCCSSCEEEEE-----------E-EETTEEEEEETTSEEEEEEESS----SEEEEE-EEE--CSSCEEEEEEET
T ss_pred HHHHHhhCCCCCcEEEE-----------e-cCCCEEEEEEcCCcEEEEECCC----CEEEEE-eec--CCccEEEEEECC
Confidence 45566667776 44433 4 6788899999999999999974 443333 333 899999999999
Q ss_pred CCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCcEEEE
Q 004924 385 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIF 463 (723)
Q Consensus 385 dg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~I~vw 463 (723)
++++|++++.||.+++|++..... +....... +|...|.+++|+++++++++ ||.|++|
T Consensus 70 ~~~~l~~~~~dg~i~~~~~~~~~~------------------~~~~~~~~--~~~~~i~~~~~~~~~l~~~~~d~~i~~~ 129 (313)
T 3odt_A 70 EKELLLFGGKDTMINGVPLFATSG------------------EDPLYTLI--GHQGNVCSLSFQDGVVISGSWDKTAKVW 129 (313)
T ss_dssp TTTEEEEEETTSCEEEEETTCCTT------------------SCC-CEEC--CCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred CCCEEEEecCCCeEEEEEeeecCC------------------CCcccchh--hcccCEEEEEecCCEEEEEeCCCCEEEE
Confidence 999999999999999999764221 11111111 69999999999988999999 9999999
Q ss_pred EcCCCcEEEEEeCCCCCeEEEEEcC-CC-eEEEEECCCcEEEEeCCCCcEEEEEcC-cCCcEEEEEEcCCCCEEEEEeCC
Q 004924 464 SLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGAD 540 (723)
Q Consensus 464 d~~~~~~~~~~~~~~~~v~~l~~~p-~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~-~~~~i~~l~~spdg~~l~s~s~d 540 (723)
| .++....+..|...+.+++|+| ++ .+++++.||.|++|| .++....+.. |...+.+++|+|++. +++++.|
T Consensus 130 d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d 204 (313)
T 3odt_A 130 K--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSND 204 (313)
T ss_dssp E--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETT
T ss_pred c--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCC
Confidence 9 7788888999999999999998 77 999999999999999 5667778877 999999999999998 9999999
Q ss_pred CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCCCCCCCeEEEE
Q 004924 541 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYAT 620 (723)
Q Consensus 541 g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~ 620 (723)
|.|++||+++++. +.. ..+|. ..|.+++|+|++.+++++.|+.|++||+++++.+..+.. |...|.+++
T Consensus 205 g~i~i~d~~~~~~-----~~~-~~~~~---~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~i~~~~ 273 (313)
T 3odt_A 205 GLIKLVDMHTGDV-----LRT-YEGHE---SFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITL--PAISIWSVD 273 (313)
T ss_dssp SEEEEEETTTCCE-----EEE-EECCS---SCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEEC--SSSCEEEEE
T ss_pred CeEEEEECCchhh-----hhh-hhcCC---ceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEec--cCceEEEEE
Confidence 9999999998643 332 23455 789999999999644447999999999999999888864 578999999
Q ss_pred EeeCCcEEEEEeCCCcEEEEECCCCcEEEEee
Q 004924 621 YSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 652 (723)
Q Consensus 621 ~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~ 652 (723)
|+|+++ +++++.||.|++|++.+++......
T Consensus 274 ~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 274 CMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp ECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred EccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence 999998 6678999999999999987665543
No 65
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-32 Score=292.71 Aligned_cols=276 Identities=12% Similarity=0.105 Sum_probs=233.6
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccc
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 412 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~ 412 (723)
++|+|+++++++.||.|++|++.+ +..... +.+ |...|.+++|+|++++|++++.||.|++||+.++..
T Consensus 40 ~s~~~~~l~~~~~dg~i~vwd~~~----~~~~~~-~~~--h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---- 108 (369)
T 3zwl_B 40 YNKEGDLLFSCSKDSSASVWYSLN----GERLGT-LDG--HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC---- 108 (369)
T ss_dssp ECTTSCEEEEEESSSCEEEEETTT----CCEEEE-ECC--CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE----
T ss_pred EcCCCCEEEEEeCCCEEEEEeCCC----chhhhh-hhh--cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE----
Confidence 788999999999999999999874 343333 444 999999999999999999999999999999874322
Q ss_pred cceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-C-----CcEEEEEcCCCc-----------EEEE
Q 004924 413 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G-----GKISIFSLETFQ-----------TLAT 473 (723)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-d-----g~I~vwd~~~~~-----------~~~~ 473 (723)
+... .+...|.+++|+ +.++++++ + |.|.+||+.++. ....
T Consensus 109 -----------------~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~ 168 (369)
T 3zwl_B 109 -----------------VATW---KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHK 168 (369)
T ss_dssp -----------------EEEE---ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEE
T ss_pred -----------------EEEe---ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeee
Confidence 1111 267889999999 88999988 7 999999997653 3344
Q ss_pred EeCCCC--CeEEEEEcCCC-eEEEEECCCcEEEEeCCC-CcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 004924 474 FANPPP--IATYFILLPQD-LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 549 (723)
Q Consensus 474 ~~~~~~--~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~-~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~ 549 (723)
+..|.. .+.+++|+|++ .+++|+.||.|++||+.+ ++.+..+..|...|.+++|+|++.+|++++.|+.|++||++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 169 IITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS 248 (369)
T ss_dssp EECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECC
Confidence 555655 89999999999 999999999999999998 78889999999999999999999999999999999999999
Q ss_pred CCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCC--------------cEEEEECCCCceeEEecCCCCCC
Q 004924 550 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--------------QIDVYEAPTLNHTSQLVPDKMDL 614 (723)
Q Consensus 550 ~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg--------------~I~vwd~~~~~~~~~~~~~~h~~ 614 (723)
++.. +..+. +. ..+.+++|+|++++++++ .++ .+++||..+++.+..+. .|..
T Consensus 249 ~~~~-----~~~~~--~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~ 316 (369)
T 3zwl_B 249 TLQV-----LKKYE--TD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ--GHFG 316 (369)
T ss_dssp TCCE-----EEEEE--CS---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE--CCSS
T ss_pred CCce-----eeeec--CC---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee--cccC
Confidence 8643 23222 22 689999999999999984 666 79999999999988886 4689
Q ss_pred CeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEe
Q 004924 615 PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 651 (723)
Q Consensus 615 ~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~ 651 (723)
.|.+++|+|++++|++++.||.|++|++.++.....+
T Consensus 317 ~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 317 PLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCCC
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEECccccchhHH
Confidence 9999999999999999999999999999987654443
No 66
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=9.7e-33 Score=297.31 Aligned_cols=283 Identities=12% Similarity=0.127 Sum_probs=224.2
Q ss_pred ccCCCC-CEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeC-CCCEEEEEECCCcEEEEeccCCccc
Q 004924 332 TSLPDA-DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQS 409 (723)
Q Consensus 332 ~~spdg-~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fsp-dg~~las~s~dg~i~iWd~~~~~~~ 409 (723)
.++|+| +++++++.||.|++|++.+ ........+. +|...|.+++|+| ++++|++++.|++|++||+.+...
T Consensus 80 ~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~- 153 (383)
T 3ei3_B 80 EWHPTHPTTVAVGSKGGDIILWDYDV---QNKTSFIQGM--GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI- 153 (383)
T ss_dssp EECSSCTTEEEEEEBTSCEEEEETTS---TTCEEEECCC--STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE-
T ss_pred EECCCCCCEEEEEcCCCeEEEEeCCC---cccceeeecC--CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce-
Confidence 377888 8999999999999999985 2222233233 3999999999999 789999999999999999873211
Q ss_pred ccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEE
Q 004924 410 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 486 (723)
Q Consensus 410 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~ 486 (723)
..+. ...+|...|.+++|+ +.++++++ ||.|++||+ +++.+..+.+|...|.+++|
T Consensus 154 ----------~~~~----------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~ 212 (383)
T 3ei3_B 154 ----------QVFA----------KTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEF 212 (383)
T ss_dssp ----------EEEE----------CCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEE
T ss_pred ----------EEEe----------ccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEE
Confidence 1111 111466889999999 88999999 999999999 68889999999999999999
Q ss_pred cCCC--eEEEEECCCcEEEEeCCC----CcEEEEEcCcCCcEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeceee
Q 004924 487 LPQD--LFAFGFDDSSILVHCPCT----KKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFL 559 (723)
Q Consensus 487 ~p~~--~l~sgs~dg~I~iwd~~~----~~~~~~l~~~~~~i~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l 559 (723)
+|++ .+++|+.|+.|++||+++ +..+..+ +|...|.+++|+| ++.++++++.|+.|++||++++........
T Consensus 213 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 291 (383)
T 3ei3_B 213 NPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIII 291 (383)
T ss_dssp CSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEE
T ss_pred CCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccc
Confidence 9999 799999999999999987 6677767 6999999999999 999999999999999999998654322111
Q ss_pred ee-eecCCCC-------CCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEE
Q 004924 560 HS-FQTGLVP-------ETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 631 (723)
Q Consensus 560 ~~-~~~~~~~-------~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sg 631 (723)
.. ....|.. +...+..++|+|++++ .++.|+.|++||+.+++.+..+..+.|...+..++|+|++++|++|
T Consensus 292 ~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~ 370 (383)
T 3ei3_B 292 HPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASG 370 (383)
T ss_dssp CCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEE
T ss_pred ccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEe
Confidence 10 0011110 0023445666666666 2247999999999999999998765567888888999999999999
Q ss_pred eCCCcEEEEECCC
Q 004924 632 CKSGHVKVFDTST 644 (723)
Q Consensus 632 s~dg~I~iwd~~~ 644 (723)
+ ||.|++||+++
T Consensus 371 s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 371 M-GFNILIWNRED 382 (383)
T ss_dssp E-TTEEEEEECC-
T ss_pred c-CCcEEEEecCC
Confidence 7 99999999875
No 67
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.3e-33 Score=300.59 Aligned_cols=286 Identities=17% Similarity=0.188 Sum_probs=230.7
Q ss_pred CCCc--eEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--
Q 004924 373 FGGR--VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 448 (723)
Q Consensus 373 h~~~--V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-- 448 (723)
|... +.+++|++ ..+++++.||.|++|+..++.. ..... ..|...|.+++|+
T Consensus 90 ~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~---------------------~~~~~-~~~~~~v~~v~~s~~ 145 (401)
T 4aez_A 90 IIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSV---------------------SALAE-TDESTYVASVKWSHD 145 (401)
T ss_dssp CCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCE---------------------EEEEE-CCTTCCEEEEEECTT
T ss_pred CcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcE---------------------eEeee-cCCCCCEEEEEECCC
Confidence 5555 44566654 5688999999999999874322 11111 1388999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCC-CCcEEEEEcCcCCcEEEEE
Q 004924 449 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPC-TKKTKAKLKGHQNRITCLA 526 (723)
Q Consensus 449 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~-~~~~~~~l~~~~~~i~~l~ 526 (723)
+++|++|+ ||.|++||+.+++.+..+.+|...|.+++|+++ .+++|+.||.|++||++ .+..+..+.+|...|.+++
T Consensus 146 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 224 (401)
T 4aez_A 146 GSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRH-VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLA 224 (401)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred CCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCC-EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEE
Confidence 88999999 999999999999999999999999999999432 99999999999999998 5677888999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEE-EEE---cCCcEEEEECCCCc
Q 004924 527 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL-LSI---HEGQIDVYEAPTLN 602 (723)
Q Consensus 527 ~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l-~~s---~dg~I~vwd~~~~~ 602 (723)
|+|++.++++|+.|+.|++||++++.. +. ...+|. ..|.+++|+|++..+ +++ .|+.|++||+.+++
T Consensus 225 ~~~~~~~l~s~~~d~~v~iwd~~~~~~-----~~-~~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~ 295 (401)
T 4aez_A 225 WRSDGLQLASGGNDNVVQIWDARSSIP-----KF-TKTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA 295 (401)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTCSSE-----EE-EECCCS---SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC
T ss_pred EcCCCCEEEEEeCCCeEEEccCCCCCc-----cE-EecCCc---ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC
Confidence 999999999999999999999998532 33 223454 789999999987544 444 49999999999999
Q ss_pred eeEEecCCCCCCCeEEEEEeeCCcEEEEE--eCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCE
Q 004924 603 HTSQLVPDKMDLPITYATYSCDGKCIYVS--CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 680 (723)
Q Consensus 603 ~~~~~~~~~h~~~v~~l~~spdg~~l~sg--s~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~ 680 (723)
.+..+. +...|.+++|+|++++++++ +.||.|++||+.+++........ + |...+. +++|+| ++.+
T Consensus 296 ~~~~~~---~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~-----~-h~~~v~--~~~~s~-dg~~ 363 (401)
T 4aez_A 296 RVNTVD---AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP-----A-HDTRVL--YSALSP-DGRI 363 (401)
T ss_dssp EEEEEE---CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEE-----C-CSSCCC--EEEECT-TSSE
T ss_pred EEEEEe---CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEec-----C-CCCCEE--EEEECC-CCCE
Confidence 988885 46789999999999999984 48999999999998766554321 2 244455 999999 8999
Q ss_pred EEEEECCCcEEEEecCCCceeeec
Q 004924 681 IALGLTNGRVHVIEPLESEVEWGK 704 (723)
Q Consensus 681 las~s~Dg~v~iWd~~~~~~~w~~ 704 (723)
|++++.||.|++|++.+++.....
T Consensus 364 l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 364 LSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEECTTSEEEEEECCC-------
T ss_pred EEEEeCCCcEEEEECCCCcccccc
Confidence 999999999999999998866543
No 68
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.8e-33 Score=306.64 Aligned_cols=285 Identities=12% Similarity=0.072 Sum_probs=229.8
Q ss_pred CceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEE
Q 004924 375 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 452 (723)
Q Consensus 375 ~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l 452 (723)
..+++++|+|+|++|++++.||.|++|+..+... .... ..| ..+....|+ +++|
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~-----~~~~------------------~~~-~~~~~~~~~~~~~~l 112 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDG-----SKML------------------KRA-DYTAVDTAKLQMRRF 112 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEET-----TTTS------------------CSC-CEEEEEEECSSSCEE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccce-----eeEE------------------ecC-CceEEEEEecCCCEE
Confidence 3455899999999999999999999999774322 0000 023 333444566 8899
Q ss_pred EEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCC
Q 004924 453 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS 530 (723)
Q Consensus 453 ~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spd 530 (723)
++|+ ||.|++||+.+++....+.+|...|++++|+|++ .|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|+
T Consensus 113 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~ 192 (420)
T 3vl1_A 113 ILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR 192 (420)
T ss_dssp EEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETT
T ss_pred EEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCC
Confidence 9999 9999999999999988888999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCC------------------CCCCeEEEEEccCCCEEEE-EcCC
Q 004924 531 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP------------------ETTIVNHIQFHPDQIHLLS-IHEG 591 (723)
Q Consensus 531 g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~------------------~~~~v~~l~~spdg~~l~~-s~dg 591 (723)
++.+++++.|+.|++||+++++....... ...+.. ....+.+++|+|+++++++ +.||
T Consensus 193 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 269 (420)
T 3vl1_A 193 GRNVLSASLDGTIRLWECGTGTTIHTFNR---KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG 269 (420)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECB---TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS
T ss_pred CCEEEEEcCCCcEEEeECCCCceeEEeec---CCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC
Confidence 99999999999999999998644322111 011110 0034455556889999998 5899
Q ss_pred cEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCc-EEEEEeCCCcEEEEECCCCcE-EEEeecccccCCCCccCccceE
Q 004924 592 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLEL-RCQINLTAYAQPGTISLELYPL 669 (723)
Q Consensus 592 ~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~-~l~sgs~dg~I~iwd~~~~~~-~~~~~~~~~~~~g~~~~~v~~~ 669 (723)
.|++||+++++....+.. .|...|.+++|+|++. +|++|+.||.|++||+.+++. +..+.. |+...+.
T Consensus 270 ~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-------~~~~~v~-- 339 (420)
T 3vl1_A 270 VITVHNVFSKEQTIQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI-------NEGTPIN-- 339 (420)
T ss_dssp CEEEEETTTCCEEEEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE-------STTSCEE--
T ss_pred eEEEEECCCCceeEEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc-------cCCCCce--
Confidence 999999999988877754 5688999999999999 999999999999999998754 555543 2344444
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEecCCC
Q 004924 670 VIAAHPLEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 670 ~v~~sp~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
++.| | ++.+|++++.||+|++|++..+
T Consensus 340 ~~~~-~-~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 340 NVYF-A-AGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp EEEE-E-TTEEEEEETTTEEEEEEEECCT
T ss_pred EEEe-C-CCCEEEEecCCccEEEEeccCC
Confidence 6644 5 5789999999999999999874
No 69
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.4e-34 Score=313.77 Aligned_cols=284 Identities=12% Similarity=0.133 Sum_probs=213.7
Q ss_pred cCC-CCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeC-CCCEEEEEECCCcEEEEeccCCcccc
Q 004924 333 SLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSL 410 (723)
Q Consensus 333 ~sp-dg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fsp-dg~~las~s~dg~i~iWd~~~~~~~~ 410 (723)
|+| ++++||+|+.||+|+|||+... .......+.+ |.+.|++++|+| ++.+|++|+.||+|++||+.+...
T Consensus 127 ~~P~~~~~lasGs~dg~i~lWd~~~~---~~~~~~~~~g--H~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~-- 199 (435)
T 4e54_B 127 WHPTHPSTVAVGSKGGDIMLWNFGIK---DKPTFIKGIG--AGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL-- 199 (435)
T ss_dssp ECSSCTTCEEEEETTSCEEEECSSCC---SCCEEECCCS--SSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE--
T ss_pred EeCCCCCEEEEEeCCCEEEEEECCCC---CceeEEEccC--CCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce--
Confidence 566 5678999999999999999852 2222333444 999999999998 789999999999999999864211
Q ss_pred cccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEc
Q 004924 411 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 487 (723)
Q Consensus 411 g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~ 487 (723)
..+ .....+...+.+++|+ +.+|++|+ ||.|++||+. ++.+..+.+|...|++++|+
T Consensus 200 ---------~~~----------~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~ 259 (435)
T 4e54_B 200 ---------RVF----------ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALN 259 (435)
T ss_dssp ---------EEE----------ECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEEC
T ss_pred ---------eEE----------eccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeec
Confidence 000 0111345567889999 88999999 9999999986 56677888999999999999
Q ss_pred CCC--eEEEEECCCcEEEEeCCCCcEEEE---EcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeee
Q 004924 488 PQD--LFAFGFDDSSILVHCPCTKKTKAK---LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 562 (723)
Q Consensus 488 p~~--~l~sgs~dg~I~iwd~~~~~~~~~---l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~ 562 (723)
|++ .+++|+.|+.|++||+++++.... ..+|...|++++|+|+|.+|++++.||.|++||+.++...........
T Consensus 260 p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 339 (435)
T 4e54_B 260 PCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPH 339 (435)
T ss_dssp TTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCC
T ss_pred CCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccc
Confidence 998 788999999999999988754433 356999999999999999999999999999999998754322111100
Q ss_pred ecCCCCCCCCeEEEEEccCCCEEEEE-------------cCCcEEEEECCCCceeEEecCCCCCCCeEEE-EEeeCCcEE
Q 004924 563 QTGLVPETTIVNHIQFHPDQIHLLSI-------------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYA-TYSCDGKCI 628 (723)
Q Consensus 563 ~~~~~~~~~~v~~l~~spdg~~l~~s-------------~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l-~~spdg~~l 628 (723)
..... ..+....|+|++..++++ .++.|++||..+++.+..+.. +|...|.++ +|+|+|++|
T Consensus 340 ~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~-~~~~~v~s~~~fspdg~~l 415 (435)
T 4e54_B 340 RHFQH---LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD-PESSGISSLNEFNPMGDTL 415 (435)
T ss_dssp CCCSS---SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC-SSCCCCCCEEEECTTSSCE
T ss_pred ccccc---ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC-CCCCcEEEEEEECCCCCEE
Confidence 00000 123345566666555543 235799999999999888754 467788887 699999999
Q ss_pred EEEeCCCcEEEEECCCCcEE
Q 004924 629 YVSCKSGHVKVFDTSTLELR 648 (723)
Q Consensus 629 ~sgs~dg~I~iwd~~~~~~~ 648 (723)
++|+ |+.|+||++++++..
T Consensus 416 asg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 416 ASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp EEEC-SSEEEECCCC-----
T ss_pred EEEc-CCcEEEEECCcCeee
Confidence 9876 889999999988753
No 70
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-34 Score=310.13 Aligned_cols=292 Identities=15% Similarity=0.207 Sum_probs=236.1
Q ss_pred CCCceEEEEEeCCCC-EEEEE----------ECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCC
Q 004924 373 FGGRVVRLIYSHSGD-FLVAL----------TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS 441 (723)
Q Consensus 373 h~~~V~~l~fspdg~-~las~----------s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 441 (723)
+...|.+++|+|+|+ +|++| +.|+.|++|++.+... . ..... ..|...
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~-----~-------------~~~~~---~~~~~~ 69 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADS-----E-------------KPIAS---LQVDSK 69 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGG-----C-------------SCSCC---CCCSSC
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCC-----C-------------cEEEE---EecCCc
Confidence 345788999999997 99999 8899999999875322 0 00000 148899
Q ss_pred eEEEEEe--CCEEEEEe-CCcEEEEEcCC----CcEEEEEeCCCCCeEEEEEcCC-C-eEEEEECCCcEEEEeCCCCc--
Q 004924 442 ISCFALR--GSHLFSAS-GGKISIFSLET----FQTLATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKK-- 510 (723)
Q Consensus 442 V~~v~~s--~~~l~s~s-dg~I~vwd~~~----~~~~~~~~~~~~~v~~l~~~p~-~-~l~sgs~dg~I~iwd~~~~~-- 510 (723)
|.+++|+ +.+|++++ ||.|++||+.+ .+....+.+|...|++++|+|+ + .+++|+.||.|++||+.+++
T Consensus 70 v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 149 (416)
T 2pm9_A 70 FNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTES 149 (416)
T ss_dssp EEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSC
T ss_pred eEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccc
Confidence 9999999 88999998 99999999987 4588888899999999999998 6 99999999999999999876
Q ss_pred ----EEEE---EcCcCCcEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCC
Q 004924 511 ----TKAK---LKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 582 (723)
Q Consensus 511 ----~~~~---l~~~~~~i~~l~~spd-g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg 582 (723)
.... +.+|...|.+++|+|+ +..+++++.|+.|++||+++++............+|. ..|.+++|+|++
T Consensus 150 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~ 226 (416)
T 2pm9_A 150 PSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIK---QQLSVVEWHPKN 226 (416)
T ss_dssp TTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCC---CCEEEEEECSSC
T ss_pred cccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccC---CceEEEEECCCC
Confidence 3322 3678999999999999 7899999999999999999864322211110011113 789999999997
Q ss_pred -CEEEE-EcCC---cEEEEECCCC-ceeEEecCCCCCCCeEEEEEee-CCcEEEEEeCCCcEEEEECCCCcEEEEeeccc
Q 004924 583 -IHLLS-IHEG---QIDVYEAPTL-NHTSQLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTA 655 (723)
Q Consensus 583 -~~l~~-s~dg---~I~vwd~~~~-~~~~~~~~~~h~~~v~~l~~sp-dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~ 655 (723)
.++++ +.|+ .|++||++++ .....+. ..|...|.+++|+| ++++|++++.||.|++||+.+++.+..+..+
T Consensus 227 ~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~- 304 (416)
T 2pm9_A 227 STRVATATGSDNDPSILIWDLRNANTPLQTLN-QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR- 304 (416)
T ss_dssp TTEEEEEECCSSSCCCCEEETTSTTSCSBCCC-SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS-
T ss_pred CCEEEEEECCCCCceEEEEeCCCCCCCcEEee-cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC-
Confidence 57777 4777 9999999986 4555543 14689999999999 9999999999999999999999988888632
Q ss_pred ccCCCCccCccceEEEEEecCCC-CEEEEEECCCcEEEEecCCCce
Q 004924 656 YAQPGTISLELYPLVIAAHPLEP-NRIALGLTNGRVHVIEPLESEV 700 (723)
Q Consensus 656 ~~~~g~~~~~v~~~~v~~sp~d~-~~las~s~Dg~v~iWd~~~~~~ 700 (723)
...+. +++|+| ++ .+|++++.||.|+||++.++..
T Consensus 305 -------~~~v~--~~~~s~-~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 305 -------GNWCF--KTKFAP-EAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp -------SSCCC--CEEECT-TCTTEEEECCSSSEEEEEESCCCCC
T ss_pred -------CCceE--EEEECC-CCCCEEEEEecCCcEEEEEccCCCC
Confidence 44455 999999 66 8999999999999999988654
No 71
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=5.7e-33 Score=300.54 Aligned_cols=324 Identities=14% Similarity=0.146 Sum_probs=243.4
Q ss_pred CCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeC-CCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEec
Q 004924 346 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQP 424 (723)
Q Consensus 346 dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fsp-dg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~ 424 (723)
++.+++|++.. ...... +.+ |.+.|.+++|+| +|++|++|+.||.|++|++.+... .........
T Consensus 22 ~~~~~v~~~~~----~~~~~~-~~~--h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~~~-- 87 (408)
T 4a11_B 22 ESTRRVLGLEL----NKDRDV-ERI--HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSR-----QSYYTCKAV-- 87 (408)
T ss_dssp HHHHHHHTEEE----CTTEEE-CCC--CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSS-----SSCEEECEE--
T ss_pred cCcceeecccc----Ccceee-eec--cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcc-----cceEecccc--
Confidence 45567888773 333333 444 999999999999 999999999999999999886433 111100000
Q ss_pred CCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcC---CC-eEEEEE
Q 004924 425 SSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP---QD-LFAFGF 496 (723)
Q Consensus 425 ~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p---~~-~l~sgs 496 (723)
.........+|...|.+++|+ +.++++++ ||.|++||+.+++....+. +...+.++.|+| ++ .+++|+
T Consensus 88 ---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 163 (408)
T 4a11_B 88 ---CSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGT 163 (408)
T ss_dssp ---EEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEE
T ss_pred ---ccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEc
Confidence 000000112599999999998 56899999 9999999999999888876 667889999988 44 899999
Q ss_pred CCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeece----------eeeeeecC
Q 004924 497 DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSK----------FLHSFQTG 565 (723)
Q Consensus 497 ~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~-~l~s~s~dg~I~vwd~~~~~~~~~~----------~l~~~~~~ 565 (723)
.||.|++||+++++.+..+.+|...|.+++|+|++. .+++++.||.|++||++++...... .......+
T Consensus 164 ~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (408)
T 4a11_B 164 RGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTA 243 (408)
T ss_dssp SSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCS
T ss_pred CCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccccc
Confidence 999999999999999999999999999999999998 5899999999999999875311000 00001134
Q ss_pred CCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCC---CCCeEEEEEeeCCcEEEEEeCCCcEEEEE
Q 004924 566 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM---DLPITYATYSCDGKCIYVSCKSGHVKVFD 641 (723)
Q Consensus 566 ~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h---~~~v~~l~~spdg~~l~sgs~dg~I~iwd 641 (723)
|. ..|.+++|+|++++|++ +.|+.|++||+.+++....+..... ...+........+..+++++.|+.|++||
T Consensus 244 ~~---~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d 320 (408)
T 4a11_B 244 HN---GKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYT 320 (408)
T ss_dssp CS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEE
T ss_pred cc---CceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEE
Confidence 44 78999999999999998 5899999999998876554432111 11222222233456677778899999999
Q ss_pred CCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCcee
Q 004924 642 TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 701 (723)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~ 701 (723)
+.+++.+..+..+ ...+. +++|+| ++.+|++++.||.|++|++.+++..
T Consensus 321 ~~~~~~~~~~~~~--------~~~v~--~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 321 VYSGEQITMLKGH--------YKTVD--CCVFQS-NFQELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp TTTCCEEEEECCC--------SSCEE--EEEEET-TTTEEEEEETTSCEEEEEECC----
T ss_pred CcCCcceeeeccC--------CCeEE--EEEEcC-CCCEEEEECCCCeEEEEeCCCCCcc
Confidence 9999999888632 34444 999999 8999999999999999999988754
No 72
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.2e-32 Score=294.60 Aligned_cols=279 Identities=10% Similarity=0.065 Sum_probs=229.0
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeecccCCCCce-eEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCccc
Q 004924 331 STSLPDADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 409 (723)
Q Consensus 331 ~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~-~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~ 409 (723)
..++|+|+++++++.|+.|++|++.+ +.. ....+.+ |...|.+++|+|+|++|++++.||.|++||+.++..
T Consensus 14 ~~~s~~~~~l~~~~~d~~v~i~~~~~----~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~- 86 (372)
T 1k8k_C 14 HAWNKDRTQIAICPNNHEVHIYEKSG----NKWVQVHELKE--HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW- 86 (372)
T ss_dssp EEECTTSSEEEEECSSSEEEEEEEET----TEEEEEEEEEC--CSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE-
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCC----CcEEeeeeecC--CCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee-
Confidence 34789999999999999999999984 321 1122444 999999999999999999999999999999764321
Q ss_pred ccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcE---EEEE-eCCCCCeE
Q 004924 410 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT---LATF-ANPPPIAT 482 (723)
Q Consensus 410 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~---~~~~-~~~~~~v~ 482 (723)
........|...|.+++|+ ++++++++ ||.|++||+.++.. ...+ ..|...|.
T Consensus 87 --------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~ 146 (372)
T 1k8k_C 87 --------------------KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL 146 (372)
T ss_dssp --------------------EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred --------------------eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCee
Confidence 1111111588999999999 88999999 99999999988763 3333 57889999
Q ss_pred EEEEcCCC-eEEEEECCCcEEEEeC------------------CCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcE
Q 004924 483 YFILLPQD-LFAFGFDDSSILVHCP------------------CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL 543 (723)
Q Consensus 483 ~l~~~p~~-~l~sgs~dg~I~iwd~------------------~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I 543 (723)
+++|+|++ .+++|+.||.|++||+ .+++.+..+.+|...|.+++|+|+++++++++.|+.|
T Consensus 147 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 226 (372)
T 1k8k_C 147 SLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV 226 (372)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEE
T ss_pred EEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEE
Confidence 99999999 9999999999999995 4678899999999999999999999999999999999
Q ss_pred EEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCC--Cce--e---------------
Q 004924 544 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT--LNH--T--------------- 604 (723)
Q Consensus 544 ~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~--~~~--~--------------- 604 (723)
++||+++++. +..+ ..|. ..|.+++|+|++.+++++.|+.|++||+.+ ++. +
T Consensus 227 ~i~d~~~~~~-----~~~~-~~~~---~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (372)
T 1k8k_C 227 CLADADKKMA-----VATL-ASET---LPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLT 297 (372)
T ss_dssp EEEEGGGTTE-----EEEE-ECSS---CCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------C
T ss_pred EEEECCCCce-----eEEE-ccCC---CCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcc
Confidence 9999988643 3323 3444 689999999999999989999999999987 421 0
Q ss_pred ---------------------EEecCCCCCCCeEEEEEe-eCC---cEEEEEeCCCcEEEEECCCCc
Q 004924 605 ---------------------SQLVPDKMDLPITYATYS-CDG---KCIYVSCKSGHVKVFDTSTLE 646 (723)
Q Consensus 605 ---------------------~~~~~~~h~~~v~~l~~s-pdg---~~l~sgs~dg~I~iwd~~~~~ 646 (723)
..+. .+|...|++++|+ ++| .+|++|+.||.|++|++.+++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 298 ARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp HHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred hhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 1111 2678999999976 566 999999999999999998764
No 73
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3e-33 Score=298.01 Aligned_cols=294 Identities=12% Similarity=0.090 Sum_probs=228.6
Q ss_pred CCCC-CCceeeeCCCcccccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCC----CC
Q 004924 313 GDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS----GD 387 (723)
Q Consensus 313 ~h~~-v~s~~~~~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspd----g~ 387 (723)
+|.+ |.++.|.+. .......+++++.++.|++|++........+.....+ .|...|.+++|+|+ |+
T Consensus 16 ~h~~~v~~i~~~p~-------~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~ 86 (366)
T 3k26_A 16 DHNQPLFGVQFNWH-------SKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDA--DADENFYTCAWTYDSNTSHP 86 (366)
T ss_dssp TTCSCEEEEEECTT-------CCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECS--CTTCCEEEEEEEECTTTCCE
T ss_pred CCCCceEEEEEecc-------cCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecccc--CCCCcEEEEEeccCCCCCCC
Confidence 5665 566555543 1112445666677889999999853212222222222 27789999999999 67
Q ss_pred EEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCcEEEE
Q 004924 388 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIF 463 (723)
Q Consensus 388 ~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~I~vw 463 (723)
+|++|+.||.|++||+.++.. +..+. +|...|.+++|+ +.++++++ ||.|++|
T Consensus 87 ~l~~~~~dg~i~v~d~~~~~~---------------------~~~~~--~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iw 143 (366)
T 3k26_A 87 LLAVAGSRGIIRIINPITMQC---------------------IKHYV--GHGNAINELKFHPRDPNLLLSVSKDHALRLW 143 (366)
T ss_dssp EEEEEETTCEEEEECTTTCCE---------------------EEEEE--SCCSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred EEEEecCCCEEEEEEchhceE---------------------eeeec--CCCCcEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 999999999999999774321 11111 699999999998 67999999 9999999
Q ss_pred EcCCCcEEEEE---eCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEE------------------------
Q 004924 464 SLETFQTLATF---ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL------------------------ 515 (723)
Q Consensus 464 d~~~~~~~~~~---~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l------------------------ 515 (723)
|+.+++....+ .+|...|.+++|+|++ .+++|+.||.|++||+++++....+
T Consensus 144 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (366)
T 3k26_A 144 NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD 223 (366)
T ss_dssp ETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred EeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCc
Confidence 99999999988 6899999999999999 9999999999999999977544333
Q ss_pred ----cCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee---------ceeeeeeecCCCCCCCCeEEEEEccC-
Q 004924 516 ----KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC---------SKFLHSFQTGLVPETTIVNHIQFHPD- 581 (723)
Q Consensus 516 ----~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~---------~~~l~~~~~~~~~~~~~v~~l~~spd- 581 (723)
.+|...|.+++|+ ++++++++.|+.|++||+.++.... ...+. ....|. ..|.+++|+|+
T Consensus 224 ~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~v~~~~~s~~~ 297 (366)
T 3k26_A 224 FSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG-RFDYSQ---CDIWYMRFSMDF 297 (366)
T ss_dssp EEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE-EEECSS---CCSSCCCCEECT
T ss_pred cccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheec-cccccC---CcEEEEEEcCCC
Confidence 3499999999999 7799999999999999998754310 11223 233454 68999999999
Q ss_pred -CCEEEEE-cCCcEEEEECCCCcee----EEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCC
Q 004924 582 -QIHLLSI-HEGQIDVYEAPTLNHT----SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 644 (723)
Q Consensus 582 -g~~l~~s-~dg~I~vwd~~~~~~~----~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~ 644 (723)
+++|+++ .||.|++||+.+++.. ..+..+.|...|.+++|+|++++|++|+.||.|++||+.+
T Consensus 298 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 298 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp TSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 9999985 8999999999987643 3565444479999999999999999999999999999853
No 74
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.2e-32 Score=297.45 Aligned_cols=277 Identities=17% Similarity=0.217 Sum_probs=227.7
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeecccCCCCceeE-EecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccc
Q 004924 332 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT-LLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 410 (723)
Q Consensus 332 ~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~-~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~ 410 (723)
.+|++ +.||+|. |++|+|||..+ +.+.. +.+.+ |...|++++|+|+|++||+|+.||+|++||+.++.
T Consensus 112 ~wS~~-n~lAvgl-d~tV~lWd~~t----g~~~~~~~~~~--~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~--- 180 (420)
T 4gga_A 112 DWSSG-NVLAVAL-DNSVYLWSASS----GDILQLLQMEQ--PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK--- 180 (420)
T ss_dssp EECTT-SEEEEEE-TTEEEEEETTT----CCEEEEEECCS--TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---
T ss_pred EECCC-CEEEEEe-CCEEEEEECCC----CCEEEEEEecC--CCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc---
Confidence 37765 4677665 99999999984 55443 33444 88999999999999999999999999999987432
Q ss_pred cccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcCC-CcEEEEEeCCCCCeEEEEEcC
Q 004924 411 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLP 488 (723)
Q Consensus 411 g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~I~vwd~~~-~~~~~~~~~~~~~v~~l~~~p 488 (723)
.+.... +|...+.++++++..+++|+ |+.+++||... ...+..+.+|...+..+.|+|
T Consensus 181 ------------------~~~~~~--~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~ 240 (420)
T 4gga_A 181 ------------------RLRNMT--SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 240 (420)
T ss_dssp ------------------EEEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred ------------------EEEEEe--CCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC
Confidence 222222 69999999999999999999 99999999876 455678889999999999999
Q ss_pred CC-eEEEEECCCcEEEEeCCCCc----EEEEEcCcCCcEEEEEEcCCC-CEEEE--EeCCCcEEEEeCCCCceeeceeee
Q 004924 489 QD-LFAFGFDDSSILVHCPCTKK----TKAKLKGHQNRITCLAYSLSL-NVLVS--SGADAQLCVWDAVGWKKLCSKFLH 560 (723)
Q Consensus 489 ~~-~l~sgs~dg~I~iwd~~~~~----~~~~l~~~~~~i~~l~~spdg-~~l~s--~s~dg~I~vwd~~~~~~~~~~~l~ 560 (723)
++ .+++++.|+.|++|+..+++ .+.....|...|.+++|+|++ ..+++ |+.|++|++||+.++.. +.
T Consensus 241 ~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~-----~~ 315 (420)
T 4gga_A 241 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-----LS 315 (420)
T ss_dssp TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE-----EE
T ss_pred CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc-----ce
Confidence 99 99999999999999998765 346677899999999999966 45554 45799999999999643 33
Q ss_pred eeecCCCCCCCCeEEEEEccCCCEEEE-E--cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcE
Q 004924 561 SFQTGLVPETTIVNHIQFHPDQIHLLS-I--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 637 (723)
Q Consensus 561 ~~~~~~~~~~~~v~~l~~spdg~~l~~-s--~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I 637 (723)
.+. .+ ..+.++.|+|++..+++ + .|+.|+|||+.+++++.++. +|...|++++|+|||++|++|+.||+|
T Consensus 316 ~~~-~~----~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~--gH~~~V~~l~~spdg~~l~S~s~D~tv 388 (420)
T 4gga_A 316 AVD-AH----SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK--GHTSRVLSLTMSPDGATVASAAADETL 388 (420)
T ss_dssp EEE-CS----SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSCEEEEETTTEE
T ss_pred eec-cc----cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEcCCCCEEEEEecCCeE
Confidence 222 23 67999999999999887 3 68999999999999999886 479999999999999999999999999
Q ss_pred EEEECCCCcEEEEe
Q 004924 638 KVFDTSTLELRCQI 651 (723)
Q Consensus 638 ~iwd~~~~~~~~~~ 651 (723)
++||+.........
T Consensus 389 riWdv~~~~~~~~~ 402 (420)
T 4gga_A 389 RLWRCFELDPARRR 402 (420)
T ss_dssp EEECCSCSSCC---
T ss_pred EEEECCCCCccchh
Confidence 99999876554443
No 75
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6.5e-32 Score=295.04 Aligned_cols=283 Identities=14% Similarity=0.144 Sum_probs=232.7
Q ss_pred CceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEE
Q 004924 375 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 452 (723)
Q Consensus 375 ~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l 452 (723)
-.++.++||+++ .||+| .|++|+|||..++.. .......+|...|++++|+ |++|
T Consensus 106 ~y~~~l~wS~~n-~lAvg-ld~tV~lWd~~tg~~---------------------~~~~~~~~~~~~V~sv~fspdg~~l 162 (420)
T 4gga_A 106 YYLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDI---------------------LQLLQMEQPGEYISSVAWIKEGNYL 162 (420)
T ss_dssp TTCBCEEECTTS-EEEEE-ETTEEEEEETTTCCE---------------------EEEEECCSTTCCEEEEEECTTSSEE
T ss_pred ccceeEEECCCC-EEEEE-eCCEEEEEECCCCCE---------------------EEEEEecCCCCcEEEEEECCCCCEE
Confidence 356789999864 56655 589999999774322 2222222688899999999 8999
Q ss_pred EEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCC-cEEEEEcCcCCcEEEEEEcCC
Q 004924 453 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLS 530 (723)
Q Consensus 453 ~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~-~~~~~l~~~~~~i~~l~~spd 530 (723)
++|+ ||+|++||+.+++.+..+.+|...+.++++++. .+++|+.|+.+++||.... ..+..+.+|...+..+.|+|+
T Consensus 163 asgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~-~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~ 241 (420)
T 4gga_A 163 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 241 (420)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT
T ss_pred EEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCC-EEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCC
Confidence 9999 999999999999999999999999998887532 8999999999999998864 566788999999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCC-EEEE-E--cCCcEEEEECCCCceeEE
Q 004924 531 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-I--HEGQIDVYEAPTLNHTSQ 606 (723)
Q Consensus 531 g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~-~l~~-s--~dg~I~vwd~~~~~~~~~ 606 (723)
+..+++++.|+.+++||..+++... ..+. ....|. ..|.+++|+|++. .+++ + .|+.|++||+.++++...
T Consensus 242 g~~l~s~~~D~~v~i~~~~~~~~~~-~~~~-~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~ 316 (420)
T 4gga_A 242 GRHLASGGNDNLVNVWPSAPGEGGW-VPLQ-TFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 316 (420)
T ss_dssp SSEEEEEETTSCEEEEESSCCSSCS-CCSE-EECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE
T ss_pred CCeeeeeeccccceEEeeccccccc-eeee-eecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee
Confidence 9999999999999999998864322 1222 233454 7899999999875 4444 2 689999999999999888
Q ss_pred ecCCCCCCCeEEEEEeeCCcEEEEEe--CCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEE
Q 004924 607 LVPDKMDLPITYATYSCDGKCIYVSC--KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 684 (723)
Q Consensus 607 ~~~~~h~~~v~~l~~spdg~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 684 (723)
+.. ...+.++.|+|+++.+++++ .||.|+|||+.+++++..+.+ | .+.|. +++|+| ++.+||||
T Consensus 317 ~~~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g-------H-~~~V~--~l~~sp-dg~~l~S~ 382 (420)
T 4gga_A 317 VDA---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-------H-TSRVL--SLTMSP-DGATVASA 382 (420)
T ss_dssp EEC---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC-------C-SSCEE--EEEECT-TSSCEEEE
T ss_pred ecc---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC-------C-CCCEE--EEEEcC-CCCEEEEE
Confidence 753 67899999999999988765 789999999999999998863 3 44455 999999 89999999
Q ss_pred ECCCcEEEEecCCCce
Q 004924 685 LTNGRVHVIEPLESEV 700 (723)
Q Consensus 685 s~Dg~v~iWd~~~~~~ 700 (723)
|.||+|+|||+.+..+
T Consensus 383 s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 383 AADETLRLWRCFELDP 398 (420)
T ss_dssp ETTTEEEEECCSCSSC
T ss_pred ecCCeEEEEECCCCCc
Confidence 9999999999977543
No 76
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=327.86 Aligned_cols=177 Identities=12% Similarity=0.106 Sum_probs=150.5
Q ss_pred CCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcc----------------ccccccee----eeeEEEecCCCeeee
Q 004924 372 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ----------------SLEEENVN----MESQLYQPSSKLVMT 431 (723)
Q Consensus 372 ~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~----------------~~g~~~~~----~~~~~~~~~~~~~~~ 431 (723)
+|.+.|++++|+|+|++||+|+.||+|+||+..+... + |..... -.+++||..++.++.
T Consensus 15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~ 93 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLT 93 (902)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEE
T ss_pred CCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEE
Confidence 3999999999999999999999999999999875443 1 221211 146899999988877
Q ss_pred eccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEE-----------EEEeCCCCCeEEEEEcCCC--eEEEE
Q 004924 432 NDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTL-----------ATFANPPPIATYFILLPQD--LFAFG 495 (723)
Q Consensus 432 ~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~-----------~~~~~~~~~v~~l~~~p~~--~l~sg 495 (723)
.+. |...|++++|+ ++++++|+ ||+|++||+.+++.. ..+.+|...|++++|+|++ .+++|
T Consensus 94 ~~~---~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g 170 (902)
T 2oaj_A 94 TVF---VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLIS 170 (902)
T ss_dssp EEE---CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEE
T ss_pred EEc---CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEE
Confidence 654 67899999999 89999999 999999999988764 2235788999999999975 89999
Q ss_pred ECCCcEEEEeCCCCcEEEEEcCc------------------CCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 004924 496 FDDSSILVHCPCTKKTKAKLKGH------------------QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 553 (723)
Q Consensus 496 s~dg~I~iwd~~~~~~~~~l~~~------------------~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~ 553 (723)
+.||.| +||+++++++..+.+| ...|.+++|+|+|.+|++++.||+|++||+++++.
T Consensus 171 ~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 171 YEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp CSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred eCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence 999999 9999999999888766 47799999999999999999999999999977543
No 77
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-32 Score=302.51 Aligned_cols=309 Identities=13% Similarity=0.097 Sum_probs=235.5
Q ss_pred CCCcceeec-cCCCC-CCceeeeCCCcccccccCC-CCCEEEEEeCCCeEEEEeecccCCCC--c-eeEEecCCCCCCCc
Q 004924 303 QEGRPLDAS-SGDDS-NDSSCFNDNNQSRESTSLP-DADSAVCAKSLEKSVNLKLQLINEPS--E-CRTLLLPDNSFGGR 376 (723)
Q Consensus 303 ~~~~~~~~~-~~h~~-v~s~~~~~~~~~~~~~~sp-dg~~la~~s~dg~v~iw~~~~~~~~~--~-~~~~~l~~~~h~~~ 376 (723)
..+..+..+ .+|.+ |.++. ++| +|+++++++.||+|++|++....... . ...+ +|...
T Consensus 50 ~~g~~~~~~~~~h~~~V~~~~-----------~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-----~h~~~ 113 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITSSA-----------VSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-----DCSST 113 (437)
T ss_dssp CCCCEEEEECTTTTSCEEEEE-----------EECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-----ECSSC
T ss_pred ccceEEeeeccCCCCceEEEE-----------ECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-----cCCCC
Confidence 445666666 66655 55543 677 89999999999999999987521111 1 1122 28999
Q ss_pred eEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCC--CCCCCeEEEEEe----CC
Q 004924 377 VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA--DPKDSISCFALR----GS 450 (723)
Q Consensus 377 V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~v~~s----~~ 450 (723)
|.+++|+|++++|++|+.||+|++||+.... .+....... +..+...... ++...+.++.+. +.
T Consensus 114 v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (437)
T 3gre_A 114 VTQITMIPNFDAFAVSSKDGQIIVLKVNHYQ--QESEVKFLN--------CECIRKINLKNFGKNEYAVRMRAFVNEEKS 183 (437)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEEEEEE--ETTEEEEEE--------EEEEEEEEGGGGSSCCCEEEEEEEECSSCE
T ss_pred EEEEEEeCCCCEEEEEeCCCEEEEEEecccc--CCceeeccc--------cceeEEEEccCcccccCceEEEEEEcCCCC
Confidence 9999999999999999999999999985210 111111110 0011111100 167788888854 77
Q ss_pred EEEEEe-CCcEEEEEcCCCcEEEEEeC--CCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEc-CcCCcEEEE
Q 004924 451 HLFSAS-GGKISIFSLETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCL 525 (723)
Q Consensus 451 ~l~s~s-dg~I~vwd~~~~~~~~~~~~--~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~-~~~~~i~~l 525 (723)
++++++ ||.|++||+.+++.+..+.+ |...|++++|+|++ .+++|+.||.|++||+++++++..+. .|...|.++
T Consensus 184 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 263 (437)
T 3gre_A 184 LLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHV 263 (437)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEE
T ss_pred EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEE
Confidence 899999 99999999999999999987 88999999999999 99999999999999999999999886 788899999
Q ss_pred EEcC----CCCEEEEEeCCCcEEEEeCCCCceeeceeeee-------e-----------ecC--CCCCCCCeEEEEEccC
Q 004924 526 AYSL----SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-------F-----------QTG--LVPETTIVNHIQFHPD 581 (723)
Q Consensus 526 ~~sp----dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~-------~-----------~~~--~~~~~~~v~~l~~spd 581 (723)
+|+| ++.++++++.||.|++||+++++......-.. + ..+ |. ..|.+++|+ +
T Consensus 264 ~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~v~~l~~~-~ 339 (437)
T 3gre_A 264 EVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSL---NALSTISVS-N 339 (437)
T ss_dssp EECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSG---GGGCCEEEE-T
T ss_pred EeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccC---CceEEEEEC-C
Confidence 6654 67899999999999999999875432211000 0 011 33 679999999 7
Q ss_pred CCEEEEE-cCCcEEEEECCCCceeEEecCC-----------------------------------CCCCCeEEEEEeeC-
Q 004924 582 QIHLLSI-HEGQIDVYEAPTLNHTSQLVPD-----------------------------------KMDLPITYATYSCD- 624 (723)
Q Consensus 582 g~~l~~s-~dg~I~vwd~~~~~~~~~~~~~-----------------------------------~h~~~v~~l~~spd- 624 (723)
+.+|+++ .|+.|++||+.+++....+..+ .|...|++++|+++
T Consensus 340 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~ 419 (437)
T 3gre_A 340 DKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVD 419 (437)
T ss_dssp TEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESS
T ss_pred ceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccC
Confidence 7888885 8999999999998877766542 17889999999998
Q ss_pred -CcEEEEEeCCCcEEEEE
Q 004924 625 -GKCIYVSCKSGHVKVFD 641 (723)
Q Consensus 625 -g~~l~sgs~dg~I~iwd 641 (723)
+.+|++|+.||.|+||+
T Consensus 420 ~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 420 ETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp SSEEEEEEETTSCEEEEC
T ss_pred CceEEEEEcCCceEEEeC
Confidence 88999999999999995
No 78
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.7e-31 Score=295.28 Aligned_cols=281 Identities=13% Similarity=0.166 Sum_probs=235.7
Q ss_pred cCCCCCCCce-EEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEE
Q 004924 368 LPDNSFGGRV-VRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 446 (723)
Q Consensus 368 l~~~~h~~~V-~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 446 (723)
+.+ |...| .++.| ++++|++|+.||+|++||+.++. .+..+. +|...|.+++
T Consensus 117 l~~--h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~---------------------~~~~~~--~h~~~V~~l~ 169 (464)
T 3v7d_B 117 LRG--HMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK---------------------FLLQLS--GHDGGVWALK 169 (464)
T ss_dssp EEC--CSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE---------------------EEEEEC--CCSSCEEEEE
T ss_pred EcC--CCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc---------------------EEEEEe--CCCcCEEEEE
Confidence 444 87775 55555 56799999999999999976432 222222 6999999999
Q ss_pred Ee-CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEc--CCC-eEEEEECCCcEEEEeCCCCc-----------
Q 004924 447 LR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL--PQD-LFAFGFDDSSILVHCPCTKK----------- 510 (723)
Q Consensus 447 ~s-~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~--p~~-~l~sgs~dg~I~iwd~~~~~----------- 510 (723)
|+ +.++++|+ ||+|++||+.+++.+..+.+|...|.+++|+ +++ .+++|+.||.|++||+.++.
T Consensus 170 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~ 249 (464)
T 3v7d_B 170 YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249 (464)
T ss_dssp ECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCS
T ss_pred EcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCc
Confidence 99 66999999 9999999999999999999999999999998 567 99999999999999998765
Q ss_pred ------------EEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEE
Q 004924 511 ------------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 578 (723)
Q Consensus 511 ------------~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~ 578 (723)
.+..+.+|...|.++ +++++++++++.||.|++||+.+++ .+. ...+|. ..|.+++|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~-----~~~-~~~~~~---~~v~~~~~ 318 (464)
T 3v7d_B 250 PLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMK-----CLY-ILSGHT---DRIYSTIY 318 (464)
T ss_dssp SEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTE-----EEE-EECCCS---SCEEEEEE
T ss_pred ceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCc-----EEE-EecCCC---CCEEEEEE
Confidence 255678899999887 5678999999999999999999853 333 234555 78999999
Q ss_pred ccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeeccccc
Q 004924 579 HPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA 657 (723)
Q Consensus 579 spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~ 657 (723)
+|++.++++ +.|+.|++||+++++++..+. .|...|.+++|+ +.+|++|+.||.|++||+.++.......
T Consensus 319 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~----- 389 (464)
T 3v7d_B 319 DHERKRCISASMDTTIRIWDLENGELMYTLQ--GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH----- 389 (464)
T ss_dssp ETTTTEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-----
T ss_pred cCCCCEEEEEeCCCcEEEEECCCCcEEEEEe--CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-----
Confidence 999999998 589999999999999998886 468999999997 6899999999999999999987665543
Q ss_pred CCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCceeee
Q 004924 658 QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG 703 (723)
Q Consensus 658 ~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~w~ 703 (723)
+...+. .++|+| ++.++++++ ||.|++||+.+++....
T Consensus 390 ----~~~~~~--~~~~~~-~~~~l~~~~-dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 390 ----HTNLSA--ITTFYV-SDNILVSGS-ENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp ----CTTCCC--EEEEEE-CSSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred ----CCCCcc--EEEEEe-CCCEEEEec-CCeEEEEECCCCcEEeh
Confidence 233344 788999 889999998 89999999999987654
No 79
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.6e-32 Score=283.59 Aligned_cols=246 Identities=13% Similarity=0.172 Sum_probs=201.8
Q ss_pred CCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---
Q 004924 372 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 448 (723)
Q Consensus 372 ~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--- 448 (723)
+|.+.|++++|+|+|++||+|+.|++|+||++..... .++..+. +|..+|.+++|+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-------------------~~~~~l~--gH~~~V~~v~~s~~~ 65 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-------------------KLIDTLT--GHEGPVWRVDWAHPK 65 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-------------------CCCEEEC--CCSSCEEEEEECCGG
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-------------------EEEEEEc--cccCCeEEEEecCCC
Confidence 3999999999999999999999999999999763210 1111111 799999999996
Q ss_pred -CCEEEEEe-CCcEEEEEcCCCc--EEEEEeCCCCCeEEEEEcCC--C-eEEEEECCCcEEEEeCCCCc--EEEEEcCcC
Q 004924 449 -GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQ 519 (723)
Q Consensus 449 -~~~l~s~s-dg~I~vwd~~~~~--~~~~~~~~~~~v~~l~~~p~--~-~l~sgs~dg~I~iwd~~~~~--~~~~l~~~~ 519 (723)
+++|++|+ |++|++||+.+++ .+..+.+|...|.+++|+|+ + .|++|+.|+.|++||++++. ....+.+|.
T Consensus 66 ~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~ 145 (297)
T 2pm7_B 66 FGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHA 145 (297)
T ss_dssp GCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCS
T ss_pred cCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeeccc
Confidence 67999999 9999999998874 56677889999999999998 7 99999999999999998763 245678899
Q ss_pred CcEEEEEEcCC-------------CCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCC---C
Q 004924 520 NRITCLAYSLS-------------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ---I 583 (723)
Q Consensus 520 ~~i~~l~~spd-------------g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg---~ 583 (723)
..|.+++|+|+ +++|++|+.|++|++||++++.... .... ...+|. ..|.+++|+|++ .
T Consensus 146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~-~~~~-~l~~H~---~~V~~v~~sp~~~~~~ 220 (297)
T 2pm7_B 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-VLES-TLEGHS---DWVRDVAWSPTVLLRS 220 (297)
T ss_dssp SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEE-EEEE-EECCCS---SCEEEEEECCCCSSSE
T ss_pred CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE-EEEE-EecCCC---CceEEEEECCCCCCce
Confidence 99999999997 5799999999999999998753211 1222 345676 799999999995 7
Q ss_pred EEEE-EcCCcEEEEECCCCc---eeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECC
Q 004924 584 HLLS-IHEGQIDVYEAPTLN---HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 584 ~l~~-s~dg~I~vwd~~~~~---~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~ 643 (723)
+|++ +.|++|++||+++.. ....+....|...|.+++|+|+|++|++++.||.|++|+..
T Consensus 221 ~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 221 YMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 8888 599999999997643 11223223567899999999999999999999999999976
No 80
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.6e-31 Score=279.08 Aligned_cols=279 Identities=14% Similarity=0.176 Sum_probs=227.6
Q ss_pred eEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEE
Q 004924 377 VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS 454 (723)
Q Consensus 377 V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s 454 (723)
.++|+||+++ .||+| .|++|+|||+.+++ ++..+...+|...|.+++|+ ++++++
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~---------------------~~~~~~~~~~~~~V~~v~~~~~~~~l~s 84 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGD---------------------ILQLLQMEQPGEYISSVAWIKEGNYLAV 84 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCC---------------------EEEEEECCSTTCCEEEEEECTTSSEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCC---------------------EEEEEEecCCCCeEEEEEECCCCCEEEE
Confidence 5789999987 56554 59999999876432 22222223688999999999 899999
Q ss_pred Ee-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCC-cEEEEEcCcCCcEEEEEEcCCC
Q 004924 455 AS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSL 531 (723)
Q Consensus 455 ~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~-~~~~~l~~~~~~i~~l~~spdg 531 (723)
|+ ||+|++||+.+++.+..+.+|...+.++.+ ++ .+++|+.++.+++|+..++ ..+..+.+|...+.++.+++++
T Consensus 85 gs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (318)
T 4ggc_A 85 GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 162 (318)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred EECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC
Confidence 99 999999999999999999999988876655 55 8999999999999998765 5567788999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEE-E--E-cCCcEEEEECCCCceeEEe
Q 004924 532 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL-S--I-HEGQIDVYEAPTLNHTSQL 607 (723)
Q Consensus 532 ~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~-~--s-~dg~I~vwd~~~~~~~~~~ 607 (723)
+++++++.|+.|++||+++++...... . ....+. ..|.+++++|++..++ . + .++.|++||..........
T Consensus 163 ~~l~s~~~d~~i~iwd~~~~~~~~~~~-~-~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 163 RHLASGGNDNLVNVWPSAPGEGGWVPL-Q-TFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp SEEEEEETTSCEEEEESSCBTTBSCCS-E-EECCCC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE
T ss_pred CEEEEEecCcceeEEECCCCcccccce-e-eecccC---CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc
Confidence 999999999999999999865332211 1 223333 6899999999875444 2 2 6789999999988876665
Q ss_pred cCCCCCCCeEEEEEeeCCcEEEEEe--CCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEE
Q 004924 608 VPDKMDLPITYATYSCDGKCIYVSC--KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 685 (723)
Q Consensus 608 ~~~~h~~~v~~l~~spdg~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 685 (723)
. +...+..++|+|++..+++++ .||.|++||+.+++++..+.+ | .+.|+ +++|+| ++++|||||
T Consensus 238 ~---~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g-------H-~~~V~--~l~~sp-dg~~l~S~s 303 (318)
T 4ggc_A 238 D---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-------H-TSRVL--SLTMSP-DGATVASAA 303 (318)
T ss_dssp E---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC-------C-SSCEE--EEEECT-TSSCEEEEE
T ss_pred c---ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcC-------C-CCCEE--EEEEcC-CCCEEEEEe
Confidence 3 477899999999999887654 799999999999999998863 3 44455 999999 899999999
Q ss_pred CCCcEEEEecCCCc
Q 004924 686 TNGRVHVIEPLESE 699 (723)
Q Consensus 686 ~Dg~v~iWd~~~~~ 699 (723)
.||+|+|||+.+.+
T Consensus 304 ~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 304 ADETLRLWRCFELD 317 (318)
T ss_dssp TTTEEEEECCSCCC
T ss_pred cCCeEEEEECCCCC
Confidence 99999999997654
No 81
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.9e-32 Score=290.99 Aligned_cols=282 Identities=12% Similarity=0.123 Sum_probs=220.8
Q ss_pred cccCCCCCEEE-EEeC---CCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCC---CCEEEEEECCCcEEEEec
Q 004924 331 STSLPDADSAV-CAKS---LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS---GDFLVALTQTATHKLWKW 403 (723)
Q Consensus 331 ~~~spdg~~la-~~s~---dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspd---g~~las~s~dg~i~iWd~ 403 (723)
..++|++..++ +++. |+.|++|++.+ +.+......+ |...|.+++|+|+ |++|++|+.||.|++||+
T Consensus 24 ~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~----~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 97 (357)
T 3i2n_A 24 CKWVPCSAKFVTMGNFARGTGVIQLYEIQH----GDLKLLREIE--KAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNL 97 (357)
T ss_dssp EEECTTSSEEEEEEC--CCCEEEEEEEECS----SSEEEEEEEE--ESSCEEEEECTTCCTTTCCEEEEETTSCEEEECT
T ss_pred EEEcCCCceEEEecCccCCCcEEEEEeCCC----Ccccceeeec--ccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeC
Confidence 34788886555 5554 89999999984 4443332223 8999999999999 799999999999999998
Q ss_pred cCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEE------e--CCEEEEEe-CCcEEEEEcCCCc-EEEE
Q 004924 404 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL------R--GSHLFSAS-GGKISIFSLETFQ-TLAT 473 (723)
Q Consensus 404 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~------s--~~~l~s~s-dg~I~vwd~~~~~-~~~~ 473 (723)
.+... .... +. +|...|.+++| + +++|++++ ||.|++||+.+++ ....
T Consensus 98 ~~~~~----~~~~----------------~~--~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 155 (357)
T 3i2n_A 98 EAPEM----PVYS----------------VK--GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVAN 155 (357)
T ss_dssp TSCSS----CSEE----------------EC--CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEE
T ss_pred CCCCc----cEEE----------------EE--ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCccee
Confidence 75321 1111 11 69999999965 4 77999999 9999999999887 6777
Q ss_pred EeCCCC----CeEEEE----EcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcC---CCCEEEEEeCCC
Q 004924 474 FANPPP----IATYFI----LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL---SLNVLVSSGADA 541 (723)
Q Consensus 474 ~~~~~~----~v~~l~----~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~sp---dg~~l~s~s~dg 541 (723)
+..+.. .+.+++ |+|++ .+++|+.||.|++||+++++.... ..|...|.+++|+| ++..+++++.||
T Consensus 156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 234 (357)
T 3i2n_A 156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEG 234 (357)
T ss_dssp ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCC
Confidence 765544 788888 67899 999999999999999999887544 55889999999999 999999999999
Q ss_pred cEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCC-EEEE-EcCCcEEEEECCCCc-----------------
Q 004924 542 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQIDVYEAPTLN----------------- 602 (723)
Q Consensus 542 ~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~-~l~~-s~dg~I~vwd~~~~~----------------- 602 (723)
.|++||++++......... ...+|. ..|.+++|+|++. ++++ +.||.|++||++++.
T Consensus 235 ~i~i~d~~~~~~~~~~~~~-~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~ 310 (357)
T 3i2n_A 235 KFHVFDMRTQHPTKGFASV-SEKAHK---STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGS 310 (357)
T ss_dssp EEEEEEEEEEETTTEEEEE-EEECCS---SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCE
T ss_pred eEEEEeCcCCCcccceeee-ccCCCc---CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccc
Confidence 9999999875433222222 123555 7999999999998 6777 589999999997543
Q ss_pred --eeEEecCCCCCCCeEEEEEeeCCcEEE-EEeCCCcEEEEECCCCcE
Q 004924 603 --HTSQLVPDKMDLPITYATYSCDGKCIY-VSCKSGHVKVFDTSTLEL 647 (723)
Q Consensus 603 --~~~~~~~~~h~~~v~~l~~spdg~~l~-sgs~dg~I~iwd~~~~~~ 647 (723)
.+..+. .|...|.+++|+|++++|+ +|+.||.|++||+.+.+.
T Consensus 311 ~~~~~~~~--~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 311 VSLLQNVT--LSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEEEEEEE--CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred cceeeccc--cCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 344444 4689999999999999998 899999999999987654
No 82
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.8e-32 Score=293.66 Aligned_cols=295 Identities=13% Similarity=0.146 Sum_probs=235.5
Q ss_pred eeccCCCC-CCceeeeCCCcccccccCCCCCEEEEEeCCCeEEEEeecccCCC--C-ceeEEecCCCCCCCceEEEEEeC
Q 004924 309 DASSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEP--S-ECRTLLLPDNSFGGRVVRLIYSH 384 (723)
Q Consensus 309 ~~~~~h~~-v~s~~~~~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~--~-~~~~~~l~~~~h~~~V~~l~fsp 384 (723)
..+.+|.+ |.++.| +| +++++++.||.|++|++...... . .... +.+ |...|.+++|+|
T Consensus 10 ~~~~~h~~~i~~~~~-----------~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~--h~~~v~~~~~~~ 72 (397)
T 1sq9_A 10 NAGKAHDADIFSVSA-----------CN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYS--HFV--HKSGLHHVDVLQ 72 (397)
T ss_dssp EESSCSSSCEEEEEE-----------CS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEE--EEC--CTTCEEEEEEEE
T ss_pred hhhhhhhcCeEEEEe-----------cC--CeEEEEcCCCEEEEEECCCcccccCCCcceE--Eec--CCCcEEEEEEec
Confidence 44556666 555554 34 57999999999999999852100 0 1222 334 999999999999
Q ss_pred C----C---CEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCC-----CCCeEEEEEe----
Q 004924 385 S----G---DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADP-----KDSISCFALR---- 448 (723)
Q Consensus 385 d----g---~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~V~~v~~s---- 448 (723)
+ | ++|++++.||.|++|++.+... .... ...... .| ...|.+++|+
T Consensus 73 ~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~-----~~~~-----------~~~~~~--~~~~~~~~~~v~~~~~~~~~~ 134 (397)
T 1sq9_A 73 AIERDAFELCLVATTSFSGDLLFYRITREDE-----TKKV-----------IFEKLD--LLDSDMKKHSFWALKWGASND 134 (397)
T ss_dssp EEETTTEEEEEEEEEETTSCEEEEEEEECTT-----TCCE-----------EEEEEC--CSCTTGGGSCEEEEEEECCC-
T ss_pred ccccCCccccEEEEEcCCCCEEEEEccCCcc-----cccc-----------cceeec--ccccccCCCcEEEEEEeeccC
Confidence 9 9 9999999999999999874322 0000 011111 45 5899999997
Q ss_pred --CCE-EEEEe-CCcEEEEEcCC------CcEEE-----EE-------eCCCCCeEEEEEcCCCeEEEEECCCcEEEEeC
Q 004924 449 --GSH-LFSAS-GGKISIFSLET------FQTLA-----TF-------ANPPPIATYFILLPQDLFAFGFDDSSILVHCP 506 (723)
Q Consensus 449 --~~~-l~s~s-dg~I~vwd~~~------~~~~~-----~~-------~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~ 506 (723)
+.+ +++++ ||.|++||+.+ ++.+. .+ ..|...|.+++|+|++.+++|+.||.|++||+
T Consensus 135 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~ 214 (397)
T 1sq9_A 135 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISEL 214 (397)
T ss_dssp ---CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEET
T ss_pred CCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEEC
Confidence 678 99998 99999999998 76666 66 44888999999999888888999999999999
Q ss_pred CCCcEEEEEcC---c---CCcEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceeeceeeeeeecC------------
Q 004924 507 CTKKTKAKLKG---H---QNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTG------------ 565 (723)
Q Consensus 507 ~~~~~~~~l~~---~---~~~i~~l~~spdg~~l~s~s~d---g~I~vwd~~~~~~~~~~~l~~~~~~------------ 565 (723)
++++.+..+.. | ...|.+++|+|++++|++++.| +.|++||+++++. +..+...
T Consensus 215 ~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~~ 289 (397)
T 1sq9_A 215 STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER-----IGSLSVPTHSSQASLGEFA 289 (397)
T ss_dssp TTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE-----EEEECBC--------CCBS
T ss_pred CCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc-----cceeccCcccccccccccc
Confidence 99999999998 9 9999999999999999999999 9999999998643 2322220
Q ss_pred CCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCC----CC---------------CCCeEEEEEeeCC
Q 004924 566 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD----KM---------------DLPITYATYSCDG 625 (723)
Q Consensus 566 ~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~----~h---------------~~~v~~l~~spdg 625 (723)
|. ..|.+++|+|++++|++ +.|+.|++||+++++.+..+... .| ...|.+++|+|++
T Consensus 290 ~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g 366 (397)
T 1sq9_A 290 HS---SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG 366 (397)
T ss_dssp BS---SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred cC---CcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence 54 78999999999999998 58999999999999998888621 24 8899999999998
Q ss_pred ----------cEEEEEeCCCcEEEEECCCCc
Q 004924 626 ----------KCIYVSCKSGHVKVFDTSTLE 646 (723)
Q Consensus 626 ----------~~l~sgs~dg~I~iwd~~~~~ 646 (723)
++|++|+.||.|++|++.+|+
T Consensus 367 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 367 WRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 799999999999999998764
No 83
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.3e-32 Score=320.98 Aligned_cols=283 Identities=16% Similarity=0.262 Sum_probs=243.4
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 450 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 450 (723)
|.+.|.+++|+|+|++||+++.||.|+|||+.++. .+.... +|..+|.+++|+ ++
T Consensus 12 h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~---------------------~~~~~~--~~~~~v~~~~~s~~~~ 68 (814)
T 3mkq_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV---------------------EVRSIQ--VTETPVRAGKFIARKN 68 (814)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---------------------EEEEEE--CCSSCEEEEEEEGGGT
T ss_pred CCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc---------------------eEEEEe--cCCCcEEEEEEeCCCC
Confidence 99999999999999999999999999999976422 111111 699999999999 88
Q ss_pred EEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCC-cEEEEEcCcCCcEEEEEE
Q 004924 451 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAY 527 (723)
Q Consensus 451 ~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~-~~~~~l~~~~~~i~~l~~ 527 (723)
+|++++ ||.|++||+.+++.+..+.+|...|++++|+|++ .+++|+.||.|++||+.++ .....+.+|...|.+++|
T Consensus 69 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~ 148 (814)
T 3mkq_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148 (814)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEE
Confidence 999999 9999999999999999999999999999999999 9999999999999999987 677888999999999999
Q ss_pred cC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEcc--CCCEEEEE-cCCcEEEEECCCCce
Q 004924 528 SL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--DQIHLLSI-HEGQIDVYEAPTLNH 603 (723)
Q Consensus 528 sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~sp--dg~~l~~s-~dg~I~vwd~~~~~~ 603 (723)
+| ++..+++++.||.|++||+.++.. ...+..++. ..+.+++|+| ++.+++++ .||.|++||+.+++.
T Consensus 149 ~p~~~~~l~~~~~dg~v~vwd~~~~~~-----~~~~~~~~~---~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 220 (814)
T 3mkq_A 149 NPKDPSTFASGCLDRTVKVWSLGQSTP-----NFTLTTGQE---RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220 (814)
T ss_dssp ETTEEEEEEEEETTSEEEEEETTCSSC-----SEEEECCCT---TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcc-----eeEEecCCC---CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 99 889999999999999999987532 232334443 6899999999 89999985 899999999999998
Q ss_pred eEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCC--EE
Q 004924 604 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN--RI 681 (723)
Q Consensus 604 ~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~--~l 681 (723)
+..+. .|...|.+++|+|+++++++|+.||.|++||..+++....+..+ ...++ +++|+| ++. ++
T Consensus 221 ~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~--------~~~v~--~~~~~~-~~~~~~~ 287 (814)
T 3mkq_A 221 VATLE--GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG--------LERSW--CIATHP-TGRKNYI 287 (814)
T ss_dssp EEEEE--CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS--------SSSEE--EEEECT-TCGGGEE
T ss_pred EEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC--------CCcEE--EEEEcc-CCCceEE
Confidence 88886 46889999999999999999999999999999999988887632 33444 999999 665 35
Q ss_pred EEEECCCcEEEEecCCCce
Q 004924 682 ALGLTNGRVHVIEPLESEV 700 (723)
Q Consensus 682 as~s~Dg~v~iWd~~~~~~ 700 (723)
+++ .|+.+.+|++..+..
T Consensus 288 ~~~-~~~~~~~~~~~~~~~ 305 (814)
T 3mkq_A 288 ASG-FDNGFTVLSLGNDEP 305 (814)
T ss_dssp EEE-ETTEEEEEECSCCSC
T ss_pred EEE-eCCCEEEEEcCCCCc
Confidence 554 577799999876543
No 84
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=301.69 Aligned_cols=304 Identities=10% Similarity=0.088 Sum_probs=222.9
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCC------------C
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK------------D 440 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~ 440 (723)
|.+.|++++|+|+|++||+|+.||.|+||++.+...........+ .+...+. +|. .
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~----------~~~~~~~--~h~~~~~~~~~~~~~~ 94 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEY----------NVYSTFQ--SHEPEFDYLKSLEIEE 94 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCE----------EEEEEEE--CCCCEEEGGGTEEECC
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccce----------eEecccc--cccccccccccccccC
Confidence 789999999999999999999999999999885432000000000 0111111 576 8
Q ss_pred CeEEEEEe--C--CEEEEEe-CCcEEEEEcCCCcEE---------------------------------------EE-Ee
Q 004924 441 SISCFALR--G--SHLFSAS-GGKISIFSLETFQTL---------------------------------------AT-FA 475 (723)
Q Consensus 441 ~V~~v~~s--~--~~l~s~s-dg~I~vwd~~~~~~~---------------------------------------~~-~~ 475 (723)
.|.+++|+ + ..+++++ ||+|++||+.++... +. ..
T Consensus 95 ~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
T 3dw8_B 95 KINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN 174 (447)
T ss_dssp CCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred ceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc
Confidence 89999999 4 6899999 999999999765432 12 35
Q ss_pred CCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCC-CcEEEE-------EcCcCCcEEEEEEcCCC-CEEEEEeCCCcEEE
Q 004924 476 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-KKTKAK-------LKGHQNRITCLAYSLSL-NVLVSSGADAQLCV 545 (723)
Q Consensus 476 ~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~-~~~~~~-------l~~~~~~i~~l~~spdg-~~l~s~s~dg~I~v 545 (723)
+|...|++++|+|++ .|++| .|+.|++||+.+ ++.... +.+|...|.+++|+|++ ..+++|+.||.|++
T Consensus 175 ~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 253 (447)
T 3dw8_B 175 AHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRL 253 (447)
T ss_dssp CCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred CCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEE
Confidence 799999999999999 99998 799999999984 444442 45799999999999998 99999999999999
Q ss_pred EeCCCCceeeceeeeeeecCCCC---------CCCCeEEEEEccCCCEEEEEcCCcEEEEECCC-CceeEEecCCCCCC-
Q 004924 546 WDAVGWKKLCSKFLHSFQTGLVP---------ETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT-LNHTSQLVPDKMDL- 614 (723)
Q Consensus 546 wd~~~~~~~~~~~l~~~~~~~~~---------~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~-~~~~~~~~~~~h~~- 614 (723)
||++++..... .+. ...+|.. ....|.+++|+|+|++|+++.++.|++||+++ ++++..+..+....
T Consensus 254 wd~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~ 331 (447)
T 3dw8_B 254 CDMRASALCDR-HSK-LFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRS 331 (447)
T ss_dssp EETTTCSSSCT-TCE-EECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTT
T ss_pred EECcCCccccc-eee-EeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccc
Confidence 99998643110 122 2233320 00289999999999999996559999999997 88777776431100
Q ss_pred ------------CeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeeccccc-------------CCC---------
Q 004924 615 ------------PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA-------------QPG--------- 660 (723)
Q Consensus 615 ------------~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~-------------~~g--------- 660 (723)
.+..++|+|++++|++|+.||.|++||+.+++.+. +..+... ..+
T Consensus 332 ~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (447)
T 3dw8_B 332 KLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISV 410 (447)
T ss_dssp THHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEG
T ss_pred cccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccc
Confidence 13459999999999999999999999999998763 2211100 000
Q ss_pred ---CccCccceEEEEEecCCCCEEEEEECCCcEEEEecC
Q 004924 661 ---TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 661 ---~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~ 696 (723)
..... +++++||| ++++||+++.++ +++|...
T Consensus 411 ~~~~~~~~--i~~~~~~p-~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 411 DSLDFNKK--ILHTAWHP-KENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp GGCCTTSC--CCEEEECS-SSSEEEEECSSC-EEEEECC
T ss_pred cccccCCc--eeEEEECC-CCCEEEEEecce-eeeeccc
Confidence 01122 45899999 899999998775 8888653
No 85
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.7e-31 Score=276.33 Aligned_cols=272 Identities=16% Similarity=0.199 Sum_probs=222.8
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeecccCCCCceeE-EecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccc
Q 004924 332 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRT-LLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 410 (723)
Q Consensus 332 ~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~-~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~ 410 (723)
.+|+++ .||+| .|++|+|||+.+ +++.. +.+.+ |...|.+++|+|+|++|++|+.||+|++|++.++..
T Consensus 32 ~WS~~~-~lAvg-~D~tV~iWd~~t----g~~~~~~~~~~--~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~-- 101 (318)
T 4ggc_A 32 DWSSGN-VLAVA-LDNSVYLWSASS----GDILQLLQMEQ--PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-- 101 (318)
T ss_dssp EECTTS-EEEEE-ETTEEEEEETTT----CCEEEEEECCS--TTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--
T ss_pred EECCCC-EEEEE-eCCEEEEEECCC----CCEEEEEEecC--CCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee--
Confidence 388876 66665 599999999984 45443 33444 899999999999999999999999999999874322
Q ss_pred cccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcCCC-cEEEEEeCCCCCeEEEEEcC
Q 004924 411 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYFILLP 488 (723)
Q Consensus 411 g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~I~vwd~~~~-~~~~~~~~~~~~v~~l~~~p 488 (723)
+.... +|...+.++.+.+..+++++ ++.+++|+..++ ..+..+.+|...+.++.+++
T Consensus 102 -------------------~~~~~--~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 102 -------------------LRNMT--SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp -------------------EEEEE--CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred -------------------EEEec--CccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 22111 68888888887799999999 999999998775 55677889999999999999
Q ss_pred CC-eEEEEECCCcEEEEeCCCCcE----EEEEcCcCCcEEEEEEcCCCCE---EEEEeCCCcEEEEeCCCCceeeceeee
Q 004924 489 QD-LFAFGFDDSSILVHCPCTKKT----KAKLKGHQNRITCLAYSLSLNV---LVSSGADAQLCVWDAVGWKKLCSKFLH 560 (723)
Q Consensus 489 ~~-~l~sgs~dg~I~iwd~~~~~~----~~~l~~~~~~i~~l~~spdg~~---l~s~s~dg~I~vwd~~~~~~~~~~~l~ 560 (723)
++ .+++++.||.|++||+.+++. ......+.+.|.++.++|++.. +++++.+++|++||...+.. ..
T Consensus 161 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~-----~~ 235 (318)
T 4ggc_A 161 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-----LS 235 (318)
T ss_dssp TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE-----EE
T ss_pred CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc-----cc
Confidence 99 999999999999999988653 3555668889999999997653 34567789999999988532 22
Q ss_pred eeecCCCCCCCCeEEEEEccCCCEEEE-E--cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcE
Q 004924 561 SFQTGLVPETTIVNHIQFHPDQIHLLS-I--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 637 (723)
Q Consensus 561 ~~~~~~~~~~~~v~~l~~spdg~~l~~-s--~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I 637 (723)
... +. ..+..+.|+|++..+++ + .|+.|++||+++++++.++. +|...|++++|+|+|++|++|+.||+|
T Consensus 236 -~~~-~~---~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~--gH~~~V~~l~~spdg~~l~S~s~D~~v 308 (318)
T 4ggc_A 236 -AVD-AH---SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK--GHTSRVLSLTMSPDGATVASAAADETL 308 (318)
T ss_dssp -EEE-CS---SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSCEEEEETTTEE
T ss_pred -ccc-ce---eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEcCCCCEEEEEecCCeE
Confidence 112 22 67999999999998886 3 68999999999999999886 479999999999999999999999999
Q ss_pred EEEECCCCc
Q 004924 638 KVFDTSTLE 646 (723)
Q Consensus 638 ~iwd~~~~~ 646 (723)
+|||+....
T Consensus 309 ~iWd~~~~d 317 (318)
T 4ggc_A 309 RLWRCFELD 317 (318)
T ss_dssp EEECCSCCC
T ss_pred EEEECCCCC
Confidence 999987643
No 86
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=5.6e-32 Score=285.87 Aligned_cols=279 Identities=14% Similarity=0.114 Sum_probs=229.1
Q ss_pred CCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--C
Q 004924 372 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 449 (723)
Q Consensus 372 ~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~ 449 (723)
+|.+.|.+++|+|+|++|++++.||.|++|++.+... .. ...... +|...|.+++|+ +
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~-----~~-------------~~~~~~--~~~~~v~~~~~~~~~ 68 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-----NV-------------DLLQSL--RYKHPLLCCNFIDNT 68 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-----EE-------------EEEEEE--ECSSCEEEEEEEESS
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc-----cc-------------cceeee--ecCCceEEEEECCCC
Confidence 4999999999999999999999999999999874321 00 000011 489999999999 8
Q ss_pred C-EEEEEe-CCcEEEEEc-CCCcEEEEEeC--CCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCC---------CcEEEE
Q 004924 450 S-HLFSAS-GGKISIFSL-ETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCT---------KKTKAK 514 (723)
Q Consensus 450 ~-~l~s~s-dg~I~vwd~-~~~~~~~~~~~--~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~---------~~~~~~ 514 (723)
+ ++++|+ ||.|++||+ .+++. ..+.+ |...|.+++|+| + .+++++.|+.|++||+++ ++++..
T Consensus 69 ~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 146 (342)
T 1yfq_A 69 DLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN 146 (342)
T ss_dssp SEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS
T ss_pred CcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE
Confidence 8 899999 999999999 87755 67778 999999999999 8 999999999999999987 666666
Q ss_pred EcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceeeceeeeeeecCCCCCCCCeEEEEEcc-CCCEEEE-EcCC
Q 004924 515 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-IHEG 591 (723)
Q Consensus 515 l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~-~~~~~~~~l~~~~~~~~~~~~~v~~l~~sp-dg~~l~~-s~dg 591 (723)
+. |...|.+++|+|++ +++++.|+.|++||+++ +... .......+. ..+.+++|+| +++++++ +.||
T Consensus 147 ~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~~---~~i~~i~~~~~~~~~l~~~~~dg 216 (342)
T 1yfq_A 147 TK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDN----GTIEESGLK---YQIRDVALLPKEQEGYACSSIDG 216 (342)
T ss_dssp SS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCC----CEEEECSCS---SCEEEEEECSGGGCEEEEEETTS
T ss_pred Ee-eCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccc----ceeeecCCC---CceeEEEECCCCCCEEEEEecCC
Confidence 66 88999999999987 99999999999999987 5321 111233444 6899999999 9999998 5899
Q ss_pred cEEEEECCCC------ceeEEecCCC-------CCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccC
Q 004924 592 QIDVYEAPTL------NHTSQLVPDK-------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ 658 (723)
Q Consensus 592 ~I~vwd~~~~------~~~~~~~~~~-------h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 658 (723)
.|++|+++.. +....+..+. |...|.+++|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus 217 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------ 290 (342)
T 1yfq_A 217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA------ 290 (342)
T ss_dssp EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC------
T ss_pred cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh------
Confidence 9999999876 6666665431 24499999999999999999999999999999999888775
Q ss_pred CCCccCccceEEEEEecCCCCEEEEEECCCc-EEEEe
Q 004924 659 PGTISLELYPLVIAAHPLEPNRIALGLTNGR-VHVIE 694 (723)
Q Consensus 659 ~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~-v~iWd 694 (723)
+||...+. +++ | ++.+|++++.||+ .+.|.
T Consensus 291 -~~h~~~v~--~~~--~-~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 291 -KFNEDSVV--KIA--C-SDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp -CCSSSEEE--EEE--E-CSSEEEEEEECTHHHHCSS
T ss_pred -cccCCCce--Eec--C-CCCeEEEEecCCccccccc
Confidence 33345555 777 8 8999999999998 55444
No 87
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.3e-31 Score=278.24 Aligned_cols=249 Identities=11% Similarity=0.078 Sum_probs=204.5
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCC--CcEEEEEeCCCCCeEEEEEcCC--C-eEEEEECCCcEEEEeCCC
Q 004924 437 DPKDSISCFALR--GSHLFSAS-GGKISIFSLET--FQTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCT 508 (723)
Q Consensus 437 ~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~--~~~~~~~~~~~~~v~~l~~~p~--~-~l~sgs~dg~I~iwd~~~ 508 (723)
+|...|.+++|+ |++|++|+ |++|++||+.+ ++.+.++.+|...|.+++|+|+ + .|++|+.|++|++||+.+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence 799999999999 89999999 99999999974 4678899999999999999864 7 999999999999999988
Q ss_pred Cc--EEEEEcCcCCcEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccC---
Q 004924 509 KK--TKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--- 581 (723)
Q Consensus 509 ~~--~~~~l~~~~~~i~~l~~spd--g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spd--- 581 (723)
++ .+..+.+|...|.+++|+|+ |.+|++++.|++|++||++++.... .. ...+|. ..|.+++|+|+
T Consensus 87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~---~~-~~~~h~---~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS---PI-IIDAHA---IGVNSASWAPATIE 159 (297)
T ss_dssp SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC---CE-EEECCS---SCEEEEEECCCC--
T ss_pred CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee---ee-eeeccc---CccceEeecCCccc
Confidence 74 56778889999999999997 8999999999999999998753211 11 344666 78999999997
Q ss_pred ----------CCEEEE-EcCCcEEEEECCCCc----eeEEecCCCCCCCeEEEEEeeCC---cEEEEEeCCCcEEEEECC
Q 004924 582 ----------QIHLLS-IHEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCDG---KCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 582 ----------g~~l~~-s~dg~I~vwd~~~~~----~~~~~~~~~h~~~v~~l~~spdg---~~l~sgs~dg~I~iwd~~ 643 (723)
+++|++ +.|+.|++||+++++ ....+. +|...|.+++|+|++ .+|++|+.|++|++||+.
T Consensus 160 ~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~--~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp ----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec--CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 468888 589999999998766 444554 579999999999985 899999999999999998
Q ss_pred CCcE--E-EEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCceeeec
Q 004924 644 TLEL--R-CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK 704 (723)
Q Consensus 644 ~~~~--~-~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~w~~ 704 (723)
++.. . ..+.. .+ +...++ +++|+| ++++||+++.||+|+||+.... ..|..
T Consensus 238 ~~~~~~~~~~~~~-----~~-~~~~v~--~~~~s~-~g~~las~~~D~~v~lw~~~~~-g~w~~ 291 (297)
T 2pm7_B 238 NEQGPWKKTLLKE-----EK-FPDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLE-GKWEP 291 (297)
T ss_dssp STTSCCEEEESSS-----SC-CSSCEE--EEEECS-SSCCEEEEETTSCEEEEEECTT-SCEEE
T ss_pred CCCCccceeeeec-----cc-CCCcEE--EEEECC-CCCEEEEEcCCCcEEEEEECCC-CcEEe
Confidence 7531 1 12210 12 233444 999999 8999999999999999998643 35654
No 88
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-32 Score=296.10 Aligned_cols=281 Identities=11% Similarity=0.024 Sum_probs=213.6
Q ss_pred ccccCCCCCEEEEEeCCCeEEEEeecccCCCC-ceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcc
Q 004924 330 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPS-ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 408 (723)
Q Consensus 330 ~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~-~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~ 408 (723)
...++|+|+++++++.|+.|++|++.+ .. .+.. .+.+ |...|.+++|+|+|++|++++.|++|++||+.++..
T Consensus 16 ~~~~s~~g~~l~~~~~d~~i~iw~~~~---~~~~~~~-~~~~--h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 16 EHAFNSQRTEFVTTTATNQVELYEQDG---NGWKHAR-TFSD--HDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp CCEECSSSSEEECCCSSSCBCEEEEET---TEEEECC-CBCC--CSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred EEEECCCCCEEEEecCCCEEEEEEccC---CceEEEE-EEec--CCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 344899999999999999999999984 11 2222 2444 999999999999999999999999999999875320
Q ss_pred cccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCc---EEEEEeC-CCCCe
Q 004924 409 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ---TLATFAN-PPPIA 481 (723)
Q Consensus 409 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~---~~~~~~~-~~~~v 481 (723)
. ..... ..+|...|.+++|+ +++|++++ |+.|++||+.+++ ....+.. |...|
T Consensus 90 ----~--------------~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v 149 (377)
T 3dwl_C 90 ----W--------------KQTLV--LLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTI 149 (377)
T ss_dssp ----C--------------CCEEE--CCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCE
T ss_pred ----e--------------eeeeE--ecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCe
Confidence 0 00011 11699999999999 88999999 9999999999887 4677777 99999
Q ss_pred EEEEEcCCC-eEEEEECCCcEEEEeCC------------------CCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCc
Q 004924 482 TYFILLPQD-LFAFGFDDSSILVHCPC------------------TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ 542 (723)
Q Consensus 482 ~~l~~~p~~-~l~sgs~dg~I~iwd~~------------------~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~ 542 (723)
++++|+|++ .+++|+.|+.|++||+. .++++..+ +|...|.+++|+|++++|++++.||.
T Consensus 150 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~ 228 (377)
T 3dwl_C 150 LSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS 228 (377)
T ss_dssp EEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc
Confidence 999999999 99999999999999985 34566667 89999999999999999999999999
Q ss_pred EEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCce--e----------------
Q 004924 543 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH--T---------------- 604 (723)
Q Consensus 543 I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~--~---------------- 604 (723)
|++||+.++.... ..+. ...+|. ..|.+++|+|++++|+++.++.+.+|+...... .
T Consensus 229 i~iwd~~~~~~~~-~~~~-~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (377)
T 3dwl_C 229 VTIAYPSAPEQPP-RALI-TVKLSQ---LPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTG 303 (377)
T ss_dssp EC-CEECSTTSCE-EECC-CEECSS---SCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSS
T ss_pred EEEEECCCCCCcc-eeeE-eecCCC---CceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEeeeccccccccccccc
Confidence 9999999864311 1133 233455 789999999999999998787777888752210 0
Q ss_pred ------------------EEec--------------CCCCCCCeEEEEEeeCC-c---EEEEEeCCCcEEEEEC
Q 004924 605 ------------------SQLV--------------PDKMDLPITYATYSCDG-K---CIYVSCKSGHVKVFDT 642 (723)
Q Consensus 605 ------------------~~~~--------------~~~h~~~v~~l~~spdg-~---~l~sgs~dg~I~iwd~ 642 (723)
..+. ...|...|+++++.++. . .+++|+.||.|++||+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 304 NTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000 01278899999976543 3 6999999999999985
No 89
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2e-30 Score=285.33 Aligned_cols=280 Identities=19% Similarity=0.213 Sum_probs=233.9
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEE
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL 452 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l 452 (723)
|.+.|.. +++++|++|++|+.||+|++||+.++.. +..+. +|...|.+++|+++++
T Consensus 117 h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~---------------------~~~~~--~h~~~v~~~~~~~~~l 172 (445)
T 2ovr_B 117 HDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKC---------------------LRTLV--GHTGGVWSSQMRDNII 172 (445)
T ss_dssp STTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCE---------------------EEECC--CCSSCEEEEEEETTEE
T ss_pred cCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcE---------------------EEEEc--CCCCCEEEEEecCCEE
Confidence 8877543 3556789999999999999999764322 22122 6999999999998899
Q ss_pred EEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCC
Q 004924 453 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL 531 (723)
Q Consensus 453 ~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg 531 (723)
++|+ ||+|++||+.+++.+..+.+|...|.++.|+++ .+++|+.||.|++||+.+++.+..+.+|...|.++.| ++
T Consensus 173 ~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~ 249 (445)
T 2ovr_B 173 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK-RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG 249 (445)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS
T ss_pred EEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCC-EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC
Confidence 9999 999999999999999999999999999999532 8999999999999999999999999999999999999 78
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCC
Q 004924 532 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD 610 (723)
Q Consensus 532 ~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~ 610 (723)
..+++|+.||.|++||+++++ .+.. ..+|. ..|.+++| ++.++++ +.|+.|++||+++++.+..+.
T Consensus 250 ~~l~~~~~dg~i~iwd~~~~~-----~~~~-~~~~~---~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-- 316 (445)
T 2ovr_B 250 RRVVSGAYDFMVKVWDPETET-----CLHT-LQGHT---NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT-- 316 (445)
T ss_dssp SCEEEEETTSCEEEEEGGGTE-----EEEE-ECCCS---SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC--
T ss_pred CEEEEEcCCCEEEEEECCCCc-----EeEE-ecCCC---CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc--
Confidence 899999999999999998853 3332 33555 78999999 7788888 589999999999999988886
Q ss_pred CCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcE
Q 004924 611 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRV 690 (723)
Q Consensus 611 ~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v 690 (723)
.|...+.++.+ +++++++|+.||.|++||+.+++.+..+..+. + |... +.+++|++ +++++|+.||.|
T Consensus 317 ~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----~-~~~~--v~~~~~~~---~~l~s~~~dg~v 384 (445)
T 2ovr_B 317 GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPN----K-HQSA--VTCLQFNK---NFVITSSDDGTV 384 (445)
T ss_dssp CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTT----S-CSSC--EEEEEECS---SEEEEEETTSEE
T ss_pred CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCC----C-CCCC--EEEEEECC---CEEEEEeCCCeE
Confidence 45778887776 57799999999999999999999888876421 1 2333 44888864 799999999999
Q ss_pred EEEecCCCceeeec
Q 004924 691 HVIEPLESEVEWGK 704 (723)
Q Consensus 691 ~iWd~~~~~~~w~~ 704 (723)
++||+.+++.....
T Consensus 385 ~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 385 KLWDLKTGEFIRNL 398 (445)
T ss_dssp EEEETTTCCEEEEE
T ss_pred EEEECCCCceeeee
Confidence 99999998765433
No 90
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.7e-31 Score=291.43 Aligned_cols=278 Identities=15% Similarity=0.183 Sum_probs=225.2
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEE
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL 452 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l 452 (723)
|...|.+++| +|+++++|+.||+|++||..++.. ...+. +|...|.+++|.++++
T Consensus 132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~---------------------~~~~~--~h~~~v~~l~~~~~~l 186 (435)
T 1p22_A 132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLEC---------------------KRILT--GHTGSVLCLQYDERVI 186 (435)
T ss_dssp SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCE---------------------EEEEC--CCSSCEEEEECCSSEE
T ss_pred CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeE---------------------EEEEc--CCCCcEEEEEECCCEE
Confidence 7788998887 899999999999999999764322 11111 6999999999999999
Q ss_pred EEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEE---EEEcCcCCcEEEEEEc
Q 004924 453 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTK---AKLKGHQNRITCLAYS 528 (723)
Q Consensus 453 ~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~---~~l~~~~~~i~~l~~s 528 (723)
++|+ ||+|++||+.+++.+..+.+|...|.+++|+++ .+++|+.||.|++||+.+++.. ..+.+|...|.++.|
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF- 264 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred EEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCC-EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence 9999 999999999999999999999999999999643 9999999999999999987655 677889999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEe
Q 004924 529 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 607 (723)
Q Consensus 529 pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~ 607 (723)
+++++++|+.||.|++||+++++. +.. ..+|. ..|.++.++ +.++++ +.||.|++||+++++++..+
T Consensus 265 -~~~~l~s~~~dg~i~vwd~~~~~~-----~~~-~~~~~---~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~ 332 (435)
T 1p22_A 265 -DDKYIVSASGDRTIKVWNTSTCEF-----VRT-LNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL 332 (435)
T ss_dssp -ETTEEEEEETTSEEEEEETTTCCE-----EEE-EECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred -CCCEEEEEeCCCeEEEEECCcCcE-----EEE-EcCCC---CcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence 778999999999999999998643 332 23555 789999985 568887 58999999999999998888
Q ss_pred cCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCc---------EEEEeecccccCCCCccCccceEEEEEecCCC
Q 004924 608 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE---------LRCQINLTAYAQPGTISLELYPLVIAAHPLEP 678 (723)
Q Consensus 608 ~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~---------~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 678 (723)
. .|...|.+++| ++.+|++|+.||.|++||+.++. .+..+.. |...+. +++| ++
T Consensus 333 ~--~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--------h~~~v~--~l~~---~~ 395 (435)
T 1p22_A 333 E--GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE--------HSGRVF--RLQF---DE 395 (435)
T ss_dssp C--CCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC--------CSSCCC--CEEE---CS
T ss_pred e--CCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccC--------CCCCeE--EEEe---CC
Confidence 6 46889999998 78999999999999999998765 5666542 244555 8888 45
Q ss_pred CEEEEEECCCcEEEEecCCCceeeecCC
Q 004924 679 NRIALGLTNGRVHVIEPLESEVEWGKLP 706 (723)
Q Consensus 679 ~~las~s~Dg~v~iWd~~~~~~~w~~~~ 706 (723)
.+|++++.||+|++||+.++......++
T Consensus 396 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~ 423 (435)
T 1p22_A 396 FQIVSSSHDDTILIWDFLNDPAAQAEPP 423 (435)
T ss_dssp SCEEECCSSSEEEEEC------------
T ss_pred CEEEEEeCCCEEEEEECCCCCCcccCCC
Confidence 7899999999999999988766554443
No 91
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3e-31 Score=283.96 Aligned_cols=289 Identities=10% Similarity=0.055 Sum_probs=214.4
Q ss_pred cccCCCCCEEEEEeCC-------CeEEEEeecccCCCC-----ceeEEecCCCCCCCceEEEEEeCCCCEEEEEE-----
Q 004924 331 STSLPDADSAVCAKSL-------EKSVNLKLQLINEPS-----ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT----- 393 (723)
Q Consensus 331 ~~~spdg~~la~~s~d-------g~v~iw~~~~~~~~~-----~~~~~~l~~~~h~~~V~~l~fspdg~~las~s----- 393 (723)
..|+|||++||+|+.+ +.|++|++....... ....+.+.+ |.+.|.+++++ ++.+++|+
T Consensus 20 v~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~--~~~~v~s~~~~--~~~~~~g~~~~~~ 95 (365)
T 4h5i_A 20 AKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALED--NDDSPTAIDAS--KGIILVGCNENST 95 (365)
T ss_dssp EEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCT--TSCCCCEEEEE--TTEEEEECCCCHH
T ss_pred EEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccC--CCCceEEEEeC--CCEEEEEECCCcc
Confidence 3489999999999764 359999987532111 112234554 88889888765 45666654
Q ss_pred ------CCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe---CCcEEE
Q 004924 394 ------QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISI 462 (723)
Q Consensus 394 ------~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s---dg~I~v 462 (723)
.|+++++|++..... .. ..+.. ........+...+.+++|+ |+++++++ |++|++
T Consensus 96 ~l~s~~~d~~~r~~~~~~~~~-----~~----~~~~~-----~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~i 161 (365)
T 4h5i_A 96 KITQGKGNKHLRKFKYDKVND-----QL----EFLTS-----VDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRI 161 (365)
T ss_dssp HHHHTSCCCCEEEEEEETTTT-----EE----EEEEE-----ECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEE
T ss_pred EEEEecCCCcEEEEEecCCCc-----eE----EEeee-----eceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEE
Confidence 456777777653221 00 00100 0011111456779999999 78876544 799999
Q ss_pred EEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEE--EcCcCCcEEEEEEcCCCCEEEEEeC
Q 004924 463 FSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK--LKGHQNRITCLAYSLSLNVLVSSGA 539 (723)
Q Consensus 463 wd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~--l~~~~~~i~~l~~spdg~~l~s~s~ 539 (723)
||+.+++++..+. |...|.+++|+|+| ++++++.+ .+.+|+..+++.+.. ..+|...|.+++|+|++..+++++.
T Consensus 162 wd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~ 239 (365)
T 4h5i_A 162 IDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASL 239 (365)
T ss_dssp EETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEE
T ss_pred eECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEec
Confidence 9999999988885 66789999999999 88888754 566777677766543 3568889999999999999999998
Q ss_pred CC----cEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCC
Q 004924 540 DA----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDL 614 (723)
Q Consensus 540 dg----~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~ 614 (723)
|+ .+++||+..+..... ... ...+|. ..|++++|+|||++|++ +.|++|+|||+++++++..+.. +|..
T Consensus 240 d~~~~~~i~~~~~~~~~~~~~-~~~-~~~~~~---~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~-gH~~ 313 (365)
T 4h5i_A 240 KKGKGIVLTKISIKSGNTSVL-RSK-QVTNRF---KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ-AHSF 313 (365)
T ss_dssp SSSCCEEEEEEEEETTEEEEE-EEE-EEESSC---SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETT-SSSS
T ss_pred CCcceeEEeecccccceecce-eee-eecCCC---CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecC-cccC
Confidence 87 588899877532211 112 234555 78999999999999998 5999999999999999888743 5899
Q ss_pred CeEEEEEeeCCcEEEEEeCCCcEEEEECCCC
Q 004924 615 PITYATYSCDGKCIYVSCKSGHVKVFDTSTL 645 (723)
Q Consensus 615 ~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~ 645 (723)
.|++++|||||++|++||.|++|+||++...
T Consensus 314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 314 AITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999999999999999999999653
No 92
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.1e-31 Score=281.51 Aligned_cols=248 Identities=11% Similarity=0.116 Sum_probs=199.8
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCc--EEEEEeCCCCCeEEEEEcCC--C-eEEEEECCCcEEEEeCCC
Q 004924 437 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCT 508 (723)
Q Consensus 437 ~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~--~~~~~~~~~~~v~~l~~~p~--~-~l~sgs~dg~I~iwd~~~ 508 (723)
+|.+.|.+++|+ |++|++|+ |++|++||+.++. .+..+.+|...|.+++|+|+ + .|++|+.|++|++||+++
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN 90 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence 699999999999 89999999 9999999998875 46778899999999999863 7 999999999999999998
Q ss_pred C--cEEEEEcCcCCcEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccC---
Q 004924 509 K--KTKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--- 581 (723)
Q Consensus 509 ~--~~~~~l~~~~~~i~~l~~spd--g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spd--- 581 (723)
+ +....+.+|...|.+++|+|+ +.+|++|+.|++|++||++++.. ........+|. ..|.+++|+|+
T Consensus 91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~---~~~~~~~~~h~---~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ---WEVKKINNAHT---IGCNAVSWAPAVVP 164 (316)
T ss_dssp SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC---EEECCBTTSSS---SCBCCCEECCCCCC
T ss_pred CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC---cceeeeecccc---CCcceEEEccccCC
Confidence 7 466788899999999999998 78999999999999999987421 11122345565 78999999997
Q ss_pred --------------CCEEEE-EcCCcEEEEECCCC---ceeEEecCCCCCCCeEEEEEeeCC----cEEEEEeCCCcEEE
Q 004924 582 --------------QIHLLS-IHEGQIDVYEAPTL---NHTSQLVPDKMDLPITYATYSCDG----KCIYVSCKSGHVKV 639 (723)
Q Consensus 582 --------------g~~l~~-s~dg~I~vwd~~~~---~~~~~~~~~~h~~~v~~l~~spdg----~~l~sgs~dg~I~i 639 (723)
+++|++ +.|+.|++||++.+ ++...+. .|...|.+++|+|++ .+|++|+.||+|++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~--~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE--AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB--CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc--cCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence 367887 58999999999755 3444443 578999999999987 89999999999999
Q ss_pred EECCCCc----EEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCceeeec
Q 004924 640 FDTSTLE----LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK 704 (723)
Q Consensus 640 wd~~~~~----~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~w~~ 704 (723)
|++.+.. ....+. + +...++ +++|+| ++++||+++.||+|+||+.... ..|..
T Consensus 243 w~~~~~~~~~~~~~~~~-------~-~~~~v~--~v~~sp-~g~~las~~~D~~v~lw~~~~~-g~~~~ 299 (316)
T 3bg1_A 243 WTCDDASSNTWSPKLLH-------K-FNDVVW--HVSWSI-TANILAVSGGDNKVTLWKESVD-GQWVC 299 (316)
T ss_dssp EECSSTTCCCCBCCEEE-------E-CSSCEE--EEEECT-TTCCEEEEESSSCEEEEEECTT-SCEEE
T ss_pred EEccCccccchhhhhhh-------c-CCCcEE--EEEEcC-CCCEEEEEcCCCeEEEEEECCC-CcEEE
Confidence 9988631 111221 1 234455 999999 8999999999999999998643 24544
No 93
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-30 Score=276.98 Aligned_cols=249 Identities=14% Similarity=0.169 Sum_probs=207.9
Q ss_pred CCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---
Q 004924 372 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 448 (723)
Q Consensus 372 ~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--- 448 (723)
+|.+.|.+++|+|+|++|++|+.||.|++|++.... +.....+. +|...|.+++|+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-------------------~~~~~~~~--~h~~~v~~~~~~~~~ 67 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-------------------HKLIDTLT--GHEGPVWRVDWAHPK 67 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-------------------EEEEEEEC--CCSSCEEEEEECCGG
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-------------------ceeeeEec--CCCCcEEEEEeCCCC
Confidence 399999999999999999999999999999976211 11111111 699999999997
Q ss_pred -CCEEEEEe-CCcEEEEEcCCCc--EEEEEeCCCCCeEEEEEcCC--C-eEEEEECCCcEEEEeCCCCc--EEEEEcCcC
Q 004924 449 -GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQ 519 (723)
Q Consensus 449 -~~~l~s~s-dg~I~vwd~~~~~--~~~~~~~~~~~v~~l~~~p~--~-~l~sgs~dg~I~iwd~~~~~--~~~~l~~~~ 519 (723)
+++|++++ ||.|++||+.+++ ....+..|...|.+++|+|+ + .+++++.||.|++||+.++. ....+.+|.
T Consensus 68 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 147 (379)
T 3jrp_A 68 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA 147 (379)
T ss_dssp GCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCT
T ss_pred CCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCC
Confidence 68999999 9999999999987 67778889999999999999 8 99999999999999998873 445677899
Q ss_pred CcEEEEEEcC-------------CCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccC---CC
Q 004924 520 NRITCLAYSL-------------SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---QI 583 (723)
Q Consensus 520 ~~i~~l~~sp-------------dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spd---g~ 583 (723)
..|.+++|+| ++..+++++.||.|++||++++.... .... ...+|. ..|.+++|+|+ +.
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~-~~~~h~---~~v~~~~~sp~~~~~~ 222 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-VLES-TLEGHS---DWVRDVAWSPTVLLRS 222 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE-EEEE-EECCCS---SCEEEEEECCCCSSSE
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce-eeEE-EEeccc---CcEeEEEECCCCCCCC
Confidence 9999999999 69999999999999999998754221 1222 344565 78999999999 88
Q ss_pred EEEE-EcCCcEEEEECCCCc---eeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCc
Q 004924 584 HLLS-IHEGQIDVYEAPTLN---HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 646 (723)
Q Consensus 584 ~l~~-s~dg~I~vwd~~~~~---~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~ 646 (723)
+|++ +.||.|++||++++. .........|...|.+++|+|++++|++++.||.|++|++..+.
T Consensus 223 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 223 YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred eEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 8888 589999999998864 22333333478899999999999999999999999999998544
No 94
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-31 Score=286.54 Aligned_cols=293 Identities=11% Similarity=0.057 Sum_probs=221.8
Q ss_pred ccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCccc
Q 004924 330 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 409 (723)
Q Consensus 330 ~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~ 409 (723)
...++|||+++|+++.|++|+ +... ..+ +. +|...|++++|+|+| .++.+.+|+.+....
T Consensus 20 sv~~SpDG~~iASas~D~TV~--d~~~----~~~----l~--gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~- 79 (588)
T 2j04_A 20 NLTWARDGTLYLTTFPDISIG--QPKY----AKD----IN--CNSKNLFHVKEFPLE-------FENKLDFELAQQNGL- 79 (588)
T ss_dssp CEEECTTSCEEEECSSSEEEE--EECC----CSC----CS--SBGGGTEEEEEECCC-------CCCTTTTSCCCSSCS-
T ss_pred EEEECCCCCEEEEEcCCceee--cccc----cce----ec--CCCccEEEEEECCCC-------CcceEEEEeCCCceE-
Confidence 344999999999999999999 6432 221 23 499999999999999 456655554331110
Q ss_pred ccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCC-----Ce
Q 004924 410 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPP-----IA 481 (723)
Q Consensus 410 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~-----~v 481 (723)
. .. .|...|.+++|+ |.+||+++ ||.|++||..+ ++..+. |.. .+
T Consensus 80 --------------------~---~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv 132 (588)
T 2j04_A 80 --------------------L---NS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTY 132 (588)
T ss_dssp --------------------S---TT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCE
T ss_pred --------------------e---ec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccE
Confidence 0 00 368899999999 99999999 99999999644 666666 655 59
Q ss_pred EEEEEcCCC-eEEEEECCCcEEEEeCCCCc-------EEEEE----cCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 004924 482 TYFILLPQD-LFAFGFDDSSILVHCPCTKK-------TKAKL----KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 549 (723)
Q Consensus 482 ~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~-------~~~~l----~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~ 549 (723)
.+++|+||| .||+|+.||+|++||+.++. .+..+ .+|...|.+++|+||| +++++.|++|++||+.
T Consensus 133 ~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~ 210 (588)
T 2j04_A 133 HCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVS 210 (588)
T ss_dssp EEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCC
T ss_pred EEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECC
Confidence 999999999 99999999999999999885 36776 6788899999999999 8889999999999998
Q ss_pred CCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCCCCCCCeEEEEE--eeCCcE
Q 004924 550 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY--SCDGKC 627 (723)
Q Consensus 550 ~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~--spdg~~ 627 (723)
++... ...+++..+|. ..|.+++|+ |..++++.+++|++||+.+++...... +|...|..++| +||+..
T Consensus 211 ~~~~~--~~~~tL~~~h~---~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~--gh~~~V~~va~~~s~d~~~ 281 (588)
T 2j04_A 211 ASSHQ--PVSRMIQNASR---RKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKT--GSLENFHIIPLNHEKESTI 281 (588)
T ss_dssp SSSSC--CCEEEEECCCS---SCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEEC--SCCSCCCEEEETTCSSCEE
T ss_pred CCccc--cceeeeccccc---CcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEc--CCCceEEEEEeeeCCCCCE
Confidence 85421 11222334555 689999999 689998778999999998777633322 47999999999 999999
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeeccc------------ccCCCC----ccCccceEEEEEecCCCCEEEEEEC
Q 004924 628 IYVSCKSGHVKVFDTSTLELRCQINLTA------------YAQPGT----ISLELYPLVIAAHPLEPNRIALGLT 686 (723)
Q Consensus 628 l~sgs~dg~I~iwd~~~~~~~~~~~~~~------------~~~~g~----~~~~v~~~~v~~sp~d~~~las~s~ 686 (723)
++++++||+ ++|....- . +.+.. +...|. -.+...+.+++|+| ||+.+|+++.
T Consensus 282 La~a~edG~-klw~~d~~---~-~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SP-dG~~lA~~~~ 350 (588)
T 2j04_A 282 LLMSNKTSY-KVLLEDEL---H-VTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSP-DGYSIAIVYD 350 (588)
T ss_dssp EEECSSCEE-EEEESSSE---E-EECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECT-TSSEEEEEEE
T ss_pred EEEEcCCCC-EEEeeccE---E-ECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECC-CCCEEEEEEe
Confidence 999999999 99998621 1 11100 000000 01122255999999 9999999873
No 95
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.5e-31 Score=280.34 Aligned_cols=243 Identities=15% Similarity=0.173 Sum_probs=196.4
Q ss_pred CCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---
Q 004924 372 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 448 (723)
Q Consensus 372 ~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--- 448 (723)
+|.+.|++++|+|+|++||+|+.|++|+|||+.++.. ..+..+. +|...|.+++|+
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-------------------~~~~~l~--gH~~~V~~v~~~~~~ 69 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-------------------ILIADLR--GHEGPVWQVAWAHPM 69 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE-------------------EEEEEEE--CCSSCEEEEEECCGG
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc-------------------EEEEEEc--CCCccEEEEEeCCCC
Confidence 3999999999999999999999999999999764211 0111111 799999999996
Q ss_pred -CCEEEEEe-CCcEEEEEcCCC--cEEEEEeCCCCCeEEEEEcCC--C-eEEEEECCCcEEEEeCCCCcE---EEEEcCc
Q 004924 449 -GSHLFSAS-GGKISIFSLETF--QTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKKT---KAKLKGH 518 (723)
Q Consensus 449 -~~~l~s~s-dg~I~vwd~~~~--~~~~~~~~~~~~v~~l~~~p~--~-~l~sgs~dg~I~iwd~~~~~~---~~~l~~~ 518 (723)
+++|++|+ |++|++||+.++ +....+.+|...|.+++|+|+ + .|++|+.|+.|++||++++.. ...+.+|
T Consensus 70 ~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h 149 (316)
T 3bg1_A 70 YGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAH 149 (316)
T ss_dssp GSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred CCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence 68999999 999999999887 456778899999999999998 7 999999999999999987632 3445679
Q ss_pred CCcEEEEEEcCC-----------------CCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccC
Q 004924 519 QNRITCLAYSLS-----------------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 581 (723)
Q Consensus 519 ~~~i~~l~~spd-----------------g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spd 581 (723)
...|.+++|+|+ +++|++|+.|++|++||++.+.. ...+. ...+|. ..|.+++|+|+
T Consensus 150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~--~~~~~-~l~~h~---~~V~~v~~sp~ 223 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ--WKEEQ-KLEAHS---DWVRDVAWAPS 223 (316)
T ss_dssp SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC--EEEEE-CCBCCS---SCEEEEECCCC
T ss_pred cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc--cceee-ecccCC---CceEEEEecCC
Confidence 999999999997 46899999999999999975321 11233 334666 78999999998
Q ss_pred C----CEEEE-EcCCcEEEEECCCCc----eeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECC
Q 004924 582 Q----IHLLS-IHEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 582 g----~~l~~-s~dg~I~vwd~~~~~----~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~ 643 (723)
+ .+|++ +.|++|++||+.+.. ....+. .|...|.+++|+|++++|++|+.||.|++|+..
T Consensus 224 ~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 224 IGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH--KFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp SSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE--ECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh--cCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 6 78888 599999999997631 112222 357899999999999999999999999999976
No 96
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=1.2e-30 Score=277.74 Aligned_cols=281 Identities=13% Similarity=0.100 Sum_probs=223.6
Q ss_pred CCCCceEEEEEeCC---CCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe
Q 004924 372 SFGGRVVRLIYSHS---GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR 448 (723)
Q Consensus 372 ~h~~~V~~l~fspd---g~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 448 (723)
+|.+.|++++|+|+ |++|++|+.||.|++|++.+... . +..... +|...|.+++|+
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~----~---------------~~~~~~--~h~~~v~~~~~~ 95 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ----T---------------IPKAQQ--MHTGPVLDVCWS 95 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC----E---------------EEEEEE--ECSSCEEEEEEC
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc----e---------------eEEEec--cccCCEEEEEEC
Confidence 39999999999999 69999999999999999874111 1 001111 599999999999
Q ss_pred --CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEE--cCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcE
Q 004924 449 --GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL--LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 522 (723)
Q Consensus 449 --~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~--~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i 522 (723)
+++|++++ ||.|++||+.+++... +..|...|++++| +|++ .+++|+.||.|++||+++++.+..+..+. .+
T Consensus 96 ~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~ 173 (368)
T 3mmy_A 96 DDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RC 173 (368)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CE
T ss_pred cCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-Cc
Confidence 88999999 9999999999988766 5578999999999 8899 99999999999999999999988888664 56
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCE----EEE-EcCCcEEEEE
Q 004924 523 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH----LLS-IHEGQIDVYE 597 (723)
Q Consensus 523 ~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~----l~~-s~dg~I~vwd 597 (723)
.++.+.+ ..+++++.++.+++||++.... ........+. ..+.++++.+++.. +++ +.|+.|++||
T Consensus 174 ~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~ 244 (368)
T 3mmy_A 174 YCADVIY--PMAVVATAERGLIVYQLENQPS----EFRRIESPLK---HQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY 244 (368)
T ss_dssp EEEEEET--TEEEEEEGGGCEEEEECSSSCE----EEEECCCSCS---SCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred eEEEecC--CeeEEEeCCCcEEEEEeccccc----hhhhcccccc---CCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence 6666664 5788999999999999987532 1221222222 45677777666543 666 6999999999
Q ss_pred CCCC---ceeEEecCCCCCC------------CeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCc
Q 004924 598 APTL---NHTSQLVPDKMDL------------PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI 662 (723)
Q Consensus 598 ~~~~---~~~~~~~~~~h~~------------~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~ 662 (723)
++.. .....+.. |.. .|.+++|+|++++|++|+.||.|++||+.+++++..+..+
T Consensus 245 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------- 314 (368)
T 3mmy_A 245 INPPNPAKDNFTFKC--HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL-------- 314 (368)
T ss_dssp SSCSCHHHHSEEEEC--SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC--------
T ss_pred cCCCCccccceeeee--eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC--------
Confidence 9877 44555543 333 7999999999999999999999999999999988887532
Q ss_pred cCccceEEEEEecCCCCEEEEEECCCcEEEEecCC
Q 004924 663 SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 663 ~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~ 697 (723)
...+. +++|+| ++.+|++++.|+..+.|++-+
T Consensus 315 ~~~v~--~~~~s~-~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 315 DQPIS--ACCFNH-NGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp SSCEE--EEEECT-TSSCEEEEECCCSTTCGGGCC
T ss_pred CCCce--EEEECC-CCCeEEEEecccccccccccC
Confidence 34444 999999 899999999998666665443
No 97
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=1.9e-30 Score=284.73 Aligned_cols=268 Identities=18% Similarity=0.259 Sum_probs=219.1
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccc
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 412 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~ 412 (723)
..++|+++++|+.||.|++||+.+ +.+... +.+ |...|.+++| ++++|++|+.||+|++||+.++..
T Consensus 139 ~~~d~~~l~~g~~dg~i~iwd~~~----~~~~~~-~~~--h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~---- 205 (435)
T 1p22_A 139 LQYDDQKIVSGLRDNTIKIWDKNT----LECKRI-LTG--HTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM---- 205 (435)
T ss_dssp EECCSSEEEEEESSSCEEEEESSS----CCEEEE-ECC--CSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE----
T ss_pred EEECCCEEEEEeCCCeEEEEeCCC----CeEEEE-EcC--CCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE----
Confidence 455899999999999999999974 444443 554 9999999999 889999999999999999874322
Q ss_pred cceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcCCCcEE---EEEeCCCCCeEEEEEcC
Q 004924 413 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTL---ATFANPPPIATYFILLP 488 (723)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~I~vwd~~~~~~~---~~~~~~~~~v~~l~~~p 488 (723)
+.... +|...|.+++|+++.+++|+ ||.|++||+.++... ..+.+|...|.+++|
T Consensus 206 -----------------~~~~~--~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-- 264 (435)
T 1p22_A 206 -----------------LNTLI--HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-- 264 (435)
T ss_dssp -----------------EEEEC--CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--
T ss_pred -----------------EEEEc--CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--
Confidence 11111 68999999999988999999 999999999887765 667799999999999
Q ss_pred CC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCC
Q 004924 489 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 567 (723)
Q Consensus 489 ~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~ 567 (723)
++ .+++|+.||.|++||+++++.+..+.+|...|.++.|+ +..+++|+.||.|++||++++. .+. ...+|.
T Consensus 265 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~-----~~~-~~~~h~ 336 (435)
T 1p22_A 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGA-----CLR-VLEGHE 336 (435)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCC-----EEE-EECCCS
T ss_pred CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCC-----EEE-EEeCCc
Confidence 66 99999999999999999999999999999999999994 6899999999999999999864 333 234565
Q ss_pred CCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCc---------eeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcE
Q 004924 568 PETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN---------HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 637 (723)
Q Consensus 568 ~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~---------~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I 637 (723)
..|.+++| ++.++++ +.||.|++||+.++. ++..+. .|...|.+++| ++.+|++|+.||.|
T Consensus 337 ---~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~--~~~~l~s~s~Dg~i 407 (435)
T 1p22_A 337 ---ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV--EHSGRVFRLQF--DEFQIVSSSHDDTI 407 (435)
T ss_dssp ---SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC--CCSSCCCCEEE--CSSCEEECCSSSEE
T ss_pred ---CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc--CCCCCeEEEEe--CCCEEEEEeCCCEE
Confidence 78999998 6788888 589999999987665 666665 47889999999 78899999999999
Q ss_pred EEEECCCCcEEEEe
Q 004924 638 KVFDTSTLELRCQI 651 (723)
Q Consensus 638 ~iwd~~~~~~~~~~ 651 (723)
++||+.+.......
T Consensus 408 ~iwd~~~~~~~~~~ 421 (435)
T 1p22_A 408 LIWDFLNDPAAQAE 421 (435)
T ss_dssp EEEC----------
T ss_pred EEEECCCCCCcccC
Confidence 99999987654443
No 98
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=7.2e-31 Score=284.87 Aligned_cols=286 Identities=13% Similarity=0.088 Sum_probs=226.5
Q ss_pred cCCCCCEEE-EEeCCCeEEEEeecccCCCCce--eEEecCCCCCCCceEEEEEeC-CCCEEEEEECCCcEEEEeccCCcc
Q 004924 333 SLPDADSAV-CAKSLEKSVNLKLQLINEPSEC--RTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQ 408 (723)
Q Consensus 333 ~spdg~~la-~~s~dg~v~iw~~~~~~~~~~~--~~~~l~~~~h~~~V~~l~fsp-dg~~las~s~dg~i~iWd~~~~~~ 408 (723)
++|+...++ +++.||.|++|++... +.. ....+. +|.+.|.+++|+| ++++|++|+.||+|++|++.++..
T Consensus 42 ~~~~~~~~~~~~~~~g~i~v~~~~~~---~~~~~~~~~~~--~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 42 VNPKFMALICEASGGGAFLVLPLGKT---GRVDKNVPLVC--GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp ECSSEEEEEBCCSSSCCEEEEETTCC---EECCTTCCCBC--CCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred ECCCeEEEEEEEcCCCEEEEEECccC---CCCCCCCceEe--cCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 455554443 4788999999998642 211 011133 4999999999999 999999999999999999885432
Q ss_pred cccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--C-CEEEEEe-CCcEEEEEcCCCcEEEEE--eCCCCCeE
Q 004924 409 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-SHLFSAS-GGKISIFSLETFQTLATF--ANPPPIAT 482 (723)
Q Consensus 409 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~-~~l~s~s-dg~I~vwd~~~~~~~~~~--~~~~~~v~ 482 (723)
.. .. ...+..+. +|...|.+++|+ + .++++++ ||.|++||+.+++.+..+ .+|...|.
T Consensus 117 ~~-----~~---------~~~~~~~~--~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 180 (402)
T 2aq5_A 117 VL-----PL---------REPVITLE--GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIY 180 (402)
T ss_dssp SS-----CB---------CSCSEEEE--CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEE
T ss_pred cc-----cc---------CCceEEec--CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceE
Confidence 00 00 00011111 699999999999 4 6899999 999999999999999999 78999999
Q ss_pred EEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEE-cCcCCc-EEEEEEcCCCCEEEEE---eCCCcEEEEeCCCCceeec
Q 004924 483 YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL-KGHQNR-ITCLAYSLSLNVLVSS---GADAQLCVWDAVGWKKLCS 556 (723)
Q Consensus 483 ~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l-~~~~~~-i~~l~~spdg~~l~s~---s~dg~I~vwd~~~~~~~~~ 556 (723)
+++|+|++ .|++|+.||.|++||+++++.+..+ .+|.+. +.++.|+|++.++++| +.|+.|++||++++..
T Consensus 181 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~--- 257 (402)
T 2aq5_A 181 SVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE--- 257 (402)
T ss_dssp EEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS---
T ss_pred EEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC---
Confidence 99999999 9999999999999999999999988 788776 8999999999999999 7899999999988532
Q ss_pred eeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E-cCCcEEEEECCCCce-eEEecCCCCCCCeEEEEEeeCCcEEEEEeC
Q 004924 557 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNH-TSQLVPDKMDLPITYATYSCDGKCIYVSCK 633 (723)
Q Consensus 557 ~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~dg~I~vwd~~~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~sgs~ 633 (723)
++......+. ..+.+++|+|+++++++ + .|+.|++||+.+++. +..+....|...|.+++|+|++.++++ .
T Consensus 258 -~~~~~~~~~~---~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~ 331 (402)
T 2aq5_A 258 -PLSLQELDTS---SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--K 331 (402)
T ss_dssp -CSEEEECCCC---SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--G
T ss_pred -CceEEeccCC---CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--c
Confidence 1221222333 67999999999999975 5 699999999998874 444443345789999999999998875 5
Q ss_pred CCcEEEEECCCCcEE
Q 004924 634 SGHVKVFDTSTLELR 648 (723)
Q Consensus 634 dg~I~iwd~~~~~~~ 648 (723)
++.+++|++.++...
T Consensus 332 ~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 332 CEIARFYKLHERKCE 346 (402)
T ss_dssp TEEEEEEEEETTEEE
T ss_pred ceeEEEEEcCCCcEE
Confidence 679999999987654
No 99
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=1.1e-30 Score=283.26 Aligned_cols=288 Identities=11% Similarity=0.031 Sum_probs=229.4
Q ss_pred CceEEEEEeCCCCEEE-EEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---CC
Q 004924 375 GRVVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GS 450 (723)
Q Consensus 375 ~~V~~l~fspdg~~la-s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~ 450 (723)
.....++++|+...++ +++.||.|+||++..... ... .... ..+|...|.+++|+ ++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~----~~~-------------~~~~--~~~h~~~V~~~~~~p~~~~ 95 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGR----VDK-------------NVPL--VCGHTAPVLDIAWCPHNDN 95 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEE----CCT-------------TCCC--BCCCSSCEEEEEECTTCTT
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCC----CCC-------------CCce--EecCCCCEEEEEeCCCCCC
Confidence 3445688999876444 578899999999864211 000 0000 11699999999998 77
Q ss_pred EEEEEe-CCcEEEEEcCCC-------cEEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEEEEE--cCc
Q 004924 451 HLFSAS-GGKISIFSLETF-------QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL--KGH 518 (723)
Q Consensus 451 ~l~s~s-dg~I~vwd~~~~-------~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~~l--~~~ 518 (723)
+|++|+ ||+|++||+.++ +.+..+.+|...|++++|+|++ .+++|+.||.|++||+.+++.+..+ .+|
T Consensus 96 ~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 175 (402)
T 2aq5_A 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH 175 (402)
T ss_dssp EEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC
T ss_pred EEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC
Confidence 999999 999999999987 6678889999999999999997 8999999999999999999999999 889
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE----cCCcEE
Q 004924 519 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----HEGQID 594 (723)
Q Consensus 519 ~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s----~dg~I~ 594 (723)
...|.+++|+|++++|++++.||.|++||+++++ .+..+..+|.. ..+.+++|+|++.+++++ .|+.|+
T Consensus 176 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~~~d~~i~ 248 (402)
T 2aq5_A 176 PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT-----VVAEKDRPHEG--TRPVHAVFVSEGKILTTGFSRMSERQVA 248 (402)
T ss_dssp CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-----EEEEEECSSCS--SSCCEEEECSTTEEEEEEECTTCCEEEE
T ss_pred CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc-----eeeeeccCCCC--CcceEEEEcCCCcEEEEeccCCCCceEE
Confidence 9999999999999999999999999999999863 33333245542 348999999999999986 688999
Q ss_pred EEECCCCce-eEEecCCCCCCCeEEEEEeeCCcEEEE-EeCCCcEEEEECCCCcE-EEEeecccccCCCCccCccceEEE
Q 004924 595 VYEAPTLNH-TSQLVPDKMDLPITYATYSCDGKCIYV-SCKSGHVKVFDTSTLEL-RCQINLTAYAQPGTISLELYPLVI 671 (723)
Q Consensus 595 vwd~~~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~s-gs~dg~I~iwd~~~~~~-~~~~~~~~~~~~g~~~~~v~~~~v 671 (723)
+||+++++. ...... .+...+.+++|+|++++|++ |+.||.|++||+.+++. +..+..+. +...+. ++
T Consensus 249 iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~------~~~~v~--~~ 319 (402)
T 2aq5_A 249 LWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS------SKESQR--GM 319 (402)
T ss_dssp EEETTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC------CSSCCS--EE
T ss_pred EEcCccccCCceEEec-cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc------cCCccc--ce
Confidence 999998765 333322 45778999999999999974 55799999999999874 44443221 134455 99
Q ss_pred EEecCCCCEEEEEECCCcEEEEecCCCce
Q 004924 672 AAHPLEPNRIALGLTNGRVHVIEPLESEV 700 (723)
Q Consensus 672 ~~sp~d~~~las~s~Dg~v~iWd~~~~~~ 700 (723)
+|+| ++.++++ .|+.+++|++.+++.
T Consensus 320 ~~sp-~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 320 GYMP-KRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EECC-GGGSCGG--GTEEEEEEEEETTEE
T ss_pred EEec-cccccee--cceeEEEEEcCCCcE
Confidence 9999 7877764 577999999988754
No 100
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=4.1e-30 Score=270.90 Aligned_cols=253 Identities=13% Similarity=0.147 Sum_probs=208.2
Q ss_pred CCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---
Q 004924 372 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 448 (723)
Q Consensus 372 ~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--- 448 (723)
+|.+.|.+++|+|+|++|++|+.||+|++|++.+... .. .....+. +|...|.+++|+
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-----~~------------~~~~~~~--~~~~~v~~~~~~~~~ 69 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-----NW------------ELSDSWR--AHDSSIVAIDWASPE 69 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC-----CE------------EEEEEEE--CCSSCEEEEEECCGG
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC-----cc------------eecceec--cCCCcEEEEEEcCCC
Confidence 4999999999999999999999999999999874321 00 1111111 699999999998
Q ss_pred -CCEEEEEe-CCcEEEEEcCCC---------cEEEEEeCCCCCeEEEEEcCC--C-eEEEEECCCcEEEEeCCCCcEEEE
Q 004924 449 -GSHLFSAS-GGKISIFSLETF---------QTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKKTKAK 514 (723)
Q Consensus 449 -~~~l~s~s-dg~I~vwd~~~~---------~~~~~~~~~~~~v~~l~~~p~--~-~l~sgs~dg~I~iwd~~~~~~~~~ 514 (723)
+++|++++ ||.|++||+.++ +....+..|...|.+++|+|+ + .+++|+.||.|++||+++++.+..
T Consensus 70 d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 149 (351)
T 3f3f_A 70 YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS 149 (351)
T ss_dssp GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTC
T ss_pred CCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcc
Confidence 57999999 999999999887 567888899999999999999 8 999999999999999988765433
Q ss_pred Ec-------------CcCCcEEEEEEcCC---CCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEE
Q 004924 515 LK-------------GHQNRITCLAYSLS---LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 578 (723)
Q Consensus 515 l~-------------~~~~~i~~l~~spd---g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~ 578 (723)
+. +|...+.++.|+|+ +..+++++.|+.+.+|+...+.. ..+. ...+|. ..|.+++|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~-~~~~h~---~~i~~~~~ 222 (351)
T 3f3f_A 150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL---HVAA-KLPGHK---SLIRSISW 222 (351)
T ss_dssp CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE---EEEE-ECCCCC---SCEEEEEE
T ss_pred ccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce---eeee-ecCCCC---cceeEEEE
Confidence 22 57889999999997 89999999999998888877532 1223 234565 79999999
Q ss_pred ccCC----CEEEE-EcCCcEEEEECCCC----------------------------------------------ceeEEe
Q 004924 579 HPDQ----IHLLS-IHEGQIDVYEAPTL----------------------------------------------NHTSQL 607 (723)
Q Consensus 579 spdg----~~l~~-s~dg~I~vwd~~~~----------------------------------------------~~~~~~ 607 (723)
+|++ .+|++ +.||.|++||++++ +.+..+
T Consensus 223 ~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (351)
T 3f3f_A 223 APSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH 302 (351)
T ss_dssp CCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE
T ss_pred CCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE
Confidence 9998 78888 58999999999765 344444
Q ss_pred cCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEee
Q 004924 608 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 652 (723)
Q Consensus 608 ~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~ 652 (723)
. .|...|++++|+|++++|++|+.||.|++|++.+++....+.
T Consensus 303 ~--~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 303 D--DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp C--TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred e--cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 3 478899999999999999999999999999999987665543
No 101
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=8.3e-30 Score=268.53 Aligned_cols=250 Identities=14% Similarity=0.109 Sum_probs=206.8
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCC----cEEEEEeCCCCCeEEEEEcC--CC-eEEEEECCCcEEEEeC
Q 004924 437 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETF----QTLATFANPPPIATYFILLP--QD-LFAFGFDDSSILVHCP 506 (723)
Q Consensus 437 ~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~----~~~~~~~~~~~~v~~l~~~p--~~-~l~sgs~dg~I~iwd~ 506 (723)
+|.+.|++++|+ +++|++|+ ||.|++||+.++ +....+.+|...|++++|+| ++ .|++|+.||.|++||+
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~ 88 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEE 88 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEec
Confidence 799999999999 88999999 999999999876 46777889999999999999 58 9999999999999999
Q ss_pred CCC---------cEEEEEcCcCCcEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCceeeceeee-------eeecCCCC
Q 004924 507 CTK---------KTKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLH-------SFQTGLVP 568 (723)
Q Consensus 507 ~~~---------~~~~~l~~~~~~i~~l~~spd--g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~-------~~~~~~~~ 568 (723)
.++ +.+..+.+|...|.+++|+|+ +.++++++.||.|++||+++++........ .....+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~- 167 (351)
T 3f3f_A 89 DPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL- 167 (351)
T ss_dssp CTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCS-
T ss_pred CCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcc-
Confidence 887 567888899999999999999 999999999999999999886543322111 0112344
Q ss_pred CCCCeEEEEEccC---CCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCC----cEEEEEeCCCcEEEE
Q 004924 569 ETTIVNHIQFHPD---QIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG----KCIYVSCKSGHVKVF 640 (723)
Q Consensus 569 ~~~~v~~l~~spd---g~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg----~~l~sgs~dg~I~iw 640 (723)
..+.+++|+|+ +..+++ +.++.+.+|+...++.........|...|.+++|+|++ ++|++|+.||.|++|
T Consensus 168 --~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iw 245 (351)
T 3f3f_A 168 --QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIF 245 (351)
T ss_dssp --CCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEE
T ss_pred --cceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEE
Confidence 78999999997 888888 58888888888777653333334679999999999998 899999999999999
Q ss_pred ECCCCc----------------------------------------------EEEEeecccccCCCCccCccceEEEEEe
Q 004924 641 DTSTLE----------------------------------------------LRCQINLTAYAQPGTISLELYPLVIAAH 674 (723)
Q Consensus 641 d~~~~~----------------------------------------------~~~~~~~~~~~~~g~~~~~v~~~~v~~s 674 (723)
|+.++. .+..+. +| ...+ ++++|+
T Consensus 246 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h-~~~v--~~~~~s 315 (351)
T 3f3f_A 246 KITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD-------DH-NGEV--WSVSWN 315 (351)
T ss_dssp EEEECC---------------------------------------CCSEEEEEEEEEC-------TT-SSCE--EEEEEC
T ss_pred eCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe-------cc-cccE--EEEEEc
Confidence 998752 222222 22 3344 499999
Q ss_pred cCCCCEEEEEECCCcEEEEecCCCce
Q 004924 675 PLEPNRIALGLTNGRVHVIEPLESEV 700 (723)
Q Consensus 675 p~d~~~las~s~Dg~v~iWd~~~~~~ 700 (723)
| ++++|++++.||.|+||++.+++.
T Consensus 316 ~-~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 316 L-TGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp S-SSCCEEEEETTSCEEEEEECTTSC
T ss_pred C-CCCEEEEecCCCcEEEEecCcCcc
Confidence 9 899999999999999999988763
No 102
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.98 E-value=2.5e-30 Score=284.00 Aligned_cols=301 Identities=10% Similarity=0.080 Sum_probs=217.8
Q ss_pred cccCCCCCEEEEEeCCCeEEEEeecccCC-----CCce-eEEecCCCCCC------------CceEEEEEeCCC--CEEE
Q 004924 331 STSLPDADSAVCAKSLEKSVNLKLQLINE-----PSEC-RTLLLPDNSFG------------GRVVRLIYSHSG--DFLV 390 (723)
Q Consensus 331 ~~~spdg~~la~~s~dg~v~iw~~~~~~~-----~~~~-~~~~l~~~~h~------------~~V~~l~fspdg--~~la 390 (723)
..++|+|++||+|+.||.|+||++.+... .... ....+.+ |. ..|.+++|+|++ .+|+
T Consensus 34 v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~--h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~ 111 (447)
T 3dw8_B 34 VEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQS--HEPEFDYLKSLEIEEKINKIRWLPQKNAAQFL 111 (447)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEEC--CCCEEEGGGTEEECCCCCEEEECCCCSSSEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccc--ccccccccccccccCceEEEEEcCCCCcceEE
Confidence 44899999999999999999999985320 0111 1222444 87 889999999998 8999
Q ss_pred EEECCCcEEEEeccCCccc---------cccc-----ce-----eeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--C
Q 004924 391 ALTQTATHKLWKWQSNKQS---------LEEE-----NV-----NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 449 (723)
Q Consensus 391 s~s~dg~i~iWd~~~~~~~---------~g~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~ 449 (723)
+++.|++|++|++...... .|.. .. ...+.-|.... .... ....+|...|.+++|+ +
T Consensus 112 s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~h~~~v~~~~~~~~~ 189 (447)
T 3dw8_B 112 LSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEA-SPRR-IFANAHTYHINSISINSDY 189 (447)
T ss_dssp EEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEE-EEEE-EECSCCSSCCCEEEECTTS
T ss_pred EeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeec-cceE-EeccCCCcceEEEEEcCCC
Confidence 9999999999998753220 0000 00 00000000000 0001 1122699999999999 8
Q ss_pred CEEEEEeCCcEEEEEcCC-CcEEEE-------EeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcE----EEEE
Q 004924 450 SHLFSASGGKISIFSLET-FQTLAT-------FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT----KAKL 515 (723)
Q Consensus 450 ~~l~s~sdg~I~vwd~~~-~~~~~~-------~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~----~~~l 515 (723)
++|++|.||.|++||+.+ ++.... +.+|...|++++|+|++ .+++|+.||.|++||+++++. +..+
T Consensus 190 ~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 269 (447)
T 3dw8_B 190 ETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLF 269 (447)
T ss_dssp SEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEE
T ss_pred CEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEe
Confidence 899988799999999984 444442 45889999999999997 999999999999999999887 7888
Q ss_pred cCcCC------------cEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceeeceeeeeeecCCCCCCC-----------
Q 004924 516 KGHQN------------RITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETT----------- 571 (723)
Q Consensus 516 ~~~~~------------~i~~l~~spdg~~l~s~s~dg~I~vwd~~~-~~~~~~~~l~~~~~~~~~~~~----------- 571 (723)
.+|.. .|.+++|+|+|++|++++. +.|++||+++ +.. +..+ .+|.....
T Consensus 270 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~-----~~~~-~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 270 EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRP-----VETY-QVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSC-----SCCE-ESCGGGTTTHHHHHHTSGG
T ss_pred ccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccc-----ccee-ecccccccccccccccccc
Confidence 88876 8999999999999999999 9999999986 432 2212 22220000
Q ss_pred -CeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecC------------------------------CCCCCCeEEE
Q 004924 572 -IVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVP------------------------------DKMDLPITYA 619 (723)
Q Consensus 572 -~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~------------------------------~~h~~~v~~l 619 (723)
.+..++|+|++++|+++ .||.|++||+.+++.+..... ..+...|..+
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 422 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT 422 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred ccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence 13359999999999985 899999999998876531110 0234578899
Q ss_pred EEeeCCcEEEEEeCCCcEEEEECC
Q 004924 620 TYSCDGKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 620 ~~spdg~~l~sgs~dg~I~iwd~~ 643 (723)
+|+|++++||+++.++ +++|..+
T Consensus 423 ~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 423 AWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp EECSSSSEEEEECSSC-EEEEECC
T ss_pred EECCCCCEEEEEecce-eeeeccc
Confidence 9999999999998776 8888654
No 103
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.98 E-value=2e-29 Score=288.44 Aligned_cols=293 Identities=13% Similarity=0.119 Sum_probs=241.4
Q ss_pred CCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCC-eEEEEEe--
Q 004924 372 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS-ISCFALR-- 448 (723)
Q Consensus 372 ~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~v~~s-- 448 (723)
.|.+.|.+++|+|+|++|++++ ++.|++|++.++..+. .. ...+. +|... |.+++|+
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~-~~----------------~~~~~--~h~~~~v~~~~~sp~ 75 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKV-PP----------------VVQFT--GHGSSVVTTVKFSPI 75 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSS-CS----------------EEEEC--TTTTSCEEEEEECSS
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCcc-cc----------------ceEEe--cCCCceEEEEEECcC
Confidence 4899999999999999999998 7899999987431000 11 11111 69999 9999998
Q ss_pred --CCEEEEEe-CCcEEEEEcCCC--------cEEEEEeCCCCCeEEEEEcCCC-eEEEEECC----CcEEEEeCCCCcEE
Q 004924 449 --GSHLFSAS-GGKISIFSLETF--------QTLATFANPPPIATYFILLPQD-LFAFGFDD----SSILVHCPCTKKTK 512 (723)
Q Consensus 449 --~~~l~s~s-dg~I~vwd~~~~--------~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~d----g~I~iwd~~~~~~~ 512 (723)
+++|++++ ||.|++||+.++ +....+..|...|.+++|+|++ .+++++.+ +.|++|| +++.+
T Consensus 76 ~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~ 153 (615)
T 1pgu_A 76 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSL 153 (615)
T ss_dssp TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEE
T ss_pred CCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcc
Confidence 47999999 999999999755 6777888999999999999999 99999987 6888888 67788
Q ss_pred EEEcCcCCcEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCC---CeEEEEEccC-CCEEEE
Q 004924 513 AKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT---IVNHIQFHPD-QIHLLS 587 (723)
Q Consensus 513 ~~l~~~~~~i~~l~~spdg~-~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~---~v~~l~~spd-g~~l~~ 587 (723)
..+.+|...|.+++|+|++. .+++++.|+.|++||+.+++ .+. ...+|. . .|.+++|+|+ ++++++
T Consensus 154 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-----~~~-~~~~~~---~~~~~v~~~~~~~~~~~~l~~ 224 (615)
T 1pgu_A 154 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-----FSA-SDRTHH---KQGSFVRDVEFSPDSGEFVIT 224 (615)
T ss_dssp EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-----EEE-EECSSS---CTTCCEEEEEECSTTCCEEEE
T ss_pred eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc-----eee-eecccC---CCCceEEEEEECCCCCCEEEE
Confidence 99999999999999999998 89999999999999998853 233 233454 5 8999999999 999998
Q ss_pred -EcCCcEEEEECCCCceeEEecCC--CCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccC
Q 004924 588 -IHEGQIDVYEAPTLNHTSQLVPD--KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISL 664 (723)
Q Consensus 588 -s~dg~I~vwd~~~~~~~~~~~~~--~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~ 664 (723)
+.|+.|++||+.+++.+..+... .|...|.+++|+ ++.+|++++.||.|++||+.+++.+..+..+. . ..
T Consensus 225 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~----~--~~ 297 (615)
T 1pgu_A 225 VGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK----Q--QL 297 (615)
T ss_dssp EETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT----T--CG
T ss_pred EeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC----C--cc
Confidence 58999999999999988877321 468999999999 99999999999999999999999888876431 0 11
Q ss_pred ccceEEEEEecCCCCEEEEEECCCcEEEEecCCCceeeec
Q 004924 665 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK 704 (723)
Q Consensus 665 ~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~w~~ 704 (723)
...+.++.|. ++.++++++.||.|++||+.+++.....
T Consensus 298 ~~~~~~~~~~--~~~~l~~~~~~g~i~~~d~~~~~~~~~~ 335 (615)
T 1pgu_A 298 GNQQVGVVAT--GNGRIISLSLDGTLNFYELGHDEVLKTI 335 (615)
T ss_dssp GGCEEEEEEE--ETTEEEEEETTSCEEEEETTEEEEEEEE
T ss_pred cCceeEEEeC--CCCeEEEEECCCCEEEEECCCCcEEEEE
Confidence 1234477774 5789999999999999999887654433
No 104
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.1e-31 Score=297.31 Aligned_cols=293 Identities=11% Similarity=0.021 Sum_probs=212.5
Q ss_pred ccCCCC-CCceeeeCCCcccccccCCCCCEEEEEeCCCeEEEEeecccCCCC-ce-----eEEecCCCCCCCceEEEEEe
Q 004924 311 SSGDDS-NDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPS-EC-----RTLLLPDNSFGGRVVRLIYS 383 (723)
Q Consensus 311 ~~~h~~-v~s~~~~~~~~~~~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~-~~-----~~~~l~~~~h~~~V~~l~fs 383 (723)
+.+|.+ +.++.|.+.. ..++++.+||+++.||+|++|++....... .. ....+.+ |...|++++|+
T Consensus 203 l~~~~~~V~~v~wsp~~-----~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~--h~~~v~sv~~s 275 (524)
T 2j04_B 203 IVHSFGEVWDLKWHEGC-----HAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSL--ADSLITTFDFL 275 (524)
T ss_dssp EEECCCSEEEEEECSSC-----CCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECC--TTTCEEEEEES
T ss_pred EEecCCcEEEEEECCCC-----CCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEc--CCCCEEEEEec
Confidence 344444 5555555531 134567899999999999999997532110 00 0112444 99999999999
Q ss_pred CCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEE--Ee--C-CEEEEEe-C
Q 004924 384 HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA--LR--G-SHLFSAS-G 457 (723)
Q Consensus 384 pdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~--~s--~-~~l~s~s-d 457 (723)
|++ .|++|+.||+|++||+.++.. ... ... +|...|.+++ |+ + .+||+|+ |
T Consensus 276 ~~~-~lasgs~DgtV~lWD~~~~~~----~~~-------------~~~-----~H~~~V~sv~~~~s~~g~~~laS~S~D 332 (524)
T 2j04_B 276 SPT-TVVCGFKNGFVAEFDLTDPEV----PSF-------------YDQ-----VHDSYILSVSTAYSDFEDTVVSTVAVD 332 (524)
T ss_dssp SSS-EEEEEETTSEEEEEETTBCSS----CSE-------------EEE-----CSSSCEEEEEEECCTTSCCEEEEEETT
T ss_pred CCC-eEEEEeCCCEEEEEECCCCCC----ceE-------------Eee-----cccccEEEEEEEcCCCCCeEEEEeccC
Confidence 875 799999999999999874321 000 011 6999999994 56 5 6899999 9
Q ss_pred CcEEEEEcCCCcEEEEEeCCCC--CeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEE
Q 004924 458 GKISIFSLETFQTLATFANPPP--IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 534 (723)
Q Consensus 458 g~I~vwd~~~~~~~~~~~~~~~--~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l 534 (723)
++|++||+.++++...+.+|.. .|.+++|+|++ .+++++.|++|++||++++.++..+.+|.+.|++++|+|+|+.|
T Consensus 333 ~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l 412 (524)
T 2j04_B 333 GYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMV 412 (524)
T ss_dssp SEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBC
T ss_pred CeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeE
Confidence 9999999999888777766643 57899999999 99999999999999999999888899999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceeeceeeeeeec---CCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECC-CCceeEEecCC
Q 004924 535 VSSGADAQLCVWDAVGWKKLCSKFLHSFQT---GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP-TLNHTSQLVPD 610 (723)
Q Consensus 535 ~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~---~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~-~~~~~~~~~~~ 610 (723)
++|+.||+|++||+..+ .+..... .+.. ..+.+++|+|++..+.... .+.+|+.. ++.++..+.
T Consensus 413 ~Sgs~Dgtv~lwd~~~~------~~~~~~~~~~~~~~--~~v~~v~~sp~g~~~~~~~--~~~~~~~~~~g~~~~~l~-- 480 (524)
T 2j04_B 413 LAGSADGSLIITNAARR------LLHGIKNSSATQKS--LRLWKWDYSIKDDKYRIDS--SYEVYPLTVNDVSKAKID-- 480 (524)
T ss_dssp EEEETTTEEECCBSCSS------TTTCC------CCC--CEEEECBCCSSSCEEEECC--CCCCCC--------------
T ss_pred EEEECCCEEEEEechHh------hccccccCccceee--eEEEEeccCCCCCeEEccC--CceecccccCCcceeeec--
Confidence 99999999999998763 1121110 1110 2577999999998553322 23344332 455555654
Q ss_pred CCCCCeEEEEEeeCCc---EEEEEeCCCcEEEEECCCC
Q 004924 611 KMDLPITYATYSCDGK---CIYVSCKSGHVKVFDTSTL 645 (723)
Q Consensus 611 ~h~~~v~~l~~spdg~---~l~sgs~dg~I~iwd~~~~ 645 (723)
+|...|.+++|+|++. ++++|+.||.|+||++...
T Consensus 481 gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 481 AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp -CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred CCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 4689999999999964 9999999999999998643
No 105
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.1e-30 Score=273.75 Aligned_cols=248 Identities=12% Similarity=0.074 Sum_probs=206.3
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcC--CCcEEEEEeCCCCCeEEEEEcCC--C-eEEEEECCCcEEEEeCCC
Q 004924 437 DPKDSISCFALR--GSHLFSAS-GGKISIFSLE--TFQTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCT 508 (723)
Q Consensus 437 ~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~--~~~~~~~~~~~~~~v~~l~~~p~--~-~l~sgs~dg~I~iwd~~~ 508 (723)
+|...|.+++|+ +++|++|+ ||.|++||+. +++....+.+|...|++++|+++ + .|++|+.||.|++||+.+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 88 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC
Confidence 699999999999 88999999 9999999998 66778888999999999999977 7 999999999999999999
Q ss_pred Cc--EEEEEcCcCCcEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEcc----
Q 004924 509 KK--TKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---- 580 (723)
Q Consensus 509 ~~--~~~~l~~~~~~i~~l~~spd--g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~sp---- 580 (723)
++ .+..+.+|...|.+++|+|+ +..+++++.|+.|++||++++..... . ...+|. ..|.+++|+|
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~---~-~~~~~~---~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP---I-IIDAHA---IGVNSASWAPATIE 161 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE---E-EEECCT---TCEEEEEECCCC--
T ss_pred CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee---E-EecCCC---CceEEEEEcCcccc
Confidence 87 77888889999999999999 99999999999999999988533221 1 233455 7899999999
Q ss_pred ---------CCCEEEE-EcCCcEEEEECCCCce----eEEecCCCCCCCeEEEEEeeC---CcEEEEEeCCCcEEEEECC
Q 004924 581 ---------DQIHLLS-IHEGQIDVYEAPTLNH----TSQLVPDKMDLPITYATYSCD---GKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 581 ---------dg~~l~~-s~dg~I~vwd~~~~~~----~~~~~~~~h~~~v~~l~~spd---g~~l~sgs~dg~I~iwd~~ 643 (723)
++.++++ +.|+.|++||++++.. ...+. .|...|.+++|+|+ +.+|++++.||.|++||+.
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe--cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 6888888 5899999999987653 23343 57899999999999 8999999999999999999
Q ss_pred CCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 644 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 644 ~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
++.......... . ..+... +.+++|+| ++.+|++++.||.|++|++..+.
T Consensus 240 ~~~~~~~~~~~~--~-~~~~~~--v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 240 NEQGPWKKTLLK--E-EKFPDV--LWRASWSL-SGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp STTSCCEEEESS--S-SCCSSC--EEEEEECS-SSCCEEEEESSSSEEEEEEEETT
T ss_pred CCCccceeeeec--c-ccCCCc--EEEEEEcC-CCCEEEEecCCCcEEEEeCCCCC
Confidence 875221111100 0 112333 44999999 89999999999999999998643
No 106
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=3.1e-29 Score=264.80 Aligned_cols=274 Identities=11% Similarity=0.022 Sum_probs=219.4
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCC-EEEEEECCCcEEEEec-cCCccc
Q 004924 332 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWKW-QSNKQS 409 (723)
Q Consensus 332 ~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~-~las~s~dg~i~iWd~-~~~~~~ 409 (723)
.++|+|+++++++.|+.|++|++............ .+ |...|.+++|+|+++ +|++|+.||.|++|++ .++..
T Consensus 18 ~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~--~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~- 92 (342)
T 1yfq_A 18 KIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS--LR--YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF- 92 (342)
T ss_dssp EEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE--EE--CSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-
T ss_pred EEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee--ee--cCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-
Confidence 37788999999999999999999853110113322 23 999999999999999 9999999999999998 64221
Q ss_pred ccccceeeeeEEEecCCCeeeeeccCCC--CCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCC---------CcEEEEEeC
Q 004924 410 LEEENVNMESQLYQPSSKLVMTNDIAAD--PKDSISCFALR-GSHLFSAS-GGKISIFSLET---------FQTLATFAN 476 (723)
Q Consensus 410 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~V~~v~~s-~~~l~s~s-dg~I~vwd~~~---------~~~~~~~~~ 476 (723)
... .+ |...|.+++|+ ++++++++ |+.|++||+.+ ++.+..+.
T Consensus 93 ---------------------~~~--~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~- 148 (342)
T 1yfq_A 93 ---------------------QAL--TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK- 148 (342)
T ss_dssp ---------------------EEC--BSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-
T ss_pred ---------------------Eec--cccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-
Confidence 001 15 99999999999 99999999 99999999987 66666665
Q ss_pred CCCCeEEEEEcCCCeEEEEECCCcEEEEeCCC-Cc--EEEEEcCcCCcEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCC-
Q 004924 477 PPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KK--TKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGW- 551 (723)
Q Consensus 477 ~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~-~~--~~~~l~~~~~~i~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~- 551 (723)
|...+.+++|+|++ +++++.|+.|++||+++ +. .......|...|.+++|+| +++++++++.||.|++||++..
T Consensus 149 ~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~ 227 (342)
T 1yfq_A 149 VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227 (342)
T ss_dssp SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTC
T ss_pred eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCC
Confidence 88899999999886 99999999999999988 54 3345566889999999999 9999999999999999999874
Q ss_pred -ceeeceeeeeeecCCCC------CCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCC-CCCeEEEEEe
Q 004924 552 -KKLCSKFLHSFQTGLVP------ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM-DLPITYATYS 622 (723)
Q Consensus 552 -~~~~~~~l~~~~~~~~~------~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h-~~~v~~l~~s 622 (723)
... ..... ....|.. ....|.+++|+|++++|++ +.||.|++||+.+++.+..+.. | ...|.+++
T Consensus 228 ~~~~-~~~~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~h~~~v~~~~-- 301 (342)
T 1yfq_A 228 DDYN-SSKRF-AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK--FNEDSVVKIA-- 301 (342)
T ss_dssp CSTT-CTTCE-EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC--CSSSEEEEEE--
T ss_pred cccc-cccce-eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhc--ccCCCceEec--
Confidence 100 01112 1222220 0148999999999999998 5899999999999999888753 4 88999999
Q ss_pred eCCcEEEEEeCCCc-EEEEE
Q 004924 623 CDGKCIYVSCKSGH-VKVFD 641 (723)
Q Consensus 623 pdg~~l~sgs~dg~-I~iwd 641 (723)
|++++|++|+.||. .+.|.
T Consensus 302 ~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 302 CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp ECSSEEEEEEECTHHHHCSS
T ss_pred CCCCeEEEEecCCccccccc
Confidence 99999999999998 54444
No 107
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.2e-29 Score=275.29 Aligned_cols=301 Identities=13% Similarity=0.089 Sum_probs=227.6
Q ss_pred CCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCC--------------------------
Q 004924 374 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK-------------------------- 427 (723)
Q Consensus 374 ~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~-------------------------- 427 (723)
..++.+++|+|+|++|+++ .++.|++||+.++... ... ..|.....
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHW--EFA-----GKWSDDFDKIQESRNTTAKEQQGQSSENENENKK 75 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEE--EEE-----EEEECCC---------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcc--eee-----eecCCccccccccccccchhhccccccccccccc
Confidence 4578899999999966555 5789999999865510 000 11111000
Q ss_pred ---------------eeeeeccCCCCCCCeEEEEEe--CCEE-EEEe-CCcEEEEEcC--CCcEEEEEe--CCCCCeEEE
Q 004924 428 ---------------LVMTNDIAADPKDSISCFALR--GSHL-FSAS-GGKISIFSLE--TFQTLATFA--NPPPIATYF 484 (723)
Q Consensus 428 ---------------~~~~~~~~~~h~~~V~~v~~s--~~~l-~s~s-dg~I~vwd~~--~~~~~~~~~--~~~~~v~~l 484 (723)
.........+|.+.|.+++|+ +++| ++++ ||.|++||+. +++.+..+. .+...|+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 155 (450)
T 2vdu_B 76 LKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAI 155 (450)
T ss_dssp ------------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEE
T ss_pred cccCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEE
Confidence 000000011467789999999 7785 8887 9999999999 888888886 667889999
Q ss_pred EEcCCC-eEEEEECCCcEEEEeCCCCcEEE----EEcCcCCcEEEEEEcCC---CCEEEEEeCCCcEEEEeCCCCceeec
Q 004924 485 ILLPQD-LFAFGFDDSSILVHCPCTKKTKA----KLKGHQNRITCLAYSLS---LNVLVSSGADAQLCVWDAVGWKKLCS 556 (723)
Q Consensus 485 ~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~----~l~~~~~~i~~l~~spd---g~~l~s~s~dg~I~vwd~~~~~~~~~ 556 (723)
+|+|++ .|++|+.+|.|++|++.+++... .+.+|...|.+++|+|+ +++|++++.|+.|++||+.++.
T Consensus 156 ~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~---- 231 (450)
T 2vdu_B 156 SIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF---- 231 (450)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT----
T ss_pred EEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc----
Confidence 999999 99999999999999998876543 67789999999999999 9999999999999999998853
Q ss_pred eeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCC-----------------------CC
Q 004924 557 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD-----------------------KM 612 (723)
Q Consensus 557 ~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~-----------------------~h 612 (723)
.+..+..+|. ..|.+++|+ ++++|++ +.|+.|++||+.+++++..+... ..
T Consensus 232 -~~~~~~~~h~---~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
T 2vdu_B 232 -IVDKWLFGHK---HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDII 306 (450)
T ss_dssp -CEEEECCCCS---SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CB
T ss_pred -eeeeeecCCC---CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccc
Confidence 2333345666 799999999 9999998 58999999999999988777521 12
Q ss_pred CCCeEEEEEeeCCcEEEEEe-CCCcEEEEEC--CCC---cEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEEC
Q 004924 613 DLPITYATYSCDGKCIYVSC-KSGHVKVFDT--STL---ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 686 (723)
Q Consensus 613 ~~~v~~l~~spdg~~l~sgs-~dg~I~iwd~--~~~---~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~ 686 (723)
...|.+++|+|++++|++++ .|+.|++|++ .++ +.+..+.. + .. +.+++|+| ++.++++++.
T Consensus 307 ~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~-------~--~~--v~~~~~~~-~~~~v~~~~~ 374 (450)
T 2vdu_B 307 EFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITF-------P--YN--VISLSAHN-DEFQVTLDNK 374 (450)
T ss_dssp CCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC-------S--SC--EEEEEEET-TEEEEEECCT
T ss_pred eEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEecc-------C--Cc--eEEEEecC-CcEEEEEecc
Confidence 46799999999999999999 8999999999 555 44555542 1 23 45999999 5434444333
Q ss_pred ------CCcEEEEecCCCceeee
Q 004924 687 ------NGRVHVIEPLESEVEWG 703 (723)
Q Consensus 687 ------Dg~v~iWd~~~~~~~w~ 703 (723)
+..|.+|.+.....+|.
T Consensus 375 ~~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 375 ESSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp TCCSSCCCSEEEEEEETTTTEEE
T ss_pred cCCCCCCcceEEEEEEcCCCeEE
Confidence 55689998766544553
No 108
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=2.1e-28 Score=267.71 Aligned_cols=280 Identities=16% Similarity=0.124 Sum_probs=225.8
Q ss_pred CCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCE
Q 004924 374 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 451 (723)
Q Consensus 374 ~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~ 451 (723)
...+.+++|+|++.++++++.|+.|++||..++.. .... ..+ . ..+|...|.+++|+ +.+
T Consensus 122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~-----~~~~-------~~~----~--~~~~~~~v~~~~~~~~~~~ 183 (433)
T 3bws_A 122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQT-----VRLS-------PPE----K--YKKKLGFVETISIPEHNEL 183 (433)
T ss_dssp SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCE-----EEEC-------CCH----H--HHTTCCEEEEEEEGGGTEE
T ss_pred CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeE-----eeec-------Ccc----c--ccccCCceeEEEEcCCCEE
Confidence 45567999999888888888899999999875332 1100 000 0 01688999999998 778
Q ss_pred EEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eE-EEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEc
Q 004924 452 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF-AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 528 (723)
Q Consensus 452 l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l-~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~s 528 (723)
+++++ |+.|++||+.+++.+..+..|...+.+++|+|++ .+ ++++.|+.|++||+++++.+..+..+ ..+.+++|+
T Consensus 184 ~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~ 262 (433)
T 3bws_A 184 WVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLS 262 (433)
T ss_dssp EEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEEC
T ss_pred EEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEc
Confidence 88888 8999999999999999999999999999999999 66 45558999999999999988888754 459999999
Q ss_pred CCCCEEEEEe--------CCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E-cCCcEEEEEC
Q 004924 529 LSLNVLVSSG--------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEA 598 (723)
Q Consensus 529 pdg~~l~s~s--------~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~dg~I~vwd~ 598 (723)
|+|+.+++++ .|+.|++||+.+++.... + .+. ..+.+++|+|+++.+++ + .++.|++||+
T Consensus 263 ~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~-----~--~~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~ 332 (433)
T 3bws_A 263 KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT-----I--GPP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDL 332 (433)
T ss_dssp TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE-----E--EEE---ECEEEEEECSSTTEEEEEETTTTEEEEEET
T ss_pred CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee-----c--cCC---CCcceEEECCCCCEEEEEecCCCEEEEEEC
Confidence 9999999888 588999999998643221 1 121 46889999999987655 3 8899999999
Q ss_pred CCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeC---------------CCcEEEEECCCCcEEEEeecccccCCCCcc
Q 004924 599 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK---------------SGHVKVFDTSTLELRCQINLTAYAQPGTIS 663 (723)
Q Consensus 599 ~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~---------------dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~ 663 (723)
.+++.+..+. +...+.+++|+|+|+++++++. ||.|++||..+++.+..+.. .
T Consensus 333 ~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---------~ 400 (433)
T 3bws_A 333 KEKKVQKSIP---VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA---------G 400 (433)
T ss_dssp TTTEEEEEEE---CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC---------S
T ss_pred CCCcEEEEec---CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC---------C
Confidence 9998887774 3677999999999999998876 57999999999998887753 2
Q ss_pred CccceEEEEEecCCCCEEEEEEC-CCcEEEEecCC
Q 004924 664 LELYPLVIAAHPLEPNRIALGLT-NGRVHVIEPLE 697 (723)
Q Consensus 664 ~~v~~~~v~~sp~d~~~las~s~-Dg~v~iWd~~~ 697 (723)
.. +.+++|+| ++++|++++. |+.|++|++..
T Consensus 401 ~~--~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 401 NQ--PTGLDVSP-DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SS--EEEEEECT-TSCEEEEEETTTTEEEEEEETT
T ss_pred CC--CceEEEcC-CCCEEEEEECCCCeEEEEEecC
Confidence 22 45999999 8999988875 99999999863
No 109
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.7e-30 Score=277.96 Aligned_cols=265 Identities=12% Similarity=0.107 Sum_probs=205.8
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCE
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 451 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~ 451 (723)
-...|.+++|||||+++||++.|++|+ |.... ..+ .+|...|.+++|+ ..
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~---------------------~~l-----~gh~~~v~~V~FsPdg- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA---------------------KDI-----NCNSKNLFHVKEFPLE- 64 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCC---------------------SCC-----SSBGGGTEEEEEECCC-
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--ccccc---------------------cee-----cCCCccEEEEEECCCC-
Confidence 467999999999999999999999998 53321 111 1699999999998 22
Q ss_pred EEEEeCCcEEEEEcCCCcEEEEEe-CCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCC-----cEEE
Q 004924 452 LFSASGGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN-----RITC 524 (723)
Q Consensus 452 l~s~sdg~I~vwd~~~~~~~~~~~-~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~-----~i~~ 524 (723)
.++.|++.+++....+. .|...|.+++|+|+| .||+++.||.|++||..+ ++..+. |.. .|.+
T Consensus 65 -------~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~s 134 (588)
T 2j04_A 65 -------FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHC 134 (588)
T ss_dssp -------CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEE
T ss_pred -------CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEE
Confidence 34444444444333333 557889999999999 999999999999999543 666667 665 4999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCceeec--eeeeee---ecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECC
Q 004924 525 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS--KFLHSF---QTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP 599 (723)
Q Consensus 525 l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~--~~l~~~---~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~ 599 (723)
++|+|||++|++|+.||+|++||+.++..... ..+.++ ..+|. ..|.+++|+||| .++++.|+.|++||+.
T Consensus 135 vafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~---~~V~sVawSPdg-Laass~D~tVrlWd~~ 210 (588)
T 2j04_A 135 FEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSK---DWVTHIVWYEDV-LVAALSNNSVFSMTVS 210 (588)
T ss_dssp EEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCC---CCEEEEEEETTE-EEEEETTCCEEEECCC
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccccc---ccEEEEEEcCCc-EEEEeCCCeEEEEECC
Confidence 99999999999999999999999998632110 123333 25565 799999999999 5555799999999998
Q ss_pred CCce---eEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEE--e
Q 004924 600 TLNH---TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA--H 674 (723)
Q Consensus 600 ~~~~---~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~--s 674 (723)
++.. ..++.. .|...|.+++|+ |+.||+++ ++.|++||+.+++...... | |...++ +++| +
T Consensus 211 ~~~~~~~~~tL~~-~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~-------g-h~~~V~--~va~~~s 276 (588)
T 2j04_A 211 ASSHQPVSRMIQN-ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT-------G-SLENFH--IIPLNHE 276 (588)
T ss_dssp SSSSCCCEEEEEC-CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC-------S-CCSCCC--EEEETTC
T ss_pred CCccccceeeecc-cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc-------C-CCceEE--EEEeeeC
Confidence 7773 234533 467899999999 68999987 6999999999887643322 3 355566 8999 9
Q ss_pred cCCCCEEEEEECCCcEEEEecC
Q 004924 675 PLEPNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 675 p~d~~~las~s~Dg~v~iWd~~ 696 (723)
| ++..+++++.||+ ++|...
T Consensus 277 ~-d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 277 K-ESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp S-SCEEEEECSSCEE-EEEESS
T ss_pred C-CCCEEEEEcCCCC-EEEeec
Confidence 9 8899999999999 999975
No 110
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.2e-29 Score=264.88 Aligned_cols=280 Identities=9% Similarity=0.019 Sum_probs=214.8
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccc
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 412 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~ 412 (723)
.++++..+++|+.||+|++||+.+ ......+ ....|.++.|+|+ +++++.|++|++|+..
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~---~~~~~~~------~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~-------- 103 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKD---SKTITTI------TTPNPRTGGEHPA---IISRGPCNRLLLLYPG-------- 103 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESS---SSCEEEE------EEECCCTTCCCCS---EEEECSTTEEEEEETT--------
T ss_pred hcCCCCEEEEECCCCcEEEEECCC---CcEEEEE------ecCCceeeeeCCc---eEEecCCCeEEEEEcc--------
Confidence 667899999999999999999985 2222222 2456778889888 8999999999999854
Q ss_pred cceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEeCCcEEEEEcCCCcEEEEEe-CCCCCeEEEEEcC--C
Q 004924 413 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFA-NPPPIATYFILLP--Q 489 (723)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~sdg~I~vwd~~~~~~~~~~~-~~~~~v~~l~~~p--~ 489 (723)
+.+.+|++.+++.+..+. +|...|.+++|+| +
T Consensus 104 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 138 (343)
T 3lrv_A 104 ---------------------------------------------NQITILDSKTNKVLREIEVDSANEIIYMYGHNEVN 138 (343)
T ss_dssp ---------------------------------------------TEEEEEETTTCCEEEEEECCCSSCEEEEECCC---
T ss_pred ---------------------------------------------CceEEeecCCcceeEEeecCCCCCEEEEEcCCCCC
Confidence 245577877777666665 7778899999999 9
Q ss_pred C-eEEEEECCCcEEEEeCCCCcEEEEEcC-cCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCC
Q 004924 490 D-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 567 (723)
Q Consensus 490 ~-~l~sgs~dg~I~iwd~~~~~~~~~l~~-~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~ 567 (723)
+ .+++|+.||.|++||+++++....... |...|.+++|+|+|.++++|+.||.|++||+++++.. ...+..+|.
T Consensus 139 ~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~----~~~~~~~h~ 214 (343)
T 3lrv_A 139 TEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA----SSRFPVDEE 214 (343)
T ss_dssp CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC----CEECCCCTT
T ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC----ccEEeccCC
Confidence 9 999999999999999999998777644 5568999999999999999999999999999986432 022333366
Q ss_pred CCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCC-CCCCCe--EEEEEeeCCcEEEEEeC-CCcEEEEECC
Q 004924 568 PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD-KMDLPI--TYATYSCDGKCIYVSCK-SGHVKVFDTS 643 (723)
Q Consensus 568 ~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~-~h~~~v--~~l~~spdg~~l~sgs~-dg~I~iwd~~ 643 (723)
..|.+++|+|+|.+|+++.++.|++||+++++.+..+... .|...+ .+++|+|+|++|++++. |+.|++|++.
T Consensus 215 ---~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 215 ---AKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp ---SCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ---CCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEc
Confidence 7999999999999999976779999999988776554320 122333 46999999999999998 9999999997
Q ss_pred CCcEEEEeecccccCCCCccCccceEEEEEec--CCCCEEEEEECCCcEEEEecCCC
Q 004924 644 TLELRCQINLTAYAQPGTISLELYPLVIAAHP--LEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 644 ~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp--~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
++....... . +..++|+| .+...+++++.||.+.++-....
T Consensus 292 ~~~~~~~~~------------~--~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 292 KKTKNWTKD------------E--ESALCLQSDTADFTDMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp TTTCSEEEE------------E--EEECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred ccccceEec------------C--ceeEecCccccccceeEEEecCCceEEEEecCC
Confidence 765433321 1 22556655 24568888889999988865443
No 111
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=1.2e-28 Score=262.25 Aligned_cols=293 Identities=11% Similarity=0.125 Sum_probs=222.6
Q ss_pred CCcceeeccCCCC-CCceeeeCCCcccccccCCC---CCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEE
Q 004924 304 EGRPLDASSGDDS-NDSSCFNDNNQSRESTSLPD---ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVR 379 (723)
Q Consensus 304 ~~~~~~~~~~h~~-v~s~~~~~~~~~~~~~~spd---g~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~ 379 (723)
+..+++.+.+|.+ |.++. ++|+ |+++++++.||.|++|++.. .+......+.+ |...|.+
T Consensus 28 ~~~~~~~~~~h~~~v~~~~-----------~~~~~~~g~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~--h~~~v~~ 91 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLS-----------FSPPTLPGNFLIAGSWANDVRCWEVQD---SGQTIPKAQQM--HTGPVLD 91 (368)
T ss_dssp TTCCEECSSCCSSCEEEEE-----------ECCTTSSSEEEEEEETTSEEEEEEECT---TSCEEEEEEEE--CSSCEEE
T ss_pred CcceeEeccCCCCceEEEE-----------EcCCCCCceEEEEECCCCcEEEEEcCC---CCceeEEEecc--ccCCEEE
Confidence 3455666677776 55544 5556 69999999999999999985 23443233444 9999999
Q ss_pred EEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEE--e--CCEEEEE
Q 004924 380 LIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL--R--GSHLFSA 455 (723)
Q Consensus 380 l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~--s--~~~l~s~ 455 (723)
++|+|++++|++++.||.|++||+.+... .... +|...|.+++| + +.+++++
T Consensus 92 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~---------------------~~~~---~~~~~v~~~~~~~~~~~~~l~~~ 147 (368)
T 3mmy_A 92 VCWSDDGSKVFTASCDKTAKMWDLSSNQA---------------------IQIA---QHDAPVKTIHWIKAPNYSCVMTG 147 (368)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEE---------------------EEEE---ECSSCEEEEEEEECSSCEEEEEE
T ss_pred EEECcCCCEEEEEcCCCcEEEEEcCCCCc---------------------eeec---cccCceEEEEEEeCCCCCEEEEc
Confidence 99999999999999999999999874322 1111 48999999999 6 6789999
Q ss_pred e-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEE--cCcCCcEEEEEEcCCCC
Q 004924 456 S-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL--KGHQNRITCLAYSLSLN 532 (723)
Q Consensus 456 s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l--~~~~~~i~~l~~spdg~ 532 (723)
+ ||.|++||+.+++.+..+..+. .+.++.+.++ .+++++.++.+.+|+++........ ..+...+.++.+.+++.
T Consensus 148 ~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (368)
T 3mmy_A 148 SWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIYP-MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQ 225 (368)
T ss_dssp ETTSEEEEECSSCSSCSEEEECSS-CEEEEEEETT-EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTT
T ss_pred cCCCcEEEEECCCCcEEEEEecCC-CceEEEecCC-eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCC
Confidence 9 9999999999999988888765 4556666543 7888899999999999876544332 22445666666665554
Q ss_pred E----EEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCC---------CCCCeEEEEEccCCCEEEE-EcCCcEEEEEC
Q 004924 533 V----LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP---------ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEA 598 (723)
Q Consensus 533 ~----l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~---------~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~ 598 (723)
. +++++.||.|++||++..... ..+. ...+|.. ....|.+++|+|++++|++ +.||.|++||+
T Consensus 226 ~~~~~~~~~~~dg~i~i~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~ 302 (368)
T 3mmy_A 226 NKPTGFALGSIEGRVAIHYINPPNPA--KDNF-TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK 302 (368)
T ss_dssp SCEEEEEEEETTSEEEEEESSCSCHH--HHSE-EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred CCCCeEEEecCCCcEEEEecCCCCcc--ccce-eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEEC
Confidence 3 999999999999999885320 1112 1122220 0026999999999999998 58999999999
Q ss_pred CCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECC
Q 004924 599 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 599 ~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~ 643 (723)
.+++++..+. .|...|.+++|+|+|++|++|+.|+..+.|+..
T Consensus 303 ~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 303 DARTKLKTSE--QLDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp TTTEEEEECC--CCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred CCCcEEEEec--CCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 9999988876 468999999999999999999998865555543
No 112
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.8e-27 Score=256.57 Aligned_cols=316 Identities=11% Similarity=0.076 Sum_probs=234.4
Q ss_pred CEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEE-EEEECCCcEEEEeccCCccccccccee
Q 004924 338 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQSLEEENVN 416 (723)
Q Consensus 338 ~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~l-as~s~dg~i~iWd~~~~~~~~g~~~~~ 416 (723)
..+++++.|+.|++||+.+ +++... ++ +...+.+++|+|+|+++ ++++.|++|++||..+++.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~----~~~~~~-~~---~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-------- 66 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTS----NKVTAT-IP---VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-------- 66 (391)
T ss_dssp EEEEEETTTTEEEEEETTT----TEEEEE-EE---CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE--------
T ss_pred EEEEEcCCCCEEEEEECCC----CeEEEE-ee---cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE--------
Confidence 3578888999999999984 444433 33 33569999999999987 5666899999999764321
Q ss_pred eeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-e
Q 004924 417 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-L 491 (723)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~ 491 (723)
..... +...+.+++|+ ++++++++ ++.|++||+.+++.+..+..+ ..+.+++|+|++ .
T Consensus 67 -------------~~~~~---~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~ 129 (391)
T 1l0q_A 67 -------------IATVP---AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKK 129 (391)
T ss_dssp -------------EEEEE---CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSE
T ss_pred -------------EEEEE---CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCE
Confidence 11111 33489999999 77776555 699999999999988887754 468899999999 6
Q ss_pred E-EEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCC
Q 004924 492 F-AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 569 (723)
Q Consensus 492 l-~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l-~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~ 569 (723)
+ ++++.++.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+++++. ...+. .+
T Consensus 130 l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-----~~~~~-~~--- 199 (391)
T 1l0q_A 130 LYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV-----IDTVK-VE--- 199 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-----EEEEE-CS---
T ss_pred EEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE-----EEEEe-cC---
Confidence 6 68888999999999999998888765 456999999999887 5777899999999998643 22222 22
Q ss_pred CCCeEEEEEccCCCEEEE-E---cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEE-EEEeCCCcEEEEECCC
Q 004924 570 TTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCI-YVSCKSGHVKVFDTST 644 (723)
Q Consensus 570 ~~~v~~l~~spdg~~l~~-s---~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l-~sgs~dg~I~iwd~~~ 644 (723)
..+.+++|+|+++++++ + .++.|++||+.+++.+..+.. ...+.+++|+|++++| ++++.|+.|++||+.+
T Consensus 200 -~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 200 -AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV---GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp -SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC---CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred -CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec---CCCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 57899999999999887 3 578999999999998887764 3458899999999987 5678899999999999
Q ss_pred CcEEEEeecccccCC-C------CccCccceEEEEEecCC-----C--CEEEEEECCCcEEEEecCCCce
Q 004924 645 LELRCQINLTAYAQP-G------TISLELYPLVIAAHPLE-----P--NRIALGLTNGRVHVIEPLESEV 700 (723)
Q Consensus 645 ~~~~~~~~~~~~~~~-g------~~~~~v~~~~v~~sp~d-----~--~~las~s~Dg~v~iWd~~~~~~ 700 (723)
++.+..+..+..... + +......+....+++.. . -.+...+.|..+++|++.++..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 276 NTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp TEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred CcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 998888764321100 0 00000111112222111 1 3466677889999999987764
No 113
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.5e-28 Score=262.00 Aligned_cols=286 Identities=9% Similarity=0.013 Sum_probs=208.6
Q ss_pred CCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--C
Q 004924 372 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 449 (723)
Q Consensus 372 ~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~ 449 (723)
.|.+.|++++|+|||++|++|+.++ +++|+..+... ... .+...+..+++. +
T Consensus 17 ~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~---------------------~~~----~~~~~~~~~~~~~~~ 70 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH---------------------IMS----QEMRHLSKVRMLHRT 70 (355)
T ss_dssp --CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE---------------------EEE----EECSCCCEEEECTTS
T ss_pred cCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce---------------------eee----eecCCeEEEEEcCCC
Confidence 3999999999999999999888765 78999763211 000 011236666776 6
Q ss_pred CEEE-EEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCC-cEEEEEcCcCCcEEEEE
Q 004924 450 SHLF-SAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLA 526 (723)
Q Consensus 450 ~~l~-s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~-~~~~~l~~~~~~i~~l~ 526 (723)
+.++ +++ |++|++||+.+++.+..+. +...|.+++++++. ++++ .|+.|++||+.++ +.+..+.. +...++
T Consensus 71 ~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~-~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~ 144 (355)
T 3vu4_A 71 NYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF-IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCE 144 (355)
T ss_dssp SEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE-EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEE
T ss_pred CEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE-EEEE-EcCEEEEEECCCCceeeEEecc---CCceEE
Confidence 6664 455 7899999999999998887 56689999999875 3333 3789999999987 66555543 444566
Q ss_pred EcCCCCEEEE--EeCCCcEEEEeCCCCceee----------cee-eeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCc
Q 004924 527 YSLSLNVLVS--SGADAQLCVWDAVGWKKLC----------SKF-LHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ 592 (723)
Q Consensus 527 ~spdg~~l~s--~s~dg~I~vwd~~~~~~~~----------~~~-l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~ 592 (723)
+++ ..+++ |+.||.|++||+.++.... ..+ +. ...+|. ..|.+++|+|+|++|++ +.|++
T Consensus 145 ~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~-~~~~h~---~~v~~~~~s~~g~~l~s~s~d~~ 218 (355)
T 3vu4_A 145 FSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGV-LIKAHT---NPIKMVRLNRKSDMVATCSQDGT 218 (355)
T ss_dssp EET--TEEEEEESSCTTCEEEEECCC------------------CCE-EECCCS---SCEEEEEECTTSSEEEEEETTCS
T ss_pred EEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccE-EEEccC---CceEEEEECCCCCEEEEEeCCCC
Confidence 777 56665 5789999999999753110 011 33 345676 79999999999999999 58998
Q ss_pred -EEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEE--Eeecc---cc----------
Q 004924 593 -IDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC--QINLT---AY---------- 656 (723)
Q Consensus 593 -I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~--~~~~~---~~---------- 656 (723)
|++||+++++++..+....|...|.+++|+|+|++|++++.|++|++||+..+.... .+... .+
T Consensus 219 ~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (355)
T 3vu4_A 219 IIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNF 298 (355)
T ss_dssp EEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEE
T ss_pred EEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEE
Confidence 999999999999988743378999999999999999999999999999998654221 11100 00
Q ss_pred -cCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 657 -AQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 657 -~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
.+.+ .... ...++|+| +++++++++.||.+++|++..++
T Consensus 299 ~~~~~-~~~~--~~~~a~~~-d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 299 KLSVD-KHVR--GCKIAWIS-ESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp ECCCC-TTCC--CCEEEESS-SSEEEEEETTTTEEEEEEEEEET
T ss_pred EeccC-CCCC--ceEEEEeC-CCCEEEEEeCCCeEEEEEEEcCC
Confidence 0001 0111 23789999 89999999999999999987654
No 114
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=2.6e-28 Score=260.21 Aligned_cols=267 Identities=10% Similarity=0.091 Sum_probs=201.6
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEE-EEECCCcEEEEeccCCccccc
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQSLE 411 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~la-s~s~dg~i~iWd~~~~~~~~g 411 (723)
|+|||+++++|+.+ .+++|+... ....... +...+..+++++++++++ +++.|++|++||..++..
T Consensus 27 fs~dg~~la~g~~~-~~~iw~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~--- 93 (355)
T 3vu4_A 27 FNQDQSCLILSTLK-SFEIYNVHP----VAHIMSQ-----EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD--- 93 (355)
T ss_dssp ECTTSSEEEEECSS-EEEEEEETT----EEEEEEE-----ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE---
T ss_pred ECCCCCEEEEEcCC-EEEEEecCC----cceeeee-----ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE---
Confidence 78899999998866 478999873 3333221 233588899999998884 566789999999764322
Q ss_pred ccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEeCCcEEEEEcCCC-cEEEEEeCCCCCeEEEEEcCCC
Q 004924 412 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETF-QTLATFANPPPIATYFILLPQD 490 (723)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~sdg~I~vwd~~~~-~~~~~~~~~~~~v~~l~~~p~~ 490 (723)
+... .+...|.+++|+.+.++++.++.|++||+.++ +.+..+.. ....+++++ .
T Consensus 94 ------------------~~~~---~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-~ 148 (355)
T 3vu4_A 94 ------------------VSRI---KVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-G 148 (355)
T ss_dssp ------------------EEEE---ECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-T
T ss_pred ------------------EEEE---ECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc-c
Confidence 2211 26678999999977777778999999999988 66655554 344566777 5
Q ss_pred -eEEE-EECCCcEEEEeCCCCc----------------EEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCc-EEEEeCCCC
Q 004924 491 -LFAF-GFDDSSILVHCPCTKK----------------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ-LCVWDAVGW 551 (723)
Q Consensus 491 -~l~s-gs~dg~I~iwd~~~~~----------------~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~-I~vwd~~~~ 551 (723)
..++ |+.||.|++||+.+++ .+..+.+|...|++++|+|+|++|++|+.|++ |++||++++
T Consensus 149 ~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~ 228 (355)
T 3vu4_A 149 LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG 228 (355)
T ss_dssp EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC
T ss_pred EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 3333 7899999999999865 26788999999999999999999999999998 999999986
Q ss_pred ceeeceeeeeeecC-CCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCcee--EEe------------------c-
Q 004924 552 KKLCSKFLHSFQTG-LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHT--SQL------------------V- 608 (723)
Q Consensus 552 ~~~~~~~l~~~~~~-~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~--~~~------------------~- 608 (723)
+ .+.++..+ |. ..|.+++|+|+|++|++ +.|++|++||++.+... ..+ .
T Consensus 229 ~-----~~~~~~~g~h~---~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (355)
T 3vu4_A 229 V-----LVREFRRGLDR---ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKL 300 (355)
T ss_dssp C-----EEEEEECTTCC---SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEEC
T ss_pred c-----EEEEEEcCCCC---CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEe
Confidence 4 34445434 65 79999999999999998 58999999999765321 110 0
Q ss_pred CCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCC
Q 004924 609 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 645 (723)
Q Consensus 609 ~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~ 645 (723)
..........++|++|+++|++++.||.+++|++..+
T Consensus 301 ~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 301 SVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred ccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 0011223467899999999999999999999998654
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.1e-28 Score=287.09 Aligned_cols=248 Identities=13% Similarity=0.085 Sum_probs=206.6
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcC--CCcEEEEEeCCCCCeEEEEEcCC--C-eEEEEECCCcEEEEeCCC
Q 004924 437 DPKDSISCFALR--GSHLFSAS-GGKISIFSLE--TFQTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCT 508 (723)
Q Consensus 437 ~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~--~~~~~~~~~~~~~~v~~l~~~p~--~-~l~sgs~dg~I~iwd~~~ 508 (723)
+|.++|++++|+ ++++++|+ ||.|++||+. +++....+.+|...|++++|+|+ + .+++|+.||.|++||+.+
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~ 86 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 86 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence 799999999999 88999999 9999999998 56778888999999999999988 8 999999999999999999
Q ss_pred Cc--EEEEEcCcCCcEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEcc----
Q 004924 509 KK--TKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---- 580 (723)
Q Consensus 509 ~~--~~~~l~~~~~~i~~l~~spd--g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~sp---- 580 (723)
++ .+..+.+|...|.+++|+|+ +..+++|+.||.|++||++++...... ...+|. ..|.+++|+|
T Consensus 87 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~----~~~~~~---~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI----IIDAHA---IGVNSASWAPATIE 159 (753)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE----EEECCS---SCEEEEEECCCC--
T ss_pred CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee----EeecCC---CceEEEEecCcccc
Confidence 87 77788899999999999999 999999999999999999886332211 233455 7899999999
Q ss_pred ---------CCCEEEE-EcCCcEEEEECCCCc----eeEEecCCCCCCCeEEEEEeeC---CcEEEEEeCCCcEEEEECC
Q 004924 581 ---------DQIHLLS-IHEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCD---GKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 581 ---------dg~~l~~-s~dg~I~vwd~~~~~----~~~~~~~~~h~~~v~~l~~spd---g~~l~sgs~dg~I~iwd~~ 643 (723)
++..+++ +.||.|++||++++. ....+. .|...|.+++|+|+ +.++++|+.||.|++||+.
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec--CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 5788888 589999999998773 334443 57899999999999 9999999999999999999
Q ss_pred CCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 644 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 644 ~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
+++........ .. ..+...++ +++|+| ++.++++++.||.|++|++.++.
T Consensus 238 ~~~~~~~~~~~--~~-~~~~~~v~--~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 238 NEQGPWKKTLL--KE-EKFPDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSSSCCBCCBS--SS-SCCSSCCC--CEEECT-TTCCEEEECSSSCEECCBCCSSS
T ss_pred CCCCcceeEEe--cc-CCCCCceE--EEEEcC-CCCEEEEEcCCCEEEEEecCCCC
Confidence 87532111110 01 11344455 999999 89999999999999999998654
No 116
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.9e-27 Score=262.06 Aligned_cols=246 Identities=12% Similarity=0.060 Sum_probs=192.2
Q ss_pred CCCceEEEEEeCCCCEE-EEEECCCcEEEEecc--CCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-
Q 004924 373 FGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQ--SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 448 (723)
Q Consensus 373 h~~~V~~l~fspdg~~l-as~s~dg~i~iWd~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s- 448 (723)
|.+.|++++|+|+|++| ++|+.||+|++|++. ++.. +..+....|...|.+++|+
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~---------------------~~~~~~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV---------------------LKLRKRFCFSKRPNAISIAE 159 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC---------------------EEEEEEEECSSCEEEEEECT
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce---------------------eeeeecccCCCCceEEEEcC
Confidence 56689999999999996 888899999999986 3222 1111001377899999999
Q ss_pred -CCEEEEEe-CCcEEEEEcCCCcEEE----EEeCCCCCeEEEEEcCC---C-eEEEEECCCcEEEEeCCCCcEEEE-EcC
Q 004924 449 -GSHLFSAS-GGKISIFSLETFQTLA----TFANPPPIATYFILLPQ---D-LFAFGFDDSSILVHCPCTKKTKAK-LKG 517 (723)
Q Consensus 449 -~~~l~s~s-dg~I~vwd~~~~~~~~----~~~~~~~~v~~l~~~p~---~-~l~sgs~dg~I~iwd~~~~~~~~~-l~~ 517 (723)
+.+|++|+ +|.|++|++.+++... .+.+|...|++++|+|+ + .|++|+.|+.|++||+.+++.+.. +.+
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 239 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG 239 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC
Confidence 88999999 9999999998877554 67789999999999999 8 999999999999999999998877 568
Q ss_pred cCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeec-----CC-----------CCCCCCeEEEEEccC
Q 004924 518 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT-----GL-----------VPETTIVNHIQFHPD 581 (723)
Q Consensus 518 ~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~-----~~-----------~~~~~~v~~l~~spd 581 (723)
|...|.+++|+ ++++|++++.|+.|++||+.+++............ .| ......|.+++|+|+
T Consensus 240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 318 (450)
T 2vdu_B 240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN 318 (450)
T ss_dssp CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence 99999999999 99999999999999999999976543322110000 00 001157899999999
Q ss_pred CCEEEE-E-cCCcEEEEEC--CCC---ceeEEecCCCCCCCeEEEEEeeCCcEEEEEeC------CCcEEEEECC
Q 004924 582 QIHLLS-I-HEGQIDVYEA--PTL---NHTSQLVPDKMDLPITYATYSCDGKCIYVSCK------SGHVKVFDTS 643 (723)
Q Consensus 582 g~~l~~-s-~dg~I~vwd~--~~~---~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~------dg~I~iwd~~ 643 (723)
++++++ + .++.|++||+ .++ +.+..+.. + ..|.+++|+|++.++++++. +..|.+|.+.
T Consensus 319 ~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~--~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 319 LPFVAFFVEATKCIIILEMSEKQKGDLALKQIITF--P-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp SSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC--S-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred CCEEEEEECCCCeEEEEEeccCCCCceeeccEecc--C-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 999998 4 7899999999 555 55566653 3 78999999996544444443 4557888654
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=1.7e-27 Score=260.81 Aligned_cols=250 Identities=14% Similarity=0.182 Sum_probs=200.1
Q ss_pred CCCceEEEEEeCC-CCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--C
Q 004924 373 FGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 449 (723)
Q Consensus 373 h~~~V~~l~fspd-g~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~ 449 (723)
|.+.|++++|+|+ +.+||+++.||.|++|++.......... ........+. +|...|.+++|+ +
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~-----------~~~~~~~~~~--~h~~~v~~l~~~~~~ 193 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPS-----------GECQPDLRLR--GHQKEGYGLSWNPNL 193 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTT-----------CCCCCSEEEE--CCSSCCCCEEECTTS
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCcc-----------ccCCCcEEec--CCCCCeEEEEeCCCC
Confidence 9999999999997 7899999999999999987532100000 0001111111 699999999999 5
Q ss_pred C-EEEEEe-CCcEEEEEcCCCcE-------EEEEeCCCCCeEEEEEcCC-C-eEEEEECCCcEEEEeCCCC---cEEEEE
Q 004924 450 S-HLFSAS-GGKISIFSLETFQT-------LATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTK---KTKAKL 515 (723)
Q Consensus 450 ~-~l~s~s-dg~I~vwd~~~~~~-------~~~~~~~~~~v~~l~~~p~-~-~l~sgs~dg~I~iwd~~~~---~~~~~l 515 (723)
. +|++|+ ||.|++|++.++.. ...+.+|...|.+++|+|+ + .|++++.||.|++||++++ +.+..+
T Consensus 194 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~ 273 (430)
T 2xyi_A 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV 273 (430)
T ss_dssp TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE
T ss_pred CCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe
Confidence 5 899999 99999999987322 4566789999999999995 5 9999999999999999987 577788
Q ss_pred cCcCCcEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCC-EEEE-EcCCc
Q 004924 516 KGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQ 592 (723)
Q Consensus 516 ~~~~~~i~~l~~spdg~-~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~-~l~~-s~dg~ 592 (723)
..|...|++++|+|++. .+++|+.||.|++||+++.. .++. ...+|. ..|.+++|+|++. ++++ +.|+.
T Consensus 274 ~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~----~~~~-~~~~h~---~~v~~i~~sp~~~~~l~s~~~d~~ 345 (430)
T 2xyi_A 274 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK----LKLH-SFESHK---DEIFQVQWSPHNETILASSGTDRR 345 (430)
T ss_dssp ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT----SCSE-EEECCS---SCEEEEEECSSCTTEEEEEETTSC
T ss_pred ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC----CCeE-EeecCC---CCEEEEEECCCCCCEEEEEeCCCc
Confidence 89999999999999987 68999999999999998742 2333 233455 7999999999995 5666 58999
Q ss_pred EEEEECCCC--------------ceeEEecCCCCCCCeEEEEEeeCCc-EEEEEeCCCcEEEEECCCC
Q 004924 593 IDVYEAPTL--------------NHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTL 645 (723)
Q Consensus 593 I~vwd~~~~--------------~~~~~~~~~~h~~~v~~l~~spdg~-~l~sgs~dg~I~iwd~~~~ 645 (723)
|++||+... +.+..+. +|...|.+++|+|+++ ++++++.||.|++|++..+
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHG--GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECC--CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcC--CCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 999999762 3444443 5788999999999999 8999999999999998764
No 118
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.6e-28 Score=286.27 Aligned_cols=248 Identities=15% Similarity=0.170 Sum_probs=205.8
Q ss_pred CCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---
Q 004924 372 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 448 (723)
Q Consensus 372 ~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--- 448 (723)
+|.+.|++++|+|+|++|++|+.||+|++|++.+.. +....... +|.++|.+++|+
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-------------------~~~~~~l~--~h~~~V~~l~~s~~~ 65 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-------------------HKLIDTLT--GHEGPVWRVDWAHPK 65 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-------------------EEEEEEEC--CCSSCEEEEEECCTT
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-------------------Cccceecc--CCcCceEEEEecCCC
Confidence 499999999999999999999999999999976311 11111111 699999999997
Q ss_pred -CCEEEEEe-CCcEEEEEcCCCc--EEEEEeCCCCCeEEEEEcCC--C-eEEEEECCCcEEEEeCCCC--cEEEEEcCcC
Q 004924 449 -GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTK--KTKAKLKGHQ 519 (723)
Q Consensus 449 -~~~l~s~s-dg~I~vwd~~~~~--~~~~~~~~~~~v~~l~~~p~--~-~l~sgs~dg~I~iwd~~~~--~~~~~l~~~~ 519 (723)
++++++|+ ||.|++||+.+++ ....+.+|...|++++|+|+ + .+++|+.||.|++||++++ .....+.+|.
T Consensus 66 ~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~ 145 (753)
T 3jro_A 66 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA 145 (753)
T ss_dssp SCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCC
Confidence 67899999 9999999999887 67778899999999999999 8 9999999999999999887 3445677899
Q ss_pred CcEEEEEEcC-------------CCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccC---CC
Q 004924 520 NRITCLAYSL-------------SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---QI 583 (723)
Q Consensus 520 ~~i~~l~~sp-------------dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spd---g~ 583 (723)
..|.++.|+| ++..+++|+.||.|++||++++.... .... ...+|. ..|.+++|+|+ +.
T Consensus 146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~-~~~~-~~~~h~---~~V~~l~~sp~~~~~~ 220 (753)
T 3jro_A 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-VLES-TLEGHS---DWVRDVAWSPTVLLRS 220 (753)
T ss_dssp SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEE-EEEE-EECCCS---SCEEEEEECCCCSSSE
T ss_pred CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccc-eeee-eecCCC---CcEEEEEeccCCCCCC
Confidence 9999999999 58999999999999999998753221 2222 344566 79999999999 88
Q ss_pred EEEE-EcCCcEEEEECCCCcee---EEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCC
Q 004924 584 HLLS-IHEGQIDVYEAPTLNHT---SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 645 (723)
Q Consensus 584 ~l~~-s~dg~I~vwd~~~~~~~---~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~ 645 (723)
++++ +.||.|++||+.+++.. .......|...|++++|+|+|+++++|+.||.|++|++.++
T Consensus 221 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 221 YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp EEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred EEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9998 58999999999886421 11222346889999999999999999999999999999853
No 119
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=1.5e-27 Score=261.29 Aligned_cols=243 Identities=15% Similarity=0.160 Sum_probs=199.6
Q ss_pred CCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCC----------CcEEEEEeCCCCCeEEEEEcCCC--eEEEEECCCc
Q 004924 437 DPKDSISCFALR---GSHLFSAS-GGKISIFSLET----------FQTLATFANPPPIATYFILLPQD--LFAFGFDDSS 500 (723)
Q Consensus 437 ~h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~~----------~~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~ 500 (723)
.|.+.|++++|+ +.++++++ +|.|++|++.+ ......+.+|...|++++|+|++ .|++|+.||.
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 589999999999 35788888 99999999986 57788889999999999999998 8999999999
Q ss_pred EEEEeCCCCcE-------EEEEcCcCCcEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCC
Q 004924 501 ILVHCPCTKKT-------KAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI 572 (723)
Q Consensus 501 I~iwd~~~~~~-------~~~l~~~~~~i~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~ 572 (723)
|++||+.++.. ...+.+|...|.+++|+| ++..+++++.||.|++||++++.. ...+.. ...|. ..
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~--~~~~~~-~~~~~---~~ 279 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT--SKPSHT-VDAHT---AE 279 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS--SSCSEE-EECCS---SC
T ss_pred EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC--CcceeE-eecCC---CC
Confidence 99999987422 456778999999999999 678999999999999999997521 122332 23555 78
Q ss_pred eEEEEEccCCC-EEEE-EcCCcEEEEECCC-CceeEEecCCCCCCCeEEEEEeeCCc-EEEEEeCCCcEEEEECCCC---
Q 004924 573 VNHIQFHPDQI-HLLS-IHEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTL--- 645 (723)
Q Consensus 573 v~~l~~spdg~-~l~~-s~dg~I~vwd~~~-~~~~~~~~~~~h~~~v~~l~~spdg~-~l~sgs~dg~I~iwd~~~~--- 645 (723)
|.+++|+|++. ++++ +.||.|++||+++ +.++..+. .|...|.+++|+|+++ +|++++.||.|++||+...
T Consensus 280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~--~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE--SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE--CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee--cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 99999999997 5666 5899999999997 45666665 4689999999999995 6899999999999999872
Q ss_pred -----------cEEEEeecccccCCCCccCccceEEEEEecCCCC-EEEEEECCCcEEEEecCCC
Q 004924 646 -----------ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 646 -----------~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~-~las~s~Dg~v~iWd~~~~ 698 (723)
+++..+. + |...++ +++|+| ++. ++++++.||.|+||++..+
T Consensus 358 ~~~~~~~~~~~~~~~~~~-------~-h~~~v~--~~~~~p-~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHG-------G-HTAKIS--DFSWNP-NEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCHHHHHHCCTTEEEECC-------C-CSSCEE--EEEECS-SSTTEEEEEETTSEEEEEEECHH
T ss_pred cCccccccCCcceEEEcC-------C-CCCCce--EEEECC-CCCCEEEEEECCCCEEEeEcccc
Confidence 3333332 2 233444 999999 677 9999999999999999764
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1.4e-27 Score=258.34 Aligned_cols=305 Identities=9% Similarity=0.011 Sum_probs=197.1
Q ss_pred CCceEEEEE---eCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeee------ccCCCCCCCeEE
Q 004924 374 GGRVVRLIY---SHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN------DIAADPKDSISC 444 (723)
Q Consensus 374 ~~~V~~l~f---spdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~h~~~V~~ 444 (723)
.....++.| +|++..+++++.|+.|.+|+...................|.......... .....|...+..
T Consensus 15 ~~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (393)
T 4gq1_A 15 NVRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNV 94 (393)
T ss_dssp TCCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC--------
T ss_pred CCCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcce
Confidence 345566777 45555567777789999998754332111111111112222211110000 000124444444
Q ss_pred EEEe--CCEEEEEe-CCcEEEEEcCCCcEEE-----EEeCCCCCeEEEEEcC--------CC-eEEEEECCCcEEEEeCC
Q 004924 445 FALR--GSHLFSAS-GGKISIFSLETFQTLA-----TFANPPPIATYFILLP--------QD-LFAFGFDDSSILVHCPC 507 (723)
Q Consensus 445 v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~-----~~~~~~~~v~~l~~~p--------~~-~l~sgs~dg~I~iwd~~ 507 (723)
..++ +.++++++ |++|++||..+++... .+.+|.+.|++++|+| ++ .||+|+.|++|++||+.
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence 4444 67899999 9999999999886543 3468999999999998 77 99999999999999999
Q ss_pred CCcEEEEEcCcCCcEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeeceee-------------------eeeecCCC
Q 004924 508 TKKTKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFL-------------------HSFQTGLV 567 (723)
Q Consensus 508 ~~~~~~~l~~~~~~i~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~~~~l-------------------~~~~~~~~ 567 (723)
++.++..+.+|...|.+++|+|++ .+|++++.|++|++||++++.......- .....+|.
T Consensus 175 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 254 (393)
T 4gq1_A 175 DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIA 254 (393)
T ss_dssp TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCS
T ss_pred CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccc
Confidence 988888888899999999999987 4799999999999999988643211100 00112344
Q ss_pred CCCCCeEEEEEc-cCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCe------------------EEEEEee--CC
Q 004924 568 PETTIVNHIQFH-PDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPI------------------TYATYSC--DG 625 (723)
Q Consensus 568 ~~~~~v~~l~~s-pdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v------------------~~l~~sp--dg 625 (723)
..+.++.|+ |+++.+++ +.|+++++||+.+++....+.. |...+ ....|+| ++
T Consensus 255 ---~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (393)
T 4gq1_A 255 ---SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD--STMKLGPKNLLPNVQGISLFPSLLGACPHPRYMD 329 (393)
T ss_dssp ---SSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------------CCSCSEEEECSSCCSSCCEECSSCTT
T ss_pred ---ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee--ecCccccEEEccccccccccCcceeEEEccCCCC
Confidence 678899987 79999998 5899999999987765544432 12222 2233443 45
Q ss_pred cEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEec
Q 004924 626 KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 695 (723)
Q Consensus 626 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~ 695 (723)
.++++|+.||.|++||..+++.......+ ...|. +++||| +|++||++++|| +.+|.+
T Consensus 330 ~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~--------~~~V~--svafsp-dG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 330 YFATAHSQHGLIQLINTYEKDSNSIPIQL--------GMPIV--DFCWHQ-DGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp EEEEEETTTTEEEEEETTCTTCCEEEEEC--------SSCEE--EEEECT-TSSEEEEEESSE-EEEEEE
T ss_pred EEEEEECCCCEEEEEECCCCcEEEEecCC--------CCcEE--EEEEcC-CCCEEEEEeCCC-eEEEEE
Confidence 57788999999999999999877766432 33455 999999 999999998776 666665
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=4e-26 Score=246.04 Aligned_cols=267 Identities=16% Similarity=0.142 Sum_probs=212.7
Q ss_pred CEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEE-EEEe-CCcEEE
Q 004924 387 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL-FSAS-GGKISI 462 (723)
Q Consensus 387 ~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l-~s~s-dg~I~v 462 (723)
..+++++.|+.|++||..++.. +.... +...+.+++|+ ++++ ++++ |+.|++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~---------------------~~~~~---~~~~~~~~~~s~dg~~l~~~~~~d~~i~v 58 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKV---------------------TATIP---VGSNPMGAVISPDGTKVYVANAHSNDVSI 58 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEE---------------------EEEEE---CSSSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeE---------------------EEEee---cCCCcceEEECCCCCEEEEECCCCCeEEE
Confidence 3577888899999999764322 11111 33458999999 7766 5665 899999
Q ss_pred EEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEE-EEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEE-EEEeC
Q 004924 463 FSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGA 539 (723)
Q Consensus 463 wd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~-sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l-~s~s~ 539 (723)
||+.+++.+..+..+. .+.+++|+|++ .++ +++.++.|++||+.+++.+..+..+ ..+.+++|+|+|+.+ ++++.
T Consensus 59 ~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~ 136 (391)
T 1l0q_A 59 IDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNG 136 (391)
T ss_dssp EETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETT
T ss_pred EECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCC
Confidence 9999999998887665 89999999999 665 5556799999999999988888754 568999999999977 67888
Q ss_pred CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E-cCCcEEEEECCCCceeEEecCCCCCCCeE
Q 004924 540 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPIT 617 (723)
Q Consensus 540 dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~ 617 (723)
|+.|++||+.+++. +..+.. + ..+.+++|+|+++++++ + .++.|++||+++++....+. +...+.
T Consensus 137 ~~~v~~~d~~~~~~-----~~~~~~-~----~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~~~~~~ 203 (391)
T 1l0q_A 137 DKTVSVINTVTKAV-----INTVSV-G----RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK---VEAAPS 203 (391)
T ss_dssp TTEEEEEETTTTEE-----EEEEEC-C----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---CSSEEE
T ss_pred CCEEEEEECCCCcE-----EEEEec-C----CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe---cCCCcc
Confidence 99999999998643 232222 2 46799999999998854 4 77899999999998877774 356789
Q ss_pred EEEEeeCCcEEEEEe---CCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEE-EEEECCCcEEEE
Q 004924 618 YATYSCDGKCIYVSC---KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI-ALGLTNGRVHVI 693 (723)
Q Consensus 618 ~l~~spdg~~l~sgs---~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~l-as~s~Dg~v~iW 693 (723)
+++|+|+++++++++ .++.|++||+.+++.+..+..+ . . +.+++|+| +++++ ++++.|+.|++|
T Consensus 204 ~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--------~-~--~~~~~~s~-dg~~l~~s~~~d~~v~v~ 271 (391)
T 1l0q_A 204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG--------P-D--PAGIAVTP-DGKKVYVALSFXNTVSVI 271 (391)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC--------S-S--EEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred ceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC--------C-C--ccEEEEcc-CCCEEEEEcCCCCEEEEE
Confidence 999999999999888 6899999999999888777531 2 2 45899999 78776 677889999999
Q ss_pred ecCCCceeeec
Q 004924 694 EPLESEVEWGK 704 (723)
Q Consensus 694 d~~~~~~~w~~ 704 (723)
|+.+++.....
T Consensus 272 d~~~~~~~~~~ 282 (391)
T 1l0q_A 272 DTATNTITATM 282 (391)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCCcEEEEE
Confidence 99998765433
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=6.1e-26 Score=248.14 Aligned_cols=271 Identities=13% Similarity=0.045 Sum_probs=216.6
Q ss_pred ccccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEE----ecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccC
Q 004924 330 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTL----LLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS 405 (723)
Q Consensus 330 ~~~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~----~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~ 405 (723)
...++|++.++++++.++.|++||+.+ +..... .+. +|...|++++|+|+|+++++++.|+.|++||..+
T Consensus 127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~----g~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 127 SVRFIDNTRLAIPLLEDEGMDVLDINS----GQTVRLSPPEKYK--KKLGFVETISIPEHNELWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp CCEESSSSEEEEEBTTSSSEEEEETTT----CCEEEECCCHHHH--TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT
T ss_pred EEEEeCCCeEEEEeCCCCeEEEEECCC----CeEeeecCccccc--ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC
Confidence 445888778888888889999999984 444332 122 4889999999999999999999999999999764
Q ss_pred CcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEE-EEe-CCcEEEEEcCCCcEEEEEeCCCCCe
Q 004924 406 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF-SAS-GGKISIFSLETFQTLATFANPPPIA 481 (723)
Q Consensus 406 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~-s~s-dg~I~vwd~~~~~~~~~~~~~~~~v 481 (723)
+.. ..... .|...+.+++|+ ++.++ +++ ++.|++||+.+++.+..+..+ ..+
T Consensus 201 ~~~---------------------~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~ 256 (433)
T 3bws_A 201 LAY---------------------KATVD--LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLP 256 (433)
T ss_dssp CCE---------------------EEEEE--CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEE
T ss_pred ceE---------------------EEEEc--CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCc
Confidence 221 11111 478899999999 67764 554 899999999999888877654 458
Q ss_pred EEEEEcCCC-eEEEEE--------CCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCC
Q 004924 482 TYFILLPQD-LFAFGF--------DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGADAQLCVWDAVGW 551 (723)
Q Consensus 482 ~~l~~~p~~-~l~sgs--------~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l-~s~s~dg~I~vwd~~~~ 551 (723)
.+++|+|++ .+++++ .||.|++||+.+++.+..+. |...+.+++|+|+++.+ ++++.|+.|++||+.++
T Consensus 257 ~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~ 335 (433)
T 3bws_A 257 RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK 335 (433)
T ss_dssp EEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT
T ss_pred eEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC
Confidence 999999999 888887 58899999999998777663 56689999999999754 66689999999999986
Q ss_pred ceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-c---------------CCcEEEEECCCCceeEEecCCCCCCC
Q 004924 552 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H---------------EGQIDVYEAPTLNHTSQLVPDKMDLP 615 (723)
Q Consensus 552 ~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~---------------dg~I~vwd~~~~~~~~~~~~~~h~~~ 615 (723)
+. +..+. +. ..+.+++|+|+|++++++ . ||.|++||+.+++.+..+.. ...
T Consensus 336 ~~-----~~~~~--~~---~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---~~~ 402 (433)
T 3bws_A 336 KV-----QKSIP--VF---DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA---GNQ 402 (433)
T ss_dssp EE-----EEEEE--CS---SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC---SSS
T ss_pred cE-----EEEec--CC---CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC---CCC
Confidence 43 23232 22 679999999999988874 3 46999999999998888754 567
Q ss_pred eEEEEEeeCCcEEEEEeC-CCcEEEEECCC
Q 004924 616 ITYATYSCDGKCIYVSCK-SGHVKVFDTST 644 (723)
Q Consensus 616 v~~l~~spdg~~l~sgs~-dg~I~iwd~~~ 644 (723)
+.+++|+|+|++|++++. |+.|++|++..
T Consensus 403 ~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 403 PTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 999999999999998875 99999999864
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=5.3e-27 Score=253.71 Aligned_cols=282 Identities=10% Similarity=0.052 Sum_probs=191.5
Q ss_pred CCCCCEEEEEeCCCeEEEEeecccCCCC----ceeEEecCCCCCCCceEEE--------------------EEeCCCCEE
Q 004924 334 LPDADSAVCAKSLEKSVNLKLQLINEPS----ECRTLLLPDNSFGGRVVRL--------------------IYSHSGDFL 389 (723)
Q Consensus 334 spdg~~la~~s~dg~v~iw~~~~~~~~~----~~~~~~l~~~~h~~~V~~l--------------------~fspdg~~l 389 (723)
+|++..++.++.++.|.+|+........ ........ .|...+..+ .+++++.+|
T Consensus 27 ~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (393)
T 4gq1_A 27 SPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTI--QTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFL 104 (393)
T ss_dssp SGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEE--ECSSCEEEEEECTTCEEECC----------CCEEEEEE
T ss_pred CCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEE--ecCCCeeeEeecCCccccccccCCCcceeecCCCCCEE
Confidence 4555556666678999999875321111 11111010 133334443 444566789
Q ss_pred EEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe----------CCEEEEEe-CC
Q 004924 390 VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----------GSHLFSAS-GG 458 (723)
Q Consensus 390 as~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s----------~~~l~s~s-dg 458 (723)
++++.|++|+|||...+.. .. ...+. ...+|.+.|.+++|+ +++||+|+ |+
T Consensus 105 as~~~d~~v~lw~~~~~~~-----~~-----------~~~~~--~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 105 ACVCQDNTVRLIITKNETI-----IT-----------QHVLG--GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp EEEETTSCEEEEEEETTEE-----EE-----------EEEEC--TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred EEEeCCCcEEEEECCCCcc-----ce-----------eeeec--ccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 9999999999999875322 00 00111 112799999999995 46899999 99
Q ss_pred cEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEEEE----------------------
Q 004924 459 KISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAK---------------------- 514 (723)
Q Consensus 459 ~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~~---------------------- 514 (723)
+|++||+.++.....+..|...+.+++|+|++ +|++|+.||+|++||+++++....
T Consensus 167 tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 167 TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 99999999988888888999999999999988 799999999999999988764432
Q ss_pred ---EcCcCCcEEEEEEc-CCCCEEEEEeCCCcEEEEeCCCCceeeceeeee-------------eecCCCCCCCCeEEEE
Q 004924 515 ---LKGHQNRITCLAYS-LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-------------FQTGLVPETTIVNHIQ 577 (723)
Q Consensus 515 ---l~~~~~~i~~l~~s-pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~-------------~~~~~~~~~~~v~~l~ 577 (723)
..+|...+.++.|+ |+|+.+++++.|+++++||+..+.......... ....+ .......
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 322 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF----PSLLGAC 322 (393)
T ss_dssp -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS----CCSSCCE
T ss_pred eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc----CcceeEE
Confidence 23577788899986 799999999999999999998754321110000 00001 1222334
Q ss_pred Ecc-CCC-EEEEE-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEEC
Q 004924 578 FHP-DQI-HLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 642 (723)
Q Consensus 578 ~sp-dg~-~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~ 642 (723)
++| .+. +++++ .||.|++||+.+++...... .|..+|.+++|+|||++||+++.+| +.+|.+
T Consensus 323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~--~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 323 PHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI--QLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp ECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE--ECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred EccCCCCEEEEEECCCCEEEEEECCCCcEEEEec--CCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 444 334 44455 78999999999998877665 3578999999999999999998776 555554
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.8e-27 Score=248.37 Aligned_cols=236 Identities=12% Similarity=0.087 Sum_probs=189.3
Q ss_pred CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCC---------CCcEEEEEc-C
Q 004924 449 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPC---------TKKTKAKLK-G 517 (723)
Q Consensus 449 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~---------~~~~~~~l~-~ 517 (723)
+..+++|+ ||+|++||+.+++.+..+. ...|.++.|+|+ +++|+.|++|++|+.. +++.+..+. +
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 123 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD 123 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred CCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC
Confidence 67899999 9999999999999888876 355667788887 8999999999999655 555555554 6
Q ss_pred cCCcEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEE
Q 004924 518 HQNRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQID 594 (723)
Q Consensus 518 ~~~~i~~l~~sp--dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~ 594 (723)
|...|.+++|+| +++++++++.||+|++||+++++. +......+. ..+.+++|+|+|.++++ +.||.|+
T Consensus 124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----~~~~~~~~~---~~i~~~~~~pdg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-----YIVHSAKSD---VEYSSGVLHKDSLLLALYSPDGILD 195 (343)
T ss_dssp CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-----EEEECCCSS---CCCCEEEECTTSCEEEEECTTSCEE
T ss_pred CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-----EEEEecCCC---CceEEEEECCCCCEEEEEcCCCEEE
Confidence 778999999999 999999999999999999998643 221223333 57999999999999999 4999999
Q ss_pred EEECCCCcee-EEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEE
Q 004924 595 VYEAPTLNHT-SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 673 (723)
Q Consensus 595 vwd~~~~~~~-~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~ 673 (723)
+||+++++.. ..+.. .|...|.+++|+|+|.+|++++ |+.|++||+++++....+.... + +...+...+++|
T Consensus 196 iwd~~~~~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~----~-~~~~~~~~~~~~ 268 (343)
T 3lrv_A 196 VYNLSSPDQASSRFPV-DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYT----I-PEFKTGTVTYDI 268 (343)
T ss_dssp EEESSCTTSCCEECCC-CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCB----C------CCEEEEE
T ss_pred EEECCCCCCCccEEec-cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccc----c-ccccccceEEEE
Confidence 9999999887 66654 4789999999999999999999 5599999999987665544211 0 111222236999
Q ss_pred ecCCCCEEEEEEC-CCcEEEEecCCCceeeec
Q 004924 674 HPLEPNRIALGLT-NGRVHVIEPLESEVEWGK 704 (723)
Q Consensus 674 sp~d~~~las~s~-Dg~v~iWd~~~~~~~w~~ 704 (723)
+| ++++|++++. |+.|+||++..+...|..
T Consensus 269 ~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 269 DD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK 299 (343)
T ss_dssp CT-TSSEEEEEETTTTEEEEEEECTTTCSEEE
T ss_pred CC-CCCEEEEecCCCCcEEEEEEcccccceEe
Confidence 99 8999999998 999999999888777775
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=1.8e-25 Score=251.10 Aligned_cols=329 Identities=10% Similarity=0.042 Sum_probs=241.8
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEec--cCCcccc
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW--QSNKQSL 410 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~--~~~~~~~ 410 (723)
++|++..+++++.+++|.+||..+ +++... ++. +|. +.+++|||||++|++++.|++|++||+ .+
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t----~~~~~~-i~~-g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t----- 211 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDS----KKIVKV-IDT-GYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKE----- 211 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTT----CCEEEE-EEC-STT--EEEEEECTTSCEEEEEETTSEEEEEETTSSS-----
T ss_pred cCCCCEEEEEEcCCCeEEEEECCC----ceEEEE-Eec-Ccc--cceEEECCCCCEEEEECCCCeEEEEECcCCC-----
Confidence 778899999999999999999874 444433 332 133 899999999999999999999999997 32
Q ss_pred cccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe------CCEEEEEe--CCcEEEEEcCCCcEEEEEeCC-----
Q 004924 411 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSAS--GGKISIFSLETFQTLATFANP----- 477 (723)
Q Consensus 411 g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s------~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~----- 477 (723)
+.++..+. +...+..++|+ |+++++++ +++|.+||..++++++.+..+
T Consensus 212 ----------------~~~~~~i~---~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~ 272 (543)
T 1nir_A 212 ----------------PTKVAEIK---IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVD 272 (543)
T ss_dssp ----------------CEEEEEEE---CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSS
T ss_pred ----------------CcEEEEEe---cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccC
Confidence 12222211 34457788886 56888877 799999999999999888642
Q ss_pred ------CCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEEE--EEcCcCCcEEEEEEcCCCCEEEEEe-CCCcEEEE
Q 004924 478 ------PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA--KLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVW 546 (723)
Q Consensus 478 ------~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~--~l~~~~~~i~~l~~spdg~~l~s~s-~dg~I~vw 546 (723)
...+.++.++|++ .+++...++.|.+||..+++.+. .+. +...+.++.|+|+|+++++++ .+++|.+|
T Consensus 273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~ 351 (543)
T 1nir_A 273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVI 351 (543)
T ss_dssp SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEE
T ss_pred ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEE
Confidence 2378899999988 67778889999999998865443 343 556788899999999876655 58999999
Q ss_pred eCCCCceeeceeeeeeecCCCCCCCCeEEEEEccC-CCEEEEE--cCCcEEEEECCC-------CceeEEecCCCCCCCe
Q 004924 547 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSI--HEGQIDVYEAPT-------LNHTSQLVPDKMDLPI 616 (723)
Q Consensus 547 d~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spd-g~~l~~s--~dg~I~vwd~~~-------~~~~~~~~~~~h~~~v 616 (723)
|..+++........ ...|. +....+ ++|+ +..++++ .|++|.+||+.+ +++++++.. |...+
T Consensus 352 D~~tg~l~~~i~~g--~~ph~---g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~--~g~~~ 423 (543)
T 1nir_A 352 DSKDRRLSALVDVG--KTPHP---GRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG--QGGGS 423 (543)
T ss_dssp ETTTTEEEEEEECS--SSBCC---TTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC--SCSCC
T ss_pred ECCCCeEEEeeccC--CCCCC---CCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc--CCCCc
Confidence 99997543322111 11132 233333 5787 5555565 478999999998 888888875 46777
Q ss_pred EEEEEeeCCcEEEEEe-------CCCcEEEEECCCCcEE-EEeecccccCCCCccCccceEEEEEecCCCCEEEEEE---
Q 004924 617 TYATYSCDGKCIYVSC-------KSGHVKVFDTSTLELR-CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL--- 685 (723)
Q Consensus 617 ~~l~~spdg~~l~sgs-------~dg~I~iwd~~~~~~~-~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s--- 685 (723)
..++++|+|++|++++ .+++|.+||+.+++.. ..+...... |-..+.-.+..+.|+| +|+.+.++.
T Consensus 424 ~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~-~g~~~~~s~~~~ 500 (543)
T 1nir_A 424 LFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWA--DLGEGAKRVVQPEYNK-RGDEVWFSVWNG 500 (543)
T ss_dssp CCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHH--CCCSSCCEEEEEEECS-SSSEEEEEEECC
T ss_pred eEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhc--ccCCCCCceEeccCCC-CCCEEEEEeecC
Confidence 8899999999999987 2789999999999876 444221100 0001123455999999 888877653
Q ss_pred --CCCcEEEEecCCCceeeecC
Q 004924 686 --TNGRVHVIEPLESEVEWGKL 705 (723)
Q Consensus 686 --~Dg~v~iWd~~~~~~~w~~~ 705 (723)
.|+.|.|||..+++.+-...
T Consensus 501 ~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 501 KNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp TTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCCCeEEEEECCCceEEEeec
Confidence 47999999999998775554
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=9.5e-26 Score=231.32 Aligned_cols=236 Identities=11% Similarity=0.082 Sum_probs=175.5
Q ss_pred eEEEEEe--CC---EEEEEeCCcEEEEEcCCC---cEEEEEeCCCC-------------------------CeEEEEEcC
Q 004924 442 ISCFALR--GS---HLFSASGGKISIFSLETF---QTLATFANPPP-------------------------IATYFILLP 488 (723)
Q Consensus 442 V~~v~~s--~~---~l~s~sdg~I~vwd~~~~---~~~~~~~~~~~-------------------------~v~~l~~~p 488 (723)
+.++-|- +. .+++++...|++|+..++ +.+.++..|.. .|.+++++|
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~sp 121 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSS 121 (356)
T ss_dssp EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC--
T ss_pred EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECC
Confidence 4556565 22 577788999999999988 77888777654 456777777
Q ss_pred C----C-eEEEEEC--------------------CCcEEEEeC-CCCcEEEEEcCcCCcEEEEEEcC---CCCEEEEEeC
Q 004924 489 Q----D-LFAFGFD--------------------DSSILVHCP-CTKKTKAKLKGHQNRITCLAYSL---SLNVLVSSGA 539 (723)
Q Consensus 489 ~----~-~l~sgs~--------------------dg~I~iwd~-~~~~~~~~l~~~~~~i~~l~~sp---dg~~l~s~s~ 539 (723)
+ + .+++++. |+.|++|++ .+|+.+..+.+|...++.++|+| ++..|++++.
T Consensus 122 d~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~ 201 (356)
T 2w18_A 122 DDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTI 201 (356)
T ss_dssp ----CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEET
T ss_pred CccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecC
Confidence 8 6 6666553 778888887 44777777778888888888888 6788999999
Q ss_pred CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEE------------E-EcCCcEEEEECCCCceeEE
Q 004924 540 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL------------S-IHEGQIDVYEAPTLNHTSQ 606 (723)
Q Consensus 540 dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~------------~-s~dg~I~vwd~~~~~~~~~ 606 (723)
|++|++||+++|+. +.++..++. ....+.+++|+|+|.+++ + +.|++|++||..+++.+..
T Consensus 202 D~TIkIWDl~TGk~-----l~tL~g~~~-~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v 275 (356)
T 2w18_A 202 MNNIVIWNLKTGQL-----LKKMHIDDS-YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGV 275 (356)
T ss_dssp TSEEEEEETTTCCE-----EEEEECCC----CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEE
T ss_pred CCcEEEEECCCCcE-----EEEEcCCCc-ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEE
Confidence 99999999999743 443433321 114688889999998874 3 3678999999999988765
Q ss_pred ec---CCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEE
Q 004924 607 LV---PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 683 (723)
Q Consensus 607 ~~---~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las 683 (723)
+. +.+|...+.+..+ ++.++++|+.||+|+|||+.+++++.++.. |+...+. .++|+| |+++|++
T Consensus 276 ~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~g-------H~~~vvs--~vafSP-DG~~LaS 343 (356)
T 2w18_A 276 MLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPP-------VSDQHWS--FVKWSG-TDSHLLA 343 (356)
T ss_dssp EEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECC-------C--CCCC--EEEECS-SSSEEEE
T ss_pred EEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecC-------CCCCeEE--EEEECC-CCCEEEE
Confidence 52 2345555554444 488999999999999999999999999863 3333333 689999 8999999
Q ss_pred EECCCcEEEEec
Q 004924 684 GLTNGRVHVIEP 695 (723)
Q Consensus 684 ~s~Dg~v~iWd~ 695 (723)
|+.|++|+|||+
T Consensus 344 GS~D~TIklWd~ 355 (356)
T 2w18_A 344 GQKDGNIFVYHY 355 (356)
T ss_dssp ECTTSCEEEEEE
T ss_pred EECCCcEEEecC
Confidence 999999999996
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=2e-26 Score=236.33 Aligned_cols=186 Identities=13% Similarity=0.076 Sum_probs=146.7
Q ss_pred CCEEEEEe---CCcEEEEEc-CCCcEEEEEeCCCCCeEEEEEcC---CC-eEEEEECCCcEEEEeCCCCcEEEEEcCcC-
Q 004924 449 GSHLFSAS---GGKISIFSL-ETFQTLATFANPPPIATYFILLP---QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ- 519 (723)
Q Consensus 449 ~~~l~s~s---dg~I~vwd~-~~~~~~~~~~~~~~~v~~l~~~p---~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~- 519 (723)
++.+.+++ |+.|++|++ .+|+.+..+..|...++.++|+| ++ .|++|+.|++|+|||+.+|++++++.+|.
T Consensus 145 g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~ 224 (356)
T 2w18_A 145 RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS 224 (356)
T ss_dssp TEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-
T ss_pred CcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc
Confidence 55555543 899999999 55888899999999999999999 66 99999999999999999999999998754
Q ss_pred --CcEEEEEEcCCCCEE------------EEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEE
Q 004924 520 --NRITCLAYSLSLNVL------------VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 585 (723)
Q Consensus 520 --~~i~~l~~spdg~~l------------~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l 585 (723)
..+.+++|+|+|..+ ++|+.|++|++||..++.......+. ++.+|. ..+.+..++ +..+
T Consensus 225 ~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~-~p~Gh~---~~~lsg~~s--g~~l 298 (356)
T 2w18_A 225 YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC-LPPGQA---GRFLEGDVK--DHCA 298 (356)
T ss_dssp --CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEEC-CCTTCC---CCEEEEEEE--TTEE
T ss_pred ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee-ccCCCc---ceeEccccC--CCEE
Confidence 467788999999876 56788999999999997544322222 245665 344444443 7788
Q ss_pred EE-EcCCcEEEEECCCCceeEEecCCCCCCC-eEEEEEeeCCcEEEEEeCCCcEEEEEC
Q 004924 586 LS-IHEGQIDVYEAPTLNHTSQLVPDKMDLP-ITYATYSCDGKCIYVSCKSGHVKVFDT 642 (723)
Q Consensus 586 ~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~-v~~l~~spdg~~l~sgs~dg~I~iwd~ 642 (723)
++ +.|++|+|||+.+++++.++.+ |... +..++|||||++|++|+.|++|+|||+
T Consensus 299 ASgS~DgTIkIWDl~tGk~l~tL~g--H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 299 AAILTSGTIAIWDLLLGQCTALLPP--VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEETTSCEEEEETTTCSEEEEECC--C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEecC--CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 88 4899999999999999999864 4554 446899999999999999999999995
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=8.5e-24 Score=230.09 Aligned_cols=287 Identities=11% Similarity=-0.013 Sum_probs=212.6
Q ss_pred cCCCCC-EEEEEe----CCC----eEEEEee--cccCCCCceeEEecCCCCCCCceEEEEEeC--------------CCC
Q 004924 333 SLPDAD-SAVCAK----SLE----KSVNLKL--QLINEPSECRTLLLPDNSFGGRVVRLIYSH--------------SGD 387 (723)
Q Consensus 333 ~spdg~-~la~~s----~dg----~v~iw~~--~~~~~~~~~~~~~l~~~~h~~~V~~l~fsp--------------dg~ 387 (723)
+++.|. .+++++ .+| ++++||+ .+ ...+....+.+ |...+..+++++ .+.
T Consensus 70 w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~~g~~~~~~~ 144 (415)
T 2hqs_A 70 WSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAP---GTVLAQNSYKV--NKQWLRYAGHTASDEVFEKLTGIKGAFRT 144 (415)
T ss_dssp HHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSST---TCEEEEEEEEE--CGGGHHHHHHHHHHHHHHHHHSSCCCTTC
T ss_pred HHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCC---CCEEeeeEEEc--ChhHHHHHHHHHHHHHHHHHcCCCCcCCC
Confidence 666665 455665 467 8999999 64 22332333444 888888888775 266
Q ss_pred EEEEEECC------CcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CC
Q 004924 388 FLVALTQT------ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GG 458 (723)
Q Consensus 388 ~las~s~d------g~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg 458 (723)
.++.++.+ ++|++||...... . .+. +|...|.+++|+ |++|++++ ++
T Consensus 145 ~l~~~s~~~~~~~~~~i~i~d~~g~~~------~-------------~l~-----~~~~~v~~~~~Spdg~~la~~s~~~ 200 (415)
T 2hqs_A 145 RIAYVVQTNGGQFPYELRVSDYDGYNQ------F-------------VVH-----RSPQPLMSPAWSPDGSKLAYVTFES 200 (415)
T ss_dssp EEEEEEECSSSSCCEEEEEEETTSCSC------E-------------EEE-----EESSCEEEEEECTTSSEEEEEECTT
T ss_pred EEEEEEecCCCCccceEEEEcCCCCCC------E-------------EEe-----CCCCcceeeEEcCCCCEEEEEEecC
Confidence 77777764 7899998753211 1 111 478899999999 88999988 64
Q ss_pred ---cEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEE-EEECCCc--EEEEeCCCCcEEEEEcCcCCcEEEEEEcCCC
Q 004924 459 ---KISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSS--ILVHCPCTKKTKAKLKGHQNRITCLAYSLSL 531 (723)
Q Consensus 459 ---~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~-sgs~dg~--I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg 531 (723)
.|++||+.+++.. .+..+...+.+++|+||| .|+ +++.++. |++||+.+++. ..+..|...+.+++|+|||
T Consensus 201 ~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg 278 (415)
T 2hqs_A 201 GRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDS 278 (415)
T ss_dssp SSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTS
T ss_pred CCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCC
Confidence 8999999998875 566778889999999999 777 6666654 99999998876 5677788899999999999
Q ss_pred CEEEEEeC-CC--cEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcC---CcEEEEECCCCcee
Q 004924 532 NVLVSSGA-DA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE---GQIDVYEAPTLNHT 604 (723)
Q Consensus 532 ~~l~s~s~-dg--~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~d---g~I~vwd~~~~~~~ 604 (723)
+.|++++. ++ .|++||+.+++. ..+. .+. ..+.+++|+|+|++|++ +.+ ..|++||+.+++..
T Consensus 279 ~~l~~~s~~~g~~~i~~~d~~~~~~------~~l~-~~~---~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~ 348 (415)
T 2hqs_A 279 QNLAFTSDQAGRPQVYKVNINGGAP------QRIT-WEG---SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ 348 (415)
T ss_dssp SEEEEEECTTSSCEEEEEETTSSCC------EECC-CSS---SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE
T ss_pred CEEEEEECCCCCcEEEEEECCCCCE------EEEe-cCC---CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE
Confidence 99998886 44 678889887532 1111 222 57889999999999997 433 58999999988763
Q ss_pred EEecCCCCCCCeEEEEEeeCCcEEEEEeCCC---cEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEec
Q 004924 605 SQLVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 675 (723)
Q Consensus 605 ~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp 675 (723)
.+.. + ..+.+++|+|||++|++++.++ .|++||+..+. ...+.. +.+.+. +++|+|
T Consensus 349 -~l~~--~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l~~--------~~~~v~--~~~~~~ 407 (415)
T 2hqs_A 349 -VLSS--T-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPA--------TDGQVK--FPAWSP 407 (415)
T ss_dssp -ECCC--S-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECCC--------SSSEEE--EEEECC
T ss_pred -EecC--C-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc-EEEeeC--------CCCCCc--CCcccc
Confidence 3432 2 3899999999999999988877 79999998544 455542 234455 999999
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=2.1e-23 Score=244.51 Aligned_cols=320 Identities=11% Similarity=0.075 Sum_probs=226.2
Q ss_pred cccCCCCCEEEEEeC-CC-----eEEEEeecccCCCCceeEEecCCCCCC----------------------CceEEEEE
Q 004924 331 STSLPDADSAVCAKS-LE-----KSVNLKLQLINEPSECRTLLLPDNSFG----------------------GRVVRLIY 382 (723)
Q Consensus 331 ~~~spdg~~la~~s~-dg-----~v~iw~~~~~~~~~~~~~~~l~~~~h~----------------------~~V~~l~f 382 (723)
..+||||+++++++. |+ .|.+|++.+ +....+ +....+. ..|.+++|
T Consensus 42 ~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~----g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 42 PKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS----GQTRLL-VDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp EEECTTSSEEEEEECCSSCTTEEEEEEEETTT----CCEEEE-ECGGGTC--------------------CCEESCCCEE
T ss_pred ceEecCCCEEEEEeccCCCCcccEEEEEECCC----CceeEc-cchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 349999999999998 88 899999984 444433 2210122 34889999
Q ss_pred eCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEeCCcE
Q 004924 383 SHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKI 460 (723)
Q Consensus 383 spdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~sdg~I 460 (723)
||||++|++++. +.|.+||+.++.. .... . + ..|...+.+++|+ |++|+.++++.|
T Consensus 117 SpDg~~l~~~~~-~~i~~~d~~~~~~---~~~~---------------~-l--~~~~~~~~~~~~SPDG~~la~~~~~~i 174 (741)
T 2ecf_A 117 SPDAQRLLFPLG-GELYLYDLKQEGK---AAVR---------------Q-L--THGEGFATDAKLSPKGGFVSFIRGRNL 174 (741)
T ss_dssp CTTSSEEEEEET-TEEEEEESSSCST---TSCC---------------B-C--CCSSSCEEEEEECTTSSEEEEEETTEE
T ss_pred CCCCCEEEEEeC-CcEEEEECCCCCc---ceEE---------------E-c--ccCCcccccccCCCCCCEEEEEeCCcE
Confidence 999999999987 8999999874310 0000 0 0 1467789999999 889999998899
Q ss_pred EEEEcCCCcEEEEEeCCCCC----------------eEEEEEcCCC-eEEEEECCC------------------------
Q 004924 461 SIFSLETFQTLATFANPPPI----------------ATYFILLPQD-LFAFGFDDS------------------------ 499 (723)
Q Consensus 461 ~vwd~~~~~~~~~~~~~~~~----------------v~~l~~~p~~-~l~sgs~dg------------------------ 499 (723)
.+||+.+++.......+... +.+++|+||| .|++++.|+
T Consensus 175 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~ 254 (741)
T 2ecf_A 175 WVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP 254 (741)
T ss_dssp EEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred EEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence 99999988776554443332 3679999999 888887665
Q ss_pred ---------cEEEEeCCC-CcEEEEEc--CcCCcEEEEEEcCCCCEEEEEeC-----CCcEEEEeCCCCceeeceeeeee
Q 004924 500 ---------SILVHCPCT-KKTKAKLK--GHQNRITCLAYSLSLNVLVSSGA-----DAQLCVWDAVGWKKLCSKFLHSF 562 (723)
Q Consensus 500 ---------~I~iwd~~~-~~~~~~l~--~~~~~i~~l~~spdg~~l~s~s~-----dg~I~vwd~~~~~~~~~~~l~~~ 562 (723)
.|++||+.+ ++...... .|...+..++| |||+.|++++. +..|++||+.+++... +
T Consensus 255 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~------~ 327 (741)
T 2ecf_A 255 AAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRV------L 327 (741)
T ss_dssp BTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEE------E
T ss_pred CCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEE------E
Confidence 789999998 87655443 37788999999 99999987764 5679999999875322 1
Q ss_pred ecCCCC-CCCCeEEEEEccCCCEEEEE-cCCcEEEEECC-CCceeEEecCCCCCCCeEEE-EEeeCCcEEEE-EeCCC--
Q 004924 563 QTGLVP-ETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP-TLNHTSQLVPDKMDLPITYA-TYSCDGKCIYV-SCKSG-- 635 (723)
Q Consensus 563 ~~~~~~-~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~-~~~~~~~~~~~~h~~~v~~l-~~spdg~~l~s-gs~dg-- 635 (723)
...+.. ....+.+++|+|||++++++ .++.++||.+. ++. ...+.. +...+..+ .|+|+|+.|+. ++.++
T Consensus 328 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~--~~~~v~~~~~~s~dg~~l~~~~~~~~~~ 404 (741)
T 2ecf_A 328 AHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTH--GNWSVDELLAVDEKAGLAYFRAGIESAR 404 (741)
T ss_dssp EEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCC--SSSCEEEEEEEETTTTEEEEEECSSCTT
T ss_pred EEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeee--cceEEEeEeEEeCCCCEEEEEEeCCCCc
Confidence 111110 00135688999999977775 67777777654 344 555543 46778787 59999997765 44455
Q ss_pred cEEEEECCC-CcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECC----CcEEEEecCCCc
Q 004924 636 HVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN----GRVHVIEPLESE 699 (723)
Q Consensus 636 ~I~iwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D----g~v~iWd~~~~~ 699 (723)
.+++|++.. +.....+.. ...+. .++|+| ++++|+....+ +.+.+|+...+.
T Consensus 405 ~~~l~~~~~~g~~~~~l~~---------~~~~~--~~~~sp-dg~~l~~~~~~~~~p~~~~l~~~~~~~ 461 (741)
T 2ecf_A 405 ESQIYAVPLQGGQPQRLSK---------APGMH--SASFAR-NASVYVDSWSNNSTPPQIELFRANGEK 461 (741)
T ss_dssp CBEEEEEETTCCCCEECCC---------SCSEE--EEEECT-TSSEEEEEEEETTEEEEEEEEETTSCE
T ss_pred eEEEEEEEcCCCCeeeccc---------CCCce--EEEECC-CCCEEEEEecCCCCCCeEEEEEcCCCe
Confidence 899999864 544455432 22344 899999 88887765443 468899875543
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=1.3e-23 Score=228.57 Aligned_cols=277 Identities=12% Similarity=0.057 Sum_probs=203.1
Q ss_pred CCCceEEEEEeCCCC-EEEEEE----CCC----cEEEEec--cCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCC
Q 004924 373 FGGRVVRLIYSHSGD-FLVALT----QTA----THKLWKW--QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS 441 (723)
Q Consensus 373 h~~~V~~l~fspdg~-~las~s----~dg----~i~iWd~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 441 (723)
+...+....|++.|. ++++|+ .|| ++++||+ .++.. .... .+. +|...
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~-----~~~~---~~~-------------~~~~~ 119 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTV-----LAQN---SYK-------------VNKQW 119 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCE-----EEEE---EEE-------------ECGGG
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCE-----Eeee---EEE-------------cChhH
Confidence 345788889999885 555776 467 8999998 54322 1100 011 23333
Q ss_pred eEEEEEe----------------CCEEEEEe-C------CcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEEC
Q 004924 442 ISCFALR----------------GSHLFSAS-G------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD 497 (723)
Q Consensus 442 V~~v~~s----------------~~~l~s~s-d------g~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~ 497 (723)
+..++++ +..++.++ + +.|++||+. +...+.+.+|...+.+++|+|+| .|++++.
T Consensus 120 ~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~ 198 (415)
T 2hqs_A 120 LRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTF 198 (415)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEe
Confidence 3333222 44555555 4 699999997 45567777888999999999999 9999998
Q ss_pred CC---cEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEE-EEeCCCc--EEEEeCCCCceeeceeeeeeecCCCCCCC
Q 004924 498 DS---SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETT 571 (723)
Q Consensus 498 dg---~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~-s~s~dg~--I~vwd~~~~~~~~~~~l~~~~~~~~~~~~ 571 (723)
++ .|++||+.+++.. .+..|...+.+++|+|||+.|+ +++.++. |++||+.+++. ..+ ..|. .
T Consensus 199 ~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~------~~l-~~~~---~ 267 (415)
T 2hqs_A 199 ESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI------RQV-TDGR---S 267 (415)
T ss_dssp TTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE------EEC-CCCS---S
T ss_pred cCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE------EeC-cCCC---C
Confidence 75 9999999998875 5667888999999999999887 6666655 99999988532 212 2333 6
Q ss_pred CeEEEEEccCCCEEEE-Ec-CC--cEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC---CcEEEEECCC
Q 004924 572 IVNHIQFHPDQIHLLS-IH-EG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTST 644 (723)
Q Consensus 572 ~v~~l~~spdg~~l~~-s~-dg--~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d---g~I~iwd~~~ 644 (723)
.+.+++|+|||++|++ +. ++ .|++||+.+++.. .+. .+...+.+++|+|||++|++++.+ +.|++||+.+
T Consensus 268 ~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~--~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~ 344 (415)
T 2hqs_A 268 NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RIT--WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT 344 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECC--CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred cccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEe--cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC
Confidence 7999999999999887 43 34 6888899887643 332 246678899999999999988764 5899999999
Q ss_pred CcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCC---cEEEEecCCC
Q 004924 645 LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG---RVHVIEPLES 698 (723)
Q Consensus 645 ~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg---~v~iWd~~~~ 698 (723)
++.. .+.. + . .+.+++|+| ++++|++++.|+ .|++||+..+
T Consensus 345 ~~~~-~l~~-------~-~---~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 345 GGVQ-VLSS-------T-F---LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp CCEE-ECCC-------S-S---SCEEEEECT-TSSEEEEEEEETTEEEEEEEETTSC
T ss_pred CCEE-EecC-------C-C---CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECCCC
Confidence 8763 3321 1 1 244999999 899999988877 7999998744
No 131
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=9.7e-23 Score=247.84 Aligned_cols=330 Identities=13% Similarity=0.069 Sum_probs=236.3
Q ss_pred ccccCCCCCEEEEEeCC----C--eEEEEeecccCCCCceeEEecCCCCCCCce-------EEEEEeCCCCEEEEEECC-
Q 004924 330 ESTSLPDADSAVCAKSL----E--KSVNLKLQLINEPSECRTLLLPDNSFGGRV-------VRLIYSHSGDFLVALTQT- 395 (723)
Q Consensus 330 ~~~~spdg~~la~~s~d----g--~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V-------~~l~fspdg~~las~s~d- 395 (723)
...+||||++||+++.+ + .|.+|++.+ +.... +.. |...+ ..++|||||+.+++++.+
T Consensus 57 ~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~----g~~~~--lt~--~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~ 128 (1045)
T 1k32_A 57 NARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN----GEIKR--ITY--FSGKSTGRRMFTDVAGFDPDGNLIISTDAMQ 128 (1045)
T ss_dssp EEEECTTSSEEEEEEEESTTCCEEEEEEEETTT----TEEEE--CCC--CCEEEETTEECSEEEEECTTCCEEEEECTTS
T ss_pred CeEECCCCCEEEEEEeeccCCCCCeEEEEECCC----CCeEE--ccc--CCCcccccccccccccCCCCCEEEEEECCcC
Confidence 34589999999998754 3 688999873 44443 333 77777 999999999977777654
Q ss_pred -----CcEEEEeccCCcc---ccccc-ce------------------------eeeeEEEec-CCCeeeeeccCCCCCCC
Q 004924 396 -----ATHKLWKWQSNKQ---SLEEE-NV------------------------NMESQLYQP-SSKLVMTNDIAADPKDS 441 (723)
Q Consensus 396 -----g~i~iWd~~~~~~---~~g~~-~~------------------------~~~~~~~~~-~~~~~~~~~~~~~h~~~ 441 (723)
..|.+|+..++.. ..+.. .. .....+|.. ..+..... .+|...
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l---~~~~~~ 205 (1045)
T 1k32_A 129 PFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI---VDMSTH 205 (1045)
T ss_dssp SSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE---ECCSSC
T ss_pred CCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC---cCCCCc
Confidence 3577777665432 01100 00 001233321 12333222 269999
Q ss_pred eEEEEEe-CCEEEEEe-CCcEEEEEcCC-CcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcC
Q 004924 442 ISCFALR-GSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG 517 (723)
Q Consensus 442 V~~v~~s-~~~l~s~s-dg~I~vwd~~~-~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~ 517 (723)
+.++.|+ +.++++++ ++++.+|.+.. +.....+..+. .+...+|+|+| .++++. ++.|++||+..++ +..+.+
T Consensus 206 v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~ 282 (1045)
T 1k32_A 206 VSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEI 282 (1045)
T ss_dssp CEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCC
T ss_pred ccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeecc
Confidence 9999999 54445556 78999998753 44455555554 35677999999 888874 8999999995443 445554
Q ss_pred -----------cCCcEEEEEEc-CCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCC-CeEEEEEccCCCE
Q 004924 518 -----------HQNRITCLAYS-LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT-IVNHIQFHPDQIH 584 (723)
Q Consensus 518 -----------~~~~i~~l~~s-pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~-~v~~l~~spdg~~ 584 (723)
|...+.+++|+ |||+.+++++ ++.|.+|++.++... . + ..+. . .+..++|+ ||+.
T Consensus 283 ~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-----~-~-~~~~---~~~~~~~~~s-dg~~ 350 (1045)
T 1k32_A 283 GDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-----K-V-PEPL---RIRYVRRGGD-TKVA 350 (1045)
T ss_dssp CCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-----E-C-SCCS---CEEEEEECSS-SEEE
T ss_pred CcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-----E-c-cCCC---cceEEeeeEc-CCCe
Confidence 34468899999 9999999888 889999999875321 1 2 2232 4 78999999 9998
Q ss_pred EEE-EcCCcEE-EEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCc
Q 004924 585 LLS-IHEGQID-VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI 662 (723)
Q Consensus 585 l~~-s~dg~I~-vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~ 662 (723)
++. +.++.+. +||+.+++.. .+. .|...+..++|||||++|++++.++.|++||+.+++....... +
T Consensus 351 l~~~s~~~~l~~~~d~~~~~~~-~l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~--------~ 419 (1045)
T 1k32_A 351 FIHGTREGDFLGIYDYRTGKAE-KFE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS--------R 419 (1045)
T ss_dssp EEEEETTEEEEEEEETTTCCEE-ECC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--------S
T ss_pred EEEEECCCceEEEEECCCCCce-Eec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC--------C
Confidence 887 4667788 8899877653 333 4578899999999999999999999999999999987766542 2
Q ss_pred cCccceEEEEEecCCCCEEEEEECCC----------cEEEEecCCCc
Q 004924 663 SLELYPLVIAAHPLEPNRIALGLTNG----------RVHVIEPLESE 699 (723)
Q Consensus 663 ~~~v~~~~v~~sp~d~~~las~s~Dg----------~v~iWd~~~~~ 699 (723)
...+. +++|+| ||++|++++.++ .|++||+.+++
T Consensus 420 ~~~v~--~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 420 EAMIT--DFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp SSCCC--CEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred CCCcc--ceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 33445 899999 899999887654 99999998875
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=7.3e-22 Score=207.89 Aligned_cols=279 Identities=13% Similarity=0.141 Sum_probs=190.6
Q ss_pred EEEEE-eCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECC-CcEEEEeccCCccccccccee
Q 004924 339 SAVCA-KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT-ATHKLWKWQSNKQSLEEENVN 416 (723)
Q Consensus 339 ~la~~-s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~d-g~i~iWd~~~~~~~~g~~~~~ 416 (723)
+++++ +.++.|.+|++.. .+......... |...+.+++|+|+|++|++++.+ +.|.+|++.... +..
T Consensus 6 ~l~~~~~~~~~v~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~---~~~--- 74 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNH---EGALTLTQVVD--VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD---GAL--- 74 (343)
T ss_dssp EEEEEEGGGTEEEEEEECT---TSCEEEEEEEE--CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT---CCE---
T ss_pred EEEEeCCCCCeEEEEEECC---CCcEEEeeeEe--cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC---Cce---
Confidence 34444 7799999999964 23322221111 67789999999999999999886 999999976210 000
Q ss_pred eeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEEcC---CCcEEEEEeCCCCCeEEEEEcCC
Q 004924 417 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLE---TFQTLATFANPPPIATYFILLPQ 489 (723)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s--dg~I~vwd~~---~~~~~~~~~~~~~~v~~l~~~p~ 489 (723)
..+.... ....+.+++|+ ++++++++ ++.|.+||+. +++....+..+ ..+.+++|+|+
T Consensus 75 -----------~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~d 139 (343)
T 1ri6_A 75 -----------TFAAESA---LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPD 139 (343)
T ss_dssp -----------EEEEEEE---CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTT
T ss_pred -----------eeccccc---cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCC
Confidence 0011111 12367889999 77776666 7889999994 34444554433 45788999999
Q ss_pred C-eEEEEE-CCCcEEEEeCCC-CcEEE----EEcC-cCCcEEEEEEcCCCCEEEEEe-CCCcEEEEeCCC--Cceeecee
Q 004924 490 D-LFAFGF-DDSSILVHCPCT-KKTKA----KLKG-HQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVG--WKKLCSKF 558 (723)
Q Consensus 490 ~-~l~sgs-~dg~I~iwd~~~-~~~~~----~l~~-~~~~i~~l~~spdg~~l~s~s-~dg~I~vwd~~~--~~~~~~~~ 558 (723)
+ .+++++ .++.|.+||+.+ ++... .+.. ....+.+++|+|+|+++++++ .++.|.+||+.. +.......
T Consensus 140 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~ 219 (343)
T 1ri6_A 140 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQT 219 (343)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEE
T ss_pred CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEee
Confidence 9 777777 899999999987 65432 2232 345788999999999776555 789999999953 43222222
Q ss_pred eeeeecCCCCCCCCeEEEEEccCCCEEEE-E-cCCcEEEEECC--CC--ceeEEecCCCCCCCeEEEEEeeCCcEEEEEe
Q 004924 559 LHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAP--TL--NHTSQLVPDKMDLPITYATYSCDGKCIYVSC 632 (723)
Q Consensus 559 l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~dg~I~vwd~~--~~--~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs 632 (723)
+..+..++. ....+..++|+|+|+++++ + .++.|.+||+. ++ +.+..+.. ...+..++|+|+|++|++++
T Consensus 220 ~~~~~~~~~-~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~ 295 (343)
T 1ri6_A 220 LDMMPENFS-DTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT---ETQPRGFNVDHSGKYLIAAG 295 (343)
T ss_dssp EECSCTTCC-SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC---SSSCCCEEECTTSSEEEEEC
T ss_pred ccccCcccc-ccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC---CCccceEEECCCCCEEEEec
Confidence 222222211 0145778999999998886 4 68899999998 33 34444432 23388999999999988887
Q ss_pred -CCCcEEEE--ECCCCcE
Q 004924 633 -KSGHVKVF--DTSTLEL 647 (723)
Q Consensus 633 -~dg~I~iw--d~~~~~~ 647 (723)
.++.|.+| |..+++.
T Consensus 296 ~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 296 QKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp TTTCEEEEEEEETTTTEE
T ss_pred CCCCeEEEEEEcCCCcee
Confidence 57999999 5556654
No 133
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=1.4e-22 Score=236.72 Aligned_cols=321 Identities=13% Similarity=0.070 Sum_probs=216.9
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCC---ceEEEEEeCCCCEEEEEECC---------CcEE
Q 004924 332 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG---RVVRLIYSHSGDFLVALTQT---------ATHK 399 (723)
Q Consensus 332 ~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~---~V~~l~fspdg~~las~s~d---------g~i~ 399 (723)
.|+|||+++++ +.||+|++|++.+ +.+... +.+ |.. .|.+++|||||++|++++.+ +.+.
T Consensus 23 ~~spdg~~~~~-~~dg~i~~~d~~~----g~~~~~-~~~--~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 23 KWISDTEFIYR-EQKGTVRLWNVET----NTSTVL-IEG--KKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CBSSSSCBCCC-CSSSCEEEBCGGG----CCCEEE-ECT--TTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred EEcCCCcEEEE-eCCCCEEEEECCC----CcEEEE-ecc--ccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence 39999997776 7899999999984 444444 333 443 49999999999999999875 5666
Q ss_pred EEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEeCCcEEEEEcCCCcEEEEEeCC
Q 004924 400 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANP 477 (723)
Q Consensus 400 iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~sdg~I~vwd~~~~~~~~~~~~~ 477 (723)
+||+.++ .........+|...+.+++|+ |+.|+.++++.|++||+.+++..+....+
T Consensus 95 ~~d~~~~---------------------~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~ 153 (723)
T 1xfd_A 95 LSKIPHG---------------------DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTG 153 (723)
T ss_dssp EEESSSC---------------------CCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCC
T ss_pred EEECCCC---------------------ceEeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCC
Confidence 7776542 221111111455668889999 88999999999999999998877666554
Q ss_pred CCCe------------------EEEEEcCCC-eEEEEECCC----------------------------------cEEEE
Q 004924 478 PPIA------------------TYFILLPQD-LFAFGFDDS----------------------------------SILVH 504 (723)
Q Consensus 478 ~~~v------------------~~l~~~p~~-~l~sgs~dg----------------------------------~I~iw 504 (723)
...+ .+++|+||| .|++++.|+ .|++|
T Consensus 154 ~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~ 233 (723)
T 1xfd_A 154 KEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVI 233 (723)
T ss_dssp BTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEE
T ss_pred CCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEE
Confidence 4333 789999999 888877543 79999
Q ss_pred eCCCCcEEEEEcCc------CCcEEEEEEcCCCCEEEEEeC----CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCe-
Q 004924 505 CPCTKKTKAKLKGH------QNRITCLAYSLSLNVLVSSGA----DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV- 573 (723)
Q Consensus 505 d~~~~~~~~~l~~~------~~~i~~l~~spdg~~l~s~s~----dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v- 573 (723)
|+.+++....+..+ ...+..++|+|||+++++.+. +..|++||+.+++.... +...+. ..+
T Consensus 234 d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~-----~~~~~~---~~~~ 305 (723)
T 1xfd_A 234 GLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK-----HEDESE---AWLH 305 (723)
T ss_dssp ESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE-----EEEECS---SCCC
T ss_pred ECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEE-----EEeccC---CEEe
Confidence 99988865666654 678899999999998877653 35799999998643211 111121 223
Q ss_pred ---EEEEEccCCCEEEE--E-cCC------cEEEEE-CCCCce--eEEecCCCCCCCeEE-EEEeeCCcEEEEEeCC---
Q 004924 574 ---NHIQFHPDQIHLLS--I-HEG------QIDVYE-APTLNH--TSQLVPDKMDLPITY-ATYSCDGKCIYVSCKS--- 634 (723)
Q Consensus 574 ---~~l~~spdg~~l~~--s-~dg------~I~vwd-~~~~~~--~~~~~~~~h~~~v~~-l~~spdg~~l~sgs~d--- 634 (723)
..++|+|||+.|+. + .++ .|++|| ..++.. ...+.. +...+.. ++|+|||+.|+..+.+
T Consensus 306 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~--~~~~~~~~~~~spdg~~l~~~~~~~~~ 383 (723)
T 1xfd_A 306 RQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS--GDWDVTKILAYDEKGNKIYFLSTEDLP 383 (723)
T ss_dssp CCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC--SSSCEEEEEEEETTTTEEEEEESSSCT
T ss_pred ccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec--CCeEEEeeeEEcCCCCEEEEEEcCCCC
Confidence 37899999997764 3 555 577788 444441 344432 2344554 6999999999866655
Q ss_pred CcEEEEECCCCc--EEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEEC-CC--cEEEEecCCCc
Q 004924 635 GHVKVFDTSTLE--LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT-NG--RVHVIEPLESE 699 (723)
Q Consensus 635 g~I~iwd~~~~~--~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~-Dg--~v~iWd~~~~~ 699 (723)
+.+++|++.... ....+... . + +...+. .++|+| ++++++.... .+ ...+++..++.
T Consensus 384 ~~~~l~~~~~~~~~~~~~l~~~--~--~-~~~~~~--~~~~sp-dg~~l~~~~~~~~~p~~~~~~~~~~~ 445 (723)
T 1xfd_A 384 RRRQLYSANTVGNFNRQCLSCD--L--V-ENCTYF--SASFSH-SMDFFLLKCEGPGVPMVTVHNTTDKK 445 (723)
T ss_dssp TCCEEEEECSSTTCCCBCSSTT--S--S-SSCCCC--EEEECT-TSSEEEEECCSSSSCCEEEEETTTCC
T ss_pred cceEEEEEeCCCCCCcceeccc--c--c-CCCCeE--EEEECC-CCCEEEEEccCCCCCeEEEEECCCCC
Confidence 789999986532 22222210 0 0 123344 899999 8887776432 22 33445554444
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=2.3e-21 Score=203.52 Aligned_cols=286 Identities=12% Similarity=0.051 Sum_probs=199.1
Q ss_pred EEEeCCCCE-EEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe
Q 004924 380 LIYSHSGDF-LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS 456 (723)
Q Consensus 380 l~fspdg~~-las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s 456 (723)
..|.+++++ +++++.++.|.+||..+++. ..... .+...+ +++|+ ++++++++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---------------------~~~~~--~~~~~~-~~~~s~dg~~l~~~~ 58 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEI---------------------LNQIT--LGYDFV-DTAITSDCSNVVVTS 58 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCE---------------------EEEEE--CCCCEE-EEEECSSSCEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccce---------------------eeeEE--ccCCcc-eEEEcCCCCEEEEEe
Confidence 346666655 66677789999998764322 11111 234455 89999 77666665
Q ss_pred --CCcEEEEEcCCCcE-EEEEeCCCCCeEEEEEcCCC-eEEEEECCC---cEEEEeCCCCcEEEEEcCcCCcEEEEEEcC
Q 004924 457 --GGKISIFSLETFQT-LATFANPPPIATYFILLPQD-LFAFGFDDS---SILVHCPCTKKTKAKLKGHQNRITCLAYSL 529 (723)
Q Consensus 457 --dg~I~vwd~~~~~~-~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg---~I~iwd~~~~~~~~~l~~~~~~i~~l~~sp 529 (723)
++.|.+||+.+++. ...+..+.....+++|+|+| .++++..++ .|.+||+.+++.+..+..+ ....+++|+|
T Consensus 59 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~sp 137 (331)
T 3u4y_A 59 DFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISP 137 (331)
T ss_dssp STTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECT
T ss_pred CCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECC
Confidence 78999999999987 77776666666559999999 777555553 8999999999988887644 4568999999
Q ss_pred CCCEEEEE-eCCCc-EEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E-cCCcEEEEECCCCce--
Q 004924 530 SLNVLVSS-GADAQ-LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNH-- 603 (723)
Q Consensus 530 dg~~l~s~-s~dg~-I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~dg~I~vwd~~~~~~-- 603 (723)
+|++++++ ..++. |.+|++.............+..+ ..+..++|+|+|+++++ + .++.|++||+.+++.
T Consensus 138 dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 138 NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGG-----TRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT 212 (331)
T ss_dssp TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSS-----SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE
T ss_pred CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCC-----CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc
Confidence 99865554 55688 99999986432211111212222 46889999999997766 4 678999999999887
Q ss_pred -eEEecCCCCCCCeEEEEEeeCCcEEEEEe-CCCcEEEEECCCCcE--EEEeecccccCCCCccCccc-eEEEEEecCCC
Q 004924 604 -TSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLEL--RCQINLTAYAQPGTISLELY-PLVIAAHPLEP 678 (723)
Q Consensus 604 -~~~~~~~~h~~~v~~l~~spdg~~l~sgs-~dg~I~iwd~~~~~~--~~~~~~~~~~~~g~~~~~v~-~~~v~~sp~d~ 678 (723)
+..+.. ...+..++|+|||+++++++ .++.|.+||..+++. +..+....... ..... ...++|+| ++
T Consensus 213 ~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~sp-dg 284 (331)
T 3u4y_A 213 LLNAVGT---NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLID----PRPLFGANQMALNK-TE 284 (331)
T ss_dssp EEEEEEC---SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCC----CGGGTTCCCEEECT-TS
T ss_pred eeeeccC---CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccC----CCCcccccceEECC-CC
Confidence 666653 46678899999999877665 478899999999987 33332110000 11111 13689999 88
Q ss_pred CEEEEEE-CCCcEEEEecCCCceeee
Q 004924 679 NRIALGL-TNGRVHVIEPLESEVEWG 703 (723)
Q Consensus 679 ~~las~s-~Dg~v~iWd~~~~~~~w~ 703 (723)
++|++++ .++.|.|||+......+.
T Consensus 285 ~~l~v~~~~~~~v~v~d~~~~~~~~~ 310 (331)
T 3u4y_A 285 TKLFISANISRELKVFTISGKVVGYV 310 (331)
T ss_dssp SEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred CEEEEecCCCCcEEEEEecCCcccce
Confidence 8876555 567999999988765543
No 135
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=3.8e-21 Score=203.56 Aligned_cols=271 Identities=14% Similarity=0.079 Sum_probs=204.9
Q ss_pred CCCceEEEEEeCCCCEEEEEEC-------CCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEE
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQ-------TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF 445 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~-------dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 445 (723)
....+..++|+|+|+++++++. ++.|.+||..++ +...... ....+.++
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~---------------------~~~~~~~---~~~~~~~~ 94 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL---------------------EVTQAIH---NDLKPFGA 94 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC---------------------CEEEEEE---ESSCCCSE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC---------------------eEEEEEe---cCCCcceE
Confidence 3457889999999999988875 457888876532 2222111 22335678
Q ss_pred EEe--CCEEEEEe--CCcEEEEEcCCCcEEEEEeCCCCC---------eEEEEEcCCC-eEEEEE--CCCcEEEEeCCCC
Q 004924 446 ALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPI---------ATYFILLPQD-LFAFGF--DDSSILVHCPCTK 509 (723)
Q Consensus 446 ~~s--~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~~~~---------v~~l~~~p~~-~l~sgs--~dg~I~iwd~~~~ 509 (723)
+|+ |+++++++ ++.|.+||..+++.+..+..+... +.+++|+|++ .+++++ .++.|.+||..++
T Consensus 95 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~ 174 (353)
T 3vgz_A 95 TINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI 174 (353)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT
T ss_pred EECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC
Confidence 888 77665555 699999999999998888754322 6889999999 666665 4789999999999
Q ss_pred cEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E
Q 004924 510 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I 588 (723)
Q Consensus 510 ~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s 588 (723)
+.+..+..+...+.+++|+|+|+.+++++.++.|.+||..+++........ ..++. ..+..++|+|+|+++++ +
T Consensus 175 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~---~~~~~~~~s~dg~~l~~~~ 249 (353)
T 3vgz_A 175 KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL--DDGKE---HFFINISLDTARQRAFITD 249 (353)
T ss_dssp EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECC--CSSSC---CCEEEEEEETTTTEEEEEE
T ss_pred ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC--CCCCC---cccceEEECCCCCEEEEEe
Confidence 999888766667889999999999999999999999999987543322211 11222 56888999999998877 4
Q ss_pred -cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEe-CCCcEEEEECCCCcEEEEeecccccCCCCccCcc
Q 004924 589 -HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 666 (723)
Q Consensus 589 -~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v 666 (723)
.++.|.+||..+++.+..+.... ...++|+|+|+++++++ .++.|.+||..+++.+..+.. ..
T Consensus 250 ~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~---------~~-- 314 (353)
T 3vgz_A 250 SKAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT---------PT-- 314 (353)
T ss_dssp SSSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC---------CS--
T ss_pred CCCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec---------CC--
Confidence 45899999999999888776421 25699999999776655 689999999999998877753 11
Q ss_pred ceEEEEEecCCCCEEEEEECCC
Q 004924 667 YPLVIAAHPLEPNRIALGLTNG 688 (723)
Q Consensus 667 ~~~~v~~sp~d~~~las~s~Dg 688 (723)
.+.+++|+| ++++++++..++
T Consensus 315 ~~~~~~~s~-dg~~l~v~~~~~ 335 (353)
T 3vgz_A 315 HPNSLALSA-DGKTLYVSVKQK 335 (353)
T ss_dssp EEEEEEECT-TSCEEEEEEECC
T ss_pred CCCeEEEcC-CCCEEEEEEccc
Confidence 245899999 888777666554
No 136
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=1.7e-21 Score=218.83 Aligned_cols=276 Identities=11% Similarity=0.065 Sum_probs=212.1
Q ss_pred EEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-C
Q 004924 381 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G 457 (723)
Q Consensus 381 ~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-d 457 (723)
+|+|++..+++++.|++|.+||..+++. +..+.. ++. +.+++|+ |+++++++ |
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~---------------------~~~i~~-g~~--~~~v~~spdg~~l~v~~~d 199 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKI---------------------VKVIDT-GYA--VHISRMSASGRYLLVIGRD 199 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCE---------------------EEEEEC-STT--EEEEEECTTSCEEEEEETT
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceE---------------------EEEEec-Ccc--cceEEECCCCCEEEEECCC
Confidence 3789999999999999999998764322 221110 233 8899999 88999999 9
Q ss_pred CcEEEEEc--CCCcEEEEEeCCCCCeEEEEEcC----CC-eEEEEE-CCCcEEEEeCCCCcEEEEEcCc----------C
Q 004924 458 GKISIFSL--ETFQTLATFANPPPIATYFILLP----QD-LFAFGF-DDSSILVHCPCTKKTKAKLKGH----------Q 519 (723)
Q Consensus 458 g~I~vwd~--~~~~~~~~~~~~~~~v~~l~~~p----~~-~l~sgs-~dg~I~iwd~~~~~~~~~l~~~----------~ 519 (723)
++|.+||+ .+++.+.++.. ...+..++|+| +| ++++++ .+++|.+||..+++++..+..+ .
T Consensus 200 ~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~ 278 (543)
T 1nir_A 200 ARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP 278 (543)
T ss_dssp SEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEES
T ss_pred CeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcccccc
Confidence 99999999 88998888874 55678999999 99 888777 5899999999999999888642 2
Q ss_pred -CcEEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E-cCCcEEE
Q 004924 520 -NRITCLAYSLSLNV-LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDV 595 (723)
Q Consensus 520 -~~i~~l~~spdg~~-l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~dg~I~v 595 (723)
..+..+.++|++.. +++...++.|.+||..+++... +.++..+ ..+.++.|+|+|+++++ + .+++|.+
T Consensus 279 ~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~---~~~i~~~-----~~~~~~~~spdg~~l~va~~~~~~v~v 350 (543)
T 1nir_A 279 EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT---VTSIGAA-----PFLHDGGWDSSHRYFMTAANNSNKVAV 350 (543)
T ss_dssp CCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE---EEEEECC-----SSCCCEEECTTSCEEEEEEGGGTEEEE
T ss_pred CCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce---eEEeccC-----cCccCceECCCCCEEEEEecCCCeEEE
Confidence 37899999997765 5666778999999998754322 1222222 46788999999998876 4 5789999
Q ss_pred EECCCCceeEEecCC--CCCCCeEEEEEeeC-CcEEEEEe-CCCcEEEEECCC-------CcEEEEeecccccCCCCccC
Q 004924 596 YEAPTLNHTSQLVPD--KMDLPITYATYSCD-GKCIYVSC-KSGHVKVFDTST-------LELRCQINLTAYAQPGTISL 664 (723)
Q Consensus 596 wd~~~~~~~~~~~~~--~h~~~v~~l~~spd-g~~l~sgs-~dg~I~iwd~~~-------~~~~~~~~~~~~~~~g~~~~ 664 (723)
||..+++++..+... .|.+....+ ++|+ +..++++. .|++|.+||+.+ ++.+.++..+ ..
T Consensus 351 ~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~--------g~ 421 (543)
T 1nir_A 351 IDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ--------GG 421 (543)
T ss_dssp EETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS--------CS
T ss_pred EECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC--------CC
Confidence 999999998887642 143333333 4777 56666665 589999999998 8888888743 23
Q ss_pred ccceEEEEEecCCCCEEEEEE-------CCCcEEEEecCCCcee
Q 004924 665 ELYPLVIAAHPLEPNRIALGL-------TNGRVHVIEPLESEVE 701 (723)
Q Consensus 665 ~v~~~~v~~sp~d~~~las~s-------~Dg~v~iWd~~~~~~~ 701 (723)
... .+++|| ++++|++++ .+++|.|||+.+++..
T Consensus 422 ~~~--~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 422 GSL--FIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp CCC--CEECCT-TCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred Cce--EEEcCC-CCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 333 799999 899999987 2789999999988755
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=1.7e-21 Score=227.16 Aligned_cols=314 Identities=13% Similarity=0.078 Sum_probs=215.3
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccCCCCce--eEEecCC-------------CCCCCceEEEEEeCCCCEEEEEECCCc
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLINEPSEC--RTLLLPD-------------NSFGGRVVRLIYSHSGDFLVALTQTAT 397 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~~~~~~--~~~~l~~-------------~~h~~~V~~l~fspdg~~las~s~dg~ 397 (723)
++ |..+++++.++ | +||+.++ .. ..+.-.. ..+...|.+++|||| ++++.+. +++
T Consensus 33 w~--g~~~~~~~~~~-i-~~d~~tg----~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~ 102 (706)
T 2z3z_A 33 WM--GDNYVFIEGDD-L-VFNKANG----KSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGG 102 (706)
T ss_dssp EE--TTEEEEEETTE-E-EEEC-----------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTE
T ss_pred Cc--CCeEEEEeCCc-E-EEECCCC----cEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCE
Confidence 55 66777777777 8 9999853 32 2221000 001257999999999 6666554 599
Q ss_pred EEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEeCCcEEEEEcCC-----CcE
Q 004924 398 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLET-----FQT 470 (723)
Q Consensus 398 i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~sdg~I~vwd~~~-----~~~ 470 (723)
+++||+.++.. .... .+...+.+++|+ |++|+++.++.|.+||+.+ ++.
T Consensus 103 i~~~d~~~~~~---------------------~~l~---~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~ 158 (706)
T 2z3z_A 103 LVGFDMLARKV---------------------TYLF---DTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRA 158 (706)
T ss_dssp EEEEETTTTEE---------------------EEEE---CCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCC
T ss_pred EEEEECCCCce---------------------EEcc---CCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCc
Confidence 99999764221 1111 355667889999 8899987799999999998 776
Q ss_pred EEEEeCCCCC--------------eEEEEEcCCC-eEEEEE---------------------------------CCCcEE
Q 004924 471 LATFANPPPI--------------ATYFILLPQD-LFAFGF---------------------------------DDSSIL 502 (723)
Q Consensus 471 ~~~~~~~~~~--------------v~~l~~~p~~-~l~sgs---------------------------------~dg~I~ 502 (723)
......+... +.+++|+||| .|++++ .+..|+
T Consensus 159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~ 238 (706)
T 2z3z_A 159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG 238 (706)
T ss_dssp EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence 6544433332 4789999999 888887 446899
Q ss_pred EEeCCCCcEEEEEc--CcCCcEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCceeeceeeeeeecCCCCCCCCeEE
Q 004924 503 VHCPCTKKTKAKLK--GHQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNH 575 (723)
Q Consensus 503 iwd~~~~~~~~~l~--~~~~~i~~l~~spdg~~l~s~s~dg-----~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 575 (723)
+||+.+++...... .|...+.+++|+|||+.|++++.++ .|++||+.+++... .+. ...+......+.+
T Consensus 239 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~--~~~--~~~~~~~~~~~~~ 314 (706)
T 2z3z_A 239 IYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVR--TLF--VETDKHYVEPLHP 314 (706)
T ss_dssp EEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEE--EEE--EEECSSCCCCCSC
T ss_pred EEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceee--EEE--EccCCCeECccCC
Confidence 99999887655442 4667899999999999999988776 89999999862211 111 1111100012467
Q ss_pred EEEcc--CCCEEEEE-cCCcEEEEECC-CCceeEEecCCCCCCCeEE-EEEeeCCcEEEEEeC-CC----cEEEEECCCC
Q 004924 576 IQFHP--DQIHLLSI-HEGQIDVYEAP-TLNHTSQLVPDKMDLPITY-ATYSCDGKCIYVSCK-SG----HVKVFDTSTL 645 (723)
Q Consensus 576 l~~sp--dg~~l~~s-~dg~I~vwd~~-~~~~~~~~~~~~h~~~v~~-l~~spdg~~l~sgs~-dg----~I~iwd~~~~ 645 (723)
++|+| ||++++++ .++.+++|++. ++..+..+.. +...+.. ++|+|+|+.|+.++. ++ .|+.||..++
T Consensus 315 ~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~--~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 315 LTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK--GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG 392 (706)
T ss_dssp CEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC--SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred ceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC--CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence 89999 99988875 77888888775 5666666643 4666776 799999998876554 44 6778888877
Q ss_pred cEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECC----CcEEEEecCCCc
Q 004924 646 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN----GRVHVIEPLESE 699 (723)
Q Consensus 646 ~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D----g~v~iWd~~~~~ 699 (723)
+. ..+. +...+. +++|+| ++++++.++.+ +.|++||+.+++
T Consensus 393 ~~-~~l~---------~~~~~~--~~~~sp-dg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 393 KT-KDLT---------PESGMH--RTQLSP-DGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CC-EESC---------CSSSEE--EEEECT-TSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred Cc-eecc---------CCCceE--EEEECC-CCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 63 3332 123344 899999 88888766443 569999998876
No 138
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.89 E-value=1.3e-21 Score=229.22 Aligned_cols=292 Identities=10% Similarity=0.062 Sum_probs=205.5
Q ss_pred CCceEEEEEeCCCCEEEEEEC-CC-----cEEEEeccCCcccccccceeeeeEEEecCCC-----------eeeeeccCC
Q 004924 374 GGRVVRLIYSHSGDFLVALTQ-TA-----THKLWKWQSNKQSLEEENVNMESQLYQPSSK-----------LVMTNDIAA 436 (723)
Q Consensus 374 ~~~V~~l~fspdg~~las~s~-dg-----~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 436 (723)
...|.+++|||||++|++++. |+ +|++||+.++.. . .+...... .........
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQT-----R-----LLVDSKVVLPGTETLSDEEKARRERQRI 105 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCE-----E-----EEECGGGTC-------------------
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCce-----e-----Eccchhhcccccccccchhhhhhhhhhh
Confidence 567999999999999999998 88 899999875433 0 01110000 000000000
Q ss_pred CCCCCeEEEEEe--CCEEEEEeCCcEEEEEcCCCc--EEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcE
Q 004924 437 DPKDSISCFALR--GSHLFSASGGKISIFSLETFQ--TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT 511 (723)
Q Consensus 437 ~h~~~V~~v~~s--~~~l~s~sdg~I~vwd~~~~~--~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~ 511 (723)
.....|.+++|+ |++|++++++.|.+||+.++. ....+..+...+.+++|+||| .|++++ ++.|++||+.+++.
T Consensus 106 ~~~~~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~ 184 (741)
T 2ecf_A 106 AAMTGIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ 184 (741)
T ss_dssp -CCEESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE
T ss_pred ccccCcceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE
Confidence 001347789999 889999999999999999873 445566777889999999999 888887 56999999998877
Q ss_pred EEEEcCcCCc----------------EEEEEEcCCCCEEEEEeCCC---------------------------------c
Q 004924 512 KAKLKGHQNR----------------ITCLAYSLSLNVLVSSGADA---------------------------------Q 542 (723)
Q Consensus 512 ~~~l~~~~~~----------------i~~l~~spdg~~l~s~s~dg---------------------------------~ 542 (723)
......+... +..+.|+|||++|++++.|+ .
T Consensus 185 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 185 MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 6554444332 47799999999999988765 7
Q ss_pred EEEEeCCC-CceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-Ec-----CCcEEEEECCCCceeEEecCCCCCC-
Q 004924 543 LCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-----EGQIDVYEAPTLNHTSQLVPDKMDL- 614 (723)
Q Consensus 543 I~vwd~~~-~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~-----dg~I~vwd~~~~~~~~~~~~~~h~~- 614 (723)
|++||+.+ ++... +. ....+. ..+.+++| |||++|++ +. +..|++||+.+++....+... ...
T Consensus 265 l~~~d~~~~~~~~~---~~-~~~~~~---~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~ 335 (741)
T 2ecf_A 265 LGVISPAEQAQTQW---ID-LGKEQD---IYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHET-SPTW 335 (741)
T ss_dssp EEEECSSTTCCCEE---EC-CCSCSS---EEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEE-CSSC
T ss_pred EEEEECCCCCceEE---ec-CCCCcc---eEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcC-CCCc
Confidence 88999987 64321 11 111233 57899999 99999996 32 457999999999876665432 122
Q ss_pred --CeEEEEEeeCCcEEEEEeCCCcEEEEECC-CCcEEEEeecccccCCCCccCccceEEE-EEecCCCCEEE-EEECCC-
Q 004924 615 --PITYATYSCDGKCIYVSCKSGHVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLVI-AAHPLEPNRIA-LGLTNG- 688 (723)
Q Consensus 615 --~v~~l~~spdg~~l~sgs~dg~I~iwd~~-~~~~~~~~~~~~~~~~g~~~~~v~~~~v-~~sp~d~~~la-s~s~Dg- 688 (723)
.+..++|+|||+++++++.||.++||.+. .+. ...+..+ ...+ ..+ .|+| +++.|+ +++.|+
T Consensus 336 ~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--------~~~v--~~~~~~s~-dg~~l~~~~~~~~~ 403 (741)
T 2ecf_A 336 VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--------NWSV--DELLAVDE-KAGLAYFRAGIESA 403 (741)
T ss_dssp CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--------SSCE--EEEEEEET-TTTEEEEEECSSCT
T ss_pred CCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--------ceEE--EeEeEEeC-CCCEEEEEEeCCCC
Confidence 45688999999999999999988888765 344 4444321 2223 366 5999 787665 455555
Q ss_pred -cEEEEecCC
Q 004924 689 -RVHVIEPLE 697 (723)
Q Consensus 689 -~v~iWd~~~ 697 (723)
.++||++..
T Consensus 404 ~~~~l~~~~~ 413 (741)
T 2ecf_A 404 RESQIYAVPL 413 (741)
T ss_dssp TCBEEEEEET
T ss_pred ceEEEEEEEc
Confidence 899999864
No 139
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=2.3e-21 Score=203.53 Aligned_cols=270 Identities=12% Similarity=0.036 Sum_probs=199.6
Q ss_pred CEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCC-CeEEEEEe--CCEEEEEe--CCcEE
Q 004924 387 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD-SISCFALR--GSHLFSAS--GGKIS 461 (723)
Q Consensus 387 ~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~s--~~~l~s~s--dg~I~ 461 (723)
+++++++.++.|.+||..++.. ...... ++.. .+.+++|+ +++++.++ ++.|.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~---------------------~~~~~~-~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~ 59 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV---------------------DKVITI-ADAGPTPMVPMVAPGGRIAYATVNKSESLV 59 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE---------------------EEEEEC-TTCTTCCCCEEECTTSSEEEEEETTTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcE---------------------EEEEEc-CCCCCCccceEEcCCCCEEEEEeCCCCeEE
Confidence 4789999999999999764221 111110 1222 46788999 66665544 78999
Q ss_pred EEEcCCCcEEEEEeCCC-----CCeEEEEEcCCC-eEEEEE------------CCCcEEEEeCCCCcEEEEEcCcCCcEE
Q 004924 462 IFSLETFQTLATFANPP-----PIATYFILLPQD-LFAFGF------------DDSSILVHCPCTKKTKAKLKGHQNRIT 523 (723)
Q Consensus 462 vwd~~~~~~~~~~~~~~-----~~v~~l~~~p~~-~l~sgs------------~dg~I~iwd~~~~~~~~~l~~~~~~i~ 523 (723)
+||+.+++.+..+.... ..+.+++|+|+| .+++++ .++.|.+||+.+++.+..+.. ...+.
T Consensus 60 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~ 138 (337)
T 1pby_B 60 KIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQIT 138 (337)
T ss_dssp EEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCC
T ss_pred EEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcc
Confidence 99999999887776321 246688999999 888776 579999999999988877764 45678
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E-cCC----------
Q 004924 524 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEG---------- 591 (723)
Q Consensus 524 ~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~dg---------- 591 (723)
+++|+|+|++++++ ++.|.+||+.+++.. ..+..+.. ...+.|+|+|+.++. + .++
T Consensus 139 ~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~-----~~~~~~~~-----~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 206 (337)
T 1pby_B 139 MLAWARDGSKLYGL--GRDLHVMDPEAGTLV-----EDKPIQSW-----EAETYAQPDVLAVWNQHESSGVMATPFYTAR 206 (337)
T ss_dssp CEEECTTSSCEEEE--SSSEEEEETTTTEEE-----EEECSTTT-----TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEB
T ss_pred eeEECCCCCEEEEe--CCeEEEEECCCCcEe-----eeeecccc-----CCCceeCCCccEEeeeccCCCceeeeeeccc
Confidence 89999999988887 689999999986432 22222221 112378999887665 2 222
Q ss_pred -------------cEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccC
Q 004924 592 -------------QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ 658 (723)
Q Consensus 592 -------------~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 658 (723)
.|.+||+.+++.. ......+...+.+++|+|||++++++ ++.|++||+.+++.+..+..
T Consensus 207 ~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~----- 278 (337)
T 1pby_B 207 KDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL----- 278 (337)
T ss_dssp TTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-----
T ss_pred cccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-----
Confidence 4789999998875 33333446678899999999999988 79999999999988777653
Q ss_pred CCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCceeeecCC
Q 004924 659 PGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLP 706 (723)
Q Consensus 659 ~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~w~~~~ 706 (723)
...+. +++|+| ++++|++++.++.|++||+.+++.....+.
T Consensus 279 ----~~~~~--~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 279 ----PHSYY--SVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp ----SSCCC--EEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred ----CCcee--eEEECC-CCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 22234 899999 899999889999999999999987665543
No 140
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=6.9e-21 Score=231.56 Aligned_cols=230 Identities=13% Similarity=0.031 Sum_probs=182.1
Q ss_pred CeEEEEEe--CCEEEEEeCCcEEEEEcCCCcEEEEEeC-----------CCCCeEEEEEc-CCC-eEEEEECCCcEEEEe
Q 004924 441 SISCFALR--GSHLFSASGGKISIFSLETFQTLATFAN-----------PPPIATYFILL-PQD-LFAFGFDDSSILVHC 505 (723)
Q Consensus 441 ~V~~v~~s--~~~l~s~sdg~I~vwd~~~~~~~~~~~~-----------~~~~v~~l~~~-p~~-~l~sgs~dg~I~iwd 505 (723)
.+...+|+ |++++.+.++.|.+|++.... +..+.. |...+.+++|+ |+| .+++++ ++.|++|+
T Consensus 246 ~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~ 323 (1045)
T 1k32_A 246 DYYPRHLNTDGRRILFSKGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQD 323 (1045)
T ss_dssp SSCEEEEEESSSCEEEEETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEEC
T ss_pred CcceeeEcCCCCEEEEEeCCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEc
Confidence 45667888 888888889999999995443 335544 23368899999 999 888887 88999999
Q ss_pred CCCCcEEEEEcCcCC-cEEEEEEcCCCCEEEEEeCCCcEE-EEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCC
Q 004924 506 PCTKKTKAKLKGHQN-RITCLAYSLSLNVLVSSGADAQLC-VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 583 (723)
Q Consensus 506 ~~~~~~~~~l~~~~~-~i~~l~~spdg~~l~s~s~dg~I~-vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~ 583 (723)
..+++.. .+..|.. .+..++|+ ||+.+++++.++.+. +||+.++.. ..+. ++. ..+..++|+|||+
T Consensus 324 ~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~------~~l~-~~~---~~~~~~~~SpDG~ 391 (1045)
T 1k32_A 324 VSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA------EKFE-ENL---GNVFAMGVDRNGK 391 (1045)
T ss_dssp TTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE------EECC-CCC---CSEEEEEECTTSS
T ss_pred CCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc------eEec-CCc---cceeeeEECCCCC
Confidence 9887654 4666777 89999999 999999999888888 999987532 2233 444 6899999999999
Q ss_pred EEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCC----------cEEEEECCCCcEEEEee
Q 004924 584 HLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG----------HVKVFDTSTLELRCQIN 652 (723)
Q Consensus 584 ~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg----------~I~iwd~~~~~~~~~~~ 652 (723)
+|++ +.++.|++||+.+++...... .|...+.+++|||||++|++++.++ .|++||+.+++ ...+.
T Consensus 392 ~la~~~~~~~v~~~d~~tg~~~~~~~--~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~ 468 (1045)
T 1k32_A 392 FAVVANDRFEIMTVDLETGKPTVIER--SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAAT 468 (1045)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEE--CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECS
T ss_pred EEEEECCCCeEEEEECCCCceEEecc--CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEee
Confidence 9998 588899999999998766654 3577889999999999999887654 89999999987 44443
Q ss_pred cccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCC
Q 004924 653 LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 653 ~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
.+ ... +.+++|+| +|++|++++.++...+|+....
T Consensus 469 ~~--------~~~--~~~~~~sp-dG~~l~~~s~~~~~~~~~~~~~ 503 (1045)
T 1k32_A 469 TE--------NSH--DYAPAFDA-DSKNLYYLSYRSLDPSPDRVVL 503 (1045)
T ss_dssp CS--------SSB--EEEEEECT-TSCEEEEEESCCCCCEECSSSS
T ss_pred CC--------Ccc--cCCceEcC-CCCEEEEEecccCCcCcchhcc
Confidence 21 222 34899999 8999999999999888986543
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=3.1e-20 Score=194.96 Aligned_cols=273 Identities=9% Similarity=0.029 Sum_probs=189.5
Q ss_pred CCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEEC-CCcEEEEeccCCcccccccce
Q 004924 337 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENV 415 (723)
Q Consensus 337 g~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~-dg~i~iWd~~~~~~~~g~~~~ 415 (723)
+..+++++.++.|.+||..+ +++... +.. +...+ +++|+|+|+++++++. ++.|.+||..++.. .
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~----~~~~~~-~~~--~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-----~- 75 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDT----LEILNQ-ITL--GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP-----K- 75 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTT----CCEEEE-EEC--CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC-----E-
T ss_pred CEEEEEecCCCeEEEEeCcc----cceeee-EEc--cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce-----e-
Confidence 34467788899999999884 444333 222 45566 9999999998777776 88999998764321 0
Q ss_pred eeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-C-C--cEEEEEcCCCcEEEEEeCCCCCeEEEEEcCC
Q 004924 416 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G-G--KISIFSLETFQTLATFANPPPIATYFILLPQ 489 (723)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-d-g--~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~ 489 (723)
..... .+..+..+++|+ |++++++. + + .|.+||+.+++.+..+..+ ....+++|+|+
T Consensus 76 --------------~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spd 138 (331)
T 3u4y_A 76 --------------VVAIQ--EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPN 138 (331)
T ss_dssp --------------EEEEE--ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTT
T ss_pred --------------EEecc--cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCC
Confidence 11011 244455558999 78888555 3 3 8999999999988887654 45689999999
Q ss_pred C-eEE-EEECCCc-EEEEeCCCCcEE----EEEcCcCCcEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeeceeeee
Q 004924 490 D-LFA-FGFDDSS-ILVHCPCTKKTK----AKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHS 561 (723)
Q Consensus 490 ~-~l~-sgs~dg~-I~iwd~~~~~~~----~~l~~~~~~i~~l~~spdg~~l~s~s-~dg~I~vwd~~~~~~~~~~~l~~ 561 (723)
| .++ ++..++. |.+|++.....+ ............++|+|+|+++++++ .++.|.+||+.+++.. ..+..
T Consensus 139 g~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~--~~~~~ 216 (331)
T 3u4y_A 139 GNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI--TLLNA 216 (331)
T ss_dssp SSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC--EEEEE
T ss_pred CCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc--ceeee
Confidence 9 555 4456688 999998764332 11223445689999999999665554 6889999999986541 11332
Q ss_pred eecCCCCCCCCeEEEEEccCCCEEEEE--cCCcEEEEECCCCce--eEEecCC--CCC---CCeEEEEEeeCCcEEEEEe
Q 004924 562 FQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNH--TSQLVPD--KMD---LPITYATYSCDGKCIYVSC 632 (723)
Q Consensus 562 ~~~~~~~~~~~v~~l~~spdg~~l~~s--~dg~I~vwd~~~~~~--~~~~~~~--~h~---~~v~~l~~spdg~~l~sgs 632 (723)
+..+ ..+..++|+|+|++++++ .++.|.+||+.+++. +..+... .+. .....++|+|||++|++++
T Consensus 217 ~~~~-----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~ 291 (331)
T 3u4y_A 217 VGTN-----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISA 291 (331)
T ss_dssp EECS-----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEE
T ss_pred ccCC-----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEec
Confidence 3332 467889999999988764 567899999998877 3333221 011 2235689999999887665
Q ss_pred C-CCcEEEEECCCCcE
Q 004924 633 K-SGHVKVFDTSTLEL 647 (723)
Q Consensus 633 ~-dg~I~iwd~~~~~~ 647 (723)
. ++.|.+||+.....
T Consensus 292 ~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 292 NISRELKVFTISGKVV 307 (331)
T ss_dssp TTTTEEEEEETTSCEE
T ss_pred CCCCcEEEEEecCCcc
Confidence 5 57999999987653
No 142
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=1.2e-20 Score=198.03 Aligned_cols=275 Identities=12% Similarity=0.087 Sum_probs=200.3
Q ss_pred CEEEEEeCCCeEEEEeecccCCCCce-eEEecCCCCCCC-ceEEEEEeCCCCEEEEE-ECCCcEEEEeccCCcccccccc
Q 004924 338 DSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGG-RVVRLIYSHSGDFLVAL-TQTATHKLWKWQSNKQSLEEEN 414 (723)
Q Consensus 338 ~~la~~s~dg~v~iw~~~~~~~~~~~-~~~~l~~~~h~~-~V~~l~fspdg~~las~-s~dg~i~iWd~~~~~~~~g~~~ 414 (723)
+++++++.++.|.+||..+ +.. ..+.++ +.. .+.+++|+|+|++++.+ +.++.|.+||..++.. .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~----~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-----~ 69 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEK----MAVDKVITIA---DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-----L 69 (337)
T ss_dssp EEEEEEETTTEEEEEETTT----TEEEEEEECT---TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-----E
T ss_pred cEEEEcCCCCeEEEEECCC----CcEEEEEEcC---CCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe-----E
Confidence 4689999999999999874 333 333321 222 58899999999876554 4578999999764322 1
Q ss_pred eeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-------------CCcEEEEEcCCCcEEEEEeCCCC
Q 004924 415 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-------------GGKISIFSLETFQTLATFANPPP 479 (723)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-------------dg~I~vwd~~~~~~~~~~~~~~~ 479 (723)
.. +..... ..|...+.+++|+ |+++++++ ++.|.+||+.+++....+.. ..
T Consensus 70 ~~-----~~~~~~--------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~ 135 (337)
T 1pby_B 70 GR-----IDLSTP--------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PR 135 (337)
T ss_dssp EE-----EECCBT--------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CS
T ss_pred ee-----EEcCCc--------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CC
Confidence 11 110000 0012245678898 77888774 58999999999988877765 34
Q ss_pred CeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCC-----------------
Q 004924 480 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA----------------- 541 (723)
Q Consensus 480 ~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg----------------- 541 (723)
.+.+++|+|++ .++++ ++.|.+||+.+++....+..+... ..+.|+|+|..++..+.++
T Consensus 136 ~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 212 (337)
T 1pby_B 136 QITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA 212 (337)
T ss_dssp SCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTT
T ss_pred CcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccc
Confidence 56788999999 77777 689999999999988777654311 1237899988765544332
Q ss_pred -------cEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCCCCCC
Q 004924 542 -------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDL 614 (723)
Q Consensus 542 -------~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~ 614 (723)
.|.+||+.+++.. . +. + ..+. ..+.+++|+|+|++++++ ++.|++||+.+++.+..+.. ..
T Consensus 213 ~~~~~~~~v~~~d~~~~~~~-~--~~-~-~~~~---~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~---~~ 280 (337)
T 1pby_B 213 DPTAYRTGLLTMDLETGEMA-M--RE-V-RIMD---VFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL---PH 280 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEE-E--EE-E-EECS---SCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC---SS
T ss_pred cccccccceEEEeCCCCCce-E--ee-c-CCCC---CceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecC---CC
Confidence 4689999987543 1 11 1 1222 468899999999999988 79999999999988877753 35
Q ss_pred CeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeec
Q 004924 615 PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 653 (723)
Q Consensus 615 ~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 653 (723)
.+.+++|+|+|++|++++.++.|++||+.+++.+..+..
T Consensus 281 ~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 281 SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp CCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred ceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 678999999999999999999999999999998888764
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=3.4e-20 Score=195.01 Aligned_cols=269 Identities=13% Similarity=0.086 Sum_probs=184.0
Q ss_pred EEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-C-CcEEEEE
Q 004924 389 LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G-GKISIFS 464 (723)
Q Consensus 389 las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-d-g~I~vwd 464 (723)
+++++.|+.|++|++... +.. ..+... .+...+.+++|+ ++++++++ + +.|.+|+
T Consensus 8 ~~~~~~~~~v~~~~~~~~----~~~--------------~~~~~~---~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~ 66 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHE----GAL--------------TLTQVV---DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 66 (343)
T ss_dssp EEEEGGGTEEEEEEECTT----SCE--------------EEEEEE---ECSSCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEeCCCCCeEEEEEECCC----CcE--------------EEeeeE---ecCCCCceEEECCCCCEEEEeecCCCeEEEEE
Confidence 344467999999997521 110 011111 266678889999 88888888 5 8999999
Q ss_pred cC--CCc--EEEEEeCCCCCeEEEEEcCCC-eEEEEEC-CCcEEEEeCC---CCcEEEEEcCcCCcEEEEEEcCCCCEEE
Q 004924 465 LE--TFQ--TLATFANPPPIATYFILLPQD-LFAFGFD-DSSILVHCPC---TKKTKAKLKGHQNRITCLAYSLSLNVLV 535 (723)
Q Consensus 465 ~~--~~~--~~~~~~~~~~~v~~l~~~p~~-~l~sgs~-dg~I~iwd~~---~~~~~~~l~~~~~~i~~l~~spdg~~l~ 535 (723)
+. +++ .+..+..+. .+.+++|+|++ .+++++. ++.|.+||+. +++....+..+ ..+.+++|+|+|+.++
T Consensus 67 ~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~ 144 (343)
T 1ri6_A 67 IAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLW 144 (343)
T ss_dssp ECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEE
T ss_pred ecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEE
Confidence 97 554 334454444 77899999999 7766664 8899999994 33445555543 4588999999999888
Q ss_pred EEe-CCCcEEEEeCCC-CceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E-cCCcEEEEECCC--Cce--eEEe
Q 004924 536 SSG-ADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPT--LNH--TSQL 607 (723)
Q Consensus 536 s~s-~dg~I~vwd~~~-~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~dg~I~vwd~~~--~~~--~~~~ 607 (723)
+++ .++.|++||+.+ +........ ....... ..+..++|+|+|+++++ + .++.|.+||+.. ++. ...+
T Consensus 145 ~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~ 220 (343)
T 1ri6_A 145 VPALKQDRICLFTVSDDGHLVAQDPA-EVTTVEG---AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL 220 (343)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEE-EEECSTT---CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEE
T ss_pred EecCCCCEEEEEEecCCCceeeeccc-ccccCCC---CCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeec
Confidence 887 899999999987 533211100 1111111 47889999999998776 4 788999999953 432 2222
Q ss_pred cC--CC--CCCCeEEEEEeeCCcEEEEE-eCCCcEEEEECC--CC--cEEEEeecccccCCCCccCccceEEEEEecCCC
Q 004924 608 VP--DK--MDLPITYATYSCDGKCIYVS-CKSGHVKVFDTS--TL--ELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 678 (723)
Q Consensus 608 ~~--~~--h~~~v~~l~~spdg~~l~sg-s~dg~I~iwd~~--~~--~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 678 (723)
.. .. ....+..++|+|+|++|+++ ..++.|++|++. ++ +.+..+.. ... +.+++|+| ++
T Consensus 221 ~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~---------~~~--~~~~~~s~-dg 288 (343)
T 1ri6_A 221 DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT---------ETQ--PRGFNVDH-SG 288 (343)
T ss_dssp ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC---------SSS--CCCEEECT-TS
T ss_pred cccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC---------CCc--cceEEECC-CC
Confidence 21 11 13467789999999988754 478999999998 33 33333321 112 34899999 88
Q ss_pred CEEEEEE-CCCcEEEEecC
Q 004924 679 NRIALGL-TNGRVHVIEPL 696 (723)
Q Consensus 679 ~~las~s-~Dg~v~iWd~~ 696 (723)
++|++++ .|+.|.+|++.
T Consensus 289 ~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 289 KYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp SEEEEECTTTCEEEEEEEE
T ss_pred CEEEEecCCCCeEEEEEEc
Confidence 8888877 68999999554
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=1.1e-19 Score=192.37 Aligned_cols=269 Identities=10% Similarity=0.027 Sum_probs=197.1
Q ss_pred cccCCCCCEEEEEeC-------CCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEEC-CCcEEEEe
Q 004924 331 STSLPDADSAVCAKS-------LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWK 402 (723)
Q Consensus 331 ~~~spdg~~la~~s~-------dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~-dg~i~iWd 402 (723)
..++|+|+++++++. ++.|.+||..+ ......+. ....+..++|+|+|++++.++. ++.|.+||
T Consensus 46 ~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~---~~~~~~~~-----~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPVT---LEVTQAIH-----NDLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EEEETTTTEEEEEECCCTTTEESEEEEEECTTT---CCEEEEEE-----ESSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC---CeEEEEEe-----cCCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 348999999988885 45799999874 22233332 2345788999999996665554 78999999
Q ss_pred ccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe---CCcEEEEEcCCCcEEEEEeCC
Q 004924 403 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATFANP 477 (723)
Q Consensus 403 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s---dg~I~vwd~~~~~~~~~~~~~ 477 (723)
..++.. ... +....+.... ......+.+++|+ ++++++++ ++.|.+||..+++....+..+
T Consensus 118 ~~~~~~-----~~~-----~~~~~~~~~~----~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 183 (353)
T 3vgz_A 118 AKTGEV-----KGR-----LVLDDRKRTE----EVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT 183 (353)
T ss_dssp TTTCCE-----EEE-----EESCCCCCCS----SCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCC
T ss_pred CCCCee-----EEE-----EecCCCcccc----ccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCC
Confidence 764322 111 1110000000 0011236789998 77666655 688999999999999888756
Q ss_pred CCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcC----cCCcEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCC
Q 004924 478 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG----HQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGW 551 (723)
Q Consensus 478 ~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~----~~~~i~~l~~spdg~~l~s~s~-dg~I~vwd~~~~ 551 (723)
...+.+++|+|++ .+++++.++.|.+||..+++.+..+.. +...+..++|+|+|+.+++++. ++.|.+||..++
T Consensus 184 ~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 184 GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG 263 (353)
T ss_dssp CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 6667889999999 899999999999999999998877764 5567889999999998777665 489999999886
Q ss_pred ceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEE
Q 004924 552 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY 629 (723)
Q Consensus 552 ~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~ 629 (723)
+.... +..+ ....++|+|+|+++++ + .++.|.+||..+++.+..+.. ...+.+++|+|||++|+
T Consensus 264 ~~~~~-----~~~~------~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~ 329 (353)
T 3vgz_A 264 NILAK-----VAAP------ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT---PTHPNSLALSADGKTLY 329 (353)
T ss_dssp CEEEE-----EECS------SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC---CSEEEEEEECTTSCEEE
T ss_pred cEEEE-----EEcC------CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec---CCCCCeEEEcCCCCEEE
Confidence 54322 2222 2246999999997766 4 689999999999998887754 45688999999999888
Q ss_pred EEeCCC
Q 004924 630 VSCKSG 635 (723)
Q Consensus 630 sgs~dg 635 (723)
++..++
T Consensus 330 v~~~~~ 335 (353)
T 3vgz_A 330 VSVKQK 335 (353)
T ss_dssp EEEECC
T ss_pred EEEccc
Confidence 777654
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=4.2e-21 Score=224.30 Aligned_cols=282 Identities=13% Similarity=0.102 Sum_probs=196.0
Q ss_pred CceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCC---CeEEEEEe--C
Q 004924 375 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD---SISCFALR--G 449 (723)
Q Consensus 375 ~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~v~~s--~ 449 (723)
..+.+++|||||+++++ +.||+|++||..++.. . .+.. +|.. .|.+++|+ |
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~-----~-----~~~~-------------~~~~~~~~v~~~~~SpDg 72 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS-----T-----VLIE-------------GKKIESLRAIRYEISPDR 72 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC-----E-----EEEC-------------TTTTTTTTCSEEEECTTS
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcE-----E-----EEec-------------cccccccccceEEECCCC
Confidence 34678999999997766 7899999999875332 1 1111 2333 48999999 8
Q ss_pred CEEEEEe-C---------CcEEEEEcCCCcEEEEEe---CCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEE
Q 004924 450 SHLFSAS-G---------GKISIFSLETFQTLATFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL 515 (723)
Q Consensus 450 ~~l~s~s-d---------g~I~vwd~~~~~~~~~~~---~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l 515 (723)
++|++++ + +.+.+||+.+++. ..+. .+...+.+++|+||| .|+.++. +.|++||+.+++.....
T Consensus 73 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~ 150 (723)
T 1xfd_A 73 EYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVV 150 (723)
T ss_dssp SEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEE
T ss_pred CEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEe
Confidence 8999887 4 6788999998876 3343 344458889999999 9988885 79999999998887766
Q ss_pred cCcCCcE------------------EEEEEcCCCCEEEEEeCCC----------------------------------cE
Q 004924 516 KGHQNRI------------------TCLAYSLSLNVLVSSGADA----------------------------------QL 543 (723)
Q Consensus 516 ~~~~~~i------------------~~l~~spdg~~l~s~s~dg----------------------------------~I 543 (723)
..+...+ .++.|+|||+.|++++.|+ .|
T Consensus 151 ~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 151 STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 5544333 7899999999999987653 78
Q ss_pred EEEeCCCCceeeceeeee--eecCCCCCCCCeEEEEEccCCCEEEEE-c----CCcEEEEECCCCceeEEecCCCCCCCe
Q 004924 544 CVWDAVGWKKLCSKFLHS--FQTGLVPETTIVNHIQFHPDQIHLLSI-H----EGQIDVYEAPTLNHTSQLVPDKMDLPI 616 (723)
Q Consensus 544 ~vwd~~~~~~~~~~~l~~--~~~~~~~~~~~v~~l~~spdg~~l~~s-~----dg~I~vwd~~~~~~~~~~~~~~h~~~v 616 (723)
++||+.+++... .+.. ....+. ..+.+++|+|||+++++. . +..|++||+.++++...+.. .+...+
T Consensus 231 ~~~d~~~~~~~~--~l~~~~~~~~~~---~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~ 304 (723)
T 1xfd_A 231 HVIGLNGPTHDL--EMMPPDDPRMRE---YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED-ESEAWL 304 (723)
T ss_dssp EEEESSSSCCCE--ECCCCCCGGGSS---EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE-ECSSCC
T ss_pred EEEECCCCceeE--EeeCCccCCCcc---ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe-ccCCEE
Confidence 999998864211 1110 001112 578899999999988763 2 24799999999887655432 123333
Q ss_pred ----EEEEEeeCCcEEEE--EeCCC------cEEEEE-CCCCcE--EEEeecccccCCCCccCccceEEEEEecCCCCEE
Q 004924 617 ----TYATYSCDGKCIYV--SCKSG------HVKVFD-TSTLEL--RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 681 (723)
Q Consensus 617 ----~~l~~spdg~~l~s--gs~dg------~I~iwd-~~~~~~--~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~l 681 (723)
..++|||||+.|+. +..++ .|++|| ..++.. ...+.. + ...+. ..++|+| +++.|
T Consensus 305 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~------~--~~~~~-~~~~~sp-dg~~l 374 (723)
T 1xfd_A 305 HRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS------G--DWDVT-KILAYDE-KGNKI 374 (723)
T ss_dssp CCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC------S--SSCEE-EEEEEET-TTTEE
T ss_pred eccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec------C--CeEEE-eeeEEcC-CCCEE
Confidence 37899999997775 45566 577787 344441 333321 1 11121 1369999 89988
Q ss_pred EEEECC---CcEEEEecCCC
Q 004924 682 ALGLTN---GRVHVIEPLES 698 (723)
Q Consensus 682 as~s~D---g~v~iWd~~~~ 698 (723)
+..+.+ +.++||++...
T Consensus 375 ~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 375 YFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp EEEESSSCTTCCEEEEECSS
T ss_pred EEEEcCCCCcceEEEEEeCC
Confidence 766655 78999998653
No 146
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.86 E-value=5.4e-19 Score=188.17 Aligned_cols=286 Identities=11% Similarity=0.086 Sum_probs=188.4
Q ss_pred CCCCCEEEEEe----CCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECC----CcEEEEeccC
Q 004924 334 LPDADSAVCAK----SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT----ATHKLWKWQS 405 (723)
Q Consensus 334 spdg~~la~~s----~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~d----g~i~iWd~~~ 405 (723)
.+...++++|+ .++.|.+|.++.. .+........ +...+..++|+|||++|++++.+ +.|.+|++..
T Consensus 10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~--~g~~~~~~~~---~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~ 84 (361)
T 3scy_A 10 TDSELTMLVGTYTSGNSKGIYTFRFNEE--TGESLPLSDA---EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDK 84 (361)
T ss_dssp GGGEEEEEEEECCSSSCCEEEEEEEETT--TCCEEEEEEE---ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEET
T ss_pred CCCceEEEEEeccCCCCCCEEEEEEeCC--CCCEEEeecc---cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeC
Confidence 33444566664 3568999988642 3444433211 46778889999999999999986 7999998653
Q ss_pred CcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe--CCcEEEEEcCCCcEEEE----E--eC-
Q 004924 406 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS--GGKISIFSLETFQTLAT----F--AN- 476 (723)
Q Consensus 406 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s--dg~I~vwd~~~~~~~~~----~--~~- 476 (723)
.++.+........+......+++.++++++++ ++.|.+|++.....+.. . .+
T Consensus 85 -------------------~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~ 145 (361)
T 3scy_A 85 -------------------EKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGS 145 (361)
T ss_dssp -------------------TTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCC
T ss_pred -------------------CCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCC
Confidence 11211110000023445666777777777776 78999999975432211 1 11
Q ss_pred -------CCCCeEEEEEcCCC-eEEEEE-CCCcEEEEeCCCCc-------E------EEEEcCcCCcEEEEEEcCCCCEE
Q 004924 477 -------PPPIATYFILLPQD-LFAFGF-DDSSILVHCPCTKK-------T------KAKLKGHQNRITCLAYSLSLNVL 534 (723)
Q Consensus 477 -------~~~~v~~l~~~p~~-~l~sgs-~dg~I~iwd~~~~~-------~------~~~l~~~~~~i~~l~~spdg~~l 534 (723)
+...+.+++|+|+| .+++++ .++.|.+|++.... . ......+...+..++|+|||+++
T Consensus 146 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l 225 (361)
T 3scy_A 146 GPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFA 225 (361)
T ss_dssp CSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred CCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEE
Confidence 12345789999999 666555 57899999877533 1 11122345567899999999988
Q ss_pred EEEe-CCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-Ec--CCcEEEEECC--CCc--eeEE
Q 004924 535 VSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH--EGQIDVYEAP--TLN--HTSQ 606 (723)
Q Consensus 535 ~s~s-~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~--dg~I~vwd~~--~~~--~~~~ 606 (723)
++++ .++.|.+||+.++.......+.... .+. .....++|+|||++|++ .. ++.|.+|++. +++ .+..
T Consensus 226 ~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~-~~~---~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~ 301 (361)
T 3scy_A 226 YLINEIGGTVIAFRYADGMLDEIQTVAADT-VNA---QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGY 301 (361)
T ss_dssp EEEETTTCEEEEEEEETTEEEEEEEEESCS-SCC---CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEE
T ss_pred EEEcCCCCeEEEEEecCCceEEeEEEecCC-CCC---CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeE
Confidence 7777 6899999999876432222222111 122 45789999999999877 43 5789999985 455 3333
Q ss_pred ecCCCCCCCeEEEEEeeCCcEEEEEe-CCCcEEEE--ECCCCcEEEE
Q 004924 607 LVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVF--DTSTLELRCQ 650 (723)
Q Consensus 607 ~~~~~h~~~v~~l~~spdg~~l~sgs-~dg~I~iw--d~~~~~~~~~ 650 (723)
+.. ...+.+++|+|||++|++++ .++.|.+| |..+|++...
T Consensus 302 ~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 302 QLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp EEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred ecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 332 45677999999999998887 56899996 5557765443
No 147
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=3.8e-19 Score=194.25 Aligned_cols=309 Identities=12% Similarity=0.083 Sum_probs=197.1
Q ss_pred CCceEEEEEeCCCCEEEEEECCCcEEEEeccCCccc--ccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--C
Q 004924 374 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS--LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 449 (723)
Q Consensus 374 ~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~ 449 (723)
...++.+++++++.++++++.|+ +++|+....... .+.... .+........+ .+...|.+++|+ |
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------~~~~~v~~l~~spdg 104 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPN----KIVDKVQGLLV------PMKFPIHHLALSCDN 104 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTT----CEEECCCCEEE------CCSSCEEEEEECTTS
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcc----cccccCccccc------cCCCcccEEEEcCCC
Confidence 45688999999999999999888 889886432110 000000 00111111111 367789999999 8
Q ss_pred CEEE----EEe-CCcEEEEEcCCC--------cE---EEEEeCCCCCeEEEEEcCC-C-eEEEEECCCcEEEEeCCCCcE
Q 004924 450 SHLF----SAS-GGKISIFSLETF--------QT---LATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKT 511 (723)
Q Consensus 450 ~~l~----s~s-dg~I~vwd~~~~--------~~---~~~~~~~~~~v~~l~~~p~-~-~l~sgs~dg~I~iwd~~~~~~ 511 (723)
++|+ +|+ |+.|++||+.++ +. ...+.+|...|.+++|+|+ + .|++|+.||+|++||++++..
T Consensus 105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence 8888 666 899999998765 22 4455678999999999998 5 999999999999999999877
Q ss_pred EEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeee-eecCCCCCCCCeEEEEEccCCCEEEE-E-
Q 004924 512 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-FQTGLVPETTIVNHIQFHPDQIHLLS-I- 588 (723)
Q Consensus 512 ~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~-~~~~~~~~~~~v~~l~~spdg~~l~~-s- 588 (723)
.....+|...|.+++|+|+|++|++|+.||+|++||++ +.......... ....|. ..|.+++|++++.++++ +
T Consensus 185 ~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~---~~v~~v~w~~~~~~l~~~~~ 260 (434)
T 2oit_A 185 VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHP---VRVLDVLWIGTYVFAIVYAA 260 (434)
T ss_dssp EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSC---EEEEEEEEEETTEEEEEEEE
T ss_pred eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCc---eeEEEEEEecCceEEEEEcc
Confidence 77777899999999999999999999999999999998 32221111110 001121 37999999999988876 3
Q ss_pred cCC------cEEEEECCCCc-----eeEEecCC-----CCCCCeEEEEEeeCCcEEEEEeC-CCcEEEEECCCCc-EE--
Q 004924 589 HEG------QIDVYEAPTLN-----HTSQLVPD-----KMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLE-LR-- 648 (723)
Q Consensus 589 ~dg------~I~vwd~~~~~-----~~~~~~~~-----~h~~~v~~l~~spdg~~l~sgs~-dg~I~iwd~~~~~-~~-- 648 (723)
.+| .+++|++++.+ ....+... ....+-..+.+-++.+++++++. .+.|.++...... ..
T Consensus 261 ~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~ 340 (434)
T 2oit_A 261 ADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWES 340 (434)
T ss_dssp TTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEE
T ss_pred CCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEE
Confidence 443 38999998642 11222111 11223333444477777766554 4557777654321 11
Q ss_pred EEeec--ccccCCCCccCccceEEEEEe--cC------------CCCEEEEEECCCcEEEEecCC
Q 004924 649 CQINL--TAYAQPGTISLELYPLVIAAH--PL------------EPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 649 ~~~~~--~~~~~~g~~~~~v~~~~v~~s--p~------------d~~~las~s~Dg~v~iWd~~~ 697 (723)
..+.- ...+|....+....++.+++. .. --..|.+.+.||.+..|.+-.
T Consensus 341 ~~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 341 WLLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp EEECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred EeccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 11110 000111111122233333332 10 124788889999999998765
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=6.1e-20 Score=188.22 Aligned_cols=252 Identities=10% Similarity=-0.012 Sum_probs=179.1
Q ss_pred EeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccC-CcccccccceeeeeEE
Q 004924 343 AKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS-NKQSLEEENVNMESQL 421 (723)
Q Consensus 343 ~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~-~~~~~g~~~~~~~~~~ 421 (723)
++.+++|++|++.+ +....+ .. |...|.+++|+|+|++|++++ ++.|.+||+.+ +..
T Consensus 18 ~~~~~~i~~~d~~~----~~~~~~--~~--~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~------------- 75 (297)
T 2ojh_A 18 GSMRSSIEIFNIRT----RKMRVV--WQ--TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP------------- 75 (297)
T ss_dssp CCCCEEEEEEETTT----TEEEEE--EE--ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC-------------
T ss_pred CCcceeEEEEeCCC----Cceeee--cc--CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc-------------
Confidence 45688999999974 444433 22 788999999999999999987 78999999774 322
Q ss_pred EecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-C--CcEEEE--EcCCCcEEEEEeCCCCCeEEEEEcCCC-eEE
Q 004924 422 YQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G--GKISIF--SLETFQTLATFANPPPIATYFILLPQD-LFA 493 (723)
Q Consensus 422 ~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-d--g~I~vw--d~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~ 493 (723)
.... ...+...+.+++|+ ++++++++ + +...+| +..+++ ...+..+ ..+.+++|+|++ .++
T Consensus 76 --------~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~ 144 (297)
T 2ojh_A 76 --------EKVD-TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFT 144 (297)
T ss_dssp --------EECC-CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEE
T ss_pred --------eEec-cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEE
Confidence 1100 01234678889999 88888887 3 345555 445544 3444433 348899999999 665
Q ss_pred -EEECCCcEEEEeCCC-CcEEEEEcCcCCcEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeeceeeeeeecCCCCCC
Q 004924 494 -FGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 570 (723)
Q Consensus 494 -sgs~dg~I~iwd~~~-~~~~~~l~~~~~~i~~l~~spdg~~l~s~s-~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~ 570 (723)
+++.++.+.+|+++. +.....+..+...+.++.|+|+|+.+++++ .++.+++|++.... ..+..+. .+.
T Consensus 145 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~----~~~~~~~-~~~--- 216 (297)
T 2ojh_A 145 YCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG----SSVERIT-DSA--- 216 (297)
T ss_dssp EEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS----SCEEECC-CCS---
T ss_pred EEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC----CCcEEEe-cCC---
Confidence 788899999998532 234456667888999999999999888766 58999999886211 1122222 232
Q ss_pred CCeEEEEEccCCCEEEE-EcC-----------CcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCC
Q 004924 571 TIVNHIQFHPDQIHLLS-IHE-----------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG 635 (723)
Q Consensus 571 ~~v~~l~~spdg~~l~~-s~d-----------g~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg 635 (723)
..+.+++|+|+|++|++ +.+ +.|++||+.+++.........|...+.+++|+|+|++|++++.+.
T Consensus 217 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 217 YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 57889999999999887 443 469999998887644333223577888999999999999887653
No 149
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=5.2e-19 Score=187.11 Aligned_cols=245 Identities=15% Similarity=0.120 Sum_probs=166.2
Q ss_pred CCCCeEEEEEe--CCEEEEEe----CCcEEEEEcCCCc--EEEEEeCCCCCeEEEEEcCCC-eEEEEE-CCCcEEEEeCC
Q 004924 438 PKDSISCFALR--GSHLFSAS----GGKISIFSLETFQ--TLATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHCPC 507 (723)
Q Consensus 438 h~~~V~~v~~s--~~~l~s~s----dg~I~vwd~~~~~--~~~~~~~~~~~v~~l~~~p~~-~l~sgs-~dg~I~iwd~~ 507 (723)
+...+..++|+ |+ +++++ ++.|.+|++.+++ .+..+..+...+..++|+|+| .+++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence 44566789999 55 55554 3799999997765 344444566778899999999 888877 67899999986
Q ss_pred -CCc--EEEEEcC---------cCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCceeeceeeeeeecCCCCCCCCeE
Q 004924 508 -TKK--TKAKLKG---------HQNRITCLAYSLSLNVLVSSGADAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVN 574 (723)
Q Consensus 508 -~~~--~~~~l~~---------~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~-~~~~~~~~~l~~~~~~~~~~~~~v~ 574 (723)
++. .+..+.. +...+.+++|+|+|+.+++...++.|.+||+. ++......... ...+ ..+.
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-~~~g-----~~p~ 190 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT-MEAG-----FGPR 190 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE-CCTT-----CCEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE-cCCC-----CCCc
Confidence 333 2333321 12348899999999966666678899999998 44322111111 1111 4678
Q ss_pred EEEEccCCCEEEE-E-cCCcEEEEECCC--Cce--eEEecCCCC----CCCeEEEEEeeCCcEEE-EEeCCCcEEEEECC
Q 004924 575 HIQFHPDQIHLLS-I-HEGQIDVYEAPT--LNH--TSQLVPDKM----DLPITYATYSCDGKCIY-VSCKSGHVKVFDTS 643 (723)
Q Consensus 575 ~l~~spdg~~l~~-s-~dg~I~vwd~~~--~~~--~~~~~~~~h----~~~v~~l~~spdg~~l~-sgs~dg~I~iwd~~ 643 (723)
.++|+|||+++++ + .++.|.+|++.. ++. +..+..... ...+..++|+|||++|+ ++..++.|.+|++.
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 8999999997776 4 678999999874 443 222221111 14588999999999885 55568999999997
Q ss_pred C-C--cEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECC-CcEEEE--ecCCCce
Q 004924 644 T-L--ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-GRVHVI--EPLESEV 700 (723)
Q Consensus 644 ~-~--~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D-g~v~iW--d~~~~~~ 700 (723)
. + +.+..+..+ ... +.+++|+| ++++|++++.+ +.|.+| |..+++.
T Consensus 271 ~~g~~~~~~~~~~~--------~~~--~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 271 ADGHLTLIQQISTE--------GDF--PRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp GGGCEEEEEEEECS--------SSC--CCEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred CCCcEEEeEEEecC--------CCC--cCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 3 3 333333211 222 34899999 89988888754 899999 5555553
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=4.4e-20 Score=189.26 Aligned_cols=231 Identities=10% Similarity=0.010 Sum_probs=170.0
Q ss_pred CCCCCeEEEEEe--CCEEEEEeCCcEEEEEcCC-CcEEEEEeCC-CCCeEEEEEcCCC-eEEEEEC--CC--cEEEEeCC
Q 004924 437 DPKDSISCFALR--GSHLFSASGGKISIFSLET-FQTLATFANP-PPIATYFILLPQD-LFAFGFD--DS--SILVHCPC 507 (723)
Q Consensus 437 ~h~~~V~~v~~s--~~~l~s~sdg~I~vwd~~~-~~~~~~~~~~-~~~v~~l~~~p~~-~l~sgs~--dg--~I~iwd~~ 507 (723)
.|...|.+++|+ ++++++++++.|.+||+.+ ++.......+ ...+.+++|+|++ .+++++. ++ .|..|+..
T Consensus 39 ~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~ 118 (297)
T 2ojh_A 39 QTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPST 118 (297)
T ss_dssp EESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETT
T ss_pred cCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECC
Confidence 377889999999 8899998899999999999 8777666555 3678899999999 8888883 33 55555656
Q ss_pred CCcEEEEEcCcCCcEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEE
Q 004924 508 TKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 586 (723)
Q Consensus 508 ~~~~~~~l~~~~~~i~~l~~spdg~~l~-s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~ 586 (723)
+++ ...+..+ ..+..++|+|+|+.++ +++.++.+++|+++... .....+. .+. ..+.+++|+|+|++++
T Consensus 119 ~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~-~~~---~~~~~~~~s~dg~~l~ 188 (297)
T 2ojh_A 119 GGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS----GVETRLT-HGE---GRNDGPDYSPDGRWIY 188 (297)
T ss_dssp CCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT----CCEEECC-CSS---SCEEEEEECTTSSEEE
T ss_pred CCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCC----CcceEcc-cCC---CccccceECCCCCEEE
Confidence 555 3444433 3488999999999877 77789999999864311 1112122 232 6799999999999888
Q ss_pred E-E-cCCcEEEEECC-CCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC-----------CcEEEEECCCCcEEEEee
Q 004924 587 S-I-HEGQIDVYEAP-TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----------GHVKVFDTSTLELRCQIN 652 (723)
Q Consensus 587 ~-s-~dg~I~vwd~~-~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d-----------g~I~iwd~~~~~~~~~~~ 652 (723)
+ + .++.+++|++. .+.....+. .+...+..++|+|+|++|++++.+ +.|++||+.+++......
T Consensus 189 ~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 266 (297)
T 2ojh_A 189 FNSSRTGQMQIWRVRVDGSSVERIT--DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD 266 (297)
T ss_dssp EEECTTSSCEEEEEETTSSCEEECC--CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE
T ss_pred EEecCCCCccEEEECCCCCCcEEEe--cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec
Confidence 6 4 58889999876 445555554 346778899999999999988766 569999999887644432
Q ss_pred cccccCCCCccCccceEEEEEecCCCCEEEEEECCC
Q 004924 653 LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 688 (723)
Q Consensus 653 ~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg 688 (723)
.. + +...+. +++|+| ++++|++++.|.
T Consensus 267 ~~-----~-~~~~~~--~~~~sp-dg~~l~~~~~~~ 293 (297)
T 2ojh_A 267 LF-----G-GQGTMN--SPNWSP-DGDEFAYVRYFP 293 (297)
T ss_dssp EE-----E-STTTSC--SCCBCT-TSSEEEEEEECC
T ss_pred cC-----C-CCcccc--cceECC-CCCEEEEEEecc
Confidence 11 1 133344 899999 899888887654
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=1.2e-18 Score=184.18 Aligned_cols=275 Identities=11% Similarity=0.040 Sum_probs=183.7
Q ss_pred CCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEEC---CCcEEEEeccCCcccccccceeeeeEEE
Q 004924 346 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---TATHKLWKWQSNKQSLEEENVNMESQLY 422 (723)
Q Consensus 346 dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~---dg~i~iWd~~~~~~~~g~~~~~~~~~~~ 422 (723)
++.+.+|.++.. .+.+..+.... +...+..++|+|||+ |++++. ++.|.+|++.++..
T Consensus 15 ~~~i~v~~~d~~--tg~~~~~~~~~--~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-------------- 75 (347)
T 3hfq_A 15 SQGIYQGTLDTT--AKTLTNDGLLA--ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-------------- 75 (347)
T ss_dssp CCEEEEEEEETT--TTEEEEEEEEE--ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE--------------
T ss_pred CCCEEEEEEcCC--CCeEEEeeeee--ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE--------------
Confidence 567888888742 34444433322 567788999999999 666554 68999999753221
Q ss_pred ecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEEcC-CC--cEEEEEeCC---------CCCeEEEEE
Q 004924 423 QPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLE-TF--QTLATFANP---------PPIATYFIL 486 (723)
Q Consensus 423 ~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s--dg~I~vwd~~-~~--~~~~~~~~~---------~~~v~~l~~ 486 (723)
..+.... .+...+..++|+ |++|++++ ++.|.+|++. ++ +.+..+... ...+.+++|
T Consensus 76 -----~~~~~~~--~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 148 (347)
T 3hfq_A 76 -----HKLNTVV--APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDL 148 (347)
T ss_dssp -----EEEEEEE--EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEE
T ss_pred -----EEeeeee--cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEE
Confidence 0011000 255667889999 88888877 6899999996 33 233333221 224888999
Q ss_pred cCCC-eEEEEECCCcEEEEeCC-CCcEEE--EEcC-cCCcEEEEEEcCCCCEEEE-EeCCCcEEEEeCCC--Cceeecee
Q 004924 487 LPQD-LFAFGFDDSSILVHCPC-TKKTKA--KLKG-HQNRITCLAYSLSLNVLVS-SGADAQLCVWDAVG--WKKLCSKF 558 (723)
Q Consensus 487 ~p~~-~l~sgs~dg~I~iwd~~-~~~~~~--~l~~-~~~~i~~l~~spdg~~l~s-~s~dg~I~vwd~~~--~~~~~~~~ 558 (723)
+|+| .++++..++.|.+|++. +++... .+.. ....+..++|+|||+++++ +..++.|.+|++.. ++......
T Consensus 149 spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~ 228 (347)
T 3hfq_A 149 TPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGI 228 (347)
T ss_dssp CTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred CCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeee
Confidence 9999 88887788999999998 554332 2222 2336788999999996665 45688999999874 43221112
Q ss_pred eeeeecCCCCCCCCeEEEEEccCCCEEEE-E-cCCcEEEEECCC-C--ceeEEecCCCCCCCeEEEEEeeCCcEEEEEeC
Q 004924 559 LHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPT-L--NHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 633 (723)
Q Consensus 559 l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~dg~I~vwd~~~-~--~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~ 633 (723)
+.....+.. ....+..++|+|||++|++ + .++.|.+||+.. + +.+..+.. +...+..++|+|||++|++++.
T Consensus 229 ~~~~~~~~~-~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~ 305 (347)
T 3hfq_A 229 VKTIPADYT-AHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST--EGDFPRDFDLDPTEAFVVVVNQ 305 (347)
T ss_dssp EESSCTTCC-SCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC--SSSCCCEEEECTTSSEEEEEET
T ss_pred eeecCCCCC-CCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec--CCCCcCeEEECCCCCEEEEEEc
Confidence 221111100 0034889999999998865 3 678999999973 2 34444432 3556789999999999988876
Q ss_pred C-CcEEEE--ECCCCcEEE
Q 004924 634 S-GHVKVF--DTSTLELRC 649 (723)
Q Consensus 634 d-g~I~iw--d~~~~~~~~ 649 (723)
+ +.|.+| |..+|++..
T Consensus 306 ~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 306 NTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp TTTEEEEEEECTTTCCEEE
T ss_pred CCCcEEEEEEeCCCCeEEe
Confidence 5 899999 556777653
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=8.7e-20 Score=213.11 Aligned_cols=321 Identities=10% Similarity=0.060 Sum_probs=212.1
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCC---ceEEEEEeCCCCEEEEEEC---------CCcEE
Q 004924 332 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG---RVVRLIYSHSGDFLVALTQ---------TATHK 399 (723)
Q Consensus 332 ~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~---~V~~l~fspdg~~las~s~---------dg~i~ 399 (723)
.++|||++++ .+.|++|++|++.+ +....+ +.+ |.. .|.+++|||||++|++++. ++.|+
T Consensus 22 ~~s~dg~~~~-~~~d~~i~~~~~~~----g~~~~~-~~~--~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~ 93 (719)
T 1z68_A 22 NWISGQEYLH-QSADNNIVLYNIET----GQSYTI-LSN--RTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY 93 (719)
T ss_dssp EESSSSEEEE-ECTTSCEEEEESSS----CCEEEE-ECH--HHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred EECCCCeEEE-EcCCCCEEEEEcCC----CcEEEE-Ecc--ccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence 4899996555 45699999999984 555544 222 322 4899999999999999886 67888
Q ss_pred EEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEeCCcEEEEEcCCCcEEEEEe-C
Q 004924 400 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFA-N 476 (723)
Q Consensus 400 iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~sdg~I~vwd~~~~~~~~~~~-~ 476 (723)
+||+.++ ..+... .....+.+++|+ |+.|+.+.++.|++|++.+++..+... +
T Consensus 94 ~~d~~~g---------------------~~~~~~---~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~ 149 (719)
T 1z68_A 94 IYDLSNG---------------------EFVRGN---ELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNG 149 (719)
T ss_dssp EEETTTT---------------------EECCSS---CCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCC
T ss_pred EEECCCC---------------------ccccce---ecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCC
Confidence 8886642 221000 122457889999 889999899999999999887654332 2
Q ss_pred CCCCe-----------------EEEEEcCCC-eEEEEECCC----------------------------------cEEEE
Q 004924 477 PPPIA-----------------TYFILLPQD-LFAFGFDDS----------------------------------SILVH 504 (723)
Q Consensus 477 ~~~~v-----------------~~l~~~p~~-~l~sgs~dg----------------------------------~I~iw 504 (723)
+...+ .+++|+||| .|++++.|. .|++|
T Consensus 150 ~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~ 229 (719)
T 1z68_A 150 RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII 229 (719)
T ss_dssp BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence 22222 489999999 888887552 78899
Q ss_pred eCCCCcEE---E-----EEcCcCCcEEEEEEcCCCCEEEEEeCCC----cEEEEe----CCCCceeeceeeeeeecCCCC
Q 004924 505 CPCTKKTK---A-----KLKGHQNRITCLAYSLSLNVLVSSGADA----QLCVWD----AVGWKKLCSKFLHSFQTGLVP 568 (723)
Q Consensus 505 d~~~~~~~---~-----~l~~~~~~i~~l~~spdg~~l~s~s~dg----~I~vwd----~~~~~~~~~~~l~~~~~~~~~ 568 (723)
|+.+++.. . .+.+|...+..++|+||++.+++....+ .|.+|| ..+++.... +.....++.
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~--~~~~~~~~~- 306 (719)
T 1z68_A 230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKT--QEHIEESRT- 306 (719)
T ss_dssp ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGG--GEEEEECSS-
T ss_pred ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEE--EecccccCC-
Confidence 99987642 1 1345788899999999987777644332 488899 776532211 100003343
Q ss_pred CCCCeE-----EEEEccCCCEEEE--E-cCC--cEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC----
Q 004924 569 ETTIVN-----HIQFHPDQIHLLS--I-HEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---- 634 (723)
Q Consensus 569 ~~~~v~-----~l~~spdg~~l~~--s-~dg--~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d---- 634 (723)
..+. .+.|+|||+.++. + .++ .|++||+.+++ ...+.. +...+..+.++ +++.|+..+.+
T Consensus 307 --~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~--~~~~v~~~~~~-d~~~i~~~~~~~~~~ 380 (719)
T 1z68_A 307 --GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITS--GKWEAINIFRV-TQDSLFYSSNEFEEY 380 (719)
T ss_dssp --SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSC--SSSCEEEEEEE-CSSEEEEEESCGGGC
T ss_pred --ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEeccc--CceEEEEEEEE-eCCEEEEEEecCCCC
Confidence 4455 7899999986654 3 444 68888887766 344432 35568888888 88877766654
Q ss_pred -CcEEEEECCC--CcE-EEEeecccccCCCCccCccceEEEEEecCCCCEEE-EEECC--CcEEEEecCCCce
Q 004924 635 -GHVKVFDTST--LEL-RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LGLTN--GRVHVIEPLESEV 700 (723)
Q Consensus 635 -g~I~iwd~~~--~~~-~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la-s~s~D--g~v~iWd~~~~~~ 700 (723)
+..++|.+.. +.. ...+... ..++ ...+. .+.|+| ++++++ +++.+ ..+.+||+.+++.
T Consensus 381 ~~~~~l~~~~~~~g~~~~~~l~~~---~~~~-~~~~~--~~~~s~-dg~~l~~~~s~~~~p~~~l~d~~~g~~ 446 (719)
T 1z68_A 381 PGRRNIYRISIGSYPPSKKCVTCH---LRKE-RCQYY--TASFSD-YAKYYALVCYGPGIPISTLHDGRTDQE 446 (719)
T ss_dssp TTCBEEEEEECSSSSCCEEESSTT---TTTT-TBCBE--EEEECG-GGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred CceEEEEEEeCCCCCCCceeccCc---cCCC-CCceE--EEEECC-CCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence 7888888764 421 2233210 0011 22233 789999 677665 44433 4788999988764
No 153
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.84 E-value=5.7e-19 Score=186.29 Aligned_cols=235 Identities=14% Similarity=0.033 Sum_probs=177.7
Q ss_pred CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCC-CCeEEEEEcCCC-eEE-EEECCCcEEEEeCCCCcEEEEEcCcC-----
Q 004924 449 GSHLFSAS-GGKISIFSLETFQTLATFANPP-PIATYFILLPQD-LFA-FGFDDSSILVHCPCTKKTKAKLKGHQ----- 519 (723)
Q Consensus 449 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~-~~v~~l~~~p~~-~l~-sgs~dg~I~iwd~~~~~~~~~l~~~~----- 519 (723)
+.++++++ +++|.+||+.+++.+..+..+. ..+..++|+|++ .++ ++..++.|.+||+.+++.+..+....
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~ 90 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEV 90 (349)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccc
Confidence 45677777 8999999999999988887543 256789999999 554 55578899999999998887776332
Q ss_pred -CcEEEEEEcCCCCEEEEEeCC------------CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEE
Q 004924 520 -NRITCLAYSLSLNVLVSSGAD------------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 586 (723)
Q Consensus 520 -~~i~~l~~spdg~~l~s~s~d------------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~ 586 (723)
..+.+++|+|+|+++++++.+ +.|.+||+.+++... .+.... .. ..+.+++|+|+|+ ++
T Consensus 91 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--~~~~~~-~~----~~~~~~~~s~dg~-l~ 162 (349)
T 1jmx_B 91 GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK--PVRTFP-MP----RQVYLMRAADDGS-LY 162 (349)
T ss_dssp EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC--CSEEEE-CC----SSCCCEEECTTSC-EE
T ss_pred cccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccc--eeeecc-CC----CcccceeECCCCc-EE
Confidence 237789999999999998865 899999998754322 122111 11 4588899999999 55
Q ss_pred EEcCCcEEEEECCCCceeEEecCCC-------------------------------------------------------
Q 004924 587 SIHEGQIDVYEAPTLNHTSQLVPDK------------------------------------------------------- 611 (723)
Q Consensus 587 ~s~dg~I~vwd~~~~~~~~~~~~~~------------------------------------------------------- 611 (723)
++ ++.|++||..+++.+..+....
T Consensus 163 ~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 241 (349)
T 1jmx_B 163 VA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 241 (349)
T ss_dssp EE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred Ec-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEecc
Confidence 54 3459999999988776654321
Q ss_pred -----------CCCCeEEEEEee-CCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCC
Q 004924 612 -----------MDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 679 (723)
Q Consensus 612 -----------h~~~v~~l~~sp-dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~ 679 (723)
+...+..++|+| +|++++++ ++.|++||+.+++.+..+.. ..... +++|+| +++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---------~~~~~--~~~~s~-dg~ 307 (349)
T 1jmx_B 242 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL---------DHTYY--CVAFDK-KGD 307 (349)
T ss_dssp TCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC---------SSCCC--EEEECS-SSS
T ss_pred CCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC---------CCCcc--ceEECC-CCC
Confidence 011345677889 99999988 89999999999998777652 22234 899999 888
Q ss_pred EEEEEECCCcEEEEecCCCceeeecCC
Q 004924 680 RIALGLTNGRVHVIEPLESEVEWGKLP 706 (723)
Q Consensus 680 ~las~s~Dg~v~iWd~~~~~~~w~~~~ 706 (723)
+|++++.++.|++||+.+++.....+.
T Consensus 308 ~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 308 KLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp CEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEecCCCeEEEEeccccceeeeeec
Confidence 888888899999999999887655543
No 154
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.83 E-value=4.8e-19 Score=206.33 Aligned_cols=288 Identities=13% Similarity=0.099 Sum_probs=193.4
Q ss_pred ceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCC-------CeeeeeccCCCCCCCeEEEEEe
Q 004924 376 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS-------KLVMTNDIAADPKDSISCFALR 448 (723)
Q Consensus 376 ~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~~h~~~V~~v~~s 448 (723)
.+..+.|+ |..+++++.|+ | +||..++... . .. +.+... ..-.. ..+...|.+++|+
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~-~--~~-----l~~~~~~~~~l~~~~~~~----~~~~~~v~~~~~s 90 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSA-Q--TT-----RFSAADLNALMPEGCKFQ----TTDAFPSFRTLDA 90 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTE-E-EEEC----------CE-----EEEHHHHHTTC---------------CCCEEEEET
T ss_pred cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEe-e--EE-----eechhHhhhhccchhccc----cccccCceeEEEC
Confidence 45557888 66678888888 8 9998743220 0 10 011100 00000 0123679999999
Q ss_pred -CCEEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCC-----CcEEEEEcCcCCc
Q 004924 449 -GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-----KKTKAKLKGHQNR 521 (723)
Q Consensus 449 -~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~-----~~~~~~l~~~~~~ 521 (723)
++.++.+.++.|++||+.+++... +..+...+.+++|+||| .|+++ .++.|++||+.+ ++.......+...
T Consensus 91 pd~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~ 168 (706)
T 2z3z_A 91 GRGLVVLFTQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTET 168 (706)
T ss_dssp TTTEEEEEETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTT
T ss_pred CCCeEEEEECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCC
Confidence 777777779999999999886654 44556678889999999 88885 689999999998 8776554444333
Q ss_pred --------------EEEEEEcCCCCEEEEEe---------------------------------CCCcEEEEeCCCCcee
Q 004924 522 --------------ITCLAYSLSLNVLVSSG---------------------------------ADAQLCVWDAVGWKKL 554 (723)
Q Consensus 522 --------------i~~l~~spdg~~l~s~s---------------------------------~dg~I~vwd~~~~~~~ 554 (723)
+.++.|+|||++|++++ .+..|++||+.+++..
T Consensus 169 ~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~ 248 (706)
T 2z3z_A 169 LVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV 248 (706)
T ss_dssp EEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE
T ss_pred eEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE
Confidence 47899999999999987 4467999999986431
Q ss_pred eceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCC-----cEEEEECCCCceeEEecCCCCC---CCeEEEEEee--
Q 004924 555 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG-----QIDVYEAPTLNHTSQLVPDKMD---LPITYATYSC-- 623 (723)
Q Consensus 555 ~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg-----~I~vwd~~~~~~~~~~~~~~h~---~~v~~l~~sp-- 623 (723)
. +. ....+. ..+.+++|+|||+.|++ +.++ .|++||+.+++....+....+. ..+.+++|+|
T Consensus 249 ~---~~-~~~~~~---~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~ 321 (706)
T 2z3z_A 249 Y---LQ-TGEPKE---KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGS 321 (706)
T ss_dssp E---CC-CCSCTT---CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTC
T ss_pred e---ec-cCCCCc---eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCC
Confidence 1 11 112333 57899999999999887 4554 8999999998443333221122 2346789999
Q ss_pred CCcEEEEEeCCCcEEEEECC-CCcEEEEeecccccCCCCccCccceEE-EEEecCCCCEEEEEEC-CC----cEEEEecC
Q 004924 624 DGKCIYVSCKSGHVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLV-IAAHPLEPNRIALGLT-NG----RVHVIEPL 696 (723)
Q Consensus 624 dg~~l~sgs~dg~I~iwd~~-~~~~~~~~~~~~~~~~g~~~~~v~~~~-v~~sp~d~~~las~s~-Dg----~v~iWd~~ 696 (723)
||+++++++.||.+++|.+. ++.....+..+ ... +.. ++|+| +++.|+.++. ++ .|..|++.
T Consensus 322 dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~--------~~~--v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~ 390 (706)
T 2z3z_A 322 NNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG--------EWE--VTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIK 390 (706)
T ss_dssp SSEEEEEECTTSSCEEEEEETTSCEEEECCCS--------SSC--EEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETT
T ss_pred CCEEEEEEccCCccEEEEEECCCCEEEecCCC--------CeE--EEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcC
Confidence 99999999999999999876 56666665421 222 224 79999 7887765554 44 66777776
Q ss_pred CCc
Q 004924 697 ESE 699 (723)
Q Consensus 697 ~~~ 699 (723)
+++
T Consensus 391 ~~~ 393 (706)
T 2z3z_A 391 GGK 393 (706)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=2.1e-19 Score=204.45 Aligned_cols=267 Identities=9% Similarity=0.019 Sum_probs=187.1
Q ss_pred CCCceEEEEEeCCCCEEEEEEC-CCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CC
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GS 450 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~-dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~ 450 (723)
+..+|++++|+|||++||+++. ||+++||++.++. ..+.. .++...+.+++|+ ++
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~---------------------~~~lt--~~~~~~~~~~~~spd~ 76 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE---------------------TVKLN--REPINSVLDPHYGVGR 76 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE---------------------EEECC--SSCCSEECEECTTCSE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCC---------------------cEeee--cccccccccccCCCCe
Confidence 3568999999999999999987 9999999964321 11111 1233578899999 75
Q ss_pred EEEEEeC----CcEEEEEcCC---CcEEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEEEEEcCcCCc
Q 004924 451 HLFSASG----GKISIFSLET---FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 521 (723)
Q Consensus 451 ~l~s~sd----g~I~vwd~~~---~~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~ 521 (723)
.+++++. ....+|.+.. +... .+... ..+...+|+|+| .+++.+.++.+.+||+.+++.......+ .
T Consensus 77 ~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~- 152 (582)
T 3o4h_A 77 VILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G- 152 (582)
T ss_dssp EEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S-
T ss_pred EEEEeccCCCCcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C-
Confidence 5555542 4456665533 3322 33322 234466888888 4444445555669999988766555433 3
Q ss_pred EEEEEEcCCCCEEEEEeCC----CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCC--cEE
Q 004924 522 ITCLAYSLSLNVLVSSGAD----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--QID 594 (723)
Q Consensus 522 i~~l~~spdg~~l~s~s~d----g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg--~I~ 594 (723)
.+++|+|||+.+++++.+ +.|++||+.+++. ..+ ..+. ..+.+++|||||+.|+++ .++ .|+
T Consensus 153 -~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~------~~l-~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~i~ 221 (582)
T 3o4h_A 153 -FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL------RVF-DSGE---GSFSSASISPGMKVTAGLETAREARLV 221 (582)
T ss_dssp -CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC------EEE-CCSS---CEEEEEEECTTSCEEEEEECSSCEEEE
T ss_pred -ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc------eEe-ecCC---CccccceECCCCCEEEEccCCCeeEEE
Confidence 789999999999988877 7899999988643 112 2333 678999999999999974 667 899
Q ss_pred EEECCCCceeEEecCCCCCCCeEEEE--------EeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCcc
Q 004924 595 VYEAPTLNHTSQLVPDKMDLPITYAT--------YSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 666 (723)
Q Consensus 595 vwd~~~~~~~~~~~~~~h~~~v~~l~--------~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v 666 (723)
+||+.+++.. .+. .|...+..++ |+|||.++++++.||.+++|++ |+..... .+.+
T Consensus 222 ~~d~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~-----------~~~v 285 (582)
T 3o4h_A 222 TVDPRDGSVE-DLE--LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP-----------QGNH 285 (582)
T ss_dssp EECTTTCCEE-ECC--CSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC-----------SSEE
T ss_pred EEcCCCCcEE-Ecc--CCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC-----------CCce
Confidence 9999988876 433 3455555566 9999998999999999999999 6554311 2234
Q ss_pred ceEEEEEecCCCCEEEEEECCC---cEEEEecCC
Q 004924 667 YPLVIAAHPLEPNRIALGLTNG---RVHVIEPLE 697 (723)
Q Consensus 667 ~~~~v~~sp~d~~~las~s~Dg---~v~iWd~~~ 697 (723)
. +++|+ ++.++++++.+. .+.+|+...
T Consensus 286 ~--~~~~s--dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 286 G--RVVLW--RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp E--EEEEE--TTEEEEEEEETTEEEEEEEETTCC
T ss_pred E--EEEec--CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 4 88888 578888888774 466777643
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=6.2e-19 Score=200.60 Aligned_cols=260 Identities=11% Similarity=0.022 Sum_probs=186.6
Q ss_pred cCCCCCEEEEEeC-CCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEEC---CCcEEEEeccCCcc
Q 004924 333 SLPDADSAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---TATHKLWKWQSNKQ 408 (723)
Q Consensus 333 ~spdg~~la~~s~-dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~---dg~i~iWd~~~~~~ 408 (723)
++|||+.||+++. ||+++||++. .+..+++. . .+...|..++|||| +.+++++. +...++|.+..
T Consensus 29 ~~~DG~~la~~s~~~g~~~lw~~~----~g~~~~lt--~-~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~--- 97 (582)
T 3o4h_A 29 GVVDGDKLLVVGFSEGSVNAYLYD----GGETVKLN--R-EPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT--- 97 (582)
T ss_dssp EEETTTEEEEEEEETTEEEEEEEE----TTEEEECC--S-SCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET---
T ss_pred cCCCCCeEEEEEccCCceeEEEEc----CCCcEeee--c-ccccccccccCCCC-eEEEEeccCCCCcceEEEEEec---
Confidence 8999999999987 9999999986 45555553 2 13368999999999 77777765 45667776542
Q ss_pred cccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC--EEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEE
Q 004924 409 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS--HLFSASGGKISIFSLETFQTLATFANPPPIATYF 484 (723)
Q Consensus 409 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~--~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l 484 (723)
|+ ..+.. ... ....+...+|+ |+ .+++++++.+.+||+.+++.......+. .++
T Consensus 98 -------------~~-~g~~~-~l~----~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~ 155 (582)
T 3o4h_A 98 -------------SR-PGEEQ-RLE----AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGF 155 (582)
T ss_dssp -------------TS-TTCCE-ECT----TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEE
T ss_pred -------------cC-CCccc-ccc----CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceE
Confidence 10 11111 100 11223344555 43 3444446666699999887765554433 689
Q ss_pred EEcCCC-eEEEEECC----CcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCceeece
Q 004924 485 ILLPQD-LFAFGFDD----SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA--QLCVWDAVGWKKLCSK 557 (723)
Q Consensus 485 ~~~p~~-~l~sgs~d----g~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg--~I~vwd~~~~~~~~~~ 557 (723)
+|+||| .+++++.+ +.|++||+.+++.. .+..|...+..++|+|||+.|+++..++ .|++||+.+++..
T Consensus 156 ~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~--- 231 (582)
T 3o4h_A 156 VSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE--- 231 (582)
T ss_dssp EEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE---
T ss_pred EECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE---
Confidence 999999 88877776 78999999988765 6778888999999999999999888888 8999999986432
Q ss_pred eeeeeecCCCCCCCCeEEEE--------EccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEE
Q 004924 558 FLHSFQTGLVPETTIVNHIQ--------FHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCI 628 (723)
Q Consensus 558 ~l~~~~~~~~~~~~~v~~l~--------~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l 628 (723)
+..++. ..+..++ |+|||..+++ +.++.+++|++ ++.... ....+.+++|+ +++++
T Consensus 232 ----~~~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~-----~~~~v~~~~~s-dg~~l 296 (582)
T 3o4h_A 232 ----DLELPS---KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA-----PQGNHGRVVLW-RGKLV 296 (582)
T ss_dssp ----ECCCSC---SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC-----CSSEEEEEEEE-TTEEE
T ss_pred ----EccCCC---cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc-----CCCceEEEEec-CCEEE
Confidence 122332 3455555 9999977776 58899999999 665441 24678899999 99999
Q ss_pred EEEeCCC---cEEEEECCC
Q 004924 629 YVSCKSG---HVKVFDTST 644 (723)
Q Consensus 629 ~sgs~dg---~I~iwd~~~ 644 (723)
++++.+. .+++|+..+
T Consensus 297 ~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 297 TSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEETTEEEEEEEETTCC
T ss_pred EEEcCCCCCCeEEEEcCCC
Confidence 9888774 477777654
No 157
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=7.9e-18 Score=180.72 Aligned_cols=296 Identities=12% Similarity=0.033 Sum_probs=189.6
Q ss_pred CCCceEE-----EEEeCCCCEEEEEEC-CCc--EEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEE
Q 004924 373 FGGRVVR-----LIYSHSGDFLVALTQ-TAT--HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC 444 (723)
Q Consensus 373 h~~~V~~-----l~fspdg~~las~s~-dg~--i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 444 (723)
|...... .+|||||++|+.++. +|. |.+||.. ++....... ++...+..
T Consensus 29 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~---------------------~g~~~~lt~--~~~~~~~~ 85 (388)
T 3pe7_A 29 PDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLN---------------------TQVATQLTE--GRGDNTFG 85 (388)
T ss_dssp TTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETT---------------------TCEEEECCC--SSCBCSSS
T ss_pred CcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCC---------------------CCceEEeee--CCCCCccc
Confidence 5555555 889999999999988 675 4444443 333333221 34444546
Q ss_pred EEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEE--EcCCC-eEEEE----------------------E
Q 004924 445 FALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI--LLPQD-LFAFG----------------------F 496 (723)
Q Consensus 445 v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~--~~p~~-~l~sg----------------------s 496 (723)
+.|+ |+.|+.++ ++.|.+||+.+++....+..+...+.... ++|++ .++.. .
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 86 GFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred eEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence 7799 88999988 88999999999988777776666554444 48888 66532 2
Q ss_pred CCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcC-CCCEEEEEeCC------CcEEEEeCCCCceeeceeeeeeecCCCCC
Q 004924 497 DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPE 569 (723)
Q Consensus 497 ~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~sp-dg~~l~s~s~d------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~ 569 (723)
.++.|++||+.+++... +..+...+..+.|+| ||+.|+.++.+ ..|.++|..++.. ..+......
T Consensus 166 ~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~------~~l~~~~~~- 237 (388)
T 3pe7_A 166 PCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM------RKVKTHAEG- 237 (388)
T ss_dssp CCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC------EESCCCCTT-
T ss_pred CcceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce------EEeeeCCCC-
Confidence 34689999999987544 444667799999999 99998887763 3788888876421 212222210
Q ss_pred CCCeEEEEEccCCCEEEE-E-cCC----cEEEEECCCCceeEEecCCCCCC---CeEEEEEeeCCcEEEEE---------
Q 004924 570 TTIVNHIQFHPDQIHLLS-I-HEG----QIDVYEAPTLNHTSQLVPDKMDL---PITYATYSCDGKCIYVS--------- 631 (723)
Q Consensus 570 ~~~v~~l~~spdg~~l~~-s-~dg----~I~vwd~~~~~~~~~~~~~~h~~---~v~~l~~spdg~~l~sg--------- 631 (723)
..+...+|+|||+.|+. + .++ .|++||+.+++.........+.. .....+|+|||+.|+..
T Consensus 238 -~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 316 (388)
T 3pe7_A 238 -ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKI 316 (388)
T ss_dssp -EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------
T ss_pred -cccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecccccc
Confidence 24778899999998765 4 222 39999999887533222111000 01123799999988854
Q ss_pred eCCCcEEEEECCCCcEEEEeecccccCC-CCccCccceEEEEEecCCCCEEEEEE-CCCcEEEEecCCCceee
Q 004924 632 CKSGHVKVFDTSTLELRCQINLTAYAQP-GTISLELYPLVIAAHPLEPNRIALGL-TNGRVHVIEPLESEVEW 702 (723)
Q Consensus 632 s~dg~I~iwd~~~~~~~~~~~~~~~~~~-g~~~~~v~~~~v~~sp~d~~~las~s-~Dg~v~iWd~~~~~~~w 702 (723)
..+..|++||+.+++... +..+..... -.......+.+++|+| ||+.|+.++ .+|...||.+.-....|
T Consensus 317 ~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~sp-Dg~~l~~~s~~~g~~~l~~~~l~~~~~ 387 (388)
T 3pe7_A 317 ENDPFLYVFNMKNGTQHR-VARHDTSWKVFEGDRQVTHPHPSFTP-DDKQILFTSDVHGKPALYLATLPESVW 387 (388)
T ss_dssp CCCCEEEEEETTTTEEEE-EEECCCCCCCBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEEECCGGGG
T ss_pred CCCCEEEEEeccCCceEE-eccccCcccccccccccCCCCccCCC-CCCEEEEEecCCCceeEEEEECChhcc
Confidence 456789999999987543 332210000 0000001234789999 888887666 57778888776554443
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.81 E-value=2.8e-18 Score=180.95 Aligned_cols=245 Identities=11% Similarity=0.071 Sum_probs=176.9
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEE-
Q 004924 379 RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA- 455 (723)
Q Consensus 379 ~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~- 455 (723)
.+++++++.++++++.+++|.+||..++.. ...... +....+..++|+ +++++++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---------------------~~~~~~-~~~~~~~~~~~s~dg~~~~v~~ 61 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV---------------------YKSCVM-PDKFGPGTAMMAPDNRTAYVLN 61 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEE---------------------EEEEEC-SSCCSSCEEEECTTSSEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcE---------------------EEEEec-CCCCCCceeEECCCCCEEEEEe
Confidence 457788999999999999999999764321 111110 122246788999 6665544
Q ss_pred e-CCcEEEEEcCCCcEEEEEeCCC------CCeEEEEEcCCC-eEEEEECC------------CcEEEEeCCCCcE---E
Q 004924 456 S-GGKISIFSLETFQTLATFANPP------PIATYFILLPQD-LFAFGFDD------------SSILVHCPCTKKT---K 512 (723)
Q Consensus 456 s-dg~I~vwd~~~~~~~~~~~~~~------~~v~~l~~~p~~-~l~sgs~d------------g~I~iwd~~~~~~---~ 512 (723)
. ++.|.+||+.+++....+..+. ..+.+++|+|+| .+++++.+ +.|.+||+.+++. +
T Consensus 62 ~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 141 (349)
T 1jmx_B 62 NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV 141 (349)
T ss_dssp TTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS
T ss_pred CCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee
Confidence 4 7899999999998887776432 236789999999 88888765 8999999988543 3
Q ss_pred EEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeee-----------------------------ee
Q 004924 513 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-----------------------------FQ 563 (723)
Q Consensus 513 ~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~-----------------------------~~ 563 (723)
..+. +...+.+++|+|+|+ +++++ +.|.+||..+++......... +.
T Consensus 142 ~~~~-~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (349)
T 1jmx_B 142 RTFP-MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 217 (349)
T ss_dssp EEEE-CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred eecc-CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeee
Confidence 4444 334688999999999 65554 349999998875433211110 00
Q ss_pred cC---------------------CC---------CCCCCeEEEEEcc-CCCEEEEEcCCcEEEEECCCCceeEEecCCCC
Q 004924 564 TG---------------------LV---------PETTIVNHIQFHP-DQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKM 612 (723)
Q Consensus 564 ~~---------------------~~---------~~~~~v~~l~~sp-dg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h 612 (723)
.. .. +....+.+++|+| +|++++++ ++.|++||+.+++.+..+..
T Consensus 218 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~--- 293 (349)
T 1jmx_B 218 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL--- 293 (349)
T ss_dssp EC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC---
T ss_pred ecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC---
Confidence 00 00 0002456788899 99999988 89999999999998777753
Q ss_pred CCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeec
Q 004924 613 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 653 (723)
Q Consensus 613 ~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 653 (723)
...+.+++|+|+|++|++++.++.|++||..+++.+..+..
T Consensus 294 ~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 294 DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence 34567899999999999888899999999999998888764
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.80 E-value=1.2e-16 Score=169.91 Aligned_cols=248 Identities=14% Similarity=0.114 Sum_probs=164.6
Q ss_pred CCCCeEEEEEe--CCEEEEEe-C----CcEEEEEcCC--CcE--EEEEeCCCCCeEEEEEcCCC-eEEEEE-CCCcEEEE
Q 004924 438 PKDSISCFALR--GSHLFSAS-G----GKISIFSLET--FQT--LATFANPPPIATYFILLPQD-LFAFGF-DDSSILVH 504 (723)
Q Consensus 438 h~~~V~~v~~s--~~~l~s~s-d----g~I~vwd~~~--~~~--~~~~~~~~~~v~~l~~~p~~-~l~sgs-~dg~I~iw 504 (723)
+...+..++|+ |++|++++ + +.|.+|++.. ++. +.....+......+++ ++ .+++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 44556778999 88888888 5 7999998865 433 3334445566777887 67 666555 68899999
Q ss_pred eCCCCcEEEE------EcC--------cCCcEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCce------eece-eeeee
Q 004924 505 CPCTKKTKAK------LKG--------HQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKK------LCSK-FLHSF 562 (723)
Q Consensus 505 d~~~~~~~~~------l~~--------~~~~i~~l~~spdg~~l~s~s-~dg~I~vwd~~~~~~------~~~~-~l~~~ 562 (723)
++.....+.. ..+ +...+.+++|+|+|+++++++ .++.|.+|++..... .... .....
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 9875432211 111 123468899999999776655 488999999876431 1110 00111
Q ss_pred ecCCCCCCCCeEEEEEccCCCEEEE-E-cCCcEEEEECCCCce--eEEecC-CCCCCCeEEEEEeeCCcEEEEEeCC--C
Q 004924 563 QTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNH--TSQLVP-DKMDLPITYATYSCDGKCIYVSCKS--G 635 (723)
Q Consensus 563 ~~~~~~~~~~v~~l~~spdg~~l~~-s-~dg~I~vwd~~~~~~--~~~~~~-~~h~~~v~~l~~spdg~~l~sgs~d--g 635 (723)
..... ..+..++|+|||+++++ + .++.|.+||+.+++. +..+.. ..+......++|+|||++|+++..+ +
T Consensus 206 ~~~~~---~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~ 282 (361)
T 3scy_A 206 KVAPG---SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD 282 (361)
T ss_dssp ECCTT---CCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC
T ss_pred ecCCC---CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC
Confidence 11222 56789999999998887 4 588999999987754 222221 1234557899999999999776654 8
Q ss_pred cEEEEECC--CCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEE-CCCcEEEEec--CCCce
Q 004924 636 HVKVFDTS--TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVHVIEP--LESEV 700 (723)
Q Consensus 636 ~I~iwd~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s-~Dg~v~iWd~--~~~~~ 700 (723)
.|.+|++. +++........ ... .+.+++|+| ++++|++++ .++.|.+|++ .+++.
T Consensus 283 ~i~v~~~~~~~g~~~~~~~~~-------~g~--~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 283 GVAIFKVDETNGTLTKVGYQL-------TGI--HPRNFIITP-NGKYLLVACRDTNVIQIFERDQATGLL 342 (361)
T ss_dssp EEEEEEECTTTCCEEEEEEEE-------CSS--CCCEEEECT-TSCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEEEEEEcCCCCcEEEeeEec-------CCC--CCceEEECC-CCCEEEEEECCCCCEEEEEEECCCCcE
Confidence 99999985 45532221111 011 234899999 899888887 6789999655 45553
No 160
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.80 E-value=4.4e-17 Score=177.81 Aligned_cols=249 Identities=8% Similarity=0.023 Sum_probs=166.1
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeecccCC-------CCceeEEecCC--CCCCCceEEEEEeCCCCEEE----EEECCCcE
Q 004924 332 TSLPDADSAVCAKSLEKSVNLKLQLINE-------PSECRTLLLPD--NSFGGRVVRLIYSHSGDFLV----ALTQTATH 398 (723)
Q Consensus 332 ~~spdg~~la~~s~dg~v~iw~~~~~~~-------~~~~~~~~l~~--~~h~~~V~~l~fspdg~~la----s~s~dg~i 398 (723)
..++++.++++++.++ +++|+...... ....... .+. ..|...|.+++|+|+|++|+ +|+.|++|
T Consensus 43 avs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v 120 (434)
T 2oit_A 43 AVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDK-VQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSII 120 (434)
T ss_dssp EEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEEC-CCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEE
T ss_pred EEecCCCEEEEECCCE-EEEEEchHhhhhcccccCccccccc-CccccccCCCcccEEEEcCCCCEEEEEEeccCCCceE
Confidence 3788899999999887 88887653110 0011100 000 11567899999999999999 78889999
Q ss_pred EEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCcEEEEE
Q 004924 399 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATF 474 (723)
Q Consensus 399 ~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~ 474 (723)
+|||+.+...........+ .... ...+|...|.+++|+ +.+|++++ ||+|++||+.++......
T Consensus 121 ~iwd~~~~~~~~~~~~~~~----------~~~~--~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~ 188 (434)
T 2oit_A 121 AFFDVRTFSNEAKQQKRPF----------AYHK--LLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT 188 (434)
T ss_dssp EEEEHHHHHCTTCSSCCCS----------EEEE--CCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE
T ss_pred EEEEccccccCCcCCccee----------eeee--ccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec
Confidence 9999874210000000000 0011 112689999999999 57899999 999999999998777777
Q ss_pred eCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCc-------CCcEEEEEEcCCCCEEEEE-eCCC----
Q 004924 475 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-------QNRITCLAYSLSLNVLVSS-GADA---- 541 (723)
Q Consensus 475 ~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~-------~~~i~~l~~spdg~~l~s~-s~dg---- 541 (723)
.+|...|++++|+|+| +|++|+.||.|++||++ ++....+..| ...|.++.|++++.++++. +.||
T Consensus 189 ~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~ 267 (434)
T 2oit_A 189 LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLET 267 (434)
T ss_dssp ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSS
T ss_pred cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCC
Confidence 7888999999999999 99999999999999998 6666666543 2389999999988776543 3443
Q ss_pred --cEEEEeCCCCceeeceeeeeeec------CCCCCCCCeEEEEEccCCCEEEE-E-cCCcEEEEEC
Q 004924 542 --QLCVWDAVGWKKLCSKFLHSFQT------GLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEA 598 (723)
Q Consensus 542 --~I~vwd~~~~~~~~~~~l~~~~~------~~~~~~~~v~~l~~spdg~~l~~-s-~dg~I~vwd~ 598 (723)
.+++|++.............+.. +.. .+...+..-++.+++++ + ..+.|.++..
T Consensus 268 ~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r---~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 268 SPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTER---QHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp CCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSS---CCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred CCceEEEEeccCCCCCCcceEecccCCCCCCCCc---CcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 38999998642111111111110 111 22334444577777776 3 4455666654
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.79 E-value=4.2e-17 Score=190.86 Aligned_cols=328 Identities=9% Similarity=0.065 Sum_probs=205.1
Q ss_pred ccCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCC-----ceEEEEEeCCCCEEEEEECCCcEEEEeccCC
Q 004924 332 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG-----RVVRLIYSHSGDFLVALTQTATHKLWKWQSN 406 (723)
Q Consensus 332 ~~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~-----~V~~l~fspdg~~las~s~dg~i~iWd~~~~ 406 (723)
.++|||++++++ |++|++|++.+ +.+..+ +.+ |.. ....++|||||++|++++.+++++ ...
T Consensus 23 ~w~~dg~~~~~~--~~~i~~~~~~~----~~~~~~-~~~--~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~--r~~-- 89 (740)
T 4a5s_A 23 RWISDHEYLYKQ--ENNILVFNAEY----GNSSVF-LEN--STFDEFGHSINDYSISPDGQFILLEYNYVKQW--RHS-- 89 (740)
T ss_dssp EECSSSEEEEEE--TTEEEEEETTT----CCEEEE-ECT--TTTTTCCSCCCEEEECTTSSEEEEEEEEEECS--SSC--
T ss_pred EECCCCcEEEEc--CCcEEEEECCC----CceEEE-Eec--hhhhhhcccccceEECCCCCEEEEEECCeeeE--EEc--
Confidence 499999999886 99999999984 555544 444 432 234588999999999998764331 100
Q ss_pred cccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEeCCcEEEEEcCCCcEEEEEe-CCCCCe--
Q 004924 407 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFA-NPPPIA-- 481 (723)
Q Consensus 407 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~sdg~I~vwd~~~~~~~~~~~-~~~~~v-- 481 (723)
......+||..++.+... ..|...+..++|| |+.||.+.++.|.+|++.+++..+... ++...+
T Consensus 90 --------~~~~~~~~d~~~~~~~~l---~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~ 158 (740)
T 4a5s_A 90 --------YTASYDIYDLNKRQLITE---ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYN 158 (740)
T ss_dssp --------EEEEEEEEETTTTEECCS---SCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEE
T ss_pred --------cceEEEEEECCCCcEEEc---ccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceec
Confidence 000122344555544331 1467789999999 889999999999999998887554221 222222
Q ss_pred ---------------EEEEEcCCC-eEEEEECCC------------------------------------cEEEEeCCC-
Q 004924 482 ---------------TYFILLPQD-LFAFGFDDS------------------------------------SILVHCPCT- 508 (723)
Q Consensus 482 ---------------~~l~~~p~~-~l~sgs~dg------------------------------------~I~iwd~~~- 508 (723)
..+.|+||| .||.++.|. .|++||+.+
T Consensus 159 g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~ 238 (740)
T 4a5s_A 159 GITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSL 238 (740)
T ss_dssp SBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSC
T ss_pred CcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCC
Confidence 348999999 888775322 488899988
Q ss_pred --Cc--EEEEEc------CcCCcEEEEEEcCCCCEEEEEeC----CCcEEEEeCCCCc----eeeceeeeeeecCCCCCC
Q 004924 509 --KK--TKAKLK------GHQNRITCLAYSLSLNVLVSSGA----DAQLCVWDAVGWK----KLCSKFLHSFQTGLVPET 570 (723)
Q Consensus 509 --~~--~~~~l~------~~~~~i~~l~~spdg~~l~s~s~----dg~I~vwd~~~~~----~~~~~~l~~~~~~~~~~~ 570 (723)
++ ....+. +|...+..++|+|||+.++.... +..|++||+.+|+ +.....+ +...+.
T Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l--~~~~~~--- 313 (740)
T 4a5s_A 239 SSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQH--IEMSTT--- 313 (740)
T ss_dssp CSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCE--EEECSS---
T ss_pred CCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEe--eeccCC---
Confidence 73 233343 37788999999999997665543 2369999999875 2111111 112232
Q ss_pred CCe-----EEEEEccCCCEEE-E-E-cCC--cEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC-----C
Q 004924 571 TIV-----NHIQFHPDQIHLL-S-I-HEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----G 635 (723)
Q Consensus 571 ~~v-----~~l~~spdg~~l~-~-s-~dg--~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d-----g 635 (723)
..+ ...+|+|||+.++ . + .+| .|++||..+++.. .+.. ....+..+. ++|++.|+..+.. +
T Consensus 314 ~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~--g~~~v~~~~-~~d~~~i~f~~~~~~~~~~ 389 (740)
T 4a5s_A 314 GWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITK--GTWEVIGIE-ALTSDYLYYISNEYKGMPG 389 (740)
T ss_dssp SCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCC--SSSCEEEEE-EECSSEEEEEESCGGGCTT
T ss_pred ceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-eccc--CCEEEEEEE-EEeCCEEEEEEecCCCCCc
Confidence 333 3788999999877 4 4 333 6899999776654 3432 245565543 3557666644432 3
Q ss_pred --cEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECC---CcEEEEecCCCc
Q 004924 636 --HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN---GRVHVIEPLESE 699 (723)
Q Consensus 636 --~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D---g~v~iWd~~~~~ 699 (723)
.|+..++..+.....+.... .+ ...... .+.|+| ++++++..... ..+.+++..+++
T Consensus 390 ~~~ly~v~~~g~~~~~~lt~~~---~~-~~~~~~--~~~~S~-dg~~~~~~~s~~~~p~~~l~~~~~~~ 451 (740)
T 4a5s_A 390 GRNLYKIQLIDYTKVTCLSCEL---NP-ERCQYY--SVSFSK-EAKYYQLRCSGPGLPLYTLHSSVNDK 451 (740)
T ss_dssp CBEEEEEETTEEEEEEESSTTT---ST-TTBCBE--EEEECT-TSSEEEEEECSBSSCEEEEEETTTTE
T ss_pred eeEEEEEECCCCCcceeecccc---CC-CCCceE--EEEECC-CCCEEEEEeCCCCCCEEEEEECCCCc
Confidence 45555555544332333110 01 112233 899999 78876654433 367778877654
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.78 E-value=1.5e-16 Score=169.71 Aligned_cols=282 Identities=7% Similarity=0.009 Sum_probs=180.1
Q ss_pred EEEEeCC--CeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEecc-CCccccccccee
Q 004924 340 AVCAKSL--EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ-SNKQSLEEENVN 416 (723)
Q Consensus 340 la~~s~d--g~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~-~~~~~~g~~~~~ 416 (723)
+++|+.. +.|.+|+++.. .+.+..+......+...+..++|+|||++|++++.+ .|.+|++. ++.. ..
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~--~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~-----~~- 75 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDE--KLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI-----VH- 75 (365)
T ss_dssp EEEEESSSSCEEEEEEEETT--TTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE-----EE-
T ss_pred EEEEEccCCCcEEEEEEECC--CCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE-----EE-
Confidence 4455543 56888877532 344433321000134578899999999999999888 99999975 2211 00
Q ss_pred eeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCE--EEEE--------------eCCcEEEEEcC-CCcEEEEEe--
Q 004924 417 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH--LFSA--------------SGGKISIFSLE-TFQTLATFA-- 475 (723)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~--l~s~--------------sdg~I~vwd~~-~~~~~~~~~-- 475 (723)
+.... .+ +.+.+++|+ |++ ++++ .+|++.+|++. +++....+.
T Consensus 76 ----~~~~~-----------~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~ 139 (365)
T 1jof_A 76 ----EASHP-----------IG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNY 139 (365)
T ss_dssp ----EEEEE-----------CC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEE
T ss_pred ----eeEee-----------cC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeE
Confidence 00000 01 123346667 553 3343 47889999997 466554443
Q ss_pred --CCCCCeEEEEEcCCC-eEEEEEC-CCcEEEEeCC-CCcEE--EEEc--CcCCcEEEEEEcCCCCEEEEEeC-CCcEEE
Q 004924 476 --NPPPIATYFILLPQD-LFAFGFD-DSSILVHCPC-TKKTK--AKLK--GHQNRITCLAYSLSLNVLVSSGA-DAQLCV 545 (723)
Q Consensus 476 --~~~~~v~~l~~~p~~-~l~sgs~-dg~I~iwd~~-~~~~~--~~l~--~~~~~i~~l~~spdg~~l~s~s~-dg~I~v 545 (723)
.+...+.+++|+|+| +++++.. ++.|++||+. +++.. ..+. .|...+..++|+|||+++++++. ++.|.+
T Consensus 140 ~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v 219 (365)
T 1jof_A 140 EYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICE 219 (365)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEE
Confidence 255678999999999 7777664 6799999998 77653 3343 24567899999999999888775 689999
Q ss_pred EeCC--CCceee-ceeeeeeecCCCCCCC------CeEEEE-EccCCCEEEEE--cCC-----cEEEEECC-CCceeEEe
Q 004924 546 WDAV--GWKKLC-SKFLHSFQTGLVPETT------IVNHIQ-FHPDQIHLLSI--HEG-----QIDVYEAP-TLNHTSQL 607 (723)
Q Consensus 546 wd~~--~~~~~~-~~~l~~~~~~~~~~~~------~v~~l~-~spdg~~l~~s--~dg-----~I~vwd~~-~~~~~~~~ 607 (723)
|+++ +++... ...+..++.+...... .+..++ |+|||++|+++ .++ .|.+|++. +++.....
T Consensus 220 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~ 299 (365)
T 1jof_A 220 YVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL 299 (365)
T ss_dssp EEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE
T ss_pred EEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEee
Confidence 9875 443211 1112222221110001 488999 99999998873 233 89999996 56654311
Q ss_pred c-CCCCCCCeEEEEEee---CCcEEEEEeCC-CcEEEEECCCCc
Q 004924 608 V-PDKMDLPITYATYSC---DGKCIYVSCKS-GHVKVFDTSTLE 646 (723)
Q Consensus 608 ~-~~~h~~~v~~l~~sp---dg~~l~sgs~d-g~I~iwd~~~~~ 646 (723)
. ...+...+..++|+| ||++|++++.+ +.|.+|++....
T Consensus 300 ~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 300 FLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred eeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 1 111234456789999 89999998875 899999988763
No 163
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.77 E-value=2.7e-17 Score=176.48 Aligned_cols=272 Identities=13% Similarity=0.062 Sum_probs=175.6
Q ss_pred ccCCCCCEEEEEeC-CCe--EEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcc
Q 004924 332 TSLPDADSAVCAKS-LEK--SVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 408 (723)
Q Consensus 332 ~~spdg~~la~~s~-dg~--v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~ 408 (723)
.+||||++|++++. ++. |.+|++. .+....+ ..+ |...+..++|||||++|+.++.++.+.+||+.++..
T Consensus 42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~----~g~~~~l-t~~--~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~ 114 (388)
T 3pe7_A 42 CFTRDGSKLLFGGAFDGPWNYYLLDLN----TQVATQL-TEG--RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE 114 (388)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETT----TCEEEEC-CCS--SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred cCCCCCCEEEEEEcCCCCceEEEEeCC----CCceEEe-eeC--CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 39999999999998 664 6677776 4555554 232 555566788999999999999999999999875332
Q ss_pred cccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEE--e--CCEEEEE----------------------e-CCcEE
Q 004924 409 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL--R--GSHLFSA----------------------S-GGKIS 461 (723)
Q Consensus 409 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~--s--~~~l~s~----------------------s-dg~I~ 461 (723)
..++. .+...+....| + +..++.. + ++.|.
T Consensus 115 ----------~~~~~-------------~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 171 (388)
T 3pe7_A 115 ----------NVVYQ-------------VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLM 171 (388)
T ss_dssp ----------EEEEE-------------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEE
T ss_pred ----------eeeee-------------chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEE
Confidence 11111 23333333333 4 5555532 2 36799
Q ss_pred EEEcCCCcEEEEEeCCCCCeEEEEEcC-CC-eEEEEECC------CcEEEEeCCCCcEEEEEcCcC--CcEEEEEEcCCC
Q 004924 462 IFSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDD------SSILVHCPCTKKTKAKLKGHQ--NRITCLAYSLSL 531 (723)
Q Consensus 462 vwd~~~~~~~~~~~~~~~~v~~l~~~p-~~-~l~sgs~d------g~I~iwd~~~~~~~~~l~~~~--~~i~~l~~spdg 531 (723)
+||+.+++... +..+...+..++|+| +| .|+.++.+ ..|.++|..+++. ..+..+. ..+..+.|+|||
T Consensus 172 ~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg 249 (388)
T 3pe7_A 172 RVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDG 249 (388)
T ss_dssp EEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTS
T ss_pred EEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCC
Confidence 99999886544 444566788999999 99 77776653 3788888876554 3444343 357888999999
Q ss_pred CEEEEEeC-CC----cEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE----------cCCcEEEE
Q 004924 532 NVLVSSGA-DA----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----------HEGQIDVY 596 (723)
Q Consensus 532 ~~l~s~s~-dg----~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s----------~dg~I~vw 596 (723)
+.|+..+. ++ .|++||+.+++... +.... ++...........|+|||+.|+.. .+..|++|
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~---l~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~ 325 (388)
T 3pe7_A 250 SALVYVSYLKGSPDRFIYSADPETLENRQ---LTSMP-ACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVF 325 (388)
T ss_dssp SCEEEEEEETTCCCEEEEEECTTTCCEEE---EEEEC-CEEEEEECTTSSEEEEEECCC------------CCCCEEEEE
T ss_pred CEEEEEecCCCCCcceEEEEecCCCceEE---EEcCC-CceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEE
Confidence 97765543 22 39999999875322 22111 100000001123799999988852 24589999
Q ss_pred ECCCCceeEEecCCCCCC-----------CeEEEEEeeCCcEEEEEe-CCCcEEEEEC
Q 004924 597 EAPTLNHTSQLVPDKMDL-----------PITYATYSCDGKCIYVSC-KSGHVKVFDT 642 (723)
Q Consensus 597 d~~~~~~~~~~~~~~h~~-----------~v~~l~~spdg~~l~sgs-~dg~I~iwd~ 642 (723)
|+.+++.. .+.. +.. .+.+++|+|||+.|+.++ .+|...+|.+
T Consensus 326 d~~~~~~~-~l~~--~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 326 NMKNGTQH-RVAR--HDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp ETTTTEEE-EEEE--CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eccCCceE-Eecc--ccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 99887753 3332 222 477889999999888665 4666656543
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=2.8e-16 Score=167.54 Aligned_cols=247 Identities=13% Similarity=0.072 Sum_probs=167.8
Q ss_pred CCCeEEEEEe--CCEEEEEeCCcEEEEEcC-CCcEEEEEeC-CCCCeEEEEEcCCC-e-E-EEEE-------------CC
Q 004924 439 KDSISCFALR--GSHLFSASGGKISIFSLE-TFQTLATFAN-PPPIATYFILLPQD-L-F-AFGF-------------DD 498 (723)
Q Consensus 439 ~~~V~~v~~s--~~~l~s~sdg~I~vwd~~-~~~~~~~~~~-~~~~v~~l~~~p~~-~-l-~sgs-------------~d 498 (723)
...+..++|+ |++|++++.+.|.+|++. +++....... ..+.+.+++|+|+| . + ++++ .+
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 3467789999 888888883399999997 7776543321 11235568999999 5 3 3442 68
Q ss_pred CcEEEEeCC-CCcEEEEEc----CcCCcEEEEEEcCCCCEEEEEeC-CCcEEEEeCC-CCceeeceeeeeeec-CCCCCC
Q 004924 499 SSILVHCPC-TKKTKAKLK----GHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAV-GWKKLCSKFLHSFQT-GLVPET 570 (723)
Q Consensus 499 g~I~iwd~~-~~~~~~~l~----~~~~~i~~l~~spdg~~l~s~s~-dg~I~vwd~~-~~~~~~~~~l~~~~~-~~~~~~ 570 (723)
|.+.+|++. +++....+. .+...+.+++|+|||+++++++. ++.|++||+. +++... +..+.. .+.
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~---~~~~~~~~~g--- 192 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL---VGSVDAPDPG--- 192 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE---EEEEECSSTT---
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEE---eeeEecCCCC---
Confidence 999999997 466554443 24567999999999998887764 6799999998 664321 221211 112
Q ss_pred CCeEEEEEccCCCEEEE-E-cCCcEEEEECC--CCcee---EEecC-C----CCCC------CeEEEE-EeeCCcEEEEE
Q 004924 571 TIVNHIQFHPDQIHLLS-I-HEGQIDVYEAP--TLNHT---SQLVP-D----KMDL------PITYAT-YSCDGKCIYVS 631 (723)
Q Consensus 571 ~~v~~l~~spdg~~l~~-s-~dg~I~vwd~~--~~~~~---~~~~~-~----~h~~------~v~~l~-~spdg~~l~sg 631 (723)
..+..++|+|||+++++ + .++.|.+|++. +++.. ..+.. . +|.. .+..++ |+|||++|+++
T Consensus 193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~ 272 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred CCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEE
Confidence 56899999999999887 4 46899999865 56542 12221 1 1121 488999 99999998877
Q ss_pred eCCC------cEEEEECC-CCcEEEEeecccccCCCCccCccceEEEEEecC--CCCEEEEEECC-CcEEEEecCCC
Q 004924 632 CKSG------HVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPL--EPNRIALGLTN-GRVHVIEPLES 698 (723)
Q Consensus 632 s~dg------~I~iwd~~-~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~--d~~~las~s~D-g~v~iWd~~~~ 698 (723)
+.++ .|.+|++. ++++........ . +..... .++|+|. ++++|++++.+ ++|.||++...
T Consensus 273 ~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~----~-~~~~~~--~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSP----T-PTSGGH--SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEESSTTSCCEEEEEEECTTSCEEEEEEEEE----C-SSCCTT--CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCCCeEEEEEECCCCCEEEeeeeee----c-CCCCcc--cceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 6432 89999996 676543211000 0 111233 6889995 58899988764 89999998765
No 165
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.74 E-value=1.9e-17 Score=193.25 Aligned_cols=275 Identities=13% Similarity=0.132 Sum_probs=181.7
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCC---CCeEEEEEe--CCEEE
Q 004924 379 RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK---DSISCFALR--GSHLF 453 (723)
Q Consensus 379 ~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~V~~v~~s--~~~l~ 453 (723)
.++|+|||++++ .+.|++|++||..++.. . .+.+ +|. ..+.+++|| |++|+
T Consensus 20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~-----~-----~~~~-------------~~~~~~~~~~~~~~SpDg~~la 75 (719)
T 1z68_A 20 FPNWISGQEYLH-QSADNNIVLYNIETGQS-----Y-----TILS-------------NRTMKSVNASNYGLSPDRQFVY 75 (719)
T ss_dssp CCEESSSSEEEE-ECTTSCEEEEESSSCCE-----E-----EEEC-------------HHHHHTTTCSEEEECTTSSEEE
T ss_pred ccEECCCCeEEE-EcCCCCEEEEEcCCCcE-----E-----EEEc-------------cccccccceeeEEECCCCCeEE
Confidence 789999996554 55799999999875332 0 0111 121 247899999 88888
Q ss_pred EEeC----------CcEEEEEcCCCcEE--EEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEE-cCcC
Q 004924 454 SASG----------GKISIFSLETFQTL--ATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL-KGHQ 519 (723)
Q Consensus 454 s~sd----------g~I~vwd~~~~~~~--~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l-~~~~ 519 (723)
++++ +.|++||+.+++.+ ..+ ...+.+++|+||| .|+.+. ++.|++||+.+++..... .++.
T Consensus 76 ~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~ 151 (719)
T 1z68_A 76 LESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE 151 (719)
T ss_dssp EEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred EEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence 8763 79999999988762 222 2457889999999 888876 789999999988765432 2333
Q ss_pred CcE-----------------EEEEEcCCCCEEEEEeCCC----------------------------------cEEEEeC
Q 004924 520 NRI-----------------TCLAYSLSLNVLVSSGADA----------------------------------QLCVWDA 548 (723)
Q Consensus 520 ~~i-----------------~~l~~spdg~~l~s~s~dg----------------------------------~I~vwd~ 548 (723)
..| .++.|+|||+.|++++.|. .|++||+
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~ 231 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDT 231 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEES
T ss_pred CCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEEC
Confidence 322 4899999999999988652 7889999
Q ss_pred CCCceeeceeee--eeecCCCCCCCCeEEEEEccCCCEEEEE-cC----CcEEEEE----CCCCceeEEec--CCCCCCC
Q 004924 549 VGWKKLCSKFLH--SFQTGLVPETTIVNHIQFHPDQIHLLSI-HE----GQIDVYE----APTLNHTSQLV--PDKMDLP 615 (723)
Q Consensus 549 ~~~~~~~~~~l~--~~~~~~~~~~~~v~~l~~spdg~~l~~s-~d----g~I~vwd----~~~~~~~~~~~--~~~h~~~ 615 (723)
.+++......+. ....+|. ..+.+++|+||++.+++. .. ..|++|| ..++++...+. ...|...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~ 308 (719)
T 1z68_A 232 TYPAYVGPQEVPVPAMIASSD---YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGW 308 (719)
T ss_dssp SCHHHHCCEECCCCHHHHTSC---EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSC
T ss_pred CCCCccceeEccCCccCCCCc---ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCce
Confidence 886431001111 0012343 578999999998776663 22 2489999 87776544331 0134555
Q ss_pred eE-----EEEEeeCCcEEEE--EeCCC--cEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEEC
Q 004924 616 IT-----YATYSCDGKCIYV--SCKSG--HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 686 (723)
Q Consensus 616 v~-----~l~~spdg~~l~s--gs~dg--~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~ 686 (723)
+. .++|+|||+.++. +..+| .|++|++.+++. ..+.. +...+. .+.++ +++.++..+.
T Consensus 309 ~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~--------~~~~v~--~~~~~--d~~~i~~~~~ 375 (719)
T 1z68_A 309 AGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITS--------GKWEAI--NIFRV--TQDSLFYSSN 375 (719)
T ss_dssp SSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSC--------SSSCEE--EEEEE--CSSEEEEEES
T ss_pred EccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-Eeccc--------CceEEE--EEEEE--eCCEEEEEEe
Confidence 55 7899999996554 44555 577788877763 33321 122233 56666 3555555554
Q ss_pred -----CCcEEEEecCC
Q 004924 687 -----NGRVHVIEPLE 697 (723)
Q Consensus 687 -----Dg~v~iWd~~~ 697 (723)
++.+++|.+..
T Consensus 376 ~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 376 EFEEYPGRRNIYRISI 391 (719)
T ss_dssp CGGGCTTCBEEEEEEC
T ss_pred cCCCCCceEEEEEEeC
Confidence 48899998864
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.73 E-value=3.6e-16 Score=182.93 Aligned_cols=249 Identities=12% Similarity=0.137 Sum_probs=165.8
Q ss_pred CCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCE
Q 004924 374 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 451 (723)
Q Consensus 374 ~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~ 451 (723)
.....+++|+|||++++++ |++|++||+.++.. . .+....+. ..+......++|| |++
T Consensus 16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~-----~-----~~~~~~~~--------~~~~~~~~~~~~Spdg~~ 75 (740)
T 4a5s_A 16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNS-----S-----VFLENSTF--------DEFGHSINDYSISPDGQF 75 (740)
T ss_dssp CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCE-----E-----EEECTTTT--------TTCCSCCCEEEECTTSSE
T ss_pred cccccccEECCCCcEEEEc--CCcEEEEECCCCce-----E-----EEEechhh--------hhhcccccceEECCCCCE
Confidence 3456689999999998886 99999999875432 0 11111000 0112233457889 888
Q ss_pred EEEEe-C---------CcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEE-EcCcC
Q 004924 452 LFSAS-G---------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQ 519 (723)
Q Consensus 452 l~s~s-d---------g~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~-l~~~~ 519 (723)
|+.++ + +.+.+||+.+++.. .+..+...+...+||||| .||.+. ++.|++|++.+++..+. ..++.
T Consensus 76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~ 153 (740)
T 4a5s_A 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKE 153 (740)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBT
T ss_pred EEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCc
Confidence 88887 4 66789999998754 456677789999999999 888875 78999999988875542 22333
Q ss_pred CcE-----------------EEEEEcCCCCEEEEEeCCC------------------------------------cEEEE
Q 004924 520 NRI-----------------TCLAYSLSLNVLVSSGADA------------------------------------QLCVW 546 (723)
Q Consensus 520 ~~i-----------------~~l~~spdg~~l~s~s~dg------------------------------------~I~vw 546 (723)
..+ ..+.|||||+.|+.++.|. +|++|
T Consensus 154 ~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~ 233 (740)
T 4a5s_A 154 DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV 233 (740)
T ss_dssp TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred cceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEE
Confidence 323 3489999999999876432 47778
Q ss_pred eCCC---Cceeeceeeeeee---cCCCCCCCCeEEEEEccCCCEEEE-E-c---CCcEEEEECCCCc----ee--EEecC
Q 004924 547 DAVG---WKKLCSKFLHSFQ---TGLVPETTIVNHIQFHPDQIHLLS-I-H---EGQIDVYEAPTLN----HT--SQLVP 609 (723)
Q Consensus 547 d~~~---~~~~~~~~l~~~~---~~~~~~~~~v~~l~~spdg~~l~~-s-~---dg~I~vwd~~~~~----~~--~~~~~ 609 (723)
|+.+ ++......+. .+ .++. ..+..++|+|||+.++. . . +..|++||+.+++ +. ..+..
T Consensus 234 d~~~~~~~~~~~~~~l~-~~~~~~~~~---~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~ 309 (740)
T 4a5s_A 234 NTDSLSSVTNATSIQIT-APASMLIGD---HYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIE 309 (740)
T ss_dssp ETTSCCSSSCCCEEEEC-CCHHHHTSC---EEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEE
T ss_pred ECCCCCCCCcceEEEec-CCccCCCCC---eEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeee
Confidence 8877 5321111121 11 0233 57899999999997665 3 2 2369999999887 22 11211
Q ss_pred CCCCCCeE-----EEEEeeCCcEEE-EEeC-C--CcEEEEECCCCcEE
Q 004924 610 DKMDLPIT-----YATYSCDGKCIY-VSCK-S--GHVKVFDTSTLELR 648 (723)
Q Consensus 610 ~~h~~~v~-----~l~~spdg~~l~-sgs~-d--g~I~iwd~~~~~~~ 648 (723)
..+...+. .++|+|||+.++ ..+. + ..|++|+..+++..
T Consensus 310 ~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~ 357 (740)
T 4a5s_A 310 MSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT 357 (740)
T ss_dssp ECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred ccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence 12344443 788999999877 6654 3 46888999877654
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.72 E-value=3.1e-15 Score=159.16 Aligned_cols=298 Identities=14% Similarity=0.112 Sum_probs=195.9
Q ss_pred CCCCEEEEEe------CCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEEC----------CCcE
Q 004924 335 PDADSAVCAK------SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----------TATH 398 (723)
Q Consensus 335 pdg~~la~~s------~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~----------dg~i 398 (723)
|+++++.++. .|+.|.+||..+ ++.... ++. +..+ .++|+|||+++++++. +++|
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t----~~~~~~-i~~--g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v 83 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTN----GKFLGM-VPT--AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVV 83 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTT----CCEEEE-EEC--CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCC----CeEEEE-ecC--CCCC--ceEECCCCCEEEEEEecccccccCCCCCEE
Confidence 4566666654 367999999874 333322 333 3333 8999999999998863 5679
Q ss_pred EEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe---CCcEEEEEcCCCcEEEE
Q 004924 399 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLAT 473 (723)
Q Consensus 399 ~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s---dg~I~vwd~~~~~~~~~ 473 (723)
.+||..+.+. ...+ ....+. ..+......++++ |++|++++ +++|.+||+.+++.+..
T Consensus 84 ~v~d~~t~~~-----~~~i-----~~~~~~-------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~ 146 (361)
T 2oiz_A 84 EVWDADKLTF-----EKEI-----SLPPKR-------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED 146 (361)
T ss_dssp EEEETTTCCE-----EEEE-----EECTTB-------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred EEEECcCCcE-----EEEE-----EcCccc-------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence 8988763222 1111 000000 0123445678898 88888876 37899999999988887
Q ss_pred -EeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCC-CcEEEEE------cCcCCcEEEEEEcCCCCEEEEEeCCCcE
Q 004924 474 -FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAKL------KGHQNRITCLAYSLSLNVLVSSGADAQL 543 (723)
Q Consensus 474 -~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~-~~~~~~l------~~~~~~i~~l~~spdg~~l~s~s~dg~I 543 (723)
+... ....+.+.|++ .+++.+.||.+.+|+... ++..... .....++ .+.+++++..++..+.++.+
T Consensus 147 ~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v 223 (361)
T 2oiz_A 147 VTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNV 223 (361)
T ss_dssp EGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEE
T ss_pred EecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeE
Confidence 5432 22335677877 788889999999999865 5554221 1122222 23346777788888889999
Q ss_pred EEEeCCCCceeeceeeeeee-----cCCCCCCCCeEEEEEccCCCEEEEE-c-----------CCcEEEEECCCCceeEE
Q 004924 544 CVWDAVGWKKLCSKFLHSFQ-----TGLVPETTIVNHIQFHPDQIHLLSI-H-----------EGQIDVYEAPTLNHTSQ 606 (723)
Q Consensus 544 ~vwd~~~~~~~~~~~l~~~~-----~~~~~~~~~v~~l~~spdg~~l~~s-~-----------dg~I~vwd~~~~~~~~~ 606 (723)
.++|+..+............ .+..+ .....++|+|+++.++++ . .+.|.+||+.+++.+.+
T Consensus 224 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p--~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~ 301 (361)
T 2oiz_A 224 YSADFSGDEVKVDGPWSLLNDEDKAKNWVP--GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR 301 (361)
T ss_dssp EEEECSSSSCEEEEEEESCCHHHHHTTCEE--CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE
T ss_pred EEEEecCCCceecccccccCcccccccccc--CCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE
Confidence 99999764321111111000 00000 112237899998888873 3 24799999999999998
Q ss_pred ecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCC--cEEEEeecccccCCCCccCccceEEEEEecCCCC
Q 004924 607 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL--ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 679 (723)
Q Consensus 607 ~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~--~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~ 679 (723)
+..+ . +.+++|+|||++|++++. +.|.+||..++ +.+..+... | . .+..++++| +|.
T Consensus 302 i~~~--~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~-----G--~---~P~~~~~~p-~G~ 360 (361)
T 2oiz_A 302 IPGR--D--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGA-----A--E---ASLQVQFHP-VGG 360 (361)
T ss_dssp EECT--T--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTS-----C--S---SEEEEEECC-CSC
T ss_pred EecC--C--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccC-----C--C---CcEEEEecC-CCC
Confidence 8753 3 899999999999999887 99999999999 888776321 1 1 244789999 664
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.71 E-value=2.5e-16 Score=169.19 Aligned_cols=280 Identities=11% Similarity=0.042 Sum_probs=178.3
Q ss_pred ceEEEEEeCCCCEEEEEECC-C--cEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004924 376 RVVRLIYSHSGDFLVALTQT-A--THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 450 (723)
Q Consensus 376 ~V~~l~fspdg~~las~s~d-g--~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 450 (723)
.+.+++|||||++|+.++.. + .|.+|+..+ +....... ++......+.|+ |+
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~---------------------~~~~~l~~--~~~~~~~~~~~spdg~ 93 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLET---------------------QQAVQLTE--GKGDNTFGGFISTDER 93 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTT---------------------TEEEECCC--SSCBCTTTCEECTTSS
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCC---------------------CcEEEeec--CCCCccccceECCCCC
Confidence 36788999999998887653 3 455555442 22222111 122222236788 88
Q ss_pred EEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEE-------------------EEEcCCC-eEEEE-----ECCCcEEEE
Q 004924 451 HLFSAS-GGKISIFSLETFQTLATFANPPPIATY-------------------FILLPQD-LFAFG-----FDDSSILVH 504 (723)
Q Consensus 451 ~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~-------------------l~~~p~~-~l~sg-----s~dg~I~iw 504 (723)
+|+.++ ++.|.+||+.+++.......+...... +.|+|++ .++.+ ..+..|++|
T Consensus 94 ~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 94 AFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEE
T ss_pred EEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEE
Confidence 898888 789999999988876666544443222 3467777 44433 456689999
Q ss_pred eCCCCcEEEEEcCcCCcEEEEEEcC-CCCEEEEEeCC------CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEE
Q 004924 505 CPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 577 (723)
Q Consensus 505 d~~~~~~~~~l~~~~~~i~~l~~sp-dg~~l~s~s~d------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~ 577 (723)
|+.+++..... .+...+..+.|+| ++..++.++.+ ..|.+||+.++.. ..+...... ..+..++
T Consensus 174 d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~------~~l~~~~~~--~~~~~~~ 244 (396)
T 3c5m_A 174 DIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV------RKIKEHAEG--ESCTHEF 244 (396)
T ss_dssp ETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC------EESSCCCTT--EEEEEEE
T ss_pred ECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce------eEeeccCCC--ccccceE
Confidence 99988765544 4667899999999 88877776653 3688889876421 112221100 3578899
Q ss_pred EccCCCEEEE-EcC-----CcEEEEECCCCceeEEecCCCCCCCeEEEEEee-CCcEEEEEe----------------CC
Q 004924 578 FHPDQIHLLS-IHE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC-DGKCIYVSC----------------KS 634 (723)
Q Consensus 578 ~spdg~~l~~-s~d-----g~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~sgs----------------~d 634 (723)
|+|||++|+. +.+ +.|++||+.+++....... . ... +.|+| ||+++++++ .+
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~---~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~ 319 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM---P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEND 319 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC---C-SEE-EEEECSSSSEEEEEECCC----------CCCCC
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC---C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCC
Confidence 9999998776 432 3499999988875443321 1 133 89999 999888755 34
Q ss_pred CcEEEEECCCCcEEEEeecccccC---CCCccCccceEEEEEecCCCCEEEEEEC-CCcEEEEecC
Q 004924 635 GHVKVFDTSTLELRCQINLTAYAQ---PGTISLELYPLVIAAHPLEPNRIALGLT-NGRVHVIEPL 696 (723)
Q Consensus 635 g~I~iwd~~~~~~~~~~~~~~~~~---~g~~~~~v~~~~v~~sp~d~~~las~s~-Dg~v~iWd~~ 696 (723)
+.|++||+.+++.. .+..+.... .+ ........++|+| +++.|+.++. ++...||.+.
T Consensus 320 ~~i~~~d~~~~~~~-~l~~~~~~~~~~~~--~~~~~~~~~~~s~-dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 320 PFLYVLNTKAKSAQ-KLCKHSTSWDVLDG--DRQITHPHPSFTP-NDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp CEEEEEETTTTBCC-EEEECCCCCCCBTT--BSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEEE
T ss_pred CcEEEEecccCceE-EccCCCCccccccc--cccCCCCCceEcc-CCCeEEEEecCCCCceEEEEE
Confidence 78999999988753 332211000 00 0001123678999 8888887764 5665666543
No 169
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.71 E-value=2.5e-14 Score=146.56 Aligned_cols=239 Identities=10% Similarity=0.068 Sum_probs=175.1
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeC------CCCCeEEEEE-cCCC-eEEEEEC-CCcEEEE
Q 004924 437 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN------PPPIATYFIL-LPQD-LFAFGFD-DSSILVH 504 (723)
Q Consensus 437 ~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~------~~~~v~~l~~-~p~~-~l~sgs~-dg~I~iw 504 (723)
++-..+.+++++ +.++++.. ++.|.+||.. ++....+.. +...+..+++ .+++ .+++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 456678899998 66666666 8999999987 666666642 3356889999 4677 5544433 8899999
Q ss_pred eCCCCcEEEEEcC-cCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeec-CCCCCCCCeEEEEEccCC
Q 004924 505 CPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT-GLVPETTIVNHIQFHPDQ 582 (723)
Q Consensus 505 d~~~~~~~~~l~~-~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~-~~~~~~~~v~~l~~spdg 582 (723)
| .+++.+..+.. +...+.+++++|+|+.+++...++.|.+||... . .+..+.. .+. ..+..++++|+|
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~-----~~~~~~~~~~~---~~p~~i~~~~~g 175 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-N-----VLHKFGCSKHL---EFPNGVVVNDKQ 175 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-C-----EEEEEECTTTC---SSEEEEEECSSS
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-C-----EEEEeCCCCcc---CCcEEEEECCCC
Confidence 9 56777777743 446789999999999888877889999999754 2 1221221 222 468999999999
Q ss_pred CEEEEE-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCC-cEEEEECCCCcEEEEeecccccCCC
Q 004924 583 IHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-HVKVFDTSTLELRCQINLTAYAQPG 660 (723)
Q Consensus 583 ~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg-~I~iwd~~~~~~~~~~~~~~~~~~g 660 (723)
+.+++. .++.|++||. +++.+..+...++...+..++++++|+++++...++ .|.+|+. +++.+..+..+
T Consensus 176 ~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~------ 247 (286)
T 1q7f_A 176 EIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK------ 247 (286)
T ss_dssp EEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES------
T ss_pred CEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc------
Confidence 877774 6889999998 566666665433346789999999999888888776 9999995 56666666432
Q ss_pred CccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCC
Q 004924 661 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 661 ~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
.....+.+++++| +++++++ +.|++|++|++...
T Consensus 248 --~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 248 --VKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp --SCCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred --CCCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence 1112345899999 8877776 67999999998653
No 170
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.70 E-value=1.3e-13 Score=154.33 Aligned_cols=327 Identities=11% Similarity=0.053 Sum_probs=218.0
Q ss_pred CCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccc
Q 004924 335 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN 414 (723)
Q Consensus 335 pdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~ 414 (723)
|++..+++...++.|.++|..+ ++.... ++ ....+.++.|||||+++++++.|+.|.+||+... ++.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t----~~v~~~-i~---~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~---t~~-- 231 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGST----YEIKTV-LD---TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK---EPT-- 231 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTT----CCEEEE-EE---CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSS---SCC--
T ss_pred CCceEEEEeCCCCeEEEEECCC----CeEEEE-Ee---CCCCccceEECCCCCEEEEEcCCCeEEEEECCCC---CCc--
Confidence 4456677888899999999884 333322 22 2346779999999999999999999999997410 011
Q ss_pred eeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe------CCEEEEEe--CCcEEEEEcCCCcEEEEEeCC---------
Q 004924 415 VNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSAS--GGKISIFSLETFQTLATFANP--------- 477 (723)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s------~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~--------- 477 (723)
.+.... .......++|+ |+++++++ +++|.++|..+.+.++.+...
T Consensus 232 --------------~v~~i~---~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~ 294 (567)
T 1qks_A 232 --------------TVAEIK---IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY 294 (567)
T ss_dssp --------------EEEEEE---CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE
T ss_pred --------------EeEEEe---cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccc
Confidence 111111 12234567776 67888777 799999999999998877522
Q ss_pred --CCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEEE--EEcCcCCcEEEEEEcCCCCEEEEEe-CCCcEEEEeCCC
Q 004924 478 --PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA--KLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVG 550 (723)
Q Consensus 478 --~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~--~l~~~~~~i~~l~~spdg~~l~s~s-~dg~I~vwd~~~ 550 (723)
...+..+..++++ .++....+|.|.++|..+.+... .+. ......++.|+|+|+++++++ .++.|.++|+.+
T Consensus 295 ~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t 373 (567)
T 1qks_A 295 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 373 (567)
T ss_dssp ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCC
Confidence 2267888889987 56666677999999987754332 222 334577889999999987766 578999999999
Q ss_pred Cceeeceee-eeeecCCCCCCCCeEEEEEccCCCEE-EEE--cCCcEEEEECCC-------CceeEEecCCCCCCCeEEE
Q 004924 551 WKKLCSKFL-HSFQTGLVPETTIVNHIQFHPDQIHL-LSI--HEGQIDVYEAPT-------LNHTSQLVPDKMDLPITYA 619 (723)
Q Consensus 551 ~~~~~~~~l-~~~~~~~~~~~~~v~~l~~spdg~~l-~~s--~dg~I~vwd~~~-------~~~~~~~~~~~h~~~v~~l 619 (723)
++......+ . ...|. +....+ ++|++..+ +++ .++.|.++|..+ .+.++++... ...-..+
T Consensus 374 ~kl~~~i~vgg--~~Php---g~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~--g~g~~~i 445 (567)
T 1qks_A 374 GKLVAIEDTGG--QTPHP---GRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL--GGGSLFI 445 (567)
T ss_dssp TEEEEEEECSS--SSBCC---TTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS--CSCCCCE
T ss_pred CcEEEEEeccC--cCCCC---ccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC--CCCCEEE
Confidence 754333222 1 11121 222222 68875444 455 568999999987 5677777643 2233446
Q ss_pred EEeeCCcEEEEEeC-------CCcEEEEECCCC-----cEE-EEeeccc--ccCCCCccCccceEEEEEecCCCCEEEEE
Q 004924 620 TYSCDGKCIYVSCK-------SGHVKVFDTSTL-----ELR-CQINLTA--YAQPGTISLELYPLVIAAHPLEPNRIALG 684 (723)
Q Consensus 620 ~~spdg~~l~sgs~-------dg~I~iwd~~~~-----~~~-~~~~~~~--~~~~g~~~~~v~~~~v~~sp~d~~~las~ 684 (723)
..+|+++++++... .+.|.++|+.+. ... ..+.... .++.+ .-.+..+.|+| +|+.+..+
T Consensus 446 ~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~G~~~~~s 520 (567)
T 1qks_A 446 KTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEG----QPRVVQGEFNK-DGTEVWFS 520 (567)
T ss_dssp ECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSS----CCEEEEEEECT-TSSEEEEE
T ss_pred EeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCC----CcceEeeeECC-CCCEEEEE
Confidence 78999999998763 369999999876 211 2222100 01111 22355899999 78766554
Q ss_pred E-----CCCcEEEEecCCCceeeecC
Q 004924 685 L-----TNGRVHVIEPLESEVEWGKL 705 (723)
Q Consensus 685 s-----~Dg~v~iWd~~~~~~~w~~~ 705 (723)
. .++.|.|+|..+++.+-..+
T Consensus 521 ~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 521 VWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp EECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred eecCCCCCCcEEEEECCCceEEEEeC
Confidence 3 37999999999998765544
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.69 E-value=7.6e-15 Score=154.05 Aligned_cols=247 Identities=14% Similarity=0.091 Sum_probs=180.2
Q ss_pred CCCCeEEEEEe--CCEEEEEe-C------------------------CcEEEEEcCCCcEEEEEe-CCCCCeEEEEEcCC
Q 004924 438 PKDSISCFALR--GSHLFSAS-G------------------------GKISIFSLETFQTLATFA-NPPPIATYFILLPQ 489 (723)
Q Consensus 438 h~~~V~~v~~s--~~~l~s~s-d------------------------g~I~vwd~~~~~~~~~~~-~~~~~v~~l~~~p~ 489 (723)
.-..+.+++++ |+++++.. + ++|.+||..+++....+. ++......++++|+
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 34678999999 77777776 5 379999999998877665 44457889999999
Q ss_pred C-eEEEEECCCcEEEEeCCCCc-EEEEE---------cCcCCcEEEEEEcC-CCCEEEEEe-CCCcEEEEeCCCCceeec
Q 004924 490 D-LFAFGFDDSSILVHCPCTKK-TKAKL---------KGHQNRITCLAYSL-SLNVLVSSG-ADAQLCVWDAVGWKKLCS 556 (723)
Q Consensus 490 ~-~l~sgs~dg~I~iwd~~~~~-~~~~l---------~~~~~~i~~l~~sp-dg~~l~s~s-~dg~I~vwd~~~~~~~~~ 556 (723)
| .+++...++.|++||..... .+..+ .++-.....++++| +|..+++.+ .++.|++||... .....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEEE
Confidence 9 88888889999999976442 45555 23445789999999 788888876 699999999543 32211
Q ss_pred eeeeeee----cCCCCCCCCeEEEEEccC-CCEEEEE-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEE
Q 004924 557 KFLHSFQ----TGLVPETTIVNHIQFHPD-QIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV 630 (723)
Q Consensus 557 ~~l~~~~----~~~~~~~~~v~~l~~spd-g~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s 630 (723)
....... .++. .....++++|+ +..+++. .++.|++||..+++.+..+....+...+..++|+| +..+++
T Consensus 181 ~~~~g~~~~~~~~~~---~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~ 256 (329)
T 3fvz_A 181 WGEESSGSSPRPGQF---SVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAV 256 (329)
T ss_dssp ECEECCSSSCCTTEE---SCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEE
T ss_pred eccCCCCCCCCCccc---CCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEe
Confidence 1000000 0111 34789999999 5555554 77899999998899988886555677889999999 433333
Q ss_pred E-------eCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCC
Q 004924 631 S-------CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 631 g-------s~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~ 697 (723)
. ..+..|++|+..+++.+..+.... ...-.+.+++++| +|.++++.+.+++|++|++..
T Consensus 257 ~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~-------~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 257 NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR-------KHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp ECCCCTTCSCCCCEEEEETTTCCEEEEECCSS-------SCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred CCCEEeccCCCcEEEEEEcCCCeEEEEEcCCC-------CccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence 3 345689999999999888774210 1112355999999 888888888999999999864
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.68 E-value=4.5e-14 Score=144.63 Aligned_cols=242 Identities=10% Similarity=0.085 Sum_probs=175.3
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe---C
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---G 449 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~ 449 (723)
+-..+.+++++|+|+.+++.+.++.|.+|+.... .. ..+... + ...++...+.++++. +
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~------~~-----~~~~~~-~------~~~~~~~~p~~i~~~~~~g 89 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR------FK-----FQFGEC-G------KRDSQLLYPNRVAVVRNSG 89 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC------EE-----EEECCB-S------SSTTCBSSEEEEEEETTTT
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCCCc------EE-----EEeccc-C------CCcccccCceEEEEEcCCC
Confidence 6678999999999998888888999999986521 11 111100 0 001345678899994 4
Q ss_pred CEEEEEe--CCcEEEEEcCCCcEEEEEe-CCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEc--CcCCcEE
Q 004924 450 SHLFSAS--GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRIT 523 (723)
Q Consensus 450 ~~l~s~s--dg~I~vwd~~~~~~~~~~~-~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~--~~~~~i~ 523 (723)
.++++.. ++.|.+|| .+++.+..+. .+...+.+++++|+| .+++...++.|.+||.. ++.+..+. ++...+.
T Consensus 90 ~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~ 167 (286)
T 1q7f_A 90 DIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPN 167 (286)
T ss_dssp EEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEE
T ss_pred eEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcE
Confidence 4555543 68999999 5677777775 344578899999999 77777778999999964 66666664 3456789
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeee-cCCCCCCCCeEEEEEccCCCEEEEE-cCC-cEEEEECCC
Q 004924 524 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-TGLVPETTIVNHIQFHPDQIHLLSI-HEG-QIDVYEAPT 600 (723)
Q Consensus 524 ~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~-~~~~~~~~~v~~l~~spdg~~l~~s-~dg-~I~vwd~~~ 600 (723)
.++++|+|+.+++.+.++.|++||.... .+..+. .++. ..+..++++|+|.++++. .++ .|.+||. +
T Consensus 168 ~i~~~~~g~l~v~~~~~~~i~~~~~~g~------~~~~~~~~g~~---~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~ 237 (286)
T 1q7f_A 168 GVVVNDKQEIFISDNRAHCVKVFNYEGQ------YLRQIGGEGIT---NYPIGVGINSNGEILIADNHNNFNLTIFTQ-D 237 (286)
T ss_dssp EEEECSSSEEEEEEGGGTEEEEEETTCC------EEEEESCTTTS---CSEEEEEECTTCCEEEEECSSSCEEEEECT-T
T ss_pred EEEECCCCCEEEEECCCCEEEEEcCCCC------EEEEEccCCcc---CCCcEEEECCCCCEEEEeCCCCEEEEEECC-C
Confidence 9999999998887778999999998652 222221 1222 468899999999888875 554 9999996 5
Q ss_pred CceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCC
Q 004924 601 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 645 (723)
Q Consensus 601 ~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~ 645 (723)
++.+..+........+.+++++|+|+++++ +.|+.|++|++...
T Consensus 238 g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 238 GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 676767654333445889999999987766 67999999998654
No 173
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.67 E-value=2.8e-15 Score=160.89 Aligned_cols=281 Identities=8% Similarity=-0.018 Sum_probs=171.7
Q ss_pred ccCCCCCEEEEEeCC---CeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcc
Q 004924 332 TSLPDADSAVCAKSL---EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 408 (723)
Q Consensus 332 ~~spdg~~la~~s~d---g~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~ 408 (723)
.+||||++++.+... ..+.+|++.+ +....+. .+ +......+.|||||++|+.++.++.|.+|++.++..
T Consensus 42 ~~SpdG~~l~~~~~~~g~~~l~~~d~~~----~~~~~l~-~~--~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~ 114 (396)
T 3c5m_A 42 CFTQDGKKLLFAGDFDGNRNYYLLNLET----QQAVQLT-EG--KGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE 114 (396)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETTT----TEEEECC-CS--SCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred cCCCCCCEEEEEEecCCCceEEEEECCC----CcEEEee-cC--CCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc
Confidence 489999999888654 3577778763 4444432 11 222233478999999999999999999999875432
Q ss_pred cccccceeeeeEEEecCCCeeee--eccCCCCCCCeEE-----EEEe--CCEEEEE-----e-CCcEEEEEcCCCcEEEE
Q 004924 409 SLEEENVNMESQLYQPSSKLVMT--NDIAADPKDSISC-----FALR--GSHLFSA-----S-GGKISIFSLETFQTLAT 473 (723)
Q Consensus 409 ~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~h~~~V~~-----v~~s--~~~l~s~-----s-dg~I~vwd~~~~~~~~~ 473 (723)
. .+.....+.... .+.. ........ +.|+ ++.++.+ . +..|.+||+.+++....
T Consensus 115 -----~-----~~~~~~~~~~~~g~~l~~-~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~ 183 (396)
T 3c5m_A 115 -----Q-----VIYTVDEEWKGYGTWVAN-SDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI 183 (396)
T ss_dssp -----E-----EEEECCTTEEEEEEEEEC-TTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE
T ss_pred -----E-----EEEecccccCCCCCEEEe-ccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee
Confidence 0 111110000000 0000 00000000 1233 3333322 2 56899999998876554
Q ss_pred EeCCCCCeEEEEEcC-CC-eEEEEECC------CcEEEEeCCCCcEEEEEcCc-CCcEEEEEEcCCCCEEEEEeCC----
Q 004924 474 FANPPPIATYFILLP-QD-LFAFGFDD------SSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSGAD---- 540 (723)
Q Consensus 474 ~~~~~~~v~~l~~~p-~~-~l~sgs~d------g~I~iwd~~~~~~~~~l~~~-~~~i~~l~~spdg~~l~s~s~d---- 540 (723)
. .+...+..+.|+| ++ .++..+.+ ..|.+||+.+++........ ...+..+.|+|||+.|+.++.+
T Consensus 184 ~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 262 (396)
T 3c5m_A 184 H-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQT 262 (396)
T ss_dssp E-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTC
T ss_pred c-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCc
Confidence 4 4566788999999 77 67766543 36889998766543332311 2357889999999988777554
Q ss_pred -CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEcc-CCCEEEEE-----------------cCCcEEEEECCCC
Q 004924 541 -AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLSI-----------------HEGQIDVYEAPTL 601 (723)
Q Consensus 541 -g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~sp-dg~~l~~s-----------------~dg~I~vwd~~~~ 601 (723)
+.|++||+.+++.. .+. .. .... +.|+| +|++++++ .+..|++||+.++
T Consensus 263 ~~~l~~~d~~~g~~~---~l~---~~-----~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 263 DRVIYKANPETLENE---EVM---VM-----PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp CEEEEEECTTTCCEE---EEE---EC-----CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred cceEEEEECCCCCeE---Eee---eC-----CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence 44999999886431 111 11 1233 89999 99988863 2368999999887
Q ss_pred ceeEEecCCCCCC-----------CeEEEEEeeCCcEEEEEeC-CCc--EEEEECCCCc
Q 004924 602 NHTSQLVPDKMDL-----------PITYATYSCDGKCIYVSCK-SGH--VKVFDTSTLE 646 (723)
Q Consensus 602 ~~~~~~~~~~h~~-----------~v~~l~~spdg~~l~sgs~-dg~--I~iwd~~~~~ 646 (723)
+.. .+.. +.. .+..++|+|||+.|+.++. ++. |+.+++.++.
T Consensus 331 ~~~-~l~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 331 SAQ-KLCK--HSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp BCC-EEEE--CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred ceE-EccC--CCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence 653 3322 122 2566899999998887665 444 5555555554
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.65 E-value=8.6e-15 Score=168.97 Aligned_cols=283 Identities=11% Similarity=-0.002 Sum_probs=182.4
Q ss_pred CCCceEEEEEeCCCCEEEEE--ECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeE-------
Q 004924 373 FGGRVVRLIYSHSGDFLVAL--TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS------- 443 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~--s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~------- 443 (723)
|...+..++|++++-++++. +.++...||....+ + ....+ . .|...+.
T Consensus 22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~----~-~~~~l----------------~--~~~~~~~~~~~~~~ 78 (662)
T 3azo_A 22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD----G-AEESA----------------L--PAPWNVRNRVFEYS 78 (662)
T ss_dssp TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT----S-CEEES----------------S--CTTCCBCCCGGGTC
T ss_pred cCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC----C-Cccee----------------C--CCCccccccccccC
Confidence 88899999999987777777 55788999986321 1 11000 0 1222222
Q ss_pred --EEEEe----CCE-EEEEeC--CcEEEEEcC--CCcEEEEEeC-----CCCCeEEEEEcCCC-eEEEEECC--------
Q 004924 444 --CFALR----GSH-LFSASG--GKISIFSLE--TFQTLATFAN-----PPPIATYFILLPQD-LFAFGFDD-------- 498 (723)
Q Consensus 444 --~v~~s----~~~-l~s~sd--g~I~vwd~~--~~~~~~~~~~-----~~~~v~~l~~~p~~-~l~sgs~d-------- 498 (723)
...|+ |+. |+.+++ ..|.+|++. .......+.. +...+.+++|+||| .|++++.+
T Consensus 79 ~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~ 158 (662)
T 3azo_A 79 GFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSD 158 (662)
T ss_dssp CCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTC
T ss_pred CccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCC
Confidence 33343 777 776663 556666665 2034455554 56678899999999 88888776
Q ss_pred --CcEEEEeCCC------CcEEEEEc-CcCCcEEEEEEcCCCCEEEEEeCCC--------cEEEEeCC-CCceeeceeee
Q 004924 499 --SSILVHCPCT------KKTKAKLK-GHQNRITCLAYSLSLNVLVSSGADA--------QLCVWDAV-GWKKLCSKFLH 560 (723)
Q Consensus 499 --g~I~iwd~~~------~~~~~~l~-~~~~~i~~l~~spdg~~l~s~s~dg--------~I~vwd~~-~~~~~~~~~l~ 560 (723)
..|++||+.+ ++. ..+. .+...+..++|+|||++|+.++.++ .|++||+. ++... ...
T Consensus 159 ~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~---~~~ 234 (662)
T 3azo_A 159 VRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA---DTR 234 (662)
T ss_dssp EEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE---EEE
T ss_pred ceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc---ccE
Confidence 5899999987 554 4455 5667788899999999999887553 79999998 45211 122
Q ss_pred eeecCCCCCCCCeEEEEEccCCCEEEEE-cCC--cEEEEECCCCceeEEecCCCCCCC--------eEEEEEeeCCcEEE
Q 004924 561 SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--QIDVYEAPTLNHTSQLVPDKMDLP--------ITYATYSCDGKCIY 629 (723)
Q Consensus 561 ~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg--~I~vwd~~~~~~~~~~~~~~h~~~--------v~~l~~spdg~~l~ 629 (723)
.+..++. ..+..++|+|||++++++ .++ .|++||+.+++....... +... +..++|+|++++++
T Consensus 235 ~l~~~~~---~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~--~~~~~~p~w~~~~~~~~~~~~~~~~~ 309 (662)
T 3azo_A 235 TLLGGPE---EAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRR--EEEFAGPLWTPGMRWFAPLANGLIAV 309 (662)
T ss_dssp EEEEETT---BCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCC--SSBSSCCCCSTTCCSEEECTTSCEEE
T ss_pred EeCCCCC---ceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccc--cccccCccccccCceEeEeCCCEEEE
Confidence 2333333 578999999999966665 556 677788767765433221 1111 56789999999999
Q ss_pred EEeCCCcEEEE--ECCCCcEEEEeecccccCCCCccCccceEEE-EEecCCCCEEEEEECCC--cEEEEecCCCce
Q 004924 630 VSCKSGHVKVF--DTSTLELRCQINLTAYAQPGTISLELYPLVI-AAHPLEPNRIALGLTNG--RVHVIEPLESEV 700 (723)
Q Consensus 630 sgs~dg~I~iw--d~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v-~~sp~d~~~las~s~Dg--~v~iWd~~~~~~ 700 (723)
+++. +.+++| |..+++ ...+..+ ...+. .+ ++++ +.-++++++.+. .|.+||+.+++.
T Consensus 310 ~~~~-~~~~l~~~d~~~~~-~~~l~~~--------~~~~~--~~~s~~~-~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 310 VHGK-GAAVLGILDPESGE-LVDAAGP--------WTEWA--ATLTVSG-TRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp EEBS-SSCEEEEEETTTTE-EEECCSS--------CCEEE--EEEEEET-TEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEc-CccEEEEEECCCCc-EEEecCC--------CCeEE--EEEecCC-CEEEEEEcCCCCCCEEEEEECCCCce
Confidence 9998 999999 666665 4444321 22233 44 4433 222344555554 455556666653
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.64 E-value=6.4e-14 Score=146.94 Aligned_cols=260 Identities=11% Similarity=0.002 Sum_probs=180.2
Q ss_pred CCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccc---cceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--
Q 004924 374 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE---ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 448 (723)
Q Consensus 374 ~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-- 448 (723)
-+.+.+++++|+|+.+++.+.++.+.+++.......... ....-.+.+||..++.+..... .++-.....++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG-KNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC-TTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC-CCccCCceEEEECCC
Confidence 467999999999999888887765444333221110000 0011134567777777654332 1345678899999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCc-EEEEEe---------CCCCCeEEEEEcC-CC-eEEEEE-CCCcEEEEeCCCCcEEEE
Q 004924 449 GSHLFSAS-GGKISIFSLETFQ-TLATFA---------NPPPIATYFILLP-QD-LFAFGF-DDSSILVHCPCTKKTKAK 514 (723)
Q Consensus 449 ~~~l~s~s-dg~I~vwd~~~~~-~~~~~~---------~~~~~v~~l~~~p-~~-~l~sgs-~dg~I~iwd~~~~~~~~~ 514 (723)
|+++++.. ++.|++|+..... .+..+. .+......++++| ++ .+++.+ .++.|++|| .+|+.+..
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence 77666666 7999999986442 455552 3344688999999 67 666665 689999999 56777777
Q ss_pred EcCc----------CCcEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceeeceeeeeee-cCCCCCCCCeEEEEEccCC
Q 004924 515 LKGH----------QNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-TGLVPETTIVNHIQFHPDQ 582 (723)
Q Consensus 515 l~~~----------~~~i~~l~~spd-g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~-~~~~~~~~~v~~l~~spdg 582 (723)
+... -.....++++|+ +..+++...++.|++||..+|+... ++. ..+. ..+..++++| +
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~-----~~~~~~~~---~~~~~~~~~p-g 251 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVR-----EIKHASFG---RNVFAISYIP-G 251 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-----EECCTTTT---TCEEEEEEET-T
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEE-----EEeccccC---CCcceeeecC-C
Confidence 7432 234889999998 7777777788999999998664332 221 1222 5788999999 4
Q ss_pred CEEEE-E-------cCCcEEEEECCCCceeEEecC-CCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCC
Q 004924 583 IHLLS-I-------HEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 644 (723)
Q Consensus 583 ~~l~~-s-------~dg~I~vwd~~~~~~~~~~~~-~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~ 644 (723)
..+.+ + .+..|++||..+++.+..+.. ..+...+..++++|+|..+++...++.|++|++..
T Consensus 252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 33333 2 234899999999998888742 23467789999999998888888899999999753
No 176
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.64 E-value=8.6e-14 Score=141.89 Aligned_cols=251 Identities=9% Similarity=0.001 Sum_probs=188.2
Q ss_pred CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCC-CCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCc-CCcEEE
Q 004924 449 GSHLFSAS-GGKISIFSLETFQTLATFANPP-PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITC 524 (723)
Q Consensus 449 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~-~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~-~~~i~~ 524 (723)
++.|++++ ++.|.+||.++|+.+.++..+. ..+.++.+.|+| .++ +.++.|..||. +|+.+..+..+ ...+.+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence 56788888 9999999999999999998765 468899999999 666 45788999998 89999988865 357889
Q ss_pred EEEcCCCCEEEEEeC-CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCc
Q 004924 525 LAYSLSLNVLVSSGA-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN 602 (723)
Q Consensus 525 l~~spdg~~l~s~s~-dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~ 602 (723)
+.+.++|+.+++.+. ++.+..+|. +|+.+....+..-...+. .....+++.++|.++++. .++.|..||.. |+
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~---~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPH---AQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGG---GSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCccc---ccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence 999999999999887 778888886 444433333221101111 245566789999999985 78999999997 99
Q ss_pred eeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEE
Q 004924 603 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 682 (723)
Q Consensus 603 ~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la 682 (723)
.+.++.. ...+.++.+.++|+.+++++.++.|..+|..+|+.+..+..... .+ ..-.++..++..+ ++++++
T Consensus 157 ~~w~~~~---~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~--~~--~~l~~~~~~~~~~-~G~i~v 228 (276)
T 3no2_A 157 LLNSVKL---SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI--EG--VQLFFVAQLFPLQ-NGGLYI 228 (276)
T ss_dssp EEEEEEC---SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS--BS--CCCSEEEEEEECT-TSCEEE
T ss_pred EEEEEEC---CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC--CC--ccccccccceEcC-CCCEEE
Confidence 9888864 23456778889999999999889999999999999998863211 01 1112355888888 888888
Q ss_pred EEECC--------CcEEEEec-CCCceeeecCCCCccccccc
Q 004924 683 LGLTN--------GRVHVIEP-LESEVEWGKLPFTDSREFST 715 (723)
Q Consensus 683 s~s~D--------g~v~iWd~-~~~~~~w~~~~~~~~g~~~~ 715 (723)
+.+.. +..+++++ .+++-.|.......-|..|+
T Consensus 229 ~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~ 270 (276)
T 3no2_A 229 CNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMIST 270 (276)
T ss_dssp EEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCE
T ss_pred EeccCccccccccCCceEEEECCCCCEEEEecCcccccceee
Confidence 77421 24467777 57888899887666665554
No 177
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.63 E-value=1e-13 Score=145.32 Aligned_cols=241 Identities=10% Similarity=0.037 Sum_probs=173.5
Q ss_pred CCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEc
Q 004924 440 DSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK 516 (723)
Q Consensus 440 ~~V~~v~~s-~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~ 516 (723)
.....+.+. +...++.. ++.|.+||..+++.+.++.. ......+++++++ .+++...++.|.+||..+++....+.
T Consensus 44 ~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 44 DVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp SCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred ccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 446778888 44445555 79999999999999888853 4567899999989 55554478999999999998887775
Q ss_pred CcC-----CcEEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-
Q 004924 517 GHQ-----NRITCLAYSLSLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI- 588 (723)
Q Consensus 517 ~~~-----~~i~~l~~spdg~~l~s~s--~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s- 588 (723)
... .....+++ ++..++++. .++.|.+||..+++... ++..+ .....++++|+|++++++
T Consensus 123 ~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~-----~i~~g-----~~p~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVD-----ELTIG-----IQPTSLVMDKYNKMWTITD 190 (328)
T ss_dssp CTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEE-----EEECS-----SCBCCCEECTTSEEEEEBC
T ss_pred cCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEE-----EEEcC-----CCccceEEcCCCCEEEEEC
Confidence 432 14456667 344555554 48899999999864432 23333 345688999999877774
Q ss_pred cC----------CcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccC
Q 004924 589 HE----------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ 658 (723)
Q Consensus 589 ~d----------g~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 658 (723)
.+ +.|.++|..+++....+... .......++|+|++++|+++.. .|++||..+++..... +..
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~-~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~----~~~ 263 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK-LGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRP----FLE 263 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECC-TTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSC----SBC
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecC-CCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeee----eec
Confidence 33 68999999999887776532 1346889999999999988765 8999999988753211 111
Q ss_pred CCCccCccceEEEEEecCCCCEEEEE----ECCCcEEEEecCCCceeeecC
Q 004924 659 PGTISLELYPLVIAAHPLEPNRIALG----LTNGRVHVIEPLESEVEWGKL 705 (723)
Q Consensus 659 ~g~~~~~v~~~~v~~sp~d~~~las~----s~Dg~v~iWd~~~~~~~w~~~ 705 (723)
.+ . -.+..++++|.++.++++. ..++.|.+||+. ++..+...
T Consensus 264 ~~--~--~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 264 FR--D--TKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp CC--S--SCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred CC--C--CceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 00 1 2245899999666777776 678999999998 87776653
No 178
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.63 E-value=1.5e-13 Score=144.15 Aligned_cols=272 Identities=11% Similarity=0.040 Sum_probs=183.4
Q ss_pred CCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCE
Q 004924 374 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 451 (723)
Q Consensus 374 ~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~ 451 (723)
...|.+++|++++..++..+.++.++.|.-. .|. .+. .+...+.+++|+ |++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~--------~~~--~~~~~~~~~~~~~~g~l 58 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTITAE----------------PWL--------EIS--KKGLQLEGLNFDRQGQL 58 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEEECE----------------EEE--------EEE--SSCCCEEEEEECTTSCE
T ss_pred ccccceeeecCCccceeEEeecccCcccccc----------------eeE--------EEe--ccCccccCcEECCCCCE
Confidence 3457788899988877777778888888311 011 000 355667899998 666
Q ss_pred EEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECC----CcEEEEeCCCCcEEEEEc--CcCCcEE
Q 004924 452 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAKLK--GHQNRIT 523 (723)
Q Consensus 452 l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~d----g~I~iwd~~~~~~~~~l~--~~~~~i~ 523 (723)
++++. ++.|.+||..+++.......+...+.+++++|+| .++++..+ +.|.+||..++.....+. .+...+.
T Consensus 59 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 138 (333)
T 2dg1_A 59 FLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCID 138 (333)
T ss_dssp EEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEE
T ss_pred EEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCccc
Confidence 66776 8899999998887765554566789999999999 66666655 689999998877654443 2446789
Q ss_pred EEEEcCCCCEEEEEeC------CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E-cCCcEEE
Q 004924 524 CLAYSLSLNVLVSSGA------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDV 595 (723)
Q Consensus 524 ~l~~spdg~~l~s~s~------dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~dg~I~v 595 (723)
+++++|+|+.+++... .+.|..||..+++.. . +.... ..+..++|+|+|+.+++ . .++.|++
T Consensus 139 ~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~---~---~~~~~----~~~~~i~~~~dg~~l~v~~~~~~~i~~ 208 (333)
T 2dg1_A 139 DMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT---P---IIQNI----SVANGIALSTDEKVLWVTETTANRLHR 208 (333)
T ss_dssp EEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE---E---EEEEE----SSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred ceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE---E---eecCC----CcccceEECCCCCEEEEEeCCCCeEEE
Confidence 9999999987776653 355666666553221 1 11111 45789999999987765 3 5789999
Q ss_pred EECCC-CceeEEe------cCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccce
Q 004924 596 YEAPT-LNHTSQL------VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYP 668 (723)
Q Consensus 596 wd~~~-~~~~~~~------~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~ 668 (723)
||+.+ +.....+ .... ...+..++++++|+++++...++.|.+||. .++.+..+..... ..|+ ...+
T Consensus 209 ~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~-~~g~---~~~~ 282 (333)
T 2dg1_A 209 IALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR-DEGH---MLRS 282 (333)
T ss_dssp EEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG-GGTC---SCBC
T ss_pred EEecCCCcCcccccceEEEecCC-CCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCC-cccc---ccCc
Confidence 99964 3322211 1111 246788999999998888878899999998 4666666542210 0010 0124
Q ss_pred EEEEEecCCCCEEEEEECCC
Q 004924 669 LVIAAHPLEPNRIALGLTNG 688 (723)
Q Consensus 669 ~~v~~sp~d~~~las~s~Dg 688 (723)
.+++|+| ++..|+.++.++
T Consensus 283 ~~~~~~~-dg~~L~v~~~~g 301 (333)
T 2dg1_A 283 THPQFIP-GTNQLIICSNDI 301 (333)
T ss_dssp CEEEECT-TSCEEEEEEECG
T ss_pred ceEEECC-CCCEEEEEeCcc
Confidence 4899999 776666555553
No 179
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.63 E-value=3.9e-14 Score=163.49 Aligned_cols=282 Identities=10% Similarity=-0.044 Sum_probs=175.2
Q ss_pred cCCCCCEEEEE--eCCCeEEEEeecccCCCCceeEEecCCCCCCCceE---------EEEEe--CCCCE-EEEEEC-CCc
Q 004924 333 SLPDADSAVCA--KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVV---------RLIYS--HSGDF-LVALTQ-TAT 397 (723)
Q Consensus 333 ~spdg~~la~~--s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~---------~l~fs--pdg~~-las~s~-dg~ 397 (723)
+++++.+++.. +.++...||.... .+..+.+ .. |...+. ...|+ |||++ |+.++. +..
T Consensus 31 ~s~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~l--~~--~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~ 103 (662)
T 3azo_A 31 AVGDEVWWVAPRPAEAGRATLVRRRA---DGAEESA--LP--APWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQR 103 (662)
T ss_dssp EETTEEEEEEEETTTTTEEEEEEECT---TSCEEES--SC--TTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCC
T ss_pred EcCCeEEEEecCcccCCcEEEEEECC---CCCccee--CC--CCccccccccccCCccceeeeecCCCeEEEEEECCCCe
Confidence 45555555555 4478899999743 3444433 22 445555 55565 99998 776654 344
Q ss_pred EEEEeccCCcccccccceeeeeEEEecCCCeeeeecc--CCCCCCCeEEEEEe--CCEEEEEe-C----------CcEEE
Q 004924 398 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDI--AADPKDSISCFALR--GSHLFSAS-G----------GKISI 462 (723)
Q Consensus 398 i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~V~~v~~s--~~~l~s~s-d----------g~I~v 462 (723)
|.+|+... .| ++....... ...|...+.+++|+ |+.|++++ + ..|.+
T Consensus 104 l~~~~~~~----~g--------------~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~ 165 (662)
T 3azo_A 104 LYAFEPDA----PG--------------GAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAA 165 (662)
T ss_dssp EEEECTTS----TT--------------CCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEE
T ss_pred EEEEcCCC----CC--------------CCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEE
Confidence 44444320 00 011110000 00156678899999 88888887 5 58999
Q ss_pred EEcCC------CcEEEEEe-CCCCCeEEEEEcCCC-eEEEEECC--------CcEEEEeCC-CC---cEEEEEcCcCCcE
Q 004924 463 FSLET------FQTLATFA-NPPPIATYFILLPQD-LFAFGFDD--------SSILVHCPC-TK---KTKAKLKGHQNRI 522 (723)
Q Consensus 463 wd~~~------~~~~~~~~-~~~~~v~~l~~~p~~-~l~sgs~d--------g~I~iwd~~-~~---~~~~~l~~~~~~i 522 (723)
||+.+ ++. ..+. .+...+..++|+||| .|+.++.+ ..|++||+. ++ +......+|...+
T Consensus 166 ~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~ 244 (662)
T 3azo_A 166 VPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAI 244 (662)
T ss_dssp EETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCE
T ss_pred EECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceE
Confidence 99987 554 4555 555677889999999 88877754 379999998 57 4444445567889
Q ss_pred EEEEEcCCCCEEEEEeCCC--cEEEEeCCCCceeeceeeeeeecCCCCC-----CCCeEEEEEccCCCEEEEEcCCcEEE
Q 004924 523 TCLAYSLSLNVLVSSGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPE-----TTIVNHIQFHPDQIHLLSIHEGQIDV 595 (723)
Q Consensus 523 ~~l~~spdg~~l~s~s~dg--~I~vwd~~~~~~~~~~~l~~~~~~~~~~-----~~~v~~l~~spdg~~l~~s~dg~I~v 595 (723)
..+.|+|||+++++++.++ .|.+||+.+++... +..++... ...+.+++|+|++++++++.++.++|
T Consensus 245 ~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~------l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (662)
T 3azo_A 245 AQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ------LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVL 318 (662)
T ss_dssp EEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE------SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEE
T ss_pred cceEECCCCeEEEEECCCCCeEEEEEECCCCceee------cccccccccCccccccCceEeEeCCCEEEEEEEcCccEE
Confidence 9999999999888888888 56667765643211 22222100 01156789999999888853388888
Q ss_pred E--ECCCCceeEEecCCCCCCCeEEEEEeeCCcE--EEEEeCCC--cEEEEECCCCcEEEE
Q 004924 596 Y--EAPTLNHTSQLVPDKMDLPITYATYSCDGKC--IYVSCKSG--HVKVFDTSTLELRCQ 650 (723)
Q Consensus 596 w--d~~~~~~~~~~~~~~h~~~v~~l~~spdg~~--l~sgs~dg--~I~iwd~~~~~~~~~ 650 (723)
| |+.+++ +..+.. +...+..+ +++++.. +++++.+. .|++||+.+++....
T Consensus 319 ~~~d~~~~~-~~~l~~--~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 319 GILDPESGE-LVDAAG--PWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp EEEETTTTE-EEECCS--SCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred EEEECCCCc-EEEecC--CCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 8 665555 455543 35556655 1555543 33444443 577778878875443
No 180
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.61 E-value=1.7e-13 Score=145.59 Aligned_cols=240 Identities=9% Similarity=-0.016 Sum_probs=164.1
Q ss_pred EEEEe--CCEEEEEe-----------CCcEEEEEcCCCcEEEEEeCC------CCCeEEEEEcCCC-eEEEEEC--CCcE
Q 004924 444 CFALR--GSHLFSAS-----------GGKISIFSLETFQTLATFANP------PPIATYFILLPQD-LFAFGFD--DSSI 501 (723)
Q Consensus 444 ~v~~s--~~~l~s~s-----------dg~I~vwd~~~~~~~~~~~~~------~~~v~~l~~~p~~-~l~sgs~--dg~I 501 (723)
.++|+ ++++++++ ++.|.+||..+++.+..+... ......++++|+| +++++.. ++.|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 78999 78888774 457999999999998887632 2345688999999 8877764 5799
Q ss_pred EEEeCCCCcEEEE-EcCcCCcEEEEEEcCCC-CEEEEEeCCCcEEEEeCCC-CceeeceeeeeeecCCCCCCCCeEEEEE
Q 004924 502 LVHCPCTKKTKAK-LKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQF 578 (723)
Q Consensus 502 ~iwd~~~~~~~~~-l~~~~~~i~~l~~spdg-~~l~s~s~dg~I~vwd~~~-~~~~~~~~l~~~~~~~~~~~~~v~~l~~ 578 (723)
.+||+.+++.+.. +.. .+ ...+.+.|++ ..+++.+.||.+.+|+... ++.............. .....+.+
T Consensus 134 ~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~ 207 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVK----DDPIFIAP 207 (361)
T ss_dssp EEEETTTTEEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTT----TSCBCSCC
T ss_pred EEEECCCCcEEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCC----CCceEEEe
Confidence 9999999988877 542 22 2335677766 6788889999999999865 3322110000011111 11223344
Q ss_pred ccCCCEEEE-EcCCcEEEEECCCCce--eEEecCCC----CC----CCeEEEEEeeCCcEEEEEeC-----------CCc
Q 004924 579 HPDQIHLLS-IHEGQIDVYEAPTLNH--TSQLVPDK----MD----LPITYATYSCDGKCIYVSCK-----------SGH 636 (723)
Q Consensus 579 spdg~~l~~-s~dg~I~vwd~~~~~~--~~~~~~~~----h~----~~v~~l~~spdg~~l~sgs~-----------dg~ 636 (723)
+|++..++. +.++.+.++|+..... ...+.... +. .....++|+|+++.++++.. ++.
T Consensus 208 ~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~ 287 (361)
T 2oiz_A 208 ALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAE 287 (361)
T ss_dssp EECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSE
T ss_pred cccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCce
Confidence 677766665 5778999999875432 22221100 00 11112689999988887654 358
Q ss_pred EEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCC--ceeee
Q 004924 637 VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES--EVEWG 703 (723)
Q Consensus 637 I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~--~~~w~ 703 (723)
|.+||..+++.+.++.. .. .+ +++|+| ++++|++++. ++|.|||..++ +..-.
T Consensus 288 v~viD~~t~~~v~~i~~---------~~-p~--~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~ 342 (361)
T 2oiz_A 288 IWVMDTKTKQRVARIPG---------RD-AL--SMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRT 342 (361)
T ss_dssp EEEEETTTTEEEEEEEC---------TT-CC--EEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEE
T ss_pred EEEEECCCCcEEEEEec---------CC-ee--EEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEE
Confidence 99999999999988864 12 44 999999 8999988886 99999999998 65433
No 181
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.59 E-value=2e-11 Score=125.15 Aligned_cols=284 Identities=10% Similarity=0.043 Sum_probs=191.6
Q ss_pred eeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCe
Q 004924 363 CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI 442 (723)
Q Consensus 363 ~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 442 (723)
+..+.++. +...+.+++++++|+..++...++.|.+|+.. +.. ..+.. ..+...+
T Consensus 5 ~~~~~~~~--~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-----------~~~~~-----------~~~~~~~ 59 (299)
T 2z2n_A 5 LQELNLTN--QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-----------TEYPL-----------PTPDAKV 59 (299)
T ss_dssp EEEEECCS--SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-----------EEEEC-----------SSTTCCE
T ss_pred EEEEcCCC--cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-----------EEecC-----------CcccCce
Confidence 33344554 66789999999999977766667889888854 211 00110 0134678
Q ss_pred EEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEe--CCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEE-E
Q 004924 443 SCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-L 515 (723)
Q Consensus 443 ~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~--~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~-l 515 (723)
.+++++ |.++++.. ++.|..|+.. ++. ..+. .....+.++++.+++ .+++...++.|..||. +++.... .
T Consensus 60 ~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~ 136 (299)
T 2z2n_A 60 MCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYEL 136 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEEC
T ss_pred eeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecC
Confidence 889998 66666665 7889999986 443 3333 345678899999999 6666666889999998 5654433 2
Q ss_pred cCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEE
Q 004924 516 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQID 594 (723)
Q Consensus 516 ~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~ 594 (723)
......+..++++++|+..++...++.|..||. +++... .. ... .. ..+.+++++++|...++. .++.|.
T Consensus 137 ~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~-~~~-~~---~~~~~i~~~~~g~l~v~~~~~~~i~ 207 (299)
T 2z2n_A 137 PNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE---FK-IPT-PA---SGPVGITKGNDDALWFVEIIGNKIG 207 (299)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EE-CSS-TT---CCEEEEEECTTSSEEEEETTTTEEE
T ss_pred CCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---ee-CCC-CC---CcceeEEECCCCCEEEEccCCceEE
Confidence 334567899999999988777777889999998 543211 11 111 12 568899999999877665 578999
Q ss_pred EEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEe
Q 004924 595 VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAH 674 (723)
Q Consensus 595 vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~s 674 (723)
+||. +++.. .+....+...+.+++++++|+..++...++.|..||. +++. ..+... + +... +.++++
T Consensus 208 ~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~-----~-~~~~--~~~i~~- 274 (299)
T 2z2n_A 208 RITT-SGEIT-EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQ-----I-KSAE--PHGICF- 274 (299)
T ss_dssp EECT-TCCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECS-----S-SSCC--EEEEEE-
T ss_pred EECC-CCcEE-EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCC-----C-CCCc--cceEEe-
Confidence 9999 66643 3333234567899999999997766667899999998 4543 333211 1 1222 448888
Q ss_pred cCCCCEEEEEECCCcEEEEecCCC
Q 004924 675 PLEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 675 p~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
+ ++.++++.+ .+.+..+++.++
T Consensus 275 ~-~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 275 D-GETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp C-SSCEEEEET-TTEEEEEEEC--
T ss_pred c-CCCEEEEec-CCcEEEEEcCcc
Confidence 7 777766654 677888887664
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.59 E-value=3.3e-13 Score=142.17 Aligned_cols=254 Identities=9% Similarity=0.026 Sum_probs=167.7
Q ss_pred CCceEEEEEeCCCCEEEEEEC---------CCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEE
Q 004924 374 GGRVVRLIYSHSGDFLVALTQ---------TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC 444 (723)
Q Consensus 374 ~~~V~~l~fspdg~~las~s~---------dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 444 (723)
...+...++ ||++++.... ++.|.+|+.. ++..... ..+..
T Consensus 14 ~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~---------------------~~~~~~l-------~~~~~ 63 (347)
T 2gop_A 14 FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLK---------------------NNARRFI-------ENATM 63 (347)
T ss_dssp SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETT---------------------TCCEEEE-------ESCEE
T ss_pred eEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCC---------------------CCceEEc-------ccCCC
Confidence 445677778 9998877532 3445555544 3332211 34678
Q ss_pred EEEe--CCEEEEEe-C---Cc--EEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECC-----------------
Q 004924 445 FALR--GSHLFSAS-G---GK--ISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD----------------- 498 (723)
Q Consensus 445 v~~s--~~~l~s~s-d---g~--I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~d----------------- 498 (723)
++|+ |++|+.++ + +. |.+|++.+++.......+. +..++|+||| .|+.++.+
T Consensus 64 ~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 64 PRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp EEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC-
T ss_pred eEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceee
Confidence 8999 88888776 3 33 7788888877665554433 8999999999 77776632
Q ss_pred ----------CcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCC-------cEEEEeCCCCceeeceeeee
Q 004924 499 ----------SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-------QLCVWDAVGWKKLCSKFLHS 561 (723)
Q Consensus 499 ----------g~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg-------~I~vwd~~~~~~~~~~~l~~ 561 (723)
..|++||+.+++.+..+.. . .+..+.|+||| .+++++.++ ...+|.+.+++. ..
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~---~~--- 212 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE---EK--- 212 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE---EE---
T ss_pred cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce---EE---
Confidence 5799999998887455554 3 78899999999 777776542 334444434321 11
Q ss_pred eecCCCCCCCCeEEEEEccCCCEEEE-EcC--------CcEEEEECCCCceeEEecCCCCCCCeEE-EEEeeCCcEEEEE
Q 004924 562 FQTGLVPETTIVNHIQFHPDQIHLLS-IHE--------GQIDVYEAPTLNHTSQLVPDKMDLPITY-ATYSCDGKCIYVS 631 (723)
Q Consensus 562 ~~~~~~~~~~~v~~l~~spdg~~l~~-s~d--------g~I~vwd~~~~~~~~~~~~~~h~~~v~~-l~~spdg~~l~sg 631 (723)
+..+ . .+..+ +|||++|+. +.+ ..|++|| +++.. .+.. .+...+.. +.|+ |+ +++++
T Consensus 213 l~~~-~----~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~-~~~~~~~~~~~~s-dg-~~~~~ 279 (347)
T 2gop_A 213 MFEK-V----SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM-GILD-EVDRGVGQAKIKD-GK-VYFTL 279 (347)
T ss_dssp EEEE-E----SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-ESST-TCCSEEEEEEEET-TE-EEEEE
T ss_pred eccC-c----ceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE-eccc-cCCcccCCccEEc-Cc-EEEEE
Confidence 2211 1 23343 999998876 432 3688888 55543 3322 34667776 8999 88 88899
Q ss_pred eCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcE-EEEecC
Q 004924 632 CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRV-HVIEPL 696 (723)
Q Consensus 632 s~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v-~iWd~~ 696 (723)
+.++.+++| +.+++...... + ... +.+++|+| .++++++.++.. .||.+.
T Consensus 280 ~~~~~~~l~-~~~g~~~~~~~-------~--~~~--v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 280 FEEGSVNLY-IWDGEIKPIAK-------G--RHW--IMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EETTEEEEE-EESSSEEEEEC-------S--SSE--EEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred ecCCcEEEE-EcCCceEEEec-------C--CCe--EEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 999999999 87666543332 1 233 34889988 577777777765 788776
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.57 E-value=7.5e-13 Score=139.40 Aligned_cols=246 Identities=12% Similarity=0.049 Sum_probs=159.7
Q ss_pred CCCEEEEEe---------CCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECC---Cc--EEEE
Q 004924 336 DADSAVCAK---------SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---AT--HKLW 401 (723)
Q Consensus 336 dg~~la~~s---------~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~d---g~--i~iW 401 (723)
||+.++... .++.|.+|++.+ +..+.+ ..+..++|||||++||.++.+ +. |.+|
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~----~~~~~l--------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~ 90 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKN----NARRFI--------ENATMPRISPDGKKIAFMRANEEKKVSEIWVA 90 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTT----CCEEEE--------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEE
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCC----CceEEc--------ccCCCeEECCCCCEEEEEEeccCCCcceEEEE
Confidence 788887753 245678888874 333333 357889999999999988764 34 4444
Q ss_pred eccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-C---------------------
Q 004924 402 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G--------------------- 457 (723)
Q Consensus 402 d~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-d--------------------- 457 (723)
++. ++....... +.. +.+++|+ |+.|+.++ +
T Consensus 91 ~~~---------------------~g~~~~l~~---~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~ 145 (347)
T 2gop_A 91 DLE---------------------TLSSKKILE---AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLG 145 (347)
T ss_dssp ETT---------------------TTEEEEEEE---ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC-----
T ss_pred ECC---------------------CCceEEEEc---CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcc
Confidence 433 333222111 223 8899999 77787776 3
Q ss_pred ------CcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECC---------CcEEEEeCCCCcEEEEEcCcCCcE
Q 004924 458 ------GKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDD---------SSILVHCPCTKKTKAKLKGHQNRI 522 (723)
Q Consensus 458 ------g~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~d---------g~I~iwd~~~~~~~~~l~~~~~~i 522 (723)
..|.+||+.+++.+..+.. . .+..++|+|+|.++++..+ ..|.++| +++. ..+..+ ..+
T Consensus 146 ~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~-~~~ 219 (347)
T 2gop_A 146 FFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKE-EKMFEK-VSF 219 (347)
T ss_dssp ----CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEE-EEEEEE-ESE
T ss_pred cccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC--CCce-EEeccC-cce
Confidence 4689999998877455544 3 7789999999933344433 1455555 5544 344434 555
Q ss_pred EEEEEcCCCCEEEEEeCC--------CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEE-EEEccCCCEEEE-EcCCc
Q 004924 523 TCLAYSLSLNVLVSSGAD--------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNH-IQFHPDQIHLLS-IHEGQ 592 (723)
Q Consensus 523 ~~l~~spdg~~l~s~s~d--------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~-l~~spdg~~l~~-s~dg~ 592 (723)
..+ +|||+.++.++.+ ..|.+|| +++. ..+..++. ..+.. +.|+ ++ .+++ +.++.
T Consensus 220 ~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~------~~l~~~~~---~~~~~~~~~s-dg-~~~~~~~~~~ 284 (347)
T 2gop_A 220 YAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV------MGILDEVD---RGVGQAKIKD-GK-VYFTLFEEGS 284 (347)
T ss_dssp EEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE------EESSTTCC---SEEEEEEEET-TE-EEEEEEETTE
T ss_pred eeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce------EeccccCC---cccCCccEEc-Cc-EEEEEecCCc
Confidence 554 9999998887754 3688888 4321 11333333 56776 8999 88 6666 57889
Q ss_pred EEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcE-EEEECCCCc
Q 004924 593 IDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV-KVFDTSTLE 646 (723)
Q Consensus 593 I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I-~iwd~~~~~ 646 (723)
+++| +.+++..... . +...|.+++|+| .++++++.++.. .+|.+. ++
T Consensus 285 ~~l~-~~~g~~~~~~-~--~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 285 VNLY-IWDGEIKPIA-K--GRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp EEEE-EESSSEEEEE-C--SSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred EEEE-EcCCceEEEe-c--CCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence 9999 8766653333 2 367789999999 677777777654 667666 55
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.57 E-value=6.1e-13 Score=154.79 Aligned_cols=278 Identities=12% Similarity=0.038 Sum_probs=182.3
Q ss_pred CCCCCEEEEEeCCCe---EEEEeecccCCCCceeEE----ecCCCCCCCceEEEEEeCCCCEEEEEECCC-----cEEEE
Q 004924 334 LPDADSAVCAKSLEK---SVNLKLQLINEPSECRTL----LLPDNSFGGRVVRLIYSHSGDFLVALTQTA-----THKLW 401 (723)
Q Consensus 334 spdg~~la~~s~dg~---v~iw~~~~~~~~~~~~~~----~l~~~~h~~~V~~l~fspdg~~las~s~dg-----~i~iW 401 (723)
+|+|++++....++. -.+|..... .+....+ .+. .+|...+..++|||||++||.++.++ .|++|
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~lld~~~l~-~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~ 156 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSL--EGEARVFLDPNILS-DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFM 156 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESST--TSCCEEEECGGGGC-TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEE
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCC--CCCcEEEECHHHhc-cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 478888887765432 255655421 1222222 111 23555788999999999999877643 78888
Q ss_pred eccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCc----------------EEE
Q 004924 402 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGK----------------ISI 462 (723)
Q Consensus 402 d~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~----------------I~v 462 (723)
|+.++.. ..... ....+..++|+ |+.|+.++ ++. |++
T Consensus 157 d~~tg~~---------------------~~~~~---~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~ 212 (710)
T 2xdw_A 157 KVDGAKE---------------------LPDVL---ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYY 212 (710)
T ss_dssp ETTTTEE---------------------EEEEE---EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEE
T ss_pred ECCCCCC---------------------Ccccc---cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEE
Confidence 8764322 11111 11125678999 78888877 655 999
Q ss_pred EEcCCCcE--EEEEeC--CCCCeEEEEEcCCC-eEEEEEC-----CCcEEEEeCCC------Cc-EEEEEcCcCCcEEEE
Q 004924 463 FSLETFQT--LATFAN--PPPIATYFILLPQD-LFAFGFD-----DSSILVHCPCT------KK-TKAKLKGHQNRITCL 525 (723)
Q Consensus 463 wd~~~~~~--~~~~~~--~~~~v~~l~~~p~~-~l~sgs~-----dg~I~iwd~~~------~~-~~~~l~~~~~~i~~l 525 (723)
|++.+++. ...+.. +...+..+.|+||| .|+.++. +..|++||+.+ +. ....+..+...+..
T Consensus 213 ~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~- 291 (710)
T 2xdw_A 213 HVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD- 291 (710)
T ss_dssp EETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-
T ss_pred EECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-
Confidence 99988763 233332 45567899999999 7776654 56899999986 53 35566666665555
Q ss_pred EEcCCCCEEEEEeCC----CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCC--cEEEEEC
Q 004924 526 AYSLSLNVLVSSGAD----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--QIDVYEA 598 (723)
Q Consensus 526 ~~spdg~~l~s~s~d----g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg--~I~vwd~ 598 (723)
.|+|+|+.++..+.+ +.|.+||+.++.... ...+...+.. ..+.+++|++++.++++. .++ .|++||+
T Consensus 292 ~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~---~~~l~~~~~~--~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~ 366 (710)
T 2xdw_A 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESK---WKVLVPEHEK--DVLEWVACVRSNFLVLCYLHDVKNTLQLHDL 366 (710)
T ss_dssp EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGG---CEEEECCCSS--CEEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccc---ceeccCCCCC--CeEEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence 488999888777653 359999998753211 1222222210 257789999777666664 666 5778888
Q ss_pred CCCceeEEecCCCCCCCeEEEEEeeCCcEEEEE-e---CCCcEEEEECCCCc
Q 004924 599 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-C---KSGHVKVFDTSTLE 646 (723)
Q Consensus 599 ~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sg-s---~dg~I~iwd~~~~~ 646 (723)
.+++.+..+.. +...+..++++|++..++.. + ..+.|+.||+.+++
T Consensus 367 ~~g~~~~~l~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 367 ATGALLKIFPL--EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TTCCEEEEECC--CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCCCEEEecCC--CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 77887677654 36678889999999766633 2 34899999999887
No 185
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.57 E-value=1.4e-13 Score=159.72 Aligned_cols=278 Identities=9% Similarity=-0.064 Sum_probs=176.8
Q ss_pred cCCCCCEEEEEeCCC---eEEEEeecccCCCCceeEEecC---CCCCCCceEEEEEeCCCCEEEEE-----ECCCcEEEE
Q 004924 333 SLPDADSAVCAKSLE---KSVNLKLQLINEPSECRTLLLP---DNSFGGRVVRLIYSHSGDFLVAL-----TQTATHKLW 401 (723)
Q Consensus 333 ~spdg~~la~~s~dg---~v~iw~~~~~~~~~~~~~~~l~---~~~h~~~V~~l~fspdg~~las~-----s~dg~i~iW 401 (723)
.+|+|++++....++ .-.+|..... .+..+.+.-+ ..+|...+..++|||||++||.+ +.+.+|++|
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~ 152 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGE--SGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVI 152 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEEST--TSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCC--CCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEE
Confidence 458899998887765 3566765421 2333333111 02366679999999999999944 334689998
Q ss_pred eccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCC--eEEEEEe--CCEEEEEe-CCc-------------EEEE
Q 004924 402 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS--ISCFALR--GSHLFSAS-GGK-------------ISIF 463 (723)
Q Consensus 402 d~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~v~~s--~~~l~s~s-dg~-------------I~vw 463 (723)
|+.++.. ... .+... ...++|+ |+.|+.++ +.. |++|
T Consensus 153 dl~tg~~---------------------~~~----~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~ 207 (695)
T 2bkl_A 153 DVDSGEW---------------------SKV----DVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYH 207 (695)
T ss_dssp ETTTCCB---------------------CSS----CCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEE
T ss_pred ECCCCCC---------------------cCC----cccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEE
Confidence 8875432 100 01111 2578899 78888887 665 9999
Q ss_pred EcCCCcE--EEEEe--CCCCCeEEEEEcCCC-eEEEEECCC----cEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEE
Q 004924 464 SLETFQT--LATFA--NPPPIATYFILLPQD-LFAFGFDDS----SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 534 (723)
Q Consensus 464 d~~~~~~--~~~~~--~~~~~v~~l~~~p~~-~l~sgs~dg----~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l 534 (723)
++.++.. ...+. .+...+..+.|+||| .|+.++.++ .|++|+..+++. ..+..+...+....+ ++|. +
T Consensus 208 ~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~-l 284 (695)
T 2bkl_A 208 TLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDR-F 284 (695)
T ss_dssp ETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTE-E
T ss_pred ECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCc-E
Confidence 9988762 23333 445678899999999 777666555 788887666654 344445555666666 5666 5
Q ss_pred EEEeC----CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECC-CCceeEEec
Q 004924 535 VSSGA----DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP-TLNHTSQLV 608 (723)
Q Consensus 535 ~s~s~----dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~-~~~~~~~~~ 608 (723)
+..+. ++.|.+||+.++.... ...+...+.. ..+.+++|+ ++..+++ ..++..++|.+. +++....+.
T Consensus 285 ~~~s~~~~~~~~l~~~d~~~~~~~~---~~~l~~~~~~--~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~ 358 (695)
T 2bkl_A 285 YVLTDEGAPRQRVFEVDPAKPARAS---WKEIVPEDSS--ASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQ 358 (695)
T ss_dssp EEEECTTCTTCEEEEEBTTBCSGGG---CEEEECCCSS--CEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECC
T ss_pred EEEECCCCCCCEEEEEeCCCCCccC---CeEEecCCCC--CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEec
Confidence 44443 5789999998753211 1212222211 467888888 5556666 477776666543 455555554
Q ss_pred CCCCCCCeEEEEEeeCCcEEEEEe----CCCcEEEEECCCCcE
Q 004924 609 PDKMDLPITYATYSCDGKCIYVSC----KSGHVKVFDTSTLEL 647 (723)
Q Consensus 609 ~~~h~~~v~~l~~spdg~~l~sgs----~dg~I~iwd~~~~~~ 647 (723)
.+ ....+..++++|+++.++... ..+.|++||+.+++.
T Consensus 359 ~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 359 LP-GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp CS-SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 32 255677888999998776332 347899999998874
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.57 E-value=9.1e-13 Score=153.28 Aligned_cols=242 Identities=9% Similarity=-0.018 Sum_probs=167.1
Q ss_pred CCCCCeEEEEEe--CCEEEEEe--CC----cEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCc-------
Q 004924 437 DPKDSISCFALR--GSHLFSAS--GG----KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSS------- 500 (723)
Q Consensus 437 ~h~~~V~~v~~s--~~~l~s~s--dg----~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~------- 500 (723)
+|...+..++|| |++||.+. +| +|++||+.+++.......+. .+..++|+||| .|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEeCCCEEEEEEECCcccccccc
Confidence 355568899999 88888776 33 89999999998766432221 25678999999 8888887765
Q ss_pred ---------EEEEeCCCCcE--EEEEcC--cCCcEEEEEEcCCCCEEEEEeC-----CCcEEEEeCCC------Cceeec
Q 004924 501 ---------ILVHCPCTKKT--KAKLKG--HQNRITCLAYSLSLNVLVSSGA-----DAQLCVWDAVG------WKKLCS 556 (723)
Q Consensus 501 ---------I~iwd~~~~~~--~~~l~~--~~~~i~~l~~spdg~~l~s~s~-----dg~I~vwd~~~------~~~~~~ 556 (723)
|++|++.+++. ...+.. |...+..+.|+|||++|+.++. +..|++||+.+ +..
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~--- 277 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL--- 277 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC---
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc---
Confidence 99999988762 233333 5566889999999999888765 56899999976 321
Q ss_pred eeeeeeecCCCCCCCCeEEEEEccCCCEEEE-Ec----CCcEEEEECCCCce--eEEecCCCCCCCeEEEEEeeCCcEEE
Q 004924 557 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH----EGQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIY 629 (723)
Q Consensus 557 ~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~----dg~I~vwd~~~~~~--~~~~~~~~h~~~v~~l~~spdg~~l~ 629 (723)
....+..+. ..+.. .|+|+|..|+. +. .+.|.+||+.++.. ...+..+.....+..++|++++.+++
T Consensus 278 -~~~~l~~~~----~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 278 -KWVKLIDNF----EGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp -CCEEEECSS----SSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred -ceEEeeCCC----CcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 122222222 23433 58899988876 43 23699999987642 23444322123678899998888888
Q ss_pred EEeCCCc--EEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEE-EEE---CCCcEEEEecCCCc
Q 004924 630 VSCKSGH--VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LGL---TNGRVHVIEPLESE 699 (723)
Q Consensus 630 sgs~dg~--I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la-s~s---~Dg~v~iWd~~~~~ 699 (723)
++..|+. |++|++.+|+....+..+ .+. +..++++| ++..++ +.+ ..++|+.||+.+++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--------~~~--v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--------VGS--VVGYSGQK-KDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--------SSE--EEEEECCT-TCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--------Cce--EEEEecCC-CCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8888884 667787778766666531 222 44788999 676555 333 34799999998876
No 187
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.54 E-value=2.4e-13 Score=157.76 Aligned_cols=240 Identities=9% Similarity=-0.006 Sum_probs=160.2
Q ss_pred CCCCCeEEEEEe--CCEEEEEe------CCcEEEEEcCCCcEE-EEEeCCCCCeEEEEEcCCC-eEEEEECCCc------
Q 004924 437 DPKDSISCFALR--GSHLFSAS------GGKISIFSLETFQTL-ATFANPPPIATYFILLPQD-LFAFGFDDSS------ 500 (723)
Q Consensus 437 ~h~~~V~~v~~s--~~~l~s~s------dg~I~vwd~~~~~~~-~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~------ 500 (723)
+|...+.+++|| |++||.+. +.+|++||+.+++.+ ..... ......++|+||| .|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~-~~~~~~~~wspDg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE-GGKYATPKWTPDSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS-CCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC-cccccceEEecCCCEEEEEEecCCCCCccc
Confidence 466678899999 88887443 257999999998864 21111 1112578999999 8888888776
Q ss_pred -------EEEEeCCCCc----EEEEEcCcCCcEEEEEEcCCCCEEEEEeCCC----cEEEEeCCCCceeeceeeeeeecC
Q 004924 501 -------ILVHCPCTKK----TKAKLKGHQNRITCLAYSLSLNVLVSSGADA----QLCVWDAVGWKKLCSKFLHSFQTG 565 (723)
Q Consensus 501 -------I~iwd~~~~~----~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg----~I~vwd~~~~~~~~~~~l~~~~~~ 565 (723)
|++|++.++. .+.....+...+..+.|+|||++|+.++.++ .|++||..++. ...+...
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~------~~~l~~~ 270 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD------FRLLVKG 270 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS------CEEEEEC
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc------eEEeecC
Confidence 9999998876 3333334556789999999999988887666 67777665532 1212222
Q ss_pred CCCCCCCeEEEEEccCCCEEEE-Ec----CCcEEEEECCCCce--eEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEE
Q 004924 566 LVPETTIVNHIQFHPDQIHLLS-IH----EGQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK 638 (723)
Q Consensus 566 ~~~~~~~v~~l~~spdg~~l~~-s~----dg~I~vwd~~~~~~--~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~ 638 (723)
. ..+....+ ++|. ++. +. ++.|.+||+.++.. ...+..+.....+..++|+ ++.++++...|+..+
T Consensus 271 ~----~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 271 V----GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSE 343 (695)
T ss_dssp S----SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred C----CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 2 34555556 6666 554 42 47899999987653 2334332224567888888 778888999999888
Q ss_pred EEECC-CCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEE-EEE---CCCcEEEEecCCCce
Q 004924 639 VFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LGL---TNGRVHVIEPLESEV 700 (723)
Q Consensus 639 iwd~~-~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la-s~s---~Dg~v~iWd~~~~~~ 700 (723)
+|.+. +++....+..+ ....+. .++++| +++.++ +.+ ..++|++||+.+++.
T Consensus 344 l~~~~~~g~~~~~l~~~-------~~~~v~--~~~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 344 VRVATLKGKPVRTVQLP-------GVGAAS--NLMGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEETTCCEEEECCCS-------SSSEEC--CCBSCT-TCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEeCCCCeeEEecCC-------CCeEEE--EeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 88655 35545544321 122333 678889 676665 332 347899999988764
No 188
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.54 E-value=5.1e-12 Score=132.31 Aligned_cols=264 Identities=10% Similarity=0.032 Sum_probs=172.4
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccc
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 412 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~ 412 (723)
++|++..++..+.++.++.|.- ..... +.. +...+.+++|+|+|+.++++..++.|.+||..++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~--~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~---- 78 (333)
T 2dg1_A 13 YSGKSNSAVPIISESELQTITA------EPWLE--ISK--KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI---- 78 (333)
T ss_dssp SCGGGGCSSCCCCGGGSCEEEC------EEEEE--EES--SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE----
T ss_pred ecCCccceeEEeecccCccccc------ceeEE--Eec--cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE----
Confidence 4444444555566777888831 22222 222 566789999999999777888889999988653221
Q ss_pred cceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-C----CcEEEEEcCCCcEEEEEe--CCCCCeEE
Q 004924 413 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G----GKISIFSLETFQTLATFA--NPPPIATY 483 (723)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-d----g~I~vwd~~~~~~~~~~~--~~~~~v~~ 483 (723)
..... .+...+.+++++ |++++++. + +.|.+||..++.....+. .+...+.+
T Consensus 79 -----------------~~~~~--~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 139 (333)
T 2dg1_A 79 -----------------KRPFV--SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDD 139 (333)
T ss_dssp -----------------EEEEE--CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEE
T ss_pred -----------------EEEee--CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccc
Confidence 11000 245679999998 66666665 4 589999998876654443 34457899
Q ss_pred EEEcCCC-eEEEEEC------CCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEE-eCCCcEEEEeCCC-Ccee
Q 004924 484 FILLPQD-LFAFGFD------DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVG-WKKL 554 (723)
Q Consensus 484 l~~~p~~-~l~sgs~------dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~-s~dg~I~vwd~~~-~~~~ 554 (723)
++++|+| .+++... .+.|..+|..+++..... .....+..++|+|+|+.++.+ +.++.|.+||+.+ +...
T Consensus 140 i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~ 218 (333)
T 2dg1_A 140 MVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTI 218 (333)
T ss_dssp EEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSE
T ss_pred eEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCc
Confidence 9999999 5555443 356777777665544332 233457899999999866544 5678999999964 2221
Q ss_pred ece--eeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecCCC----CCCCeEEEEEeeCCcE
Q 004924 555 CSK--FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK----MDLPITYATYSCDGKC 627 (723)
Q Consensus 555 ~~~--~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~----h~~~v~~l~~spdg~~ 627 (723)
... .......++ ..+..++++++|.++++. .++.|.+||. +++.+..+.... |...+.+++|+||++.
T Consensus 219 ~~~~~~~~~~~~~~----~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~ 293 (333)
T 2dg1_A 219 QPFGATIPYYFTGH----EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQ 293 (333)
T ss_dssp EEEEEEEEEECCSS----SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCE
T ss_pred ccccceEEEecCCC----CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCE
Confidence 110 011001111 357889999999877774 6789999998 566666664321 1125889999999887
Q ss_pred EEEEeCCC
Q 004924 628 IYVSCKSG 635 (723)
Q Consensus 628 l~sgs~dg 635 (723)
|++++.++
T Consensus 294 L~v~~~~g 301 (333)
T 2dg1_A 294 LIICSNDI 301 (333)
T ss_dssp EEEEEECG
T ss_pred EEEEeCcc
Confidence 77666553
No 189
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.53 E-value=5.6e-12 Score=131.99 Aligned_cols=266 Identities=11% Similarity=0.017 Sum_probs=177.7
Q ss_pred CCeEEEEeecccCCCCceeEEecC---CCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEE
Q 004924 346 LEKSVNLKLQLINEPSECRTLLLP---DNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLY 422 (723)
Q Consensus 346 dg~v~iw~~~~~~~~~~~~~~~l~---~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~ 422 (723)
+++|.+||..+ ++.....+. +.........+++.. ++..++...++.|.+||..+.
T Consensus 16 ~~~l~~~d~~t----~~~~~~i~~~~n~~~lg~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~---------------- 74 (328)
T 3dsm_A 16 NATLSYYDPAT----CEVENEVFYRANGFKLGDVAQSMVIRD-GIGWIVVNNSHVIFAIDINTF---------------- 74 (328)
T ss_dssp CBEEEEEETTT----TEEECSHHHHHHSSCCBSCEEEEEEET-TEEEEEEGGGTEEEEEETTTC----------------
T ss_pred CceEEEEECCC----CEEhhhhHhhhcCcccCccceEEEEEC-CEEEEEEcCCCEEEEEECccc----------------
Confidence 78899999874 333221110 101234567788743 444455555789988887632
Q ss_pred ecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe--CCcEEEEEcCCCcEEEEEeCCC-----CCeEEEEEcCCCeEEE
Q 004924 423 QPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS--GGKISIFSLETFQTLATFANPP-----PIATYFILLPQDLFAF 494 (723)
Q Consensus 423 ~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~~-----~~v~~l~~~p~~~l~s 494 (723)
+.+..+. .......++++ +..++++. ++.|.+||..+++....+.... .....+++ .++.+++
T Consensus 75 -----~~~~~i~---~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv 145 (328)
T 3dsm_A 75 -----KEVGRIT---GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYV 145 (328)
T ss_dssp -----CEEEEEE---CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEE
T ss_pred -----EEEEEcC---CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEE
Confidence 2222111 33567889996 44555554 8999999999999887776332 13446666 3444444
Q ss_pred EE--CCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCC----------CcEEEEeCCCCceeeceeeeee
Q 004924 495 GF--DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD----------AQLCVWDAVGWKKLCSKFLHSF 562 (723)
Q Consensus 495 gs--~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~d----------g~I~vwd~~~~~~~~~~~l~~~ 562 (723)
+. .++.|.++|..+++.+..+... .....+.++|+|++++++..+ +.|.++|..+++.... +. +
T Consensus 146 ~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~--~~-~ 221 (328)
T 3dsm_A 146 NCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQ--FK-F 221 (328)
T ss_dssp EECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEE--EE-C
T ss_pred EcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEE--Ee-c
Confidence 44 4889999999999988877643 345688999999877766554 7899999988643221 11 1
Q ss_pred ecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeC-CcEEEEE----eCCCcE
Q 004924 563 QTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD-GKCIYVS----CKSGHV 637 (723)
Q Consensus 563 ~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spd-g~~l~sg----s~dg~I 637 (723)
..+ .....++++|+++.++++.. .|.+||..+++................++++|+ +...++. ..++.|
T Consensus 222 ~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V 295 (328)
T 3dsm_A 222 KLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV 295 (328)
T ss_dssp CTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred CCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence 112 35789999999999988654 999999988875321111111467889999994 5555555 568999
Q ss_pred EEEECCCCcEEEEee
Q 004924 638 KVFDTSTLELRCQIN 652 (723)
Q Consensus 638 ~iwd~~~~~~~~~~~ 652 (723)
.+||.. |+.+..+.
T Consensus 296 ~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 296 YRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEECTT-CCEEEEEE
T ss_pred EEECCC-CCEEEEEE
Confidence 999998 88888875
No 190
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.52 E-value=5.9e-12 Score=129.56 Aligned_cols=230 Identities=11% Similarity=-0.044 Sum_probs=162.0
Q ss_pred CCCCeEEEEEe--CC-EEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEE
Q 004924 438 PKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 512 (723)
Q Consensus 438 h~~~V~~v~~s--~~-~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~ 512 (723)
+.....+++|+ ++ +++++. ++.|..|+..++ ...+..+...+.+++++|+| .+++...++.|.+||..+++..
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE 103 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence 45667889999 66 666666 899999999877 66777777889999999999 7666666789999999888765
Q ss_pred EEEcCc----CCcEEEEEEcCCCCEEEEEeC-----------------CCcEEEEeCCCCceeeceeeeeeecCCCCCCC
Q 004924 513 AKLKGH----QNRITCLAYSLSLNVLVSSGA-----------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 571 (723)
Q Consensus 513 ~~l~~~----~~~i~~l~~spdg~~l~s~s~-----------------dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~ 571 (723)
...... ...+++++++|+|+++++.+. .+.|..++.. +.. ..+.. +. .
T Consensus 104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~------~~~~~-~~---~ 172 (296)
T 3e5z_A 104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL------SAPIR-DR---V 172 (296)
T ss_dssp EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE------EEEEC-CC---S
T ss_pred EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE------EEeec-CC---C
Confidence 443321 234678999999998887321 2455555554 321 11222 22 4
Q ss_pred CeEEEEEccCCCEEEEE-cCCcEEEEECC-CCce---eEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCc
Q 004924 572 IVNHIQFHPDQIHLLSI-HEGQIDVYEAP-TLNH---TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 646 (723)
Q Consensus 572 ~v~~l~~spdg~~l~~s-~dg~I~vwd~~-~~~~---~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~ 646 (723)
....++|+|+|+.+++. .++.|++||+. +++. ...+ . .+...+..++++++|+++++. ++.|.+|+.. ++
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~-~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~ 247 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-T-VEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GD 247 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-C-CSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SC
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-e-CCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CC
Confidence 67899999999988554 67899999996 5554 3333 2 235567789999999866666 7899999987 77
Q ss_pred EEEEeecccccCCCCccCccceEEEEE-ecCCCCEEEEEECCCcEEEEecCCC
Q 004924 647 LRCQINLTAYAQPGTISLELYPLVIAA-HPLEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 647 ~~~~~~~~~~~~~g~~~~~v~~~~v~~-sp~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
.+..+..+ .. +.+++| .| +++.|.+++.++ +.-+++.+.
T Consensus 248 ~~~~~~~~--------~~---~~~~~f~~~-d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 248 ELGRVLTP--------QT---TSNLCFGGP-EGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp EEEEEECS--------SC---CCEEEEEST-TSCEEEEEETTE-EEEEECSCC
T ss_pred EEEEEECC--------CC---ceeEEEECC-CCCEEEEEcCCe-EEEEEcccc
Confidence 76666532 22 348899 47 788888888763 444455443
No 191
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.50 E-value=8.4e-12 Score=128.39 Aligned_cols=235 Identities=11% Similarity=0.059 Sum_probs=165.2
Q ss_pred CCCceEEEEEeCCCC-EEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--C
Q 004924 373 FGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 449 (723)
Q Consensus 373 h~~~V~~l~fspdg~-~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~ 449 (723)
+.....+++|+|+|+ .++++..++.|..|+..++ . ..|. .+...+.+++++ |
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-----------~~~~-------------~~~~~~~~l~~~~dg 80 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-----------SPEM-------------HPSHHQNGHCLNKQG 80 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-----------EEEE-------------SSCSSEEEEEECTTC
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-----------EEEE-------------CCCCCcceeeECCCC
Confidence 456678999999998 6777777899999886532 1 1111 255678899998 6
Q ss_pred CEEEEEe-CCcEEEEEcCCCcEEEEEeCC----CCCeEEEEEcCCC-eEEE----EE-------------CCCcEEEEeC
Q 004924 450 SHLFSAS-GGKISIFSLETFQTLATFANP----PPIATYFILLPQD-LFAF----GF-------------DDSSILVHCP 506 (723)
Q Consensus 450 ~~l~s~s-dg~I~vwd~~~~~~~~~~~~~----~~~v~~l~~~p~~-~l~s----gs-------------~dg~I~iwd~ 506 (723)
+++++.. ++.|.+||..+++........ ...+..++++|+| .+++ |+ ..+.|..++.
T Consensus 81 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 160 (296)
T 3e5z_A 81 HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP 160 (296)
T ss_dssp CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC
Confidence 6666655 689999999888765443211 2345679999999 6666 32 1346777776
Q ss_pred CCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCce-eeceeeeeeecCCCCCCCCeEEEEEccCCCE
Q 004924 507 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV-GWKK-LCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 584 (723)
Q Consensus 507 ~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~-~~~~-~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~ 584 (723)
. ++. ..+..+......++|+|+|+.+++.+.++.|.+||+. ++.. ..... + ..+. ..+..++++++|++
T Consensus 161 ~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~---~-~~~~---~~p~~i~~d~~G~l 231 (296)
T 3e5z_A 161 D-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVH---F-TVEP---GKTDGLRVDAGGLI 231 (296)
T ss_dssp T-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEE---E-CCSS---SCCCSEEEBTTSCE
T ss_pred C-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeE---e-eCCC---CCCCeEEECCCCCE
Confidence 5 543 4445566678999999999988777778999999997 4432 11111 1 2222 45678999999987
Q ss_pred EEEEcCCcEEEEECCCCceeEEecCCCCCCCeEEEEE-eeCCcEEEEEeCCCcEEEEECCCCcE
Q 004924 585 LLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY-SCDGKCIYVSCKSGHVKVFDTSTLEL 647 (723)
Q Consensus 585 l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~-spdg~~l~sgs~dg~I~iwd~~~~~~ 647 (723)
.++. ++.|.+||.. ++.+..+..+ .. +.+++| +|+++.|++++.+ .+.-++..+.++
T Consensus 232 ~v~~-~~~v~~~~~~-g~~~~~~~~~--~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 232 WASA-GDGVHVLTPD-GDELGRVLTP--QT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp EEEE-TTEEEEECTT-SCEEEEEECS--SC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred EEEc-CCeEEEECCC-CCEEEEEECC--CC-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 7767 8899999986 7777777542 44 889999 5899999988875 465666666554
No 192
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.49 E-value=1.8e-11 Score=128.88 Aligned_cols=281 Identities=13% Similarity=0.085 Sum_probs=185.6
Q ss_pred cCCCCCEEEEEeC-----CCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEE----------CCCc
Q 004924 333 SLPDADSAVCAKS-----LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QTAT 397 (723)
Q Consensus 333 ~spdg~~la~~s~-----dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s----------~dg~ 397 (723)
..|+++.+.++.. ++.|.+.|..+ .+.... ++. -..+ .+++||||++++.++ .++.
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t----~~v~~~-I~v--G~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~ 110 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEA----GRVIGM-IDG--GFLP--NPVVADDGSFIAHASTVFSRIARGERTDY 110 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTT----TEEEEE-EEE--CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCC----CeEEEE-EEC--CCCC--cEEECCCCCEEEEEcccccccccCCCCCE
Confidence 6799999988876 57899999874 333222 221 1223 499999999888775 3567
Q ss_pred EEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCC-----CCCCeEEEEEe--CCEEEEEe---CCcEEEEEcCC
Q 004924 398 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAAD-----PKDSISCFALR--GSHLFSAS---GGKISIFSLET 467 (723)
Q Consensus 398 i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~V~~v~~s--~~~l~s~s---dg~I~vwd~~~ 467 (723)
|.+||..+... +..+.... .......++++ |++++++. ++.|.++|+.+
T Consensus 111 VsviD~~t~~v---------------------~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t 169 (386)
T 3sjl_D 111 VEVFDPVTLLP---------------------TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG 169 (386)
T ss_dssp EEEECTTTCCE---------------------EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT
T ss_pred EEEEECCCCeE---------------------EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCC
Confidence 88888764322 21111000 11234468888 88877775 47899999999
Q ss_pred CcEEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCC-CcEEEEEcCc----CCcEE-EEEEc-CCCCEEEEEe
Q 004924 468 FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAKLKGH----QNRIT-CLAYS-LSLNVLVSSG 538 (723)
Q Consensus 468 ~~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~-~~~~~~l~~~----~~~i~-~l~~s-pdg~~l~s~s 538 (723)
++.+.++.... |....|.+ .+++.+.||.+.+.++.+ ++.......+ ..++. ...|. ++|+.++ .+
T Consensus 170 ~~vv~tI~v~g----~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs 244 (386)
T 3sjl_D 170 KAFKRMLDVPD----CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PT 244 (386)
T ss_dssp TEEEEEEECCS----EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EB
T ss_pred CcEEEEEECCC----cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-Ee
Confidence 99999886432 12233544 777888899999999876 5553322111 12222 23564 6775444 66
Q ss_pred CCCcEEEEeCCCCceeeceeee--e---eecCCCCCCCCeEEEEEccCCCEEEEE-c----------CCcEEEEECCCCc
Q 004924 539 ADAQLCVWDAVGWKKLCSKFLH--S---FQTGLVPETTIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAPTLN 602 (723)
Q Consensus 539 ~dg~I~vwd~~~~~~~~~~~l~--~---~~~~~~~~~~~v~~l~~spdg~~l~~s-~----------dg~I~vwd~~~~~ 602 (723)
.+|.+++.|..++.......+. . +..+-.+ .....++++|+++.+++. . .++|.++|+.+++
T Consensus 245 ~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k 322 (386)
T 3sjl_D 245 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE 322 (386)
T ss_dssp TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred CCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence 6899999999875321111111 0 0011111 334467889999888874 2 1479999999999
Q ss_pred eeEEecCCCCCCCeEEEEEeeCCc-EEEEEe-CCCcEEEEECCCCcEEEEeec
Q 004924 603 HTSQLVPDKMDLPITYATYSCDGK-CIYVSC-KSGHVKVFDTSTLELRCQINL 653 (723)
Q Consensus 603 ~~~~~~~~~h~~~v~~l~~spdg~-~l~sgs-~dg~I~iwd~~~~~~~~~~~~ 653 (723)
.+..+.. ...+.++++++|++ +|+++. .++.|.++|..+++.+.++..
T Consensus 323 v~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 323 RLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp EEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred EEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence 9999875 34688999999997 677654 489999999999999998864
No 193
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.48 E-value=6.2e-11 Score=132.66 Aligned_cols=270 Identities=14% Similarity=0.070 Sum_probs=188.1
Q ss_pred CCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcE
Q 004924 384 HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKI 460 (723)
Q Consensus 384 pdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I 460 (723)
|.+.++++...+++|.++|..+.+ ++..+. ....+..+.|+ |+++++++ ++.|
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~---------------------v~~~i~---~g~~p~~v~~SpDGr~lyv~~~dg~V 220 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYE---------------------IKTVLD---TGYAVHISRLSASGRYLFVIGRDGKV 220 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCC---------------------EEEEEE---CSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCe---------------------EEEEEe---CCCCccceEECCCCCEEEEEcCCCeE
Confidence 445566777778999998876432 222111 23356689999 88999888 8999
Q ss_pred EEEEcC--CCcEEEEEeCCCCCeEEEEEc----CCC-eEEEE-ECCCcEEEEeCCCCcEEEEEcCc-----------CCc
Q 004924 461 SIFSLE--TFQTLATFANPPPIATYFILL----PQD-LFAFG-FDDSSILVHCPCTKKTKAKLKGH-----------QNR 521 (723)
Q Consensus 461 ~vwd~~--~~~~~~~~~~~~~~v~~l~~~----p~~-~l~sg-s~dg~I~iwd~~~~~~~~~l~~~-----------~~~ 521 (723)
.+||+. +++.+..+.... ....++|+ ||| +++++ ..++.|.++|..+.+.+..+... ...
T Consensus 221 ~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~r 299 (567)
T 1qks_A 221 NMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR 299 (567)
T ss_dssp EEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCC
T ss_pred EEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCc
Confidence 999995 888888876533 45789999 699 55554 45689999999999998876421 126
Q ss_pred EEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E-cCCcEEEEEC
Q 004924 522 ITCLAYSLSLNV-LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEA 598 (723)
Q Consensus 522 i~~l~~spdg~~-l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~dg~I~vwd~ 598 (723)
+..+..++++.. ++....+|.|.++|....... .+..+..+ .....+.|+|+|+++++ + .++.|.++|+
T Consensus 300 va~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~---~v~~i~~~-----~~~~d~~~~pdgr~~~va~~~sn~V~ViD~ 371 (567)
T 1qks_A 300 VAAILASHYRPEFIVNVKETGKILLVDYTDLNNL---KTTEISAE-----RFLHDGGLDGSHRYFITAANARNKLVVIDT 371 (567)
T ss_dssp EEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE---EEEEEECC-----SSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred eEEEEEcCCCCEEEEEecCCCeEEEEecCCCccc---eeeeeecc-----ccccCceECCCCCEEEEEeCCCCeEEEEEC
Confidence 788888988765 444556799999998874321 12223333 45778999999999887 4 6789999999
Q ss_pred CCCceeEEecC-C--CCCCCeEEEEEeeCCcEEE-EEe-CCCcEEEEECCC-------CcEEEEeecccccCCCCccCcc
Q 004924 599 PTLNHTSQLVP-D--KMDLPITYATYSCDGKCIY-VSC-KSGHVKVFDTST-------LELRCQINLTAYAQPGTISLEL 666 (723)
Q Consensus 599 ~~~~~~~~~~~-~--~h~~~v~~l~~spdg~~l~-sgs-~dg~I~iwd~~~-------~~~~~~~~~~~~~~~g~~~~~v 666 (723)
.+++.+..+.. . .|.+.-..+ ++|++..++ ++. .++.|.++|..+ .+.+.++... | .+..
T Consensus 372 ~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~-----g--~g~~ 443 (567)
T 1qks_A 372 KEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL-----G--GGSL 443 (567)
T ss_dssp TTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-----C--SCCC
T ss_pred CCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC-----C--CCCE
Confidence 99998777654 2 232222222 578755554 443 468999999988 6677776532 1 2212
Q ss_pred ceEEEEEecCCCCEEEEEEC-------CCcEEEEecCCC
Q 004924 667 YPLVIAAHPLEPNRIALGLT-------NGRVHVIEPLES 698 (723)
Q Consensus 667 ~~~~v~~sp~d~~~las~s~-------Dg~v~iWd~~~~ 698 (723)
.+..|| +++++.+... .++|.|+|..+.
T Consensus 444 ---~i~~~p-~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 444 ---FIKTHP-NSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp ---CEECCT-TCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred ---EEEeCC-CCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 477899 8888777652 459999999876
No 194
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.48 E-value=1.4e-10 Score=123.27 Aligned_cols=282 Identities=9% Similarity=0.003 Sum_probs=183.3
Q ss_pred cCCCCCEEEEEeC--CC---eEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEE----------CCCc
Q 004924 333 SLPDADSAVCAKS--LE---KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QTAT 397 (723)
Q Consensus 333 ~spdg~~la~~s~--dg---~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s----------~dg~ 397 (723)
..|+++++.++.. .+ +|.+||..+ ++.... ++. ...+ .+++||||++++.+. .++.
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t----~~~~~~-i~~--g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~ 98 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGS----GSILGH-VNG--GFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDY 98 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCC----CeEEEE-ecC--CCCC--CeEECCCCCEEEEEeccccccccCCCCCe
Confidence 4577877777654 33 789999874 333322 332 1222 999999999999886 3577
Q ss_pred EEEEeccCCcccccccceeeeeEEEecC-CCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe---CCcEEEEEcCCCcEE
Q 004924 398 HKLWKWQSNKQSLEEENVNMESQLYQPS-SKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTL 471 (723)
Q Consensus 398 i~iWd~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s---dg~I~vwd~~~~~~~ 471 (723)
|.+||..+... ...+ ... .... .+......++|+ |++|++++ ++.|.++| .+++.+
T Consensus 99 v~viD~~t~~~-----~~~i-----~~~~~~~~-------~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~ 160 (373)
T 2mad_H 99 VEVFDPVTFLP-----IADI-----ELPDAPRF-------DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSD 160 (373)
T ss_pred EEEEECCCCcE-----EEEE-----ECCCcccc-------ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEE
Confidence 88888764222 1111 000 0000 011233478888 88888876 36799999 999988
Q ss_pred EE-EeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEEEEEc-----CcCCcE-EEEEEcCCCCEEEEEeCCCc
Q 004924 472 AT-FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK-----GHQNRI-TCLAYSLSLNVLVSSGADAQ 542 (723)
Q Consensus 472 ~~-~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~~l~-----~~~~~i-~~l~~spdg~~l~s~s~dg~ 542 (723)
.. +.... ++.+.|++ .+++.+.||.+.++|. +++...... ....++ ....+.+++..++..+..+.
T Consensus 161 ~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 235 (373)
T 2mad_H 161 DQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGK 235 (373)
T ss_pred eEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCce
Confidence 77 64322 34556766 6677788999999999 887663322 111221 23456676666555557889
Q ss_pred EEEEeCCCCceeeceeeeee-----ecCCCCCCCCeEEEEEccCCCEEEEE-c----------CCcEEEEECCCCceeEE
Q 004924 543 LCVWDAVGWKKLCSKFLHSF-----QTGLVPETTIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAPTLNHTSQ 606 (723)
Q Consensus 543 I~vwd~~~~~~~~~~~l~~~-----~~~~~~~~~~v~~l~~spdg~~l~~s-~----------dg~I~vwd~~~~~~~~~ 606 (723)
+.+.|+.++.......+... ..+..+ .....+.++|+++.+++. . ++.|.++|..+++.+.+
T Consensus 236 v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p--~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~ 313 (373)
T 2mad_H 236 ILQADISAAGATNKAPIDALSGGRKADTWRP--GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQ 313 (373)
T ss_pred EEEEeccCCcceEeeeeeecCCcccccceec--CceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEE
Confidence 99999976432111111100 000011 334558899999888873 2 25799999999999988
Q ss_pred ecCCCCCCCeEEEEEeeCCc-EEEEEe-CCCcEEEEECCCCcEEEEe
Q 004924 607 LVPDKMDLPITYATYSCDGK-CIYVSC-KSGHVKVFDTSTLELRCQI 651 (723)
Q Consensus 607 ~~~~~h~~~v~~l~~spdg~-~l~sgs-~dg~I~iwd~~~~~~~~~~ 651 (723)
+.. .....+++|+|||+ .++++. .++.|.+||..+++.+..+
T Consensus 314 i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 314 ISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 864 34688999999999 777777 4899999999999988774
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.48 E-value=2.9e-10 Score=116.39 Aligned_cols=269 Identities=7% Similarity=-0.020 Sum_probs=184.4
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccc
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 412 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~ 412 (723)
..|+|+..++...++.|..|+.. +....+.++. +...+.+++++++|...++...++.|..|+... .
T Consensus 22 ~d~~g~l~v~~~~~~~v~~~d~~-----~~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g------~ 88 (299)
T 2z2n_A 22 VSDKGKVWITQHKANMISCINLD-----GKITEYPLPT--PDAKVMCLTISSDGEVWFTENAANKIGRITKKG------I 88 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-----CCEEEEECSS--TTCCEEEEEECTTSCEEEEETTTTEEEEECTTS------C
T ss_pred ECCCCCEEEEecCCCcEEEEcCC-----CCeEEecCCc--ccCceeeEEECCCCCEEEeCCCCCeEEEECCCC------c
Confidence 56888877777668899999875 2344443443 457899999999999777766678888887541 1
Q ss_pred cceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEE-EeCCCCCeEEEEEcC
Q 004924 413 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYFILLP 488 (723)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~-~~~~~~~v~~l~~~p 488 (723)
. ..+.. ......+.++++. |.++++.. ++.|.+||. +++.... .......+..+++.+
T Consensus 89 ~------~~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~ 150 (299)
T 2z2n_A 89 I------KEYTL-----------PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS 150 (299)
T ss_dssp E------EEEEC-----------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT
T ss_pred E------EEEeC-----------CCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC
Confidence 0 11110 0134567889998 65666555 789999998 5554432 223456789999999
Q ss_pred CC-eEEEEECCCcEEEEeCCCCcEEEE-EcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCC
Q 004924 489 QD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 566 (723)
Q Consensus 489 ~~-~l~sgs~dg~I~iwd~~~~~~~~~-l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~ 566 (723)
+| .+++...++.|..||. +++.... +......+..++++++|...++...++.|.+||. ++.... +. .. ..
T Consensus 151 ~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~-~~-~~ 223 (299)
T 2z2n_A 151 DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE---FK-IP-TP 223 (299)
T ss_dssp TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EE-CS-ST
T ss_pred CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE---EE-CC-CC
Confidence 99 6666666789999998 6665543 3334567889999999997777667889999999 543211 11 11 12
Q ss_pred CCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCC
Q 004924 567 VPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 645 (723)
Q Consensus 567 ~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~ 645 (723)
. ..+.+++++++|...++. .++.|..||. +++ +..+....+...+.++++ ++|.+.++.+ .+.+..++..++
T Consensus 224 ~---~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 224 N---ARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp T---CCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred C---CCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 2 578899999999876665 6789999998 454 334432233567899999 8888766655 567777887665
Q ss_pred c
Q 004924 646 E 646 (723)
Q Consensus 646 ~ 646 (723)
+
T Consensus 297 ~ 297 (299)
T 2z2n_A 297 N 297 (299)
T ss_dssp -
T ss_pred c
Confidence 4
No 196
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.48 E-value=7e-12 Score=126.81 Aligned_cols=236 Identities=12% Similarity=0.032 Sum_probs=161.6
Q ss_pred CeEEEEEe--CCEEEEE-e-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEE
Q 004924 441 SISCFALR--GSHLFSA-S-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL 515 (723)
Q Consensus 441 ~V~~v~~s--~~~l~s~-s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l 515 (723)
...+++++ |++++++ . ++.|.+|+..++........+...+.+++++++| .+++.. ++.|.+||..++... .+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-EC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-ee
Confidence 67789998 6655524 4 7899999976554322222333567789999999 555544 889999998765433 33
Q ss_pred c-CcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcE
Q 004924 516 K-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQI 593 (723)
Q Consensus 516 ~-~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I 593 (723)
. .....+..++++++|+.+++...++.|.+|+..+... .. ...... ..+.+++++|+|+.+++. .++.|
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~-----~~-~~~~~~---~~p~~i~~~~~g~l~v~~~~~~~i 173 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-----TV-LPFTGL---NDPDGVAVDNSGNVYVTDTDNNRV 173 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC-----EE-CCCCSC---CSCCCEEECTTCCEEEEEGGGTEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee-----Ee-eccccC---CCceeEEEeCCCCEEEEECCCCEE
Confidence 2 2335789999999999777777788999997655321 11 111111 357789999999866665 57899
Q ss_pred EEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEE
Q 004924 594 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 673 (723)
Q Consensus 594 ~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~ 673 (723)
.+||........... .+...+.+++++++|..+++...++.|.+|+........ ... .+.-.+.++++
T Consensus 174 ~~~~~~~~~~~~~~~--~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~---------~~~~~p~~i~~ 241 (270)
T 1rwi_B 174 VKLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF---------TGLNTPLAVAV 241 (270)
T ss_dssp EEECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC---------CSCSCEEEEEE
T ss_pred EEEecCCCceEeecc--cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc---------CCCCCceeEEE
Confidence 999997665433221 224678899999999877777778999999987654322 111 11122558999
Q ss_pred ecCCCCEEEEEECCCcEEEEecCCCce
Q 004924 674 HPLEPNRIALGLTNGRVHVIEPLESEV 700 (723)
Q Consensus 674 sp~d~~~las~s~Dg~v~iWd~~~~~~ 700 (723)
+| +++++++.+.+++|+++++...+.
T Consensus 242 ~~-~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 242 DS-DRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CT-TCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CC-CCCEEEEECCCCEEEEEcCCCccc
Confidence 99 788888888999999999977653
No 197
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.46 E-value=5.5e-10 Score=114.32 Aligned_cols=282 Identities=8% Similarity=-0.011 Sum_probs=188.0
Q ss_pred eEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeE
Q 004924 364 RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS 443 (723)
Q Consensus 364 ~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 443 (723)
..+.++. ....+.++++.++|+..++...++.|.+|+.. +.. ..+.. ..+...+.
T Consensus 11 ~~~~~~~--~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~-----------~~~~~-----------~~~~~~~~ 65 (300)
T 2qc5_A 11 EEFNLSI--PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI-----------KEFEV-----------PTPDAKVM 65 (300)
T ss_dssp EEEECSS--TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-----------EEEEC-----------SSTTCCEE
T ss_pred EEEecCC--CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce-----------EEEEC-----------CCCCCcce
Confidence 3344554 56788999999999977776678899888854 211 00110 02345688
Q ss_pred EEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEE-EeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEE-EcC
Q 004924 444 CFALR--GSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKG 517 (723)
Q Consensus 444 ~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~-~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~-l~~ 517 (723)
++++. +.+.++.. ++.|..||.. ++.... .......+.++++.++| .+++...++.|..+|.. ++.... +..
T Consensus 66 ~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~ 143 (300)
T 2qc5_A 66 CLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPN 143 (300)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSS
T ss_pred eEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCC
Confidence 89988 66555555 6889999987 655322 22244678899999999 66666667899999987 655432 333
Q ss_pred cCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEE
Q 004924 518 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVY 596 (723)
Q Consensus 518 ~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vw 596 (723)
....+.+++++++|+..++...++.|..||. +++... +. .. ... ..+..++++++|...++. ..+.|.+|
T Consensus 144 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~-~~-~~~---~~~~~i~~d~~g~l~v~~~~~~~i~~~ 214 (300)
T 2qc5_A 144 KGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE---YP-LP-TNA---AAPVGITSGNDGALWFVEIMGNKIGRI 214 (300)
T ss_dssp TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EE-CS-STT---CCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred CCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE---ee-CC-CCC---CCcceEEECCCCCEEEEccCCCEEEEE
Confidence 4567899999999997666666788999998 433211 11 11 122 468899999999877775 56689999
Q ss_pred ECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecC
Q 004924 597 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 676 (723)
Q Consensus 597 d~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~ 676 (723)
|. +++..... ...+...+.+++++++|+..++...++.|..|+. +++.. .+... .+ ... +.+++..+
T Consensus 215 ~~-~g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~----~~--~~~--~~~i~~~~- 281 (300)
T 2qc5_A 215 TT-TGEISEYD-IPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQ----TE--NAE--PHGITFGK- 281 (300)
T ss_dssp CT-TCCEEEEE-CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECC----ST--TCC--CCCEEECT-
T ss_pred cC-CCcEEEEE-CCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECC----cc--CCc--cceeEeCC-
Confidence 98 55544322 2223567899999999997777666799999998 45443 22211 01 222 34888898
Q ss_pred CCCEEEEEECCCcEEEEecC
Q 004924 677 EPNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 677 d~~~las~s~Dg~v~iWd~~ 696 (723)
++.++++.. + .|..+++.
T Consensus 282 ~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 282 DGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp TSCEEEECS-S-EEEEEEEC
T ss_pred CCCEEEEcc-C-ceEEeCCC
Confidence 777666554 4 77777763
No 198
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.45 E-value=7e-12 Score=146.52 Aligned_cols=280 Identities=13% Similarity=0.018 Sum_probs=171.6
Q ss_pred cCCCCCEEEEEeCCCe---EEEEeecccC-CCCceeEE-e---cCCCCCCCceEEEEEeCCCCEEEEEECC-----CcEE
Q 004924 333 SLPDADSAVCAKSLEK---SVNLKLQLIN-EPSECRTL-L---LPDNSFGGRVVRLIYSHSGDFLVALTQT-----ATHK 399 (723)
Q Consensus 333 ~spdg~~la~~s~dg~---v~iw~~~~~~-~~~~~~~~-~---l~~~~h~~~V~~l~fspdg~~las~s~d-----g~i~ 399 (723)
.+|||++++....++. -.+|...... ..+....+ . +. .+|...+..++|||||++||.++.+ ..|+
T Consensus 114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~-~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~ 192 (741)
T 1yr2_A 114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWA-KDGATALDAWAASDDGRLLAYSVQDGGSDWRTVK 192 (741)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC-----EEEEEEEECTTSSEEEEEEEETTCSEEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhc-cCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE
Confidence 4589999998876654 5777765310 01222222 0 11 1244578899999999999988764 3588
Q ss_pred EEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-CC--------------cEEEE
Q 004924 400 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GG--------------KISIF 463 (723)
Q Consensus 400 iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-dg--------------~I~vw 463 (723)
+||+.++.. +.... +...+..++|+ ++.|+.++ ++ .|.+|
T Consensus 193 v~dl~tg~~---------------------~~~~~---~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~ 248 (741)
T 1yr2_A 193 FVGVADGKP---------------------LADEL---KWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLH 248 (741)
T ss_dssp EEETTTCCE---------------------EEEEE---EEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEE
T ss_pred EEECCCCCC---------------------CCccC---CCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEE
Confidence 888764332 11000 11112356777 65666665 43 38899
Q ss_pred EcCCCcE--EEEEeC--CCCCeEEEEEcCCC-eEEEEECCC-----cEEEEeCCCC--cEEEEEcCcCCcEEEEEEcCCC
Q 004924 464 SLETFQT--LATFAN--PPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTK--KTKAKLKGHQNRITCLAYSLSL 531 (723)
Q Consensus 464 d~~~~~~--~~~~~~--~~~~v~~l~~~p~~-~l~sgs~dg-----~I~iwd~~~~--~~~~~l~~~~~~i~~l~~spdg 531 (723)
++.++.. ...+.. +...+..+.|+||| .|+..+.++ .|++||+.++ ++...+..+...+... ++|+|
T Consensus 249 ~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg 327 (741)
T 1yr2_A 249 RLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVG 327 (741)
T ss_dssp ETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEET
T ss_pred ECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccC
Confidence 9987652 233333 23358899999999 777666443 8999999877 4144555555455554 34889
Q ss_pred CEEEEEeCC----CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECC-CCceeE
Q 004924 532 NVLVSSGAD----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP-TLNHTS 605 (723)
Q Consensus 532 ~~l~s~s~d----g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~-~~~~~~ 605 (723)
+.|+..+.+ +.|.+||+.++. .....+..++. ..+.+++++ ++..+++ ..++..+||.+. +++...
T Consensus 328 ~~l~~~s~~~~~~~~l~~~d~~~~~----~~~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~ 399 (741)
T 1yr2_A 328 DQLWFVSGDGAPLKKIVRVDLSGST----PRFDTVVPESK---DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAG 399 (741)
T ss_dssp TEEEEEECTTCTTCEEEEEECSSSS----CEEEEEECCCS---SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEE
T ss_pred CEEEEEECCCCCCCEEEEEeCCCCc----cccEEEecCCC---CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCcee
Confidence 988887764 459999988742 01122333332 456677887 4445555 477765555443 455555
Q ss_pred EecCCCCCCCeEEEEEeeCCcEEEEE----eCCCcEEEEECCCCcE
Q 004924 606 QLVPDKMDLPITYATYSCDGKCIYVS----CKSGHVKVFDTSTLEL 647 (723)
Q Consensus 606 ~~~~~~h~~~v~~l~~spdg~~l~sg----s~dg~I~iwd~~~~~~ 647 (723)
.+..+ +...+..++++|+++.++.. ...+.|++||+.+++.
T Consensus 400 ~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 400 AVSLP-GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp ECBCS-SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred eccCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 55432 25678889999998866632 2348899999998873
No 199
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.45 E-value=1.5e-11 Score=124.38 Aligned_cols=235 Identities=9% Similarity=0.000 Sum_probs=162.2
Q ss_pred ceEEEEEeCCCCEEE-EEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEE
Q 004924 376 RVVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 452 (723)
Q Consensus 376 ~V~~l~fspdg~~la-s~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l 452 (723)
...+++++++|+.++ +.+.++.|.+|+..+... ..+. ..+...+.+++++ |+ +
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-----------~~~~------------~~~~~~p~~i~~~~~g~-l 80 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-----------TVLP------------FNGLYQPQGLAVDGAGT-V 80 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC----------------EECC------------CCSCCSCCCEEECTTCC-E
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc-----------ceEe------------eCCcCCcceeEECCCCC-E
Confidence 788999999999666 446778999988543211 0000 0233456788888 55 4
Q ss_pred EEEe-CCcEEEEEcCCCcEEEEEe-CCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcC
Q 004924 453 FSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL 529 (723)
Q Consensus 453 ~s~s-dg~I~vwd~~~~~~~~~~~-~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~sp 529 (723)
+.+. ++.|.+||...... ..+. .....+..++++++| .+++...++.|.+|+..+.............+.++++++
T Consensus 81 ~v~~~~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~ 159 (270)
T 1rwi_B 81 YVTDFNNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN 159 (270)
T ss_dssp EEEETTTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT
T ss_pred EEEcCCCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC
Confidence 4444 88999999876543 3333 333578899999999 777767788999998665544332222334678899999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEec
Q 004924 530 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLV 608 (723)
Q Consensus 530 dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~ 608 (723)
+|+.+++...++.|.+||..++... . ...... ..+..++++++|..+++. .++.|.+||....... ...
T Consensus 160 ~g~l~v~~~~~~~i~~~~~~~~~~~-----~-~~~~~~---~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~-~~~ 229 (270)
T 1rwi_B 160 SGNVYVTDTDNNRVVKLEAESNNQV-----V-LPFTDI---TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLP 229 (270)
T ss_dssp TCCEEEEEGGGTEEEEECTTTCCEE-----E-CCCSSC---CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE-ECC
T ss_pred CCCEEEEECCCCEEEEEecCCCceE-----e-ecccCC---CCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce-eec
Confidence 9997777777889999998874321 1 111221 468899999999766665 5789999998654432 222
Q ss_pred CCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCc
Q 004924 609 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 646 (723)
Q Consensus 609 ~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~ 646 (723)
. .+...+.+++++++|+.+++...++.|++++....+
T Consensus 230 ~-~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 230 F-TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp C-CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred c-CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 1 224678999999999988888889999999987654
No 200
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.44 E-value=5.5e-12 Score=128.45 Aligned_cols=194 Identities=10% Similarity=-0.017 Sum_probs=151.9
Q ss_pred CCCeEEEEECCCcEEEEeCCCCcEEEEEcCcC-CcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCC
Q 004924 488 PQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 566 (723)
Q Consensus 488 p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~~-~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~ 566 (723)
|+..|++++.++.|.+||..+|+.+..+..+. ..+.++.++|+|+.++ +.++.|..||. +|+.+. ++..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W-----~~~~~~ 75 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELW-----NIAAPA 75 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEE-----EEECCT
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEE-----EEcCCC
Confidence 33388999999999999998999999998765 4788999999999888 45788999999 654332 222222
Q ss_pred CCCCCCeEEEEEccCCCEEEE-Ec-CCcEEEEECCCCceeEEecCCC----CCCCeEEEEEeeCCcEEEEEeCCCcEEEE
Q 004924 567 VPETTIVNHIQFHPDQIHLLS-IH-EGQIDVYEAPTLNHTSQLVPDK----MDLPITYATYSCDGKCIYVSCKSGHVKVF 640 (723)
Q Consensus 567 ~~~~~~v~~l~~spdg~~l~~-s~-dg~I~vwd~~~~~~~~~~~~~~----h~~~v~~l~~spdg~~l~sgs~dg~I~iw 640 (723)
. ..+.++.+.|+|+++++ +. ++.|..+|. +|+.+..+.... +......+++.++|+++++.+.++.|..|
T Consensus 76 ~---~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~ 151 (276)
T 3no2_A 76 G---CEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREI 151 (276)
T ss_dssp T---CEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEE
T ss_pred C---ccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEE
Confidence 2 46888999999999998 45 677888886 788777664311 11234556788999999999999999999
Q ss_pred ECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCceeeecCC
Q 004924 641 DTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLP 706 (723)
Q Consensus 641 d~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~w~~~~ 706 (723)
|.. |+.+..+... ...+ ++...+ +++++++++.++.|..+|+.+|+..|....
T Consensus 152 d~~-G~~~w~~~~~---------~~~~--~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~ 204 (276)
T 3no2_A 152 APN-GQLLNSVKLS---------GTPF--SSAFLD-NGDCLVACGDAHCFVQLNLESNRIVRRVNA 204 (276)
T ss_dssp CTT-SCEEEEEECS---------SCCC--EEEECT-TSCEEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred CCC-CCEEEEEECC---------CCcc--ceeEcC-CCCEEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence 998 9999888642 1233 677788 889999998888999999999999999853
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.43 E-value=4.6e-10 Score=119.31 Aligned_cols=238 Identities=12% Similarity=0.070 Sum_probs=160.3
Q ss_pred EEEEe--CCEEEEEe-----------CCcEEEEEcCCCcEEEEEeCC-------CCCeEEEEEcCCC-eEEEEEC--CCc
Q 004924 444 CFALR--GSHLFSAS-----------GGKISIFSLETFQTLATFANP-------PPIATYFILLPQD-LFAFGFD--DSS 500 (723)
Q Consensus 444 ~v~~s--~~~l~s~s-----------dg~I~vwd~~~~~~~~~~~~~-------~~~v~~l~~~p~~-~l~sgs~--dg~ 500 (723)
.++++ |++++++. ++.|.+||..+++.+..+... ......+.|+||| ++++++. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 78888 77877764 467999999998888877532 1234578999999 8887764 578
Q ss_pred EEEEeCCCCcEEEE-EcCcCCcEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCC-eEEEE
Q 004924 501 ILVHCPCTKKTKAK-LKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI-VNHIQ 577 (723)
Q Consensus 501 I~iwd~~~~~~~~~-l~~~~~~i~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~-v~~l~ 577 (723)
|.++| .+++.+.. +... . ++.+.|++ +.+++.+.||.+.++|. +++............+. .+ .....
T Consensus 150 v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~----~p~~~~~~ 219 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAA----QNLLTQPA 219 (373)
T ss_pred EEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCC----cceeecce
Confidence 99999 99998877 5422 2 24455655 45667778999999999 76443211100011111 12 23355
Q ss_pred EccCCCEE-EEEcCCcEEEEECCCCc--eeEEecCCC--------CCCCeEEEEEeeCCcEEEEEeC----------CCc
Q 004924 578 FHPDQIHL-LSIHEGQIDVYEAPTLN--HTSQLVPDK--------MDLPITYATYSCDGKCIYVSCK----------SGH 636 (723)
Q Consensus 578 ~spdg~~l-~~s~dg~I~vwd~~~~~--~~~~~~~~~--------h~~~v~~l~~spdg~~l~sgs~----------dg~ 636 (723)
+.+++..+ +++.++.+.+.|+.++. .+..+.... .......++++||++.++++.. ++.
T Consensus 220 ~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~ 299 (373)
T 2mad_H 220 QANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE 299 (373)
T ss_pred eEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence 66766544 44677899999997553 222221100 0122344788999998887654 357
Q ss_pred EEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCC-EEEEEE-CCCcEEEEecCCCceeee
Q 004924 637 VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGL-TNGRVHVIEPLESEVEWG 703 (723)
Q Consensus 637 I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~-~las~s-~Dg~v~iWd~~~~~~~w~ 703 (723)
|.++|..+++.+..+.. ....+ +++|+| |++ .++++. .++.|.|||..+++..-.
T Consensus 300 V~VID~~t~~vv~~i~~---------g~~p~--~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 300 VTSVTGLVGQTSSQISL---------GHDVD--AISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEEECCCCEEEEEEEC---------CCCcC--eEEECC-CCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 99999999999888853 22233 899999 888 677776 589999999999876533
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.42 E-value=1.3e-10 Score=120.27 Aligned_cols=235 Identities=12% Similarity=0.069 Sum_probs=160.8
Q ss_pred CCCCeEEEEEe--CCEEEE-------Ee-CCcEEEEEcCCCcEEEEEe----CCCCCeEEEEEcCC-CeEEEEECCCcEE
Q 004924 438 PKDSISCFALR--GSHLFS-------AS-GGKISIFSLETFQTLATFA----NPPPIATYFILLPQ-DLFAFGFDDSSIL 502 (723)
Q Consensus 438 h~~~V~~v~~s--~~~l~s-------~s-dg~I~vwd~~~~~~~~~~~----~~~~~v~~l~~~p~-~~l~sgs~dg~I~ 502 (723)
.-....+++|+ +..+++ +. ++.|.+||..+++...... ++...+.+++++++ +.+..++.++.|.
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~ 95 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL 95 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEE
Confidence 34456789998 666666 34 8999999988877643322 14467889999999 6555555555899
Q ss_pred EEeCCCCcEEEE-EcC----cCCcEEEEEEcCCCCEEEEEeCC---------------CcEEEEeCCCCceeeceeeeee
Q 004924 503 VHCPCTKKTKAK-LKG----HQNRITCLAYSLSLNVLVSSGAD---------------AQLCVWDAVGWKKLCSKFLHSF 562 (723)
Q Consensus 503 iwd~~~~~~~~~-l~~----~~~~i~~l~~spdg~~l~s~s~d---------------g~I~vwd~~~~~~~~~~~l~~~ 562 (723)
+||.. ++.... ... ....+.+++++++|+..++...+ +.|..||.. ++.. . +
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-----~-~ 167 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI-----Q-V 167 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE-----E-E
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE-----E-e
Confidence 99988 765433 221 12457899999999887776655 567777765 3221 1 1
Q ss_pred ecCCCCCCCCeEEEEEc----cCCCEEEEE--cCCcEEEEECC-CCce-----eEEecCCCCC-CCeEEEEEeeCCcEEE
Q 004924 563 QTGLVPETTIVNHIQFH----PDQIHLLSI--HEGQIDVYEAP-TLNH-----TSQLVPDKMD-LPITYATYSCDGKCIY 629 (723)
Q Consensus 563 ~~~~~~~~~~v~~l~~s----pdg~~l~~s--~dg~I~vwd~~-~~~~-----~~~~~~~~h~-~~v~~l~~spdg~~l~ 629 (723)
.... .....++++ |+++.++++ .++.|.+||.. +++. ...+. .+. ..+..++++++|++++
T Consensus 168 ~~~~----~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v 241 (314)
T 1pjx_A 168 DTAF----QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP--GTHEGGADGMDFDEDNNLLV 241 (314)
T ss_dssp EEEE----SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC--CCSSCEEEEEEEBTTCCEEE
T ss_pred ccCC----CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC--CCCCCCCCceEECCCCCEEE
Confidence 1111 356789999 999766653 57899999986 4442 12221 122 5678899999999888
Q ss_pred EEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEE-EEEECCCcEEEEecCC
Q 004924 630 VSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI-ALGLTNGRVHVIEPLE 697 (723)
Q Consensus 630 sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~l-as~s~Dg~v~iWd~~~ 697 (723)
+...++.|.+||..+++....+..+ .. .+.+++++| +++.| ++...++.|..|++..
T Consensus 242 ~~~~~~~i~~~d~~~g~~~~~~~~~--------~~--~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 242 ANWGSSHIEVFGPDGGQPKMRIRCP--------FE--KPSNLHFKP-QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEETTTEEEEECTTCBSCSEEEECS--------SS--CEEEEEECT-TSSEEEEEETTTTEEEEEECSS
T ss_pred EEcCCCEEEEEcCCCCcEeEEEeCC--------CC--CceeEEECC-CCCEEEEEeCCCCeEEEEeCCC
Confidence 8888899999999878766655421 12 245899999 78844 5555678999999875
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.41 E-value=8e-11 Score=123.87 Aligned_cols=280 Identities=12% Similarity=0.000 Sum_probs=183.8
Q ss_pred EEEeCCCCEEEEEEC-----CCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEE
Q 004924 380 LIYSHSGDFLVALTQ-----TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 452 (723)
Q Consensus 380 l~fspdg~~las~s~-----dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l 452 (723)
....|+++.++.... ++.|.+.|.. +++++..... ...+ . ++++ |+++
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~---------------------t~~v~~~I~v--G~~P-~-va~spDG~~l 92 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGE---------------------AGRVIGMIDG--GFLP-N-PVVADDGSFI 92 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETT---------------------TTEEEEEEEE--CSSC-E-EEECTTSSCE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECC---------------------CCeEEEEEEC--CCCC-c-EEECCCCCEE
Confidence 445689988887765 4677776655 3333332221 1223 3 8888 7766
Q ss_pred EEEe-----------CCcEEEEEcCCCcEEEEEeCCC-------CCeEEEEEcCCC-eEEEEEC--CCcEEEEeCCCCcE
Q 004924 453 FSAS-----------GGKISIFSLETFQTLATFANPP-------PIATYFILLPQD-LFAFGFD--DSSILVHCPCTKKT 511 (723)
Q Consensus 453 ~s~s-----------dg~I~vwd~~~~~~~~~~~~~~-------~~v~~l~~~p~~-~l~sgs~--dg~I~iwd~~~~~~ 511 (723)
++++ ++.|.+||..+++.+.++.-.. .....+.++||| +++++.. ++.|.++|+.+++.
T Consensus 93 yVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 93 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 172 (386)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred EEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE
Confidence 6553 4689999999999988875321 234578999999 7777764 68999999999999
Q ss_pred EEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceeeceeeeeeecCCCCCCCCe-EEEEE-ccCCCEEEEE
Q 004924 512 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIV-NHIQF-HPDQIHLLSI 588 (723)
Q Consensus 512 ~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~-~~~~~~~~l~~~~~~~~~~~~~v-~~l~~-spdg~~l~~s 588 (723)
+..+.... . ...+....+.+++.+.||.+.+.++.+ +....... . ...... ..+ ....| .++|++++++
T Consensus 173 v~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~-~-~~~~~~---~~~~~~~~~~~~dG~~~~vs 244 (386)
T 3sjl_D 173 KRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT-E-VFHPED---EFLINHPAYSQKAGRLVWPT 244 (386)
T ss_dssp EEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC-C-CCSCTT---SCBCSCCEEETTTTEEEEEB
T ss_pred EEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec-c-eecccc---ccccccceeEcCCCcEEEEe
Confidence 98885322 1 222333446777888899998888876 43321110 1 111100 122 12456 4788777778
Q ss_pred cCCcEEEEECCCCc--eeEEec--------CCCCCCCeEEEEEeeCCcEEEEEeC----------CCcEEEEECCCCcEE
Q 004924 589 HEGQIDVYEAPTLN--HTSQLV--------PDKMDLPITYATYSCDGKCIYVSCK----------SGHVKVFDTSTLELR 648 (723)
Q Consensus 589 ~dg~I~vwd~~~~~--~~~~~~--------~~~h~~~v~~l~~spdg~~l~sgs~----------dg~I~iwd~~~~~~~ 648 (723)
.+|.+++.|+.++. ....+. ..-.......++++++++.++.... .+.|.+.|..+++.+
T Consensus 245 ~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~ 324 (386)
T 3sjl_D 245 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL 324 (386)
T ss_dssp TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE
Confidence 88999999997654 222221 0000112234777999998887653 257999999999999
Q ss_pred EEeecccccCCCCccCccceEEEEEecCCCC-EEEEE-ECCCcEEEEecCCCceeeec
Q 004924 649 CQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALG-LTNGRVHVIEPLESEVEWGK 704 (723)
Q Consensus 649 ~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~-~las~-s~Dg~v~iWd~~~~~~~w~~ 704 (723)
.++.. ....+ .++++| |++ +|.++ ..++.|.|+|..+++..-..
T Consensus 325 ~~i~v---------g~~~~--~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k~~~~i 370 (386)
T 3sjl_D 325 AKFEM---------GHEID--SINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSV 370 (386)
T ss_dssp EEEEE---------EEEEC--EEEECS-SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEC---------CCCcc--eEEECC-CCCeEEEEEcCCCCeEEEEECCCCcEEEEe
Confidence 98874 23445 899999 775 66554 45899999999998865444
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.39 E-value=5.1e-11 Score=139.17 Aligned_cols=285 Identities=11% Similarity=0.047 Sum_probs=172.1
Q ss_pred eCCCCEEEEEECCCc---EEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-
Q 004924 383 SHSGDFLVALTQTAT---HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS- 456 (723)
Q Consensus 383 spdg~~las~s~dg~---i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s- 456 (723)
+|+|++++....++. -.+|....... .+... ..+.|++. +..+|...+..++|| |++|+.+.
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~----~~lld~~~-------l~~~~~~~~~~~~~SPDG~~la~~~~ 182 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAP-VGTKG----RVLLDPNT-------WAKDGATALDAWAASDDGRLLAYSVQ 182 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSC-TTCCC----EEEECGGG-------CC----EEEEEEEECTTSSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCcc-CCCCC----EEEECHHH-------hccCCCEEEEeEEECCCCCEEEEEEc
Confidence 489999888776543 56666442100 00000 11222211 011344567889999 88888776
Q ss_pred -CC----cEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCC--------------cEEEEeCCCCcE--EEEE
Q 004924 457 -GG----KISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDS--------------SILVHCPCTKKT--KAKL 515 (723)
Q Consensus 457 -dg----~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg--------------~I~iwd~~~~~~--~~~l 515 (723)
+| +|++||+.+++.+.... +...+..++|+||..|+.++.++ .|++|++.++.. ...+
T Consensus 183 ~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~ 261 (741)
T 1yr2_A 183 DGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVF 261 (741)
T ss_dssp ETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEE
T ss_pred CCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEe
Confidence 23 59999999998765421 11112468899987444444443 389999987652 2333
Q ss_pred cC--cCCcEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-
Q 004924 516 KG--HQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS- 587 (723)
Q Consensus 516 ~~--~~~~i~~l~~spdg~~l~s~s~dg-----~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~- 587 (723)
.. +...+..+.|+|||++|+..+.++ .|++||+.++... ....+.... ..+... ++|+|+.|+.
T Consensus 262 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~---~~~~l~~~~----~~~~~~-~~~dg~~l~~~ 333 (741)
T 1yr2_A 262 ATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG---PVTALIPDL----KAQWDF-VDGVGDQLWFV 333 (741)
T ss_dssp CCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEEC---CCEEEECSS----SSCEEE-EEEETTEEEEE
T ss_pred ccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCc---ccEEecCCC----CceEEE-EeccCCEEEEE
Confidence 33 334688999999999988877554 7999999875211 022232222 234444 3588988886
Q ss_pred Ec----CCcEEEEECCCC-ceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECC-CCcEEEEeecccccCCCC
Q 004924 588 IH----EGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS-TLELRCQINLTAYAQPGT 661 (723)
Q Consensus 588 s~----dg~I~vwd~~~~-~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~-~~~~~~~~~~~~~~~~g~ 661 (723)
+. ++.|.+||+.++ .....+.. .+...+..++|+ ++.++++...|+..+||.+. ++.....+..+
T Consensus 334 s~~~~~~~~l~~~d~~~~~~~~~~l~~-~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~------- 404 (741)
T 1yr2_A 334 SGDGAPLKKIVRVDLSGSTPRFDTVVP-ESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLP------- 404 (741)
T ss_dssp ECTTCTTCEEEEEECSSSSCEEEEEEC-CCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCS-------
T ss_pred ECCCCCCCEEEEEeCCCCccccEEEec-CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCC-------
Confidence 43 346999999875 23334433 234456677887 66778888889887777554 45555554321
Q ss_pred ccCccceEEEEEecCCCCEEE-EEE---CCCcEEEEecCCCce
Q 004924 662 ISLELYPLVIAAHPLEPNRIA-LGL---TNGRVHVIEPLESEV 700 (723)
Q Consensus 662 ~~~~v~~~~v~~sp~d~~~la-s~s---~Dg~v~iWd~~~~~~ 700 (723)
.... +..++++| +++.++ +.+ ..++|++||+.+++.
T Consensus 405 ~~~~--v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 405 GIGS--ASGLSGRP-GDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp SSCE--EEEEECCB-TCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CCeE--EEEeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 1222 44889999 666444 333 347999999988764
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.35 E-value=3.2e-09 Score=108.53 Aligned_cols=266 Identities=12% Similarity=0.056 Sum_probs=180.0
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccc
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 412 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~ 412 (723)
..++|+..++...++.|.+|+.. +....+.++. +...+.++++.++|...++...++.|..||.. +..
T Consensus 27 ~d~~g~l~v~~~~~~~v~~~~~~-----~~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~---- 94 (300)
T 2qc5_A 27 SSEDGKVWFTQHKANKISSLDQS-----GRIKEFEVPT--PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF---- 94 (300)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-----SCEEEEECSS--TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE----
T ss_pred ECCCCCEEEEcCCCCeEEEECCC-----CceEEEECCC--CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe----
Confidence 56788888877778999999865 2334444443 45789999999999977766667888888754 111
Q ss_pred cceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEE-EeCCCCCeEEEEEcC
Q 004924 413 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYFILLP 488 (723)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~-~~~~~~~v~~l~~~p 488 (723)
..+. . ......+.++++. |.++++.. ++.|..+|.. ++.... +......+.++++.+
T Consensus 95 -------~~~~----------~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~ 155 (300)
T 2qc5_A 95 -------TEYP----------L-PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGS 155 (300)
T ss_dssp -------EEEE----------C-SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT
T ss_pred -------EEec----------C-CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECC
Confidence 0011 0 0133567889988 66666655 7889999987 655432 233456788999999
Q ss_pred CC-eEEEEECCCcEEEEeCCCCcEEEE-EcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCC
Q 004924 489 QD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 566 (723)
Q Consensus 489 ~~-~l~sgs~dg~I~iwd~~~~~~~~~-l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~ 566 (723)
++ .+++...++.|..+|. +++.... ...+...+..++++++|...++....+.|.+||. ++.... .. ... .
T Consensus 156 ~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~-~~~-~ 228 (300)
T 2qc5_A 156 DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE---YD-IPT-P 228 (300)
T ss_dssp TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EE-CSS-T
T ss_pred CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE---EE-CCC-C
Confidence 99 6666656788999998 5655432 2234457889999999987777666778999998 332211 11 111 2
Q ss_pred CCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECC
Q 004924 567 VPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 643 (723)
Q Consensus 567 ~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~ 643 (723)
. ..+.+++++++|...++. .++.|..||. +++.. .+........+.+++++++|.+.++.. + .|..++..
T Consensus 229 ~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 229 N---ARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp T---CCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred C---CCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 2 568899999999866665 5689999998 45443 332222345688899999998666554 4 67666643
No 206
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.34 E-value=5.2e-10 Score=115.57 Aligned_cols=244 Identities=11% Similarity=-0.007 Sum_probs=162.1
Q ss_pred CCceEEEEEeCCCCEEEE-------EECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEE
Q 004924 374 GGRVVRLIYSHSGDFLVA-------LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 446 (723)
Q Consensus 374 ~~~V~~l~fspdg~~las-------~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 446 (723)
-....+++|+++|..+++ ++.++.|.+|+..++.. ..+.. .. ..++...+.+++
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~-----------~~~~~--~~------~~~~~~~~~~i~ 77 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK-----------TVICK--PE------VNGYGGIPAGCQ 77 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE-----------EEEEC--CE------ETTEECCEEEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE-----------EEEEe--cc------cCCCCCCCceEE
Confidence 446689999999987777 56788899988653221 00110 00 002445688999
Q ss_pred Ee-C-CEEEEEe-CCcEEEEEcCCCcEEEE-EeC----CCCCeEEEEEcCCC-eEEEEECC---------------CcEE
Q 004924 447 LR-G-SHLFSAS-GGKISIFSLETFQTLAT-FAN----PPPIATYFILLPQD-LFAFGFDD---------------SSIL 502 (723)
Q Consensus 447 ~s-~-~~l~s~s-dg~I~vwd~~~~~~~~~-~~~----~~~~v~~l~~~p~~-~l~sgs~d---------------g~I~ 502 (723)
++ . ..+..++ ++.|.+||.. ++.... ... ....+.+++++++| .+++...+ +.|.
T Consensus 78 ~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~ 156 (314)
T 1pjx_A 78 CDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIY 156 (314)
T ss_dssp ECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEE
T ss_pred EecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEE
Confidence 98 5 6766666 6689999998 765433 221 12347899999999 55555444 5788
Q ss_pred EEeCCCCcEEEEEcCcCCcEEEEEEc----CCCCEEEEE-eCCCcEEEEeCC-CCceeeceeeeeeecCCCCCCCCeEEE
Q 004924 503 VHCPCTKKTKAKLKGHQNRITCLAYS----LSLNVLVSS-GADAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNHI 576 (723)
Q Consensus 503 iwd~~~~~~~~~l~~~~~~i~~l~~s----pdg~~l~s~-s~dg~I~vwd~~-~~~~~~~~~l~~~~~~~~~~~~~v~~l 576 (723)
.||.. ++..... .+......++|+ |+++.++.+ ..++.|.+||.. ++..........+..... ..+..+
T Consensus 157 ~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~---~~p~~i 231 (314)
T 1pjx_A 157 CFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE---GGADGM 231 (314)
T ss_dssp EECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS---CEEEEE
T ss_pred EECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC---CCCCce
Confidence 88876 6554333 233456889999 999766555 567899999986 343211112221221110 247789
Q ss_pred EEccCCCEEEEE-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEE-eCCCcEEEEECCC
Q 004924 577 QFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTST 644 (723)
Q Consensus 577 ~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sg-s~dg~I~iwd~~~ 644 (723)
+++++|.++++. .++.|.+||..+++....+.. +...+.+++|+|+|+.|+++ ..++.|..|+...
T Consensus 232 ~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 232 DFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeC--CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999999888774 778999999987777666643 25779999999999966554 4568899999875
No 207
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.32 E-value=1.9e-10 Score=123.24 Aligned_cols=279 Identities=13% Similarity=0.074 Sum_probs=183.6
Q ss_pred CCCCCEEEEEeCC-----CeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEE----------CCCcE
Q 004924 334 LPDADSAVCAKSL-----EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QTATH 398 (723)
Q Consensus 334 spdg~~la~~s~d-----g~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s----------~dg~i 398 (723)
.|+++.++++... +.|.++|..+ ......+... ..+ .+++||||++++.+. .++.|
T Consensus 81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t---~~vv~~I~vG----~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~V 151 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAITQQFVIDGST---GRILGMTDGG----FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYV 151 (426)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTT---TEEEEEEEEC----SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCCEEEEECCCcCCCCCeEEEEECCC---CEEEEEEECC----CCC--ceEECCCCCEEEEEeccccccccCCCCCEE
Confidence 3567766666553 6899999875 2233333321 233 899999999888876 35678
Q ss_pred EEEeccCCcccccccceeeeeEEEecCCCeeeeeccCC--C---CCCCeEEEEEe--CCEEEEEe---CCcEEEEEcCCC
Q 004924 399 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA--D---PKDSISCFALR--GSHLFSAS---GGKISIFSLETF 468 (723)
Q Consensus 399 ~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~---h~~~V~~v~~s--~~~l~s~s---dg~I~vwd~~~~ 468 (723)
.++|..+.+ .+..+... . .......+.++ |++++++. ++.|.+.|+.++
T Consensus 152 sviD~~t~~---------------------vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~ 210 (426)
T 3c75_H 152 EVFDPVTFL---------------------PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK 210 (426)
T ss_dssp EEECTTTCC---------------------EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred EEEECCCCc---------------------EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC
Confidence 887766432 22111100 0 01223467888 88888876 378999999999
Q ss_pred cEEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEEEE----EcCcCCcE-EEEEEcCCCCEEEEEeCCC
Q 004924 469 QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAK----LKGHQNRI-TCLAYSLSLNVLVSSGADA 541 (723)
Q Consensus 469 ~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~~----l~~~~~~i-~~l~~spdg~~l~s~s~dg 541 (723)
+.+.++.-.. +....|++ .+++.+.||.+.+.+..+++.... +.....++ ..+.+.+++..++..+..+
T Consensus 211 kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g 286 (426)
T 3c75_H 211 TFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTG 286 (426)
T ss_dssp EEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTS
T ss_pred eEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCC
Confidence 9998887432 13344555 666777888888888866655432 11111121 2356789998888888889
Q ss_pred cEEEEeCCCCceeeceeeee-----eecCCCCCCCCeEEEEEccCCCEEEEE-c----------CCcEEEEECCCCceeE
Q 004924 542 QLCVWDAVGWKKLCSKFLHS-----FQTGLVPETTIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAPTLNHTS 605 (723)
Q Consensus 542 ~I~vwd~~~~~~~~~~~l~~-----~~~~~~~~~~~v~~l~~spdg~~l~~s-~----------dg~I~vwd~~~~~~~~ 605 (723)
.+.+.|..++.......... +..+..+ .....++++|+++.+++. . ++.|.++|..+++.+.
T Consensus 287 ~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p--~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~ 364 (426)
T 3c75_H 287 KIFQADLTAEGATFRAPIEALTEAERADDWRP--GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERIN 364 (426)
T ss_dssp EEEEEEECSSCEEECCCEESSCTTTGGGTEEE--CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE
T ss_pred cEEEEeccCCceEEeeeeeecccccccccccc--CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEE
Confidence 99999997643211111110 0000000 222347899999887764 2 2479999999999999
Q ss_pred EecCCCCCCCeEEEEEeeCCc-EEEEEe-CCCcEEEEECCCCcEEEEe
Q 004924 606 QLVPDKMDLPITYATYSCDGK-CIYVSC-KSGHVKVFDTSTLELRCQI 651 (723)
Q Consensus 606 ~~~~~~h~~~v~~l~~spdg~-~l~sgs-~dg~I~iwd~~~~~~~~~~ 651 (723)
++.. ......++|+|||+ +++++. .++.|.++|..+++.+.++
T Consensus 365 ~I~v---g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 365 KIEL---GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEC---CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 9865 33578999999999 888888 5899999999999999887
No 208
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.31 E-value=4e-10 Score=119.02 Aligned_cols=170 Identities=11% Similarity=0.030 Sum_probs=129.8
Q ss_pred CCeEEEEEe--CCEEEEEeCCcEEEEEcCCCc-----------EEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEe
Q 004924 440 DSISCFALR--GSHLFSASGGKISIFSLETFQ-----------TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC 505 (723)
Q Consensus 440 ~~V~~v~~s--~~~l~s~sdg~I~vwd~~~~~-----------~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd 505 (723)
..++.++++ .+++++|+...+++|+++..+ ..... .+.. |+.++| ++ .|+++ .++.|++||
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 368889999 788888885577779875433 11222 3455 999999 77 88888 889999999
Q ss_pred CCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEE
Q 004924 506 PCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 585 (723)
Q Consensus 506 ~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l 585 (723)
+.+.........|...+.++.+.+. .+++++.||.|.+||++++... .+. ..|++++|||+| ..
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~---~~~----------~~Vs~v~WSpkG-~~ 176 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK---QLA----------QNVTSFDVTNSQ-LA 176 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE---EEE----------ESEEEEEECSSE-EE
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc---ccc----------CCceEEEEcCCc-eE
Confidence 9887666666677888988887764 3888999999999999975431 111 579999999999 44
Q ss_pred EEEcCCcEEEEECCCCce--eEEecC-------CCCCCCeEEEEEeeCCcEEEE
Q 004924 586 LSIHEGQIDVYEAPTLNH--TSQLVP-------DKMDLPITYATYSCDGKCIYV 630 (723)
Q Consensus 586 ~~s~dg~I~vwd~~~~~~--~~~~~~-------~~h~~~v~~l~~spdg~~l~s 630 (723)
++..||.+++|+...++. ..++.. .+|...|.+++|.+++.++++
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 446999999999877765 455521 125788999999999999986
No 209
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.28 E-value=2.7e-09 Score=109.76 Aligned_cols=226 Identities=12% Similarity=0.077 Sum_probs=147.9
Q ss_pred CCceEEEEEeCCCCEE-EEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004924 374 GGRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 450 (723)
Q Consensus 374 ~~~V~~l~fspdg~~l-as~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 450 (723)
..-..+..|+|++..| ++...++.|..|+..++.. ..| .....+.+++++ |+
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-----------~~~--------------~~~~~~~~i~~~~dG~ 66 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-----------QRV--------------TMDAPVSSVALRQSGG 66 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-----------EEE--------------ECSSCEEEEEEBTTSS
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-----------EEE--------------eCCCceEEEEECCCCC
Confidence 3445688999965544 4444578888888653211 111 134578899999 66
Q ss_pred EEEEEeCCcEEEEEcCCCcEEEEEeC----CCCCeEEEEEcCCC-eEEEEEC-----------CCcEEEEeCCCCcEEEE
Q 004924 451 HLFSASGGKISIFSLETFQTLATFAN----PPPIATYFILLPQD-LFAFGFD-----------DSSILVHCPCTKKTKAK 514 (723)
Q Consensus 451 ~l~s~sdg~I~vwd~~~~~~~~~~~~----~~~~v~~l~~~p~~-~l~sgs~-----------dg~I~iwd~~~~~~~~~ 514 (723)
++.+.++.|.+||..+++....... ....+..++++|+| .+++... .+.|+.++.. ++...
T Consensus 67 -l~v~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~- 143 (297)
T 3g4e_A 67 -YVATIGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK- 143 (297)
T ss_dssp -EEEEETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-
T ss_pred -EEEEECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-
Confidence 5555677899999988765433322 12357889999999 4443322 1344555543 44333
Q ss_pred EcCcCCcEEEEEEcCCCCEEEE-EeCCCcEEEEeC--CCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cC
Q 004924 515 LKGHQNRITCLAYSLSLNVLVS-SGADAQLCVWDA--VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE 590 (723)
Q Consensus 515 l~~~~~~i~~l~~spdg~~l~s-~s~dg~I~vwd~--~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~d 590 (723)
+..+....+.++|+|+++.++. .+.++.|.+||+ .+|.......+..+.. +. ..+..++++++|.+.++. .+
T Consensus 144 ~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~-~~---~~p~g~~~d~~G~lwva~~~~ 219 (297)
T 3g4e_A 144 YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK-EE---QIPDGMCIDAEGKLWVACYNG 219 (297)
T ss_dssp EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG-GG---CEEEEEEEBTTSCEEEEEETT
T ss_pred EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCC-CC---CCCCeeEECCCCCEEEEEcCC
Confidence 3333445688999999987654 455788999987 4554322222222222 11 467899999999877775 66
Q ss_pred CcEEEEECCCCceeEEecCCCCCCCeEEEEEe-eCCcEEEEEeC
Q 004924 591 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSCK 633 (723)
Q Consensus 591 g~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~s-pdg~~l~sgs~ 633 (723)
+.|.+||..+++.+..+..+ ...+++++|+ |+++.|++++.
T Consensus 220 ~~v~~~d~~tG~~~~~i~~p--~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVKLP--VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TEEEEECTTTCCEEEEEECS--SSBEEEEEEESGGGCEEEEEEB
T ss_pred CEEEEEcCCCceEEEEEECC--CCCceEEEEeCCCCCEEEEEcC
Confidence 78999999889988887643 5679999998 88887776654
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.25 E-value=6.3e-09 Score=106.93 Aligned_cols=222 Identities=11% Similarity=0.010 Sum_probs=145.9
Q ss_pred CCeEEEEEe--CCEEEEE-e-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEE
Q 004924 440 DSISCFALR--GSHLFSA-S-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK 514 (723)
Q Consensus 440 ~~V~~v~~s--~~~l~s~-s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~ 514 (723)
.---+..|+ ++.|+.. . ++.|..||..+++. ..+. ....+.+++++++| ++++ . ++.|.+||..+++....
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEE
Confidence 344577887 4444444 4 78999999988765 3332 34678999999999 5444 4 56899999988765433
Q ss_pred EcC----cCCcEEEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccC
Q 004924 515 LKG----HQNRITCLAYSLSLNVLVSSGAD---------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 581 (723)
Q Consensus 515 l~~----~~~~i~~l~~spdg~~l~s~s~d---------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spd 581 (723)
... ....+++++++|+|++.++...+ ..-.+|.+..... +..+.... .....++|+|+
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-----~~~~~~~~----~~pngi~~spd 159 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-----VKKYFDQV----DISNGLDWSLD 159 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-----EEEEEEEE----SBEEEEEECTT
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-----EEEEeecc----ccccceEEcCC
Confidence 322 22458899999999976654321 2334554443111 11011111 35678999999
Q ss_pred CCEEEEE--cCCcEEEEEC--CCCcee--EEec-CCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecc
Q 004924 582 QIHLLSI--HEGQIDVYEA--PTLNHT--SQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLT 654 (723)
Q Consensus 582 g~~l~~s--~dg~I~vwd~--~~~~~~--~~~~-~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 654 (723)
++.++.+ .++.|.+||+ .++... ..+. ...+......++++++|++.++...++.|..||..+|+.+..+..+
T Consensus 160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 9987763 5789999997 455432 1121 1112356788999999988888877889999999999988877532
Q ss_pred cccCCCCccCccceEEEEEe-cCCCCEEEEEE
Q 004924 655 AYAQPGTISLELYPLVIAAH-PLEPNRIALGL 685 (723)
Q Consensus 655 ~~~~~g~~~~~v~~~~v~~s-p~d~~~las~s 685 (723)
. ..+++++|. | +++.|..++
T Consensus 240 --------~--~~~t~~~f~g~-d~~~L~vt~ 260 (297)
T 3g4e_A 240 --------V--DKTTSCCFGGK-NYSEMYVTC 260 (297)
T ss_dssp --------S--SBEEEEEEESG-GGCEEEEEE
T ss_pred --------C--CCceEEEEeCC-CCCEEEEEc
Confidence 1 235699998 7 666655444
No 211
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.25 E-value=1.7e-09 Score=124.56 Aligned_cols=291 Identities=12% Similarity=0.055 Sum_probs=182.3
Q ss_pred CCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCC-CCe-EEEEEeCCEEEEEe-CCcEEE
Q 004924 386 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK-DSI-SCFALRGSHLFSAS-GGKISI 462 (723)
Q Consensus 386 g~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V-~~v~~s~~~l~s~s-dg~I~v 462 (723)
+..++.++.++.|..+|..+++. +|......-..... ... ..+ ..++..+..+++++ |+.|..
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~------------~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~v~v~~~dg~l~A 135 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRL------------IWKYDPQSDRHRAG--EACCDAVNRGVAVWKGKVYVGVLDGRLEA 135 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCE------------EEEECCCCCGGGGG--GCTTCSCCCCCEEETTEEEEECTTSEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCce------------eEEEcCCCCccccc--cccccCCCCccEEECCEEEEEccCCEEEE
Confidence 55677778888898888875433 35433221100000 000 011 12334477788888 999999
Q ss_pred EEcCCCcEEEEEeCC--CCCeEEEEEcC---CCeEEEEE------CCCcEEEEeCCCCcEEEEEcCcC------------
Q 004924 463 FSLETFQTLATFANP--PPIATYFILLP---QDLFAFGF------DDSSILVHCPCTKKTKAKLKGHQ------------ 519 (723)
Q Consensus 463 wd~~~~~~~~~~~~~--~~~v~~l~~~p---~~~l~sgs------~dg~I~iwd~~~~~~~~~l~~~~------------ 519 (723)
+|..+|+.+..+... ......+..+| ++.+++++ .+|.|+.||..+|+.+..+....
T Consensus 136 lDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~ 215 (689)
T 1yiq_A 136 IDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGM 215 (689)
T ss_dssp EETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHH
T ss_pred EECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccc
Confidence 999999998887642 11111111122 45444443 36899999999999987764210
Q ss_pred -------------------CcEEEEEEcCCCCEEEEEeCCCc-------------------EEEEeCCCCceeeceeeee
Q 004924 520 -------------------NRITCLAYSLSLNVLVSSGADAQ-------------------LCVWDAVGWKKLCSKFLHS 561 (723)
Q Consensus 520 -------------------~~i~~l~~spdg~~l~s~s~dg~-------------------I~vwd~~~~~~~~~~~l~~ 561 (723)
.....++++|++..++.++.++. |..||.++|+........
T Consensus 216 ~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~- 294 (689)
T 1yiq_A 216 EIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTT- 294 (689)
T ss_dssp HHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESS-
T ss_pred cccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecC-
Confidence 01125788898889999887764 999999998754432221
Q ss_pred eecCCCC----CCCCeEEEEEccCCC---EEEE-EcCCcEEEEECCCCceeEEecCCCC---------------------
Q 004924 562 FQTGLVP----ETTIVNHIQFHPDQI---HLLS-IHEGQIDVYEAPTLNHTSQLVPDKM--------------------- 612 (723)
Q Consensus 562 ~~~~~~~----~~~~v~~l~~spdg~---~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h--------------------- 612 (723)
.|.. ....+.......+|+ .++. +.+|.++++|..+|+.+........
T Consensus 295 ---~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~ 371 (689)
T 1yiq_A 295 ---PGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAA 371 (689)
T ss_dssp ---TTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHC
T ss_pred ---CcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhcc
Confidence 1100 001222223334564 5555 5889999999999998744322110
Q ss_pred ----------------CCCeEEEEEeeCCcEEEEEeC-------------------------------------------
Q 004924 613 ----------------DLPITYATYSCDGKCIYVSCK------------------------------------------- 633 (723)
Q Consensus 613 ----------------~~~v~~l~~spdg~~l~sgs~------------------------------------------- 633 (723)
...-..++|+|+...++++..
T Consensus 372 ~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~ 451 (689)
T 1yiq_A 372 YWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAK 451 (689)
T ss_dssp TTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHT
T ss_pred ccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCC
Confidence 000113788998888877532
Q ss_pred --CCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCceeeecCC
Q 004924 634 --SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLP 706 (723)
Q Consensus 634 --dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~w~~~~ 706 (723)
+|.|+.||+.+|+.+..+..+. ... .-.+.. .+.++++++.||.++.||..+|+..|....
T Consensus 452 ~~~g~l~A~D~~tG~~~W~~~~~~---------~~~--~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 452 SWSGKLIAWDPVKQQAAWEVPYVT---------IFN--GGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp TCEEEEEEEETTTTEEEEEEEESS---------SCC--CCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CcceeEEEEECCCCCeEeEccCCC---------Ccc--CccceE-CCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 3779999999999988876421 122 223444 577999999999999999999999998854
No 212
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.25 E-value=1.2e-09 Score=125.41 Aligned_cols=294 Identities=10% Similarity=0.023 Sum_probs=185.9
Q ss_pred CCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCcEEEEE
Q 004924 386 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFS 464 (723)
Q Consensus 386 g~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~I~vwd 464 (723)
+..++.++.++.|..+|..+++. +|......................+++.+..+++++ |+.+..+|
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~------------~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD 144 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNR------------IWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALD 144 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEE------------EEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcE------------EEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEE
Confidence 44567777788888888775432 354332211000000000000113344577777877 99999999
Q ss_pred cCCCcEEEEEeCC-C----CCeEEEEEcCCCeEEEEEC------CCcEEEEeCCCCcEEEEEcCcCCc------------
Q 004924 465 LETFQTLATFANP-P----PIATYFILLPQDLFAFGFD------DSSILVHCPCTKKTKAKLKGHQNR------------ 521 (723)
Q Consensus 465 ~~~~~~~~~~~~~-~----~~v~~l~~~p~~~l~sgs~------dg~I~iwd~~~~~~~~~l~~~~~~------------ 521 (723)
..+|+.+..+... . ..+.+.-...++.+++++. ++.|+.+|..+|+.+..+......
T Consensus 145 ~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~ 224 (677)
T 1kb0_A 145 AATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKR 224 (677)
T ss_dssp TTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHH
T ss_pred CCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccc
Confidence 9999999888754 2 1121111111345555543 689999999999998777532111
Q ss_pred --------------------EEEEEEcCCCCEEEEEeCCC-------------------cEEEEeCCCCceeeceeeeee
Q 004924 522 --------------------ITCLAYSLSLNVLVSSGADA-------------------QLCVWDAVGWKKLCSKFLHSF 562 (723)
Q Consensus 522 --------------------i~~l~~spdg~~l~s~s~dg-------------------~I~vwd~~~~~~~~~~~l~~~ 562 (723)
...++++|++..++.++.++ .|..+|.++|+........
T Consensus 225 g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~-- 302 (677)
T 1kb0_A 225 AARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQET-- 302 (677)
T ss_dssp HHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS--
T ss_pred ccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecC--
Confidence 12578889888988887664 4999999998654432221
Q ss_pred ecCCC----CCCCCeEEEEEccCC---CEEEE-EcCCcEEEEECCCCceeEEecCCCC---------CCCe---------
Q 004924 563 QTGLV----PETTIVNHIQFHPDQ---IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM---------DLPI--------- 616 (723)
Q Consensus 563 ~~~~~----~~~~~v~~l~~spdg---~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h---------~~~v--------- 616 (723)
.|. ........+....+| ..++. +.+|.++++|..+|+.+..+..... ..++
T Consensus 303 --~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~ 380 (677)
T 1kb0_A 303 --PGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGS 380 (677)
T ss_dssp --TTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTT
T ss_pred --CCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCC
Confidence 110 000122333444577 45666 5899999999999998876643210 0011
Q ss_pred ---------------EEEEEeeCCcEEEEEeCC-------------------------------------------CcEE
Q 004924 617 ---------------TYATYSCDGKCIYVSCKS-------------------------------------------GHVK 638 (723)
Q Consensus 617 ---------------~~l~~spdg~~l~sgs~d-------------------------------------------g~I~ 638 (723)
..++++|++..+++...+ |.|.
T Consensus 381 ~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~ 460 (677)
T 1kb0_A 381 KPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLL 460 (677)
T ss_dssp SCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEE
T ss_pred CccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEE
Confidence 156889998888876432 7899
Q ss_pred EEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCceeeecCCC
Q 004924 639 VFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 707 (723)
Q Consensus 639 iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~w~~~~~ 707 (723)
.||+.+|+.+..+... ...+ ...+.+ .+..+++++.||.+++||..+++..|....+
T Consensus 461 A~D~~tG~~~W~~~~~---------~~~~--~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 517 (677)
T 1kb0_A 461 AWDPVAQKAAWSVEHV---------SPWN--GGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTG 517 (677)
T ss_dssp EEETTTTEEEEEEEES---------SSCC--CCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred EEeCCCCcEEeecCCC---------CCCc--CcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCC
Confidence 9999999998887532 1222 333445 5778888999999999999999999988543
No 213
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.24 E-value=1.9e-08 Score=107.01 Aligned_cols=304 Identities=10% Similarity=-0.015 Sum_probs=183.9
Q ss_pred CCCEEEEEeCCCeEEEEeecccCCCCcee-EEecCCCC---C--CCceEEEEEeCCCCEEEEEECCCcEEEEeccCCccc
Q 004924 336 DADSAVCAKSLEKSVNLKLQLINEPSECR-TLLLPDNS---F--GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 409 (723)
Q Consensus 336 dg~~la~~s~dg~v~iw~~~~~~~~~~~~-~~~l~~~~---h--~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~ 409 (723)
++..+++++.++.|..+|..+ ++.. ...++... + ...+.+ ....++..++.++.++.+..+|..+++.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~t----G~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~- 125 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADD----GKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTV- 125 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTT----CCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCE-
T ss_pred ECCEEEEEcCCCeEEEEEccC----CceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCE-
Confidence 466788888889999999874 3332 23232100 0 122322 2223455688888899999998774332
Q ss_pred ccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCe-----EE
Q 004924 410 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIA-----TY 483 (723)
Q Consensus 410 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v-----~~ 483 (723)
+|....+. .........+..++.++ ++.+..+|..+|+.+.......... ..
T Consensus 126 -----------~W~~~~~~-----------~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~ 183 (376)
T 3q7m_A 126 -----------AWQTKVAG-----------EALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESA 183 (376)
T ss_dssp -----------EEEEECSS-----------CCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCC
T ss_pred -----------EEEEeCCC-----------ceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCC
Confidence 24322110 01111123366777777 8999999999999888776432211 11
Q ss_pred EEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEcCcCCc-------EEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCcee
Q 004924 484 FILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNR-------ITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKL 554 (723)
Q Consensus 484 l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~-------i~~l~~sp--dg~~l~s~s~dg~I~vwd~~~~~~~ 554 (723)
.... ++.+++++.++.+..+|..+|+.+......... +..+...| .+..++.++.++.+..+|..+|+..
T Consensus 184 ~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~ 262 (376)
T 3q7m_A 184 PTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIM 262 (376)
T ss_dssp CEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEE
T ss_pred cEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEE
Confidence 2222 347778888999999999999988766532110 00011111 2457788888999999999987543
Q ss_pred eceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC
Q 004924 555 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS 634 (723)
Q Consensus 555 ~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d 634 (723)
..... .....+... ++..++++.++.+..+|..+++......... ...+..... .+..|++++.+
T Consensus 263 w~~~~-----------~~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~--~~~~l~v~~~~ 327 (376)
T 3q7m_A 263 WKREL-----------GSVNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLWTQSDLL-HRLLTSPVL--YNGNLVVGDSE 327 (376)
T ss_dssp EEECC-----------CCEEEEEEE-TTEEEEEETTCCEEEEETTTCCEEEEECTTT-TSCCCCCEE--ETTEEEEECTT
T ss_pred eeccC-----------CCCCCceEE-CCEEEEEcCCCeEEEEECCCCcEEEeecccC-CCcccCCEE--ECCEEEEEeCC
Confidence 32211 233344443 3344444688999999999999876664211 222222222 35678899999
Q ss_pred CcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEec
Q 004924 635 GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 695 (723)
Q Consensus 635 g~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~ 695 (723)
|.|+++|..+|+.+...... ...+.. .... .+..|..++.||.|+.|+.
T Consensus 328 g~l~~~d~~tG~~~~~~~~~--------~~~~~~-~~~~---~~~~l~v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 328 GYLHWINVEDGRFVAQQKVD--------SSGFQT-EPVA---ADGKLLIQAKDGTVYSITR 376 (376)
T ss_dssp SEEEEEETTTCCEEEEEECC--------TTCBCS-CCEE---ETTEEEEEBTTSCEEEEEC
T ss_pred CeEEEEECCCCcEEEEEecC--------CCccee-CCEE---ECCEEEEEeCCCEEEEEeC
Confidence 99999999999988876531 111211 1111 2357888899999999873
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.23 E-value=5.1e-09 Score=112.79 Aligned_cols=245 Identities=9% Similarity=-0.034 Sum_probs=160.2
Q ss_pred CCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCC--cEEEEeCCCCcEEE
Q 004924 440 DSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS--SILVHCPCTKKTKA 513 (723)
Q Consensus 440 ~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg--~I~iwd~~~~~~~~ 513 (723)
.....++|+ ++++++.. ++.|++||..++......... .... ++|+|++ .++++..++ .|.+|+..++....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 467889998 55444444 689999999887776555443 3333 8999999 888887766 79999987765544
Q ss_pred EE----cCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCC-eEEEEEccCCCEEEE-
Q 004924 514 KL----KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI-VNHIQFHPDQIHLLS- 587 (723)
Q Consensus 514 ~l----~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~-v~~l~~spdg~~l~~- 587 (723)
.+ ......+.+++++|++..|+++..++.|+.||..++......... ..+... .. ...++|+|++..|++
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~--~~g~~~--~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE--LSGSLG--TNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC--CCSCCC--CSSCCEEEEETTTTEEEEE
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc--ccCCCC--CCccccEEEeCCCCEEEEE
Confidence 44 224466788999995555666777889999999875321100000 111110 11 139999996555554
Q ss_pred E-cCCcEEEEECCCCceeEEecCCC-------------CCCCeEEEEEeeCCcEEEEEe-CCCcEEEEECCCCcEEEEee
Q 004924 588 I-HEGQIDVYEAPTLNHTSQLVPDK-------------MDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQIN 652 (723)
Q Consensus 588 s-~dg~I~vwd~~~~~~~~~~~~~~-------------h~~~v~~l~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~ 652 (723)
. .++.|+.|+... . +..+.... .-.....++++|+|+++++-+ .++.|+.|+..++.... +.
T Consensus 285 d~~~~~I~~~~~~g-~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~-~~ 361 (409)
T 3hrp_A 285 DQNLSSVYKITPDG-E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST-VA 361 (409)
T ss_dssp ETTTTEEEEECTTC-C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE-EE
T ss_pred eCCCCEEEEEecCC-C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE-Ee
Confidence 3 678999999854 3 22332211 024578999999999777777 78999999988887543 33
Q ss_pred cccccCCCCcc------CccceEEEEEecCCCCEEEEEECCCcEEEEec
Q 004924 653 LTAYAQPGTIS------LELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 695 (723)
Q Consensus 653 ~~~~~~~g~~~------~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~ 695 (723)
..... .|..+ .--.+..++++| ++.++++-..++.|+.+++
T Consensus 362 g~~~~-~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 362 GQVDV-ASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ECTTC-BSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCCC-CCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 22100 01000 012366999999 7888888888889988876
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.22 E-value=4.7e-10 Score=118.54 Aligned_cols=188 Identities=11% Similarity=0.015 Sum_probs=134.7
Q ss_pred CceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEE
Q 004924 375 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFS 454 (723)
Q Consensus 375 ~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s 454 (723)
..++.+++++....+++|+.+ .+.+|++.............+ + ..... .+.. |+.++|.+.+|++
T Consensus 38 ~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~-------~-~~~~~-----~lp~-V~~l~fd~~~L~v 102 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPL-------T-FKWEK-----EIPD-VIFVCFHGDQVLV 102 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCC-------C-CSEEE-----ECTT-EEEEEEETTEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccc-------c-ceEEe-----eCCC-eeEEEECCCEEEE
Confidence 378999999999999999987 455698764321000000000 0 00111 2555 9999998888888
Q ss_pred EeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEE
Q 004924 455 ASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 534 (723)
Q Consensus 455 ~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l 534 (723)
+.++.|++||+.+.........+...+.++.+.+. .+++++.||.|.+||+.++.... +...|+|++|+|+| +
T Consensus 103 ~~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~ 175 (388)
T 1xip_A 103 STRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--L 175 (388)
T ss_dssp EESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--E
T ss_pred EcCCcEEEEEchhhhccCccceeecceeeEEecCC-CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--e
Confidence 88999999999887766666677777887776654 48889999999999999887654 44689999999999 6
Q ss_pred EEEeCCCcEEEEeCCCCceeeceeeee---eec--CCCCCCCCeEEEEEccCCCEEEE
Q 004924 535 VSSGADAQLCVWDAVGWKKLCSKFLHS---FQT--GLVPETTIVNHIQFHPDQIHLLS 587 (723)
Q Consensus 535 ~s~s~dg~I~vwd~~~~~~~~~~~l~~---~~~--~~~~~~~~v~~l~~spdg~~l~~ 587 (723)
+.|..||++++|+..+++......+.. +.. +|. ..|.++.|.+++.++++
T Consensus 176 ~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~---~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 176 AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEE---YSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTT---SEEEEEEESSSSEEEEE
T ss_pred EEEEcCCcEEEEcCCCccccccceecCCcccccccCCC---eeEEEEEEecCCeEEEE
Confidence 789999999999988764311111210 111 233 68999999999999987
No 216
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.20 E-value=3.1e-09 Score=113.81 Aligned_cols=240 Identities=18% Similarity=0.082 Sum_probs=159.3
Q ss_pred EEEEe--CCEEEEEe-----------CCcEEEEEcCCCcEEEEEeCC-------CCCeEEEEEcCCC-eEEEEEC--CCc
Q 004924 444 CFALR--GSHLFSAS-----------GGKISIFSLETFQTLATFANP-------PPIATYFILLPQD-LFAFGFD--DSS 500 (723)
Q Consensus 444 ~v~~s--~~~l~s~s-----------dg~I~vwd~~~~~~~~~~~~~-------~~~v~~l~~~p~~-~l~sgs~--dg~ 500 (723)
.++++ +++++++. ++.|.++|..+++.+..+.-. ......+.++||| +++++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 78898 66666553 468999999999998887522 1234578999999 8887764 578
Q ss_pred EEEEeCCCCcEEEEEcCcCCcEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEc
Q 004924 501 ILVHCPCTKKTKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 579 (723)
Q Consensus 501 I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~s 579 (723)
|.+.|+.+++.+..+..... ....|++ ..+++.+.||.+.+.+..+++...... ..+..+.. .....+.++
T Consensus 202 VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~-~~~~v~~~---p~~~~~~~~ 273 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT-EVFHTEDE---LLINHPAFS 273 (426)
T ss_dssp EEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC-CCCSCTTS---CBCSCCEEC
T ss_pred EEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee-eeeccCCC---ceeeEeeec
Confidence 99999999999888764221 2333433 556667778888777775543221100 10111111 111245678
Q ss_pred cCCCEEEE-EcCCcEEEEECCCCcee--EEecCC--C------CCCCeEEEEEeeCCcEEEEEeC----------CCcEE
Q 004924 580 PDQIHLLS-IHEGQIDVYEAPTLNHT--SQLVPD--K------MDLPITYATYSCDGKCIYVSCK----------SGHVK 638 (723)
Q Consensus 580 pdg~~l~~-s~dg~I~vwd~~~~~~~--~~~~~~--~------h~~~v~~l~~spdg~~l~sgs~----------dg~I~ 638 (723)
+++..++. +..+.+.+.|...+... ..+... . .......++++|+++.++++.. ++.|.
T Consensus 274 ~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~Vs 353 (426)
T 3c75_H 274 LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVV 353 (426)
T ss_dssp TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEE
T ss_pred CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEE
Confidence 98877665 57789999998654421 111100 0 0111123689999988777643 35799
Q ss_pred EEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCC-EEEEEE-CCCcEEEEecCCCceeee
Q 004924 639 VFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGL-TNGRVHVIEPLESEVEWG 703 (723)
Q Consensus 639 iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~-~las~s-~Dg~v~iWd~~~~~~~w~ 703 (723)
++|..+++.+.++... .. +.+++|+| |++ +++++. .++.|.|+|..+++..-.
T Consensus 354 VID~~T~kvv~~I~vg---------~~--P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 354 VLNAETGERINKIELG---------HE--IDSINVSQ-DAEPLLYALSAGTQTLHIYDAATGEELRS 408 (426)
T ss_dssp EEETTTCCEEEEEEEE---------EE--ECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEECCCCeEEEEEECC---------CC--cCeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence 9999999999988642 12 34899999 888 888877 589999999999886533
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.20 E-value=2.1e-08 Score=104.52 Aligned_cols=218 Identities=11% Similarity=0.052 Sum_probs=141.5
Q ss_pred eEEEEEe--CCE-EEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEc
Q 004924 442 ISCFALR--GSH-LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK 516 (723)
Q Consensus 442 V~~v~~s--~~~-l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~ 516 (723)
..+..|+ ++. +++.. ++.|..||..+++.. .+. ....+.+++|+++| .+++ +.+ .|.+||..+++......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~-~~~-gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEEC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEE-ECC-CEEEEECCCCcEEEEee
Confidence 3466777 344 44444 789999999877543 333 24578999999999 5544 444 49999998887644332
Q ss_pred C----cCCcEEEEEEcCCCCEEEEEeC------CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEE
Q 004924 517 G----HQNRITCLAYSLSLNVLVSSGA------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 586 (723)
Q Consensus 517 ~----~~~~i~~l~~spdg~~l~s~s~------dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~ 586 (723)
. ....++++.++|+|+..++... .+.|..+| +++.. . +.... .....++|+|+|+.++
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~---~---~~~~~----~~~~~i~~s~dg~~ly 194 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT---K---LFADI----SIPNSICFSPDGTTGY 194 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE---E---EEEEE----SSEEEEEECTTSCEEE
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE---E---eeCCC----cccCCeEEcCCCCEEE
Confidence 1 1246889999999987665442 24565566 43211 1 11111 3567899999998876
Q ss_pred EE--cCCcEEEEECC--CC-cee--EEec-CCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccC
Q 004924 587 SI--HEGQIDVYEAP--TL-NHT--SQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ 658 (723)
Q Consensus 587 ~s--~dg~I~vwd~~--~~-~~~--~~~~-~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~ 658 (723)
.+ .++.|.+||+. ++ ... ..+. .......+..++++++|.+.++...++.|..|+. +++.+..+...
T Consensus 195 v~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~---- 269 (326)
T 2ghs_A 195 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP---- 269 (326)
T ss_dssp EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS----
T ss_pred EEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC----
Confidence 63 56799999986 55 321 1121 1112345678999999988777777789999998 57766666421
Q ss_pred CCCccCccceEEEEEe-cCCCCEEEEEECC
Q 004924 659 PGTISLELYPLVIAAH-PLEPNRIALGLTN 687 (723)
Q Consensus 659 ~g~~~~~v~~~~v~~s-p~d~~~las~s~D 687 (723)
.. .+++++|+ | ++..|..++..
T Consensus 270 ----~~--~~~~~af~g~-d~~~L~vt~~~ 292 (326)
T 2ghs_A 270 ----GK--QTTCPAFIGP-DASRLLVTSAR 292 (326)
T ss_dssp ----CS--BEEEEEEEST-TSCEEEEEEBC
T ss_pred ----CC--CcEEEEEecC-CCCEEEEEecC
Confidence 22 25599998 7 66666555433
No 218
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.19 E-value=4.9e-09 Score=112.98 Aligned_cols=239 Identities=10% Similarity=-0.017 Sum_probs=155.2
Q ss_pred CceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEE
Q 004924 375 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 452 (723)
Q Consensus 375 ~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l 452 (723)
...+.++|+++|+.+++...++.|++||..++.. ..... . ..... ++|+ ++.|
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~---------------------~~~~~--~-~~~~~-ia~~~~g~~l 185 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV---------------------TTVHP--G-FKGGK-PAVTKDKQRV 185 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE---------------------EEEEE--T-CCBCB-CEECTTSSEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE---------------------EEeec--c-CCCCc-eeEecCCCcE
Confidence 4788999999999777766678999988663221 11111 1 11222 7888 7788
Q ss_pred EEEe-CC--cEEEEEcCCCcEEEEE----eCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEE----EcCcCC
Q 004924 453 FSAS-GG--KISIFSLETFQTLATF----ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK----LKGHQN 520 (723)
Q Consensus 453 ~s~s-dg--~I~vwd~~~~~~~~~~----~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~----l~~~~~ 520 (723)
+++. ++ .|.+|+...+.....+ ......+.+++++|++ .|+++..++.|+.||..++..... ..++..
T Consensus 186 ~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~ 265 (409)
T 3hrp_A 186 YSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLG 265 (409)
T ss_dssp EEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCC
T ss_pred EEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCC
Confidence 8777 54 7889998766554444 2244567789999954 555577788999999987764332 222222
Q ss_pred cE--EEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceeeceeeeee-ecCCC------CCCCCeEEEEEccCCCEEEE-E-
Q 004924 521 RI--TCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF-QTGLV------PETTIVNHIQFHPDQIHLLS-I- 588 (723)
Q Consensus 521 ~i--~~l~~spd-g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~-~~~~~------~~~~~v~~l~~spdg~~l~~-s- 588 (723)
.- ..++|+|+ +..+++-..++.|+.|+...... ...... ..+.. ..-.....++++|+|.++++ .
T Consensus 266 ~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~---~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~ 342 (409)
T 3hrp_A 266 TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE---WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGF 342 (409)
T ss_dssp CSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE---EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETT
T ss_pred CCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE---EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCC
Confidence 22 38999995 55566666788999999875210 000000 00000 00035789999999996666 4
Q ss_pred cCCcEEEEECCCCceeEEecCCC-------------CCCCeEEEEEeeCCcEEEEEeCCCcEEEEEC
Q 004924 589 HEGQIDVYEAPTLNHTSQLVPDK-------------MDLPITYATYSCDGKCIYVSCKSGHVKVFDT 642 (723)
Q Consensus 589 ~dg~I~vwd~~~~~~~~~~~~~~-------------h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~ 642 (723)
.++.|+.||+.++... ++.... .-.....++++++|.++++-..++.|+.+++
T Consensus 343 ~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 343 KGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 6789999998777643 332210 1245889999999888888888888887765
No 219
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.19 E-value=3.8e-09 Score=121.56 Aligned_cols=312 Identities=11% Similarity=0.069 Sum_probs=188.9
Q ss_pred CCCEEEEEeCCCeEEEEeecccCCCCcee-EEecCCCC-----CC-Cce-EEEEEeCCCCEEEEEECCCcEEEEeccCCc
Q 004924 336 DADSAVCAKSLEKSVNLKLQLINEPSECR-TLLLPDNS-----FG-GRV-VRLIYSHSGDFLVALTQTATHKLWKWQSNK 407 (723)
Q Consensus 336 dg~~la~~s~dg~v~iw~~~~~~~~~~~~-~~~l~~~~-----h~-~~V-~~l~fspdg~~las~s~dg~i~iWd~~~~~ 407 (723)
.+..+++++.++.|.-+|..+ ++.+ .+...... .. ..+ ..+++ ++..++.++.|+.+..+|..+++
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~t----G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~ 142 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARD----GRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQ 142 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTT----CCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred ECCEEEEEcCCCeEEEEECCC----CceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCC
Confidence 355677777788888888764 3322 22111100 00 000 11122 35578888899999999987543
Q ss_pred ccccccceeeeeEEEecCCC-eeeeeccCCCCCCCeE-EEEEeCCEEEEEe-------CCcEEEEEcCCCcEEEEEeCCC
Q 004924 408 QSLEEENVNMESQLYQPSSK-LVMTNDIAADPKDSIS-CFALRGSHLFSAS-------GGKISIFSLETFQTLATFANPP 478 (723)
Q Consensus 408 ~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~V~-~v~~s~~~l~s~s-------dg~I~vwd~~~~~~~~~~~~~~ 478 (723)
. +|..... .. .....+. +....+..++.++ +|.|..||..+|+.+..+....
T Consensus 143 ~------------~W~~~~~~~~-------~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~ 203 (689)
T 1yiq_A 143 R------------AWSVDTRADH-------KRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVP 203 (689)
T ss_dssp E------------EEEEECCSCT-------TSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSC
T ss_pred E------------eeeecCcCCC-------CCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccC
Confidence 3 3443221 00 0000111 1112244555443 4789999999999988775210
Q ss_pred -------------------------------CCeEEEEEcCCC-eEEEEECCCc-------------------EEEEeCC
Q 004924 479 -------------------------------PIATYFILLPQD-LFAFGFDDSS-------------------ILVHCPC 507 (723)
Q Consensus 479 -------------------------------~~v~~l~~~p~~-~l~sgs~dg~-------------------I~iwd~~ 507 (723)
.....++++|++ .++.++.++. |..+|.+
T Consensus 204 ~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~ 283 (689)
T 1yiq_A 204 GDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNAD 283 (689)
T ss_dssp CCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETT
T ss_pred CCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEcc
Confidence 001257788888 8888887763 9999999
Q ss_pred CCcEEEEEcC--cC-------CcEEEEEEcCCCC---EEEEEeCCCcEEEEeCCCCceeeceeeeee-------------
Q 004924 508 TKKTKAKLKG--HQ-------NRITCLAYSLSLN---VLVSSGADAQLCVWDAVGWKKLCSKFLHSF------------- 562 (723)
Q Consensus 508 ~~~~~~~l~~--~~-------~~i~~l~~spdg~---~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~------------- 562 (723)
+|+.+..++. |. .+........+|+ .++.++.+|.++++|.++|+.+....+...
T Consensus 284 TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~p 363 (689)
T 1yiq_A 284 TGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRP 363 (689)
T ss_dssp TCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEE
T ss_pred CCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCc
Confidence 9999987764 21 1222223333565 788899999999999999976532221100
Q ss_pred ----------ecCCC----C---CCCCeEEEEEccCCCEEEEE-c-----------------------------------
Q 004924 563 ----------QTGLV----P---ETTIVNHIQFHPDQIHLLSI-H----------------------------------- 589 (723)
Q Consensus 563 ----------~~~~~----~---~~~~v~~l~~spdg~~l~~s-~----------------------------------- 589 (723)
..+.. + ....-..++++|+...+++. .
T Consensus 364 i~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~ 443 (689)
T 1yiq_A 364 ILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGA 443 (689)
T ss_dssp EECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSH
T ss_pred ccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCccc
Confidence 00000 0 00011237889988777763 1
Q ss_pred ----------CCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCC
Q 004924 590 ----------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP 659 (723)
Q Consensus 590 ----------dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~ 659 (723)
+|.|+.||+.+++.+-.+.. ..++....++..+.++++|+.||.++.||.++|+.+..+....
T Consensus 444 ~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~---- 516 (689)
T 1yiq_A 444 EGLLEMAKSWSGKLIAWDPVKQQAAWEVPY---VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAAS---- 516 (689)
T ss_dssp HHHHHHHTTCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS----
T ss_pred ccCCCCCCCcceeEEEEECCCCCeEeEccC---CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCC----
Confidence 36799999999998877753 2333445677788999999999999999999999998886421
Q ss_pred CCccCccceEEEEEecCCCC-EEEEEE
Q 004924 660 GTISLELYPLVIAAHPLEPN-RIALGL 685 (723)
Q Consensus 660 g~~~~~v~~~~v~~sp~d~~-~las~s 685 (723)
.+...-+.|.. +|+ |+++.+
T Consensus 517 -----~~~~~p~ty~~-~G~qyv~~~~ 537 (689)
T 1yiq_A 517 -----GVMAAPVTYSV-DGEQYVTFMA 537 (689)
T ss_dssp -----CCCSCCEEEEE-TTEEEEEEEE
T ss_pred -----CcccCceEEEE-CCEEEEEEEe
Confidence 12223466767 665 455443
No 220
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.18 E-value=2.1e-08 Score=106.65 Aligned_cols=284 Identities=9% Similarity=0.023 Sum_probs=173.4
Q ss_pred CCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeE-EEEEeCCEEEEEe-CCcEEE
Q 004924 385 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFSAS-GGKISI 462 (723)
Q Consensus 385 dg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~s~~~l~s~s-dg~I~v 462 (723)
++..++.++.++.|..+|..+++. +|....+..... . ......+. .+...+..++.++ ++.|..
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~------------~W~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~v~v~~~~g~l~a 117 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKE------------IWSVSLAEKDGW-F-SKEPALLSGGVTVSGGHVYIGSEKAQVYA 117 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCE------------EEEEECCC---C-C-SCCCCCEEEEEEEETTEEEEEETTSEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCce------------eeeecCcccccc-c-cccCcccccCceEeCCEEEEEcCCCEEEE
Confidence 356678888889999988764332 243221110000 0 00022332 2333477777777 899999
Q ss_pred EEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEcCcCCcE-----EEEEEcCCCCEEEEE
Q 004924 463 FSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI-----TCLAYSLSLNVLVSS 537 (723)
Q Consensus 463 wd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i-----~~l~~spdg~~l~s~ 537 (723)
+|..+|+.+................ ++.+++++.++.|..+|..+|+.+.......... ...... +..++++
T Consensus 118 ~d~~tG~~~W~~~~~~~~~~~p~~~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g 194 (376)
T 3q7m_A 118 LNTSDGTVAWQTKVAGEALSRPVVS-DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVG 194 (376)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEEC
T ss_pred EECCCCCEEEEEeCCCceEcCCEEE-CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEE
Confidence 9999999887776443222122222 3478888899999999999999887765432111 111222 3467788
Q ss_pred eCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCC---e-EEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCCCCC
Q 004924 538 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI---V-NHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMD 613 (723)
Q Consensus 538 s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~---v-~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~ 613 (723)
+.++.+..+|..+|+......... +.+... ... + ...... ++..++.+.++.+..+|..+++.+.....
T Consensus 195 ~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~-~~~~~~~~~~p~~~-~~~v~~~~~~g~l~~~d~~tG~~~w~~~~---- 267 (376)
T 3q7m_A 195 GDNGRVSAVLMEQGQMIWQQRISQ-ATGSTE-IDRLSDVDTTPVVV-NGVVFALAYNGNLTALDLRSGQIMWKREL---- 267 (376)
T ss_dssp CTTTEEEEEETTTCCEEEEEECCC-------------CCCCCCEEE-TTEEEEECTTSCEEEEETTTCCEEEEECC----
T ss_pred cCCCEEEEEECCCCcEEEEEeccc-CCCCcc-cccccccCCCcEEE-CCEEEEEecCcEEEEEECCCCcEEeeccC----
Confidence 889999999999886544333220 000000 000 0 011111 33334445789999999999998766542
Q ss_pred CCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEE
Q 004924 614 LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 693 (723)
Q Consensus 614 ~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW 693 (723)
.....+.. ++..+++++.+|.|+.+|..+|+.+....... ..... .... .+..|..++.+|.|+++
T Consensus 268 ~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~-------~~~~~--~~~~---~~~~l~v~~~~g~l~~~ 333 (376)
T 3q7m_A 268 GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLL-------HRLLT--SPVL---YNGNLVVGDSEGYLHWI 333 (376)
T ss_dssp CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTT-------TSCCC--CCEE---ETTEEEEECTTSEEEEE
T ss_pred CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccC-------CCccc--CCEE---ECCEEEEEeCCCeEEEE
Confidence 22334333 46778888899999999999999877664210 11111 1222 24678888899999999
Q ss_pred ecCCCceeeecCC
Q 004924 694 EPLESEVEWGKLP 706 (723)
Q Consensus 694 d~~~~~~~w~~~~ 706 (723)
|..+++..|....
T Consensus 334 d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 334 NVEDGRFVAQQKV 346 (376)
T ss_dssp ETTTCCEEEEEEC
T ss_pred ECCCCcEEEEEec
Confidence 9999999997754
No 221
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.18 E-value=4.4e-09 Score=120.81 Aligned_cols=280 Identities=11% Similarity=0.065 Sum_probs=181.2
Q ss_pred CCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCC-eeeeeccCCCCCCCeE-EEEEeCCEEEEEe------
Q 004924 385 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK-LVMTNDIAADPKDSIS-CFALRGSHLFSAS------ 456 (723)
Q Consensus 385 dg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~V~-~v~~s~~~l~s~s------ 456 (723)
++..++.++.|+.+..+|..+++. +|....+ ... ....+. .....+..++.++
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~------------~W~~~~~~~~~-------~~~~~~~~p~v~~~~v~v~~~~~~~~ 187 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKE------------VWHQNTFEGQK-------GSLTITGAPRVFKGKVIIGNGGAEYG 187 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCE------------EEEEETTTTCC-------SSCBCCSCCEEETTEEEECCBCTTTC
T ss_pred ECCEEEEEcCCCEEEEEECCCCCE------------EeeecCCcCcC-------cCcccccCcEEECCEEEEEecccccC
Confidence 456788888999999999875433 3543322 000 001111 1112355555544
Q ss_pred -CCcEEEEEcCCCcEEEEEeCCCCC--------------------------------eEEEEEcCCC-eEEEEECCC---
Q 004924 457 -GGKISIFSLETFQTLATFANPPPI--------------------------------ATYFILLPQD-LFAFGFDDS--- 499 (723)
Q Consensus 457 -dg~I~vwd~~~~~~~~~~~~~~~~--------------------------------v~~l~~~p~~-~l~sgs~dg--- 499 (723)
+|.|..+|..+|+.+..+...... ...++++|++ .++.++.++
T Consensus 188 ~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 188 VRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPW 267 (677)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESS
T ss_pred CCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccc
Confidence 488999999999999887632211 1246788888 887777654
Q ss_pred ----------------cEEEEeCCCCcEEEEEcC--cC-------CcEEEEEEcCCC---CEEEEEeCCCcEEEEeCCCC
Q 004924 500 ----------------SILVHCPCTKKTKAKLKG--HQ-------NRITCLAYSLSL---NVLVSSGADAQLCVWDAVGW 551 (723)
Q Consensus 500 ----------------~I~iwd~~~~~~~~~l~~--~~-------~~i~~l~~spdg---~~l~s~s~dg~I~vwd~~~~ 551 (723)
.|..+|.++|+.+..++. |. .....+....+| ..++.++.+|.++++|..+|
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 599999999999887754 21 122223334477 67899999999999999998
Q ss_pred ceeeceeeeeee-----cCCC------------------C---CCCCeEEEEEccCCCEEEEE-cC--------------
Q 004924 552 KKLCSKFLHSFQ-----TGLV------------------P---ETTIVNHIQFHPDQIHLLSI-HE-------------- 590 (723)
Q Consensus 552 ~~~~~~~l~~~~-----~~~~------------------~---~~~~v~~l~~spdg~~l~~s-~d-------------- 590 (723)
+.+....+.... .... + ....-..++++|++..+++. .+
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g 427 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN 427 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence 765443321000 0000 0 00001257889998888763 21
Q ss_pred -----------------------------CcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEE
Q 004924 591 -----------------------------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 641 (723)
Q Consensus 591 -----------------------------g~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd 641 (723)
+.|..||+.+++.+-.+.. ..++....++.++..++.++.||.+++||
T Consensus 428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~g~~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---VSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC---CCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence 6799999999998877753 34455566778888999999999999999
Q ss_pred CCCCcEEEEeecccccCCCCccCccceEEEEEecCCCC-EEEEEEC----------------CCcEEEEecC
Q 004924 642 TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGLT----------------NGRVHVIEPL 696 (723)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~-~las~s~----------------Dg~v~iWd~~ 696 (723)
..+|+.+..+.... .+...-+.|.+ +|+ ++++.+. .+.+.+|.+.
T Consensus 505 ~~tG~~lw~~~~~~---------~~~~~p~~y~~-~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~ 566 (677)
T 1kb0_A 505 AATGEKLWEAPTGT---------GVVAAPSTYMV-DGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG 566 (677)
T ss_dssp TTTCCEEEEEECSS---------CCCSCCEEEEE-TTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred CCCCceeeeeeCCC---------CcccCCEEEEe-CCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence 99999999887421 22233566767 665 4444333 3678888876
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.16 E-value=3.8e-08 Score=102.59 Aligned_cols=224 Identities=11% Similarity=-0.049 Sum_probs=143.2
Q ss_pred ceEEEEEeCCCCE-EEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCEEE
Q 004924 376 RVVRLIYSHSGDF-LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLF 453 (723)
Q Consensus 376 ~V~~l~fspdg~~-las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~ 453 (723)
-..+..|+|++.. +++...++.|..|+..++.. ..|. ....+.+++|+ +..++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-----------~~~~--------------~~~~v~~i~~~~dg~l~ 104 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK-----------TVHA--------------LPFMGSALAKISDSKQL 104 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-----------EEEE--------------CSSCEEEEEEEETTEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-----------EEEE--------------CCCcceEEEEeCCCeEE
Confidence 3467889998554 44555578888887653211 1111 23568899998 44444
Q ss_pred EEeCCcEEEEEcCCCcEEEEEeCC----CCCeEEEEEcCCC-eEEEEEC------CCcEEEEeCCCCcEEEEEcCcCCcE
Q 004924 454 SASGGKISIFSLETFQTLATFANP----PPIATYFILLPQD-LFAFGFD------DSSILVHCPCTKKTKAKLKGHQNRI 522 (723)
Q Consensus 454 s~sdg~I~vwd~~~~~~~~~~~~~----~~~v~~l~~~p~~-~l~sgs~------dg~I~iwd~~~~~~~~~l~~~~~~i 522 (723)
.++++.|.+||..+++........ ...+.+++++|+| .+++... .+.|..++ +++... +..+....
T Consensus 105 v~~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~ 181 (326)
T 2ghs_A 105 IASDDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIP 181 (326)
T ss_dssp EEETTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSE
T ss_pred EEECCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCccc
Confidence 455555999999888764332211 2357899999999 5444332 24566666 455433 32233457
Q ss_pred EEEEEcCCCCEEEEE-eCCCcEEEEeCC--CC-ceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEE
Q 004924 523 TCLAYSLSLNVLVSS-GADAQLCVWDAV--GW-KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 597 (723)
Q Consensus 523 ~~l~~spdg~~l~s~-s~dg~I~vwd~~--~~-~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd 597 (723)
+.++|+|+|+.++.+ +.++.|.+||+. +| .......+..+. ... ..+..++++++|.+.++. .++.|.+||
T Consensus 182 ~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~-~~~---~~p~gi~~d~~G~lwva~~~~~~v~~~d 257 (326)
T 2ghs_A 182 NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST-GIK---GGMDGSVCDAEGHIWNARWGEGAVDRYD 257 (326)
T ss_dssp EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT-TSS---SEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred CCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECC-CCC---CCCCeeEECCCCCEEEEEeCCCEEEEEC
Confidence 789999999877555 457899999986 54 322112222111 111 456789999999877775 568899999
Q ss_pred CCCCceeEEecCCCCCCCeEEEEEe-eCCcEEEEEeCC
Q 004924 598 APTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSCKS 634 (723)
Q Consensus 598 ~~~~~~~~~~~~~~h~~~v~~l~~s-pdg~~l~sgs~d 634 (723)
. +++.+..+..+ ...+++++|+ ++++.|++++..
T Consensus 258 ~-~g~~~~~i~~~--~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 258 T-DGNHIARYEVP--GKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp T-TCCEEEEEECS--CSBEEEEEEESTTSCEEEEEEBC
T ss_pred C-CCCEEEEEECC--CCCcEEEEEecCCCCEEEEEecC
Confidence 8 67777666542 5579999998 888877665543
No 223
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.15 E-value=1.5e-09 Score=114.10 Aligned_cols=270 Identities=8% Similarity=-0.054 Sum_probs=169.3
Q ss_pred CceEEEEEeCCCCEEEEEEC--CCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCE
Q 004924 375 GRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 451 (723)
Q Consensus 375 ~~V~~l~fspdg~~las~s~--dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~ 451 (723)
..+..++++|+|+.+++... ++.++||.+.+ |... .+. -|.. ....|...+.+++++ ...
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~-----g~~~-~~p--~~~~---------~~~~~~~~p~gv~~d~~g~ 79 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ-----DGLI-PFP--PQSG---------NAIITFDTVLGIKSDGNGI 79 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET-----TEEE-ESC--CCCS---------SCCCCCSCEEEEEECSSSE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC-----CCee-cCC--Cccc---------CcccceeEeeEEEEcCCCc
Confidence 57899999999998888642 34366676542 1110 000 0110 001366789999999 444
Q ss_pred EEEEe-------CCcEEEEEcCCCcEEEEEeCC------CCCeEEEEEcCCC--eEEEEE---CCCcEEEEeCCCCcEEE
Q 004924 452 LFSAS-------GGKISIFSLETFQTLATFANP------PPIATYFILLPQD--LFAFGF---DDSSILVHCPCTKKTKA 513 (723)
Q Consensus 452 l~s~s-------dg~I~vwd~~~~~~~~~~~~~------~~~v~~l~~~p~~--~l~sgs---~dg~I~iwd~~~~~~~~ 513 (723)
|..+. ++.|.+||+.+++.++.+..+ ...+..+++++++ .+++.. .++.|.+||+.+++..+
T Consensus 80 L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r 159 (343)
T 2qe8_A 80 VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR 159 (343)
T ss_dssp EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE
T ss_pred EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE
Confidence 55444 368999999999887777532 2346789999865 445544 57899999999998877
Q ss_pred EEcCcCCcEE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cC-
Q 004924 514 KLKGHQNRIT-CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE- 590 (723)
Q Consensus 514 ~l~~~~~~i~-~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~d- 590 (723)
.+.+|..... ...+.++|..+.+.+.++.++.|. ..+..++|+|+|+.|+++ ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~-----------------------~~~~gia~s~dg~~ly~~~~~~ 216 (343)
T 2qe8_A 160 VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH-----------------------LGVNGIVLDAENEWLYLSPMHS 216 (343)
T ss_dssp ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC-----------------------CCEEEEEECTTSCEEEEEESSC
T ss_pred EecCCCcccccccceeECCEEEEeccCCCceecee-----------------------cccceeEeccCCCEEEEEeCCC
Confidence 7765432111 133445666666666666654432 235689999999988874 33
Q ss_pred CcEEEEECC---CCc-----eeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCc
Q 004924 591 GQIDVYEAP---TLN-----HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI 662 (723)
Q Consensus 591 g~I~vwd~~---~~~-----~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~ 662 (723)
..++.++.. .+. ....+...++......++++++|.++++...++.|.+||..+|+.......
T Consensus 217 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~--------- 287 (343)
T 2qe8_A 217 TSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD--------- 287 (343)
T ss_dssp SEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC---------
T ss_pred CeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC---------
Confidence 355555532 111 000000001133456799999999999998999999999966764333321
Q ss_pred cCccceEEEEEecCCCCEEEEEECCCcEEEEe
Q 004924 663 SLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 694 (723)
Q Consensus 663 ~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd 694 (723)
....++.++++.+ ++.++++.+..+.+.+|.
T Consensus 288 ~~~~~p~~va~~~-~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 288 EKLSWTDSFNFGS-DGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp GGGSCEEEEEECT-TSCEEEEECCGGGSGGGB
T ss_pred CceecCCeeEECC-CCcEEEEeCccccccccc
Confidence 1123466999999 788888777555554443
No 224
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.13 E-value=2.4e-09 Score=123.88 Aligned_cols=240 Identities=12% Similarity=0.073 Sum_probs=151.9
Q ss_pred CCCceEEEEEeCCCCEEEEEEC-----CCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEE
Q 004924 373 FGGRVVRLIYSHSGDFLVALTQ-----TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 447 (723)
Q Consensus 373 h~~~V~~l~fspdg~~las~s~-----dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 447 (723)
|...+..++|||||++||.+.. +.+|++||+.++.. +.... +......++|
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~---------------------~~~~~---~~~k~~~~~W 182 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP---------------------LETPL---KDVKFSGISW 182 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE---------------------EEEEE---EEEESCCCEE
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC---------------------Ccccc---CCceeccEEE
Confidence 6668889999999999886543 24677777764322 11100 0001234567
Q ss_pred e-CCEEEEEe-CC-------------cEEEEEcCCCcE--EEEEeC---CCCCeEEEEEcCCC-eEE-EEEC---CCcEE
Q 004924 448 R-GSHLFSAS-GG-------------KISIFSLETFQT--LATFAN---PPPIATYFILLPQD-LFA-FGFD---DSSIL 502 (723)
Q Consensus 448 s-~~~l~s~s-dg-------------~I~vwd~~~~~~--~~~~~~---~~~~v~~l~~~p~~-~l~-sgs~---dg~I~ 502 (723)
+ |+.|+.++ +. .|++|++.++.. ...+.. +......+.|+||| .++ +.+. ++.|+
T Consensus 183 sDg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~ 262 (693)
T 3iuj_A 183 LGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLY 262 (693)
T ss_dssp ETTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEE
T ss_pred eCCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEE
Confidence 7 77777776 53 399999987643 333332 34457789999999 554 3332 24899
Q ss_pred EEeCCCCc-EEEEEcCcCCcEEEEEEcCCCCEEEEEeC-C---CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEE
Q 004924 503 VHCPCTKK-TKAKLKGHQNRITCLAYSLSLNVLVSSGA-D---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 577 (723)
Q Consensus 503 iwd~~~~~-~~~~l~~~~~~i~~l~~spdg~~l~s~s~-d---g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~ 577 (723)
++|+.++. ....+..+....... |+++|..++..+. + +.|..+|+.++.... ...+.. +. ..+. .
T Consensus 263 ~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~---~~~l~~-~~---~~~~--~ 332 (693)
T 3iuj_A 263 VKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAH---WRDLIP-ER---QQVL--T 332 (693)
T ss_dssp EEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGG---CEEEEC-CC---SSCE--E
T ss_pred EEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccc---cEEEec-CC---CCEE--E
Confidence 99998763 345555565555554 6666766655443 3 579999998753211 121222 22 2343 8
Q ss_pred EccCCCEEEE-E-cCC--cEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC----CcEEEEECCCCcEE
Q 004924 578 FHPDQIHLLS-I-HEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS----GHVKVFDTSTLELR 648 (723)
Q Consensus 578 ~spdg~~l~~-s-~dg--~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d----g~I~iwd~~~~~~~ 648 (723)
|+++++.|+. . .++ .|++||+..+ ....+... ....+..+.+++++..++....+ +.|+.||+.+++..
T Consensus 333 ~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 333 VHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 9999998887 3 444 6899999744 44455332 24567778888888877655544 89999999888643
No 225
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.11 E-value=1e-08 Score=105.73 Aligned_cols=229 Identities=7% Similarity=-0.017 Sum_probs=149.2
Q ss_pred CCCceEEEEEeCCCCE-EEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--C
Q 004924 373 FGGRVVRLIYSHSGDF-LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 449 (723)
Q Consensus 373 h~~~V~~l~fspdg~~-las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~ 449 (723)
+........|+|+|+. +++...++.|..|+... .. ..+. .+...+..++++ |
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g------~~------~~~~-------------~~~~~~~gl~~d~dG 97 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG------TV------DVLL-------------DATAFTNGNAVDAQQ 97 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS------CE------EEEE-------------ESCSCEEEEEECTTS
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC------CE------EEEe-------------CCCCccceeeECCCC
Confidence 3456778999999994 45555678888887531 10 0111 244568889999 6
Q ss_pred CEEEEEe-CCcEEEEEcCCCcEEEEEeC----CCCCeEEEEEcCCC-eEEE----EEC-------------CCcEEEEeC
Q 004924 450 SHLFSAS-GGKISIFSLETFQTLATFAN----PPPIATYFILLPQD-LFAF----GFD-------------DSSILVHCP 506 (723)
Q Consensus 450 ~~l~s~s-dg~I~vwd~~~~~~~~~~~~----~~~~v~~l~~~p~~-~l~s----gs~-------------dg~I~iwd~ 506 (723)
+++++.. ++.|.+|+.. ++....... ....+..++++|+| .+++ |.. .+.|+.||.
T Consensus 98 ~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~ 176 (305)
T 3dr2_A 98 RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP 176 (305)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS
T ss_pred CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcC
Confidence 6554444 5789999986 553322211 11345679999999 6665 332 256888888
Q ss_pred CCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEcc
Q 004924 507 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 580 (723)
Q Consensus 507 ~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~d------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~sp 580 (723)
.+++..... .....+.++|+||++.|+++... +.|.+||+..+.......+. .... .....+++++
T Consensus 177 ~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~---~~~~---~~pdgi~~d~ 248 (305)
T 3dr2_A 177 DGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFA---SVPD---GLPDGFCVDR 248 (305)
T ss_dssp SSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEE---CCSS---SCCCSEEECT
T ss_pred CCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEE---ECCC---CCCCeEEECC
Confidence 777655433 34467889999999988877765 68999998764311111111 1111 3456789999
Q ss_pred CCCEEEEEcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEE
Q 004924 581 DQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 641 (723)
Q Consensus 581 dg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd 641 (723)
+|++.+++ .+.|.+||. .++.+..+..+ ..+.+++|+|+++.|+.++.++ ++.++
T Consensus 249 ~G~lwv~~-~~gv~~~~~-~g~~~~~~~~~---~~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 249 GGWLWSSS-GTGVCVFDS-DGQLLGHIPTP---GTASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp TSCEEECC-SSEEEEECT-TSCEEEEEECS---SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred CCCEEEec-CCcEEEECC-CCCEEEEEECC---CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 99955545 445999998 57777777542 2588999999999888887754 43333
No 226
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.10 E-value=2.4e-08 Score=102.91 Aligned_cols=222 Identities=13% Similarity=0.007 Sum_probs=145.7
Q ss_pred CCCCeEEEEEe--CC-EEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEE
Q 004924 438 PKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 512 (723)
Q Consensus 438 h~~~V~~v~~s--~~-~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~ 512 (723)
.........|+ ++ ++++.. ++.|..|+. +++ ...+..+...+..++++++| .+++...++.|.+|+.. ++..
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~ 119 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAH 119 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEE
Confidence 44556788898 66 455555 789999998 454 34555566778999999999 65555556789999986 6543
Q ss_pred EEEc---C-cCCcEEEEEEcCCCCEEEE----EeC-------------CCcEEEEeCCCCceeeceeeeeeecCCCCCCC
Q 004924 513 AKLK---G-HQNRITCLAYSLSLNVLVS----SGA-------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 571 (723)
Q Consensus 513 ~~l~---~-~~~~i~~l~~spdg~~l~s----~s~-------------dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~ 571 (723)
.... + ....+++++++|+|+..++ |.. .+.|..||..+++... +. .. .
T Consensus 120 ~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~------~~-~~----~ 188 (305)
T 3dr2_A 120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR------MA-DL----D 188 (305)
T ss_dssp EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE------EE-EE----S
T ss_pred EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE------Ee-cC----C
Confidence 3221 1 1234678999999998876 332 2467778876653211 11 11 4
Q ss_pred CeEEEEEccCCCEEEEE-cC------CcEEEEECCCCcee--EEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEEC
Q 004924 572 IVNHIQFHPDQIHLLSI-HE------GQIDVYEAPTLNHT--SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 642 (723)
Q Consensus 572 ~v~~l~~spdg~~l~~s-~d------g~I~vwd~~~~~~~--~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~ 642 (723)
....++|+||++.|+++ .. +.|++|++..+... ..+.. ........++++++|++. +++.+| |.+|+.
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~-~~~~~pdgi~~d~~G~lw-v~~~~g-v~~~~~ 265 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS-VPDGLPDGFCVDRGGWLW-SSSGTG-VCVFDS 265 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC-CSSSCCCSEEECTTSCEE-ECCSSE-EEEECT
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE-CCCCCCCeEEECCCCCEE-EecCCc-EEEECC
Confidence 56789999999987764 33 68999998754311 11211 113445678999999944 444444 999998
Q ss_pred CCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCc
Q 004924 643 STLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR 689 (723)
Q Consensus 643 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~ 689 (723)
.++.+..+... . . +.+++|+| +++.|..++.++.
T Consensus 266 -~g~~~~~~~~~--------~-~--~~~~~f~~-d~~~L~it~~~~l 299 (305)
T 3dr2_A 266 -DGQLLGHIPTP--------G-T--ASNCTFDQ-AQQRLFITGGPCL 299 (305)
T ss_dssp -TSCEEEEEECS--------S-C--CCEEEECT-TSCEEEEEETTEE
T ss_pred -CCCEEEEEECC--------C-c--eeEEEEeC-CCCEEEEEcCCeE
Confidence 56666666531 2 2 34899998 7888887777643
No 227
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.09 E-value=5.8e-09 Score=120.64 Aligned_cols=237 Identities=15% Similarity=0.136 Sum_probs=151.7
Q ss_pred CCCCCeEEEEEe--CCEEEEEe--C----CcEEEEEcCCCcEEEE-EeCCCCCeEEEEEcCCC-eEEEEECCC-------
Q 004924 437 DPKDSISCFALR--GSHLFSAS--G----GKISIFSLETFQTLAT-FANPPPIATYFILLPQD-LFAFGFDDS------- 499 (723)
Q Consensus 437 ~h~~~V~~v~~s--~~~l~s~s--d----g~I~vwd~~~~~~~~~-~~~~~~~v~~l~~~p~~-~l~sgs~dg------- 499 (723)
+|...+..++|| |+++|.+. . .+|++||+.+|+.+.. +... ....++|+ |+ .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCccccccc
Confidence 456678889999 88777543 2 4699999999986543 2211 12467899 99 888887774
Q ss_pred ------cEEEEeCCCCcE--EEEE--cC-cCCcEEEEEEcCCCCEEEEEeC----CCcEEEEeCCCCceeeceeeeeeec
Q 004924 500 ------SILVHCPCTKKT--KAKL--KG-HQNRITCLAYSLSLNVLVSSGA----DAQLCVWDAVGWKKLCSKFLHSFQT 564 (723)
Q Consensus 500 ------~I~iwd~~~~~~--~~~l--~~-~~~~i~~l~~spdg~~l~s~s~----dg~I~vwd~~~~~~~~~~~l~~~~~ 564 (723)
.|++|++.++.. ...+ .. |...+..+.|+|||++|+.... +..|+++|+.++.. ....+..
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~----~~~~l~~ 278 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA----PLLTVQG 278 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC----CCEEEEC
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC----ceEEEeC
Confidence 399999887642 3333 33 4456788999999998765443 24799999977521 1221222
Q ss_pred CCCCCCCCeEEEEEccCCCEEEE-E-c---CCcEEEEECCCCce--eEEecCCCCCCCeEEEEEeeCCcEEEEEeCCC--
Q 004924 565 GLVPETTIVNHIQFHPDQIHLLS-I-H---EGQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-- 635 (723)
Q Consensus 565 ~~~~~~~~v~~l~~spdg~~l~~-s-~---dg~I~vwd~~~~~~--~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg-- 635 (723)
.. ...... ++++|..|+. + . .+.|..+|+.++.. ...+.. |...+. .|++++++|+....++
T Consensus 279 ~~----~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~~--~~s~~g~~lv~~~~~~g~ 349 (693)
T 3iuj_A 279 DL----DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP--ERQQVL--TVHSGSGYLFAEYMVDAT 349 (693)
T ss_dssp SS----SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC--CCSSCE--EEEEETTEEEEEEEETTE
T ss_pred CC----CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec--CCCCEE--EEEEECCEEEEEEEECCe
Confidence 21 233343 6777776665 4 2 35799999987654 234443 233444 8999999888766543
Q ss_pred -cEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECC----CcEEEEecCCCce
Q 004924 636 -HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN----GRVHVIEPLESEV 700 (723)
Q Consensus 636 -~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D----g~v~iWd~~~~~~ 700 (723)
.|++|++..+. ...+... ... .+..+.++| ++..++....+ ++|+.||+.+++.
T Consensus 350 ~~l~~~d~~g~~-~~~l~~p-------~~~--~~~~~~~~~-d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 350 ARVEQFDYEGKR-VREVALP-------GLG--SVSGFNGKH-DDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEEEEECTTSCE-EEEECCS-------SSS--EEEECCCCT-TCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred eEEEEEECCCCe-eEEeecC-------CCc--eEEeeecCC-CCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 68999988554 3444321 012 233677788 55555444333 7999999987754
No 228
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.05 E-value=8.9e-09 Score=107.04 Aligned_cols=294 Identities=12% Similarity=0.086 Sum_probs=182.9
Q ss_pred EEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeee
Q 004924 339 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNME 418 (723)
Q Consensus 339 ~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~ 418 (723)
.+..++.++.+..|| .+ +..... .+. +...+.++...++|. +..++.+ +..+|.. |...
T Consensus 32 ~l~v~t~~~~l~~~d-~~----g~~~~~-~~~--~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~~------g~~~---- 90 (330)
T 3hxj_A 32 TIYLGSSNKNLYAIN-TD----GSVKWF-FKS--GEIIECRPSIGKDGT-IYFGSDK--VYAINPD------GTEK---- 90 (330)
T ss_dssp CEECSSTTTTTEEEC-TT----SCEEES-SCG--GGEEEECCEETTTTE-ECCSSCE--EEEECCC------GGGG----
T ss_pred eEEEEcCCCEEEEEC-CC----CcEEEE-Eec--CCCcccceEEecCCc-EEEecCc--EEEECCC------CcEE----
Confidence 456666778888888 53 332211 211 334556777777776 4444444 7666642 1111
Q ss_pred eEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEEC
Q 004924 419 SQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFD 497 (723)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~ 497 (723)
|.... ...........+..+..++ ++.+..+|.. ++.......+...+.++...+++.+..|+.
T Consensus 91 ---~~~~~-----------~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~ 155 (330)
T 3hxj_A 91 ---WRFDT-----------KKAIVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSN 155 (330)
T ss_dssp ---GGSCC----------------CCEEEETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECT
T ss_pred ---EEEEC-----------CCCcccCceEECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcC
Confidence 21111 1111112223366777777 8999999998 887777765555566677777776777888
Q ss_pred CCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEE
Q 004924 498 DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 577 (723)
Q Consensus 498 dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~ 577 (723)
++.|..+|.. ++....+......+.++...+++...+ ++ +.|..+| .+++.... ..... ..+.++.
T Consensus 156 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~-----~~~~~----~~~~~~~ 221 (330)
T 3hxj_A 156 DNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWN-----FYAGY----WTVTRPA 221 (330)
T ss_dssp TSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEE-----ECCSS----CCCSCCE
T ss_pred CCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEE-----EccCC----cceeceE
Confidence 8999999998 888777765566677777877887544 44 8899999 55432211 11111 4577888
Q ss_pred EccCCCEEEEEcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeeccccc
Q 004924 578 FHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA 657 (723)
Q Consensus 578 ~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~ 657 (723)
..++|...+++.++.+..+|. +++.+..+... ...+..+.+.+++ .|..++.+|.|+.+|. +++....+...
T Consensus 222 ~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~--~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~--- 293 (330)
T 3hxj_A 222 ISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTG--KRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETG--- 293 (330)
T ss_dssp ECTTSCEEEEETTTEEEEECT-TSCEEEEEECS--SCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECS---
T ss_pred ECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCC--CCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcC---
Confidence 899988777778888999985 56666555432 2233345555455 5777888889999996 67776665431
Q ss_pred CCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 658 QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 658 ~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
...+. ++...+ ++. |..++.+|.+++......+
T Consensus 294 -----~~~~~--~~~~d~-~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 294 -----SWIIA--TPVIDE-NGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp -----SCCCS--CCEECT-TCC-EEEECTTSCEEEEEC----
T ss_pred -----Ccccc--ceEEcC-CCE-EEEEcCCCeEEEEeccccc
Confidence 22233 556656 554 6668899999998776543
No 229
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.03 E-value=7.5e-12 Score=133.26 Aligned_cols=227 Identities=15% Similarity=0.049 Sum_probs=130.8
Q ss_pred CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCC-cEE-E
Q 004924 449 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN-RIT-C 524 (723)
Q Consensus 449 ~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~-~i~-~ 524 (723)
++.+++++ ||.|..||..+|+.+..+.. ..+.+..+..++ .+++++.||.|+.||..+|+.+..+..+.. .+. .
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 67888888 99999999999999988876 344444555677 777788999999999999987766653321 110 0
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCce
Q 004924 525 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH 603 (723)
Q Consensus 525 l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~ 603 (723)
..+. ++..+++++.|+.++.||.++|+...... .+ . ...++|++..+++ +.++.|+.||.++|+.
T Consensus 87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~-----~~-----~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLS-----SA-----F---ADSLSPSTSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp SCC------CCCCEEEEEEEEECCC-----------------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEec-----CC-----C---cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence 0111 34567888889999999999975432211 11 1 1344567777776 5889999999999987
Q ss_pred eEEecCCCCCCCeEEEEEeeCC---cEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCE
Q 004924 604 TSQLVPDKMDLPITYATYSCDG---KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 680 (723)
Q Consensus 604 ~~~~~~~~h~~~v~~l~~spdg---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~ 680 (723)
+..+.... ....+++++. ..+++++.||.|+.||..+|+.+..... ..++. ....+++ ++..
T Consensus 153 ~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~---------~~pv~-~~~~~~~-dg~~ 217 (369)
T 2hz6_A 153 RWNATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY---------ASPVV-AFYVWQR-EGLR 217 (369)
T ss_dssp CCEEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC---------SSCEE-EEEECTT-SSCE
T ss_pred EEeEeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC---------CCceE-EEEEecC-CceE
Confidence 66553211 1122333332 5677888999999999999998887653 12222 1334445 5533
Q ss_pred EEE--EECCCcEEEEecCCCc----eeeecCC
Q 004924 681 IAL--GLTNGRVHVIEPLESE----VEWGKLP 706 (723)
Q Consensus 681 las--~s~Dg~v~iWd~~~~~----~~w~~~~ 706 (723)
.+. ...++.++.+|..+|+ ..|....
T Consensus 218 ~v~~~~~~~~~l~~ld~~tG~~~~~~~W~~~~ 249 (369)
T 2hz6_A 218 KVMHINVAVETLRYLTFMSGEVGRITKWKYPF 249 (369)
T ss_dssp EECCEEEEHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred eccceeecccceeeeehhcCCcccceeeeecc
Confidence 210 1125578888888888 7887653
No 230
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.02 E-value=1e-08 Score=107.97 Aligned_cols=228 Identities=9% Similarity=-0.083 Sum_probs=145.1
Q ss_pred cEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEE----------CCCcEEEEeCCCCcEEEEEcCc-------CC
Q 004924 459 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF----------DDSSILVHCPCTKKTKAKLKGH-------QN 520 (723)
Q Consensus 459 ~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs----------~dg~I~iwd~~~~~~~~~l~~~-------~~ 520 (723)
+|.++|..+++.+.++.....+ .+.++||+ .++++. .++.|.+||+.+++.+..+... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999999999854445 79999999 777765 3678999999999999988533 12
Q ss_pred cEEEEEEcCCCCEEEEEeC--CCcEEE--EeCCCCceeeceeee----eeecCCC-----CCCCCeEEEEE---------
Q 004924 521 RITCLAYSLSLNVLVSSGA--DAQLCV--WDAVGWKKLCSKFLH----SFQTGLV-----PETTIVNHIQF--------- 578 (723)
Q Consensus 521 ~i~~l~~spdg~~l~s~s~--dg~I~v--wd~~~~~~~~~~~l~----~~~~~~~-----~~~~~v~~l~~--------- 578 (723)
....+.++|||++++++.. +..+.+ +|..+ ....++. ..+.+.. ...+.+..+..
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~ 201 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI 201 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCe
Confidence 3567899999999998875 456888 88865 1111100 0000000 00000101110
Q ss_pred -----------------ccCCCEEE-EEcCCcEEEEECCCCc--eeEEecCCC-----C---CCCeEEEEEeeCCcEEEE
Q 004924 579 -----------------HPDQIHLL-SIHEGQIDVYEAPTLN--HTSQLVPDK-----M---DLPITYATYSCDGKCIYV 630 (723)
Q Consensus 579 -----------------spdg~~l~-~s~dg~I~vwd~~~~~--~~~~~~~~~-----h---~~~v~~l~~spdg~~l~s 630 (723)
++++..++ ++. +.+.+.|..++. .+..+.... + ......++++||++.+++
T Consensus 202 v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV 280 (368)
T 1mda_H 202 VGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI 280 (368)
T ss_dssp CCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred EEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence 33333333 344 677777875432 222221100 0 011112689999998887
Q ss_pred EeC-C--------CcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCC-EEEEEE-CCCcEEEEecCCCc
Q 004924 631 SCK-S--------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGL-TNGRVHVIEPLESE 699 (723)
Q Consensus 631 gs~-d--------g~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~-~las~s-~Dg~v~iWd~~~~~ 699 (723)
+.. + +.+.++|..+++.+..+... . .+.+++|+| |++ .+++.. .+++|.|+|+.+++
T Consensus 281 ~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg---------~--~p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNG---------H--DSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EEEECSSCTTSCEEEEEEEESSSCCEEECCEEE---------E--EECEEEECC-SSSCEEEEEETTTTEEEEEESSSCE
T ss_pred EeccccCcccccCCCEEEEECCCCeEEEEEECC---------C--CcceEEECC-CCCEEEEEccCCCCeEEEEECCCCc
Confidence 643 2 35669999999998888642 1 244899999 776 667777 59999999999987
Q ss_pred eeeec
Q 004924 700 VEWGK 704 (723)
Q Consensus 700 ~~w~~ 704 (723)
..-..
T Consensus 349 vv~~I 353 (368)
T 1mda_H 349 DQSSV 353 (368)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 65433
No 231
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.02 E-value=1.4e-10 Score=123.41 Aligned_cols=187 Identities=15% Similarity=0.098 Sum_probs=108.1
Q ss_pred CC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecC-C
Q 004924 489 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG-L 566 (723)
Q Consensus 489 ~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~-~ 566 (723)
++ .+++++.||.|+.||..+|+.+..+.. +.+.+..+..++..+++++.|+.|+.||..+|+........ .... .
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~-~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT-IPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC-HHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc-Cccccc
Confidence 34 889999999999999999999988875 44555555667777888889999999999887543222111 0000 0
Q ss_pred CCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCC
Q 004924 567 VPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 645 (723)
Q Consensus 567 ~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~ 645 (723)
. .++ +..++ .+++ +.++.++.||..+|+.+..+... . ...++|++..+++++.|+.|+.||..+|
T Consensus 85 ~---sp~----~~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~--~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG 150 (369)
T 2hz6_A 85 A---SPC----RSSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSA--F----ADSLSPSTSLLYLGRTEYTITMYDTKTR 150 (369)
T ss_dssp T---CSC----C------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSS
T ss_pred c---Cce----EecCC-EEEEEeCCCEEEEEECCCCcEEEEecCC--C----cccccccCCEEEEEecCCEEEEEECCCC
Confidence 0 111 11233 4454 68899999999999987766432 1 2345678899999999999999999999
Q ss_pred cEEEEeecccccCCCCccCccceEEEEEecCCC---CEEEEEECCCcEEEEecCCCceeeecC
Q 004924 646 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEP---NRIALGLTNGRVHVIEPLESEVEWGKL 705 (723)
Q Consensus 646 ~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~---~~las~s~Dg~v~iWd~~~~~~~w~~~ 705 (723)
+.+..+..... . ..++.+ +. ..+++++.||.|+.||..+|+..|...
T Consensus 151 ~~~W~~~~~~~----------~--~~~~~~-~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 151 ELRWNATYFDY----------A--ASLPED-DVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp SCCCEEEEEEE----------C--CBCCCC-CTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred CEEEeEecccc----------c--CccccC-CccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 98777653211 1 122222 21 457778899999999999999999864
No 232
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.00 E-value=4.3e-09 Score=110.87 Aligned_cols=258 Identities=9% Similarity=-0.026 Sum_probs=159.6
Q ss_pred eEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEE----------CCCcEEEEeccCCcccccccceee
Q 004924 348 KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QTATHKLWKWQSNKQSLEEENVNM 417 (723)
Q Consensus 348 ~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s----------~dg~i~iWd~~~~~~~~g~~~~~~ 417 (723)
+|.++|..+ ......+... ..+ .+.+||||++++.+. .+++|.+||..+.+.
T Consensus 47 ~vsvID~~t---~~v~~~i~vG----~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v--------- 108 (368)
T 1mda_H 47 ENWVSCAGC---GVTLGHSLGA----FLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP--------- 108 (368)
T ss_dssp EEEEEETTT---TEEEEEEEEC----TTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE---------
T ss_pred eEEEEECCC---CeEEEEEeCC----CCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE---------
Confidence 778889874 2223333221 234 799999999988886 367888888764332
Q ss_pred eeEEEecCCCeeeeeccCCCC-----CCCeEEEEEe--CCEEEEEe---CCcEEE--EEcCCCcEEEEEeCCCCCeEEEE
Q 004924 418 ESQLYQPSSKLVMTNDIAADP-----KDSISCFALR--GSHLFSAS---GGKISI--FSLETFQTLATFANPPPIATYFI 485 (723)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~h-----~~~V~~v~~s--~~~l~s~s---dg~I~v--wd~~~~~~~~~~~~~~~~v~~l~ 485 (723)
+..+..++. ......++++ |++++++. +..+.+ +|+.+ +..+..... ..
T Consensus 109 ------------v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~ 169 (368)
T 1mda_H 109 ------------IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FH 169 (368)
T ss_dssp ------------EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CC
T ss_pred ------------EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eE
Confidence 221110000 1223467888 78888776 356888 89876 455542111 22
Q ss_pred EcCCC--eEEEEECCCcEEEEeCCC-----CcEEE----EEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 004924 486 LLPQD--LFAFGFDDSSILVHCPCT-----KKTKA----KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 554 (723)
Q Consensus 486 ~~p~~--~l~sgs~dg~I~iwd~~~-----~~~~~----~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~ 554 (723)
..|++ .+++.+.||.+.+.|+.+ ++... .+.....+. . .+++..++..+. +.+.+.|..++...
T Consensus 170 ~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~ 244 (368)
T 1mda_H 170 IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGAT 244 (368)
T ss_dssp CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCE
T ss_pred EccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcce
Confidence 34555 556667788888888876 33221 011112333 3 666666666666 99999998753211
Q ss_pred eceeeeeee------cCCCCCCCCeEEEEEccCCCEEEEE-c-C--------CcEEEEECCCCceeEEecCCCCCCCeEE
Q 004924 555 CSKFLHSFQ------TGLVPETTIVNHIQFHPDQIHLLSI-H-E--------GQIDVYEAPTLNHTSQLVPDKMDLPITY 618 (723)
Q Consensus 555 ~~~~l~~~~------~~~~~~~~~v~~l~~spdg~~l~~s-~-d--------g~I~vwd~~~~~~~~~~~~~~h~~~v~~ 618 (723)
....+. +. .+..+ .....++++|+++.++++ . . +.+.++|+.+++.+.++.. ......
T Consensus 245 v~~~~~-~~~~~~~~~~~~p--~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v---g~~p~g 318 (368)
T 1mda_H 245 MKAAID-GNESGRKADNFRS--AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN---GHDSDA 318 (368)
T ss_dssp EECCCC-SSCTHHHHTTEEE--CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE---EEEECE
T ss_pred EEEEEE-ecccccccccccc--CcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC---CCCcce
Confidence 101111 00 00000 122236899999988864 3 2 3677999999999888865 335789
Q ss_pred EEEeeCCcE-EEEEe-CCCcEEEEECCCCcEEEEeec
Q 004924 619 ATYSCDGKC-IYVSC-KSGHVKVFDTSTLELRCQINL 653 (723)
Q Consensus 619 l~~spdg~~-l~sgs-~dg~I~iwd~~~~~~~~~~~~ 653 (723)
++|+|||++ +++.. .++.|.++|+.+++.+.++..
T Consensus 319 i~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v 355 (368)
T 1mda_H 319 IIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp EEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred EEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC
Confidence 999999984 55555 589999999999999988864
No 233
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.98 E-value=2.1e-08 Score=105.33 Aligned_cols=270 Identities=10% Similarity=0.047 Sum_probs=161.9
Q ss_pred ccccCCCCCEEEEEeC--CCeEEEEeecccCCCCceeEEecCC-----CCCCCceEEEEEeCCCCEEEEEEC-----CCc
Q 004924 330 ESTSLPDADSAVCAKS--LEKSVNLKLQLINEPSECRTLLLPD-----NSFGGRVVRLIYSHSGDFLVALTQ-----TAT 397 (723)
Q Consensus 330 ~~~~spdg~~la~~s~--dg~v~iw~~~~~~~~~~~~~~~l~~-----~~h~~~V~~l~fspdg~~las~s~-----dg~ 397 (723)
....+|+|+.+++... ++.++||.+.+ +.... ++. .+|...+..++++++|+..++-.. ++.
T Consensus 21 ~va~~~~g~~~v~~~~~~~~~~~l~~~~~----g~~~~--~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 21 NITLTPDGRLFLSLHQFYQPEMQVAELTQ----DGLIP--FPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp EEEECTTSCEEEEECGGGCCSCSEEEEET----TEEEE--SCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred eEEECCCCCEEEEeCCCCCCceEEEEECC----CCeec--CCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 3448899998888642 34367777752 33321 221 235678999999999986555433 467
Q ss_pred EEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEE-----eCCcEEEEEcCCCcE
Q 004924 398 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA-----SGGKISIFSLETFQT 470 (723)
Q Consensus 398 i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~-----sdg~I~vwd~~~~~~ 470 (723)
|.+||..++.. . +.+...... ..+...+..++++ +..++.+ .++.|.+||+.+++.
T Consensus 95 i~~~d~~tg~~-----~-----~~~~~~~~~-------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~ 157 (343)
T 2qe8_A 95 LVAWDTLNNQL-----S-----RVIYLPPPI-------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA 157 (343)
T ss_dssp EEEEETTTTEE-----E-----EEEECCTTT-------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred EEEEECCCCeE-----E-----EEEECChhh-------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence 88888663321 1 112211000 0233456788888 4454443 247899999998888
Q ss_pred EEEEeCCCCCeE-EEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCC-cEEEEe
Q 004924 471 LATFANPPPIAT-YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-QLCVWD 547 (723)
Q Consensus 471 ~~~~~~~~~~v~-~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg-~I~vwd 547 (723)
.+.+.+|..... ...+.++| .+.+.+.++.+..|. ..++.++|+|+|+.|+++..++ .+..++
T Consensus 158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred EEEecCCCcccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 777655422110 13445577 777777788776553 2367899999999988887766 444444
Q ss_pred CC---CCceeeceeeeee-ecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEe
Q 004924 548 AV---GWKKLCSKFLHSF-QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 622 (723)
Q Consensus 548 ~~---~~~~~~~~~l~~~-~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~s 622 (723)
.. .+..........+ ..++. .....++++++|..+++. .++.|.+||..+++....... .+...+.+++|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~---g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~-~~~~~p~~va~~ 299 (343)
T 2qe8_A 224 SADLSNLQLTDAELGSKIERYSEK---PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD-EKLSWTDSFNFG 299 (343)
T ss_dssp HHHHTCTTCCHHHHHTTCEEEEEC---CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC-GGGSCEEEEEEC
T ss_pred HHHhcCCCCChhhhhcceEecccC---CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC-CceecCCeeEEC
Confidence 21 1100000000000 01121 345679999999888874 778999999866664333321 235678999999
Q ss_pred eCCcEEEEEeCCCcEEEE
Q 004924 623 CDGKCIYVSCKSGHVKVF 640 (723)
Q Consensus 623 pdg~~l~sgs~dg~I~iw 640 (723)
+++.++++.+..+.+.+|
T Consensus 300 ~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 300 SDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp TTSCEEEEECCGGGSGGG
T ss_pred CCCcEEEEeCcccccccc
Confidence 998887777655544433
No 234
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.97 E-value=2.1e-07 Score=98.54 Aligned_cols=227 Identities=16% Similarity=0.154 Sum_probs=144.5
Q ss_pred CCEEEEEe--CCcEEEEEcCCC----cEEEEEe------C-CCCCeEEEEEcCCC-eEEEEECC------CcEEEEeCCC
Q 004924 449 GSHLFSAS--GGKISIFSLETF----QTLATFA------N-PPPIATYFILLPQD-LFAFGFDD------SSILVHCPCT 508 (723)
Q Consensus 449 ~~~l~s~s--dg~I~vwd~~~~----~~~~~~~------~-~~~~v~~l~~~p~~-~l~sgs~d------g~I~iwd~~~ 508 (723)
+++|++.+ ++.|.|+|+.+. +..++++ . .......+...|+| ++ ++..+ |.|.++|..+
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~V-s~~g~~~g~~~g~v~vlD~~T 173 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYI-SALGNEEGEGPGGILMLDHYS 173 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEE-EEEEETTSCSCCEEEEECTTT
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEE-EcCCCcCCCCCCeEEEEECCC
Confidence 56777766 789999999765 5666663 1 11234567888999 44 33333 6899999999
Q ss_pred CcEEEEEcCcC---CcEEEEEEcCCCCEEEEEe-------------------CCCcEEEEeCCCCceeeceeeeeeecCC
Q 004924 509 KKTKAKLKGHQ---NRITCLAYSLSLNVLVSSG-------------------ADAQLCVWDAVGWKKLCSKFLHSFQTGL 566 (723)
Q Consensus 509 ~~~~~~l~~~~---~~i~~l~~spdg~~l~s~s-------------------~dg~I~vwd~~~~~~~~~~~l~~~~~~~ 566 (723)
++.+..+.... .--..+-|+|+++.+++.. .+.+|.+||+.+++. ++++..+.
T Consensus 174 ~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~-----~~tI~vg~ 248 (462)
T 2ece_A 174 FEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR-----IHSLTLGE 248 (462)
T ss_dssp CCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE-----EEEEESCT
T ss_pred CeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE-----eeEEecCC
Confidence 99999886322 2234678899999888874 368999999998533 33333321
Q ss_pred CCCCCCeEEEEE--ccCCCEEEE-E------cCCcEEEEECCCCce--eEEecCCCC----------------CCCeEEE
Q 004924 567 VPETTIVNHIQF--HPDQIHLLS-I------HEGQIDVYEAPTLNH--TSQLVPDKM----------------DLPITYA 619 (723)
Q Consensus 567 ~~~~~~v~~l~~--spdg~~l~~-s------~dg~I~vwd~~~~~~--~~~~~~~~h----------------~~~v~~l 619 (723)
.. .....+.| +|+++++++ + .+++|.+|....++. .+.+..... ......+
T Consensus 249 ~g--~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I 326 (462)
T 2ece_A 249 EN--RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI 326 (462)
T ss_dssp TE--EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred CC--CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence 10 23445655 999998887 3 345787766554431 111100000 2456789
Q ss_pred EEeeCCcEEEEEeC-CCcEEEEECCC---CcEEEEeeccccc-----CCCCccCccceEEEEEecCCCCEEEEEE
Q 004924 620 TYSCDGKCIYVSCK-SGHVKVFDTST---LELRCQINLTAYA-----QPGTISLELYPLVIAAHPLEPNRIALGL 685 (723)
Q Consensus 620 ~~spdg~~l~sgs~-dg~I~iwd~~~---~~~~~~~~~~~~~-----~~g~~~~~v~~~~v~~sp~d~~~las~s 685 (723)
.+||||++|+++.. .+.|.+||+.. .+++..+...... +.|. ........++++| ||++|.++.
T Consensus 327 ~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~-~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 327 DISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH-KLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp EECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC-CCCSCCCCEEECT-TSSEEEEEC
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc-cCCCCCCEEEEcC-CCCEEEEEc
Confidence 99999999998876 58999999863 3455544431100 0000 0001244789999 899888887
No 235
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.96 E-value=3.6e-07 Score=96.74 Aligned_cols=237 Identities=14% Similarity=0.100 Sum_probs=146.3
Q ss_pred e--CCCCEEEEEEC-CCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-C
Q 004924 383 S--HSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-G 457 (723)
Q Consensus 383 s--pdg~~las~s~-dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-d 457 (723)
+ +++++|+..+. +++|.|.|+.+... .-+.. +..++ .++.. . .....-..+... +..++++. +
T Consensus 90 ~~~~~r~~l~v~~l~s~~I~viD~~t~p~-~p~~~-----k~ie~--~~~~~--~--~g~s~Ph~~~~~pdGi~Vs~~g~ 157 (462)
T 2ece_A 90 KPNIERRFLIVPGLRSSRIYIIDTKPNPR-EPKII-----KVIEP--EEVKK--V--SGYSRLHTVHCGPDAIYISALGN 157 (462)
T ss_dssp CTTCCSCEEEEEBTTTCCEEEEECCSCTT-SCEEE-----EEECH--HHHHH--H--HCEEEEEEEEECSSCEEEEEEEE
T ss_pred CCCccCCEEEEccCCCCeEEEEECCCCCC-Cceee-----eeech--hhccc--c--cCCCcccceeECCCeEEEEcCCC
Confidence 7 88888877655 78999999864311 00000 01100 00000 0 001122334445 33555544 4
Q ss_pred ------CcEEEEEcCCCcEEEEEeCCC---CCeEEEEEcCCC-eEEEEE-------------------CCCcEEEEeCCC
Q 004924 458 ------GKISIFSLETFQTLATFANPP---PIATYFILLPQD-LFAFGF-------------------DDSSILVHCPCT 508 (723)
Q Consensus 458 ------g~I~vwd~~~~~~~~~~~~~~---~~v~~l~~~p~~-~l~sgs-------------------~dg~I~iwd~~~ 508 (723)
|.|.++|..+++.+.++.... .--..+.|+|++ .+++.. .+.+|.+||+.+
T Consensus 158 ~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~ 237 (462)
T 2ece_A 158 EEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK 237 (462)
T ss_dssp TTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT
T ss_pred cCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC
Confidence 689999999999999987321 123457889999 777764 368999999999
Q ss_pred CcEEEEEcCc-C-CcEEEEEE--cCCCCEEEEEe------CCCcEEEEeCCCCceeeceeeeeeecCC----CC------
Q 004924 509 KKTKAKLKGH-Q-NRITCLAY--SLSLNVLVSSG------ADAQLCVWDAVGWKKLCSKFLHSFQTGL----VP------ 568 (723)
Q Consensus 509 ~~~~~~l~~~-~-~~i~~l~~--spdg~~l~s~s------~dg~I~vwd~~~~~~~~~~~l~~~~~~~----~~------ 568 (723)
++.+.++... . .....+.| +|+++++.+++ .+++|.+|..+.|.......+. +.... .+
T Consensus 238 ~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vId-i~~~~v~~~lp~~~~~f 316 (462)
T 2ece_A 238 RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIE-IPAEPLEGNLPEILKPF 316 (462)
T ss_dssp TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEE-ECCEECCSSCCGGGGGG
T ss_pred CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEe-CCCcccccccccccccc
Confidence 9888877642 1 23445555 99999987776 4568887776654332222221 11100 00
Q ss_pred --CCCCeEEEEEccCCCEEEEE--cCCcEEEEECCC---CceeEEecCCCC------------CCCeEEEEEeeCCcEEE
Q 004924 569 --ETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPT---LNHTSQLVPDKM------------DLPITYATYSCDGKCIY 629 (723)
Q Consensus 569 --~~~~v~~l~~spdg~~l~~s--~dg~I~vwd~~~---~~~~~~~~~~~h------------~~~v~~l~~spdg~~l~ 629 (723)
.......+.+||||++|+++ ..+.|.+||+.. .+.+..+..++. ......++++|||++|+
T Consensus 317 ~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~Ly 396 (462)
T 2ece_A 317 KAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVY 396 (462)
T ss_dssp TEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEE
T ss_pred ccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEE
Confidence 00356789999999999986 567999999852 355555544211 01357899999999999
Q ss_pred EEe
Q 004924 630 VSC 632 (723)
Q Consensus 630 sgs 632 (723)
++.
T Consensus 397 VaN 399 (462)
T 2ece_A 397 VTN 399 (462)
T ss_dssp EEC
T ss_pred EEc
Confidence 987
No 236
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.93 E-value=5.3e-08 Score=106.64 Aligned_cols=239 Identities=9% Similarity=0.030 Sum_probs=160.8
Q ss_pred EEEEEe-----CCEEEEEe--CCcEEEEEcCCCcEEEEEeCC-CCCeEEEEE-c-CCC-eEEEEE---------------
Q 004924 443 SCFALR-----GSHLFSAS--GGKISIFSLETFQTLATFANP-PPIATYFIL-L-PQD-LFAFGF--------------- 496 (723)
Q Consensus 443 ~~v~~s-----~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~-~~~v~~l~~-~-p~~-~l~sgs--------------- 496 (723)
..+++. |++++.+. ++.|.+.|+.+.++.+.+.-. ......+++ + |++ ++++++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~ 169 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED 169 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccc
Confidence 456663 67777776 578999999999998866532 345778887 5 888 777774
Q ss_pred ---CCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCC--------------------------------
Q 004924 497 ---DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-------------------------------- 541 (723)
Q Consensus 497 ---~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg-------------------------------- 541 (723)
.++.+.++|..+.+....+.--. ....++++|+|+++++.+.+.
T Consensus 170 ~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G 248 (595)
T 1fwx_A 170 VANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 248 (595)
T ss_dssp GGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred ccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence 24579999999998887775322 345678999999998888553
Q ss_pred ------cEEEEeCCCCceeecee-eeeeecCCCCCCCCeEEEEEccCCCEEEEE--cCCcEEEEECCCCc----------
Q 004924 542 ------QLCVWDAVGWKKLCSKF-LHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLN---------- 602 (723)
Q Consensus 542 ------~I~vwd~~~~~~~~~~~-l~~~~~~~~~~~~~v~~l~~spdg~~l~~s--~dg~I~vwd~~~~~---------- 602 (723)
.|.|.|..+.+ ... +..++.+ ....++.++|||++++++ .+.+|.++|+.+.+
T Consensus 249 k~~~i~~V~VID~~~~~---~~~~~~~Ipvg-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~ 320 (595)
T 1fwx_A 249 DYQELNGVKVVDGRKEA---SSLFTRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR 320 (595)
T ss_dssp CSEEETTEEEEECSGGG---CCSSEEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGG
T ss_pred CeeEECcEEEEeCcccC---CceeEEEEecC-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcc
Confidence 35666665511 011 2223333 346689999999999985 67899999998653
Q ss_pred --eeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCC----------CcEEEEeecccccCCCCccCccceEE
Q 004924 603 --HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST----------LELRCQINLTAYAQPGTISLELYPLV 670 (723)
Q Consensus 603 --~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~----------~~~~~~~~~~~~~~~g~~~~~v~~~~ 670 (723)
.+..... ......++|+|+|...++..-|+.|.+||+.+ .+.+.++..+. ..|| .. ...+
T Consensus 321 ~~v~~~v~v---G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y--qpGh-~~--~~~g 392 (595)
T 1fwx_A 321 SAVVAEPEL---GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY--QPGH-LK--TVMG 392 (595)
T ss_dssp GGEEECCBC---CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS--CEEE-EE--ETTT
T ss_pred cceEEEcCC---CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccc--cccc-ce--eccc
Confidence 2333322 56688999999994344566789999999987 45566665321 1121 00 1113
Q ss_pred EEEecCCCCEEEEEEC---CCc----------EEEEecCCCc
Q 004924 671 IAAHPLEPNRIALGLT---NGR----------VHVIEPLESE 699 (723)
Q Consensus 671 v~~sp~d~~~las~s~---Dg~----------v~iWd~~~~~ 699 (723)
...+| ||++|+++.. |.. -.++|+..++
T Consensus 393 ~t~~~-DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 393 ETLDA-TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp TSTTC-CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred eEeCC-CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 35578 8999888753 432 1788885554
No 237
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.91 E-value=3.8e-07 Score=104.59 Aligned_cols=290 Identities=12% Similarity=0.082 Sum_probs=177.7
Q ss_pred CCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCC-CCCe-EEEEEeCCEEEEEe-CCcEEE
Q 004924 386 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADP-KDSI-SCFALRGSHLFSAS-GGKISI 462 (723)
Q Consensus 386 g~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V-~~v~~s~~~l~s~s-dg~I~v 462 (723)
+..++.++.++.|..+|..+++. +|......-..... .. ...+ ..+++.+..++.++ |+.|..
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~------------~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~v~~~dg~l~a 131 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKE------------LWRYDPEVAKVKAR--TSCCDAVNRGVALWGDKVYVGTLDGRLIA 131 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCE------------EEEECCCCCGGGGG--GCTTCSCCCCCEEEBTEEEEECTTSEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChh------------ceEECCCCCccccc--cccccCCccceEEECCEEEEEcCCCEEEE
Confidence 44567777788888888775432 35433221100000 00 0011 12334566777777 999999
Q ss_pred EEcCCCcEEEEEeCCC----CCeEE-EEEcCCCeEEEEEC------CCcEEEEeCCCCcEEEEEcCcC------------
Q 004924 463 FSLETFQTLATFANPP----PIATY-FILLPQDLFAFGFD------DSSILVHCPCTKKTKAKLKGHQ------------ 519 (723)
Q Consensus 463 wd~~~~~~~~~~~~~~----~~v~~-l~~~p~~~l~sgs~------dg~I~iwd~~~~~~~~~l~~~~------------ 519 (723)
+|..+|+.+..+.... ..+.+ ..+ .++.++++.. +|.|..+|..+|+.+..+....
T Consensus 132 lD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~ 210 (668)
T 1kv9_A 132 LDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPEL 210 (668)
T ss_dssp EETTTCCEEEEEECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHH
T ss_pred EECCCCCEeeeeccCCCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccc
Confidence 9999999988876421 11111 111 1445555543 5899999999999988775210
Q ss_pred -------------------CcEEEEEEcCCCCEEEEEeCCC-------------------cEEEEeCCCCceeeceeeee
Q 004924 520 -------------------NRITCLAYSLSLNVLVSSGADA-------------------QLCVWDAVGWKKLCSKFLHS 561 (723)
Q Consensus 520 -------------------~~i~~l~~spdg~~l~s~s~dg-------------------~I~vwd~~~~~~~~~~~l~~ 561 (723)
.....++++|++..++.++.++ .|..+|.++|+........
T Consensus 211 ~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~- 289 (668)
T 1kv9_A 211 REAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVT- 289 (668)
T ss_dssp HHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS-
T ss_pred ccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecC-
Confidence 0112467888888888888766 3999999998754433221
Q ss_pred eecCCCC----CCCCeEEEEEccCCC---EEEE-EcCCcEEEEECCCCceeEEecCCCC----------CCC--------
Q 004924 562 FQTGLVP----ETTIVNHIQFHPDQI---HLLS-IHEGQIDVYEAPTLNHTSQLVPDKM----------DLP-------- 615 (723)
Q Consensus 562 ~~~~~~~----~~~~v~~l~~spdg~---~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h----------~~~-------- 615 (723)
.|.. ...+.....+..+|+ .++. +.+|.++++|..+|+.+........ ..+
T Consensus 290 ---~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~ 366 (668)
T 1kv9_A 290 ---PGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRY 366 (668)
T ss_dssp ---TTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTC
T ss_pred ---CCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccc
Confidence 1110 002233333344665 4555 5899999999999998744322110 000
Q ss_pred ----------------eEEEEEeeCCcEEEEEe------------------------------------CCCcEEEEECC
Q 004924 616 ----------------ITYATYSCDGKCIYVSC------------------------------------KSGHVKVFDTS 643 (723)
Q Consensus 616 ----------------v~~l~~spdg~~l~sgs------------------------------------~dg~I~iwd~~ 643 (723)
-..++++|+...+++.. .+|.|+.||..
T Consensus 367 ~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~ 446 (668)
T 1kv9_A 367 EKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPV 446 (668)
T ss_dssp SSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETT
T ss_pred cCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCC
Confidence 01267888776665421 24889999999
Q ss_pred CCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCceeeecCC
Q 004924 644 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLP 706 (723)
Q Consensus 644 ~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~w~~~~ 706 (723)
+|+.+....... ... ...... .+.++++++.||.|+.||..+++..|....
T Consensus 447 tG~~~W~~~~~~---------~~~--~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 447 KQKAAWKVPYPT---------HWN--GGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp TTEEEEEEEESS---------SCC--CCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCcEEEEccCCC---------CCc--CceeEe-CCCEEEEECCcccchhhhhhcChhheEecC
Confidence 999988775321 112 122333 567899999999999999999999998854
No 238
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.90 E-value=3.9e-06 Score=84.30 Aligned_cols=198 Identities=11% Similarity=-0.036 Sum_probs=129.5
Q ss_pred CeEEEEEe--CCEEEEEe--CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEE-EEECCCcEEEEeCCCCcEEEE
Q 004924 441 SISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCTKKTKAK 514 (723)
Q Consensus 441 ~V~~v~~s--~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~-sgs~dg~I~iwd~~~~~~~~~ 514 (723)
.+.+++|+ ++.|+.+. ++.|.+++...+.....+.........+++++++ .++ +-...+.|.+++.+.......
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 45688888 56666666 6899999997655443333333567899999976 444 445567899999875433222
Q ss_pred EcCcCCcEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE--c
Q 004924 515 LKGHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H 589 (723)
Q Consensus 515 l~~~~~~i~~l~~spdg~~l~s~s~---dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s--~ 589 (723)
..........++++|++..|..+.. .+.|..+++.... ...+..... .....++++|++..|+.+ .
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~------~~~~~~~~~---~~P~gia~d~~~~~lyv~d~~ 187 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN------RRILAQDNL---GLPNGLTFDAFSSQLCWVDAG 187 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC------CEEEECTTC---SCEEEEEEETTTTEEEEEETT
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC------cEEEEECCC---CCCcEEEEcCCCCEEEEEECC
Confidence 3322246789999997666655554 3688888886521 111111111 457899999998777764 5
Q ss_pred CCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEe-CCCcEEEEECCCCcEEEEee
Q 004924 590 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQIN 652 (723)
Q Consensus 590 dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~ 652 (723)
.+.|.++|............ ......++.. +..|+.+. .++.|..+|..+++.+..+.
T Consensus 188 ~~~I~~~~~~g~~~~~~~~~---~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLEG---LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp TTEEEEEETTEEEEEEEEEC---CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CCEEEEEecCCCceEEEecC---CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 67999999975443333321 3344566654 45555544 56899999999999888875
No 239
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.83 E-value=9.1e-07 Score=101.39 Aligned_cols=291 Identities=13% Similarity=0.097 Sum_probs=174.9
Q ss_pred CCCEEEEEeCCCeEEEEeecccCCCCcee-EEecCCCC-----CC-Cce-EEEEEeCCCCEEEEEECCCcEEEEeccCCc
Q 004924 336 DADSAVCAKSLEKSVNLKLQLINEPSECR-TLLLPDNS-----FG-GRV-VRLIYSHSGDFLVALTQTATHKLWKWQSNK 407 (723)
Q Consensus 336 dg~~la~~s~dg~v~iw~~~~~~~~~~~~-~~~l~~~~-----h~-~~V-~~l~fspdg~~las~s~dg~i~iWd~~~~~ 407 (723)
.+..+++++.++.|.-+|..+ ++.+ .+...... .. ..+ ..+++ ++..++.++.|+.+..+|..+++
T Consensus 65 ~~g~vyv~~~~~~v~AlD~~t----G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~ 138 (668)
T 1kv9_A 65 HDGVIYTSMSWSRVIAVDAAS----GKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGK 138 (668)
T ss_dssp ETTEEEEEEGGGEEEEEETTT----CCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCC
T ss_pred ECCEEEEECCCCeEEEEECCC----ChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCC
Confidence 345566777778887777763 2222 12111100 00 000 11222 34567888889999999987543
Q ss_pred ccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-------CCcEEEEEcCCCcEEEEEeCCC--
Q 004924 408 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-------GGKISIFSLETFQTLATFANPP-- 478 (723)
Q Consensus 408 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-------dg~I~vwd~~~~~~~~~~~~~~-- 478 (723)
. +|............ ....+ ...+..++++. +|.|..+|..+|+.+..+....
T Consensus 139 ~------------~W~~~~~~~~~~~~--~~~~P----~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~ 200 (668)
T 1kv9_A 139 A------------IWSQQTTDPAKPYS--ITGAP----RVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGD 200 (668)
T ss_dssp E------------EEEEECSCTTSSCB--CCSCC----EEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCC
T ss_pred E------------eeeeccCCCCCcce--ecCCC----EEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCC
Confidence 3 34432210000000 01111 12345555543 3789999999999998875310
Q ss_pred -C----------------------------CeEEEEEcCCC-eEEEEECCC-------------------cEEEEeCCCC
Q 004924 479 -P----------------------------IATYFILLPQD-LFAFGFDDS-------------------SILVHCPCTK 509 (723)
Q Consensus 479 -~----------------------------~v~~l~~~p~~-~l~sgs~dg-------------------~I~iwd~~~~ 509 (723)
. ....+++.|++ .++.++.++ .|..+|.++|
T Consensus 201 p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG 280 (668)
T 1kv9_A 201 PALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG 280 (668)
T ss_dssp TTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC
T ss_pred CCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCC
Confidence 0 01246788877 888877665 3999999999
Q ss_pred cEEEEEcC--cC-------CcEEEEEEcCCCC---EEEEEeCCCcEEEEeCCCCceeeceeeee------ee--cCC---
Q 004924 510 KTKAKLKG--HQ-------NRITCLAYSLSLN---VLVSSGADAQLCVWDAVGWKKLCSKFLHS------FQ--TGL--- 566 (723)
Q Consensus 510 ~~~~~l~~--~~-------~~i~~l~~spdg~---~l~s~s~dg~I~vwd~~~~~~~~~~~l~~------~~--~~~--- 566 (723)
+.+..++. |. .+.....+..+|+ .++.++.+|.++++|..+|+.+....... +. .+.
T Consensus 281 ~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~ 360 (668)
T 1kv9_A 281 KLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVE 360 (668)
T ss_dssp CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEE
T ss_pred ceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccc
Confidence 99887764 22 2333333334665 68889999999999999987653222110 00 000
Q ss_pred ------C-------C---CCCCeEEEEEccCCCEEEEE-------------------------------------cCCcE
Q 004924 567 ------V-------P---ETTIVNHIQFHPDQIHLLSI-------------------------------------HEGQI 593 (723)
Q Consensus 567 ------~-------~---~~~~v~~l~~spdg~~l~~s-------------------------------------~dg~I 593 (723)
. + ....-..++++|+...+++. .+|.|
T Consensus 361 ~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l 440 (668)
T 1kv9_A 361 APGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGAL 440 (668)
T ss_dssp CTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEE
T ss_pred cccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceE
Confidence 0 0 00001136788877666541 12779
Q ss_pred EEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeec
Q 004924 594 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 653 (723)
Q Consensus 594 ~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 653 (723)
+.||+.+++.+-+... ..+.....+...+.++++|+.||.++.||.++|+.+..+..
T Consensus 441 ~A~D~~tG~~~W~~~~---~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 441 LAWDPVKQKAAWKVPY---PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp EEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEeCCCCcEEEEccC---CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence 9999999998776643 23334445666788999999999999999999999988875
No 240
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.82 E-value=1.7e-06 Score=97.09 Aligned_cols=243 Identities=11% Similarity=0.047 Sum_probs=155.0
Q ss_pred EEeCCEEEEEe-CCcEEEEEcCCCcEEEEEeCCC----CCeEE-EEEcCCCeEEEEEC------CCcEEEEeCCCCcEEE
Q 004924 446 ALRGSHLFSAS-GGKISIFSLETFQTLATFANPP----PIATY-FILLPQDLFAFGFD------DSSILVHCPCTKKTKA 513 (723)
Q Consensus 446 ~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~----~~v~~-l~~~p~~~l~sgs~------dg~I~iwd~~~~~~~~ 513 (723)
+..+..++.++ |+.+..+|..+|+.+....... ..+.+ ... .++.+++++. ++.|..+|..+|+.+.
T Consensus 112 ~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 190 (571)
T 2ad6_A 112 AYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKDTVLMGCSGAELGVRGAVNAFDLKTGELKW 190 (571)
T ss_dssp EEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred EEECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE-ECCEEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence 34567777777 9999999999999988775322 01111 111 1445555554 7899999999999987
Q ss_pred EEcCcCCc-------------------------------------E-EEEEEcCCCCEEEEEeCC---------------
Q 004924 514 KLKGHQNR-------------------------------------I-TCLAYSLSLNVLVSSGAD--------------- 540 (723)
Q Consensus 514 ~l~~~~~~-------------------------------------i-~~l~~spdg~~l~s~s~d--------------- 540 (723)
.+...... + ..+++.++...++.++.+
T Consensus 191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y 270 (571)
T 2ad6_A 191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW 270 (571)
T ss_dssp EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCcee
Confidence 76532110 0 135666766677666532
Q ss_pred -CcEEEEeCCCCceeeceeeeeeecCCC-----CCCCCeEEEEEccCCC---EEEE-EcCCcEEEEECCCCceeEEecCC
Q 004924 541 -AQLCVWDAVGWKKLCSKFLHSFQTGLV-----PETTIVNHIQFHPDQI---HLLS-IHEGQIDVYEAPTLNHTSQLVPD 610 (723)
Q Consensus 541 -g~I~vwd~~~~~~~~~~~l~~~~~~~~-----~~~~~v~~l~~spdg~---~l~~-s~dg~I~vwd~~~~~~~~~~~~~ 610 (723)
+.|..+|.++|+........ .|. ....++ -+...++|+ .++. +.+|.++++|..+|+.+..+...
T Consensus 271 ~~~v~Ald~~tG~~~W~~~~~----~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~ 345 (571)
T 2ad6_A 271 TMTIWGRDLDTGMAKWGYQKT----PHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVD 345 (571)
T ss_dssp TTEEEEEETTTCCEEEEEESS----TTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred EEEEEEEecCCCcEEEEecCC----CCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeeccc
Confidence 25899999998754432221 110 000122 233335774 4444 47899999999999987766432
Q ss_pred CC-----------CCCe--------------------------EEEEEeeCCcEEEEEe---------------------
Q 004924 611 KM-----------DLPI--------------------------TYATYSCDGKCIYVSC--------------------- 632 (723)
Q Consensus 611 ~h-----------~~~v--------------------------~~l~~spdg~~l~sgs--------------------- 632 (723)
.. ..++ ..++++|+...+++.+
T Consensus 346 ~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~ 425 (571)
T 2ad6_A 346 PAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFV 425 (571)
T ss_dssp TTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCC
T ss_pred CCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccc
Confidence 10 0111 2467888877777654
Q ss_pred ----------------CCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecC
Q 004924 633 ----------------KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 633 ----------------~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~ 696 (723)
.+|.|+.||..+|+.+.++.... .+. ...... .+..++.++.||.|+.||..
T Consensus 426 g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~---------~~~--~~~~~t-~gg~v~~g~~dg~l~a~D~~ 493 (571)
T 2ad6_A 426 GATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF---------AAW--GGTLYT-KGGLVWYATLDGYLKALDNK 493 (571)
T ss_dssp CEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS---------CCC--SBCEEE-TTTEEEEECTTSEEEEEETT
T ss_pred cccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC---------Ccc--ceeEEE-CCCEEEEEcCCCeEEEEECC
Confidence 34789999999999888875321 111 111122 35677889999999999999
Q ss_pred CCceeeecCC
Q 004924 697 ESEVEWGKLP 706 (723)
Q Consensus 697 ~~~~~w~~~~ 706 (723)
+++..|....
T Consensus 494 tG~~lw~~~~ 503 (571)
T 2ad6_A 494 DGKELWNFKM 503 (571)
T ss_dssp TCCEEEEEEC
T ss_pred CCCEEEEEeC
Confidence 9999998854
No 241
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.81 E-value=3e-05 Score=90.93 Aligned_cols=324 Identities=9% Similarity=-0.006 Sum_probs=197.0
Q ss_pred CCCEEEEEeCCCeEEEEeecccCCCCceeEEecCC----CCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCccccc
Q 004924 336 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD----NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 411 (723)
Q Consensus 336 dg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~----~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g 411 (723)
+|. +..++.++.+..|+.. .+.+..+.... ......|.++...++|.. ..|+.+ -+.+|+..+...
T Consensus 225 ~g~-lwigt~~~Gl~~~~~~----~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~--- 294 (795)
T 4a2l_A 225 PTR-IWVATEGAGLFLINPK----TKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSF--- 294 (795)
T ss_dssp TTE-EEEEEBSSCEEEEETT----TTEEEEECCCTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEE---
T ss_pred CCC-EEEEECCCCeEEEeCC----CCeEEEeecCCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeE---
Confidence 344 4445545457788865 34454443210 112467999999999985 445555 577787553221
Q ss_pred ccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCcEEEEEeC-------CCCCeE
Q 004924 412 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFAN-------PPPIAT 482 (723)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-dg~I~vwd~~~~~~~~~~~~-------~~~~v~ 482 (723)
..+...... ...-....|.++... ...+..|+ ++.|..|+..++... .+.. ....|.
T Consensus 295 --------~~~~~~~~~-----~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~ 360 (795)
T 4a2l_A 295 --------ASYSSNPVE-----NGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVS 360 (795)
T ss_dssp --------EEECCCTTS-----TTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEE
T ss_pred --------EEEecCCCC-----CCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeE
Confidence 011100000 000134678999888 55566677 788999987655432 2221 245689
Q ss_pred EEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEcC--------cCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 004924 483 YFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG--------HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 554 (723)
Q Consensus 483 ~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~--------~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~ 554 (723)
++...++|.+..|+.++-|..||..+++....... ....|.++...++|+.|..|+.++.|..||..++...
T Consensus 361 ~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~ 440 (795)
T 4a2l_A 361 CIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE 440 (795)
T ss_dssp EEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE
T ss_pred EEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE
Confidence 99888888777788888899999887765433211 2357899999989885677888788999999875421
Q ss_pred eceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecC----CCCCCCeEEEEEeeCCcEEEE
Q 004924 555 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP----DKMDLPITYATYSCDGKCIYV 630 (723)
Q Consensus 555 ~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~----~~h~~~v~~l~~spdg~~l~s 630 (723)
...... ..... ..|.++...++|...+++. +.+.+||..+++....... ......|.++...++|...+.
T Consensus 441 ~~~~~~--~~l~~---~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig 514 (795)
T 4a2l_A 441 NFNQRN--SQLVN---ENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG 514 (795)
T ss_dssp EECTTT--SCCSC---SCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEE
T ss_pred EeecCC--CCcCC---CeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEE
Confidence 110000 00111 5799999999998777665 6699999887654322111 112467899999888886665
Q ss_pred EeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 631 SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 631 gs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
+. +-|..|+..+++. .+.... ...+-.... +.++...+ ++.+.++ +.+ .|..||..+++
T Consensus 515 t~--~Gl~~~~~~~~~~--~~~~~~-~~~~l~~~~--i~~i~~d~-~g~lWig-T~~-Gl~~~d~~~~~ 573 (795)
T 4a2l_A 515 GE--EGLSVFKQEGLDI--QKASIL-PVSNVTKLF--TNCIYEAS-NGIIWVG-TRE-GFYCFNEKDKQ 573 (795)
T ss_dssp ES--SCEEEEEEETTEE--EECCCS-CSCGGGGSC--EEEEEECT-TSCEEEE-ESS-CEEEEETTTTE
T ss_pred eC--CceEEEeCCCCeE--EEecCC-CCCCCCCCe--eEEEEECC-CCCEEEE-eCC-CceeECCCCCc
Confidence 54 4588999887765 332100 000111223 44888877 6765554 344 68889887664
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.79 E-value=3.7e-08 Score=102.32 Aligned_cols=266 Identities=12% Similarity=0.084 Sum_probs=166.5
Q ss_pred EEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEeCC
Q 004924 380 LIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGG 458 (723)
Q Consensus 380 l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~sdg 458 (723)
..+..+|. +..++.++.+..|| .++.. +|.... +...+.++... +..+..++++
T Consensus 25 ~~~d~~g~-l~v~t~~~~l~~~d-~~g~~------------~~~~~~-----------~~~~~~~~~~~~~g~l~v~t~~ 79 (330)
T 3hxj_A 25 PILAKNGT-IYLGSSNKNLYAIN-TDGSV------------KWFFKS-----------GEIIECRPSIGKDGTIYFGSDK 79 (330)
T ss_dssp CEECTTSC-EECSSTTTTTEEEC-TTSCE------------EESSCG-----------GGEEEECCEETTTTEECCSSCE
T ss_pred ceEccCCe-EEEEcCCCEEEEEC-CCCcE------------EEEEec-----------CCCcccceEEecCCcEEEecCc
Confidence 34445665 56667778888887 43221 233211 12234555555 6667777755
Q ss_pred cEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEe
Q 004924 459 KISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG 538 (723)
Q Consensus 459 ~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s 538 (723)
+..+|. +++....+...........+. ++.+.+++.++.|..+|.. ++...........+.++...+++. +..++
T Consensus 80 -l~~~d~-~g~~~~~~~~~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt 154 (330)
T 3hxj_A 80 -VYAINP-DGTEKWRFDTKKAIVSDFTIF-EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGS 154 (330)
T ss_dssp -EEEECC-CGGGGGGSCC-----CCEEEE-TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEEC
T ss_pred -EEEECC-CCcEEEEEECCCCcccCceEE-CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEc
Confidence 888886 665544433222222223333 4477888889999999988 877766665555566677777776 56677
Q ss_pred CCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCCCCCCCeEE
Q 004924 539 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITY 618 (723)
Q Consensus 539 ~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~ 618 (723)
.++.|..+|.. ++..... .... ..+.++...+++...+++ +.|..+| .+++....+.. ....+.+
T Consensus 155 ~~~~l~~~d~~-g~~~~~~-----~~~~----~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~--~~~~~~~ 219 (330)
T 3hxj_A 155 NDNYLYAINPD-GTEKWRF-----KTND----AITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYA--GYWTVTR 219 (330)
T ss_dssp TTSEEEEECTT-SCEEEEE-----ECSS----CCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECC--SSCCCSC
T ss_pred CCCEEEEECCC-CCEeEEE-----ecCC----CceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEcc--CCcceec
Confidence 88999999998 5432221 1111 456677787888766555 8999999 67777666543 2455777
Q ss_pred EEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCC
Q 004924 619 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 619 l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
+...++|. |..++.++.|..++. +++....+... ..... .+...+ ++ .|..++.+|.|..+|. ++
T Consensus 220 ~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~--------~~~~~--~~~~~~-~g-~l~v~t~~ggl~~~d~-~g 284 (330)
T 3hxj_A 220 PAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTG--------KRIES--SPVIGN-TD-TIYFGSYDGHLYAINP-DG 284 (330)
T ss_dssp CEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECS--------SCCCS--CCEECT-TS-CEEEECTTCEEEEECT-TS
T ss_pred eEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCC--------CCccc--cceEcC-CC-eEEEecCCCCEEEECC-CC
Confidence 88887775 555667888988874 56666555421 11112 344444 44 5677788889999996 77
Q ss_pred ceeeecC
Q 004924 699 EVEWGKL 705 (723)
Q Consensus 699 ~~~w~~~ 705 (723)
+..|...
T Consensus 285 ~~~~~~~ 291 (330)
T 3hxj_A 285 TEKWNFE 291 (330)
T ss_dssp CEEEEEE
T ss_pred cEEEEEE
Confidence 7778764
No 243
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.78 E-value=2.4e-06 Score=85.07 Aligned_cols=214 Identities=14% Similarity=0.011 Sum_probs=140.7
Q ss_pred cEEEEEeCCC-CCeEEEEEcCCC-eEEEEEC--CCcEEEEeCCCCcEEEEEcCcC-CcEEEEEEcCCCCEEEEE-eCCCc
Q 004924 469 QTLATFANPP-PIATYFILLPQD-LFAFGFD--DSSILVHCPCTKKTKAKLKGHQ-NRITCLAYSLSLNVLVSS-GADAQ 542 (723)
Q Consensus 469 ~~~~~~~~~~-~~v~~l~~~p~~-~l~sgs~--dg~I~iwd~~~~~~~~~l~~~~-~~i~~l~~spdg~~l~s~-s~dg~ 542 (723)
+.+.++.... .....+.|++++ .+++.+. ++.|.++|+.+++.+..+.-.. .....+++. +..+..+ -.++.
T Consensus 10 ~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~ 87 (266)
T 2iwa_A 10 EVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNI 87 (266)
T ss_dssp EEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSE
T ss_pred eEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCE
Confidence 4555554222 345789999988 4444443 5799999999999998875322 122345554 4455444 46789
Q ss_pred EEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecCCCCC---CCeEE
Q 004924 543 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPITY 618 (723)
Q Consensus 543 I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~---~~v~~ 618 (723)
+.++|..+++.. .+++.+ . .. ...+++||+.++++ .++.|.++|..+.+.+..+....+. ..+..
T Consensus 88 v~viD~~t~~v~-----~~i~~g-~---~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ne 156 (266)
T 2iwa_A 88 GFIYDRRTLSNI-----KNFTHQ-M---KD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNE 156 (266)
T ss_dssp EEEEETTTTEEE-----EEEECC-S---SS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred EEEEECCCCcEE-----EEEECC-C---CC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccccccee
Confidence 999999986443 333333 1 11 23366688777775 5679999999999988887653221 24678
Q ss_pred EEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccC----CCCccCccceEEEEEecCCCC-EEEEEECCCcEEEE
Q 004924 619 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ----PGTISLELYPLVIAAHPLEPN-RIALGLTNGRVHVI 693 (723)
Q Consensus 619 l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~----~g~~~~~v~~~~v~~sp~d~~-~las~s~Dg~v~iW 693 (723)
+.|. +|...+....++.|.+.|..+++.+..+......+ .++ ........++|+| +++ +++++...++|.+.
T Consensus 157 le~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~-~~~~v~nGIa~~~-~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 157 LEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGF-RDIDVLNGIAWDQ-ENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTC-TTCCCEEEEEEET-TTTEEEEEETTCSEEEEE
T ss_pred EEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccc-cccCceEEEEEcC-CCCEEEEECCCCCeEEEE
Confidence 8888 77555455567999999999999999987532110 010 1112345999999 555 56666678899999
Q ss_pred ecCCC
Q 004924 694 EPLES 698 (723)
Q Consensus 694 d~~~~ 698 (723)
++...
T Consensus 234 ~l~~~ 238 (266)
T 2iwa_A 234 KLHLV 238 (266)
T ss_dssp EEEEC
T ss_pred EEecc
Confidence 88664
No 244
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.77 E-value=8.6e-05 Score=87.08 Aligned_cols=321 Identities=8% Similarity=0.007 Sum_probs=199.2
Q ss_pred CCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCC----CCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccc
Q 004924 335 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD----NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 410 (723)
Q Consensus 335 pdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~----~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~ 410 (723)
++|.. ..|+.+ .+.+|+.. ...+..+.... ......|.++...++|. |-.|+.++-|..|+......
T Consensus 272 ~~g~l-Wigt~~-Gl~~~~~~----~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~-- 342 (795)
T 4a2l_A 272 SQNRL-WIGTFN-DLNIYHEG----TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRF-- 342 (795)
T ss_dssp TTSCE-EEEESS-CEEEEETT----TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSS--
T ss_pred CCCCE-EEEeCC-hhheEcCC----CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccc--
Confidence 45554 444444 57888866 34444442110 11346799999999998 56777778888887653221
Q ss_pred cccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCcEEEEEeC--------CCCC
Q 004924 411 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFAN--------PPPI 480 (723)
Q Consensus 411 g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-dg~I~vwd~~~~~~~~~~~~--------~~~~ 480 (723)
..+..... . ..-....|.++... ...|..|+ ++.|..|+..+++....... ....
T Consensus 343 ---------~~~~~~~~---~---~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 407 (795)
T 4a2l_A 343 ---------KNIRNIPY---K---NSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNN 407 (795)
T ss_dssp ---------EEECCCTT---S---SSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSC
T ss_pred ---------eEEcCCCC---C---CCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCcc
Confidence 11111100 0 00134568899888 55566677 77899999887655433211 2356
Q ss_pred eEEEEEcCCCe-EEEEECCCcEEEEeCCCCcEEEEEc----CcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 004924 481 ATYFILLPQDL-FAFGFDDSSILVHCPCTKKTKAKLK----GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 555 (723)
Q Consensus 481 v~~l~~~p~~~-l~sgs~dg~I~iwd~~~~~~~~~l~----~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~ 555 (723)
|.++...+++. |.+|+.++-|..||..+++...... .....|.++...++|...+. +. +.+.+||..++....
T Consensus 408 v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~ 485 (795)
T 4a2l_A 408 IKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG-TL-SALVRFNPEQRSFTT 485 (795)
T ss_dssp EEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE-ES-SCEEEEETTTTEEEE
T ss_pred EEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE-ec-CceeEEeCCCCeEEE
Confidence 88998888884 9999988889999988876543322 13467999999888875554 44 468889988753211
Q ss_pred ceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecC-----CCCCCCeEEEEEeeCCcEEEE
Q 004924 556 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-----DKMDLPITYATYSCDGKCIYV 630 (723)
Q Consensus 556 ~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~-----~~h~~~v~~l~~spdg~~l~s 630 (723)
..... ...... ...|.++...++|...+++. +.+..||..+++. .+.. ......|.++..+++|.+.++
T Consensus 486 ~~~~~-~~~~~~--~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWig 559 (795)
T 4a2l_A 486 IEKEK-DGTPVV--SKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVG 559 (795)
T ss_dssp CCBCT-TCCBCC--CCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEE
T ss_pred ccccc-cccccC--CceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEE
Confidence 10000 000100 15789999999998777766 6799999877665 3321 012457899999888886655
Q ss_pred EeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 631 SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 631 gs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
+. . -|..||..+++.. .+.... |-....+. ++...+ +|.+.+++ ++.|..|++.+++
T Consensus 560 T~-~-Gl~~~d~~~~~~~-~~~~~~----gl~~~~i~--~i~~d~-~g~lWi~t--~~Gl~~~~~~~~~ 616 (795)
T 4a2l_A 560 TR-E-GFYCFNEKDKQIK-RYNTTN----GLPNNVVY--GILEDS-FGRLWLST--NRGISCFNPETEK 616 (795)
T ss_dssp ES-S-CEEEEETTTTEEE-EECGGG----TCSCSCEE--EEEECT-TSCEEEEE--TTEEEEEETTTTE
T ss_pred eC-C-CceeECCCCCcEE-EeCCCC----CCchhheE--EEEECC-CCCEEEEc--CCceEEEcCCCCc
Confidence 43 3 5888998877543 332211 21133344 788777 67766554 4567888887765
No 245
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.74 E-value=1.4e-05 Score=80.22 Aligned_cols=228 Identities=14% Similarity=0.069 Sum_probs=141.3
Q ss_pred CEEEEEeCCcEEEEEcCCCcE-----EEEEeCCCCCeEEEEEcCCC-eEE-EEECCCcEEEEeCCCCcEEEEEcCcCCcE
Q 004924 450 SHLFSASGGKISIFSLETFQT-----LATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCTKKTKAKLKGHQNRI 522 (723)
Q Consensus 450 ~~l~s~sdg~I~vwd~~~~~~-----~~~~~~~~~~v~~l~~~p~~-~l~-sgs~dg~I~iwd~~~~~~~~~l~~~~~~i 522 (723)
.+|+.+..+.|+.+++..... ...+......+..++|++++ .++ +-..++.|..++..++.....+.......
T Consensus 2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred cEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 455666656788888865432 11222223356789999976 444 44557899999988665444443333567
Q ss_pred EEEEEcCCCCEEEEE-eCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE--c--CCcEEEEE
Q 004924 523 TCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H--EGQIDVYE 597 (723)
Q Consensus 523 ~~l~~spdg~~l~s~-s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s--~--dg~I~vwd 597 (723)
..+++++++..++.+ ...+.|.+++...... ..+ ...+. .....++++|++..|+.+ . .+.|..++
T Consensus 82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~---~~~--~~~~~----~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~ 152 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR---RVL--FDTGL----VNPRGIVTDPVRGNLYWTDWNRDNPKIETSH 152 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEE--ECSSC----SSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred cEEEEEecCCeEEEEECCCCEEEEEEcCCCCE---EEE--EECCC----CCccEEEEeeCCCEEEEEECCCCCcEEEEEe
Confidence 899999976555554 4567899999875321 111 11111 357899999976666553 2 46898898
Q ss_pred CCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEe-CCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecC
Q 004924 598 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 676 (723)
Q Consensus 598 ~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~ 676 (723)
+. +.....+.. ........++++|++..|+.+. ..+.|.+++.........+.. + . .+..++..
T Consensus 153 ~d-g~~~~~~~~-~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~------~--~---~P~gi~~d-- 217 (267)
T 1npe_A 153 MD-GTNRRILAQ-DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG------L--Q---YPFAVTSY-- 217 (267)
T ss_dssp TT-SCCCEEEEC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC------C--C---SEEEEEEE--
T ss_pred cC-CCCcEEEEE-CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC------C--C---CceEEEEe--
Confidence 85 333333321 1245688999999877666554 458899999986544333221 1 1 13355543
Q ss_pred CCCEEEEEECCCcEEEEecCCCcee
Q 004924 677 EPNRIALGLTNGRVHVIEPLESEVE 701 (723)
Q Consensus 677 d~~~las~s~Dg~v~iWd~~~~~~~ 701 (723)
++.++++...++.|.+++..+++..
T Consensus 218 ~~~lyva~~~~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 218 GKNLYYTDWKTNSVIAMDLAISKEM 242 (267)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCEEEEEECCCCeEEEEeCCCCCce
Confidence 3444444446689999999888754
No 246
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.73 E-value=3.8e-06 Score=94.26 Aligned_cols=246 Identities=12% Similarity=0.080 Sum_probs=150.5
Q ss_pred CCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe-------CC
Q 004924 386 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-------GG 458 (723)
Q Consensus 386 g~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s-------dg 458 (723)
+..++.++.|+.+..+|..+++. +|....+...... .....+ ...+..+++++ ++
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~------------~W~~~~~~~~~~~--~~~~~P----~v~~g~v~vg~~~~~~~~~g 176 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKI------------NWEVEVCDPKVGS--TLTQAP----FVAKDTVLMGCSGAELGVRG 176 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCE------------EEEEECCCGGGTC--BCCSCC----EEETTEEEEECBCGGGTCCC
T ss_pred CCEEEEEeCCCEEEEEECCCCCE------------EEEecCCCCCccc--eeccCC----EEECCEEEEEecCCccCCCC
Confidence 55678888899999988775432 2443221100000 001111 12344555544 47
Q ss_pred cEEEEEcCCCcEEEEEeCCCCC-------------------------------------e-EEEEEcCCC-eEEEEECC-
Q 004924 459 KISIFSLETFQTLATFANPPPI-------------------------------------A-TYFILLPQD-LFAFGFDD- 498 (723)
Q Consensus 459 ~I~vwd~~~~~~~~~~~~~~~~-------------------------------------v-~~l~~~p~~-~l~sgs~d- 498 (723)
.|..+|..+|+.+..+...... + ..+++.++. .++.++.+
T Consensus 177 ~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~ 256 (571)
T 2ad6_A 177 AVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNP 256 (571)
T ss_dssp EEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCC
T ss_pred EEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCC
Confidence 9999999999998877632211 0 135566766 66655532
Q ss_pred ---------------CcEEEEeCCCCcEEEEEcCc--C--------CcEEEEEEcCCCC---EEEEEeCCCcEEEEeCCC
Q 004924 499 ---------------SSILVHCPCTKKTKAKLKGH--Q--------NRITCLAYSLSLN---VLVSSGADAQLCVWDAVG 550 (723)
Q Consensus 499 ---------------g~I~iwd~~~~~~~~~l~~~--~--------~~i~~l~~spdg~---~l~s~s~dg~I~vwd~~~ 550 (723)
+.|..+|.++|+.+..++.. . .++. +...++|+ .++.++.+|.++++|..+
T Consensus 257 ~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 335 (571)
T 2ad6_A 257 APWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNREN 335 (571)
T ss_dssp SCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTT
T ss_pred ccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCC
Confidence 35999999999998777532 1 2221 22234674 577888999999999999
Q ss_pred Cceeeceeeee-e------e--cCC------------------CC---CCCCeEEEEEccCCCEEEEE-c----------
Q 004924 551 WKKLCSKFLHS-F------Q--TGL------------------VP---ETTIVNHIQFHPDQIHLLSI-H---------- 589 (723)
Q Consensus 551 ~~~~~~~~l~~-~------~--~~~------------------~~---~~~~v~~l~~spdg~~l~~s-~---------- 589 (723)
|+.+....+.. . . .+. .+ ....-..++++|++..+++. .
T Consensus 336 G~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~ 415 (571)
T 2ad6_A 336 GNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFM 415 (571)
T ss_dssp CCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECC
T ss_pred CCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccc
Confidence 87654432210 0 0 000 00 00000246788887777662 2
Q ss_pred ---------------------------CCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEEC
Q 004924 590 ---------------------------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 642 (723)
Q Consensus 590 ---------------------------dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~ 642 (723)
++.|..||..+++.+-++.. ...+....+...+..++.++.||.|+.||.
T Consensus 416 ~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~---~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~ 492 (571)
T 2ad6_A 416 LPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE---KFAAWGGTLYTKGGLVWYATLDGYLKALDN 492 (571)
T ss_dssp CCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE---SSCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred cccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecC---CCCccceeEEECCCEEEEEcCCCeEEEEEC
Confidence 36899999999998777653 222333334456777888999999999999
Q ss_pred CCCcEEEEeec
Q 004924 643 STLELRCQINL 653 (723)
Q Consensus 643 ~~~~~~~~~~~ 653 (723)
++|+.+..+..
T Consensus 493 ~tG~~lw~~~~ 503 (571)
T 2ad6_A 493 KDGKELWNFKM 503 (571)
T ss_dssp TTCCEEEEEEC
T ss_pred CCCCEEEEEeC
Confidence 99999998874
No 247
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.72 E-value=4.6e-06 Score=93.61 Aligned_cols=252 Identities=13% Similarity=0.145 Sum_probs=152.2
Q ss_pred EEEeCCCCE----EEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEE
Q 004924 380 LIYSHSGDF----LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSA 455 (723)
Q Consensus 380 l~fspdg~~----las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~ 455 (723)
++++|.+.. ++.++.|+.+..+|..+++. +|....+...... .-...+ ...+..++++
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~------------~W~~~~~~~~~~~--~~~ssP----~v~~g~V~vg 172 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGET------------VWKVENSDIKVGS--TLTIAP----YVVKDKVIIG 172 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCE------------EEEEECCCGGGTC--BCCSCC----EEETTEEEEC
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCE------------EEeecCCCCCccc--eeecCC----EEECCEEEEE
Confidence 456554444 78888899999888775433 3543221100000 001111 1234445544
Q ss_pred e-------CCcEEEEEcCCCcEEEEEeCCCCC-------------------------------------e-EEEEEcCCC
Q 004924 456 S-------GGKISIFSLETFQTLATFANPPPI-------------------------------------A-TYFILLPQD 490 (723)
Q Consensus 456 s-------dg~I~vwd~~~~~~~~~~~~~~~~-------------------------------------v-~~l~~~p~~ 490 (723)
+ +|.|..+|..+|+.+..+...... + ..+++.+..
T Consensus 173 ~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~ 252 (599)
T 1w6s_A 173 SSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT 252 (599)
T ss_dssp CBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT
T ss_pred ecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCC
Confidence 3 589999999999998877633211 0 134566666
Q ss_pred -eEEEEECC----------------CcEEEEeCCCCcEEEEEcCcC----------CcEEEEEEc-CCC---CEEEEEeC
Q 004924 491 -LFAFGFDD----------------SSILVHCPCTKKTKAKLKGHQ----------NRITCLAYS-LSL---NVLVSSGA 539 (723)
Q Consensus 491 -~l~sgs~d----------------g~I~iwd~~~~~~~~~l~~~~----------~~i~~l~~s-pdg---~~l~s~s~ 539 (723)
.++.+..+ +.|.-+|.++|+.+..++... .++. +... .+| ..++.++.
T Consensus 253 g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~ 331 (599)
T 1w6s_A 253 NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDR 331 (599)
T ss_dssp TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECT
T ss_pred CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECC
Confidence 77776655 379999999999987776422 1121 2222 567 46777889
Q ss_pred CCcEEEEeCCCCceeeceeeee-------ee--cCC-------------C-----C---CCCCeEEEEEccCCCEEEEE-
Q 004924 540 DAQLCVWDAVGWKKLCSKFLHS-------FQ--TGL-------------V-----P---ETTIVNHIQFHPDQIHLLSI- 588 (723)
Q Consensus 540 dg~I~vwd~~~~~~~~~~~l~~-------~~--~~~-------------~-----~---~~~~v~~l~~spdg~~l~~s- 588 (723)
+|.++++|..+|+.+....+.. +. .+. . + ....-..++++|+...+++.
T Consensus 332 ~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~ 411 (599)
T 1w6s_A 332 NGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGI 411 (599)
T ss_dssp TSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEE
T ss_pred CcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEec
Confidence 9999999999987654433210 00 000 0 0 00011245677766555441
Q ss_pred ---------------------------------------cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEE
Q 004924 589 ---------------------------------------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY 629 (723)
Q Consensus 589 ---------------------------------------~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~ 629 (723)
..|.|..||+.+++.+-+... ..+...-.+...+..++
T Consensus 412 ~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~---~~~~~~g~~~tagg~vf 488 (599)
T 1w6s_A 412 NHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME---RFAVWGGTMATAGDLVF 488 (599)
T ss_dssp ECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE---SSCCCSBCEEETTTEEE
T ss_pred cccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC---CCCccCcceEecCCEEE
Confidence 236788999999988766642 12222222344677888
Q ss_pred EEeCCCcEEEEECCCCcEEEEeec
Q 004924 630 VSCKSGHVKVFDTSTLELRCQINL 653 (723)
Q Consensus 630 sgs~dg~I~iwd~~~~~~~~~~~~ 653 (723)
.++.||.++.||.++|+.+..+..
T Consensus 489 ~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 489 YGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp EECTTSEEEEEETTTCCEEEEEEC
T ss_pred EECCCCeEEEEECCCCCEEEEeeC
Confidence 899999999999999999998864
No 248
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.70 E-value=1.8e-06 Score=84.88 Aligned_cols=200 Identities=13% Similarity=0.056 Sum_probs=128.5
Q ss_pred EEEEEeCCCC--CeEEEEEcCCC-eEEEEECCC--cEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEe-CCCcE
Q 004924 470 TLATFANPPP--IATYFILLPQD-LFAFGFDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQL 543 (723)
Q Consensus 470 ~~~~~~~~~~--~v~~l~~~p~~-~l~sgs~dg--~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s-~dg~I 543 (723)
.++++. |.. ....+.|+ ++ .+.+.+.+| .|+++|+.+|+.+..+.... .....-..+++..|.... .++.+
T Consensus 33 vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 33 IVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEE
Confidence 445553 333 34778888 67 666666665 89999999999998876433 232222233455555544 58899
Q ss_pred EEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecCCCCC---CCeEEE
Q 004924 544 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPITYA 619 (723)
Q Consensus 544 ~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~---~~v~~l 619 (723)
.+||..+.+.... +..+ . ....+++|++.|+.+ .++.|+++|..+.+.+.++...... ..++.+
T Consensus 110 ~v~D~~t~~~~~t-----i~~~-----~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNEL 177 (262)
T 3nol_A 110 FVWNIRNLRQVRS-----FNYD-----G--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNEL 177 (262)
T ss_dssp EEEETTTCCEEEE-----EECS-----S--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEE
T ss_pred EEEECccCcEEEE-----EECC-----C--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccccccee
Confidence 9999999654433 2222 1 122344677777764 4678999999999988887653222 335567
Q ss_pred EEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCC--CccCccceEEEEEecCCCCEEEEEEC
Q 004924 620 TYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG--TISLELYPLVIAAHPLEPNRIALGLT 686 (723)
Q Consensus 620 ~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g--~~~~~v~~~~v~~sp~d~~~las~s~ 686 (723)
.|. +|+..+....++.|.+.|.++|+.+..+......+.. .....-....+||+| +++.|...+.
T Consensus 178 e~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp-~~~~lfVTGK 244 (262)
T 3nol_A 178 EWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDK-EHHRLFVTGK 244 (262)
T ss_dssp EEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEET-TTTEEEEEET
T ss_pred EEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcC-CCCEEEEECC
Confidence 776 7765555556889999999999999998865332211 001111235999999 6666666554
No 249
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.65 E-value=2.3e-06 Score=84.05 Aligned_cols=199 Identities=11% Similarity=-0.008 Sum_probs=126.5
Q ss_pred cEEEEEeCC-CCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEE--EEEEcCCCCEEEEEeCCCcEE
Q 004924 469 QTLATFANP-PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT--CLAYSLSLNVLVSSGADAQLC 544 (723)
Q Consensus 469 ~~~~~~~~~-~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~--~l~~spdg~~l~s~s~dg~I~ 544 (723)
+.+.++... ......+.|+ ++ .+.+.+.+|.|+++|+.+++.+..+ - ..... .+++.. ++..+..-.++.+.
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEEE
T ss_pred EEEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEEE
Confidence 344555322 2334678887 35 7777778889999999999988776 2 22222 344432 23444445688999
Q ss_pred EEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecCCCCC---CCeEEEE
Q 004924 545 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPITYAT 620 (723)
Q Consensus 545 vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~---~~v~~l~ 620 (723)
+||..+.+.+.. +... ..-..+ ++|++.|+.+ .++.|+++|..+.+.+.++....+. ..++.+.
T Consensus 120 V~D~~Tl~~~~t-----i~~~-----~eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe 187 (268)
T 3nok_A 120 TWSGMPPQRERT-----TRYS-----GEGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE 187 (268)
T ss_dssp EEETTTTEEEEE-----EECS-----SCCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EEECCcCcEEEE-----EeCC-----CceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence 999999654433 3222 121233 3668888875 5789999999999988887653322 2456777
Q ss_pred EeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCC---CccCccceEEEEEecCCCCEEEEE
Q 004924 621 YSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG---TISLELYPLVIAAHPLEPNRIALG 684 (723)
Q Consensus 621 ~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g---~~~~~v~~~~v~~sp~d~~~las~ 684 (723)
|. +|+..+....++.|.+.|.++|+.+..+......+.. .....-....+||+|....+++||
T Consensus 188 ~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 188 CA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred Ee-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 76 7765544446789999999999999998865322100 001111235999999444455554
No 250
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.65 E-value=1e-05 Score=90.76 Aligned_cols=237 Identities=12% Similarity=0.074 Sum_probs=148.9
Q ss_pred EEEEe-CCcEEEEEcCCCcEEEEEeCCC----CCeEE-EEEcCCCeEEEEE------CCCcEEEEeCCCCcEEEEEcCcC
Q 004924 452 LFSAS-GGKISIFSLETFQTLATFANPP----PIATY-FILLPQDLFAFGF------DDSSILVHCPCTKKTKAKLKGHQ 519 (723)
Q Consensus 452 l~s~s-dg~I~vwd~~~~~~~~~~~~~~----~~v~~-l~~~p~~~l~sgs------~dg~I~iwd~~~~~~~~~l~~~~ 519 (723)
++.++ |+.+.-+|..+|+.+....... ..+++ ... .++.+++++ .+|.|+-+|..+|+.+..+....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~ 202 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG 202 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCC
Confidence 67777 9999999999999988765322 01111 111 145555555 37999999999999987765321
Q ss_pred Cc-------------------------------------E-EEEEEcCCCCEEEEEeCCC----------------cEEE
Q 004924 520 NR-------------------------------------I-TCLAYSLSLNVLVSSGADA----------------QLCV 545 (723)
Q Consensus 520 ~~-------------------------------------i-~~l~~spdg~~l~s~s~dg----------------~I~v 545 (723)
.. + ..+++.++...++.++.++ .|..
T Consensus 203 ~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~A 282 (599)
T 1w6s_A 203 PDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFG 282 (599)
T ss_dssp CHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEE
T ss_pred CccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEE
Confidence 11 0 1345667777777777653 7999
Q ss_pred EeCCCCceeeceeeeeeecCCCC-----CCCCeEEEEEc-cCC---CEEEE-EcCCcEEEEECCCCceeEEecCCC----
Q 004924 546 WDAVGWKKLCSKFLHSFQTGLVP-----ETTIVNHIQFH-PDQ---IHLLS-IHEGQIDVYEAPTLNHTSQLVPDK---- 611 (723)
Q Consensus 546 wd~~~~~~~~~~~l~~~~~~~~~-----~~~~v~~l~~s-pdg---~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~---- 611 (723)
+|.++|+..-..... .|.. ...++ -+... .+| ..++. +.+|.++++|..+|+.+.......
T Consensus 283 ld~~TG~~~W~~q~~----~~d~wd~d~~~~p~-l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 357 (599)
T 1w6s_A 283 RDADTGEAKFGYQKT----PHDEWDYAGVNVMM-LSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNV 357 (599)
T ss_dssp EETTTCCEEEEEESS----TTCSSCCCCCCCCE-EEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred EeCCCCceeeEeecC----CCccccccCCCccE-EEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccc
Confidence 999998654432221 1100 00112 12222 567 34554 488999999999999876654211
Q ss_pred -------CCCCe--------------------------EEEEEeeCCcEEEEEe--------------------------
Q 004924 612 -------MDLPI--------------------------TYATYSCDGKCIYVSC-------------------------- 632 (723)
Q Consensus 612 -------h~~~v--------------------------~~l~~spdg~~l~sgs-------------------------- 632 (723)
...++ ..++++|+..++++..
T Consensus 358 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 437 (599)
T 1w6s_A 358 FKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLN 437 (599)
T ss_dssp EEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred ccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccce
Confidence 01111 2456777766655431
Q ss_pred -------------CCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 633 -------------KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 633 -------------~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
.+|.|..||+.+|+.+....... ..+.-.++ . .+.+++.++.||.++.||..+|+
T Consensus 438 ~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~---------~~~~g~~~--t-agg~vf~gt~dg~l~A~D~~tG~ 505 (599)
T 1w6s_A 438 MYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF---------AVWGGTMA--T-AGDLVFYGTLDGYLKARDSDTGD 505 (599)
T ss_dssp EEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS---------CCCSBCEE--E-TTTEEEEECTTSEEEEEETTTCC
T ss_pred eccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC---------CccCcceE--e-cCCEEEEECCCCeEEEEECCCCC
Confidence 34789999999999888775311 11100111 1 46788889999999999999999
Q ss_pred eeeecCC
Q 004924 700 VEWGKLP 706 (723)
Q Consensus 700 ~~w~~~~ 706 (723)
..|....
T Consensus 506 ~lW~~~l 512 (599)
T 1w6s_A 506 LLWKFKI 512 (599)
T ss_dssp EEEEEEC
T ss_pred EEEEeeC
Confidence 9998843
No 251
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.64 E-value=1.9e-05 Score=88.59 Aligned_cols=244 Identities=13% Similarity=0.096 Sum_probs=150.8
Q ss_pred EEeCCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCC----CeE-EEEEcCC---C--eEEEEEC------CCcEEEEeCCC
Q 004924 446 ALRGSHLFSAS-GGKISIFSLETFQTLATFANPPP----IAT-YFILLPQ---D--LFAFGFD------DSSILVHCPCT 508 (723)
Q Consensus 446 ~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~----~v~-~l~~~p~---~--~l~sgs~------dg~I~iwd~~~ 508 (723)
++.+..++.++ ++.+.-+|..+|+.+........ .+. +.....+ + .+++++. ++.|+-+|..+
T Consensus 114 a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~t 193 (582)
T 1flg_A 114 AIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT 193 (582)
T ss_dssp EEETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTT
T ss_pred EEECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCC
Confidence 34566777777 99999999999999887753321 111 1111122 3 5556543 78999999999
Q ss_pred CcEEEEEcCcCCcE-----------------------------------------EEEEEcCCCCEEEEEeC--------
Q 004924 509 KKTKAKLKGHQNRI-----------------------------------------TCLAYSLSLNVLVSSGA-------- 539 (723)
Q Consensus 509 ~~~~~~l~~~~~~i-----------------------------------------~~l~~spdg~~l~s~s~-------- 539 (723)
|+.+.........+ ..++++|+...++.++.
T Consensus 194 G~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~ 273 (582)
T 1flg_A 194 GEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTW 273 (582)
T ss_dssp CCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGG
T ss_pred CCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCc
Confidence 99886653211000 12456677677776663
Q ss_pred ------------C----CcEEEEeCCCCceeeceeeeeeecCCC-----CCCCCeEEEEEc-cCCC---EEEE-EcCCcE
Q 004924 540 ------------D----AQLCVWDAVGWKKLCSKFLHSFQTGLV-----PETTIVNHIQFH-PDQI---HLLS-IHEGQI 593 (723)
Q Consensus 540 ------------d----g~I~vwd~~~~~~~~~~~l~~~~~~~~-----~~~~~v~~l~~s-pdg~---~l~~-s~dg~I 593 (723)
| +.|..+|.++|+..-..... .|. ....++. +... .+|+ .++. +.+|.+
T Consensus 274 ~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~----~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l 348 (582)
T 1flg_A 274 ARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHT----PNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFF 348 (582)
T ss_dssp GGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESS----TTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEE
T ss_pred ccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCC----CCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceE
Confidence 2 57999999998765432221 110 0001221 2222 4674 4555 488999
Q ss_pred EEEECCCCceeEEecCCCC-----------CCC--------------------------------eEEEEEeeCCcEEEE
Q 004924 594 DVYEAPTLNHTSQLVPDKM-----------DLP--------------------------------ITYATYSCDGKCIYV 630 (723)
Q Consensus 594 ~vwd~~~~~~~~~~~~~~h-----------~~~--------------------------------v~~l~~spdg~~l~s 630 (723)
+++|..+|+.+..+..... ..+ -..++++|+...+++
T Consensus 349 ~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv 428 (582)
T 1flg_A 349 YVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYV 428 (582)
T ss_dssp EEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEE
T ss_pred EEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEE
Confidence 9999999998766543210 000 013466666555554
Q ss_pred Ee---------------------------------CCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCC
Q 004924 631 SC---------------------------------KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 677 (723)
Q Consensus 631 gs---------------------------------~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d 677 (723)
.. .+|.|+.||..+|+.+.+..... ......+. . .
T Consensus 429 ~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~---------~~~~g~~~--t-a 496 (582)
T 1flg_A 429 PANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL---------PLWAGVLA--T-A 496 (582)
T ss_dssp EEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS---------CCCSCCEE--E-T
T ss_pred echhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC---------CCcccceE--e-C
Confidence 32 25889999999999888775321 11100111 1 3
Q ss_pred CCEEEEEECCCcEEEEecCCCceeeecCC
Q 004924 678 PNRIALGLTNGRVHVIEPLESEVEWGKLP 706 (723)
Q Consensus 678 ~~~las~s~Dg~v~iWd~~~~~~~w~~~~ 706 (723)
+.+++.++.||.++.||..+|+..|....
T Consensus 497 gglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 497 GNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 56888899999999999999999998854
No 252
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.62 E-value=2.7e-05 Score=87.42 Aligned_cols=173 Identities=12% Similarity=0.122 Sum_probs=106.7
Q ss_pred CcEEEEeCCCCcEEEEEcC--cC--------CcEEEEEEc-CCCC---EEEEEeCCCcEEEEeCCCCceeeceeeee-e-
Q 004924 499 SSILVHCPCTKKTKAKLKG--HQ--------NRITCLAYS-LSLN---VLVSSGADAQLCVWDAVGWKKLCSKFLHS-F- 562 (723)
Q Consensus 499 g~I~iwd~~~~~~~~~l~~--~~--------~~i~~l~~s-pdg~---~l~s~s~dg~I~vwd~~~~~~~~~~~l~~-~- 562 (723)
+.|.-+|..+|+.+..++. |. .++. +... .+|+ .++.++.+|.++++|..+|+.+....+.. .
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 5899999999999987753 21 1221 1222 4674 68889999999999999987654333220 0
Q ss_pred -ec------C-------CCC--------CC------------CCeEEEEEccCCCEEEE-E-------------------
Q 004924 563 -QT------G-------LVP--------ET------------TIVNHIQFHPDQIHLLS-I------------------- 588 (723)
Q Consensus 563 -~~------~-------~~~--------~~------------~~v~~l~~spdg~~l~~-s------------------- 588 (723)
.. + ..+ .. ..-..++++|+...+++ .
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 00 0 000 00 00114566776555544 2
Q ss_pred --------------cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecc
Q 004924 589 --------------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLT 654 (723)
Q Consensus 589 --------------~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 654 (723)
.+|.|..||+.+++.+-+.... .++..-.....+.+++.|+.||.++.||.++|+.+..+...
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~ 526 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG 526 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCC---CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCC
Confidence 1477999999999987666432 22222223345778888999999999999999999988752
Q ss_pred cccCCCCccCccceEEEEEecCCCC-EEEEEE
Q 004924 655 AYAQPGTISLELYPLVIAAHPLEPN-RIALGL 685 (723)
Q Consensus 655 ~~~~~g~~~~~v~~~~v~~sp~d~~-~las~s 685 (723)
. .+...-+.|.. +|+ |+++.+
T Consensus 527 ~---------g~~a~P~~y~~-~G~qYv~~~~ 548 (582)
T 1flg_A 527 S---------GIVSPPITWEQ-DGEQYLGVTV 548 (582)
T ss_dssp S---------CCCSCCEEEEE-TTEEEEEEEE
T ss_pred C---------CcccCceEEEE-CCEEEEEEEc
Confidence 1 22222356666 565 454443
No 253
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.59 E-value=2.5e-06 Score=93.45 Aligned_cols=184 Identities=15% Similarity=0.070 Sum_probs=126.7
Q ss_pred CC-eEEEEE-CCCcEEEEeCCCCcEEEEEcC-cCCcEEEEEE-c-CCCCEEEEEeC------------------CCcEEE
Q 004924 489 QD-LFAFGF-DDSSILVHCPCTKKTKAKLKG-HQNRITCLAY-S-LSLNVLVSSGA------------------DAQLCV 545 (723)
Q Consensus 489 ~~-~l~sgs-~dg~I~iwd~~~~~~~~~l~~-~~~~i~~l~~-s-pdg~~l~s~s~------------------dg~I~v 545 (723)
|| ++++.. .++.|.+.|+.+.++.+.+.- ....+..+++ + |+++++++++. ++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 77 555544 456799999999998885542 2345788887 5 99999988852 457899
Q ss_pred EeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCC---------------------------------
Q 004924 546 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG--------------------------------- 591 (723)
Q Consensus 546 wd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg--------------------------------- 591 (723)
+|..+.+.. .++.-+ +....++++|+|+++++ +.+.
T Consensus 180 ID~~t~~v~-----~qI~Vg-----g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk 249 (595)
T 1fwx_A 180 VDADKWEVA-----WQVLVS-----GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 249 (595)
T ss_dssp EETTTTEEE-----EEEEES-----SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred EECCCCeEE-----EEEEeC-----CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCC
Confidence 999985432 223322 23456789999999887 4221
Q ss_pred -----cEEEEECCC--Cce-eEEecCCCCCCCeEEEEEeeCCcEEEEEe-CCCcEEEEECCCCc------------EEEE
Q 004924 592 -----QIDVYEAPT--LNH-TSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLE------------LRCQ 650 (723)
Q Consensus 592 -----~I~vwd~~~--~~~-~~~~~~~~h~~~v~~l~~spdg~~l~sgs-~dg~I~iwd~~~~~------------~~~~ 650 (723)
.|.|.|..+ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+ ....
T Consensus 250 ~~~i~~V~VID~~~~~~~~~~~~Ipv---g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~ 326 (595)
T 1fwx_A 250 YQELNGVKVVDGRKEASSLFTRYIPI---ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 326 (595)
T ss_dssp SEEETTEEEEECSGGGCCSSEEEEEE---ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred eeEECcEEEEeCcccCCceeEEEEec---CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence 367777776 444 344432 33456899999999888765 57899999999653 2222
Q ss_pred eecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCC
Q 004924 651 INLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 651 ~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~ 697 (723)
+. .| ..+..++|+| +|...++.-.|+.|.+|++.+
T Consensus 327 v~------vG-----~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 327 PE------LG-----LGPLHTAFDG-RGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CB------CC-----SCEEEEEECT-TSEEEEEETTTTEEEEEEHHH
T ss_pred cC------CC-----CCcceEEECC-CCeEEEEEecCCcEEEEEhhH
Confidence 21 12 2256899999 785556677899999999977
No 254
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.59 E-value=9.6e-06 Score=79.70 Aligned_cols=184 Identities=12% Similarity=0.061 Sum_probs=123.9
Q ss_pred eEEEEEe-CCEEEEEe-CC--cEEEEEcCCCcEEEEEeCCCCCe-EEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEc
Q 004924 442 ISCFALR-GSHLFSAS-GG--KISIFSLETFQTLATFANPPPIA-TYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK 516 (723)
Q Consensus 442 V~~v~~s-~~~l~s~s-dg--~I~vwd~~~~~~~~~~~~~~~~v-~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~ 516 (723)
...+.|+ +.++.+++ +| .|+++|+.+++.+..+.-..... ..++...+...+....++.+.+||..+.+.+.++.
T Consensus 45 tqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~ 124 (262)
T 3nol_A 45 TEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFN 124 (262)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred cceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEE
Confidence 4678888 65555555 55 89999999999998887443321 23444322133344468899999999999999887
Q ss_pred CcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEE
Q 004924 517 GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDV 595 (723)
Q Consensus 517 ~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~v 595 (723)
... ....+++|+..|+.+..++.|.++|..+.+......+. ..+.. ...++.+.|. +|+..+.. .++.|.+
T Consensus 125 ~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~--~~g~~--~~~lNELe~~-~G~lyan~w~~~~I~v 196 (262)
T 3nol_A 125 YDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVT--AHGEE--LPELNELEWV-DGEIFANVWQTNKIVR 196 (262)
T ss_dssp CSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECE--ETTEE--CCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred CCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEec--cCCcc--ccccceeEEE-CCEEEEEEccCCeEEE
Confidence 422 11233457777777776788999999987654443332 11111 0345567776 67655545 6789999
Q ss_pred EECCCCceeEEecCCC----------CCCCeEEEEEeeCCcEEEEEeC
Q 004924 596 YEAPTLNHTSQLVPDK----------MDLPITYATYSCDGKCIYVSCK 633 (723)
Q Consensus 596 wd~~~~~~~~~~~~~~----------h~~~v~~l~~spdg~~l~sgs~ 633 (723)
.|..+++.+..+...+ .....+.++|+|+++.|++.+.
T Consensus 197 IDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 197 IDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp ECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 9999999988876421 1235688999999887777664
No 255
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.58 E-value=0.00024 Score=83.12 Aligned_cols=327 Identities=11% Similarity=0.004 Sum_probs=192.7
Q ss_pred CCCCEEEEEeCCCeEEEEeecccCCCCceeEEec-----------CCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEec
Q 004924 335 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLL-----------PDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW 403 (723)
Q Consensus 335 pdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l-----------~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~ 403 (723)
++|. +..|+..+.+.+++... ..+..+.. +.......|.++...++|. |-.|+.++-|..++.
T Consensus 267 ~~g~-lWigt~~~Gl~~~~~~~----~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~ 340 (781)
T 3v9f_A 267 KDNK-LWIATELNGIMILDLQQ----NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISN 340 (781)
T ss_dssp TTSE-EEEEESSSCEEEEETTC----C---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECS
T ss_pred CCCC-EEEEeCCCCeEEECCCC----CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCC
Confidence 3444 55566556677888763 22222211 0012456899999999998 566777777888876
Q ss_pred cCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCcEEEEE---eCCC
Q 004924 404 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATF---ANPP 478 (723)
Q Consensus 404 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-dg~I~vwd~~~~~~~~~~---~~~~ 478 (723)
..... ..+...... .....-....|.++... ...|..|+ ++.+..|+..++...... ....
T Consensus 341 ~~~~~-----------~~~~~~~~~---~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~ 406 (781)
T 3v9f_A 341 APPTF-----------HTWSYSPTQ---MNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLS 406 (781)
T ss_dssp SCCSC-----------EEEC----C---CCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCC
T ss_pred CCCcc-----------eeeccCccc---cccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCC
Confidence 53221 111100000 00000134568888888 45566666 777999998755332211 1234
Q ss_pred CCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEc--CcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeec
Q 004924 479 PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 556 (723)
Q Consensus 479 ~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~--~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~ 556 (723)
..|.++...++|.|..|+.++-+..+|..+++...... .....|.++...++|.. ..|+. +.|..||..++....
T Consensus 407 ~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~~~~- 483 (781)
T 3v9f_A 407 NSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKI-WIGTH-AGVFVIDLASKKVIH- 483 (781)
T ss_dssp SBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEE-EEEET-TEEEEEESSSSSCCE-
T ss_pred cceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCE-EEEEC-CceEEEeCCCCeEEe-
Confidence 57888888877766668877789999988765433221 13467999988888864 44555 568889987753211
Q ss_pred eeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCC--CCCCCeEEEEEeeCCcEEEEEeCC
Q 004924 557 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD--KMDLPITYATYSCDGKCIYVSCKS 634 (723)
Q Consensus 557 ~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~--~h~~~v~~l~~spdg~~l~sgs~d 634 (723)
..... ........|.++...++|...+++.++.+..||..+++. ..+... -....|.++...++|.+.+++ .+
T Consensus 484 --~~~~~-~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~ 558 (781)
T 3v9f_A 484 --HYDTS-NSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLAT-GE 558 (781)
T ss_dssp --EECTT-TSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEE-TT
T ss_pred --cccCc-ccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEE-CC
Confidence 11000 000001578999999999888777656688899876654 333221 124578899988888865554 46
Q ss_pred CcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 635 GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 635 g~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
|.|..||..+++. ..+.... |-....+. ++...+ +|.+.++ +.+| |..+++.++.
T Consensus 559 Glv~~~d~~~~~~-~~~~~~~----gl~~~~i~--~i~~d~-~g~lW~~-t~~G-l~~~~~~~~~ 613 (781)
T 3v9f_A 559 GLVCFPSARNFDY-QVFQRKE----GLPNTHIR--AISEDK-NGNIWAS-TNTG-ISCYITSKKC 613 (781)
T ss_dssp EEEEESCTTTCCC-EEECGGG----TCSCCCCC--EEEECS-SSCEEEE-CSSC-EEEEETTTTE
T ss_pred CceEEECCCCCcE-EEccccC----CCCCceEE--EEEECC-CCCEEEE-cCCc-eEEEECCCCc
Confidence 7658899887763 3333211 21233444 787777 6766554 3444 7778877654
No 256
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.58 E-value=1.9e-05 Score=78.47 Aligned_cols=198 Identities=10% Similarity=0.032 Sum_probs=133.8
Q ss_pred CeEEEEEe-CCEEEEEe----CCcEEEEEcCCCcEEEEEeCCC-CCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEE
Q 004924 441 SISCFALR-GSHLFSAS----GGKISIFSLETFQTLATFANPP-PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAK 514 (723)
Q Consensus 441 ~V~~v~~s-~~~l~s~s----dg~I~vwd~~~~~~~~~~~~~~-~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~ 514 (723)
....+.|+ +..|+.++ ++.|.++|+.+++.+..+.-.. .....+++..+...++...++.+.++|..+++.+..
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~ 101 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKN 101 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEE
Confidence 35789999 35555543 3789999999999998876322 233345554221444445678999999999999988
Q ss_pred EcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcE
Q 004924 515 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQI 593 (723)
Q Consensus 515 l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I 593 (723)
+...... ...+++||+.++++..++.|.++|..+.+......+.. .+.. ...+..+.|. +|...+.. .++.|
T Consensus 102 i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~--~~~p--~~~~nele~~-dg~lyvn~~~~~~V 174 (266)
T 2iwa_A 102 FTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKY--NGHR--VIRLNELEYI-NGEVWANIWQTDCI 174 (266)
T ss_dssp EECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEE--TTEE--CCCEEEEEEE-TTEEEEEETTSSEE
T ss_pred EECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECC--CCcc--cccceeEEEE-CCEEEEecCCCCeE
Confidence 8532111 23356688877777778999999999865443333221 1110 0246788888 67544444 67899
Q ss_pred EEEECCCCceeEEecCCC-----------CCCCeEEEEEeeCCcEEE-EEeCCCcEEEEECCCC
Q 004924 594 DVYEAPTLNHTSQLVPDK-----------MDLPITYATYSCDGKCIY-VSCKSGHVKVFDTSTL 645 (723)
Q Consensus 594 ~vwd~~~~~~~~~~~~~~-----------h~~~v~~l~~spdg~~l~-sgs~dg~I~iwd~~~~ 645 (723)
.+.|..+++.+..+...+ .......++|+|+++.++ ++...+++++.++...
T Consensus 175 ~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 175 ARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 999999999988886421 113568999999987555 5556788988887654
No 257
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.57 E-value=4.4e-06 Score=82.10 Aligned_cols=184 Identities=11% Similarity=0.101 Sum_probs=123.7
Q ss_pred CCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCC-CeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEc
Q 004924 440 DSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPP-IATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK 516 (723)
Q Consensus 440 ~~V~~v~~s-~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~-~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~ 516 (723)
.-...+.|+ +.+..+.+ +|.|+++|+++++.+..+ -... ....+++..+........++.+.+||..+.+.+.++.
T Consensus 55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~ 133 (268)
T 3nok_A 55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTR 133 (268)
T ss_dssp CCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred cccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence 345788899 54455555 789999999999988877 2222 1223555433244445578899999999999999887
Q ss_pred CcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEE
Q 004924 517 GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDV 595 (723)
Q Consensus 517 ~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~v 595 (723)
.... -..+ ++|++.|+.+..++.|.++|..+.+......+.. .+.. ...++.+.|. +|+..+.. .++.|.+
T Consensus 134 ~~~e-GwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~--~g~~--v~~lNeLe~~-dG~lyanvw~s~~I~v 205 (268)
T 3nok_A 134 YSGE-GWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL--RGQP--VELINELECA-NGVIYANIWHSSDVLE 205 (268)
T ss_dssp CSSC-CCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEE--TTEE--CCCEEEEEEE-TTEEEEEETTCSEEEE
T ss_pred CCCc-eeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC--CCcc--cccccccEEe-CCEEEEEECCCCeEEE
Confidence 4222 1233 3567888888788999999999976554433331 1110 0345677877 67655445 6789999
Q ss_pred EECCCCceeEEecCC-----------CCCCCeEEEEEeeCCcEEEEEe
Q 004924 596 YEAPTLNHTSQLVPD-----------KMDLPITYATYSCDGKCIYVSC 632 (723)
Q Consensus 596 wd~~~~~~~~~~~~~-----------~h~~~v~~l~~spdg~~l~sgs 632 (723)
.|..+++.+..+... ....-.+.++|+|+++.|++.+
T Consensus 206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 999999998887542 0124578899999876555554
No 258
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.56 E-value=4.2e-05 Score=74.49 Aligned_cols=200 Identities=13% Similarity=0.053 Sum_probs=126.9
Q ss_pred cEEEEEeCCC--CCeEEEEEcCCC-eEEEEECC--CcEEEEeCCCCcEEEEEcCcCCcE-EEEEEcCCCCEEE-EEeCCC
Q 004924 469 QTLATFANPP--PIATYFILLPQD-LFAFGFDD--SSILVHCPCTKKTKAKLKGHQNRI-TCLAYSLSLNVLV-SSGADA 541 (723)
Q Consensus 469 ~~~~~~~~~~--~~v~~l~~~p~~-~l~sgs~d--g~I~iwd~~~~~~~~~l~~~~~~i-~~l~~spdg~~l~-s~s~dg 541 (723)
+.+.++ .|. .....+.|++ + .+.+.+.+ +.|+.+|+.+|+.+..+....... ..++.. +..|. ..-.++
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCC
Confidence 344555 333 3456888886 6 55555554 489999999999998876432211 233333 44444 445688
Q ss_pred cEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecCCCCC---CCeE
Q 004924 542 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPIT 617 (723)
Q Consensus 542 ~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~---~~v~ 617 (723)
.+.+||.++.+.+.. +..+. .-..+ .+++..|+++ .++.|+++|..+.+.+.++....+. ..++
T Consensus 86 ~v~v~D~~tl~~~~t-----i~~~~-----~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lN 153 (243)
T 3mbr_X 86 EGFVYDLATLTPRAR-----FRYPG-----EGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLN 153 (243)
T ss_dssp EEEEEETTTTEEEEE-----EECSS-----CCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred EEEEEECCcCcEEEE-----EeCCC-----CceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccce
Confidence 999999999654333 33221 12233 4567766664 5778999999999988887653322 3456
Q ss_pred EEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCc---cCccceEEEEEecCCCCEEEEEEC
Q 004924 618 YATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI---SLELYPLVIAAHPLEPNRIALGLT 686 (723)
Q Consensus 618 ~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~---~~~v~~~~v~~sp~d~~~las~s~ 686 (723)
.+.|. +|+..+....+..|.+.|.++|+.+..+......+.... ...-....+||+| +++.|...+.
T Consensus 154 eLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~-~~~~lfVTGK 223 (243)
T 3mbr_X 154 ELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDA-EHDRLFVTGK 223 (243)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEET-TTTEEEEEET
T ss_pred eeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcC-CCCEEEEECC
Confidence 66765 676554454678999999999999999986644322100 1111235999999 5555555553
No 259
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.55 E-value=0.00049 Score=80.45 Aligned_cols=321 Identities=12% Similarity=0.023 Sum_probs=187.6
Q ss_pred EEEEeCCCeEEEEeecccCCCCceeEEecCC----CCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccce
Q 004924 340 AVCAKSLEKSVNLKLQLINEPSECRTLLLPD----NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 415 (723)
Q Consensus 340 la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~----~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~ 415 (723)
+..++.++.+..|+.. ...+..+.... ......|.++...++|...+ |+.+ -+.+||..+...
T Consensus 176 lwigt~~~Gl~~~~~~----~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~------- 242 (781)
T 3v9f_A 176 LYIGHVEGGLSILSLN----DKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNANTETF------- 242 (781)
T ss_dssp EEEEETTTEEEEEETT----TTEEEEECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETTTTEE-------
T ss_pred EEEEecCCCeEEEcCC----CCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCCCCcE-------
Confidence 4445556567777765 23343332110 00235799999999988544 4544 677787553221
Q ss_pred eeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCcEEEEEe--------------CCCC
Q 004924 416 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA--------------NPPP 479 (723)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s-dg~I~vwd~~~~~~~~~~~--------------~~~~ 479 (723)
..+........ .-....|.++... ...+..|+ .+.|.++|..++....... -...
T Consensus 243 ----~~~~~~~~~~~-----~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~ 313 (781)
T 3v9f_A 243 ----TNFHNNPGNIH-----GALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNA 313 (781)
T ss_dssp ----EC----------------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSS
T ss_pred ----EEEEcCCCccc-----cccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCC
Confidence 00100000000 0134568888887 66677777 4789999987765332111 1245
Q ss_pred CeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEEEEc--------C-cCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 004924 480 IATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK--------G-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 550 (723)
Q Consensus 480 ~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~--------~-~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~ 550 (723)
.|.++...++|.+..|+.++-|..++..++....... + ....|.++...++|. |..|+.++-|..||..+
T Consensus 314 ~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 392 (781)
T 3v9f_A 314 SARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGK 392 (781)
T ss_dssp CEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTE
T ss_pred eEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCC
Confidence 6889988888877778878889999987654332210 0 235689998888876 45567677788999876
Q ss_pred CceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecC-CCCCCCeEEEEEeeCCcEEE
Q 004924 551 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIY 629 (723)
Q Consensus 551 ~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~-~~h~~~v~~l~~spdg~~l~ 629 (723)
+.... ......... ..|.++...++|...+.+.++.+..+|..+++.. .+.. ......|.++...++|.+.+
T Consensus 393 ~~~~~---~~~~~~~~~---~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~lwi 465 (781)
T 3v9f_A 393 RVAIY---NKENRELLS---NSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKKIWI 465 (781)
T ss_dssp EEEEC---C-----CCC---SBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSEEEE
T ss_pred CeEEE---ccCCCCCCC---cceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCCEEE
Confidence 32211 100001111 5789999998888877767678999998777543 3321 11256788888888887554
Q ss_pred EEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 630 VSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 630 sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
|+. +-|..|+..+++......... .+.... .+.++...+ ++.+.+ |+.++.|..|+..+++
T Consensus 466 -gt~-~Gl~~~~~~~~~~~~~~~~~~---~~~~~~--~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~ 526 (781)
T 3v9f_A 466 -GTH-AGVFVIDLASKKVIHHYDTSN---SQLLEN--FVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQL 526 (781)
T ss_dssp -EET-TEEEEEESSSSSCCEEECTTT---SSCSCS--CEEEEEECT-TCCEEE-EESSSCEEEECTTCCE
T ss_pred -EEC-CceEEEeCCCCeEEecccCcc---cccccc--eeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCe
Confidence 444 568999988876543322110 000112 244787777 666544 4554457788886654
No 260
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.52 E-value=6.3e-05 Score=77.69 Aligned_cols=233 Identities=12% Similarity=0.001 Sum_probs=143.3
Q ss_pred eEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeC-C-------------------CCCeEEEEEcC-CCeEEEEEC
Q 004924 442 ISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN-P-------------------PPIATYFILLP-QDLFAFGFD 497 (723)
Q Consensus 442 V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~-~-------------------~~~v~~l~~~p-~~~l~sgs~ 497 (723)
..+++|. +++++++. ++.|..|+..+++.. .+.. . ...+..+++.+ ++.|+++..
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 3456777 56566776 889999998765433 2221 0 13478899998 566666665
Q ss_pred CCcEEEEeCCCCcEEEEEcC-----cCCcEEEEEEcC-CCCEEEEEeC-----------------CCcEEEEeCCCCcee
Q 004924 498 DSSILVHCPCTKKTKAKLKG-----HQNRITCLAYSL-SLNVLVSSGA-----------------DAQLCVWDAVGWKKL 554 (723)
Q Consensus 498 dg~I~iwd~~~~~~~~~l~~-----~~~~i~~l~~sp-dg~~l~s~s~-----------------dg~I~vwd~~~~~~~ 554 (723)
.+.|..+|..++.. ..+.. .....+.+++.+ +|+..++-.. ++.|..||..+++..
T Consensus 100 ~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 100 YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 66688899776532 22211 123578899999 9977665432 367888888765321
Q ss_pred eceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE--cCCcEEEEECCCCc--eeEEecCCCCCCCeEEEEEeeCCcEEEE
Q 004924 555 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLN--HTSQLVPDKMDLPITYATYSCDGKCIYV 630 (723)
Q Consensus 555 ~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s--~dg~I~vwd~~~~~--~~~~~~~~~h~~~v~~l~~spdg~~l~s 630 (723)
. +...- .....++++|+|+.|+++ ..+.|++|++.... ....+.. . .+ ...++++++|++.++
T Consensus 179 ~------~~~~~----~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~-~g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 179 L------LLKEL----HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-I-PN-PGNIKRNADGHFWVS 245 (322)
T ss_dssp E------EEEEE----SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-C-SS-EEEEEECTTSCEEEE
T ss_pred E------eccCC----ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-C-CC-CCCeEECCCCCEEEE
Confidence 1 11111 245679999999877664 56899999987421 1122211 1 23 778999999987666
Q ss_pred EeC----------CCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCC
Q 004924 631 SCK----------SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 631 gs~----------dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
... .+.|..+|.. ++.+..+.... |.... .+..+++ . ++.++++...++.|.++++...
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~----g~~~~--~~~~~~~-~-~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPP----PFAGE--HFEQIQE-H-DGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCT----TTTTS--CCCEEEE-E-TTEEEEECSSCSEEEEEEC---
T ss_pred ecCcccccccCCCccEEEEECCC-CCEEEEEECCC----CCccc--cceEEEE-e-CCEEEEeecCCCceEEEecccc
Confidence 544 4678888874 77766665321 11011 2335665 3 5666666667889999988643
No 261
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.51 E-value=4.4e-05 Score=74.35 Aligned_cols=187 Identities=13% Similarity=0.102 Sum_probs=125.0
Q ss_pred CCCeEEEEEe-CCEEEEEe-C--CcEEEEEcCCCcEEEEEeCCCCC-eEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEE
Q 004924 439 KDSISCFALR-GSHLFSAS-G--GKISIFSLETFQTLATFANPPPI-ATYFILLPQDLFAFGFDDSSILVHCPCTKKTKA 513 (723)
Q Consensus 439 ~~~V~~v~~s-~~~l~s~s-d--g~I~vwd~~~~~~~~~~~~~~~~-v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~ 513 (723)
..-...+.|+ +.+..+.+ + +.|+++|+.+++.+..+.-.... -..++...+........++.+.+||..+.+.+.
T Consensus 20 ~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ 99 (243)
T 3mbr_X 20 TAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRA 99 (243)
T ss_dssp TCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred ccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEE
Confidence 3456789999 54555555 4 48999999999999888644332 123444332244445578899999999999999
Q ss_pred EEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCc
Q 004924 514 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQ 592 (723)
Q Consensus 514 ~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~ 592 (723)
++...... ..+ .+++..|+++..++.|.++|..+.+......+..-.... ..++.+.+. +|+..+.. .+..
T Consensus 100 ti~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~----~~lNeLe~~-~G~lyanvw~s~~ 171 (243)
T 3mbr_X 100 RFRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPL----DNLNELEWV-NGELLANVWLTSR 171 (243)
T ss_dssp EEECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEEC----CCEEEEEEE-TTEEEEEETTTTE
T ss_pred EEeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccc----ccceeeEEe-CCEEEEEECCCCe
Confidence 88743222 233 356777777777889999999987654443332100111 345667766 56655445 6789
Q ss_pred EEEEECCCCceeEEecCCC-----------CCCCeEEEEEeeCCcEEEEEeC
Q 004924 593 IDVYEAPTLNHTSQLVPDK-----------MDLPITYATYSCDGKCIYVSCK 633 (723)
Q Consensus 593 I~vwd~~~~~~~~~~~~~~-----------h~~~v~~l~~spdg~~l~sgs~ 633 (723)
|.+.|..+++.+..+...+ ...-.+.++++|+++.|++.+.
T Consensus 172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 9999999999988876321 1245688999998776666553
No 262
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.46 E-value=0.0011 Score=68.53 Aligned_cols=278 Identities=9% Similarity=0.061 Sum_probs=152.8
Q ss_pred CCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCEE
Q 004924 374 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 452 (723)
Q Consensus 374 ~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l 452 (723)
...+.++.|.+++..++ ++.+|.| ++..+.+.. |....... ......+.++.|. +..+
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i-~~s~DgG~t-------------W~~~~~~~------~~~~~~~~~i~~~~~~~~ 93 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATL-METRDGGQT-------------WEPRTLVL------DHSDYRFNSVSFQGNEGW 93 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEE-EEESSTTSS-------------CEECCCCC------SCCCCEEEEEEEETTEEE
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeE-EEeCCCCCC-------------CeECCCCC------CCCCccEEEEEecCCeEE
Confidence 45789999988887766 5566765 222222111 33211100 0124467888888 5555
Q ss_pred EEEeCCcEEEEEcCCCcEEEEEe---CCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEE-EEcCcCCcEEEEEE
Q 004924 453 FSASGGKISIFSLETFQTLATFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA-KLKGHQNRITCLAY 527 (723)
Q Consensus 453 ~s~sdg~I~vwd~~~~~~~~~~~---~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~-~l~~~~~~i~~l~~ 527 (723)
+++..+.|.. ..+.|+.-.... .....+..+.+.+++ .++++ .+|.|..- .+.|+.-. ...+....+..+.+
T Consensus 94 ~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~ 170 (327)
T 2xbg_A 94 IVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNR 170 (327)
T ss_dssp EEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEE
T ss_pred EEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEE
Confidence 5444775544 333344333332 123457778877777 55544 46654332 23343332 23345667899999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEe
Q 004924 528 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQL 607 (723)
Q Consensus 528 spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~ 607 (723)
.+++..++++...+..+-+|-. +. ....+. .... ..+..+.+.+++..++++.+|.+++.+...++.-..+
T Consensus 171 ~~~~~~~~~g~~G~~~~S~d~g-G~--tW~~~~---~~~~---~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~ 241 (327)
T 2xbg_A 171 SPSGEYVAVSSRGSFYSTWEPG-QT--AWEPHN---RTTS---RRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGEL 241 (327)
T ss_dssp CTTSCEEEEETTSSEEEEECTT-CS--SCEEEE---CCSS---SCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCC
T ss_pred cCCCcEEEEECCCcEEEEeCCC-CC--ceeECC---CCCC---CccceeEECCCCCEEEEeCCceEEEecCCCCCeeEec
Confidence 9998877766544333444421 11 011221 1222 5788999999998888788888887753334433322
Q ss_pred cCC--CCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEE
Q 004924 608 VPD--KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 685 (723)
Q Consensus 608 ~~~--~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 685 (723)
... .+...+.++++.+++..++++. +|.| ++....|+--..+.... +. ...++ ++.|.+ + ..+++++
T Consensus 242 ~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~----~~-~~~~~--~v~~~~-~-~~~~~~G 310 (327)
T 2xbg_A 242 LSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVK----KV-PSNFY--KILFFS-P-DQGFILG 310 (327)
T ss_dssp BCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGT----TS-SSCCC--EEEEEE-T-TEEEEEC
T ss_pred cCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccC----CC-CCCeE--EEEEEC-C-CceEEEc
Confidence 211 1234588999998877666654 6766 44555554333332110 00 12344 788875 4 4566777
Q ss_pred CCCcEEEEec
Q 004924 686 TNGRVHVIEP 695 (723)
Q Consensus 686 ~Dg~v~iWd~ 695 (723)
.+|.|.-++-
T Consensus 311 ~~G~i~~~~~ 320 (327)
T 2xbg_A 311 QKGILLRYVT 320 (327)
T ss_dssp STTEEEEECC
T ss_pred CCceEEEEcC
Confidence 8997766553
No 263
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.42 E-value=0.00013 Score=75.31 Aligned_cols=247 Identities=11% Similarity=0.001 Sum_probs=146.2
Q ss_pred CceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCC-------CCCCCeEEEEE
Q 004924 375 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA-------DPKDSISCFAL 447 (723)
Q Consensus 375 ~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~V~~v~~ 447 (723)
....+++|.++|+.+.++..++.|..|+..+... ..|.............+ .....+.++++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~ 87 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-----------VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISY 87 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-----------EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-----------EEEecccccccccccccccchhccccCCCCceEEE
Confidence 4556789999999778888889998887653211 11111000000000000 01134678888
Q ss_pred e--CCEEEEEe-CCcEEEEEcCCCcEEEEEeC-----CCCCeEEEEEcC-CC-eEEEEEC-----------------CCc
Q 004924 448 R--GSHLFSAS-GGKISIFSLETFQTLATFAN-----PPPIATYFILLP-QD-LFAFGFD-----------------DSS 500 (723)
Q Consensus 448 s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~-----~~~~v~~l~~~p-~~-~l~sgs~-----------------dg~ 500 (723)
. +..|+.+. .+.|..+|..++.. ..+.. .......+++.+ +| ..++-.. ++.
T Consensus 88 ~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 88 NLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp ETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred cCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCce
Confidence 7 46677776 66688888776542 22221 123467899999 88 4443321 367
Q ss_pred EEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEc
Q 004924 501 ILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 579 (723)
Q Consensus 501 I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~-s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~s 579 (723)
|..||..+++......+ ....+.++++|+|+.|+++ +..+.|.+|++.+........+. . .+ + ...+++.
T Consensus 167 v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~---~--~~--g-P~gi~~d 237 (322)
T 2fp8_A 167 LIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV---K--IP--N-PGNIKRN 237 (322)
T ss_dssp EEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE---E--CS--S-EEEEEEC
T ss_pred EEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE---e--CC--C-CCCeEEC
Confidence 89999877754332221 2334678999999876655 55689999998753211111111 1 11 3 6789999
Q ss_pred cCCCEEEEE-c----------CCcEEEEECCCCceeEEecCCCC--CCCeEEEEEeeCCcEEEEEeCCCcEEEEECCC
Q 004924 580 PDQIHLLSI-H----------EGQIDVYEAPTLNHTSQLVPDKM--DLPITYATYSCDGKCIYVSCKSGHVKVFDTST 644 (723)
Q Consensus 580 pdg~~l~~s-~----------dg~I~vwd~~~~~~~~~~~~~~h--~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~ 644 (723)
++|.+.++. . .+.|..+|. .++.+..+..... ...++.+++ .++.+.++...++.|..+++..
T Consensus 238 ~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 238 ADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 999877764 3 367888887 4777766653211 234666666 4666666666678888888753
No 264
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=98.40 E-value=2.2e-07 Score=73.49 Aligned_cols=55 Identities=18% Similarity=0.342 Sum_probs=45.3
Q ss_pred chHHHHHHHHHHhhhhhhHHHHHHHhhhcccccc--------chhhHHhhhcC-ChHHHHHHHh
Q 004924 127 TKEELIYLIHQFLNEEEFKETLHKLEQETRVFFD--------INYFREYITSG-EWDNAEKYLS 181 (723)
Q Consensus 127 ~~~evirlI~q~L~e~G~~~s~~~L~~Es~i~~~--------~~~l~~~i~~G-~w~~~~~~l~ 181 (723)
.++||++||++||+|.||.+||.+|+.||+|... ...|...|++| +|.+++..+.
T Consensus 4 tsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~~~~~~VppgaLVsllQKGL~Y~~~E~~~~ 67 (90)
T 2xtc_A 4 TSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISIN 67 (90)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSCCCGGGSCTTHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCccccccccCCcchHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999998762 56677777777 5666665554
No 265
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.31 E-value=0.0017 Score=66.78 Aligned_cols=203 Identities=8% Similarity=-0.024 Sum_probs=127.0
Q ss_pred CCCeEEEEEe--CCEEEEEe--CCcEEEEEcCC---CcE-EEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCC
Q 004924 439 KDSISCFALR--GSHLFSAS--GGKISIFSLET---FQT-LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT 508 (723)
Q Consensus 439 ~~~V~~v~~s--~~~l~s~s--dg~I~vwd~~~---~~~-~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~ 508 (723)
.....+++|+ ++.|+.+. ++.|..+++.. +.. ...+.........+++.+.+ .+++-...+.|.+++...
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 3457789998 56666665 68999999875 122 22233222345688888755 444555678999999875
Q ss_pred CcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEE
Q 004924 509 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD--AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 586 (723)
Q Consensus 509 ~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~d--g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~ 586 (723)
......+.........++++|.+..|+.+... +.|...++.... ...+..... .....++++|++..|+
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~------~~~~~~~~~---~~P~gla~d~~~~~lY 179 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD------IYSLVTENI---QWPNGITLDLLSGRLY 179 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC------EEEEECSSC---SCEEEEEEETTTTEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC------eEEEEECCC---CCceEEEEeccCCEEE
Confidence 44433333334567899999976666555543 688888886521 111111111 4678999999887777
Q ss_pred EE--cCCcEEEEECCCCceeEEecC-CCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEee
Q 004924 587 SI--HEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 652 (723)
Q Consensus 587 ~s--~dg~I~vwd~~~~~~~~~~~~-~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~ 652 (723)
.+ ..+.|..+|+.. .....+.. .........+++. .+..+++-...+.|..++..+|+....+.
T Consensus 180 ~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 180 WVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 64 567999999964 33333321 1123456778884 45555566667899999988887665553
No 266
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.30 E-value=0.00052 Score=70.20 Aligned_cols=223 Identities=11% Similarity=-0.030 Sum_probs=133.8
Q ss_pred CceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEE
Q 004924 375 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 452 (723)
Q Consensus 375 ~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l 452 (723)
.....++|+++|+.+++-..++.|..|+..+. .. ..|. .......+++. |+++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~------~~-----~~~~--------------~~~~p~gia~~~dG~l~ 86 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN------QQ-----IHAT--------------VEGKVSGLAFTSNGDLV 86 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC------EE-----EEEE--------------CSSEEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc------eE-----EEEe--------------CCCCceeEEEcCCCcEE
Confidence 45678999999996666556788888775421 10 1121 12357788888 6655
Q ss_pred EEEe-CC--cEEEEEcCCCcEEEEEeC-CCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcE-EEEEc---------C
Q 004924 453 FSAS-GG--KISIFSLETFQTLATFAN-PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLK---------G 517 (723)
Q Consensus 453 ~s~s-dg--~I~vwd~~~~~~~~~~~~-~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~-~~~l~---------~ 517 (723)
++.. .. .|..++..+++....... .......++..+++ .+++-..++.|+.+|..+++. +.... +
T Consensus 87 vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~ 166 (306)
T 2p4o_A 87 ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES 166 (306)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred EEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccC
Confidence 5443 32 477777777775443322 22233455555555 455544688999999876532 21111 1
Q ss_pred cCCcEEEEEEcCCCCEEEEEe-CCCcEEEEeCCC-CceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEE
Q 004924 518 HQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQID 594 (723)
Q Consensus 518 ~~~~i~~l~~spdg~~l~s~s-~dg~I~vwd~~~-~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~ 594 (723)
.-...+.+ +|+++.|+.+. ..+.|..||+.. +.......+. .. .....++++++|.+.++ ...+.|.
T Consensus 167 ~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~---~~-----~~P~gi~vd~dG~l~va~~~~~~V~ 236 (306)
T 2p4o_A 167 VFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV---EQ-----TNIDDFAFDVEGNLYGATHIYNSVV 236 (306)
T ss_dssp CSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE---ES-----CCCSSEEEBTTCCEEEECBTTCCEE
T ss_pred CCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe---cc-----CCCCCeEECCCCCEEEEeCCCCeEE
Confidence 11234555 78887665554 567899999875 3221111111 11 23557899999987666 3678999
Q ss_pred EEECCCCceeE--EecCCCCCCCeEEEEEe---eCCcEEEEEeCCC
Q 004924 595 VYEAPTLNHTS--QLVPDKMDLPITYATYS---CDGKCIYVSCKSG 635 (723)
Q Consensus 595 vwd~~~~~~~~--~~~~~~h~~~v~~l~~s---pdg~~l~sgs~dg 635 (723)
++|.. ++... .+.. .....++++|. |+++.|++++..+
T Consensus 237 ~~~~~-G~~~~~~~~~~--~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 237 RIAPD-RSTTIIAQAEQ--GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EECTT-CCEEEEECGGG--TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred EECCC-CCEEEEeeccc--ccCCceEEEEecccCCCCEEEEECCCC
Confidence 99975 65532 2322 14668999998 8988777766543
No 267
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.28 E-value=0.00099 Score=69.55 Aligned_cols=227 Identities=11% Similarity=-0.014 Sum_probs=140.8
Q ss_pred CCEEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEE-EEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEE
Q 004924 449 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 526 (723)
Q Consensus 449 ~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~-sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~ 526 (723)
..+|+.+....|+..++........... ...+..++|++.+ .|+ +-...+.|..+++..+.....+.........++
T Consensus 44 ~~~ll~~~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gla 122 (349)
T 3v64_C 44 EPVLLFANRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLA 122 (349)
T ss_dssp CCEEEEECBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred CceeEeecccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEE
Confidence 4455555566688888865554443333 3457799999766 444 445678899999887654444443334557889
Q ss_pred EcCCCCEE-EEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE--cC-CcEEEEECCCCc
Q 004924 527 YSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQIDVYEAPTLN 602 (723)
Q Consensus 527 ~spdg~~l-~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s--~d-g~I~vwd~~~~~ 602 (723)
+.+.+..| ++-...+.|.+.++.+.. ...+..... .....++++|.+..|+.+ .. +.|..+++.. .
T Consensus 123 vd~~~g~ly~~d~~~~~I~~~~~dG~~------~~~l~~~~l---~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-~ 192 (349)
T 3v64_C 123 VDWVHDKLYWTDSGTSRIEVANLDGAH------RKVLLWQSL---EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-S 192 (349)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCS------CEEEECTTC---SCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-C
T ss_pred EecCCCeEEEEcCCCCeEEEEcCCCCc------eEEEEeCCC---CCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-C
Confidence 98855554 455557889999987632 111122222 467899999977666653 44 7899999854 3
Q ss_pred eeEEecCCCCCCCeEEEEEeeCCcEEEEEe-CCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEE
Q 004924 603 HTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 681 (723)
Q Consensus 603 ~~~~~~~~~h~~~v~~l~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~l 681 (723)
....+.. ........++++|++..|+.+. ..+.|..+++........+.. ..-.+..+++. ++.+.
T Consensus 193 ~~~~~~~-~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~----------~~~~P~giav~--~~~ly 259 (349)
T 3v64_C 193 GRRIIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ----------GLPHPFAITVF--EDSLY 259 (349)
T ss_dssp SCEESCC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----------SCSSEEEEEEE--TTEEE
T ss_pred CcEEEEE-CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeC----------CCCCceEEEEE--CCEEE
Confidence 3333322 1245678999998777666554 457899999875443322221 01124466663 35555
Q ss_pred EEEECCCcEEEEecCCCc
Q 004924 682 ALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 682 as~s~Dg~v~iWd~~~~~ 699 (723)
.+-...+.|..++..+|+
T Consensus 260 ~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 260 WTDWHTKSINSANKFTGK 277 (349)
T ss_dssp EEETTTTEEEEEETTTCC
T ss_pred EecCCCCeEEEEEccCCC
Confidence 665567788888755554
No 268
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.28 E-value=0.0019 Score=67.40 Aligned_cols=201 Identities=8% Similarity=-0.051 Sum_probs=129.6
Q ss_pred CCeEEEEEe--CCEEEEEe--CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEEE
Q 004924 440 DSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA 513 (723)
Q Consensus 440 ~~V~~v~~s--~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~ 513 (723)
..+..++|+ ++.|+.+. .+.|..+++..+.....+.........+++.+.+ .+++-...+.|.+.+++......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 447789998 56666555 6889999987665444443333445688888765 44555567789999987554433
Q ss_pred EEcCcCCcEEEEEEcCCCCEEEEEe-CC-CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE--c
Q 004924 514 KLKGHQNRITCLAYSLSLNVLVSSG-AD-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H 589 (723)
Q Consensus 514 ~l~~~~~~i~~l~~spdg~~l~s~s-~d-g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s--~ 589 (723)
.+...-.....++++|.+..|+... .. +.|..+++.... ...+..... .....++++|++..|+.+ .
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~------~~~~~~~~~---~~PnGla~d~~~~~lY~aD~~ 223 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG------RRIIADTHL---FWPNGLTIDYAGRRMYWVDAK 223 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS------CEESCCSSC---SCEEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC------cEEEEECCC---CCcceEEEeCCCCEEEEEECC
Confidence 3443445678999999665555544 44 778888887631 111111111 467899999988777764 5
Q ss_pred CCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEee
Q 004924 590 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 652 (723)
Q Consensus 590 dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~ 652 (723)
.+.|..+|+.... ...+... .......+++ .++...++-...+.|..++..+|+....+.
T Consensus 224 ~~~I~~~~~dG~~-~~~~~~~-~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 224 HHVIERANLDGSH-RKAVISQ-GLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TTEEEEEETTSCS-CEEEECS-SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEeCCCCc-eEEEEeC-CCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 6789999986433 2333221 2455678888 455555566667889888877776655554
No 269
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.27 E-value=0.0012 Score=67.80 Aligned_cols=227 Identities=11% Similarity=-0.033 Sum_probs=139.7
Q ss_pred EEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEE-EEECCCcEEEEeCCC----CcEEEEEcCcCCcEEE
Q 004924 451 HLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCT----KKTKAKLKGHQNRITC 524 (723)
Q Consensus 451 ~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~-sgs~dg~I~iwd~~~----~~~~~~l~~~~~~i~~ 524 (723)
+|+.+....|+..|+.+.+....+. ....+..++|++.+ .++ +-..++.|..+++.+ ......+...-.....
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEECCCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 4555666779999998776655443 34567799999876 444 445568999999876 2222233322245578
Q ss_pred EEEcCCCCEE-EEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E-cC-CcEEEEECCC
Q 004924 525 LAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HE-GQIDVYEAPT 600 (723)
Q Consensus 525 l~~spdg~~l-~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~d-g~I~vwd~~~ 600 (723)
+++++.+..| ++-...+.|.++|..+... ..+..... .....++++|.+..|+. . .. +.|..+++.
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~------~~~~~~~~---~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d- 151 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKR------KTLFRENG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN- 151 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSE------EEEEECTT---CCEEEEEEETTTTEEEEEECSSSCEEEEEETT-
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCCce------EEEEECCC---CCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-
Confidence 8998755554 4545678999999876321 11111111 46789999997766665 3 33 689999884
Q ss_pred CceeEEecCCCCCCCeEEEEEeeCCcEEEEEe-CCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCC
Q 004924 601 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 679 (723)
Q Consensus 601 ~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~ 679 (723)
|.....+.. ........++++|++..|+.+. ..+.|..+|+............ ...-.+..+++. .+.
T Consensus 152 G~~~~~~~~-~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~--------~~~~~P~giav~--~~~ 220 (316)
T 1ijq_A 152 GVDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE--------KRLAHPFSLAVF--EDK 220 (316)
T ss_dssp SCCEEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT--------TTTSSEEEEEEE--TTE
T ss_pred CCCeEEEEE-CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecC--------CccCCcEEEEEE--CCE
Confidence 444444322 1245688999999877776555 4578999998754332222210 011124466664 355
Q ss_pred EEEEEECCCcEEEEecCCCc
Q 004924 680 RIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 680 ~las~s~Dg~v~iWd~~~~~ 699 (723)
++++....+.|..++..+++
T Consensus 221 ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 221 VFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEEEETTTTEEEEEETTTCC
T ss_pred EEEEECCCCeEEEEeCCCCc
Confidence 66666677888888876664
No 270
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.26 E-value=0.00066 Score=72.01 Aligned_cols=227 Identities=11% Similarity=-0.020 Sum_probs=141.7
Q ss_pred CCEEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEE
Q 004924 449 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 526 (723)
Q Consensus 449 ~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~ 526 (723)
..+|+.+....|+.+++..+....... ....+..++|++.+ .+++-...+.|..+++..+.....+.........++
T Consensus 87 ~~~l~~~~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gla 165 (386)
T 3v65_B 87 EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLA 165 (386)
T ss_dssp CCEEEEECBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEE
T ss_pred cceeEeecCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEE
Confidence 445665566778888887655544443 34457799999766 444545677899999887654444443334456788
Q ss_pred EcCCCCEE-EEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE--cC-CcEEEEECCCCc
Q 004924 527 YSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQIDVYEAPTLN 602 (723)
Q Consensus 527 ~spdg~~l-~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s--~d-g~I~vwd~~~~~ 602 (723)
+++.+..| ++-...+.|.+.++.+.. ...+..... .....++++|.+..|+.+ .. +.|..+++...
T Consensus 166 vd~~~g~lY~~d~~~~~I~~~~~dg~~------~~~l~~~~l---~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~- 235 (386)
T 3v65_B 166 VDWVHDKLYWTDSGTSRIEVANLDGAH------RKVLLWQSL---EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS- 235 (386)
T ss_dssp EETTTTEEEEEETTTTEEEECBTTSCS------CEEEECSSC---SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-
T ss_pred EEeCCCeEEEEcCCCCeEEEEeCCCCc------eEEeecCCC---CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-
Confidence 88755554 444556788888887532 111122222 467899999987777654 34 78999998543
Q ss_pred eeEEecCCCCCCCeEEEEEeeCCcEEEEEe-CCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEE
Q 004924 603 HTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 681 (723)
Q Consensus 603 ~~~~~~~~~h~~~v~~l~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~l 681 (723)
....+.. ........++|+|++..|+.+. ..+.|..+++........+.. ..-.+..+++. .+.++
T Consensus 236 ~~~~~~~-~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~----------~~~~P~giav~--~~~ly 302 (386)
T 3v65_B 236 GRRIIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ----------GLPHPFAITVF--EDSLY 302 (386)
T ss_dssp SCEEEEC-SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECS----------SCSSEEEEEEE--TTEEE
T ss_pred CcEEEEE-CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEEC----------CCCCceEEEEE--CCEEE
Confidence 3333322 1245678999998777666554 457899999875443332221 11124467763 35566
Q ss_pred EEEECCCcEEEEecCCCc
Q 004924 682 ALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 682 as~s~Dg~v~iWd~~~~~ 699 (723)
.+....+.|..++..+|+
T Consensus 303 ~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 303 WTDWHTKSINSANKFTGK 320 (386)
T ss_dssp EEETTTTEEEEEETTTCC
T ss_pred EeeCCCCeEEEEECCCCc
Confidence 666677888888865654
No 271
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.25 E-value=0.00059 Score=69.78 Aligned_cols=228 Identities=9% Similarity=-0.006 Sum_probs=133.6
Q ss_pred CCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECC-C-cEEEEeCCCCcEEE
Q 004924 440 DSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD-S-SILVHCPCTKKTKA 513 (723)
Q Consensus 440 ~~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~d-g-~I~iwd~~~~~~~~ 513 (723)
.....++|+ ++++++.. ++.|..||... +....+. ....+..+++.++| .+++.... + .|..+|..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 456788998 66555554 78999999865 3333333 23467899999999 55544432 2 47777877777543
Q ss_pred EEcC-cCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeec--ee-eee-eecCCCCCCCCeEEEEEccCCCEEEEE
Q 004924 514 KLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS--KF-LHS-FQTGLVPETTIVNHIQFHPDQIHLLSI 588 (723)
Q Consensus 514 ~l~~-~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~--~~-l~~-~~~~~~~~~~~v~~l~~spdg~~l~~s 588 (723)
.... .......++..+++..+++-..++.|.++|..++..... .. +.. ...... .....+ +|+++.++++
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~---~~pngi--s~dg~~lyv~ 184 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF---PAANGL--KRFGNFLYVS 184 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS---CSEEEE--EEETTEEEEE
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC---CcCCCc--CcCCCEEEEE
Confidence 3321 122334555555554455444688999999875421000 00 000 000111 234455 8888887764
Q ss_pred --cCCcEEEEECCC-Cce--eEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCcc
Q 004924 589 --HEGQIDVYEAPT-LNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS 663 (723)
Q Consensus 589 --~dg~I~vwd~~~-~~~--~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~ 663 (723)
..+.|++||+.. ++. ...+.. ......++++++|++.++....+.|.+++.. |+........ .
T Consensus 185 d~~~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~--------~ 252 (306)
T 2p4o_A 185 NTEKMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE--------Q 252 (306)
T ss_dssp ETTTTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG--------G
T ss_pred eCCCCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc--------c
Confidence 567999999864 321 112211 1234578999999887777778899999975 6543221111 1
Q ss_pred CccceEEEEEe---cCCCCEEEEEECC
Q 004924 664 LELYPLVIAAH---PLEPNRIALGLTN 687 (723)
Q Consensus 664 ~~v~~~~v~~s---p~d~~~las~s~D 687 (723)
..-.+++++|. | +++.|..++..
T Consensus 253 ~~~~p~~~a~~g~~~-d~~~LyVt~~~ 278 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEG-DCTAIYVVTNG 278 (306)
T ss_dssp TCTTEEEEEECCSTT-TTTEEEEEECT
T ss_pred ccCCceEEEEecccC-CCCEEEEECCC
Confidence 11235689998 7 66666655544
No 272
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.22 E-value=0.0013 Score=69.77 Aligned_cols=202 Identities=8% Similarity=-0.059 Sum_probs=131.0
Q ss_pred CCCeEEEEEe--CCEEEEEe--CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEE
Q 004924 439 KDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTK 512 (723)
Q Consensus 439 ~~~V~~v~~s--~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~ 512 (723)
......++|. ++.|+.+. .+.|..+++..+.....+.........+++.+.+ .+++-...+.|.+.++......
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~ 194 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 194 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence 3457789998 56666555 6889999988665444443333345578888765 4455556778999998755444
Q ss_pred EEEcCcCCcEEEEEEcCCCCEEEEEeC-C-CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE--
Q 004924 513 AKLKGHQNRITCLAYSLSLNVLVSSGA-D-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-- 588 (723)
Q Consensus 513 ~~l~~~~~~i~~l~~spdg~~l~s~s~-d-g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-- 588 (723)
..+...-.....++++|.+..|+.+.. . +.|..+++.... ...+..... .....++++|++..|+.+
T Consensus 195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~------~~~~~~~~~---~~PnGlavd~~~~~lY~aD~ 265 (386)
T 3v65_B 195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG------RRIIADTHL---FWPNGLTIDYAGRRMYWVDA 265 (386)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS------CEEEECSSC---SCEEEEEEEGGGTEEEEEET
T ss_pred EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC------cEEEEECCC---CCeeeEEEeCCCCEEEEEEC
Confidence 444444456789999997766655543 3 678888887521 111111111 457899999887777764
Q ss_pred cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEee
Q 004924 589 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 652 (723)
Q Consensus 589 ~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~ 652 (723)
..+.|..+|+..... ..+... .......+++ ..+..+++-...+.|..++..+|+....+.
T Consensus 266 ~~~~I~~~d~dG~~~-~~~~~~-~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 266 KHHVIERANLDGSHR-KAVISQ-GLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TTTEEEEECTTSCSC-EEEECS-SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCEEEEEeCCCCee-EEEEEC-CCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 667899999864332 333221 2455678888 455555666667889999977777666664
No 273
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.20 E-value=0.0016 Score=64.23 Aligned_cols=219 Identities=10% Similarity=-0.005 Sum_probs=132.0
Q ss_pred EEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEEEEEcC-cCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 004924 473 TFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 549 (723)
Q Consensus 473 ~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~~l~~-~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~ 549 (723)
.+.+-...+..++|+|++ .+++...++.|...|.. ++.++.+.- -......+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 344556679999999987 55567788899999988 888877742 23568889999988776766677889999887
Q ss_pred CCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCC--cEEEEEC-CCCceeEEe-----cCCCCCCCeEEEE
Q 004924 550 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--QIDVYEA-PTLNHTSQL-----VPDKMDLPITYAT 620 (723)
Q Consensus 550 ~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg--~I~vwd~-~~~~~~~~~-----~~~~h~~~v~~l~ 620 (723)
............+.....+.......++|+|.+..|.++ ... .|+.|+- .....+... ....+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 643211111111111111111567899999999777764 333 4555551 011112211 1111244678999
Q ss_pred EeeCC-cEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecC
Q 004924 621 YSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 621 ~spdg-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~ 696 (723)
++|.. .+++.......|.++|.. |+.+..+....-. .|-...--..-.+++.| +|++.++ ++.+.++++...
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~-~~l~~~~~qpEGia~d~-~G~lyIv-sE~n~~y~f~~~ 252 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGS-RGLSHNIKQAEGVAMDA-SGNIYIV-SEPNRFYRFTPQ 252 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTG-GGCSSCCCSEEEEEECT-TCCEEEE-ETTTEEEEEEC-
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCcc-CCcccccCCCCeeEECC-CCCEEEE-cCCceEEEEEec
Confidence 99865 455556667889999966 5566666543100 00000011245899999 8875555 677766666543
No 274
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.19 E-value=0.0034 Score=66.77 Aligned_cols=205 Identities=9% Similarity=-0.048 Sum_probs=131.3
Q ss_pred CCCCeEEEEEe--CCEEEEEe--CCcEEEEEcCCC----cEEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCC
Q 004924 438 PKDSISCFALR--GSHLFSAS--GGKISIFSLETF----QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPC 507 (723)
Q Consensus 438 h~~~V~~v~~s--~~~l~s~s--dg~I~vwd~~~~----~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~ 507 (723)
....+..++|+ ++.|+.+. .+.|..+++... .....+.........+++.+.+ .+++-...+.|.+.+++
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 34567889998 66666665 688999988652 2333333344567789998854 55555567899999988
Q ss_pred CCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEE
Q 004924 508 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 585 (723)
Q Consensus 508 ~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~--dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l 585 (723)
.......+...-.....++++|.+..|+.... .+.|...++..... ..+..... .....+++++++..|
T Consensus 190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~------~~~~~~~l---~~P~glavd~~~~~l 260 (400)
T 3p5b_L 190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------YSLVTENI---QWPNGITLDLLSGRL 260 (400)
T ss_dssp TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC------EEEECSSC---SCEEEEEEETTTTEE
T ss_pred CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc------EEEEECCC---CceEEEEEEeCCCEE
Confidence 66554444444456789999997666665553 37888888876321 11211211 467899999988888
Q ss_pred EEE--cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEee
Q 004924 586 LSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 652 (723)
Q Consensus 586 ~~s--~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~ 652 (723)
+.+ ..+.|..+|+....................+++ ..+..+++-...+.|..++..+|+.+..+.
T Consensus 261 Y~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 261 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 764 567899999864433222222122345567776 344455555667889999988887666654
No 275
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.15 E-value=0.0034 Score=66.77 Aligned_cols=230 Identities=11% Similarity=-0.016 Sum_probs=143.1
Q ss_pred CCEEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEE-ECCCcEEEEeCCCC----cEEEEEcCcCCcE
Q 004924 449 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG-FDDSSILVHCPCTK----KTKAKLKGHQNRI 522 (723)
Q Consensus 449 ~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sg-s~dg~I~iwd~~~~----~~~~~l~~~~~~i 522 (723)
..+|+.+....|+..++......... .....+..++|++.+ .|+.. ...+.|+.+++... .....+.......
T Consensus 83 ~~~ll~~~~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 83 IAYLFFTNRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp SCEEEEEETTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred cceeEEeccceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 34566666788888888766554444 334567799999866 55444 45678999998752 2333344344567
Q ss_pred EEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE---cCCcEEEEEC
Q 004924 523 TCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEA 598 (723)
Q Consensus 523 ~~l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s---~dg~I~vwd~ 598 (723)
..+++.+.+ +..++-...+.|.+.++++... ..+..... .....+++.|.+..|+.+ ..+.|...++
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~------~~l~~~~~---~~P~~iavdp~~g~ly~td~~~~~~I~~~~~ 232 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------KTLFRENG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 232 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSE------EEEEECSS---CCEEEEEEETTTTEEEEEECSSSCCEEEEET
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCce------EEEEeCCC---CCcceEEEecccCeEEEEeCCCCCEEEEEeC
Confidence 889999844 4445555678899999886321 11222121 467899999977666653 2478999998
Q ss_pred CCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEe-CCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCC
Q 004924 599 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 677 (723)
Q Consensus 599 ~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d 677 (723)
.. .....+.. ..-.....+++++++..|+.+. ..+.|..+|+............ ..--.+.+++.. .
T Consensus 233 dG-~~~~~~~~-~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--------~~l~~P~gl~v~--~ 300 (400)
T 3p5b_L 233 NG-VDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE--------KRLAHPFSLAVF--E 300 (400)
T ss_dssp TS-CSCEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECS--------STTSSEEEEEEE--T
T ss_pred CC-CccEEEEE-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCC--------CCCCCCEEEEEe--C
Confidence 54 33333322 1246788999998887777664 4578999998765433333211 011124466663 3
Q ss_pred CCEEEEEECCCcEEEEecCCCce
Q 004924 678 PNRIALGLTNGRVHVIEPLESEV 700 (723)
Q Consensus 678 ~~~las~s~Dg~v~iWd~~~~~~ 700 (723)
+.++.+....+.|..++..+|+.
T Consensus 301 ~~lywtd~~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 301 DKVFWTDIINEAIFSANRLTGSD 323 (400)
T ss_dssp TEEEEEESSSCSEEEEESSSCCC
T ss_pred CEEEEecCCCCeEEEEEcCCCCc
Confidence 45666666778888888766643
No 276
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.09 E-value=0.00012 Score=83.60 Aligned_cols=269 Identities=8% Similarity=0.014 Sum_probs=145.0
Q ss_pred ccCC-CCCEEEEEeCCC-----------eEEEEeecccCCCCceeEE-ecCCCCCCCceEEEEEeCCCCEEEEEEC-CCc
Q 004924 332 TSLP-DADSAVCAKSLE-----------KSVNLKLQLINEPSECRTL-LLPDNSFGGRVVRLIYSHSGDFLVALTQ-TAT 397 (723)
Q Consensus 332 ~~sp-dg~~la~~s~dg-----------~v~iw~~~~~~~~~~~~~~-~l~~~~h~~~V~~l~fspdg~~las~s~-dg~ 397 (723)
...| +|+.++.|+.++ .+.+||.... ....+ .++. .+.....++++.++|+.++.|+. ++.
T Consensus 192 av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~----~w~~~~~~~~-~~~~~~~~~~~~~~g~lyv~GG~~~~~ 266 (656)
T 1k3i_A 192 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTG----IVSDRTVTVT-KHDMFCPGISMDGNGQIVVTGGNDAKK 266 (656)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTC----CBCCCEEEEC-SCCCSSCEEEECTTSCEEEECSSSTTC
T ss_pred EEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCC----cEEeCcccCC-CCCCccccccCCCCCCEEEeCCCCCCc
Confidence 3566 888999987643 4678887742 22211 1221 13333445788899999999985 457
Q ss_pred EEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEe--C-----CcEEEEEcCCCc
Q 004924 398 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS--G-----GKISIFSLETFQ 469 (723)
Q Consensus 398 i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~s--d-----g~I~vwd~~~~~ 469 (723)
+.+||..+.. |..... +. .......++... |+.++.|+ + ..+.+||..+++
T Consensus 267 v~~yd~~t~~--------------W~~~~~--~~-----~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 267 TSLYDSSSDS--------------WIPGPD--MQ-----VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEEEEGGGTE--------------EEECCC--CS-----SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred eEEecCcCCc--------------eeECCC--CC-----ccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 8888866432 322110 00 111222333443 77777776 3 469999998876
Q ss_pred EEEEE-----eCCCCCeEEEEEcCCC-eEEEEECCC---------cEEEEeCCCCcEEEEEcCcCC---------cEEEE
Q 004924 470 TLATF-----ANPPPIATYFILLPQD-LFAFGFDDS---------SILVHCPCTKKTKAKLKGHQN---------RITCL 525 (723)
Q Consensus 470 ~~~~~-----~~~~~~v~~l~~~p~~-~l~sgs~dg---------~I~iwd~~~~~~~~~l~~~~~---------~i~~l 525 (723)
....- ......- ...+..++ .++.|+.+| .+..||..+.........+.. .-.++
T Consensus 326 W~~~~~~~~~p~~~~~~-~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av 404 (656)
T 1k3i_A 326 WTSLPNAKVNPMLTADK-QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 404 (656)
T ss_dssp EEEETTSCSGGGCCCCT-TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred ceeCCCccccccccccc-cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence 44320 0000000 01122444 445554443 567888887664433322211 22344
Q ss_pred EEcC-CCCEEEEEeCCC-----------cEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcC--
Q 004924 526 AYSL-SLNVLVSSGADA-----------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-- 590 (723)
Q Consensus 526 ~~sp-dg~~l~s~s~dg-----------~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~d-- 590 (723)
.+.. +++.++.|+.++ .+.+||..+..-.... ...++.. ..-.+++..|+++.++. |.+
T Consensus 405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~-----R~~~~~~~l~~g~i~v~GG~~~~ 478 (656)
T 1k3i_A 405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFA-----RTFHTSVVLPDGSTFITGGQRRG 478 (656)
T ss_dssp EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSC-----CBSCEEEECTTSCEEEECCBSBC
T ss_pred eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCC-----cccCCeEECCCCCEEEECCcccC
Confidence 4543 677888887543 5778887764311100 0012221 12235567789998888 432
Q ss_pred ---------CcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeC
Q 004924 591 ---------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 633 (723)
Q Consensus 591 ---------g~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~ 633 (723)
..+.+||..+.+....-...........+.+.|||+.++.|+.
T Consensus 479 ~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 479 IPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999977654321111111222334556789999999985
No 277
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.09 E-value=0.00019 Score=83.31 Aligned_cols=152 Identities=11% Similarity=0.067 Sum_probs=82.8
Q ss_pred EEEEcCCC-eEEEEECC-----CcEEEEeCCCCcE--EEEEc-CcCCcEEEEEEcCCCCEEEEEeC---CCcEEEEeCCC
Q 004924 483 YFILLPQD-LFAFGFDD-----SSILVHCPCTKKT--KAKLK-GHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAVG 550 (723)
Q Consensus 483 ~l~~~p~~-~l~sgs~d-----g~I~iwd~~~~~~--~~~l~-~~~~~i~~l~~spdg~~l~s~s~---dg~I~vwd~~~ 550 (723)
.++|+||| .|+....+ ..|+.+++.++.. ...+. ........+.|+|||++|+..+. ...|.++|+.+
T Consensus 225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 56899999 66655554 2688888887642 23333 23345668899999999887663 34588889877
Q ss_pred CceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEE-EE-cC----CcEEEEECCCCceeEE-ecCCCCCCCeEEEEEee
Q 004924 551 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL-SI-HE----GQIDVYEAPTLNHTSQ-LVPDKMDLPITYATYSC 623 (723)
Q Consensus 551 ~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~-~s-~d----g~I~vwd~~~~~~~~~-~~~~~h~~~v~~l~~sp 623 (723)
+.... .+..+..... ....++.|+. |..|+ .+ .+ ..|..+|+.++..... +........+..+.+
T Consensus 305 ~~~~~--~~~~l~~~~~---~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~-- 376 (751)
T 2xe4_A 305 GNAHN--TLEIVRPREK---GVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV-- 376 (751)
T ss_dssp CTTCC--CEEESSCCCT---TCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--
T ss_pred CCCCc--eeEEeecCCC---CceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--
Confidence 42100 0021222222 3455555554 55444 45 32 2677788765322222 222111223444444
Q ss_pred CCcE-EEEEeCCCc--EEEEEC
Q 004924 624 DGKC-IYVSCKSGH--VKVFDT 642 (723)
Q Consensus 624 dg~~-l~sgs~dg~--I~iwd~ 642 (723)
++.. +++...+|. |+++++
T Consensus 377 ~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 377 RSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp CSSEEEEEEEETTEEEEEEEEC
T ss_pred ECCEEEEEEEeCCEEEEEEEec
Confidence 4544 456666775 555665
No 278
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.09 E-value=0.0015 Score=64.39 Aligned_cols=200 Identities=16% Similarity=0.102 Sum_probs=130.1
Q ss_pred CCCCCeEEEEEe--CCEEEEEe--CCcEEEEEcCCCcEEEEEe-CCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCc
Q 004924 437 DPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK 510 (723)
Q Consensus 437 ~h~~~V~~v~~s--~~~l~s~s--dg~I~vwd~~~~~~~~~~~-~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~ 510 (723)
+-...+..++|+ ++.|++.. ++.|...|.. ++.++.+. ......-.+++.+++ ++++.-.++.+.++++....
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence 455679999999 56666544 6889999987 88888875 223567788999888 65665567789999876543
Q ss_pred E---EEEEc------CcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeee-----e-cCCCCCCCCeEE
Q 004924 511 T---KAKLK------GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF-----Q-TGLVPETTIVNH 575 (723)
Q Consensus 511 ~---~~~l~------~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~-----~-~~~~~~~~~v~~ 575 (723)
. +.... ........++|+|++..|.++.......+|.++. .. ....+..+ . ..+. ..+.+
T Consensus 103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g-~~-~~~~l~i~~~~~~~~~~~~---~d~S~ 177 (255)
T 3qqz_A 103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG-LL-SSNELHISKDKALQRQFTL---DDVSG 177 (255)
T ss_dssp CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES-TT-CSSCCEEEECHHHHHTCCS---SCCCE
T ss_pred eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc-cc-cCCceeeecchhhcccccc---CCcee
Confidence 2 22221 1234568999999998888777665556665542 10 00111100 0 0111 46789
Q ss_pred EEEccCCCEEEE-E-cCCcEEEEECCCCceeEEecCCC--C-----CCCeEEEEEeeCCcEEEEEeCCCcEEEEECCC
Q 004924 576 IQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDK--M-----DLPITYATYSCDGKCIYVSCKSGHVKVFDTST 644 (723)
Q Consensus 576 l~~spdg~~l~~-s-~dg~I~vwd~~~~~~~~~~~~~~--h-----~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~ 644 (723)
++++|....+++ + ....+.++|.. |+.+..+.... + -...-.++|.++|+ |+..++.+.++.|....
T Consensus 178 l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~~ 253 (255)
T 3qqz_A 178 AEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQS 253 (255)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC--
T ss_pred EEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEecC
Confidence 999998766665 6 66789999974 66665554421 1 13578999999998 55557878887776543
No 279
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.06 E-value=0.00025 Score=81.02 Aligned_cols=233 Identities=11% Similarity=-0.000 Sum_probs=123.0
Q ss_pred eEEEEEe--CCEEEEEe--CCcEEEEEcCCCcEEEEEeCCCC-CeEEEEEcCCC-eEEEEE-CC-----CcEEEEeCCCC
Q 004924 442 ISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPP-IATYFILLPQD-LFAFGF-DD-----SSILVHCPCTK 509 (723)
Q Consensus 442 V~~v~~s--~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~~~-~v~~l~~~p~~-~l~sgs-~d-----g~I~iwd~~~~ 509 (723)
..++++. +..++.|+ ++.+.+||..+++....-..+.. .-.+++..+++ .++.|+ .+ ..+.+||..++
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 3345555 77788887 46899999987755433221111 12345666788 777777 34 47999999876
Q ss_pred cEEEEEcC-----cCCcEEEEEEcCCCCEEEEEeCCC---------cEEEEeCCCCceeeceeeeeeecCC--CCCCCCe
Q 004924 510 KTKAKLKG-----HQNRITCLAYSLSLNVLVSSGADA---------QLCVWDAVGWKKLCSKFLHSFQTGL--VPETTIV 573 (723)
Q Consensus 510 ~~~~~l~~-----~~~~i~~l~~spdg~~l~s~s~dg---------~I~vwd~~~~~~~~~~~l~~~~~~~--~~~~~~v 573 (723)
+... +.. ....-....+..++...+.++.+| .+..||..+..-.. .......++ .+....-
T Consensus 325 ~W~~-~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~--~~~~~~~~~~~~~~~~~~ 401 (656)
T 1k3i_A 325 TWTS-LPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK--SAGKRQSNRGVAPDAMCG 401 (656)
T ss_dssp EEEE-ETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE--EEEECEETTEECCCCBTC
T ss_pred ccee-CCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee--cCCccccccccCCCCCCC
Confidence 5433 210 000000011234555555665444 46778887643211 111111100 0000123
Q ss_pred EEEEEcc-CCCEEEEE-cCC-----------cEEEEECCCCceeEEe-cCCCCCCCeEEEEEeeCCcEEEEEeCC-----
Q 004924 574 NHIQFHP-DQIHLLSI-HEG-----------QIDVYEAPTLNHTSQL-VPDKMDLPITYATYSCDGKCIYVSCKS----- 634 (723)
Q Consensus 574 ~~l~~sp-dg~~l~~s-~dg-----------~I~vwd~~~~~~~~~~-~~~~h~~~v~~l~~spdg~~l~sgs~d----- 634 (723)
.++.+.. +++.++.| .++ .|.+||..+....... ........-.+++..|+++.++.|+.+
T Consensus 402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~ 481 (656)
T 1k3i_A 402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF 481 (656)
T ss_dssp EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence 3455544 56666663 322 6788888776654332 011112223355667899999998864
Q ss_pred ------CcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEEC
Q 004924 635 ------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 686 (723)
Q Consensus 635 ------g~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~ 686 (723)
..+.+||..+.+-.. +... + ....+..+....| ++++++.||.
T Consensus 482 ~~~~~~~~v~~ydp~t~~W~~-~~~~---~----~~R~~hs~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 482 EDSTPVFTPEIYVPEQDTFYK-QNPN---S----IVRVYHSISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp CCCSBCCCCEEEEGGGTEEEE-CCCC---S----SCCCTTEEEEECT-TSCEEEEECC
T ss_pred CCCCcccceEEEcCCCCceee-cCCC---C----CccccccHhhcCC-CcEEEecCCC
Confidence 568999998765332 2111 0 0111112344567 8899999885
No 280
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.95 E-value=0.0023 Score=68.87 Aligned_cols=245 Identities=11% Similarity=-0.032 Sum_probs=143.7
Q ss_pred CeEEEEEe-C---CEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECC---C-cEEEEeCCCCc
Q 004924 441 SISCFALR-G---SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---S-SILVHCPCTKK 510 (723)
Q Consensus 441 ~V~~v~~s-~---~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~d---g-~I~iwd~~~~~ 510 (723)
....++|+ . ..|+.+. .+.|+.+|..+++.... .........++++++| .+++...+ . .+...+...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 45578887 3 6777776 68899999987765543 3445568899999999 55554322 1 23333332221
Q ss_pred E-EEEEcCcCCcEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE
Q 004924 511 T-KAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI 588 (723)
Q Consensus 511 ~-~~~l~~~~~~i~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s 588 (723)
. ...+. .-.....++++| +|...++-..++.|+.+|..++.... .+. ..+.. .....++|+|+|++|+.+
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~--~~~--~~~~~---~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE--EEV--MMDTK---GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE--EEE--ECSCC---SSCEEEEECTTSSEEEEE
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE--EEe--ccCCC---CCcccEEEeCCCCEEEEE
Confidence 1 01111 223446688999 67666665667889999988654311 111 11111 234579999999976664
Q ss_pred --cCCcEEEEECC--CCce--eEEecCC-------------CCCCCeEEEEE---------eeCCcEEEEEeCCCcEEEE
Q 004924 589 --HEGQIDVYEAP--TLNH--TSQLVPD-------------KMDLPITYATY---------SCDGKCIYVSCKSGHVKVF 640 (723)
Q Consensus 589 --~dg~I~vwd~~--~~~~--~~~~~~~-------------~h~~~v~~l~~---------spdg~~l~sgs~dg~I~iw 640 (723)
..+.|+.++.. ++.. ...+... ..-.....+++ .++|.+.++-...+.|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 56789998865 2321 1122110 01234677999 6777777776677889999
Q ss_pred ECCCCcEEEEeecccc-cCCCCccC-------ccceEEEEEecCCCCEEEEEECCCcEEEEecC
Q 004924 641 DTSTLELRCQINLTAY-AQPGTISL-------ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 641 d~~~~~~~~~~~~~~~-~~~g~~~~-------~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~ 696 (723)
+. +|... .+..... ...|..++ --++..+++.|.++.++++-..++.|+.++++
T Consensus 371 ~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 85 56443 3332110 00011011 12366899995367776666677888888764
No 281
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.94 E-value=0.003 Score=64.84 Aligned_cols=226 Identities=7% Similarity=-0.067 Sum_probs=135.7
Q ss_pred EEEEEeCCcEEEEEcCCCc--EEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEE-EEEcCcCCcEEEE
Q 004924 451 HLFSASGGKISIFSLETFQ--TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTK-AKLKGHQNRITCL 525 (723)
Q Consensus 451 ~l~s~sdg~I~vwd~~~~~--~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~-~~l~~~~~~i~~l 525 (723)
+|+.+....|+.+++.... ....+.+ ...+..++|++.+ .+.+-...+.|..+++..+... ..+...-.....+
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEEccCeEEEEECCCCceEEEEEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 3444556678888887653 1111211 2345688999865 4445556778999998765321 1222222345678
Q ss_pred EEcCCCCE-EEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE---cCCcEEEEECCCC
Q 004924 526 AYSLSLNV-LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPTL 601 (723)
Q Consensus 526 ~~spdg~~-l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s---~dg~I~vwd~~~~ 601 (723)
++.+.+.. .++-...+.|.++++.+.. ...+..... .....+++.|.+..|+.+ ..+.|...++. |
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~------~~~l~~~~~---~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G 154 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSL------RKVLFWQEL---DQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-G 154 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCS------CEEEECSSC---SSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-S
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCc------EEEEEeCCC---CCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-C
Confidence 88875544 4555567889999987631 111221222 467899999976666653 25789999885 4
Q ss_pred ceeEEecCCCCCCCeEEEEEeeCCcEEEEEe-CCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCE
Q 004924 602 NHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 680 (723)
Q Consensus 602 ~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~ 680 (723)
.....+.. ..-.....++++|++..|+.+. ..+.|..+++........... ..-.+..++... +.+
T Consensus 155 ~~~~~~~~-~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~----------~~~~P~glav~~--~~l 221 (318)
T 3sov_A 155 SSRFIIIN-SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG----------SLPHPFALTLFE--DIL 221 (318)
T ss_dssp CSCEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----------CCSCEEEEEEET--TEE
T ss_pred CCeEEEEE-CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecC----------CCCCceEEEEeC--CEE
Confidence 33333322 1245678999999777666654 468899999875433222210 111244666654 355
Q ss_pred EEEEECCCcEEEEecCCCce
Q 004924 681 IALGLTNGRVHVIEPLESEV 700 (723)
Q Consensus 681 las~s~Dg~v~iWd~~~~~~ 700 (723)
+.+-...+.|..++..+|+.
T Consensus 222 ywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 222 YWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEEETTTTEEEEEETTTCCS
T ss_pred EEEecCCCeEEEEECCCCCc
Confidence 55655678888888877653
No 282
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.90 E-value=0.0057 Score=65.69 Aligned_cols=244 Identities=10% Similarity=-0.025 Sum_probs=138.8
Q ss_pred CeEEEEEe---CCEEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEECC-C----cEEEEeCCCCc
Q 004924 441 SISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD-S----SILVHCPCTKK 510 (723)
Q Consensus 441 ~V~~v~~s---~~~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~d-g----~I~iwd~~~~~ 510 (723)
....++++ +..|+.+. .+.|+.+|+.++.... +.........++|++++ .++++... + .+.+++.. +.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence 34567777 25666666 5789999987665443 33445567899999999 67666642 1 34444432 32
Q ss_pred EE--EEEcCcCCcEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE
Q 004924 511 TK--AKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 587 (723)
Q Consensus 511 ~~--~~l~~~~~~i~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~ 587 (723)
.. ..+.. ......++++| +|..+++-..++.|..+|..++... .+...... .....++|+|+|++|+.
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~---~~~~~~~~-----~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT---PLFTIQDS-----GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE---EEEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE---EEEEcCCC-----CcceeEEEcCCCCEEEE
Confidence 21 22221 23356788999 6776666667889999999874321 11111111 35779999999997666
Q ss_pred E--cCCcEEEEECCC--Cce--eEEecCC-C------------CCCCeE-EEEEe--------eCCcEEEEEeCCCcEEE
Q 004924 588 I--HEGQIDVYEAPT--LNH--TSQLVPD-K------------MDLPIT-YATYS--------CDGKCIYVSCKSGHVKV 639 (723)
Q Consensus 588 s--~dg~I~vwd~~~--~~~--~~~~~~~-~------------h~~~v~-~l~~s--------pdg~~l~sgs~dg~I~i 639 (723)
+ ..+.|+.++... +.. ...+... + .-.... .++.. ++|.+.++=...+.|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 3 677899987653 221 1122110 0 011223 44443 33555555556688888
Q ss_pred EECCCCcEEEEeecccccCCCCccC-------ccceEEEEEecCCCCEEEEEECCCcEEEEecC
Q 004924 640 FDTSTLELRCQINLTAYAQPGTISL-------ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 696 (723)
Q Consensus 640 wd~~~~~~~~~~~~~~~~~~g~~~~-------~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~ 696 (723)
++ .+|..............|..++ --.+..+++.|.++.++++-..++.|+.++++
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 88 4565433332100000010011 11367899998435566665567788888764
No 283
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.90 E-value=0.0005 Score=79.82 Aligned_cols=194 Identities=11% Similarity=0.042 Sum_probs=111.3
Q ss_pred CeEEEEEc-CCC-eEEEEE-CCC----cEEEEeCCCC-cEEE-EEcCcCCcEEEEEEcCCCCEEEEEeCC-----CcEEE
Q 004924 480 IATYFILL-PQD-LFAFGF-DDS----SILVHCPCTK-KTKA-KLKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCV 545 (723)
Q Consensus 480 ~v~~l~~~-p~~-~l~sgs-~dg----~I~iwd~~~~-~~~~-~l~~~~~~i~~l~~spdg~~l~s~s~d-----g~I~v 545 (723)
.+...+|+ ||| .+|.+. .+| .|+++|+.+| +.+. .+. .....+.|+|||+.|+....| ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 56788999 999 666443 333 4999999998 6321 111 113467899999988877765 25788
Q ss_pred EeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E---cCCcEEEEECCCCc-ee--EEecCCCCCCCeEE
Q 004924 546 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAPTLN-HT--SQLVPDKMDLPITY 618 (723)
Q Consensus 546 wd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s---~dg~I~vwd~~~~~-~~--~~~~~~~h~~~v~~ 618 (723)
+++.++.... ..+. ..... ....++.|||||++|+. + ....|+++|+.++. .. ..+.. .......+
T Consensus 252 ~~lgt~~~~~-~lv~--~~~~~---~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~-~~~~~~~s 324 (751)
T 2xe4_A 252 HVMGKLQSED-VCLY--EEHNP---LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP-REKGVRYD 324 (751)
T ss_dssp EETTSCGGGC-EEEE--ECCCT---TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC-CCTTCCEE
T ss_pred EECCCCchhc-EEEE--ecCCC---ceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec-CCCCceEE
Confidence 8887643211 1111 11111 34668899999999886 3 23478999998753 22 33332 22445555
Q ss_pred EEEeeCCcEEEEEeCC----CcEEEEECCCC-cEEE-EeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEE
Q 004924 619 ATYSCDGKCIYVSCKS----GHVKVFDTSTL-ELRC-QINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV 692 (723)
Q Consensus 619 l~~spdg~~l~sgs~d----g~I~iwd~~~~-~~~~-~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~i 692 (723)
+.|+.++.+++.+..+ ..|+.+++.++ .... .+. + ...+.+..+.+. .+.++++...||..+|
T Consensus 325 ~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~-~--------~~~~~l~~~~~~--~~~lv~~~~~~g~~~l 393 (751)
T 2xe4_A 325 VQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD-H--------SEDVFMESIAVR--SNYLVVAGRRAGLTRI 393 (751)
T ss_dssp EEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC-C--------CSSEEEEEEEEC--SSEEEEEEEETTEEEE
T ss_pred EeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC-C--------CCCcEEEEEEEE--CCEEEEEEEeCCEEEE
Confidence 5554444444444443 36777787653 2112 221 1 222233355554 3456677778886555
Q ss_pred Ee
Q 004924 693 IE 694 (723)
Q Consensus 693 Wd 694 (723)
|-
T Consensus 394 ~~ 395 (751)
T 2xe4_A 394 WT 395 (751)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 284
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.87 E-value=0.034 Score=57.11 Aligned_cols=191 Identities=10% Similarity=0.017 Sum_probs=108.8
Q ss_pred CCeEEEEEe--CCEEEEEeCCcEEEEEcCCCcEEEEE-eCCCCCeEEEEEcCCC-eEEEEECCCcEEE-EeCCCCcEEEE
Q 004924 440 DSISCFALR--GSHLFSASGGKISIFSLETFQTLATF-ANPPPIATYFILLPQD-LFAFGFDDSSILV-HCPCTKKTKAK 514 (723)
Q Consensus 440 ~~V~~v~~s--~~~l~s~sdg~I~vwd~~~~~~~~~~-~~~~~~v~~l~~~p~~-~l~sgs~dg~I~i-wd~~~~~~~~~ 514 (723)
..+..+.+. +..++++.+|.|.. ..+.|+.-... ......+..+.+.+++ .++++ .+|.+.. .|- .|+.-..
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~d~-gG~tW~~ 198 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVS-SRGSFYSTWEP-GQTAWEP 198 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEE-TTSSEEEEECT-TCSSCEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEE-CCCcEEEEeCC-CCCceeE
Confidence 446777776 44444444665432 22234333332 3445678899999988 66555 4555444 342 1222111
Q ss_pred E-cCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeee-cCCCCCCCCeEEEEEccCCCEEEEEcCCc
Q 004924 515 L-KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-TGLVPETTIVNHIQFHPDQIHLLSIHEGQ 592 (723)
Q Consensus 515 l-~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~-~~~~~~~~~v~~l~~spdg~~l~~s~dg~ 592 (723)
+ ......+..+.+.+++..+ .++.+|.+++.+.+.|.. ...+. .+ .... ..+.++.+.+++..++++.++.
T Consensus 199 ~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~t--W~~~~-~~~~~~~---~~~~~v~~~~~~~~~~~g~~g~ 271 (327)
T 2xbg_A 199 HNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSEN--WGELL-SPLRRNS---VGFLDLAYRTPNEVWLAGGAGA 271 (327)
T ss_dssp EECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEE--ECCCB-CTTSSCC---SCEEEEEESSSSCEEEEESTTC
T ss_pred CCCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCe--eEecc-CCcccCC---cceEEEEecCCCEEEEEeCCCe
Confidence 2 2355678899999988755 455678887764332211 11111 11 0111 3588999999888888888887
Q ss_pred EEEEECCCCceeEEecCC-CCCCCeEEEEEeeCCcEEEEEeCCCcEEEEEC
Q 004924 593 IDVYEAPTLNHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 642 (723)
Q Consensus 593 I~vwd~~~~~~~~~~~~~-~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~ 642 (723)
| .+....|+.-..+... .....+.++.|.+++. +++++.+|.|.-++-
T Consensus 272 i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 272 L-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp E-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred E-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 7 4555556544444321 1235678888886665 556667888766653
No 285
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.84 E-value=0.012 Score=60.18 Aligned_cols=200 Identities=9% Similarity=-0.064 Sum_probs=126.7
Q ss_pred CeEEEEEe--CCEEEEEe--CCcEEEEEcCCCcEE-EEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEEE
Q 004924 441 SISCFALR--GSHLFSAS--GGKISIFSLETFQTL-ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA 513 (723)
Q Consensus 441 ~V~~v~~s--~~~l~s~s--dg~I~vwd~~~~~~~-~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~ 513 (723)
...+++|. ++.|+-+. .+.|..+++..+... ..+...-.....+++.+.+ .+++-...+.|.+++++......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 35678888 55655555 688999998765321 2222222345578888755 44555567799999987544333
Q ss_pred EEcCcCCcEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE--c
Q 004924 514 KLKGHQNRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H 589 (723)
Q Consensus 514 ~l~~~~~~i~~l~~spdg~~l~s~s~--dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s--~ 589 (723)
.+.........++++|.+..|+.+.. .+.|...++.... ...+..... .....++++|++..|+.+ .
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~------~~~~~~~~l---~~Pnglavd~~~~~lY~aD~~ 186 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS------RFIIINSEI---YWPNGLTLDYEEQKLYWADAK 186 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS------CEEEECSSC---SCEEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC------eEEEEECCC---CCccEEEEeccCCEEEEEECC
Confidence 33344456789999997666666553 5788888887521 111111111 467899999987777764 6
Q ss_pred CCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEee
Q 004924 590 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 652 (723)
Q Consensus 590 dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~ 652 (723)
.+.|..+|+.... ...+.. ........+++. .+..+++-...+.|..++..+|+....+.
T Consensus 187 ~~~I~~~d~dG~~-~~~~~~-~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 187 LNFIHKSNLDGTN-RQAVVK-GSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TTEEEEEETTSCS-CEEEEC-SCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEcCCCCc-eEEEec-CCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 6789999986433 333322 224556778875 34445555567889999998887666554
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.83 E-value=0.021 Score=66.01 Aligned_cols=203 Identities=8% Similarity=-0.066 Sum_probs=125.7
Q ss_pred CCCCeEEEEEe--CCEEEEEe--CCcEEEEEcCCC----cEEEEEeCCCCCeEEEEEcCCC-e-EEEEECCCcEEEEeCC
Q 004924 438 PKDSISCFALR--GSHLFSAS--GGKISIFSLETF----QTLATFANPPPIATYFILLPQD-L-FAFGFDDSSILVHCPC 507 (723)
Q Consensus 438 h~~~V~~v~~s--~~~l~s~s--dg~I~vwd~~~~----~~~~~~~~~~~~v~~l~~~p~~-~-l~sgs~dg~I~iwd~~ 507 (723)
....+.+++|. ++.|+.+. .+.|+.+++... .....+.........+++.+.+ . +++-...+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 34567788998 56666555 678998988642 2233333344456688888877 4 4455567899999988
Q ss_pred CCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeC-C-CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEE
Q 004924 508 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-D-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 585 (723)
Q Consensus 508 ~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~-d-g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l 585 (723)
.......+...-.....|+++|.+..|+.+.. . +.|.+.++.+.. ...+..... .....|++++.+..|
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~------~~~lv~~~l---~~P~GLavD~~~~~L 572 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD------IYSLVTENI---QWPNGITLDLLSGRL 572 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC------EEEEECSSC---SCEEEEEEETTTTEE
T ss_pred CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc------eEEEEeCCC---CCceEEEEecCCCeE
Confidence 55444444444456889999997666666553 2 678888887632 111222222 468899999887777
Q ss_pred EEE--cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEE-EeCCCcEEEEECCCCcEEEEe
Q 004924 586 LSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV-SCKSGHVKVFDTSTLELRCQI 651 (723)
Q Consensus 586 ~~s--~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s-gs~dg~I~iwd~~~~~~~~~~ 651 (723)
+.+ ..+.|..+++........+..........++++. +.+|+. -...+.|...+..+|+.+..+
T Consensus 573 YwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 573 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 764 5678999999644333233221123345566663 335554 445688888888777655554
No 287
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.73 E-value=0.019 Score=58.82 Aligned_cols=192 Identities=11% Similarity=0.110 Sum_probs=124.8
Q ss_pred EEEEEe-CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcC----CC-e--EEEEE--C--CCcEEEEeC--CCCcEEEEEc
Q 004924 451 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP----QD-L--FAFGF--D--DSSILVHCP--CTKKTKAKLK 516 (723)
Q Consensus 451 ~l~s~s-dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p----~~-~--l~sgs--~--dg~I~iwd~--~~~~~~~~l~ 516 (723)
.++... .+.+.+||+ +|+.++.+.. +.+..+..-| .| . ++.++ . +++|.+|++ .+++ +..+.
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~ 117 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMT 117 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECS
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeecc
Confidence 444444 788999999 8999988853 4566666555 22 1 33333 3 578999966 4443 55442
Q ss_pred C------cC-CcEEEEEE--cCC-CC-EEEEEeCCCcEEEEeCC---CCceeeceeeeeeecCCCCCCCCeEEEEEccCC
Q 004924 517 G------HQ-NRITCLAY--SLS-LN-VLVSSGADAQLCVWDAV---GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 582 (723)
Q Consensus 517 ~------~~-~~i~~l~~--spd-g~-~l~s~s~dg~I~vwd~~---~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg 582 (723)
. .. ..+..+++ +|. +. ++++...+|.+..|++. .+. ...+.+.++..+ +.+..++..+..
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~-~~~~lVR~f~lg-----sq~EgcvvDd~~ 191 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY-ISGKKVRAFKMN-----SQTEGMAADDEY 191 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC-EEEEEEEEEECS-----SCEEEEEEETTT
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc-ccceEEEEecCC-----CCcceEEEcCCC
Confidence 2 11 44555666 674 44 68888889999999883 221 233445555554 578899999988
Q ss_pred CEEEEE-cCCcEEEEECC-----CCceeEEecCCCCCCCeEEEEEe--eCCc-EEEEEe-CCCcEEEEECC-CCcEEEEe
Q 004924 583 IHLLSI-HEGQIDVYEAP-----TLNHTSQLVPDKMDLPITYATYS--CDGK-CIYVSC-KSGHVKVFDTS-TLELRCQI 651 (723)
Q Consensus 583 ~~l~~s-~dg~I~vwd~~-----~~~~~~~~~~~~h~~~v~~l~~s--pdg~-~l~sgs-~dg~I~iwd~~-~~~~~~~~ 651 (723)
..|+++ .+..|..++.+ +++.+..+....-...+..+++- ++++ ||++++ .+++..+||.. +.+.+..+
T Consensus 192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 888887 55567777755 34555554322223478888884 5555 777666 56799999997 77777777
Q ss_pred e
Q 004924 652 N 652 (723)
Q Consensus 652 ~ 652 (723)
.
T Consensus 272 ~ 272 (355)
T 3amr_A 272 R 272 (355)
T ss_dssp E
T ss_pred E
Confidence 5
No 288
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.73 E-value=0.11 Score=62.75 Aligned_cols=326 Identities=10% Similarity=-0.001 Sum_probs=177.9
Q ss_pred CCEEEEEeC-CCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEe--CCCCEEEEEECCCcEEEEeccC--Ccc---
Q 004924 337 ADSAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS--HSGDFLVALTQTATHKLWKWQS--NKQ--- 408 (723)
Q Consensus 337 g~~la~~s~-dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fs--pdg~~las~s~dg~i~iWd~~~--~~~--- 408 (723)
++++|.|.. |++++|+++.. -..+....+++ .....++.+. ....+|..|-.||.+.-+.++. +..
T Consensus 571 s~~~aVg~~~d~tv~I~sL~~---l~~~~~~~L~~---~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~ 644 (1158)
T 3ei3_A 571 SPLCAIGLWTDISARILKLPS---FELLHKEMLGG---EIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDR 644 (1158)
T ss_dssp CSEEEEEETTTTEEEEEETTT---CCEEEEEECCS---SCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEE
T ss_pred ccEEEEEECCCCEEEEEECCC---CCeEEEEECCC---CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccc
Confidence 578999997 99999999974 22233333432 2233333332 3446888999999887666543 111
Q ss_pred ---cccccceeeeeEEEecC------------------CCeeeeeccCCCCCCCe-EEEEEe----CCEEEEEeCCcEEE
Q 004924 409 ---SLEEENVNMESQLYQPS------------------SKLVMTNDIAADPKDSI-SCFALR----GSHLFSASGGKISI 462 (723)
Q Consensus 409 ---~~g~~~~~~~~~~~~~~------------------~~~~~~~~~~~~h~~~V-~~v~~s----~~~l~s~sdg~I~v 462 (723)
.-|.....+ ..+... .+.+..... ....+ ....|+ .+-++..+++.++|
T Consensus 645 r~~~LG~~pv~L--~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l---~~~~v~~~~~F~se~~~~g~v~~~~~~LrI 719 (1158)
T 3ei3_A 645 KKVTLGTQPTVL--RTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNV---NLKEVNYMCPLNSDGYPDSLALANNSTLTI 719 (1158)
T ss_dssp EEEECCSSCCEE--EEEESSSCEEEEEESSSCEEEEESSSSEEEEEB---SSSCCCEEEEECCSSSTTEEEEECSSCEEE
T ss_pred eeEEcCCCceEE--EEEeeCCceeEEEECCCCEEEEEcCCceEEecc---ChHHhceEeccCcccCCCcEEEEcCCceEE
Confidence 011110000 111111 111111000 11122 233455 34566555667888
Q ss_pred EEcCCCcE--EEEEeCCCCCeEEEEEcCCC-eEEEEEC------------------------------------------
Q 004924 463 FSLETFQT--LATFANPPPIATYFILLPQD-LFAFGFD------------------------------------------ 497 (723)
Q Consensus 463 wd~~~~~~--~~~~~~~~~~v~~l~~~p~~-~l~sgs~------------------------------------------ 497 (723)
..+.+.+. ++++. -...+..++++|+. .++.+..
T Consensus 720 ~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1158)
T 3ei3_A 720 GTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET 798 (1158)
T ss_dssp EEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC---------
T ss_pred EEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchh
Confidence 88754322 22222 23467788888876 4333221
Q ss_pred -------CCcEEEEeCCCCcEEEEEcC-cCCcEEEEE---EcCC-CCEEEEEe----------CCCcEEEEeCCCCceee
Q 004924 498 -------DSSILVHCPCTKKTKAKLKG-HQNRITCLA---YSLS-LNVLVSSG----------ADAQLCVWDAVGWKKLC 555 (723)
Q Consensus 498 -------dg~I~iwd~~~~~~~~~l~~-~~~~i~~l~---~spd-g~~l~s~s----------~dg~I~vwd~~~~~~~~ 555 (723)
-+.|++.|..+.+.+..+.- ....+.+++ |..+ ..++++|+ ..|.|.+|++..++.
T Consensus 799 ~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL-- 876 (1158)
T 3ei3_A 799 SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKL-- 876 (1158)
T ss_dssp -CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEE--
T ss_pred hcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEE--
Confidence 12467777777776655532 223344444 3322 46788876 347899999874321
Q ss_pred ceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCC
Q 004924 556 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG 635 (723)
Q Consensus 556 ~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg 635 (723)
+.+..... . +++++++--. | +|+++....|++|++...+.+. .... +-..|..+.....++++++|..-.
T Consensus 877 -~lv~~~~v--~---g~v~al~~~~-g-~Lla~ig~~l~vy~l~~~~~L~-~~~~-~~~~i~~~~l~~~~~~I~vgD~~~ 946 (1158)
T 3ei3_A 877 -QTVAEKEV--K---GAVYSMVEFN-G-KLLASINSTVRLYEWTTEKELR-TECN-HYNNIMALYLKTKGDFILVGDLMR 946 (1158)
T ss_dssp -EEEEEEEE--S---SCEEEEEEET-T-EEEEEETTEEEEEEECTTSCEE-EEEE-ECCCSCEEEEEEETTEEEEEESSB
T ss_pred -EEEEEEEc--C---CcCEEEeeeC-C-EEEEEcCCEEEEEECCCCceEE-EEee-ccccEEEEEEeccCCEEEEEEhhh
Confidence 12221111 1 6788877543 4 7777777899999997655433 1111 111233334444678899998777
Q ss_pred cEEEEE--CCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCC
Q 004924 636 HVKVFD--TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 636 ~I~iwd--~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~ 697 (723)
.|.++. ...+++...-. .-.+.+++++.+-. + ..++.+..+|.+.+.....
T Consensus 947 Sv~~~~y~~~~~~L~~~a~---------D~~~~~vta~~~ld-~-~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 947 SVLLLAYKPMEGNFEEIAR---------DFNPNWMSAVEILD-D-DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp CEEEEEEETTTTEEEEEEE---------CCSCBCEEEEEEEE-T-TEEEEEETTSEEEEEEECT
T ss_pred eEEEEEEEcCCCeEEEEEe---------ecccccEEEEEEEc-c-CcEEEEcCCCcEEEEecCC
Confidence 777654 44444333221 13345677888875 3 5788899999999987754
No 289
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.71 E-value=0.022 Score=65.82 Aligned_cols=229 Identities=10% Similarity=-0.042 Sum_probs=139.3
Q ss_pred CCEEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCC----cEEEEEcCcCCcE
Q 004924 449 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK----KTKAKLKGHQNRI 522 (723)
Q Consensus 449 ~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~----~~~~~l~~~~~~i 522 (723)
..+|+.+....|+..++......... .....+..++|++.+ .+++-...+.|+.+++... .....+.......
T Consensus 395 ~p~Ll~an~~~Ir~i~l~~~~~~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 395 IAYLFFTNRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp CCEEEEECBSSEEEECTTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred ccccccccccceeEeeccCCcceeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 34555555677888888765544433 334567789999865 4445555678999988753 2233344344556
Q ss_pred EEEEEcCCCCEEEE-EeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE--c-CCcEEEEEC
Q 004924 523 TCLAYSLSLNVLVS-SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H-EGQIDVYEA 598 (723)
Q Consensus 523 ~~l~~spdg~~l~s-~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s--~-dg~I~vwd~ 598 (723)
..+++.+.+..|+. -...+.|.+.++.+.. ...+..... .....|++.|.+.+|+.+ . .+.|.+.++
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~------~~~l~~~~l---~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~ 544 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVK------RKTLFRENG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 544 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSS------EEEEEECTT---CCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCe------EEEEEeCCC---CCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence 78999987755554 4457889999998632 111222222 468899999987666653 2 368999998
Q ss_pred CCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEe-CCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCC
Q 004924 599 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 677 (723)
Q Consensus 599 ~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d 677 (723)
. |.....+.. ........+++++.+..|+.+. ..+.|...++........+... ..--...+++...
T Consensus 545 d-G~~~~~lv~-~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~--------~~l~~P~glav~~-- 612 (791)
T 3m0c_C 545 N-GVDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE--------KRLAHPFSLAVFE-- 612 (791)
T ss_dssp T-SCCEEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT--------TTTSSEEEEEEET--
T ss_pred C-CCceEEEEe-CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCC--------CccCCCCEEEEeC--
Confidence 5 443444432 2246788999998777777664 4578999998765444333211 1111244666644
Q ss_pred CCEEEEEECCCcEEEEecCCCc
Q 004924 678 PNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 678 ~~~las~s~Dg~v~iWd~~~~~ 699 (723)
+.++++-...+.|...+..+|+
T Consensus 613 ~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 613 DKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp TEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEECCCCEEEEEeCCCCc
Confidence 3444555556777777766664
No 290
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.63 E-value=0.013 Score=63.03 Aligned_cols=242 Identities=10% Similarity=0.025 Sum_probs=129.7
Q ss_pred CceEEEEEeCC--CCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CC
Q 004924 375 GRVVRLIYSHS--GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 450 (723)
Q Consensus 375 ~~V~~l~fspd--g~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~ 450 (723)
.....++|+|+ +..|..+...+.|+.++.. ++.+.... .......+++++ |+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~---------------------~g~v~~~~---~~~~~P~giavd~dG~ 194 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFV---------------------NQYVDIKT---TNIGQCADVNFTLNGD 194 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETT---------------------TTEEEEEC---CCCSCEEEEEECTTCC
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECC---------------------CCEEEEee---cCCCCccEEEECCCCC
Confidence 35678899984 3445555444666666643 23322211 133457889999 66
Q ss_pred EEEEEeCC----c-EEEEEcCCCcE-EEEEeCCCCCeEEEEEcC-CC-eEEEEECCCcEEEEeCCCCcEEEEE-cC-cCC
Q 004924 451 HLFSASGG----K-ISIFSLETFQT-LATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKL-KG-HQN 520 (723)
Q Consensus 451 ~l~s~sdg----~-I~vwd~~~~~~-~~~~~~~~~~v~~l~~~p-~~-~l~sgs~dg~I~iwd~~~~~~~~~l-~~-~~~ 520 (723)
++++...+ . +...+...+.. ...+. .......++++| ++ .+++-..++.|+.+|..++.....+ .. ...
T Consensus 195 lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~ 273 (433)
T 4hw6_A 195 MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKG 273 (433)
T ss_dssp EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCS
T ss_pred EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCC
Confidence 44443322 1 33333322111 01121 123345678899 55 4445456778999999877763333 21 122
Q ss_pred cEEEEEEcCCCCEEEEEe-CCCcEEEEeCCC--Cceeeceeeeeee--cCCC------CCCCCeEEEEE---------cc
Q 004924 521 RITCLAYSLSLNVLVSSG-ADAQLCVWDAVG--WKKLCSKFLHSFQ--TGLV------PETTIVNHIQF---------HP 580 (723)
Q Consensus 521 ~i~~l~~spdg~~l~s~s-~dg~I~vwd~~~--~~~~~~~~l~~~~--~~~~------~~~~~v~~l~~---------sp 580 (723)
.-..++|+|+|+.|+.+. ..+.|+.++... +.......+.... .+.. ..-.....+++ .+
T Consensus 274 ~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~ 353 (433)
T 4hw6_A 274 SNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED 353 (433)
T ss_dssp SCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC
T ss_pred CcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC
Confidence 334699999999655554 567899988653 2111000010000 0000 00034667999 66
Q ss_pred CCCEEEE-EcCCcEEEEECCCCceeEEecCCC----------------CCCCeEEEEEe-eCCcEEEEEeCCCcEEEEEC
Q 004924 581 DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDK----------------MDLPITYATYS-CDGKCIYVSCKSGHVKVFDT 642 (723)
Q Consensus 581 dg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~----------------h~~~v~~l~~s-pdg~~l~sgs~dg~I~iwd~ 642 (723)
+|.+.++ ...+.|+.++. +|.. .++.+.. .-.....++++ ++|.++++=..++.|+.+++
T Consensus 354 ~g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 354 EYDFYFCDRDSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp CEEEEEEETTTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CCcEEEEECCCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 6766666 36778999985 5643 3332211 12346778888 56665555555677777665
Q ss_pred C
Q 004924 643 S 643 (723)
Q Consensus 643 ~ 643 (723)
+
T Consensus 432 e 432 (433)
T 4hw6_A 432 E 432 (433)
T ss_dssp C
T ss_pred C
Confidence 3
No 291
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.62 E-value=0.013 Score=59.86 Aligned_cols=181 Identities=8% Similarity=0.065 Sum_probs=115.2
Q ss_pred eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCC----CC---EEEEEe-C--CCcEEEEeCC--CCceeecee
Q 004924 491 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS----LN---VLVSSG-A--DAQLCVWDAV--GWKKLCSKF 558 (723)
Q Consensus 491 ~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spd----g~---~l~s~s-~--dg~I~vwd~~--~~~~~~~~~ 558 (723)
.++.....+-+.+||+ +|+.+..+.. +.++.+..-|+ |+ ++++.. . +++|.+|++. ++.
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~------ 112 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT------ 112 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC------
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc------
Confidence 5666667789999999 7899988864 56777766652 22 223333 3 5789999774 322
Q ss_pred eeee-----e--cCCCCCCCCeEEEEE--ccC-CC-EEEE-EcCCcEEEEECC-------CCceeEEecCCCCCCCeEEE
Q 004924 559 LHSF-----Q--TGLVPETTIVNHIQF--HPD-QI-HLLS-IHEGQIDVYEAP-------TLNHTSQLVPDKMDLPITYA 619 (723)
Q Consensus 559 l~~~-----~--~~~~~~~~~v~~l~~--spd-g~-~l~~-s~dg~I~vwd~~-------~~~~~~~~~~~~h~~~v~~l 619 (723)
+..+ + ... ..+..+|+ +|. ++ ++++ ..+|.+..|++. +.+.++++.. ...+-.+
T Consensus 113 l~~i~~~~~pv~t~~----~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~Egc 185 (355)
T 3amr_A 113 LQSMTDPDHPIATAI----NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGM 185 (355)
T ss_dssp EEECSCTTSCEECCC----SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEE
T ss_pred eeeccccccCcCCCC----CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceE
Confidence 2212 1 111 34566777 774 44 4444 488999999883 3456677764 4578899
Q ss_pred EEeeCCcEEEEEeCCCcEEEEECC-----CCcEEEEeecccccCCCCccCccceEEEEE--ecCCCC-EEEEEE-CCCcE
Q 004924 620 TYSCDGKCIYVSCKSGHVKVFDTS-----TLELRCQINLTAYAQPGTISLELYPLVIAA--HPLEPN-RIALGL-TNGRV 690 (723)
Q Consensus 620 ~~spdg~~l~sgs~dg~I~iwd~~-----~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~--sp~d~~-~las~s-~Dg~v 690 (723)
...+....|+.+-++.-|..++.+ +++.+..+.. ++-...+. .++. .+ ++. +|++++ .+++.
T Consensus 186 vvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~------g~l~aDvE--GLai~~~~-~g~gyLivSsQG~~s~ 256 (355)
T 3amr_A 186 AADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG------RHLTRDIE--GLTIYYAA-DGKGYLMASSQGNSSY 256 (355)
T ss_dssp EEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS------SSBCSCEE--EEEEEECG-GGCEEEEEEEGGGTEE
T ss_pred EEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC------CccccCcc--eEEEEecC-CCCEEEEEEcCCCCEE
Confidence 999999999999999777777755 3445544421 11122334 4554 45 444 555555 67799
Q ss_pred EEEecC
Q 004924 691 HVIEPL 696 (723)
Q Consensus 691 ~iWd~~ 696 (723)
.|||..
T Consensus 257 ~Vydr~ 262 (355)
T 3amr_A 257 AIYDRQ 262 (355)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 999996
No 292
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.60 E-value=0.056 Score=60.87 Aligned_cols=226 Identities=11% Similarity=-0.027 Sum_probs=142.4
Q ss_pred CEEEEEeCCcEEEEEcCCCcEEEEEe-CCCCCeEEEEEcCCC-eE-EEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEE
Q 004924 450 SHLFSASGGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LF-AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 526 (723)
Q Consensus 450 ~~l~s~sdg~I~vwd~~~~~~~~~~~-~~~~~v~~l~~~p~~-~l-~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~ 526 (723)
.+|+.+..+.|+..++.+......+. ..-..+..++|++.+ .+ ++-..++.|..+++........+.........++
T Consensus 7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 7 AFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp CEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred cEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 35555567889999998765433332 223457799999976 44 4555678999999876544444443334567889
Q ss_pred EcCCCCEEEE-EeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE---cCCcEEEEECCCCc
Q 004924 527 YSLSLNVLVS-SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPTLN 602 (723)
Q Consensus 527 ~spdg~~l~s-~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s---~dg~I~vwd~~~~~ 602 (723)
+.+.+..|+. -...+.|.+.++.+... .. +..... .....+++.|....|+.+ ..+.|...++....
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~---~~---l~~~~l---~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~ 157 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHR---QV---LVWKDL---DSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE 157 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTC---EE---EECSSC---CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcE---EE---EEeCCC---CCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc
Confidence 9876655544 44567899999876321 11 121222 467899999966566653 25688888885443
Q ss_pred eeEEecCCCCCCCeEEEEEeeCCcEEEEEe-CCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEE
Q 004924 603 HTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 681 (723)
Q Consensus 603 ~~~~~~~~~h~~~v~~l~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~l 681 (723)
...+.. .......+++++++..|+.+. ..+.|..+++..... ..+... . . .+.+++... +.++
T Consensus 158 -~~~l~~--~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~-----l--~---~P~glav~~--~~ly 221 (628)
T 4a0p_A 158 -RTTLVP--NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD-----L--P---HPFGLTQYQ--DYIY 221 (628)
T ss_dssp -CEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC-----C--S---CEEEEEEET--TEEE
T ss_pred -eEEEEC--CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc-----C--C---CceEEEEEC--CEEE
Confidence 333322 256788999999877776654 457899999876544 233210 0 1 234677654 3455
Q ss_pred EEEECCCcEEEEecCCCce
Q 004924 682 ALGLTNGRVHVIEPLESEV 700 (723)
Q Consensus 682 as~s~Dg~v~iWd~~~~~~ 700 (723)
.+-...+.|...|..+++.
T Consensus 222 ~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 222 WTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp EEETTTTEEEEEETTTCCS
T ss_pred EecCCCCEEEEEECCCCCc
Confidence 5555578888888766653
No 293
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.57 E-value=0.00039 Score=79.79 Aligned_cols=202 Identities=9% Similarity=-0.038 Sum_probs=118.6
Q ss_pred CCeEEEEEe--CCEEEEEe--CCcEEEEEcCC----CcEEEEEeCCCCCeEEEEEcCCC--eEEEEECCCcEEEEeCCCC
Q 004924 440 DSISCFALR--GSHLFSAS--GGKISIFSLET----FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK 509 (723)
Q Consensus 440 ~~V~~v~~s--~~~l~s~s--dg~I~vwd~~~----~~~~~~~~~~~~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~ 509 (723)
..+..++|. ++.|+.+. .+.|..+++.. ......+.........+++.+.+ ++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 345678888 56666665 68899999875 22222221122234467777554 4444456778999998755
Q ss_pred cEEEEEcCcCCcEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE
Q 004924 510 KTKAKLKGHQNRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 587 (723)
Q Consensus 510 ~~~~~l~~~~~~i~~l~~spdg~~l~s~s~--dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~ 587 (723)
.....+.........++++|.+..|+.+.. .+.|.++++.... ...+..... .....|+|+|++..|+.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~------~~~l~~~~l---~~PnGlavd~~~~~LY~ 556 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD------IYSLVTENI---QWPNGITLDLLSGRLYW 556 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC------CCEESCSSC---SSCCCEEECTTTCCEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC------eeEEEeCCC---CCccEEEEeccCCEEEE
Confidence 443333323345678899987655555443 2678887776521 111111111 35678999998766665
Q ss_pred E--cCCcEEEEECCCCceeEEecC-CCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEee
Q 004924 588 I--HEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 652 (723)
Q Consensus 588 s--~dg~I~vwd~~~~~~~~~~~~-~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~ 652 (723)
+ ..+.|.++|+.... ...+.. .........+++..+ .++++....+.|..++..+|+.+..+.
T Consensus 557 aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 557 VDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp EETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred EecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 3 66789999986433 333321 111233445566443 444455566899999998888777664
No 294
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.57 E-value=0.28 Score=59.13 Aligned_cols=308 Identities=11% Similarity=-0.015 Sum_probs=163.4
Q ss_pred CCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCC------CCEEEEEEC-CCcEEEEeccCCcc
Q 004924 336 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS------GDFLVALTQ-TATHKLWKWQSNKQ 408 (723)
Q Consensus 336 dg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspd------g~~las~s~-dg~i~iWd~~~~~~ 408 (723)
++..++.++ ++.+..++++++. -....... -..+|.|+++.|. ++++|.|.. |++++|+++...+.
T Consensus 522 n~~~vvva~-g~~l~~fel~~~~-L~~~~~~~-----l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~ 594 (1158)
T 3ei3_A 522 NSSQVVVAV-GRALYYLQIHPQE-LRQISHTE-----MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFEL 594 (1158)
T ss_dssp CSSEEEEEE-TTEEEEEEEETTE-EEEEEEEE-----CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCE
T ss_pred CCCEEEEEE-CCEEEEEEeeCCc-eeeecccC-----CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCe
Confidence 345666664 5677777776310 01112222 2568999999863 468999996 99999999874221
Q ss_pred cccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe----CCEEEEEe-CCcEEEEEc--CCCcEEEE---EeCCC
Q 004924 409 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSL--ETFQTLAT---FANPP 478 (723)
Q Consensus 409 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s----~~~l~s~s-dg~I~vwd~--~~~~~~~~---~~~~~ 478 (723)
.. .... +......++.+. ..+|..|- ||.+..+.+ .+|+.... +-+ .
T Consensus 595 -----~~-----~~~L------------~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~ 651 (1158)
T 3ei3_A 595 -----LH-----KEML------------GGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-T 651 (1158)
T ss_dssp -----EE-----EEEC------------CSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-S
T ss_pred -----EE-----EEEC------------CCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-C
Confidence 00 0000 111233444443 33566666 888765554 45544322 223 3
Q ss_pred CCeEEEEEcCCC--eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcE-EEEEEcCCC--CEEEEEeCCCcEEEEeCCCCce
Q 004924 479 PIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI-TCLAYSLSL--NVLVSSGADAQLCVWDAVGWKK 553 (723)
Q Consensus 479 ~~v~~l~~~p~~--~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i-~~l~~spdg--~~l~s~s~dg~I~vwd~~~~~~ 553 (723)
.++.-..+...+ .+++.| +....++.-+ ++.... .-....+ ....|+... .-++..+ ++.+++..+....
T Consensus 652 ~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s-~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~- 726 (1158)
T 3ei3_A 652 QPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFS-NVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQ- 726 (1158)
T ss_dssp SCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEE-EBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSS-
T ss_pred CceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEe-ccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccC-
Confidence 344434444444 333333 4444444433 332211 1111122 233454321 3344443 5569998876532
Q ss_pred eeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E--cC----------------------------------------
Q 004924 554 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I--HE---------------------------------------- 590 (723)
Q Consensus 554 ~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s--~d---------------------------------------- 590 (723)
....++++-+ ..+..++++|+.+.+++ . .+
T Consensus 727 --~~~~~~ipL~-----~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1158)
T 3ei3_A 727 --KLHIRTVPLY-----ESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETS 799 (1158)
T ss_dssp --SEEEEEEECS-----SEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------
T ss_pred --CeeEEEEeCC-----CCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhh
Confidence 2344445555 46888899888766554 2 10
Q ss_pred -------CcEEEEECCCCceeEEecCCCCCCCeEEEEEe---e-CCcEEEEEe----------CCCcEEEEECCCCcEEE
Q 004924 591 -------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYS---C-DGKCIYVSC----------KSGHVKVFDTSTLELRC 649 (723)
Q Consensus 591 -------g~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~s---p-dg~~l~sgs----------~dg~I~iwd~~~~~~~~ 649 (723)
+.|++.|-.+.+.+..+.... ...+.+++.- . ...++++|+ ..|.|++|++..+++..
T Consensus 800 ~g~~~~~s~i~lidp~t~~~i~~~~l~~-nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~l 878 (1158)
T 3ei3_A 800 FGEEVEVHNLLIIDQHTFEVLHAHQFLQ-NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQT 878 (1158)
T ss_dssp CCCEEEEEEEEEEETTTCCEEEEEECCT-TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEE
T ss_pred cCCceeeEEEEEEeCCCCeEEEEEeCCC-CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEE
Confidence 236777877777776665432 4445555532 2 246888876 24889999997554433
Q ss_pred EeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 650 QINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 650 ~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
..... ..+.++ +++-- +|.++|+. .++|++|++...+
T Consensus 879 v~~~~-------v~g~v~--al~~~--~g~Lla~i--g~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 879 VAEKE-------VKGAVY--SMVEF--NGKLLASI--NSTVRLYEWTTEK 915 (1158)
T ss_dssp EEEEE-------ESSCEE--EEEEE--TTEEEEEE--TTEEEEEEECTTS
T ss_pred EEEEE-------cCCcCE--EEeee--CCEEEEEc--CCEEEEEECCCCc
Confidence 22211 123344 55533 35444433 5799999997653
No 295
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.53 E-value=0.054 Score=58.57 Aligned_cols=252 Identities=10% Similarity=-0.069 Sum_probs=145.2
Q ss_pred CeEEEEEe---CCEEEEEe--CCcEEEEEcCCCcEEEEEeCC---CCCeEEEEE-------cCCC-eEEEEECCC-----
Q 004924 441 SISCFALR---GSHLFSAS--GGKISIFSLETFQTLATFANP---PPIATYFIL-------LPQD-LFAFGFDDS----- 499 (723)
Q Consensus 441 ~V~~v~~s---~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~---~~~v~~l~~-------~p~~-~l~sgs~dg----- 499 (723)
....|+|+ +..|+.+. .+.|++.|.+++......... ......++| ++++ .++++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 45678887 24555555 367889998877665544322 235789999 9999 677766554
Q ss_pred --cEEEEeCCC-CcEE-----EEEcCcCCcEEEEEEcCC-CCEEEEEeCCCcEEEEeCC-------CCcee----e----
Q 004924 500 --SILVHCPCT-KKTK-----AKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAV-------GWKKL----C---- 555 (723)
Q Consensus 500 --~I~iwd~~~-~~~~-----~~l~~~~~~i~~l~~spd-g~~l~s~s~dg~I~vwd~~-------~~~~~----~---- 555 (723)
.|.+++... |... ..+... .....++++|+ +.++++-..++.|..+|+. ++..- .
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 366776443 2221 122211 13356788994 5555566677889999987 54320 0
Q ss_pred -ceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE--cCCcEEEEECC--CCce--eEEecCC----C---------CCCC
Q 004924 556 -SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP--TLNH--TSQLVPD----K---------MDLP 615 (723)
Q Consensus 556 -~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s--~dg~I~vwd~~--~~~~--~~~~~~~----~---------h~~~ 615 (723)
...+..+.. . .....++|+|+|..|+.+ ..+.|+.++.. ++.. ...+.+. + .-..
T Consensus 299 ~~~~l~~~~~--~---~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~ 373 (496)
T 3kya_A 299 TFKQLFTIAD--P---SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNN 373 (496)
T ss_dssp TEEEEEECSS--S---SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSS
T ss_pred ccceeEecCC--C---CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCC
Confidence 001111211 1 456799999999966654 66789986653 3321 0122110 0 1123
Q ss_pred eE-EEEEe-------eCCcEEEEEeCCCcEEEEECCCCcEEEEeeccccc-------CCCCccC-------ccceEEEEE
Q 004924 616 IT-YATYS-------CDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA-------QPGTISL-------ELYPLVIAA 673 (723)
Q Consensus 616 v~-~l~~s-------pdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~-------~~g~~~~-------~v~~~~v~~ 673 (723)
.. .++.. ++|.+.++=..+..|+.++ .+|. +.++.+.... ..|..++ --.+..+++
T Consensus 374 P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIav 451 (496)
T 3kya_A 374 PCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVY 451 (496)
T ss_dssp EEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEE
T ss_pred CeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEE
Confidence 44 44554 4566666666778999998 5664 4444432110 0011111 123678999
Q ss_pred ecCCCCEEEEEECCCcEEEEecCCCce
Q 004924 674 HPLEPNRIALGLTNGRVHVIEPLESEV 700 (723)
Q Consensus 674 sp~d~~~las~s~Dg~v~iWd~~~~~~ 700 (723)
.+.++.+.++=+.+..||.++++...+
T Consensus 452 d~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 452 DDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred ECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 983266666666788999999876544
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.36 E-value=0.0076 Score=61.17 Aligned_cols=163 Identities=13% Similarity=0.028 Sum_probs=107.0
Q ss_pred CCeEEEEEcCCC-eEEEEE-CCCcEEEEeCCCCcEEEE-EcC----c--CCcEEEEEE---cCCCCEEEEEeC-------
Q 004924 479 PIATYFILLPQD-LFAFGF-DDSSILVHCPCTKKTKAK-LKG----H--QNRITCLAY---SLSLNVLVSSGA------- 539 (723)
Q Consensus 479 ~~v~~l~~~p~~-~l~sgs-~dg~I~iwd~~~~~~~~~-l~~----~--~~~i~~l~~---spdg~~l~s~s~------- 539 (723)
....++.|++.. .+..++ ..++|..||...+..... +.+ . ...+..+.| .|+++++++...
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 334578998866 666666 789999999886654433 222 0 114579999 688877775442
Q ss_pred ------CCcEEEEeCC---CCceeeceeeeeeecC------CCCCCCCeEEEEEccCCCEEEE-EcC-CcEEEEECCCCc
Q 004924 540 ------DAQLCVWDAV---GWKKLCSKFLHSFQTG------LVPETTIVNHIQFHPDQIHLLS-IHE-GQIDVYEAPTLN 602 (723)
Q Consensus 540 ------dg~I~vwd~~---~~~~~~~~~l~~~~~~------~~~~~~~v~~l~~spdg~~l~~-s~d-g~I~vwd~~~~~ 602 (723)
+..+..||+. +++......+.....+ ... .....++..++|+.-++ +.. +.|...+.. |+
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~--~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~ 169 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRP--FGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GK 169 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCC--EEEEEEEECTTSCEEEEEEESSCEEEEECTT-SC
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccc--cCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CC
Confidence 6779999999 6654333322211111 010 34789999999988887 566 777777774 33
Q ss_pred eeEEecC----CCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCC
Q 004924 603 HTSQLVP----DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 644 (723)
Q Consensus 603 ~~~~~~~----~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~ 644 (723)
.+..+.. .......+.++++|+|..|++...+|.|.-+|+.+
T Consensus 170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 3333211 11133467999999999988887799999999884
No 297
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.35 E-value=0.32 Score=54.58 Aligned_cols=331 Identities=11% Similarity=-0.008 Sum_probs=167.1
Q ss_pred ccccccCCCCCEEEEEeC-CCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEE-CCCcEEEEeccC
Q 004924 328 SRESTSLPDADSAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWKWQS 405 (723)
Q Consensus 328 ~~~~~~spdg~~la~~s~-dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s-~dg~i~iWd~~~ 405 (723)
....++.+.+..|..+.. .+.|..+++++. .....+ +.. .......+++.+.+..|+.+. ..+.|.+.+...
T Consensus 42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~---~~~~~v-~~~--~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG 115 (619)
T 3s94_A 42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKT---ESVQNV-VVS--GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG 115 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE-ECS--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eEEEEEEeCCCEEEEEECCCCeEEEEEccCC---CceEEE-EeC--CCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCC
Confidence 344446776666655544 566777777641 111222 221 235788999999766555554 467888887653
Q ss_pred CcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe--CCEEEEEe---CCcEEEEEcCCCcEEEEEeCCCCC
Q 004924 406 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATFANPPPI 480 (723)
Q Consensus 406 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~l~s~s---dg~I~vwd~~~~~~~~~~~~~~~~ 480 (723)
... ..+ .. ..-.....+++. +.+|+.+. .+.|...+++...........-..
T Consensus 116 ~~~------~~l----~~-------------~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~ 172 (619)
T 3s94_A 116 SLR------KVL----FW-------------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYW 172 (619)
T ss_dssp CSC------EEE----EC-------------SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSS
T ss_pred CCE------EEE----Ee-------------CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCC
Confidence 211 100 00 122334567776 45555544 356766676533222223334456
Q ss_pred eEEEEEcCCC-eEEEE-ECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeece-
Q 004924 481 ATYFILLPQD-LFAFG-FDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK- 557 (723)
Q Consensus 481 v~~l~~~p~~-~l~sg-s~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~- 557 (723)
...+++++++ .|+.+ ...+.|..+|++.........+.......+++..+ ...++-...+.|...|..+|+.....
T Consensus 173 P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~ 251 (619)
T 3s94_A 173 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIH 251 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECC
T ss_pred CcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEe
Confidence 7899999876 55544 45668999998754332222211122235666554 33444445678888888766422100
Q ss_pred -------eeeee-----ecCCCC---CCCCeEEEEE-----------ccCC---------------CEEEEEcCCcEEEE
Q 004924 558 -------FLHSF-----QTGLVP---ETTIVNHIQF-----------HPDQ---------------IHLLSIHEGQIDVY 596 (723)
Q Consensus 558 -------~l~~~-----~~~~~~---~~~~v~~l~~-----------spdg---------------~~l~~s~dg~I~vw 596 (723)
.+... +.+..+ ..+....+++ .|.| .+|+.+..+.|+..
T Consensus 252 ~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i 331 (619)
T 3s94_A 252 SDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRI 331 (619)
T ss_dssp SCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEE
T ss_pred cCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEE
Confidence 00000 000000 0000111111 1221 23445666678888
Q ss_pred ECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEE-eCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEec
Q 004924 597 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 675 (723)
Q Consensus 597 d~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sg-s~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp 675 (723)
++..........+-..-..+..++|++.+..|+.+ ...+.|+.++.........+.. + -.. +..+++.+
T Consensus 332 ~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~------~--~~~--p~GlAvD~ 401 (619)
T 3s94_A 332 SLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTA------Q--IAH--PDGIAVDW 401 (619)
T ss_dssp ESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS------S--CSC--CCEEEEET
T ss_pred ecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEEC------C--CCC--cCceEEec
Confidence 87654321111111124567889999866555554 4568899998876543333321 0 111 33677765
Q ss_pred CCCCEEEEEECCCcEEEEecCCC
Q 004924 676 LEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 676 ~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
..+++..+-+..+.|.+.++...
T Consensus 402 ~~~~lY~tD~~~~~I~v~~~~G~ 424 (619)
T 3s94_A 402 VARNLYWTDTGTDRIEVTRLNGT 424 (619)
T ss_dssp TTTEEEEEETTTTEEEEEETTSC
T ss_pred ccCcEEEEeCCCCcEEEEeCCCC
Confidence 34555555556677777776543
No 298
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.31 E-value=0.24 Score=55.70 Aligned_cols=198 Identities=9% Similarity=-0.067 Sum_probs=126.5
Q ss_pred CCeEEEEEe--CCEEEEEe--CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eE-EEEECCCcEEEEeCCCCcEEE
Q 004924 440 DSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF-AFGFDDSSILVHCPCTKKTKA 513 (723)
Q Consensus 440 ~~V~~v~~s--~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l-~sgs~dg~I~iwd~~~~~~~~ 513 (723)
..+..++|. ++.++.+. ++.|..+++........+.........+++.+.+ .| ++-...+.|.+.+++......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 457789998 56666655 6899999987554444443333445678888766 44 454556789999987554333
Q ss_pred EEcCcCCcEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE--c
Q 004924 514 KLKGHQNRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H 589 (723)
Q Consensus 514 ~l~~~~~~i~~l~~spdg~~l~s~s~--dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s--~ 589 (723)
.+...-.....++++|....|..... .+.|...++.+... ..+... . .....+++++++..|+.+ .
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~------~~l~~~-~---~~P~GlalD~~~~~LY~aD~~ 186 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER------TTLVPN-V---GRANGLTIDYAKRRLYWTDLD 186 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------EEEECS-C---SSEEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce------EEEECC-C---CCcceEEEccccCEEEEEECC
Confidence 33334456789999996556665553 56788888876321 112222 1 568899999988877764 6
Q ss_pred CCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEe
Q 004924 590 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 651 (723)
Q Consensus 590 dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~ 651 (723)
.+.|..+|+..... ..+.. .......+++.. +...++-...+.|...|..+|+....+
T Consensus 187 ~~~I~~~d~dG~~~-~v~~~--~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 187 TNLIESSNMLGLNR-EVIAD--DLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp TTEEEEEETTSCSC-EEEEE--CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCEEEEEcCCCCce-EEeec--cCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence 67899999965433 33322 244556777754 344444445788999998777654443
No 299
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.31 E-value=0.15 Score=51.69 Aligned_cols=199 Identities=11% Similarity=-0.000 Sum_probs=121.9
Q ss_pred EEEEEe--CCEEEEEe--CCcEEEEEcCCCcEEEEEeCC-----CC--CeEEEEE---cCCC-eEEEEE-----------
Q 004924 443 SCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANP-----PP--IATYFIL---LPQD-LFAFGF----------- 496 (723)
Q Consensus 443 ~~v~~s--~~~l~s~s--dg~I~vwd~~~~~~~~~~~~~-----~~--~v~~l~~---~p~~-~l~sgs----------- 496 (723)
-+++|. ...+..++ .++|..|+...+......... .. .+..+.| .|++ .+++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 367887 56666666 899999999766544332211 11 3578999 6888 555443
Q ss_pred --CCCcEEEEeCC---CCcEEEEEc--Cc-----------CCcEEEEEEcCCCCEEEEEeCC-CcEEEEeCCCCceeece
Q 004924 497 --DDSSILVHCPC---TKKTKAKLK--GH-----------QNRITCLAYSLSLNVLVSSGAD-AQLCVWDAVGWKKLCSK 557 (723)
Q Consensus 497 --~dg~I~iwd~~---~~~~~~~l~--~~-----------~~~i~~l~~spdg~~l~s~s~d-g~I~vwd~~~~~~~~~~ 557 (723)
.+..|..||+. +++.+.... .. ......++..++|+..++++.. +.|..++...... ...
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~-~~~ 174 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV-STF 174 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE-EEE
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE-eee
Confidence 25779999999 777665443 11 1348899999999999998888 8887777765211 111
Q ss_pred eeeeeecCCCCCCCCeEEEEEccCCCEEEEE-cCCcEEEEECCCCceeEEecC---CC--CCCCeEEE-EEeeCCcE-EE
Q 004924 558 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVP---DK--MDLPITYA-TYSCDGKC-IY 629 (723)
Q Consensus 558 ~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s-~dg~I~vwd~~~~~~~~~~~~---~~--h~~~v~~l-~~spdg~~-l~ 629 (723)
.+. .+.... ....+.++++|+|..|++. ..+.+..+|+.+.... .+.. .. .......+ ..-.+|+. |+
T Consensus 175 ~~~-~~~~~~--~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~vllV 250 (334)
T 2p9w_A 175 AWE-SGNGGQ--RPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNESVLV 250 (334)
T ss_dssp EEC-CCCSSS--CCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTEEEEE
T ss_pred eec-CCCccc--ccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCEEEEE
Confidence 111 111111 1346799999999988874 5889999998743220 1211 00 11223443 33357777 44
Q ss_pred EEeCCCcEEEEECCCCc
Q 004924 630 VSCKSGHVKVFDTSTLE 646 (723)
Q Consensus 630 sgs~dg~I~iwd~~~~~ 646 (723)
+.+..+.+.+.+....+
T Consensus 251 ~~~~~~~~~l~S~DgW~ 267 (334)
T 2p9w_A 251 GARAPYAISFRSWDNWK 267 (334)
T ss_dssp EEETTEEEEEECSSTTS
T ss_pred EcCCCCEEEEECCCCcc
Confidence 55556666666655443
No 300
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.30 E-value=0.18 Score=50.70 Aligned_cols=260 Identities=10% Similarity=0.045 Sum_probs=153.8
Q ss_pred eEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCC
Q 004924 348 KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK 427 (723)
Q Consensus 348 ~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~ 427 (723)
.|.|.|+.+. ....+.... --+.-.+|..+.+|.-. ..++.|+|+++...
T Consensus 50 ~VvIiDl~n~---~~~~Rrpi~-------AdsAIMnP~~~ViALra-g~~LQiFnletK~k------------------- 99 (365)
T 2xzh_A 50 QVVIIDMNDP---SNPIRRPIS-------ADSAIMNPASKVIALKA-GKTLQIFNIEMKSK------------------- 99 (365)
T ss_dssp EEEEEETTST---TSCEEEECC-------CSEEEECSSSSEEEEEE-TTEEEEEETTTTEE-------------------
T ss_pred EEEEEECCCC---CCccccccc-------cceeeeCCCccEEEEec-CCeEEEechHHhhh-------------------
Confidence 5777787752 222222221 12445588888666655 67899988875432
Q ss_pred eeeeeccCCCCCCCeEEEEEe-CCEEEEEeCCcEEEEEcCC-CcEEEEEeCC----CCCeEEEEEcCCC-eEE-EEE---
Q 004924 428 LVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLET-FQTLATFANP----PPIATYFILLPQD-LFA-FGF--- 496 (723)
Q Consensus 428 ~~~~~~~~~~h~~~V~~v~~s-~~~l~s~sdg~I~vwd~~~-~~~~~~~~~~----~~~v~~l~~~p~~-~l~-sgs--- 496 (723)
++.. .....|..=.|- .+.|+-.++..|.-|++.. ..+.+.+..| ...|.....+++. +++ +|-
T Consensus 100 --lks~---~~~e~VvfWkWis~~~L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~ 174 (365)
T 2xzh_A 100 --MKAH---TMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQ 174 (365)
T ss_dssp --EEEE---ECSSCEEEEEECSSSEEEEEESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEE
T ss_pred --hcce---ecCCccEEEEecCCCeEEEEcCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEecc
Confidence 1111 134566666676 8899999999999999974 4566666654 3456677778888 444 332
Q ss_pred ---CCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCC--C-CEEEEEeC---CCcEEEEeCCCC---c-eeeceeeee-e
Q 004924 497 ---DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS--L-NVLVSSGA---DAQLCVWDAVGW---K-KLCSKFLHS-F 562 (723)
Q Consensus 497 ---~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spd--g-~~l~s~s~---dg~I~vwd~~~~---~-~~~~~~l~~-~ 562 (723)
-.|.+.+|..+. +..+.+.||......+....+ . ..++.+.. .+.+++.++... . ....+...- +
T Consensus 175 ~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~f 253 (365)
T 2xzh_A 175 QNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFF 253 (365)
T ss_dssp TTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECC
T ss_pred CCccceeEEEEeecc-cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeC
Confidence 236788999774 566778888665544433221 1 23333332 258888888432 1 111111110 1
Q ss_pred ecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEE
Q 004924 563 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 641 (723)
Q Consensus 563 ~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd 641 (723)
+.... .+-..++..|+.-..++. +.-|.|++||++++.++..-+.. ...|...+-+.+..=+++....|.|.--.
T Consensus 254 ppea~--~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS--~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~ 329 (365)
T 2xzh_A 254 PPEAQ--NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVLSVC 329 (365)
T ss_dssp CTTCT--TCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEEEGGGTEEEEEETTCEEEEEE
T ss_pred Ccccc--CCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccC--CCceEEecccCCCCcEEEEcCCCEEEEEE
Confidence 11111 144567788877666666 79999999999999998776542 45555445444444445555677666655
Q ss_pred CCCCcE
Q 004924 642 TSTLEL 647 (723)
Q Consensus 642 ~~~~~~ 647 (723)
+....+
T Consensus 330 v~~~~i 335 (365)
T 2xzh_A 330 VEEENI 335 (365)
T ss_dssp ECTTTH
T ss_pred ECcccE
Confidence 555443
No 301
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.26 E-value=0.012 Score=63.26 Aligned_cols=154 Identities=10% Similarity=0.042 Sum_probs=98.6
Q ss_pred CeEEEEEcC-CC-eEEEEECCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCC-C----cEEEEeCCCCc
Q 004924 480 IATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-A----QLCVWDAVGWK 552 (723)
Q Consensus 480 ~v~~l~~~p-~~-~l~sgs~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~d-g----~I~vwd~~~~~ 552 (723)
....++++| ++ .|+++...+.|+.+|+.++...... ........++|+++|+.|+++... + .+..++.. +.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence 346889998 45 6666665588999998876544433 345668899999999966666542 2 23334433 22
Q ss_pred eeeceeeeeeecCCCCCCCCeEEEEEcc-CCCEEEEE-cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEE
Q 004924 553 KLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV 630 (723)
Q Consensus 553 ~~~~~~l~~~~~~~~~~~~~v~~l~~sp-dg~~l~~s-~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s 630 (723)
......+ ... .....++++| +|..+++. .++.|+.++..++......... .......++|+|+|++|+.
T Consensus 216 ~~~~~~l---~~~-----~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~-~~~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 216 FKVITEL---TKG-----QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ-DSGWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp SCSEEEE---EEC-----SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS-SSSCCEEEEECTTSSEEEE
T ss_pred eeeeeee---ccC-----CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC-CCCcceeEEEcCCCCEEEE
Confidence 2111111 111 3456889999 66655554 6789999999766542222221 1345778999999996655
Q ss_pred E-eCCCcEEEEECCC
Q 004924 631 S-CKSGHVKVFDTST 644 (723)
Q Consensus 631 g-s~dg~I~iwd~~~ 644 (723)
+ ...+.|+.++...
T Consensus 287 ~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 287 VVVNQHYILRSDYDW 301 (430)
T ss_dssp EETTTTEEEEEEEET
T ss_pred EECCCCEEEEEeCCc
Confidence 4 4568899987653
No 302
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.20 E-value=0.074 Score=59.76 Aligned_cols=225 Identities=8% Similarity=-0.043 Sum_probs=129.5
Q ss_pred EEEEeCCcEEEEEcCCCc-EEEEEeCCCCCeEEEEEcCCC-eEEEEE-CCCcEEEEeCCCCcE-EEEEcCcCCcEEEEEE
Q 004924 452 LFSASGGKISIFSLETFQ-TLATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHCPCTKKT-KAKLKGHQNRITCLAY 527 (723)
Q Consensus 452 l~s~sdg~I~vwd~~~~~-~~~~~~~~~~~v~~l~~~p~~-~l~sgs-~dg~I~iwd~~~~~~-~~~l~~~~~~i~~l~~ 527 (723)
++-+....|+..++.... ...........+..++|++.+ .++.+. ..+.|..++++.... ...+...-.....+++
T Consensus 12 ~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 12 LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp EEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred EEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 344446778888886543 222222334456799999876 555444 467899999875532 2333333357889999
Q ss_pred cCCCCEEEE-EeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE---cCCcEEEEECCCCce
Q 004924 528 SLSLNVLVS-SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPTLNH 603 (723)
Q Consensus 528 spdg~~l~s-~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s---~dg~I~vwd~~~~~~ 603 (723)
++.+..|+. -...+.|.+.++++.. ...+..... .....+++.|.+..|+.+ ..+.|...++. |..
T Consensus 92 D~~~~~ly~~d~~~~~I~v~~~dG~~------~~~l~~~~l---~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~ 161 (619)
T 3s94_A 92 DWLGEKLYWTDSETNRIEVSNLDGSL------RKVLFWQEL---DQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSS 161 (619)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCS------CEEEECSSC---SCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCS
T ss_pred EecCCEEEEEeCCCCEEEEEECCCCC------EEEEEeCCC---CCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCc
Confidence 996655554 4567889999998632 111221222 457789999976666553 34678888875 443
Q ss_pred eEEecCCCCCCCeEEEEEeeCCcEEEEEe-CCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEE
Q 004924 604 TSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 682 (723)
Q Consensus 604 ~~~~~~~~h~~~v~~l~~spdg~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la 682 (723)
...+.. ........+++++++..|+.+. ..+.|..+++............ . .+ +.++++.. + .+..
T Consensus 162 ~~~l~~-~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~-----~--~~---P~gi~~~~-~-~ly~ 228 (619)
T 3s94_A 162 RFIIIN-SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-----L--PH---PFALTLFE-D-ILYW 228 (619)
T ss_dssp CEEEEC-SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-------------------CCCEEESS-S-EEEE
T ss_pred eEEEEe-CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC-----C--CC---ceEEEEeC-C-EEEE
Confidence 333322 1256688999999776666554 4578999998765433322110 0 11 23566655 3 4444
Q ss_pred EEECCCcEEEEecCCCc
Q 004924 683 LGLTNGRVHVIEPLESE 699 (723)
Q Consensus 683 s~s~Dg~v~iWd~~~~~ 699 (723)
+-...+.|...|..+++
T Consensus 229 td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 229 TDWSTHSILACNKYTGE 245 (619)
T ss_dssp ECTTTCSEEEEESSSCC
T ss_pred ecCCCCEEEEEECCCCc
Confidence 44456788888887765
No 303
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.17 E-value=0.31 Score=50.94 Aligned_cols=261 Identities=10% Similarity=0.047 Sum_probs=156.7
Q ss_pred CeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCC
Q 004924 347 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS 426 (723)
Q Consensus 347 g~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~ 426 (723)
..|.|.|+.+. ....+.... --+.-.+|..+.+|.=. ..++.|+|+++...
T Consensus 48 ~~vvIiDl~~~---~~~~rrpi~-------AdsAIMnP~~~iiALra-g~~lQiFnle~K~k------------------ 98 (494)
T 1bpo_A 48 AQVVIIDMNDP---SNPIRRPIS-------ADSAIMNPASKVIALKA-GKTLQIFNIEMKSK------------------ 98 (494)
T ss_dssp CEEEEEETTST---TSCEEEECC-------CSEEEECSSSSCEEEEE-TTEEEEEETTTTEE------------------
T ss_pred CeEEEEECCCC---Ccceecccc-------cceeeeCCCCcEEEEec-CCeEEEEchHHhhh------------------
Confidence 35777777752 222222221 12455678887666554 67899988875332
Q ss_pred CeeeeeccCCCCCCCeEEEEEe-CCEEEEEeCCcEEEEEcCC-CcEEEEEeCC----CCCeEEEEEcCCC-eEE-EEE--
Q 004924 427 KLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLET-FQTLATFANP----PPIATYFILLPQD-LFA-FGF-- 496 (723)
Q Consensus 427 ~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~sdg~I~vwd~~~-~~~~~~~~~~----~~~v~~l~~~p~~-~l~-sgs-- 496 (723)
++... ....|..=.|- .+.|+-.++..|.-|++.. ..+.+.+..| ...|.....+++. +++ +|-
T Consensus 99 ---lks~~---~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~ 172 (494)
T 1bpo_A 99 ---MKAHT---MTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA 172 (494)
T ss_dssp ---EEEEE---CSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEE
T ss_pred ---hccee---cCCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecc
Confidence 11111 23456556666 8899999999999999964 3566666654 3456677778888 444 332
Q ss_pred ----CCCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCC---CEEEEEeCC---CcEEEEeCCCC----ceeeceeeee-
Q 004924 497 ----DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL---NVLVSSGAD---AQLCVWDAVGW----KKLCSKFLHS- 561 (723)
Q Consensus 497 ----~dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg---~~l~s~s~d---g~I~vwd~~~~----~~~~~~~l~~- 561 (723)
-.|.+.+|..+. +..+.+.||......+....+. ..++.+... +.+++.++... .....+...-
T Consensus 173 ~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~ 251 (494)
T 1bpo_A 173 QQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF 251 (494)
T ss_dssp ETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECC
T ss_pred cCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeee
Confidence 246788999774 4567788887665554443221 234444432 78999988542 1111111110
Q ss_pred eecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEE
Q 004924 562 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF 640 (723)
Q Consensus 562 ~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iw 640 (723)
++.... .+-..++..|+.-..++. +.-|.|++||++++.++..-+.. ...|...+-+....=+++....|.|.--
T Consensus 252 fppe~~--~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs--~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v 327 (494)
T 1bpo_A 252 FPPEAQ--NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVLSV 327 (494)
T ss_dssp CCTTST--TCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEEETTTTEEEEEETTCEEEEE
T ss_pred CCcccc--cCceeEEEecccCCEEEEEecCceEEEEecccceeeeeeccc--CCceEEecccCCCCcEEEEccCceEEEE
Confidence 111111 144567888887767766 79999999999999998776542 4555555555444445555577777666
Q ss_pred ECCCCcE
Q 004924 641 DTSTLEL 647 (723)
Q Consensus 641 d~~~~~~ 647 (723)
.+....+
T Consensus 328 ~v~e~~i 334 (494)
T 1bpo_A 328 CVEEENI 334 (494)
T ss_dssp EECTTTH
T ss_pred EEccccc
Confidence 6555443
No 304
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.13 E-value=0.054 Score=58.55 Aligned_cols=210 Identities=13% Similarity=0.000 Sum_probs=119.6
Q ss_pred CeEEEEEcCC-C-eEEEEE-CCCcEEEEeCCCCcEEEEEcCc---CCcEEEEEE-------cCCCCEEEEEeCCC-----
Q 004924 480 IATYFILLPQ-D-LFAFGF-DDSSILVHCPCTKKTKAKLKGH---QNRITCLAY-------SLSLNVLVSSGADA----- 541 (723)
Q Consensus 480 ~v~~l~~~p~-~-~l~sgs-~dg~I~iwd~~~~~~~~~l~~~---~~~i~~l~~-------spdg~~l~s~s~dg----- 541 (723)
....++|+|. + .|+++. ..+.|++.|..++......... ......++| +++|..|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4668999994 4 444444 4467999998877665544332 235889999 99999777776554
Q ss_pred --cEEEEeCCC-CceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E-cCCcEEEEECC-------CCce------
Q 004924 542 --QLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAP-------TLNH------ 603 (723)
Q Consensus 542 --~I~vwd~~~-~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s-~dg~I~vwd~~-------~~~~------ 603 (723)
.|.+++... +..........+... .....++++|++..|+. . .++.|+.+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-----~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-----KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-----SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred CceEEEEecCCCCceeecccceeeccC-----CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 266666443 222100000111111 23457889996555554 4 77789999987 5543
Q ss_pred -----eEE-ecCCCCCCCeEEEEEeeCCcEEEEE-eCCCcEEEEEC--CCCcEE--EEeecccccCCCCccC-----cc-
Q 004924 604 -----TSQ-LVPDKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDT--STLELR--CQINLTAYAQPGTISL-----EL- 666 (723)
Q Consensus 604 -----~~~-~~~~~h~~~v~~l~~spdg~~l~sg-s~dg~I~iwd~--~~~~~~--~~~~~~~~~~~g~~~~-----~v- 666 (723)
... +.. ........++|+|+|++|+.+ +....|+.++. .++... ..+.... -..|..++ ..
T Consensus 295 ~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~-g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 295 NNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY-KQSGYRDDVGTEARMN 372 (496)
T ss_dssp GCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBT-TBCCCBCCBGGGCBCS
T ss_pred ccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCC-CCCcccCCcccccccC
Confidence 112 222 224556799999999966555 45678888654 334321 2222210 00111111 11
Q ss_pred ceE-EEEEe-------cCCCCEEEEEECCCcEEEEecCCC
Q 004924 667 YPL-VIAAH-------PLEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 667 ~~~-~v~~s-------p~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
.+. .++.. + ++.+.++-+.+..|+.++. +|
T Consensus 373 ~P~~gv~vd~~~~~~~~-~g~lyVaD~~N~rIr~i~~-~G 410 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEE-EYDFYFVDRLNFCVRKVTP-EG 410 (496)
T ss_dssp SEEEEEEEECTTCCSSC-CEEEEEEEGGGTEEEEECT-TC
T ss_pred CCeEEEEEccccccccC-CCeEEEEECCCCEEEEEeC-CC
Confidence 133 33333 3 5667777677889999984 44
No 305
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.08 E-value=0.001 Score=76.24 Aligned_cols=228 Identities=11% Similarity=-0.003 Sum_probs=128.5
Q ss_pred EEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEE-ECCCcEEEEeCCC----CcEEEEEcCcCCcEEE
Q 004924 451 HLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG-FDDSSILVHCPCT----KKTKAKLKGHQNRITC 524 (723)
Q Consensus 451 ~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sg-s~dg~I~iwd~~~----~~~~~~l~~~~~~i~~ 524 (723)
+|+.+..+.|++.++.+.+....+.. ...+..++|++.+ .|+.+ ...+.|+.+++.+ ......+.........
T Consensus 379 ~ll~~~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~g 457 (699)
T 1n7d_A 379 YLFFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 457 (699)
T ss_dssp CBCCCCTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCC
T ss_pred eEEecCccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcce
Confidence 33444456778888876655443332 2345578999876 55544 4567899999875 2221222111123456
Q ss_pred EEEcCCC-CEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE--c-CCcEEEEECCC
Q 004924 525 LAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H-EGQIDVYEAPT 600 (723)
Q Consensus 525 l~~spdg-~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s--~-dg~I~vwd~~~ 600 (723)
+++.+.+ +++++-...+.|.++++.+... ..+..... .....++++|.+.+|+.+ . .+.|.++++..
T Consensus 458 lavD~~~g~LY~tD~~~~~I~v~d~dg~~~------~~l~~~~~---~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG 528 (699)
T 1n7d_A 458 LAVDWIHSNIYWTDSVLGTVSVADTKGVKR------KTLFREQG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 528 (699)
T ss_dssp EECCCSSSBCEECCTTTSCEEEEBSSSCCE------EEECCCSS---CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS
T ss_pred EEEEeeCCcEEEEeccCCeEEEEecCCCce------EEEEeCCC---CCcceEEEccCCCcEEEcccCCCCeEEEEeCCC
Confidence 7887544 4444445578899999876321 11111111 346788999976666553 2 37888888753
Q ss_pred CceeEEecCCCCCCCeEEEEEeeCCcEEEEE-eCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCC
Q 004924 601 LNHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 679 (723)
Q Consensus 601 ~~~~~~~~~~~h~~~v~~l~~spdg~~l~sg-s~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~ 679 (723)
.....+.. ........++|+|++..|+.+ +..+.|..+++........+.... ....+..+++.. +.
T Consensus 529 -~~~~~l~~-~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~--------~~~~P~glavd~--~~ 596 (699)
T 1n7d_A 529 -VDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK--------RLAHPFSLAVFE--DK 596 (699)
T ss_dssp -CCCCEESC-SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSS--------SCSSCCCCEEET--TE
T ss_pred -CCeeEEEe-CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCC--------cCCCceEeEEEC--CE
Confidence 33333321 113456689999986655544 456789999987544333222110 001122455554 34
Q ss_pred EEEEEECCCcEEEEecCCCce
Q 004924 680 RIALGLTNGRVHVIEPLESEV 700 (723)
Q Consensus 680 ~las~s~Dg~v~iWd~~~~~~ 700 (723)
++++....+.|..++..+++.
T Consensus 597 lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 597 VFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp EEEECSTTTCEEEEETTTEEE
T ss_pred EEEEeCCCCeEEEEEccCCCc
Confidence 555666678999999877654
No 306
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.97 E-value=0.38 Score=48.40 Aligned_cols=225 Identities=14% Similarity=0.136 Sum_probs=141.8
Q ss_pred CCEEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCC-CcEEEEEcCcC----CcEE
Q 004924 449 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KKTKAKLKGHQ----NRIT 523 (723)
Q Consensus 449 ~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~-~~~~~~l~~~~----~~i~ 523 (723)
.+.+|.-...++.++|+++.+.++.+.-.. .|.-=.|-.+..|+..+ +..|+-|++.. ..+.+.+..|. ..|.
T Consensus 78 ~~ViALrag~~LQiFnletK~klks~~~~e-~VvfWkWis~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QII 155 (365)
T 2xzh_A 78 SKVIALKAGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQII 155 (365)
T ss_dssp SSEEEEEETTEEEEEETTTTEEEEEEECSS-CEEEEEECSSSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEE
T ss_pred ccEEEEecCCeEEEechHHhhhhcceecCC-ccEEEEecCCCeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEE
Confidence 334444457889999999999988887543 55555676555333333 56899999874 46777776653 5677
Q ss_pred EEEEcCCCCEEEEEeC-------CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCC-----CEEEEE---
Q 004924 524 CLAYSLSLNVLVSSGA-------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-----IHLLSI--- 588 (723)
Q Consensus 524 ~l~~spdg~~l~s~s~-------dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg-----~~l~~s--- 588 (723)
.-..+++.++++..+- .|.+.+|..+.+ .....++|. .. -..+-.+| ..++.+
T Consensus 156 nY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-------~sQ~ieGha---a~--F~~~~~~g~~~~~~lf~fa~r~ 223 (365)
T 2xzh_A 156 NYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHA---AS--FAQFKMEGNAEESTLFCFAVRG 223 (365)
T ss_dssp EEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-------EEEEECCSE---EE--EEEECCTTCSSCEEEEEEEEEE
T ss_pred EEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-------ccceeeeee---ee--eEEEecCCCCCCceEEEEEEec
Confidence 7788999998765442 367888888763 223455663 11 12222222 233323
Q ss_pred -cCCcEEEEECCCC---c------eeEEe-cCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeeccccc
Q 004924 589 -HEGQIDVYEAPTL---N------HTSQL-VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA 657 (723)
Q Consensus 589 -~dg~I~vwd~~~~---~------~~~~~-~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~ 657 (723)
..++++|.++... . .+..+ .+........++..|+.-..++.-+.-|.|++||+++|.++..-...
T Consensus 224 ~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS--- 300 (365)
T 2xzh_A 224 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--- 300 (365)
T ss_dssp TTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC---
T ss_pred CCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccC---
Confidence 2268999998432 1 11112 22223566778999998889999999999999999999988765432
Q ss_pred CCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCC
Q 004924 658 QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 658 ~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
...+. ..+.+. ...=+++....|.|.--.+++.
T Consensus 301 -----~d~iF--~ta~~~-~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 301 -----GETIF--VTAPHE-ATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp -----SSCEE--EEEEEG-GGTEEEEEETTCEEEEEEECTT
T ss_pred -----CCceE--EecccC-CCCcEEEEcCCCEEEEEEECcc
Confidence 44455 333444 2334555557887776666554
No 307
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.67 E-value=0.26 Score=49.65 Aligned_cols=184 Identities=9% Similarity=0.017 Sum_probs=94.7
Q ss_pred CCEEEEEe-C----CcEEEEEcCCCcEEEEEeCC--CCCeEEEEEcCCC-eEEEEECC------CcEEEEeCCCCcEEEE
Q 004924 449 GSHLFSAS-G----GKISIFSLETFQTLATFANP--PPIATYFILLPQD-LFAFGFDD------SSILVHCPCTKKTKAK 514 (723)
Q Consensus 449 ~~~l~s~s-d----g~I~vwd~~~~~~~~~~~~~--~~~v~~l~~~p~~-~l~sgs~d------g~I~iwd~~~~~~~~~ 514 (723)
+..++.|+ + ..+.+||+.+++....-... .....++.+ ++ .++.|+.+ ..+.+||..+.+-...
T Consensus 56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~ 133 (306)
T 3ii7_A 56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK 133 (306)
T ss_dssp TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence 55566665 4 57889999887654332211 111222222 56 66677655 4689999887654332
Q ss_pred E--cCcCCcEEEEEEcCCCCEEEEEeC---------CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCC
Q 004924 515 L--KGHQNRITCLAYSLSLNVLVSSGA---------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 583 (723)
Q Consensus 515 l--~~~~~~i~~l~~spdg~~l~s~s~---------dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~ 583 (723)
- ......-..+. -+++.++.|+. -..+.+||..+..- ..+..++... ... +++.. +++
T Consensus 134 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W---~~~~~~p~~r----~~~-~~~~~-~~~ 202 (306)
T 3ii7_A 134 PSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW---TELCPMIEAR----KNH-GLVFV-KDK 202 (306)
T ss_dssp CCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEE---EEECCCSSCC----BSC-EEEEE-TTE
T ss_pred CCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeE---EECCCccchh----hcc-eEEEE-CCE
Confidence 1 11111111222 25666666653 34588999987532 2222222221 111 22222 455
Q ss_pred EEEE-EcC-----CcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC-----CcEEEEECCCCcE
Q 004924 584 HLLS-IHE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLEL 647 (723)
Q Consensus 584 ~l~~-s~d-----g~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d-----g~I~iwd~~~~~~ 647 (723)
.++. |.+ ..+.+||+.+.+-...-...........+. -++..++.|+.+ ..+.+||..+.+-
T Consensus 203 i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 203 IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA--VGSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE--ETTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE--ECCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 5555 322 468999998765432211111111222222 277788888754 5688899887653
No 308
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.65 E-value=0.53 Score=48.52 Aligned_cols=197 Identities=13% Similarity=0.087 Sum_probs=109.9
Q ss_pred CeEEEEEcCCCeEEEEE-------------CCCcEEEEeCCC--CcEE-EEEcC-----cCCcEEEEEEcC--CCC-EEE
Q 004924 480 IATYFILLPQDLFAFGF-------------DDSSILVHCPCT--KKTK-AKLKG-----HQNRITCLAYSL--SLN-VLV 535 (723)
Q Consensus 480 ~v~~l~~~p~~~l~sgs-------------~dg~I~iwd~~~--~~~~-~~l~~-----~~~~i~~l~~sp--dg~-~l~ 535 (723)
..-.+...|+|.+++++ .+|.|.++|.++ ++.. ..+.+ .......+.+.+ +|. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34467778888334443 689999999874 3321 12222 224566777755 454 344
Q ss_pred EE-eC--CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEc----C--------------CcEE
Q 004924 536 SS-GA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH----E--------------GQID 594 (723)
Q Consensus 536 s~-s~--dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~----d--------------g~I~ 594 (723)
++ .. +.+|.+|++..+... ...+.++..... ...+.+++.++|.+.++.. | |.|+
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~-~~~~~~~~g~~~---~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKS-LLHLKTIRHKLL---PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTE-EEEEEEECCTTC---SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEECCCCCCeEEEEEEECCCCE-EEEEeccccCCC---CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence 44 33 467888877653211 112222222212 5788999999998777642 1 3455
Q ss_pred EEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEe-CCCcEEEEECCC-CcEEE--EeecccccCCCCccCccceEE
Q 004924 595 VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTST-LELRC--QINLTAYAQPGTISLELYPLV 670 (723)
Q Consensus 595 vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs-~dg~I~iwd~~~-~~~~~--~~~~~~~~~~g~~~~~v~~~~ 670 (723)
.+|. ++. ..+.. .-...+.++||||++.|+.+. ..+.|+.|++.. +++.. .+.. .. .+-.
T Consensus 207 r~d~--~~~-~~~~~--~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~---------~g--~PDG 270 (355)
T 3sre_A 207 YYSP--NDV-RVVAE--GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF---------DT--LVDN 270 (355)
T ss_dssp EECT--TCC-EEEEE--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC---------SS--EEEE
T ss_pred EEEC--CeE-EEeec--CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC---------CC--CCce
Confidence 5554 332 22211 145578999999998887665 468899999863 44322 2211 11 1236
Q ss_pred EEEecCCCCEEEEEECC-CcEEEEecC
Q 004924 671 IAAHPLEPNRIALGLTN-GRVHVIEPL 696 (723)
Q Consensus 671 v~~sp~d~~~las~s~D-g~v~iWd~~ 696 (723)
++..+.+|++.+++..+ +.|..|++.
T Consensus 271 i~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 271 ISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred EEEeCCCCcEEEEecCCceEEEEECCC
Confidence 77776227777766644 344444443
No 309
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.65 E-value=0.77 Score=52.91 Aligned_cols=233 Identities=12% Similarity=0.116 Sum_probs=133.7
Q ss_pred CCCeEEEEEe-CCEEEEEeCCcEEEEEcCCCcEEEEEe----CCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEEE
Q 004924 439 KDSISCFALR-GSHLFSASGGKISIFSLETFQTLATFA----NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKA 513 (723)
Q Consensus 439 ~~~V~~v~~s-~~~l~s~sdg~I~vwd~~~~~~~~~~~----~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~~ 513 (723)
...|.++.-. ..++-.|...-+..||-.+ ...+. .....|.++....+|.|..|+.+| +..||..+.+...
T Consensus 21 ~n~V~~I~qD~~G~lWigT~~GL~ryDG~~---~~~~~~~~~~~~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~ 96 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIGSNKGLFSYDGYS---TQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYEQ 96 (758)
T ss_dssp CCCEEEEEECTTSCEEEEESSCEEEECSSC---EEECSCTTSTTSSCEEEEEEETTTEEEEEETTE-EEEEETTTTEECC
T ss_pred cceEEEEEECCCCCEEEEECCCccccCCCc---eEEEEccCCCCCceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEEC
Confidence 5678888887 5666666743466676432 22221 123468888877777666777655 7899987764322
Q ss_pred EEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcE
Q 004924 514 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQI 593 (723)
Q Consensus 514 ~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I 593 (723)
........|.++.. .+| .+..++.+ .+..+|..++.... +.....+.. ...|.++...++|...+.+. +.+
T Consensus 97 ~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~---~~~~~~~l~--~~~i~~i~~d~~g~lWigt~-~Gl 167 (758)
T 3ott_A 97 PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTS---FDTRRNGLP--NNTIYSIIRTKDNQIYVGTY-NGL 167 (758)
T ss_dssp CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEE---ECHHHHCCS--CSCEEEEEECTTCCEEEEET-TEE
T ss_pred cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEE---eccCCCCcC--CCeEEEEEEcCCCCEEEEeC-CCH
Confidence 11112235776654 345 45556655 67888987643211 100011111 14688888888888776554 458
Q ss_pred EEEECCCCceeEEecCCC----CCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceE
Q 004924 594 DVYEAPTLNHTSQLVPDK----MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPL 669 (723)
Q Consensus 594 ~vwd~~~~~~~~~~~~~~----h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 669 (723)
..+|..+++.. .+.... ....|.++...+++..|..|+. +-+..++..+++....... ....+ .
T Consensus 168 ~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l--------~~~~i--~ 235 (758)
T 3ott_A 168 CRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAF--------HNNSI--K 235 (758)
T ss_dssp EEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEE--------EEEEE--E
T ss_pred hhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCC--------CCCeE--E
Confidence 88898766542 222111 1234888888777765555654 4588899887754322111 02223 3
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 670 VIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 670 ~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
++...+ ++.+.+ |+. +.+.+++..+++
T Consensus 236 ~i~~d~-~g~lWi-gT~-~Gl~~~~~~~~~ 262 (758)
T 3ott_A 236 SLALDG-NGDLLA-GTD-NGLYVYHNDTTP 262 (758)
T ss_dssp EEEECT-TCCEEE-EET-TEEEEECCTTSC
T ss_pred EEEEcC-CCCEEE-EeC-CceeEEecCCCc
Confidence 676666 555544 444 458888876654
No 310
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.63 E-value=0.31 Score=49.05 Aligned_cols=227 Identities=11% Similarity=0.017 Sum_probs=115.3
Q ss_pred EEEEEe-C--CcEEEEEcCCCcEEEEE--eCCCCCeEEEEEcCCC-eEEEEECC----CcEEEEeCCCCcEEEEEc--Cc
Q 004924 451 HLFSAS-G--GKISIFSLETFQTLATF--ANPPPIATYFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAKLK--GH 518 (723)
Q Consensus 451 ~l~s~s-d--g~I~vwd~~~~~~~~~~--~~~~~~v~~l~~~p~~-~l~sgs~d----g~I~iwd~~~~~~~~~l~--~~ 518 (723)
.++.|+ + ..+.+||..+++....- ........++. -++ .++.|+.+ ..+.+||+.+++-...-. ..
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 344555 2 57899999886644321 11111122222 356 66777654 578899988875433221 11
Q ss_pred CCcEEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-Ec--
Q 004924 519 QNRITCLAYSLSLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-- 589 (723)
Q Consensus 519 ~~~i~~l~~spdg~~l~s~s~d------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~-- 589 (723)
......+.+ +++.++.|+.+ ..+.+||..+..- ..+..++.... .. +++.. +++.++. |.
T Consensus 92 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W---~~~~~~p~~r~----~~-~~~~~-~~~iyv~GG~~~ 160 (306)
T 3ii7_A 92 RDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESW---HTKPSMLTQRC----SH-GMVEA-NGLIYVCGGSLG 160 (306)
T ss_dssp CBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEE---EEECCCSSCCB----SC-EEEEE-TTEEEEECCEES
T ss_pred ccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCce---EeCCCCcCCcc----ee-EEEEE-CCEEEEECCCCC
Confidence 111122222 56777777765 4588999887532 22222222211 11 22222 4555554 32
Q ss_pred -------CCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC-----CcEEEEECCCCcEEEEeeccccc
Q 004924 590 -------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYA 657 (723)
Q Consensus 590 -------dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~~~~~ 657 (723)
-..+.+||..+.+-... ........-.+++ .-+++.++.|+.+ ..+.+||..+.+-... .. .
T Consensus 161 ~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~-~~---~ 234 (306)
T 3ii7_A 161 NNVSGRVLNSCEVYDPATETWTEL-CPMIEARKNHGLV-FVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV-SP---M 234 (306)
T ss_dssp CTTTCEECCCEEEEETTTTEEEEE-CCCSSCCBSCEEE-EETTEEEEECCEETTEEBCCEEEEETTTTEEEEC-CC---C
T ss_pred CCCcccccceEEEeCCCCCeEEEC-CCccchhhcceEE-EECCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC-CC---C
Confidence 34589999987754322 1111111111222 2367777777654 4688999988753322 11 1
Q ss_pred CCCCccCccceEEEEEecCCCCEEEEEECC-----CcEEEEecCCCceeeecC
Q 004924 658 QPGTISLELYPLVIAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWGKL 705 (723)
Q Consensus 658 ~~g~~~~~v~~~~v~~sp~d~~~las~s~D-----g~v~iWd~~~~~~~w~~~ 705 (723)
+.. . ....++.+ ++.+++.||.+ ..+.+||+.+. .|...
T Consensus 235 p~~--r--~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~--~W~~~ 278 (306)
T 3ii7_A 235 PWK--G--VTVKCAAV---GSIVYVLAGFQGVGRLGHILEYNTETD--KWVAN 278 (306)
T ss_dssp SCC--B--SCCEEEEE---TTEEEEEECBCSSSBCCEEEEEETTTT--EEEEE
T ss_pred CCC--c--cceeEEEE---CCEEEEEeCcCCCeeeeeEEEEcCCCC--eEEeC
Confidence 111 0 11112222 46788888754 46788888775 47653
No 311
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.0026 Score=65.34 Aligned_cols=201 Identities=6% Similarity=-0.034 Sum_probs=109.4
Q ss_pred eEEEEECCCcEEEEeCCCCcEEEEEcCc-CCcEEEEEE--cC-CCCEEEEE-eCCCcEEEEeCCCCceeeceeeeeeecC
Q 004924 491 LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAY--SL-SLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTG 565 (723)
Q Consensus 491 ~l~sgs~dg~I~iwd~~~~~~~~~l~~~-~~~i~~l~~--sp-dg~~l~s~-s~dg~I~vwd~~~~~~~~~~~l~~~~~~ 565 (723)
.+++++.||.|.-+|..+|+....++.. ..++....- .+ ++..++.. +.||.|..+|..+|.......+..+..
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~- 90 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS- 90 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT-
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee-
Confidence 7889999999999999999999888654 122222110 01 22333333 589999999998874332211111110
Q ss_pred CCCCCCCeEE---EEE------ccCCCEEEEEcCCcEEEEECCCCceeEEecCCCCCCCe-----EEEEEe-----eCCc
Q 004924 566 LVPETTIVNH---IQF------HPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPI-----TYATYS-----CDGK 626 (723)
Q Consensus 566 ~~~~~~~v~~---l~~------spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h~~~v-----~~l~~s-----pdg~ 626 (723)
. .++.. ..+ +.++..++.+.+|.+...|+.+|+.+..+........+ .+.... ..+.
T Consensus 91 -~---SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 91 -T---SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp -T---CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC
T ss_pred -c---cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC
Confidence 0 12221 001 13444444479999999999999999888653211111 111110 1235
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCceee
Q 004924 627 CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW 702 (723)
Q Consensus 627 ~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~~~w 702 (723)
.|+.|..+..+.+.+ ++|+ +..+....+.+... ...+. ..-..+. ++.+ +.++.||.|.-+|..+|+.+|
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~-~~~~~-~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVL-DVPLA-LQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTT-THHHH-TTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEeccccccccc-ccccc-ccccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 677777777777777 4564 33332211111000 00000 0000112 3555 457899999999999999999
No 312
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.61 E-value=0.82 Score=47.24 Aligned_cols=230 Identities=10% Similarity=0.049 Sum_probs=121.6
Q ss_pred CCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCc-EEEEEe---CCCCCeEEEEEcCC----CeEEEEEC----C----CcE
Q 004924 440 DSISCFALR-GSHLFSAS-GGKISIFSLETFQ-TLATFA---NPPPIATYFILLPQ----DLFAFGFD----D----SSI 501 (723)
Q Consensus 440 ~~V~~v~~s-~~~l~s~s-dg~I~vwd~~~~~-~~~~~~---~~~~~v~~l~~~p~----~~l~sgs~----d----g~I 501 (723)
.....++|. +..++++. +|.|.+++ .+++ .+..+. ........++++|+ +.|+++.. + +.|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 446788998 44455556 89999997 3454 222221 22356789999998 44444332 3 567
Q ss_pred EEEeCCCC--c-----EE-EEEcC-cCCcEEEEEEcCCCCEEEEEeC-------------CCcEEEEeCCCCceeece--
Q 004924 502 LVHCPCTK--K-----TK-AKLKG-HQNRITCLAYSLSLNVLVSSGA-------------DAQLCVWDAVGWKKLCSK-- 557 (723)
Q Consensus 502 ~iwd~~~~--~-----~~-~~l~~-~~~~i~~l~~spdg~~l~s~s~-------------dg~I~vwd~~~~~~~~~~-- 557 (723)
..|+...+ . .+ ..+.. .......++|.|||.+.++.+. .|.|.-++.... .....
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~npf 186 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPADNPF 186 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTTSSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCCCCC
Confidence 77876644 1 11 11221 1123467999999987666432 144555555431 00000
Q ss_pred -eeeeeecCCCCCCCCeEEEEEcc-CCCEEEEE--cCC--cEEEEECCC--------C--------ceeEEecCCCCCCC
Q 004924 558 -FLHSFQTGLVPETTIVNHIQFHP-DQIHLLSI--HEG--QIDVYEAPT--------L--------NHTSQLVPDKMDLP 615 (723)
Q Consensus 558 -~l~~~~~~~~~~~~~v~~l~~sp-dg~~l~~s--~dg--~I~vwd~~~--------~--------~~~~~~~~~~h~~~ 615 (723)
....+..++ .....++|+| +|..+++- .+. .|.+..... + .++..+. .....
T Consensus 187 ~~~~i~a~G~----rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~--~~~~a 260 (354)
T 3a9g_A 187 PNSPIWSYGH----RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG--SETWA 260 (354)
T ss_dssp TTCCEEEECC----SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT--TCCCC
T ss_pred CCCcEEEEcc----CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC--CCCcC
Confidence 001122233 3466899999 67766662 222 344332110 0 1112221 11345
Q ss_pred eEEEEEe-------eCCcEEEEEeCCCcEEEEECCCC-cEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEE
Q 004924 616 ITYATYS-------CDGKCIYVSCKSGHVKVFDTSTL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 685 (723)
Q Consensus 616 v~~l~~s-------pdg~~l~sgs~dg~I~iwd~~~~-~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 685 (723)
...++|. .+|.++++....+.|...++... +...... +.. + ..-.+.++++.| ||.+.++..
T Consensus 261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~---~~~-~---~~~rp~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIST---FFK-N---VFGRLRDVVIDD-DGGILISTS 330 (354)
T ss_dssp EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEE---ECT-T---TSCCEEEEEECT-TSCEEEEEC
T ss_pred CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceee---ecc-C---CCCCeeEEEECC-CCcEEEEEe
Confidence 7788883 56777777777788888888753 3221111 110 1 112355899999 787666653
No 313
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=96.57 E-value=0.0014 Score=51.42 Aligned_cols=61 Identities=11% Similarity=0.262 Sum_probs=48.9
Q ss_pred CcccchHHHHHHHHHHhhhhhhHHHHHHHhhhccccccc--hhhHHhhhcCChHHHHHHHhhc
Q 004924 123 FEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFFDI--NYFREYITSGEWDNAEKYLSAF 183 (723)
Q Consensus 123 ~~~~~~~evirlI~q~L~e~G~~~s~~~L~~Es~i~~~~--~~l~~~i~~G~w~~~~~~l~~l 183 (723)
+...+++|+.+-|++||..+||.+++.+|.+|.++..+- ..-.+.+++-.|..++++-+.+
T Consensus 5 Lt~rQ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKKI 67 (88)
T 1uuj_A 5 LSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKV 67 (88)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHHH
Confidence 455788999999999999999999999999999988751 2234566777888887776654
No 314
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.54 E-value=0.27 Score=49.33 Aligned_cols=222 Identities=11% Similarity=0.075 Sum_probs=111.6
Q ss_pred CcEEEEEcCCCcEEEEEeCCCCCe-EEEEEcCCC-eEEEEECC-----CcEEEEeCCCCcEEEEE--cCcCCcEEEEEEc
Q 004924 458 GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKAKL--KGHQNRITCLAYS 528 (723)
Q Consensus 458 g~I~vwd~~~~~~~~~~~~~~~~v-~~l~~~p~~-~l~sgs~d-----g~I~iwd~~~~~~~~~l--~~~~~~i~~l~~s 528 (723)
..+..||+.+.+....-..+.... .+++. -++ .++.|+.+ ..+.+||..+.+-...- .........+.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~- 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL- 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-
Confidence 468889988765433211111111 12222 256 66677654 35889998876533221 111111122222
Q ss_pred CCCCEEEEEeCCC-----cEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-Ec-------CCcEEE
Q 004924 529 LSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-------EGQIDV 595 (723)
Q Consensus 529 pdg~~l~s~s~dg-----~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~-------dg~I~v 595 (723)
++..++.|+.++ .+.+||..+.+- ..+..++... ... +++.. +++.++. |. -..+.+
T Consensus 108 -~~~iyv~GG~~~~~~~~~~~~~d~~~~~W---~~~~~~p~~r----~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~ 177 (302)
T 2xn4_A 108 -NGLLYAVGGFDGSTGLSSVEAYNIKSNEW---FHVAPMNTRR----SSV-GVGVV-GGLLYAVGGYDVASRQCLSTVEC 177 (302)
T ss_dssp -TTEEEEEEEECSSCEEEEEEEEETTTTEE---EEECCCSSCC----BSC-EEEEE-TTEEEEECCEETTTTEECCCEEE
T ss_pred -CCEEEEEcCCCCCccCceEEEEeCCCCeE---eecCCCCCcc----cCc-eEEEE-CCEEEEEeCCCCCCCccccEEEE
Confidence 567777777553 477888887532 2222222221 111 22222 4555554 32 235899
Q ss_pred EECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC-----CcEEEEECCCCcEEEEeecccccCCCCccCccceEE
Q 004924 596 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV 670 (723)
Q Consensus 596 wd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 670 (723)
||+.+.+-...-......... +++ .-+++.++.|+.+ ..+.+||..+.+-...-. .+..... . +
T Consensus 178 yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~~~~r~~----~-~ 246 (302)
T 2xn4_A 178 YNATTNEWTYIAEMSTRRSGA-GVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD----MNMCRRN----A-G 246 (302)
T ss_dssp EETTTTEEEEECCCSSCCBSC-EEE-EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC----CSSCCBS----C-E
T ss_pred EeCCCCcEEECCCCccccccc-cEE-EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC----CCCcccc----C-e
Confidence 999876543321111111111 222 2367777777764 468999998875433211 1111111 1 2
Q ss_pred EEEecCCCCEEEEEECCC-----cEEEEecCCCceeeecCC
Q 004924 671 IAAHPLEPNRIALGLTNG-----RVHVIEPLESEVEWGKLP 706 (723)
Q Consensus 671 v~~sp~d~~~las~s~Dg-----~v~iWd~~~~~~~w~~~~ 706 (723)
++.. ++.+++.|+.++ .+.+||+.+. .|...+
T Consensus 247 ~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~ 283 (302)
T 2xn4_A 247 VCAV--NGLLYVVGGDDGSCNLASVEYYNPTTD--KWTVVS 283 (302)
T ss_dssp EEEE--TTEEEEECCBCSSSBCCCEEEEETTTT--EEEECS
T ss_pred EEEE--CCEEEEECCcCCCcccccEEEEcCCCC--eEEECC
Confidence 2222 567778887654 4889999876 487643
No 315
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.52 E-value=0.19 Score=52.51 Aligned_cols=168 Identities=13% Similarity=0.025 Sum_probs=101.8
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeec-CCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCc----
Q 004924 528 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT-GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN---- 602 (723)
Q Consensus 528 spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~-~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~---- 602 (723)
..+|..++.+- ++.||.-++..+. ..+.+. .+. -.. ..|..+..+|+|++||...+..|.|..+..+.
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~--~Yk~L~-~~~~i~f---~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDS--LYHSLN-FSRHLVL---DDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVE 101 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCS--SCEEEE-CTTTCCC---CTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCC
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCC--cceEEe-cCccccc---CceeEEEECCCCCEEEEecCCeEEEEEecCccccCc
Confidence 34555555443 4677777776431 112222 221 011 36788999999999999888899999987322
Q ss_pred --------eeEEecCCC----CCCCeEEEEEeeC---CcEEEEEeCCCcEEEEECCCCcEEE-EeecccccCCCCccCcc
Q 004924 603 --------HTSQLVPDK----MDLPITYATYSCD---GKCIYVSCKSGHVKVFDTSTLELRC-QINLTAYAQPGTISLEL 666 (723)
Q Consensus 603 --------~~~~~~~~~----h~~~v~~l~~spd---g~~l~sgs~dg~I~iwd~~~~~~~~-~~~~~~~~~~g~~~~~v 666 (723)
..+.+..+. ...+|..+.|+|- +..|++-..|+.|++||+....... .+.... ...|-.....
T Consensus 102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~-~~fg~d~~~~ 180 (452)
T 3pbp_A 102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPN-NSFGLDARVN 180 (452)
T ss_dssp CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCC-SEEESCSSCC
T ss_pred ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccc-cccCCCcccc
Confidence 112333211 2567999999984 5689999999999999998633211 232110 0001111113
Q ss_pred ceEEEEEecCCCCEEEEEE--CCCcEEEEecCCCceeeecC
Q 004924 667 YPLVIAAHPLEPNRIALGL--TNGRVHVIEPLESEVEWGKL 705 (723)
Q Consensus 667 ~~~~v~~sp~d~~~las~s--~Dg~v~iWd~~~~~~~w~~~ 705 (723)
.+.+++|.+ ++-.|...+ .+|.|+-.-+--+. +|..+
T Consensus 181 ev~S~~Fg~-~~lTLYvl~~t~~GDIYAlcP~LP~-~~~~~ 219 (452)
T 3pbp_A 181 DITDLEFSK-DGLTLYCLNTTEGGDIFAFYPFLPS-VLLLN 219 (452)
T ss_dssp CEEEEEECT-TSSCEEEEECTTSCEEEEESSCCCS-EEECC
T ss_pred eEEEEEEcC-CCcEEEEEecCCCCCEEEECCCCcc-ccccC
Confidence 355899998 676566544 77888777766555 46554
No 316
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.46 E-value=1.1 Score=46.91 Aligned_cols=226 Identities=13% Similarity=0.138 Sum_probs=141.5
Q ss_pred CEEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCC-CcEEEEEcCcC----CcEEE
Q 004924 450 SHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KKTKAKLKGHQ----NRITC 524 (723)
Q Consensus 450 ~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~-~~~~~~l~~~~----~~i~~ 524 (723)
+.+|.-...++.|+|+++.+.++.+.-... |.-=.|-.+..|+..+ +..|+-|++.. ..+.+.|..|. ..|..
T Consensus 78 ~iiALrag~~lQiFnle~K~klks~~~~e~-VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIIn 155 (494)
T 1bpo_A 78 KVIALKAGKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIIN 155 (494)
T ss_dssp SCEEEEETTEEEEEETTTTEEEEEEECSSC-CCEEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEE
T ss_pred cEEEEecCCeEEEEchHHhhhhcceecCCC-ceEEEecCCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEE
Confidence 344444578999999999999888875554 4344565444333332 56899999864 46777776653 56777
Q ss_pred EEEcCCCCEEEEEeC-------CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccC--C-CEEEEE----cC
Q 004924 525 LAYSLSLNVLVSSGA-------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--Q-IHLLSI----HE 590 (723)
Q Consensus 525 l~~spdg~~l~s~s~-------dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spd--g-~~l~~s----~d 590 (723)
-..+++.++++..+- .|.+.+|.++.+ +....++|. ..-..+.+..+ . ..++.+ ..
T Consensus 156 Y~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-------~sQ~ieGha---a~F~~~~~~g~~~~~~lf~fa~r~~~g 225 (494)
T 1bpo_A 156 YRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHA---ASFAQFKMEGNAEESTLFCFAVRGQAG 225 (494)
T ss_dssp EEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-------CEEEECCSE---EEEEEEECTTCSSEEEEEEEEECSTTC
T ss_pred EEECCCCCeEEEEeecccCCcccceEEEeecccc-------ccchheeee---eeeEEEecCCCCCCceEEEEEEecCCC
Confidence 788999999765432 367888888763 223455663 22222222211 1 223323 23
Q ss_pred CcEEEEECCCC---c------eeEE-ecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCC
Q 004924 591 GQIDVYEAPTL---N------HTSQ-LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG 660 (723)
Q Consensus 591 g~I~vwd~~~~---~------~~~~-~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g 660 (723)
+.++|.++... . .+.. +.+........++..|+.-..++.-+.-|.|++||+++|.++..-...
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs------ 299 (494)
T 1bpo_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS------ 299 (494)
T ss_dssp CEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC------
T ss_pred cEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeeccc------
Confidence 78999998532 1 1111 222223566778999998889999999999999999999987665431
Q ss_pred CccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCC
Q 004924 661 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 661 ~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~ 698 (723)
...+. ..+.+. ...=+++....|.|.--.+++.
T Consensus 300 --~~~iF--~t~~~~-~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 300 --GETIF--VTAPHE-ATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp --SSCEE--EEEEET-TTTEEEEEETTCEEEEEEECTT
T ss_pred --CCceE--EecccC-CCCcEEEEccCceEEEEEEccc
Confidence 44455 334444 3344555567887776666554
No 317
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.44 E-value=0.23 Score=51.96 Aligned_cols=158 Identities=13% Similarity=0.068 Sum_probs=98.4
Q ss_pred CCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCcc-ccc-c
Q 004924 335 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ-SLE-E 412 (723)
Q Consensus 335 pdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~-~~g-~ 412 (723)
-+|..++++- ++.||.-++.. ....+.+.++...--+.|..+..||+|++||..+. .+|.|-.+..+.. ..+ .
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~---~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLT---DSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTT---CSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHH
T ss_pred cCCCEEEEEE-CCEEEEEECCC---CCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccc
Confidence 3455555555 47777777764 23566665552001336888999999999888765 6888888773322 111 0
Q ss_pred cceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-----CCEEEEEe-CCcEEEEEcCCCc--EEEEEe---------
Q 004924 413 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFSLETFQ--TLATFA--------- 475 (723)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-----~~~l~s~s-dg~I~vwd~~~~~--~~~~~~--------- 475 (723)
....+.++.|....-. .....+|..+.|+ +..|++-. |+.|++||+.... +. .+.
T Consensus 105 ~~~~~q~~ty~l~~~~-------~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d 176 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEE-------VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLD 176 (452)
T ss_dssp HHHTTEEEEEEGGGCC---------CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESC
T ss_pred cccccceeEEEcCCcc-------cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCC
Confidence 0122233445543211 0246889999999 66777777 9999999997521 12 232
Q ss_pred CCCCCeEEEEEcCCC-eEEEEE--CCCcEEEEe
Q 004924 476 NPPPIATYFILLPQD-LFAFGF--DDSSILVHC 505 (723)
Q Consensus 476 ~~~~~v~~l~~~p~~-~l~sgs--~dg~I~iwd 505 (723)
.....|.+++|.+++ .|...+ .+|.|+-..
T Consensus 177 ~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 177 ARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp SSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred cccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 223678899999988 666655 778887554
No 318
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.43 E-value=0.48 Score=48.97 Aligned_cols=105 Identities=12% Similarity=0.126 Sum_probs=62.4
Q ss_pred CCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCcEE--EEEc---CcCCcEEEEEEcCC---CCEEEEEeC-C-----CcE
Q 004924 478 PPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTK--AKLK---GHQNRITCLAYSLS---LNVLVSSGA-D-----AQL 543 (723)
Q Consensus 478 ~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~~~--~~l~---~~~~~i~~l~~spd---g~~l~s~s~-d-----g~I 543 (723)
-.....++|.|+|.++++..+|.|++++ +++.. ..+. ........++++|+ +..|.++.. . +.|
T Consensus 30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 3456799999999445556779999998 44322 1111 12356889999998 555554443 2 578
Q ss_pred EEEeCCCCceeeceee-eeee--cCCCCCCCCeEEEEEccCCCEEEE
Q 004924 544 CVWDAVGWKKLCSKFL-HSFQ--TGLVPETTIVNHIQFHPDQIHLLS 587 (723)
Q Consensus 544 ~vwd~~~~~~~~~~~l-~~~~--~~~~~~~~~v~~l~~spdg~~l~~ 587 (723)
..|+...+.......+ ..++ .+.. .....++|.|||...++
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~---h~~~~l~~~pdG~Lyv~ 151 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGL---HSGGRIAFGPDGMLYVT 151 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCC---CCCCCEEECTTSCEEEE
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCC---cCCceEEECCCCCEEEE
Confidence 8888775422111222 1132 1111 23468999999976665
No 319
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.42 E-value=1.1 Score=46.29 Aligned_cols=226 Identities=10% Similarity=0.052 Sum_probs=114.8
Q ss_pred CeEEEEEe--CCEEEEEeCCcEEEEEcCCCcE--EEEEe---CCCCCeEEEEEcCC----CeEEEEEC-C-----CcEEE
Q 004924 441 SISCFALR--GSHLFSASGGKISIFSLETFQT--LATFA---NPPPIATYFILLPQ----DLFAFGFD-D-----SSILV 503 (723)
Q Consensus 441 ~V~~v~~s--~~~l~s~sdg~I~vwd~~~~~~--~~~~~---~~~~~v~~l~~~p~----~~l~sgs~-d-----g~I~i 503 (723)
....++|. |.++++-.+|.|.+++ +++. +..+. ........++++|+ +.|+++.. . +.|..
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 45689998 5544443389999998 4432 22221 22456789999998 44443332 2 57888
Q ss_pred EeCCCCcE-----E-EEEc---CcCCcEEEEEEcCCCCEEEEEeC-------------CCcEEEEeCCCCceeece----
Q 004924 504 HCPCTKKT-----K-AKLK---GHQNRITCLAYSLSLNVLVSSGA-------------DAQLCVWDAVGWKKLCSK---- 557 (723)
Q Consensus 504 wd~~~~~~-----~-~~l~---~~~~~i~~l~~spdg~~l~s~s~-------------dg~I~vwd~~~~~~~~~~---- 557 (723)
|+...+.. + ..+. +.......++|.|||...++.+. .|.|.-++... ......
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~~ 188 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFLG 188 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTTT
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCcccC
Confidence 88764421 1 2233 11123468999999976665432 14555555543 100000
Q ss_pred ----eeeeeecCCCCCCCCeEEEEEcc-CCCEEEE-E-cCC-------cEEEEECCCCc------------------eeE
Q 004924 558 ----FLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-I-HEG-------QIDVYEAPTLN------------------HTS 605 (723)
Q Consensus 558 ----~l~~~~~~~~~~~~~v~~l~~sp-dg~~l~~-s-~dg-------~I~vwd~~~~~------------------~~~ 605 (723)
....+..++ .....++|+| +|..+++ . .+. .|.+.. .+. ++.
T Consensus 189 ~~~~~~~i~a~G~----rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 189 RRGARPEVYSLGH----RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp CTTSCTTEEEECC----SEECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CCCCCccEEEEcC----CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcCCCCcccCCCCCCCCcCCeE
Confidence 001112222 2456789999 6666665 2 222 233322 221 111
Q ss_pred EecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEE-EeecccccCCCCccCccceEEEEEecCCCCEEEEE
Q 004924 606 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC-QINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 684 (723)
Q Consensus 606 ~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~-~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 684 (723)
.+ .+......++| .+|.++++....+.|...++....... ......+.. . . -.+.++++.| ||.+.++.
T Consensus 263 ~~---~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~-~--~--~rp~~v~~~p-dG~lyv~~ 332 (352)
T 2ism_A 263 FW---PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS-G--F--GRLREVQVGP-DGALYVTT 332 (352)
T ss_dssp EC---TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE-S--S--CCEEEEEECT-TSCEEEEE
T ss_pred ec---CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc-c--C--CCeeEEEECC-CCcEEEEE
Confidence 22 11234567777 567766666666777777765432100 000000110 0 1 1255899999 77766654
Q ss_pred E
Q 004924 685 L 685 (723)
Q Consensus 685 s 685 (723)
.
T Consensus 333 ~ 333 (352)
T 2ism_A 333 S 333 (352)
T ss_dssp C
T ss_pred e
Confidence 3
No 320
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.39 E-value=0.4 Score=48.06 Aligned_cols=183 Identities=9% Similarity=0.025 Sum_probs=94.2
Q ss_pred CCEEEEEe-C-----CcEEEEEcCCCc---EEEE--EeCCCCCeEEEEEcCCC-eEEEEECC-----CcEEEEeCCCCcE
Q 004924 449 GSHLFSAS-G-----GKISIFSLETFQ---TLAT--FANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKT 511 (723)
Q Consensus 449 ~~~l~s~s-d-----g~I~vwd~~~~~---~~~~--~~~~~~~v~~l~~~p~~-~l~sgs~d-----g~I~iwd~~~~~~ 511 (723)
+..++.|+ + ..+.+||+.+++ .... +........++.+ ++ .++.|+.+ ..+.+||+.+.+-
T Consensus 63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W 140 (301)
T 2vpj_A 63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW 140 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence 55666666 4 368999998766 3332 2111112222222 56 66666644 3688999887654
Q ss_pred EEE--EcCcCCcEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCE
Q 004924 512 KAK--LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 584 (723)
Q Consensus 512 ~~~--l~~~~~~i~~l~~spdg~~l~s~s~d-----g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~ 584 (723)
... +......-..+.+ +++.++.|+.+ ..+.+||..+.+- ..+..++... .....+.+ +++.
T Consensus 141 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W---~~~~~~p~~r----~~~~~~~~--~~~i 209 (301)
T 2vpj_A 141 SMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHW---TNVTPMATKR----SGAGVALL--NDHI 209 (301)
T ss_dssp EEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE---EEECCCSSCC----BSCEEEEE--TTEE
T ss_pred EECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcE---EeCCCCCccc----ccceEEEE--CCEE
Confidence 322 2111111122222 66777777654 4588999887532 2222122221 11122222 4555
Q ss_pred EEE-EcC-----CcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC-----CcEEEEECCCCc
Q 004924 585 LLS-IHE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLE 646 (723)
Q Consensus 585 l~~-s~d-----g~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d-----g~I~iwd~~~~~ 646 (723)
++. |.+ ..+.+||+.+.+-...-.......... +..-+++.++.|+.+ ..+.+||..+.+
T Consensus 210 ~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 210 YVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVG--ATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE--EEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccccee--EEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 555 332 479999998776433211111111112 222377777777765 457888887765
No 321
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.33 E-value=0.33 Score=48.66 Aligned_cols=220 Identities=11% Similarity=0.029 Sum_probs=111.2
Q ss_pred CcEEEEEcCCCcEEEEE--eCCCCCeEEEEEcCCC-eEEEEECC-----CcEEEEeCCCCc---EEEE--EcCcCCcEEE
Q 004924 458 GKISIFSLETFQTLATF--ANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKK---TKAK--LKGHQNRITC 524 (723)
Q Consensus 458 g~I~vwd~~~~~~~~~~--~~~~~~v~~l~~~p~~-~l~sgs~d-----g~I~iwd~~~~~---~~~~--l~~~~~~i~~ 524 (723)
..+.+||+.+++....- ........++. .++ .++.|+.+ ..+.+||+.+++ -... +.........
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 36788888776543221 11111112222 346 66677654 368999988766 3322 1111111122
Q ss_pred EEEcCCCCEEEEEeCC-----CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcC-----CcE
Q 004924 525 LAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-----GQI 593 (723)
Q Consensus 525 l~~spdg~~l~s~s~d-----g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~d-----g~I 593 (723)
+.+ +++.++.|+.+ ..+.+||..+.+- ..+..++.... .. +++.. +++.++. |.+ ..+
T Consensus 109 ~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W---~~~~~~p~~r~----~~-~~~~~-~~~iyv~GG~~~~~~~~~~ 177 (301)
T 2vpj_A 109 TTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW---SMLGDMQTARE----GA-GLVVA-SGVIYCLGGYDGLNILNSV 177 (301)
T ss_dssp EEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE---EEEEECSSCCB----SC-EEEEE-TTEEEEECCBCSSCBCCCE
T ss_pred EEE--CCEEEEEcccCCCcccceEEEEcCCCCeE---EECCCCCCCcc----cc-eEEEE-CCEEEEECCCCCCcccceE
Confidence 222 56677777654 3588899887532 22222222211 11 22222 5555555 332 468
Q ss_pred EEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC-----CcEEEEECCCCcEEEEeecccccCCCCccCccce
Q 004924 594 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYAQPGTISLELYP 668 (723)
Q Consensus 594 ~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~ 668 (723)
.+||+.+.+-...-......... + +...+++.++.|+.+ ..+.+||..+.+-...-. .+.. ....
T Consensus 178 ~~~d~~~~~W~~~~~~p~~r~~~-~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~----~p~~----r~~~ 247 (301)
T 2vpj_A 178 EKYDPHTGHWTNVTPMATKRSGA-G-VALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS----MTTP----RCYV 247 (301)
T ss_dssp EEEETTTTEEEEECCCSSCCBSC-E-EEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC----CSSC----CBSC
T ss_pred EEEeCCCCcEEeCCCCCcccccc-e-EEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC----CCCc----ccce
Confidence 99999877643321111111111 2 222367777777764 468999998876433211 1111 1111
Q ss_pred EEEEEecCCCCEEEEEECC-----CcEEEEecCCCceeeecC
Q 004924 669 LVIAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWGKL 705 (723)
Q Consensus 669 ~~v~~sp~d~~~las~s~D-----g~v~iWd~~~~~~~w~~~ 705 (723)
.++.+ ++.+++.|+.+ ..|.+||+.+. .|...
T Consensus 248 ~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~ 284 (301)
T 2vpj_A 248 GATVL---RGRLYAIAGYDGNSLLSSIECYDPIID--SWEVV 284 (301)
T ss_dssp EEEEE---TTEEEEECCBCSSSBEEEEEEEETTTT--EEEEE
T ss_pred eEEEE---CCEEEEEcCcCCCcccccEEEEcCCCC--eEEEc
Confidence 12222 46677777765 35778888765 47654
No 322
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.04 E-value=0.78 Score=45.89 Aligned_cols=183 Identities=11% Similarity=0.071 Sum_probs=93.0
Q ss_pred CCEEEEEe-C-----CcEEEEEcCCCcEEEEEe--CCCCCeEEEEEcCCC-eEEEEECCC-----cEEEEeCCCCcEEEE
Q 004924 449 GSHLFSAS-G-----GKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKAK 514 (723)
Q Consensus 449 ~~~l~s~s-d-----g~I~vwd~~~~~~~~~~~--~~~~~v~~l~~~p~~-~l~sgs~dg-----~I~iwd~~~~~~~~~ 514 (723)
+..++.|+ + ..+.+||..+.+....-. .......++. -++ .++.|+.++ .+.+||+.+.+-...
T Consensus 62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 139 (302)
T 2xn4_A 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV 139 (302)
T ss_dssp TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence 55566665 4 358899988765433222 1111122222 256 666676553 578899887654332
Q ss_pred --EcCcCCcEEEEEEcCCCCEEEEEeCC-------CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEE
Q 004924 515 --LKGHQNRITCLAYSLSLNVLVSSGAD-------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 585 (723)
Q Consensus 515 --l~~~~~~i~~l~~spdg~~l~s~s~d-------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l 585 (723)
+.........+.+ +++.++.|+.+ ..+.+||..+..- ..+..++.... .. +++.. +++.+
T Consensus 140 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W---~~~~~~p~~r~----~~-~~~~~-~~~iy 208 (302)
T 2xn4_A 140 APMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEW---TYIAEMSTRRS----GA-GVGVL-NNLLY 208 (302)
T ss_dssp CCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEE---EEECCCSSCCB----SC-EEEEE-TTEEE
T ss_pred CCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcE---EECCCCccccc----cc-cEEEE-CCEEE
Confidence 1111111122222 56666666542 3588899887532 22222222211 11 22222 45555
Q ss_pred EE-EcC-----CcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCC-----cEEEEECCCCc
Q 004924 586 LS-IHE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-----HVKVFDTSTLE 646 (723)
Q Consensus 586 ~~-s~d-----g~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg-----~I~iwd~~~~~ 646 (723)
+. |.+ ..+.+||+.+.+-... ........-.+ +...+++.++.|+.++ .+.+||..+.+
T Consensus 209 v~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~~~~r~~~~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 209 AVGGHDGPLVRKSVEVYDPTTNAWRQV-ADMNMCRRNAG-VCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EECCBSSSSBCCCEEEEETTTTEEEEE-CCCSSCCBSCE-EEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EECCCCCCcccceEEEEeCCCCCEeeC-CCCCCccccCe-EEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 55 433 4799999987654322 11111111111 2224777777777653 48899998775
No 323
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.00 E-value=1.7 Score=44.73 Aligned_cols=237 Identities=10% Similarity=0.023 Sum_probs=120.8
Q ss_pred CeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcEEEEE-------eCCCCCeEEEEEcCC----CeEEEE-EC-------C
Q 004924 441 SISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF-------ANPPPIATYFILLPQ----DLFAFG-FD-------D 498 (723)
Q Consensus 441 ~V~~v~~s--~~~l~s~s-dg~I~vwd~~~~~~~~~~-------~~~~~~v~~l~~~p~----~~l~sg-s~-------d 498 (723)
....++|. |+.++++. .|.|++++.. +.....+ .........++++|+ +.|+++ +. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 45788898 66244555 8999999853 3321111 122345689999995 443333 22 2
Q ss_pred CcEEEEeCCCC--c--EEE-EEcC------cCCcEEEEEEcCCCCEEEEEeCC-------------CcEEEEeCCCCcee
Q 004924 499 SSILVHCPCTK--K--TKA-KLKG------HQNRITCLAYSLSLNVLVSSGAD-------------AQLCVWDAVGWKKL 554 (723)
Q Consensus 499 g~I~iwd~~~~--~--~~~-~l~~------~~~~i~~l~~spdg~~l~s~s~d-------------g~I~vwd~~~~~~~ 554 (723)
..|..|+...+ + ... .+.. ....-..++|.|||.+.++.+.. |.|.-+|.... ..
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~-~p 176 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE-IP 176 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC-CC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC-CC
Confidence 35666666533 1 111 1211 11223579999999655554332 45666665531 00
Q ss_pred ece--------eeeeeecCCCCCCCCeEEEEEcc-CCCEEEE--EcCCcEEEEECCCCce--------------------
Q 004924 555 CSK--------FLHSFQTGLVPETTIVNHIQFHP-DQIHLLS--IHEGQIDVYEAPTLNH-------------------- 603 (723)
Q Consensus 555 ~~~--------~l~~~~~~~~~~~~~v~~l~~sp-dg~~l~~--s~dg~I~vwd~~~~~~-------------------- 603 (723)
... ....+..++ .....++|+| +|..+++ +.++.=.|.-+..+..
T Consensus 177 ~~npf~~~~~~~~~i~a~G~----rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~ 252 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGI----RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEA 252 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECC----SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTC
T ss_pred CCCCCcCCCCCCccEEEEcC----cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcc
Confidence 000 011122233 3577899999 6666665 2322112222211110
Q ss_pred -----------eEEecCCCCCCCeEEEEEee-------CCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCc
Q 004924 604 -----------TSQLVPDKMDLPITYATYSC-------DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLE 665 (723)
Q Consensus 604 -----------~~~~~~~~h~~~v~~l~~sp-------dg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~ 665 (723)
+..+ .+......++|.. +|.++++....+.|...++..++....... .. ...
T Consensus 253 ~~~~~~~~~~P~~~~---~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~---~~----~~~ 322 (353)
T 2g8s_A 253 KGEIVAGTEQPVFYW---KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRI---LT----DRG 322 (353)
T ss_dssp CBSSCTTSCCCSEEE---SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE---SG----GGC
T ss_pred cCCCCCCccCCeEEe---CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEc---cc----CCC
Confidence 1111 1133566777763 467777777778888888776644332111 10 111
Q ss_pred cceEEEEEecCCCCEEEEEECCCcEEEEec
Q 004924 666 LYPLVIAAHPLEPNRIALGLTNGRVHVIEP 695 (723)
Q Consensus 666 v~~~~v~~sp~d~~~las~s~Dg~v~iWd~ 695 (723)
-.+..+++.| ||.+.++.. +..=+||.+
T Consensus 323 ~rp~~v~~~p-dG~lyv~td-~~~g~I~ri 350 (353)
T 2g8s_A 323 QRIRDVRTGP-DGYLYVLTD-ESSGELLKV 350 (353)
T ss_dssp CCEEEEEECT-TSCEEEEEC-STTEEEEEE
T ss_pred CceeEEEECC-CCcEEEEEe-CCCCEEEEE
Confidence 2355899999 887655432 222345544
No 324
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.95 E-value=1.3 Score=44.72 Aligned_cols=227 Identities=11% Similarity=0.081 Sum_probs=112.2
Q ss_pred EEEeCCcEEEEEcCCCcEEE-EEeCCCCCeEEEEEcCCC-eEEEEEC-----C------CcEEEEeCCCCcEEEEEcCcC
Q 004924 453 FSASGGKISIFSLETFQTLA-TFANPPPIATYFILLPQD-LFAFGFD-----D------SSILVHCPCTKKTKAKLKGHQ 519 (723)
Q Consensus 453 ~s~sdg~I~vwd~~~~~~~~-~~~~~~~~v~~l~~~p~~-~l~sgs~-----d------g~I~iwd~~~~~~~~~l~~~~ 519 (723)
+.-+...+.+||..+++... .+..+.......+...++ .++.|+. . ..+..||..+++-. .+....
T Consensus 8 ~~~GG~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~~~~p 86 (315)
T 4asc_A 8 FMISEEGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL-GMPPLP 86 (315)
T ss_dssp EEEETTEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE-ECCCBS
T ss_pred EEEcCCceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE-ECCCCC
Confidence 33334678999998877543 111222233333334466 6666663 1 12788898876542 222111
Q ss_pred CcE--EEEEEcCCCCEEEEEeCC--------CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-E
Q 004924 520 NRI--TCLAYSLSLNVLVSSGAD--------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I 588 (723)
Q Consensus 520 ~~i--~~l~~spdg~~l~s~s~d--------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s 588 (723)
.+- .+++.. ++..++.|+.+ ..+.+||..+.+- ..+..++.... . .+++. -+++.++. |
T Consensus 87 ~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W---~~~~~~p~~r~----~-~~~~~-~~~~iyv~GG 156 (315)
T 4asc_A 87 SPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKW---GESDPLPYVVY----G-HTVLS-HMDLVYVIGG 156 (315)
T ss_dssp SCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEE---EECCCCSSCCB----S-CEEEE-ETTEEEEECC
T ss_pred cchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcE---eECCCCCCccc----c-eeEEE-ECCEEEEEeC
Confidence 111 111122 56666666632 3588899987532 22222222211 1 12222 34455554 3
Q ss_pred c-C-----CcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCC-----cEEEEECCCCcEEEEeeccccc
Q 004924 589 H-E-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-----HVKVFDTSTLELRCQINLTAYA 657 (723)
Q Consensus 589 ~-d-----g~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg-----~I~iwd~~~~~~~~~~~~~~~~ 657 (723)
. + ..+.+||..+.+-.. +........-.+ +..-+++.++.|+.++ .+.+||..+.+-...-. .
T Consensus 157 ~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~ 230 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKFEWKE-LAPMQTARSLFG-ATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----F 230 (315)
T ss_dssp BCTTSCBCCCEEEEETTTTEEEE-CCCCSSCCBSCE-EEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----C
T ss_pred CCCCCcccceEEEEeCCCCeEEE-CCCCCCchhceE-EEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----C
Confidence 3 2 368999998765432 211111111112 2223777777777654 58889998875433211 1
Q ss_pred CCCCccCccceEEEEEecCCCCEEEEEECCC--------------cEEEEecCCCceeeecC
Q 004924 658 QPGTISLELYPLVIAAHPLEPNRIALGLTNG--------------RVHVIEPLESEVEWGKL 705 (723)
Q Consensus 658 ~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg--------------~v~iWd~~~~~~~w~~~ 705 (723)
+..... . +++.. ++.+++.||.++ .+.+||+.+. .|...
T Consensus 231 p~~r~~----~-~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~ 283 (315)
T 4asc_A 231 PQERSS----L-SLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK--KWEGV 283 (315)
T ss_dssp SSCCBS----C-EEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT--EEEEE
T ss_pred CCcccc----e-eEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCC--hhhhh
Confidence 111111 1 22222 457777777642 3667777665 57764
No 325
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.85 E-value=0.76 Score=47.34 Aligned_cols=181 Identities=12% Similarity=0.071 Sum_probs=104.9
Q ss_pred CCcEEEEEcCC--CcEE-EEEeC-----CCCCeEEEEEcC--CC--eEEEEEC---CCcEEEEeCCCC-c---EEEEEcC
Q 004924 457 GGKISIFSLET--FQTL-ATFAN-----PPPIATYFILLP--QD--LFAFGFD---DSSILVHCPCTK-K---TKAKLKG 517 (723)
Q Consensus 457 dg~I~vwd~~~--~~~~-~~~~~-----~~~~v~~l~~~p--~~--~l~sgs~---dg~I~iwd~~~~-~---~~~~l~~ 517 (723)
+|.|.++|.++ ++.. -.+.+ ..-....+.+.+ ++ +|+++.. +.+|.+|++..+ . .+..+.+
T Consensus 82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g 161 (355)
T 3sre_A 82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH 161 (355)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecccc
Confidence 78999999873 2221 12222 123556777655 34 5555533 457778776543 2 2234443
Q ss_pred c-CCcEEEEEEcCCCCEEEEEeC-----------------CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEc
Q 004924 518 H-QNRITCLAYSLSLNVLVSSGA-----------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 579 (723)
Q Consensus 518 ~-~~~i~~l~~spdg~~l~s~s~-----------------dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~s 579 (723)
. -...+++.+.++|.+.++... .|.|.-+|. ++ +..+..+- ...+.++|+
T Consensus 162 ~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~------~~~~~~~l----~~pNGia~s 229 (355)
T 3sre_A 162 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND------VRVVAEGF----DFANGINIS 229 (355)
T ss_dssp TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC------CEEEEEEE----SSEEEEEEC
T ss_pred CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce------EEEeecCC----cccCcceEC
Confidence 2 246889999999987776541 234444443 21 11111221 457899999
Q ss_pred cCCCEEEEE--cCCcEEEEECCC-Cce--eEEecCCCCCCCeEEEEEee-CCcEEEEEeCC-CcEEEEECC--CCcEEEE
Q 004924 580 PDQIHLLSI--HEGQIDVYEAPT-LNH--TSQLVPDKMDLPITYATYSC-DGKCIYVSCKS-GHVKVFDTS--TLELRCQ 650 (723)
Q Consensus 580 pdg~~l~~s--~dg~I~vwd~~~-~~~--~~~~~~~~h~~~v~~l~~sp-dg~~l~sgs~d-g~I~iwd~~--~~~~~~~ 650 (723)
||++.++++ ..+.|+.|++.. ++. ...+. .....-.+++.+ +|++.+++..+ +.|..|+.. .+..+.+
T Consensus 230 pDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~r 306 (355)
T 3sre_A 230 PDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLR 306 (355)
T ss_dssp TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEE
T ss_pred CCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEE
Confidence 999988874 678999999863 332 12332 145677889998 59877766544 345445543 2444444
Q ss_pred ee
Q 004924 651 IN 652 (723)
Q Consensus 651 ~~ 652 (723)
+.
T Consensus 307 I~ 308 (355)
T 3sre_A 307 IQ 308 (355)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 326
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.83 E-value=0.46 Score=57.11 Aligned_cols=239 Identities=10% Similarity=0.046 Sum_probs=130.7
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEeC
Q 004924 379 RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASG 457 (723)
Q Consensus 379 ~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~sd 457 (723)
+.-.+|..+.+|.= ...++.|+|+.+... ..++ ....+|..=.|- .+.|+-.++
T Consensus 70 sAIMnP~~~iiALr-ag~~lQiFnl~~k~k-----lks~-------------------~~~e~VvfWkWis~~~l~lVT~ 124 (1630)
T 1xi4_A 70 SAIMNPASKVIALK-AGKTLQIFNIEMKSK-----MKAH-------------------TMTDDVTFWKWISLNTVALVTD 124 (1630)
T ss_pred hhccCCCcceEEEe-cCCeEEEeehHHhhh-----hccc-------------------ccCCCceEEEecCCCeeEEEcC
Confidence 34566777755544 367899999875332 0000 123456555666 888888889
Q ss_pred CcEEEEEcCC-CcEEEEEeCC----CCCeEEEEEcCCC-eEE-EEE------CCCcEEEEeCCCCcEEEEEcCcCCcEEE
Q 004924 458 GKISIFSLET-FQTLATFANP----PPIATYFILLPQD-LFA-FGF------DDSSILVHCPCTKKTKAKLKGHQNRITC 524 (723)
Q Consensus 458 g~I~vwd~~~-~~~~~~~~~~----~~~v~~l~~~p~~-~l~-sgs------~dg~I~iwd~~~~~~~~~l~~~~~~i~~ 524 (723)
..|..|++.. ..+.+.+..| +..|..-..+++. +++ +|- -.|.+.+|..+.+ ..+.+.||.+....
T Consensus 125 ~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~ 203 (1630)
T 1xi4_A 125 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQ 203 (1630)
T ss_pred CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhhe
Confidence 9999999964 2344444433 3456667778888 444 332 3578889987643 44556677655444
Q ss_pred EEEc--CCC-CEEEEEeC---CCcEEEEeCCCC----ceeeceeeee-eecCCCCCCCCeEEEEEccCCCEEEE-EcCCc
Q 004924 525 LAYS--LSL-NVLVSSGA---DAQLCVWDAVGW----KKLCSKFLHS-FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ 592 (723)
Q Consensus 525 l~~s--pdg-~~l~s~s~---dg~I~vwd~~~~----~~~~~~~l~~-~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~ 592 (723)
+... +.. ..++.+.. .+.++|.++... .....+...- ++.... ..-..++..|+.-..+.. +.-|.
T Consensus 204 ~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~--~Dfpv~~~vs~k~g~iy~itk~G~ 281 (1630)
T 1xi4_A 204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ--NDFPVAMQISEKHDVVFLITKYGY 281 (1630)
T ss_pred eccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccc--cCcceEEEeccccCEEEEEecCce
Confidence 4332 111 22222222 268888888542 1111111110 111100 033446677776555655 78899
Q ss_pred EEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcE
Q 004924 593 IDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL 647 (723)
Q Consensus 593 I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~ 647 (723)
|++||+.+|.++..-+.. ..+|...+-+....-+++....|.|.--.+....+
T Consensus 282 ~~~~d~~t~~~i~~~ris--~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 282 IHLYDLETGTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred EEEEecccchhhhhcccc--CCceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence 999999999987654322 33343333333222233333556555554444433
No 327
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.72 E-value=4 Score=46.78 Aligned_cols=320 Identities=15% Similarity=0.085 Sum_probs=166.2
Q ss_pred CCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCC--CCCCceEEEEEeCCCCEEEEEECCCcEEEEeccCCccccccc
Q 004924 336 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDN--SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEE 413 (723)
Q Consensus 336 dg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~--~h~~~V~~l~fspdg~~las~s~dg~i~iWd~~~~~~~~g~~ 413 (723)
+|...+ ++. +.+..++.. ...+..+.++.. .....|.++...+++..|..|+. +-+..++..+...
T Consensus 156 ~g~lWi-gt~-~Gl~~~~~~----~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~----- 223 (758)
T 3ott_A 156 DNQIYV-GTY-NGLCRYIPS----NGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQI----- 223 (758)
T ss_dssp TCCEEE-EET-TEEEEEETT----TTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEE-----
T ss_pred CCCEEE-EeC-CCHhhCccC----CCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeE-----
Confidence 444433 443 346666654 233443333320 01235888888887765455553 3466666442211
Q ss_pred ceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEEeCCcEEEEEcCCCcEEEEEeC-------CCCCeEEEE
Q 004924 414 NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETFQTLATFAN-------PPPIATYFI 485 (723)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~sdg~I~vwd~~~~~~~~~~~~-------~~~~v~~l~ 485 (723)
..... -....|.++... ...|..|+++-+.+++..+++....... ....|.++.
T Consensus 224 ----------------~~~~~--l~~~~i~~i~~d~~g~lWigT~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~ 285 (758)
T 3ott_A 224 ----------------KQTEA--FHNNSIKSLALDGNGDLLAGTDNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIF 285 (758)
T ss_dssp ----------------EEEEE--EEEEEEEEEEECTTCCEEEEETTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEE
T ss_pred ----------------EeccC--CCCCeEEEEEEcCCCCEEEEeCCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEE
Confidence 00000 012346677766 4455555655688888876544322111 234588888
Q ss_pred EcCCCeEEEEECCCcEEEEeCCCCcEEEEEc-------CcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeecee
Q 004924 486 LLPQDLFAFGFDDSSILVHCPCTKKTKAKLK-------GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 558 (723)
Q Consensus 486 ~~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~-------~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~ 558 (723)
...+|.|..|+..| +.++... .. ...+. .....|.++.-..+|..-+ |+.+ -+..++..++.......
T Consensus 286 ~D~~g~lWiGT~~G-l~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~-Gl~~~~~~~~~~~~~~~ 360 (758)
T 3ott_A 286 ADQEHNIWLGTDYG-ISLSRYN-SA-LQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGAN-GLIRFTDPAGERHDAIW 360 (758)
T ss_dssp ECTTCCEEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETT-EEEEESCTTSSCCCCEE
T ss_pred EcCCCCEEEEeCCc-ccccccC-Cc-eeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCC-cceeecccccccceeEE
Confidence 87777566666666 5544332 21 11111 1234688888888886544 4554 46667665432111001
Q ss_pred eeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCCC----CCCCeEEEEEeeCCcEEEEEeCC
Q 004924 559 LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDK----MDLPITYATYSCDGKCIYVSCKS 634 (723)
Q Consensus 559 l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~----h~~~v~~l~~spdg~~l~sgs~d 634 (723)
...-.....-....|.++.-.++|...+++ ++.+..||..+++...-..... ....|.++...++|. |..|+..
T Consensus 361 ~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~ 438 (758)
T 3ott_A 361 YRMGDKTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCL 438 (758)
T ss_dssp ECTTCSSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSE-EEEEESS
T ss_pred eccCCcCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECC
Confidence 110000000001468899888888776655 5689999998776432211111 134578887777766 4456666
Q ss_pred CcEEEEECCCC-----cEE---EEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCCCc
Q 004924 635 GHVKVFDTSTL-----ELR---CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 699 (723)
Q Consensus 635 g~I~iwd~~~~-----~~~---~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~~~ 699 (723)
+-|..+|..+. ... ..+... .|-.... +.++...+ ++.+.+.++..+.|..+|..+++
T Consensus 439 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~--i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~ 504 (758)
T 3ott_A 439 GGIFVVDKHKLMQSTSGQYIAEQNYSVH----NGLSGMF--INQIIPDN-EGNVWVLLYNNKGIDKINPRTRE 504 (758)
T ss_dssp SCEEEEEHHHHHHCCSSEEECSEEECGG----GTCSCSC--EEEEEECT-TSCEEEEETTCSSEEEEETTTTE
T ss_pred CceEEEccccccccCCcceecccccccc----cccccce--eeeEEEcC-CCCEEEEccCCCCcEEEeCCCCc
Confidence 66888886531 111 111111 1111222 34777777 67776644445568888887654
No 328
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.33 Score=49.66 Aligned_cols=196 Identities=8% Similarity=0.007 Sum_probs=99.8
Q ss_pred EEEEEECCCcEEEEeccCCcccccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEe-CCEEEEE-e-CCcEEEEE
Q 004924 388 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSA-S-GGKISIFS 464 (723)
Q Consensus 388 ~las~s~dg~i~iWd~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~l~s~-s-dg~I~vwd 464 (723)
.++.++.||.|.-.|..+++. .|..+.+.........+.... . +..++.. . ||.+..++
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~------------~W~~~~~~~~p~~~~~~~~~~------~~~~~~vv~p~~dG~l~a~~ 73 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHI------------IWSIEPENFQPLIEIQEPSRL------ETYETLIIEPFGDGNIYYFN 73 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEE------------EEEECGGGSCCSEECCCSCTT------TSSEEEEECCSTTTEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcE------------EEEecCCccCCcEEecCCccc------cCCcEEEEEECCCCEEEEEE
Confidence 577888888888888764432 355443300000000001000 1 2333333 4 89999999
Q ss_pred cCCCcEEEEEeC----CCCCeEE---EEE------cCCCeEEEEECCCcEEEEeCCCCcEEEEEcCcC--Cc-----EEE
Q 004924 465 LETFQTLATFAN----PPPIATY---FIL------LPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ--NR-----ITC 524 (723)
Q Consensus 465 ~~~~~~~~~~~~----~~~~v~~---l~~------~p~~~l~sgs~dg~I~iwd~~~~~~~~~l~~~~--~~-----i~~ 524 (723)
..+|.....+.. ...++.. ... +.++.+++|+.+|.+.-.|+.+|+.+..+.... +. ..|
T Consensus 74 ~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~ 153 (339)
T 2be1_A 74 AHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDC 153 (339)
T ss_dssp TTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC---------
T ss_pred CCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccc
Confidence 988865544431 1112211 000 122388999999999999999999999886421 11 111
Q ss_pred EEEc-----CCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCe-EEEEEccCCCEEEEEcCCcEEEEEC
Q 004924 525 LAYS-----LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV-NHIQFHPDQIHLLSIHEGQIDVYEA 598 (723)
Q Consensus 525 l~~s-----pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v-~~l~~spdg~~l~~s~dg~I~vwd~ 598 (723)
.... ..+..++.+..+..+.+.+ ++|+ .......... .... ...+ .+-..+.|+.+++++.||.|.-+|.
T Consensus 154 ~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~-~~~~-~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~ 229 (339)
T 2be1_A 154 SPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQ-QNVL-DVPLALQNTFSKDGMCIAPFRDKSLLASDL 229 (339)
T ss_dssp -----------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEE-CCTT-THHHHTTCSSCSSSCCEEEETTTEEEEECS
T ss_pred ccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEeccccc-cccc-ccccccccccccCCcEEEECCCCEEEEEEC
Confidence 1111 1235677777777777766 4443 2211111110 0000 0000 0001123566666678888888888
Q ss_pred CCCceeE
Q 004924 599 PTLNHTS 605 (723)
Q Consensus 599 ~~~~~~~ 605 (723)
.+|+.+-
T Consensus 230 ~~G~~~W 236 (339)
T 2be1_A 230 DFRIARW 236 (339)
T ss_dssp TTCCEEE
T ss_pred CCCcEEE
Confidence 8777654
No 329
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.56 E-value=0.62 Score=47.81 Aligned_cols=114 Identities=14% Similarity=-0.052 Sum_probs=65.9
Q ss_pred EcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccC---CCEEEE--E-
Q 004924 515 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---QIHLLS--I- 588 (723)
Q Consensus 515 l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spd---g~~l~~--s- 588 (723)
+...-.....++|.|||..+++--..|.|++++..++.......+..+..... .....++++|+ +.+|++ +
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~---~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGE---GGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTT---BSEEEEEECTTHHHHCEEEEEEEC
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCC---CCceeeEeccccccCCEEEEEEec
Confidence 33334467899999999877766558999999876553211111110111111 56889999996 344544 3
Q ss_pred -cCCcEEEEECCCC----------ceeE-EecCCCCCCCeEEEEEeeCCcEEEEEe
Q 004924 589 -HEGQIDVYEAPTL----------NHTS-QLVPDKMDLPITYATYSCDGKCIYVSC 632 (723)
Q Consensus 589 -~dg~I~vwd~~~~----------~~~~-~~~~~~h~~~v~~l~~spdg~~l~sgs 632 (723)
.++.|.-|....+ +.+. .+.. .....-..++|.|||.+.++.+
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK-GVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC-CSSCCCCCEEECTTSCEEEECB
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCC-CCCccCccccCCCCCCEEEEEC
Confidence 4456777766542 1111 1221 1123445799999998766654
No 330
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.54 E-value=0.66 Score=47.96 Aligned_cols=106 Identities=12% Similarity=0.040 Sum_probs=62.8
Q ss_pred CCCeEEEEEcCCCeEEEEECCCcEEEEeCCCCc-EEEEEc---CcCCcEEEEEEcCC---CCEEEEEeC----C----Cc
Q 004924 478 PPIATYFILLPQDLFAFGFDDSSILVHCPCTKK-TKAKLK---GHQNRITCLAYSLS---LNVLVSSGA----D----AQ 542 (723)
Q Consensus 478 ~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~~~-~~~~l~---~~~~~i~~l~~spd---g~~l~s~s~----d----g~ 542 (723)
-.....++|.|+|.++++..+|.|++++ .+++ .+..+. ........++++|+ +..|.++.. + ..
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 3456799999999555566779999997 4454 222211 12356889999997 445544433 3 56
Q ss_pred EEEEeCCCC--ceeeceee-eeeecCCCCCCCCeEEEEEccCCCEEEE
Q 004924 543 LCVWDAVGW--KKLCSKFL-HSFQTGLVPETTIVNHIQFHPDQIHLLS 587 (723)
Q Consensus 543 I~vwd~~~~--~~~~~~~l-~~~~~~~~~~~~~v~~l~~spdg~~l~~ 587 (723)
|..|+...+ .......+ ..++.... .....++|.|||.+.++
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~---h~~~~l~~~pDG~Lyvt 151 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYI---HNGGRIRFGPDGMLYIT 151 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSS---CCCCCEEECTTSCEEEE
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCC---cCCceEEECCCCcEEEE
Confidence 777877653 11111111 11222111 23467999999986666
No 331
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.49 E-value=0.73 Score=46.35 Aligned_cols=229 Identities=11% Similarity=0.041 Sum_probs=114.0
Q ss_pred CCEEEEEe-C----CcEEEEEcCCCcEEEEEe--CCCCCeEEEEEcCCC-eEEEEEC----C-----CcEEEEeCCCCcE
Q 004924 449 GSHLFSAS-G----GKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFD----D-----SSILVHCPCTKKT 511 (723)
Q Consensus 449 ~~~l~s~s-d----g~I~vwd~~~~~~~~~~~--~~~~~v~~l~~~p~~-~l~sgs~----d-----g~I~iwd~~~~~~ 511 (723)
+..++.|+ + ..+.+||..+++....-. ...... +++.. ++ .++.|+. + ..+.+||+.+.+-
T Consensus 25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 44555555 2 478899988766433211 111111 22222 55 6666654 2 4688999887653
Q ss_pred EEE--EcCcCCcEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCE
Q 004924 512 KAK--LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 584 (723)
Q Consensus 512 ~~~--l~~~~~~i~~l~~spdg~~l~s~s~d-----g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~ 584 (723)
... +.........+.+ +++.++.|+.+ ..+.+||..+.+- ..+..++... .....+.+ +++.
T Consensus 103 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W---~~~~~~p~~r----~~~~~~~~--~~~i 171 (308)
T 1zgk_A 103 SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEW---HLVAPMLTRR----IGVGVAVL--NRLL 171 (308)
T ss_dssp EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEE---EECCCCSSCC----BSCEEEEE--TTEE
T ss_pred eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeE---eECCCCCccc----cceEEEEE--CCEE
Confidence 321 1111111122222 56677776643 3588899887532 1222122221 11122222 4555
Q ss_pred EEE-EcC-----CcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC-----CcEEEEECCCCcEEEEeec
Q 004924 585 LLS-IHE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINL 653 (723)
Q Consensus 585 l~~-s~d-----g~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~ 653 (723)
++. |.+ ..+.+||+.+.+-...-......... +++. -+++.++.|+.+ ..+.+||..+.+-...-.
T Consensus 172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~- 248 (308)
T 1zgk_A 172 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGA-GVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP- 248 (308)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC-
T ss_pred EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccc-eEEE-ECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCC-
Confidence 555 332 46899999876543221111111111 2222 367777777764 568999998875332211
Q ss_pred ccccCCCCccCccceEEEEEecCCCCEEEEEECC-----CcEEEEecCCCceeeecC
Q 004924 654 TAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWGKL 705 (723)
Q Consensus 654 ~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D-----g~v~iWd~~~~~~~w~~~ 705 (723)
.+... ... +++.. ++.+++.|+.+ ..+.+||+.+. .|...
T Consensus 249 ---~p~~r----~~~-~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~ 293 (308)
T 1zgk_A 249 ---MKHRR----SAL-GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD--TWSEV 293 (308)
T ss_dssp ---CSSCC----BSC-EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT--EEEEE
T ss_pred ---CCCCc----cce-EEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC--EEeec
Confidence 11110 111 22222 46777777754 45778888765 47654
No 332
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.15 E-value=1.6 Score=52.64 Aligned_cols=190 Identities=12% Similarity=0.132 Sum_probs=114.5
Q ss_pred CCEEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCC-CcEEEEEcCc----CCcEE
Q 004924 449 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KKTKAKLKGH----QNRIT 523 (723)
Q Consensus 449 ~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~-~~~~~~l~~~----~~~i~ 523 (723)
.+.+|.-...++.|+|+++...++.+.-.. .|.-=.|-.+..|+..+ +..|+.|++.. ..+.+.|..| ...|.
T Consensus 77 ~~iiALrag~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIi 154 (1630)
T 1xi4_A 77 SKVIALKAGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQII 154 (1630)
T ss_pred cceEEEecCCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeE
Confidence 334444447899999999888777765544 34444565444333222 45799999964 3455555544 45677
Q ss_pred EEEEcCCCCEEEEEe-------CCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEc--cC-CCEEEEE----c
Q 004924 524 CLAYSLSLNVLVSSG-------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH--PD-QIHLLSI----H 589 (723)
Q Consensus 524 ~l~~spdg~~l~s~s-------~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~s--pd-g~~l~~s----~ 589 (723)
.-..+++.++++..+ -.|.+.+|.+..+ +.....||. +.-..+... +. ...++.+ .
T Consensus 155 nY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-------~sQ~iegha---~~F~~~~~~~~~~~~~l~~f~~~~~~ 224 (1630)
T 1xi4_A 155 NYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHA---ASFAQFKMEGNAEESTLFCFAVRGQA 224 (1630)
T ss_pred EeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-------cchhhhHhH---hhhheeccCCCCCCceEEEEEEecCC
Confidence 777889999876543 3477888887753 222344553 222222221 11 2233322 2
Q ss_pred CCcEEEEECCCC---ce------eEE-ecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEE
Q 004924 590 EGQIDVYEAPTL---NH------TSQ-LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ 650 (723)
Q Consensus 590 dg~I~vwd~~~~---~~------~~~-~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~ 650 (723)
.+.++|.++... .. +.. +.+........++..|+.-..++.-+.-|.|++||+.||.++..
T Consensus 225 g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred CceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence 368889888542 11 111 11111244556788888888888888999999999999987654
No 333
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.13 E-value=3.1 Score=41.80 Aligned_cols=222 Identities=12% Similarity=0.075 Sum_probs=108.2
Q ss_pred CcEEEEEcCCCcEEEE-EeCCCCCeEEEEEcCCC-eEEEEEC----CC-------cEEEEeCCCCcEEEE--EcCcCCcE
Q 004924 458 GKISIFSLETFQTLAT-FANPPPIATYFILLPQD-LFAFGFD----DS-------SILVHCPCTKKTKAK--LKGHQNRI 522 (723)
Q Consensus 458 g~I~vwd~~~~~~~~~-~~~~~~~v~~l~~~p~~-~l~sgs~----dg-------~I~iwd~~~~~~~~~--l~~~~~~i 522 (723)
..+..||..+++.... +..........+...++ .++.|+. ++ .+..||..+++-... +.......
T Consensus 24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred cceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 3478999988775442 22212222233334556 6667762 12 277889887654321 11111111
Q ss_pred EEEEEcCCCCEEEEEeCC-------CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-Ec-C---
Q 004924 523 TCLAYSLSLNVLVSSGAD-------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-E--- 590 (723)
Q Consensus 523 ~~l~~spdg~~l~s~s~d-------g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~-d--- 590 (723)
..+.+ +++.++.|+.+ ..+.+||..+.+- ..+..++.... .. +++. .+++.++. |. +
T Consensus 104 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W---~~~~~~p~~r~----~~-~~~~-~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 104 GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKW---SEVKNLPIKVY----GH-NVIS-HNGMIYCLGGKTDDKK 172 (318)
T ss_dssp EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEE---EEECCCSSCEE----SC-EEEE-ETTEEEEECCEESSSC
T ss_pred ceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCE---eECCCCCCccc----cc-EEEE-ECCEEEEEcCCCCCCC
Confidence 12222 56677777754 2478888887432 12221221111 11 2222 34555554 32 1
Q ss_pred --CcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC-----CcEEEEECCCCcEEEEeecccccCCCCcc
Q 004924 591 --GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYAQPGTIS 663 (723)
Q Consensus 591 --g~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~~~~~~~g~~~ 663 (723)
..+.+||..+.+-...-.. .....-.+++ .-+++.++.|+.+ ..+.+||..+.+-... .. .+.....
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~---~p~~r~~ 246 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPM-KTPRSMFGVA-IHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM-TE---FPQERSS 246 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCC-SSCCBSCEEE-EETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC-CC---CSSCCBS
T ss_pred ccceEEEEcCCCCEEEECCCC-CCCcccceEE-EECCEEEEEcCcCCCCccceEEEEECCCCeEEEC-CC---CCCcccc
Confidence 3699999987754322111 1111111222 2367777777654 3577899887653322 11 1111111
Q ss_pred CccceEEEEEecCCCCEEEEEECC--------------CcEEEEecCCCceeeecC
Q 004924 664 LELYPLVIAAHPLEPNRIALGLTN--------------GRVHVIEPLESEVEWGKL 705 (723)
Q Consensus 664 ~~v~~~~v~~sp~d~~~las~s~D--------------g~v~iWd~~~~~~~w~~~ 705 (723)
. +++.. ++.+++.||.+ ..+.+||+.+. .|...
T Consensus 247 ----~-~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~ 293 (318)
T 2woz_A 247 ----I-SLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK--EWAGM 293 (318)
T ss_dssp ----C-EEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT--EEEEE
T ss_pred ----e-EEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC--Eehhh
Confidence 1 22222 45777777754 35778888765 57764
No 334
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.10 E-value=1.6 Score=43.87 Aligned_cols=175 Identities=10% Similarity=0.034 Sum_probs=87.5
Q ss_pred CcEEEEEcCCCcEEEEE--eCCCCCeEEEEEcCCC-eEEEEECC-----CcEEEEeCCCCcEEEE--EcCcCCcEEEEEE
Q 004924 458 GKISIFSLETFQTLATF--ANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKAK--LKGHQNRITCLAY 527 (723)
Q Consensus 458 g~I~vwd~~~~~~~~~~--~~~~~~v~~l~~~p~~-~l~sgs~d-----g~I~iwd~~~~~~~~~--l~~~~~~i~~l~~ 527 (723)
..+.+||+.+.+....- ........++.+ ++ .++.|+.+ ..+.+||+.+.+-... +......-..+.+
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 167 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL 167 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE
Confidence 46888998876543321 111112222222 56 66666533 3688999887653322 1111111122222
Q ss_pred cCCCCEEEEEeCC-----CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcC-----CcEEEE
Q 004924 528 SLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-----GQIDVY 596 (723)
Q Consensus 528 spdg~~l~s~s~d-----g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~d-----g~I~vw 596 (723)
+++.++.|+.+ ..+.+||..+.+- ..+..++... ... +++.. +++.++. |.+ ..+.+|
T Consensus 168 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W---~~~~~~p~~r----~~~-~~~~~-~~~iyv~GG~~~~~~~~~v~~y 236 (308)
T 1zgk_A 168 --NRLLYAVGGFDGTNRLNSAECYYPERNEW---RMITAMNTIR----SGA-GVCVL-HNCIYAAGGYDGQDQLNSVERY 236 (308)
T ss_dssp --TTEEEEECCBCSSCBCCCEEEEETTTTEE---EECCCCSSCC----BSC-EEEEE-TTEEEEECCBCSSSBCCCEEEE
T ss_pred --CCEEEEEeCCCCCCcCceEEEEeCCCCeE---eeCCCCCCcc----ccc-eEEEE-CCEEEEEeCCCCCCccceEEEE
Confidence 56677777654 4588899887532 2222122221 112 22222 4555555 333 569999
Q ss_pred ECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC-----CcEEEEECCCCcE
Q 004924 597 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLEL 647 (723)
Q Consensus 597 d~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d-----g~I~iwd~~~~~~ 647 (723)
|+.+.+-...-......... +++. -+++.++.|+.+ ..+.+||..+.+-
T Consensus 237 d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 237 DVETETWTFVAPMKHRRSAL-GITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp ETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred eCCCCcEEECCCCCCCccce-EEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 99876543221111101111 2222 367777777754 4578888877653
No 335
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.07 E-value=1.3 Score=45.44 Aligned_cols=59 Identities=3% Similarity=-0.101 Sum_probs=30.0
Q ss_pred cEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCC------cEEEEECCCCcEEEEee
Q 004924 592 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG------HVKVFDTSTLELRCQIN 652 (723)
Q Consensus 592 ~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg------~I~iwd~~~~~~~~~~~ 652 (723)
.+.+||+.+.+-...-........ ..+...+++.++.|+.++ .|.++++++++......
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred eEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 578999887653322111111111 223345788888888652 46667888877665443
No 336
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.85 E-value=4.6 Score=43.62 Aligned_cols=188 Identities=11% Similarity=0.060 Sum_probs=109.4
Q ss_pred CCEEEEEe--CCcEEEEEcCCCcEEEEEeC-CCCCeEEEEEc--CCC-eEEEEEC-------CCcE---------E---E
Q 004924 449 GSHLFSAS--GGKISIFSLETFQTLATFAN-PPPIATYFILL--PQD-LFAFGFD-------DSSI---------L---V 503 (723)
Q Consensus 449 ~~~l~s~s--dg~I~vwd~~~~~~~~~~~~-~~~~v~~l~~~--p~~-~l~sgs~-------dg~I---------~---i 503 (723)
|+||+.-. +..|-..+++..++-+.+.- ....+..+.+- |+- ++++++. ||.. . .
T Consensus 142 GrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~ 221 (638)
T 3sbq_A 142 GKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNA 221 (638)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEE
T ss_pred eEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEE
Confidence 77888877 67898999999988887763 34567788876 555 7776663 2221 0 1
Q ss_pred EeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCC---------------cEEEEeCCC-------Cce--ee----
Q 004924 504 HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---------------QLCVWDAVG-------WKK--LC---- 555 (723)
Q Consensus 504 wd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg---------------~I~vwd~~~-------~~~--~~---- 555 (723)
.|..+.+....+.- .+....+...++|.+.++.+.+. .+.++++.. |+. +.
T Consensus 222 iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv 300 (638)
T 3sbq_A 222 IDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKT 300 (638)
T ss_dssp EETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCC
T ss_pred EcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCe
Confidence 12222222211110 11222344567777777665431 244444321 110 00
Q ss_pred ------------ceeeeeeecCCCCCCCCeEEEEEccCCCEEEEE--cCCcEEEEECCCC------ce-------eEEec
Q 004924 556 ------------SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTL------NH-------TSQLV 608 (723)
Q Consensus 556 ------------~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s--~dg~I~vwd~~~~------~~-------~~~~~ 608 (723)
...+..++.. .....+.++|||++++++ -+.++.|+|++.. +. +....
T Consensus 301 ~ViD~~~~~~~~~~~~~~iP~p-----ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e 375 (638)
T 3sbq_A 301 PVLDGRKKDGKDSKFTRYVPVP-----KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE 375 (638)
T ss_dssp CEEECSCBTTBCCSSEEEEEES-----SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB
T ss_pred eEEccccccccCCceEEEEeCC-----CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc
Confidence 0011111222 345578899999999985 6789999998731 11 12221
Q ss_pred CCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCC
Q 004924 609 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 645 (723)
Q Consensus 609 ~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~ 645 (723)
-.......+|.++|.-..+-.-|+.|.-|++...
T Consensus 376 ---~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 376 ---LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp ---CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred ---CCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 2556778999999954455668999999998753
No 337
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.72 E-value=0.26 Score=46.62 Aligned_cols=147 Identities=14% Similarity=0.110 Sum_probs=81.2
Q ss_pred CeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcE------EEEEc--CcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 004924 480 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKT------KAKLK--GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 550 (723)
Q Consensus 480 ~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~------~~~l~--~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~ 550 (723)
.+..++|+|+| +.++ .+|.++-.+..+... -..+- +.. ...++.|.|+|.+.++ .||.|+-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 56699999988 5555 677777777654211 11121 111 1468899999987777 569988777633
Q ss_pred Cceeeceee-eeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCce-----eEEecCCCCCCCeEEEEEeeC
Q 004924 551 WKKLCSKFL-HSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH-----TSQLVPDKMDLPITYATYSCD 624 (723)
Q Consensus 551 ~~~~~~~~l-~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~-----~~~~~~~~h~~~v~~l~~spd 624 (723)
.......-- ..+-.+-- ..+..+.+.|+|...++. |+.++-+...++.. ..+......-.....+.|+++
T Consensus 117 ~~~~~Wl~~a~~vg~~gw---~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~ 192 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGW---SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSV 192 (236)
T ss_dssp STTCCHHHHSEEEECSSG---GGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTT
T ss_pred CCCCceeccccEeccCCC---CceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCC
Confidence 211111000 00111111 367899999999988888 88865443332210 011111111223444667788
Q ss_pred CcEEEEEeCCCcE
Q 004924 625 GKCIYVSCKSGHV 637 (723)
Q Consensus 625 g~~l~sgs~dg~I 637 (723)
+...++. +|.+
T Consensus 193 G~l~~v~--~g~~ 203 (236)
T 1tl2_A 193 GTLFGVQ--GGKF 203 (236)
T ss_dssp SCEEEEE--TTEE
T ss_pred CcEEEEe--CCeE
Confidence 7766655 6644
No 338
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.66 E-value=3.6 Score=43.96 Aligned_cols=111 Identities=13% Similarity=0.059 Sum_probs=63.0
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCC--CCCCCeEEEEEccC---CCEEEEE--c---
Q 004924 520 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV--PETTIVNHIQFHPD---QIHLLSI--H--- 589 (723)
Q Consensus 520 ~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~--~~~~~v~~l~~spd---g~~l~~s--~--- 589 (723)
.....++|.|+|+++++-...+.|++++..++... .+..+..... .....+..++|+|+ +..|+++ .
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~---~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVK---TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE---EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe---EEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 35679999999987766544457888876554321 1221221100 00156889999996 5555543 2
Q ss_pred ---------CCcEEEEECCCC-------ceeEEecCCCCCCCeEEEEEeeCCcEEEEEeC
Q 004924 590 ---------EGQIDVYEAPTL-------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 633 (723)
Q Consensus 590 ---------dg~I~vwd~~~~-------~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~ 633 (723)
...|.-|+...+ +.+..............++|.|||.+.++.+.
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665332 11221111122345789999999987776543
No 339
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.48 E-value=5.1 Score=42.78 Aligned_cols=107 Identities=13% Similarity=0.053 Sum_probs=61.1
Q ss_pred CCCeEEEEEcCCCeEEEEECC-CcEEEEeCCCCcEEE--EEcC------cCCcEEEEEEcCC---CCEEEEEeC------
Q 004924 478 PPIATYFILLPQDLFAFGFDD-SSILVHCPCTKKTKA--KLKG------HQNRITCLAYSLS---LNVLVSSGA------ 539 (723)
Q Consensus 478 ~~~v~~l~~~p~~~l~sgs~d-g~I~iwd~~~~~~~~--~l~~------~~~~i~~l~~spd---g~~l~s~s~------ 539 (723)
-...+.++|.|+|.++++... +.|++++..+++... .+.. .......++|+|+ +..|..+..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 445679999999944444555 479988866565432 2221 2456779999995 445544432
Q ss_pred -------CCcEEEEeCCCC--ceeeceeee-eeecCCCCCCCCeEEEEEccCCCEEEE
Q 004924 540 -------DAQLCVWDAVGW--KKLCSKFLH-SFQTGLVPETTIVNHIQFHPDQIHLLS 587 (723)
Q Consensus 540 -------dg~I~vwd~~~~--~~~~~~~l~-~~~~~~~~~~~~v~~l~~spdg~~l~~ 587 (723)
...|.-|+...+ .......+. .++.... .....++|.|||.+.++
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~---H~~~~l~f~pDG~Lyv~ 160 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKD---HQSGRLVIGPDQKIYYT 160 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSS---CCEEEEEECTTSCEEEE
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCC---CCCCeEeECCCCeEEEE
Confidence 134555555432 111111221 1222211 35789999999987776
No 340
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.43 E-value=4.6 Score=40.47 Aligned_cols=218 Identities=5% Similarity=0.008 Sum_probs=110.6
Q ss_pred cCCCCCEEEEEeCCCeEEEEeecccCCCCceeEEecCCCCCCCceEEEEEeCCCCEEEEEECCCc----EEEEeccCCcc
Q 004924 333 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT----HKLWKWQSNKQ 408 (723)
Q Consensus 333 ~spdg~~la~~s~dg~v~iw~~~~~~~~~~~~~~~l~~~~h~~~V~~l~fspdg~~las~s~dg~----i~iWd~~~~~~ 408 (723)
++++|.+|......+.=.||.+... ......+. .+ .+--++++|.+|+.+..... ..+|..
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~d--g~~~~~l~------~~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~----- 85 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNID--GSNIHKLS------ND--TAMYINADKNYVYYVRNNNQKITSQTFFSY----- 85 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETT--SCSCEEEE------EE--EEEEEEECSSEEEEEEECC------CCSSC-----
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCC--CCCCEEcc------CC--ceeeEEEcCCEEEEEECCCCcccccceecc-----
Confidence 4567788887764222245555431 23344332 12 24456899999998876421 000000
Q ss_pred cccccceeeeeEEEecCCCeeeeeccCCCCCCCeEEEEEeCCEEEEEe---C--CcEEEEEcCCCcEEEEEeCCCCCeEE
Q 004924 409 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS---G--GKISIFSLETFQTLATFANPPPIATY 483 (723)
Q Consensus 409 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~l~s~s---d--g~I~vwd~~~~~~~~~~~~~~~~v~~ 483 (723)
....+...+...+..... .......++..+++|+-.. + ..|...++.. .....+..+..
T Consensus 86 ------n~~~Iy~i~~dg~~~~~l-----~~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~---- 149 (302)
T 3s25_A 86 ------DRNSLCRIKRNGHGSTVL-----DPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL---- 149 (302)
T ss_dssp ------CSEEEEEEETTSCCCEEE-----ECSCEEEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC----
T ss_pred ------CCCeEEEEeCCCCcceEe-----ecCCccEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc----
Confidence 000111122222221110 1122223333377766554 3 4555566653 33344443322
Q ss_pred EEEcCCC-eEEEEEC-CCcEEEEeCCCCcEEEEEcCcCCcEEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCceeeceee
Q 004924 484 FILLPQD-LFAFGFD-DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD--AQLCVWDAVGWKKLCSKFL 559 (723)
Q Consensus 484 l~~~p~~-~l~sgs~-dg~I~iwd~~~~~~~~~l~~~~~~i~~l~~spdg~~l~s~s~d--g~I~vwd~~~~~~~~~~~l 559 (723)
..+++++ .|+-.+. ...|.+.++..+.....+.+ ... ..++|++.+|+-...+ ..|..-++.++.. ..
T Consensus 150 ~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~---~~- 221 (302)
T 3s25_A 150 FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP---VV- 221 (302)
T ss_dssp CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC---EE-
T ss_pred eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe---EE-
Confidence 3456778 6654444 67899999877654444432 222 2356889888877654 3566666666321 11
Q ss_pred eeeecCCCCCCCCeEEEEEccCCCEEEEE---cCCcEEEEECC
Q 004924 560 HSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAP 599 (723)
Q Consensus 560 ~~~~~~~~~~~~~v~~l~~spdg~~l~~s---~dg~I~vwd~~ 599 (723)
+.. ..+ ..|+|++.+|+-+ ..+.|..-++.
T Consensus 222 --Lt~------~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 222 --LTE------ANI--EHYNVYGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp --CSC------SCE--EEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred --EeC------CCc--ceEEECCCEEEEEECCCCcEEEEEECC
Confidence 111 233 3478889888764 23567777774
No 341
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.43 E-value=4.5 Score=40.45 Aligned_cols=100 Identities=11% Similarity=0.091 Sum_probs=52.7
Q ss_pred CCEEEEEe-C--------CcEEEEEcCCCcEEEEEeCCCCCe-EEEEEcCCC-eEEEEEC-C-----CcEEEEeCCCCcE
Q 004924 449 GSHLFSAS-G--------GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFD-D-----SSILVHCPCTKKT 511 (723)
Q Consensus 449 ~~~l~s~s-d--------g~I~vwd~~~~~~~~~~~~~~~~v-~~l~~~p~~-~l~sgs~-d-----g~I~iwd~~~~~~ 511 (723)
+..++.|+ + ..+.+||..+.+....-..+.... .+++. -++ .++.|+. + ..+.+||+.+.+-
T Consensus 99 ~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 177 (315)
T 4asc_A 99 NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW 177 (315)
T ss_dssp TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEE
T ss_pred CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeE
Confidence 55555555 2 358899998765432211111111 12222 355 6666665 2 3689999887643
Q ss_pred EEE--EcCcCCcEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCC
Q 004924 512 KAK--LKGHQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGW 551 (723)
Q Consensus 512 ~~~--l~~~~~~i~~l~~spdg~~l~s~s~dg-----~I~vwd~~~~ 551 (723)
... +......-.++.+ +++.++.|+.++ .+.+||..+.
T Consensus 178 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 178 KELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp EECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred EECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCC
Confidence 321 1111111122222 567777777654 4788998875
No 342
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.26 E-value=2.7 Score=43.02 Aligned_cols=88 Identities=15% Similarity=0.126 Sum_probs=43.6
Q ss_pred CCEEEEEe--CCcEEEEEcCC--CcEEE--EEe-CCCCCeEEEEEcCCC-eEEEEEC-C---------CcEEEEeCCCCc
Q 004924 449 GSHLFSAS--GGKISIFSLET--FQTLA--TFA-NPPPIATYFILLPQD-LFAFGFD-D---------SSILVHCPCTKK 510 (723)
Q Consensus 449 ~~~l~s~s--dg~I~vwd~~~--~~~~~--~~~-~~~~~v~~l~~~p~~-~l~sgs~-d---------g~I~iwd~~~~~ 510 (723)
+..++.|+ ...+.++|+.+ .+... .+. .......++.+ ++ .++.|+. + ..+.+||+.+.+
T Consensus 20 ~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 20 DTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 55556666 46789999864 32221 111 11111222222 46 5566654 2 468899988765
Q ss_pred EEEEE--c-CcCCcEEEEEEcCCCCEEEEEeCC
Q 004924 511 TKAKL--K-GHQNRITCLAYSLSLNVLVSSGAD 540 (723)
Q Consensus 511 ~~~~l--~-~~~~~i~~l~~spdg~~l~s~s~d 540 (723)
-...- . .......++. .+++.++.|+.+
T Consensus 98 W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 98 WVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp EEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred EEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence 33211 1 1111112222 467777888754
No 343
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.25 E-value=1 Score=46.39 Aligned_cols=106 Identities=9% Similarity=-0.023 Sum_probs=58.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeee---cCCCCCCCCeEEEEEccC---CCEEEEE--c---
Q 004924 521 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ---TGLVPETTIVNHIQFHPD---QIHLLSI--H--- 589 (723)
Q Consensus 521 ~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~---~~~~~~~~~v~~l~~spd---g~~l~~s--~--- 589 (723)
....++|.|+|+.++++...|.|++++... ... ..+..+. .... .....++++|+ +..|+++ .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~--~~~~~~~~v~~~g~---~g~~gia~~pdf~~~g~lYv~~~~~~~ 92 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGK-GLS--APLSGVPDVWAHGQ---GGLLDVVLAPDFAQSRRIWLSYSEVGD 92 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTT-EEC--CCCBSCCCCCCSTT---CSEEEEEECTTHHHHCEEEEEEEEECS
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCC-cee--eEecCCcccccCCC---CCceeEEECCCCCCCCEEEEEEeCCCC
Confidence 467899999998344556789999998543 211 1111111 1111 46789999996 4555542 2
Q ss_pred ----CCcEEEEECCCC--c--eeEEe-c--CC--CCCCCeEEEEEeeCCcEEEEEe
Q 004924 590 ----EGQIDVYEAPTL--N--HTSQL-V--PD--KMDLPITYATYSCDGKCIYVSC 632 (723)
Q Consensus 590 ----dg~I~vwd~~~~--~--~~~~~-~--~~--~h~~~v~~l~~spdg~~l~sgs 632 (723)
...|..|+.... . ....+ . +. ........++|+|||.+.++.+
T Consensus 93 ~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 148 (353)
T 2g8s_A 93 DGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG 148 (353)
T ss_dssp SSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred CCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence 235777776533 1 11111 1 10 0112245799999996555543
No 344
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.24 E-value=3.9 Score=40.98 Aligned_cols=175 Identities=10% Similarity=0.061 Sum_probs=84.6
Q ss_pred EEEEEcCCCcEEEE--EeCCCCCeEEEEEcCCC-eEEEEECC-------CcEEEEeCCCCcEEEEEcCcCCcE--EEEEE
Q 004924 460 ISIFSLETFQTLAT--FANPPPIATYFILLPQD-LFAFGFDD-------SSILVHCPCTKKTKAKLKGHQNRI--TCLAY 527 (723)
Q Consensus 460 I~vwd~~~~~~~~~--~~~~~~~v~~l~~~p~~-~l~sgs~d-------g~I~iwd~~~~~~~~~l~~~~~~i--~~l~~ 527 (723)
+.+||..+++.... +.........+.+ ++ .++.|+.+ ..+.+||+.+.+-... .....+. .+++.
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~ 156 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV-KNLPIKVYGHNVIS 156 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE-CCCSSCEESCEEEE
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC-CCCCCcccccEEEE
Confidence 67788877654332 1111111222222 56 66666653 2588899887654322 1111111 11122
Q ss_pred cCCCCEEEEEeC------CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcC-----CcEEE
Q 004924 528 SLSLNVLVSSGA------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-----GQIDV 595 (723)
Q Consensus 528 spdg~~l~s~s~------dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~d-----g~I~v 595 (723)
.+++.++.|+. -..+.+||..+.+- ..+..++... ... +++.. +++.++. |.+ ..+.+
T Consensus 157 -~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W---~~~~~~p~~r----~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~ 226 (318)
T 2woz_A 157 -HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW---KDLAPMKTPR----SMF-GVAIH-KGKIVIAGGVTEDGLSASVEA 226 (318)
T ss_dssp -ETTEEEEECCEESSSCBCCCEEEEETTTTEE---EEECCCSSCC----BSC-EEEEE-TTEEEEEEEEETTEEEEEEEE
T ss_pred -ECCEEEEEcCCCCCCCccceEEEEcCCCCEE---EECCCCCCCc----ccc-eEEEE-CCEEEEEcCcCCCCccceEEE
Confidence 35666676664 23588999987532 2222122221 111 22222 4555554 422 35788
Q ss_pred EECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC--------------CcEEEEECCCCcEEE
Q 004924 596 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS--------------GHVKVFDTSTLELRC 649 (723)
Q Consensus 596 wd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d--------------g~I~iwd~~~~~~~~ 649 (723)
||+.+.+-...-......... ++ ...+++.++.|+.+ ..+.+||..+.+-..
T Consensus 227 yd~~~~~W~~~~~~p~~r~~~-~~-~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 227 FDLKTNKWEVMTEFPQERSSI-SL-VSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp EETTTCCEEECCCCSSCCBSC-EE-EEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred EECCCCeEEECCCCCCcccce-EE-EEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence 999876543221111111111 22 23467777777654 357888888765433
No 345
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.14 E-value=2.5 Score=43.22 Aligned_cols=112 Identities=15% Similarity=0.111 Sum_probs=64.9
Q ss_pred EEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEE--EE----cCcCCcEEEEEEcCC---CCEEEEE-e--C
Q 004924 473 TFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA--KL----KGHQNRITCLAYSLS---LNVLVSS-G--A 539 (723)
Q Consensus 473 ~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~--~l----~~~~~~i~~l~~spd---g~~l~s~-s--~ 539 (723)
.+...-...+.++|.|+| .+++--..|.|++++..+++... .+ .........++++|+ +..|... + .
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 344444567899999999 55554448999999876665422 22 123456889999995 3344432 2 3
Q ss_pred CCcEEEEeCCCCc-----eeecee-eeeeecCCCCCCCCeEEEEEccCCCEEEE
Q 004924 540 DAQLCVWDAVGWK-----KLCSKF-LHSFQTGLVPETTIVNHIQFHPDQIHLLS 587 (723)
Q Consensus 540 dg~I~vwd~~~~~-----~~~~~~-l~~~~~~~~~~~~~v~~l~~spdg~~l~~ 587 (723)
++.|.-|....+. ...... +..++.... .....++|.|||.+.++
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~---H~g~~l~fgpDG~Lyvt 156 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVI---HNGGRIAFGPDKMLYAG 156 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSS---CCCCCEEECTTSCEEEE
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCC---ccCccccCCCCCCEEEE
Confidence 4556666665421 111111 122222111 24567999999977666
No 346
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.03 E-value=5.5 Score=39.85 Aligned_cols=170 Identities=9% Similarity=0.092 Sum_probs=94.7
Q ss_pred EeCCEEEEEe---CCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCC-eEEEEEC-C-------------CcEEEEeCCC
Q 004924 447 LRGSHLFSAS---GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-D-------------SSILVHCPCT 508 (723)
Q Consensus 447 ~s~~~l~s~s---dg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~-d-------------g~I~iwd~~~ 508 (723)
+.|++++... ++.|...+..... ...+... .+--++++| .|+-+.. + ..|+..++..
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 3466666554 4556666654333 3333211 133457888 5554443 2 4677888776
Q ss_pred CcEEEEEcCcCCcEEEEEEcCCCCEEEEEe--C--CCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCE
Q 004924 509 KKTKAKLKGHQNRITCLAYSLSLNVLVSSG--A--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 584 (723)
Q Consensus 509 ~~~~~~l~~~~~~i~~l~~spdg~~l~s~s--~--dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~ 584 (723)
++...... . . +..|++++++|+-.. . +..|...++.+.. ...+... .+ ..++|+++.
T Consensus 98 ~~~~~l~~-~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~------~~~lt~~------~~--~~~~~~g~~ 158 (302)
T 3s25_A 98 HGSTVLDP-D--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE------KKKIKNH------YL--FTCNTSDRY 158 (302)
T ss_dssp CCCEEEEC-S--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC------CEEEESS------CC--CCSEEETTE
T ss_pred CcceEeec-C--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC------eEEEeCC------Cc--eEeeEECCE
Confidence 65333222 1 1 236778888888776 2 3456666666421 1212222 12 456788988
Q ss_pred EEEE--cCCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC--CcEEEEECCCCc
Q 004924 585 LLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS--GHVKVFDTSTLE 646 (723)
Q Consensus 585 l~~s--~dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d--g~I~iwd~~~~~ 646 (723)
|+-. ....|++.++..+... .+.. .... ..++|++.+|+-...+ ..|..-++..+.
T Consensus 159 iy~t~~g~~~Iy~~~l~g~~~~-~l~~----~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 159 FYYNNPKNGQLYRYDTASQSEA-LFYD----CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp EEEECTTTCCEEEEETTTTEEE-EEEC----SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred EEEEeCCCceEEEEECCCCCEE-EEeC----CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 8864 3568999998765543 3321 2222 3466999988866544 356666666554
No 347
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.63 E-value=1.6 Score=41.36 Aligned_cols=143 Identities=8% Similarity=-0.034 Sum_probs=78.6
Q ss_pred eEEEEECCCcEEEEeCCCCc------EEEEEcC-cCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeee-e
Q 004924 491 LFAFGFDDSSILVHCPCTKK------TKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-F 562 (723)
Q Consensus 491 ~l~sgs~dg~I~iwd~~~~~------~~~~l~~-~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~-~ 562 (723)
.|++...| +++.=...++. ....+.. -=..+.+++|+|+|.+.++ .+|.++-.+..++.........+ +
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~I 82 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKI 82 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEe
Confidence 55566666 55554443332 1122211 1236779999999986666 67777666654421111100010 1
Q ss_pred ec-CCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEECCCCcee-----EEecCCCCCCCeEEEEEeeCCcEEEEEeCCCc
Q 004924 563 QT-GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHT-----SQLVPDKMDLPITYATYSCDGKCIYVSCKSGH 636 (723)
Q Consensus 563 ~~-~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~-----~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~ 636 (723)
-. +- ..-..+.|.|+|.+.++ .||.|+-++-.+...- .+.....--..+..+.|.|+|.+.++. |+.
T Consensus 83 G~~Gw----~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ 155 (236)
T 1tl2_A 83 GNGGW----NQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQ 155 (236)
T ss_dssp ECSCG----GGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred ccccc----ccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCc
Confidence 00 11 12368999999988777 7799988876432110 001000012467899999999877766 787
Q ss_pred EEEEECC
Q 004924 637 VKVFDTS 643 (723)
Q Consensus 637 I~iwd~~ 643 (723)
++-+...
T Consensus 156 lyr~~~P 162 (236)
T 1tl2_A 156 FYKALPP 162 (236)
T ss_dssp EEEECCC
T ss_pred EEecCCC
Confidence 6544333
No 348
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.18 E-value=4.2 Score=46.11 Aligned_cols=196 Identities=10% Similarity=0.054 Sum_probs=101.1
Q ss_pred CCEEEEEe-C----CcEEEEEcCCCcEEEEE-e-----CCCC-CeEEEEEcC-CC-eEEEEECCC------cEEEEeCCC
Q 004924 449 GSHLFSAS-G----GKISIFSLETFQTLATF-A-----NPPP-IATYFILLP-QD-LFAFGFDDS------SILVHCPCT 508 (723)
Q Consensus 449 ~~~l~s~s-d----g~I~vwd~~~~~~~~~~-~-----~~~~-~v~~l~~~p-~~-~l~sgs~dg------~I~iwd~~~ 508 (723)
+..++.|+ + ..+.+||..+++....- . .... .-.+++..+ ++ .++.|+.++ .+.+||..+
T Consensus 398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t 477 (695)
T 2zwa_A 398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT 477 (695)
T ss_dssp SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence 66666666 3 46888998877654433 1 1111 112333333 66 677776443 588899887
Q ss_pred CcEEEEEcCcC-CcEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccC-CCE
Q 004924 509 KKTKAKLKGHQ-NRITCLAYSLSLNVLVSSGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIH 584 (723)
Q Consensus 509 ~~~~~~l~~~~-~~i~~l~~spdg~~l~s~s~dg--~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spd-g~~ 584 (723)
.+-...-.... ..-.+++...+++.++.|+.++ .+.+||..+..-........++... ....++.+..+ ++.
T Consensus 478 ~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r----~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 478 REWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNS----LVSAGLEFDPVSKQG 553 (695)
T ss_dssp TEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSC----CBSCEEEEETTTTEE
T ss_pred CcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcc----cceeEEEEeCCCCEE
Confidence 64332211011 1111233324778888887655 6899999885321111100012121 12234555655 445
Q ss_pred EEEE-c--C-----CcEEEEECCCCce-----eEEecC-CCCCCCeEEEEEeeCCcEEEEEeC--------CCcEEEEEC
Q 004924 585 LLSI-H--E-----GQIDVYEAPTLNH-----TSQLVP-DKMDLPITYATYSCDGKCIYVSCK--------SGHVKVFDT 642 (723)
Q Consensus 585 l~~s-~--d-----g~I~vwd~~~~~~-----~~~~~~-~~h~~~v~~l~~spdg~~l~sgs~--------dg~I~iwd~ 642 (723)
++.| . + +.+.+||+.+... ...+.. ......-.+++...+++.++.|+. ...+.+||.
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~ 633 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDP 633 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEET
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEEC
Confidence 5543 3 2 3589999987761 112211 001111123333344777777774 356999999
Q ss_pred CCCcEE
Q 004924 643 STLELR 648 (723)
Q Consensus 643 ~~~~~~ 648 (723)
.+.+-.
T Consensus 634 ~t~~W~ 639 (695)
T 2zwa_A 634 LSETLT 639 (695)
T ss_dssp TTTEEE
T ss_pred CCCeEE
Confidence 987644
No 349
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=90.03 E-value=15 Score=41.61 Aligned_cols=196 Identities=11% Similarity=0.032 Sum_probs=99.4
Q ss_pred eEEEEECC----CcEEEEeCCCCcEEEEE-c-----Cc-CCcEEEEEEcC-CCCEEEEEeCCC------cEEEEeCCCCc
Q 004924 491 LFAFGFDD----SSILVHCPCTKKTKAKL-K-----GH-QNRITCLAYSL-SLNVLVSSGADA------QLCVWDAVGWK 552 (723)
Q Consensus 491 ~l~sgs~d----g~I~iwd~~~~~~~~~l-~-----~~-~~~i~~l~~sp-dg~~l~s~s~dg------~I~vwd~~~~~ 552 (723)
.++.|+.+ ..+.+||..+++....- . .. ...-.+++..+ +++.++.|+.++ .+.+||..+.+
T Consensus 400 iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~ 479 (695)
T 2zwa_A 400 VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTRE 479 (695)
T ss_dssp EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTE
T ss_pred EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCc
Confidence 55566543 36788888776544322 1 01 11112333333 677777777543 47889988743
Q ss_pred eeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcC--CcEEEEECCCCceeEEec---CCCCCCCeEEEEEeeC-C
Q 004924 553 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE--GQIDVYEAPTLNHTSQLV---PDKMDLPITYATYSCD-G 625 (723)
Q Consensus 553 ~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~d--g~I~vwd~~~~~~~~~~~---~~~h~~~v~~l~~spd-g 625 (723)
- ..+..++... .-.+++...+++.++. |.+ +.+.+||..+.+-...-. ..........+.+..+ +
T Consensus 480 W---~~~~~~p~~R-----~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~ 551 (695)
T 2zwa_A 480 W---SMIKSLSHTR-----FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSK 551 (695)
T ss_dssp E---EECCCCSBCC-----BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTT
T ss_pred E---EECCCCCCCc-----ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCC
Confidence 2 2222222221 1123333236666666 432 279999998766432211 0001112223555555 6
Q ss_pred cEEEEEeC--C-----CcEEEEECCCCcE-----EEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECC------
Q 004924 626 KCIYVSCK--S-----GHVKVFDTSTLEL-----RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN------ 687 (723)
Q Consensus 626 ~~l~sgs~--d-----g~I~iwd~~~~~~-----~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D------ 687 (723)
+.++.|+. + +.+.+||..+..- -..+...... + .....++.+. ++.+++.||.+
T Consensus 552 ~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~--~----R~~~~~~~~~--~~~iyv~GG~~~~~~~~ 623 (695)
T 2zwa_A 552 QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLF--Q----RYGSQIKYIT--PRKLLIVGGTSPSGLFD 623 (695)
T ss_dssp EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGG--C----CBSCEEEEEE--TTEEEEECCBCSSCCCC
T ss_pred EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCC--C----cccceEEEeC--CCEEEEECCccCCCCCC
Confidence 67777765 2 4589999988761 1112110001 1 0111123332 36777877743
Q ss_pred --CcEEEEecCCCceeeec
Q 004924 688 --GRVHVIEPLESEVEWGK 704 (723)
Q Consensus 688 --g~v~iWd~~~~~~~w~~ 704 (723)
..|.+||+.+. .|..
T Consensus 624 ~~~~v~~yd~~t~--~W~~ 640 (695)
T 2zwa_A 624 RTNSIISLDPLSE--TLTS 640 (695)
T ss_dssp TTTSEEEEETTTT--EEEE
T ss_pred CCCeEEEEECCCC--eEEE
Confidence 46889998876 4764
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=89.34 E-value=9.6 Score=37.61 Aligned_cols=221 Identities=12% Similarity=0.051 Sum_probs=113.0
Q ss_pred CeEEEEEe-CCEEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCC-CcEEEEEcCc
Q 004924 441 SISCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KKTKAKLKGH 518 (723)
Q Consensus 441 ~V~~v~~s-~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~-~~~~~~l~~~ 518 (723)
.|..++.. ...++.. ||.|..|-......+..-......|..++......++. . ||.|+.|-... ++.-.. ..-
T Consensus 25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P-~~~ 100 (282)
T 3qhy_B 25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVP-AEA 100 (282)
T ss_dssp SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCC-GGG
T ss_pred CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCC-ccc
Confidence 46666665 4444444 99999997654221111011123466666554433333 4 89999997553 221100 011
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEEC
Q 004924 519 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 598 (723)
Q Consensus 519 ~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~ 598 (723)
...|..++...+. .+.-. ||.|+.|-....-.. . ++.... ..|..++...+...+ .. ||.++.|-.
T Consensus 101 ~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gql-----g-~~~~~~---~~i~~i~~G~~~~~~-l~-~G~v~~wG~ 166 (282)
T 3qhy_B 101 RSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQT-----T-VPAEAQ---SGVTALDGGVYTALA-VK-NGGVIAWGD 166 (282)
T ss_dssp SSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTT-----S-CCGGGG---SSEEEEEECSSEEEE-EE-TTEEEEEEC
T ss_pred CCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcC-----C-CCccCC---CCeEEEEcccCEEEE-EE-CCEEEEecC
Confidence 2467777766543 33344 999999976542111 1 111111 467777665443222 24 799999976
Q ss_pred CCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCC
Q 004924 599 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 678 (723)
Q Consensus 599 ~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 678 (723)
.....+.. +..-...|..++...+.. ++. .||.|+.|-....-.+. +... ....+ ..++... .
T Consensus 167 n~~gqlg~--p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg-~p~~-------~~~~v--~~i~~G~--~ 229 (282)
T 3qhy_B 167 NYFGQTTV--PAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTT-VPTE-------ALSGV--SAIASGE--W 229 (282)
T ss_dssp CTTSTTSC--CGGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTC-CCGG-------GGSSC--CEEEECS--S
T ss_pred CCCCCCCC--ceecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCC-CCcc-------cCCCc--eEEEcCC--C
Confidence 54221111 001134577776644332 333 59999999765432111 0000 01123 3666544 2
Q ss_pred CEEEEEECCCcEEEEecCCC
Q 004924 679 NRIALGLTNGRVHVIEPLES 698 (723)
Q Consensus 679 ~~las~s~Dg~v~iWd~~~~ 698 (723)
..+|. . ||.|+.|--...
T Consensus 230 h~~al-~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 230 YSLAL-K-NGKVIAWGSSRT 247 (282)
T ss_dssp CEEEE-E-TTEEEEESTTCC
T ss_pred EEEEE-E-CCEEEEecCCCC
Confidence 33333 4 999999987654
No 351
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=87.74 E-value=22 Score=34.89 Aligned_cols=182 Identities=9% Similarity=-0.021 Sum_probs=94.8
Q ss_pred CeEEEEEe-CCEEEEEeCCcEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeCCC-CcEEEEEcCc
Q 004924 441 SISCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KKTKAKLKGH 518 (723)
Q Consensus 441 ~V~~v~~s-~~~l~s~sdg~I~vwd~~~~~~~~~~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~~~-~~~~~~l~~~ 518 (723)
.|..++.. ...++. .||.|..|-......+..-..-...|..++..... .+.-. ||.|+.|-... ++.- .-...
T Consensus 64 ~i~~ia~G~~hs~~l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~h-s~al~-~G~v~~wG~n~~gqlg-~~~~~ 139 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWA-SYALK-DGKVIAWGDDSDGQTT-VPAEA 139 (282)
T ss_dssp CCCEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTE-EEEEE-TTEEEEEECCTTSTTS-CCGGG
T ss_pred CEEEEEeCCCEEEEE-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCE-EEEEe-CCeEEEecCCCCCcCC-CCccC
Confidence 45566655 444444 48999999765321111101112357777665543 33334 89999997554 2211 01112
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCEEEEEcCCcEEEEEC
Q 004924 519 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 598 (723)
Q Consensus 519 ~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~s~dg~I~vwd~ 598 (723)
...|..++...+.. +.-. ||.+..|-........ ++.... ..|..++...+...+ . .+|.++.|-.
T Consensus 140 ~~~i~~i~~G~~~~--~~l~-~G~v~~wG~n~~gqlg------~p~~~~---~~v~~i~~G~~hs~a-l-~~G~v~~wG~ 205 (282)
T 3qhy_B 140 QSGVTALDGGVYTA--LAVK-NGGVIAWGDNYFGQTT------VPAEAQ---SGVDDVAGGIFHSLA-L-KDGKVIAWGD 205 (282)
T ss_dssp GSSEEEEEECSSEE--EEEE-TTEEEEEECCTTSTTS------CCGGGG---SSEEEEEECSSEEEE-E-ETTEEEEEEC
T ss_pred CCCeEEEEcccCEE--EEEE-CCEEEEecCCCCCCCC------CceecC---CCeEEEEecCCEEEE-E-ECCeEEEEEC
Confidence 34576666554332 2233 7999999765421111 111111 467777766554433 4 6899999976
Q ss_pred CCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCC
Q 004924 599 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 645 (723)
Q Consensus 599 ~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~ 645 (723)
.....+.. .. .....|..++...+...++ . ||.|+.|-....
T Consensus 206 n~~gqlg~-p~-~~~~~v~~i~~G~~h~~al--~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 206 NRYKQTTV-PT-EALSGVSAIASGEWYSLAL--K-NGKVIAWGSSRT 247 (282)
T ss_dssp CTTSTTCC-CG-GGGSSCCEEEECSSCEEEE--E-TTEEEEESTTCC
T ss_pred CCCCCCCC-Cc-ccCCCceEEEcCCCEEEEE--E-CCEEEEecCCCC
Confidence 54221111 00 1134566666544433333 3 999999976653
No 352
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=83.96 E-value=4.1 Score=44.02 Aligned_cols=125 Identities=10% Similarity=-0.028 Sum_probs=74.5
Q ss_pred cEEEEeCCC----CcEEEEEcCcCCcEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCce-------eecee-eeeeecCC
Q 004924 500 SILVHCPCT----KKTKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKK-------LCSKF-LHSFQTGL 566 (723)
Q Consensus 500 ~I~iwd~~~----~~~~~~l~~~~~~i~~l~~spdg~~l~s~s-~dg~I~vwd~~~~~~-------~~~~~-l~~~~~~~ 566 (723)
.|.+.|.+. +..+..+-.-......+..+|||+++++++ -+.++.++|++.-.. ..... ......+
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G- 377 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG- 377 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC-
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC-
Confidence 366777665 322222222334456788999999988776 478899999874211 00001 1112223
Q ss_pred CCCCCCeEEEEEccCCCEEEEE--cCCcEEEEECCCC----------ceeEEecCCCCCCCeEEEEE------eeCCcEE
Q 004924 567 VPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTL----------NHTSQLVPDKMDLPITYATY------SCDGKCI 628 (723)
Q Consensus 567 ~~~~~~v~~l~~spdg~~l~~s--~dg~I~vwd~~~~----------~~~~~~~~~~h~~~v~~l~~------spdg~~l 628 (723)
......+|.++| ..+++ -|..|.-|++... ..+..+.. ...+-.+.- .|||+||
T Consensus 378 ----lGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv---~YqpGH~~~~~get~~~dGk~l 449 (638)
T 3sbq_A 378 ----LGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDV---HYQPGHLHASLCETNEADGKWL 449 (638)
T ss_dssp ----SCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEEC---SSCEEEEEETTTTSTTCCSCEE
T ss_pred ----CcccEEEECCCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeecccc---ccCCcccccCCCccCCCCccEE
Confidence 457789999999 55554 8999999998642 23444432 222333333 3788888
Q ss_pred EEEeC
Q 004924 629 YVSCK 633 (723)
Q Consensus 629 ~sgs~ 633 (723)
++...
T Consensus 450 v~lnK 454 (638)
T 3sbq_A 450 VALSK 454 (638)
T ss_dssp EEEES
T ss_pred EEecc
Confidence 88753
No 353
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=83.80 E-value=42 Score=34.50 Aligned_cols=154 Identities=10% Similarity=0.092 Sum_probs=87.2
Q ss_pred CcEEEEEcCCC--cEEEEEeCC------CCCeEEEEEc---CC----C-eEEEE-ECCCcEEEEeCCCCcEEEEEcCcCC
Q 004924 458 GKISIFSLETF--QTLATFANP------PPIATYFILL---PQ----D-LFAFG-FDDSSILVHCPCTKKTKAKLKGHQN 520 (723)
Q Consensus 458 g~I~vwd~~~~--~~~~~~~~~------~~~v~~l~~~---p~----~-~l~sg-s~dg~I~iwd~~~~~~~~~l~~~~~ 520 (723)
-.|.+||+.++ +.++++.-+ ...+..+.+. |. + ++..+ +..+.|.|+|+.+++..+.+. ..
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~--~~ 200 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTH--PT 200 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEEC--GG
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEcc--CC
Confidence 35778999998 888887532 3356777777 22 3 43333 356789999999998877663 21
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccC----CCEEEEE--cCCcEE
Q 004924 521 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD----QIHLLSI--HEGQID 594 (723)
Q Consensus 521 ~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spd----g~~l~~s--~dg~I~ 594 (723)
|.|+.... +.+.+ ..+. +. ..+..++++|+ ++.|+-+ ....++
T Consensus 201 ------~~pd~~~~-----------~~i~G------~~~~-~~-------~Gi~gIaLsp~~~~~~~~LYf~plss~~ly 249 (381)
T 3q6k_A 201 ------FKAERPTK-----------FDYGG------KEYE-FK-------AGIFGITLGDRDSEGNRPAYYLAGSAIKVY 249 (381)
T ss_dssp ------GSCCSCEE-----------EEETT------EEEE-EC-------CCEEEEEECCCCTTSCCEEEEEESSCSEEE
T ss_pred ------CccccCcc-----------eEECC------EEeE-ec-------cCceEEEecCCcCCCCeEEEEEECCCCcEE
Confidence 34441111 11111 1111 11 46888999988 6777764 222333
Q ss_pred EEE---CCCC---ceeEEecCCCCCCCeEEEEEe-eCCcEEEEEeCCCcEEEEECCC
Q 004924 595 VYE---APTL---NHTSQLVPDKMDLPITYATYS-CDGKCIYVSCKSGHVKVFDTST 644 (723)
Q Consensus 595 vwd---~~~~---~~~~~~~~~~h~~~v~~l~~s-pdg~~l~sgs~dg~I~iwd~~~ 644 (723)
--. ++.. ..+..+-..+....-..+++. .+|...++--+.+.|..|+..+
T Consensus 250 ~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 250 SVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 222 1111 112222111101334456675 5777777777889999999876
No 354
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=81.10 E-value=14 Score=38.23 Aligned_cols=147 Identities=10% Similarity=0.061 Sum_probs=77.4
Q ss_pred cEEEEeCCCC--ceeeceeee-eeecCCCCCCCCeEEEEEc---cC----CCEEEEE--cCCcEEEEECCCCceeEEec-
Q 004924 542 QLCVWDAVGW--KKLCSKFLH-SFQTGLVPETTIVNHIQFH---PD----QIHLLSI--HEGQIDVYEAPTLNHTSQLV- 608 (723)
Q Consensus 542 ~I~vwd~~~~--~~~~~~~l~-~~~~~~~~~~~~v~~l~~s---pd----g~~l~~s--~dg~I~vwd~~~~~~~~~~~- 608 (723)
.|.+||++++ +.+....+. ...... ..+..+.+. |+ +.+++.+ ..+.|.|+|+.+++..+...
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~----S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~ 199 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKP----TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHP 199 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCG----GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECG
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccC----CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccC
Confidence 4667788776 554443332 011111 467788887 32 3444444 56789999999887655431
Q ss_pred ---CCC--------C----CCCeEEEEEeeC----CcEEEEEeCCC-cEEEEE---CCCCcEEEEeecccccCCCCccCc
Q 004924 609 ---PDK--------M----DLPITYATYSCD----GKCIYVSCKSG-HVKVFD---TSTLELRCQINLTAYAQPGTISLE 665 (723)
Q Consensus 609 ---~~~--------h----~~~v~~l~~spd----g~~l~sgs~dg-~I~iwd---~~~~~~~~~~~~~~~~~~g~~~~~ 665 (723)
+.. . ...+..+++||+ ++.|+-..-.+ .++--. +........+.. .|.....
T Consensus 200 ~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~-----~G~kg~~ 274 (381)
T 3q6k_A 200 TFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPEL-----LGNRGKY 274 (381)
T ss_dssp GGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEE-----EEECCTT
T ss_pred CCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEE-----eeecCCC
Confidence 110 0 236778888887 66666555443 232222 111111111110 0111100
Q ss_pred cceEEEEEecCCCCEEEEEECCCcEEEEecCC
Q 004924 666 LYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 666 v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~ 697 (723)
......+..+.+|.++++--..+.|..|+...
T Consensus 275 s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 275 NDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp CCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred CCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 11234566533677777777888999999865
No 355
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=80.91 E-value=24 Score=37.59 Aligned_cols=112 Identities=10% Similarity=-0.019 Sum_probs=62.2
Q ss_pred cEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCC-----CCCCCeEEEEEccC---CCEEEE--Ec
Q 004924 521 RITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV-----PETTIVNHIQFHPD---QIHLLS--IH 589 (723)
Q Consensus 521 ~i~~l~~spdg~-~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~-----~~~~~v~~l~~spd---g~~l~~--s~ 589 (723)
....|+|.|||. .++++...|.|++++..... . ...+..+..... ........|+|+|+ ..+|++ +.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~-~-~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEI-F-KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCB-C-SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCe-e-eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 457899999996 56666788999999754321 1 011111111000 00156889999997 234443 32
Q ss_pred --C----------CcEEEEECCC----------CceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCC
Q 004924 590 --E----------GQIDVYEAPT----------LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS 634 (723)
Q Consensus 590 --d----------g~I~vwd~~~----------~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~d 634 (723)
+ ..|.-|.+.. .+.+..+........-..++|.|||.+.++.+..
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 1455566542 1233333221223456789999999876665543
No 356
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=77.12 E-value=1e+02 Score=34.72 Aligned_cols=181 Identities=13% Similarity=0.010 Sum_probs=90.2
Q ss_pred CcEEEEEcCCCc--EEEEEeCCCCCe-EEEEEcCCC-e-----EEEEECC---CcEEEEeCCC--CcEEEEEcCcCCcEE
Q 004924 458 GKISIFSLETFQ--TLATFANPPPIA-TYFILLPQD-L-----FAFGFDD---SSILVHCPCT--KKTKAKLKGHQNRIT 523 (723)
Q Consensus 458 g~I~vwd~~~~~--~~~~~~~~~~~v-~~l~~~p~~-~-----l~sgs~d---g~I~iwd~~~--~~~~~~l~~~~~~i~ 523 (723)
..|+.|.+.+.. -...+.+....+ .....++++ . +++.+.+ ..+++.+... ++. ..+......
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~-- 292 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMPSDA-- 292 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSCTTC--
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecCCcc--
Confidence 468888876642 334455444333 234455666 3 4443322 3566666553 332 223211111
Q ss_pred EEEEcCCCCEEEEE----------eCCCcEEEEeCCCCcee--eceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcC
Q 004924 524 CLAYSLSLNVLVSS----------GADAQLCVWDAVGWKKL--CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE 590 (723)
Q Consensus 524 ~l~~spdg~~l~s~----------s~dg~I~vwd~~~~~~~--~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~d 590 (723)
.+..+.++..++.. ...+.|...|+.++... .......+...... ..+..+.+..+. .+++ ..+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~-l~~~~~~~ 369 (711)
T 4hvt_A 293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTAN--EVFNFISTTKDR-VFLATYDN 369 (711)
T ss_dssp EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTT--EEEEEEEECSSC-EEEEEEET
T ss_pred eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCC--CeEEEEEEECCE-EEEEEEEC
Confidence 12334455544422 24667888888764210 00011111111111 467788888763 4444 455
Q ss_pred C--cEEEEECCCCc-eeEE-ecCCCCCCCeEEEEEeeCCcE-EEEEeC---CCcEEEEECCCCc
Q 004924 591 G--QIDVYEAPTLN-HTSQ-LVPDKMDLPITYATYSCDGKC-IYVSCK---SGHVKVFDTSTLE 646 (723)
Q Consensus 591 g--~I~vwd~~~~~-~~~~-~~~~~h~~~v~~l~~spdg~~-l~sgs~---dg~I~iwd~~~~~ 646 (723)
+ .+.++|+.+++ .... +..+. .+.+.....++++.. +++.+. -+.++.+|.. ++
T Consensus 370 ~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~ 431 (711)
T 4hvt_A 370 VVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HE 431 (711)
T ss_dssp TEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SC
T ss_pred CEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-Cc
Confidence 5 57888876664 2333 32211 345666666777654 444333 3788888887 54
No 357
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=75.04 E-value=64 Score=31.42 Aligned_cols=204 Identities=10% Similarity=0.043 Sum_probs=105.4
Q ss_pred CeEEEEEcCCC-eEEEEECCCcEEEEe---CCCCcEEEEEcCcCCcEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcee
Q 004924 480 IATYFILLPQD-LFAFGFDDSSILVHC---PCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKL 554 (723)
Q Consensus 480 ~v~~l~~~p~~-~l~sgs~dg~I~iwd---~~~~~~~~~l~~~~~~i~~l~~sp-dg~~l~s~s~dg~I~vwd~~~~~~~ 554 (723)
.+..+...... .++.-+.+|.++--. +..+.....+. ....|..+.... +...++..+.+|.++-..+.... .
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~ 102 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-Y 102 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-T
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-h
Confidence 34444333333 555556667655432 22111100132 344566554421 46789999999999988775532 1
Q ss_pred ec--eeeeeeecCCCCCCCCeEEEEEccCCCEEE-EEcCCcEEEEECCCC-------ceeEEecCCCCCCCeEEEEEeeC
Q 004924 555 CS--KFLHSFQTGLVPETTIVNHIQFHPDQIHLL-SIHEGQIDVYEAPTL-------NHTSQLVPDKMDLPITYATYSCD 624 (723)
Q Consensus 555 ~~--~~l~~~~~~~~~~~~~v~~l~~spdg~~l~-~s~dg~I~vwd~~~~-------~~~~~~~~~~h~~~v~~l~~spd 624 (723)
.. .....+..+ ..+..+........++ .+..|.+..++...- +-+.-+.. .....|..+...++
T Consensus 103 ~~~G~~~i~lkeg-----D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L-~~~d~vv~~~~~~~ 176 (276)
T 3no0_A 103 KAQGMPIIKLTEG-----DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKL-EKNDETSGLRIWNG 176 (276)
T ss_dssp CSTTEECSCCCTT-----CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC-CTTCCEEEEEEESS
T ss_pred hcCCeEEEecCCC-----CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEcc-CCCCEEEEEEEeCC
Confidence 11 111112222 4566666655554555 488898888875321 11111221 12466777766666
Q ss_pred CcEEEEEeCCCcEEEEECCCCcEEEEee-cccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEE--EecCC
Q 004924 625 GKCIYVSCKSGHVKVFDTSTLELRCQIN-LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV--IEPLE 697 (723)
Q Consensus 625 g~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~i--Wd~~~ 697 (723)
+.+++..+..|.++...+..-....+-. +..... ..+.+ ..+.... +...++..+.+|.+.. +++..
T Consensus 177 ~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~---~~~~l--v~~~~~~-~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 177 EPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSG---TKDTL--VDLIPIK-EEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp CSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCC---SSSCE--EEEEEES-SEEEEEEEETTSCEEEEEEEGGG
T ss_pred CCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEc---CCCcE--EEEEEeC-CCCEEEEEcCCCeEEEeeeCHHH
Confidence 7788899999999888765322111100 000000 12222 2332222 3456777888888887 77654
No 358
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=74.24 E-value=2.8 Score=32.51 Aligned_cols=43 Identities=21% Similarity=0.290 Sum_probs=34.8
Q ss_pred chHHHHHHHHhcCCCcccchHHHHHHHHHHhhhhhhHHHHHHHhhhcccc
Q 004924 109 NSALSSLIKLICPSFEKETKEELIYLIHQFLNEEEFKETLHKLEQETRVF 158 (723)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~evirlI~q~L~e~G~~~s~~~L~~Es~i~ 158 (723)
|++++.+++. .+=.-+.-||-.||+-+||+.|+..++.|+|..
T Consensus 6 N~~~k~~~~s-------~~GrLi~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 6 NESLKKFLNT-------KDGRLVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp CHHHHHHHTS-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred cHHHHHHHcC-------cccHHHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 4555666655 344558899999999999999999999999985
No 359
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=74.06 E-value=12 Score=43.92 Aligned_cols=42 Identities=19% Similarity=0.112 Sum_probs=35.8
Q ss_pred CCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecc
Q 004924 613 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLT 654 (723)
Q Consensus 613 ~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 654 (723)
...+.+++..++..++++-+.|+++|+|++.+++++.+....
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 345677788888999999999999999999999998887643
No 360
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=71.09 E-value=89 Score=31.30 Aligned_cols=150 Identities=10% Similarity=0.032 Sum_probs=84.8
Q ss_pred CC-eEEEEECCCcEEEEeCCCC-------cEEEEEcCcCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC--CC----cee
Q 004924 489 QD-LFAFGFDDSSILVHCPCTK-------KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV--GW----KKL 554 (723)
Q Consensus 489 ~~-~l~sgs~dg~I~iwd~~~~-------~~~~~l~~~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~--~~----~~~ 554 (723)
+. .++..+.+|.|+-..+..- .....++. ...+..+........++..+..|.+..+... .- ...
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a 186 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRAT 186 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTS
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCC
Confidence 35 8899999999998875432 11122332 3345445444455678888899998888776 31 110
Q ss_pred eceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCcEEEEECCCC-------ceeEEecCCCCCCCeEEEEEeeCCc
Q 004924 555 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-------NHTSQLVPDKMDLPITYATYSCDGK 626 (723)
Q Consensus 555 ~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~I~vwd~~~~-------~~~~~~~~~~h~~~v~~l~~spdg~ 626 (723)
.......+..+ ..|.++...+++.+++. +..|.++.-.+... +-+..+........+..+....+..
T Consensus 187 ~Gv~~i~L~~~-----d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~ 261 (327)
T 3uc1_A 187 SGVQGMRFNID-----DRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDS 261 (327)
T ss_dssp BCEESSCCCTT-----CCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTC
T ss_pred CCeeeecCCCC-----CEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCc
Confidence 11111112222 56777766655555555 78888888775422 2222222211134455555544555
Q ss_pred EEEEEeCCCcEEEEECCC
Q 004924 627 CIYVSCKSGHVKVFDTST 644 (723)
Q Consensus 627 ~l~sgs~dg~I~iwd~~~ 644 (723)
.++..+.+|.+.-++...
T Consensus 262 ~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 262 ELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEEEGGGCEEEEEGGG
T ss_pred cEEEEcCCCeEEEEehhh
Confidence 677777778777776654
No 361
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=69.81 E-value=1e+02 Score=31.46 Aligned_cols=206 Identities=9% Similarity=-0.011 Sum_probs=91.6
Q ss_pred eEEEEECCCcEEEEeCCC-CcEEEEE--cCcCCcEEEEEEcC-CCCEEEEEeCCC----cEEEEeCCCCceeeceeeee-
Q 004924 491 LFAFGFDDSSILVHCPCT-KKTKAKL--KGHQNRITCLAYSL-SLNVLVSSGADA----QLCVWDAVGWKKLCSKFLHS- 561 (723)
Q Consensus 491 ~l~sgs~dg~I~iwd~~~-~~~~~~l--~~~~~~i~~l~~sp-dg~~l~s~s~dg----~I~vwd~~~~~~~~~~~l~~- 561 (723)
.|.+|+..| +.+++... +..-... ......|.++.++| +...+.+++..| .|...+ +.|.. ...+..
T Consensus 24 ~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~t--W~~~~~~ 99 (394)
T 3b7f_A 24 MLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGN--WTEATRP 99 (394)
T ss_dssp EEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSC--CEECSBC
T ss_pred EEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCC--ceECCcc
Confidence 777788777 55554332 3222221 12345799999998 333444454444 343332 22211 111110
Q ss_pred --eecCCCC----CCCCeEEEEEcc---CCCEEEEEcCCcEEEEECCCCceeEEecC-----------------CCCCCC
Q 004924 562 --FQTGLVP----ETTIVNHIQFHP---DQIHLLSIHEGQIDVYEAPTLNHTSQLVP-----------------DKMDLP 615 (723)
Q Consensus 562 --~~~~~~~----~~~~v~~l~~sp---dg~~l~~s~dg~I~vwd~~~~~~~~~~~~-----------------~~h~~~ 615 (723)
+...... ....|.++++.| .+...+.+..+.|...+= .++.-..+.. ......
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~ 178 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPK 178 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCc
Confidence 0100000 002577899986 344444455666554432 2332222211 011345
Q ss_pred eEEEEEeeC-CcEEEEEeCCCcEEEEECCCCcEEEEeec---ccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEE
Q 004924 616 ITYATYSCD-GKCIYVSCKSGHVKVFDTSTLELRCQINL---TAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVH 691 (723)
Q Consensus 616 v~~l~~spd-g~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~ 691 (723)
+.++.++|. ...|+.+..++.|+..+- .|+--..+.. ..+.+.........+.+++++|.++..|..++..+
T Consensus 179 i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g--- 254 (394)
T 3b7f_A 179 MHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG--- 254 (394)
T ss_dssp EEEEEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE---
T ss_pred eeEEEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe---
Confidence 788999873 445555554554544322 2221122110 00011000000112448889985556777776554
Q ss_pred EEecCCCceeeecC
Q 004924 692 VIEPLESEVEWGKL 705 (723)
Q Consensus 692 iWd~~~~~~~w~~~ 705 (723)
||....+...|...
T Consensus 255 l~~s~D~G~tW~~~ 268 (394)
T 3b7f_A 255 IYRMDRREGVWKRI 268 (394)
T ss_dssp EEEEETTTTEEECG
T ss_pred EEEeCCCCCcceEC
Confidence 44444444556553
No 362
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=69.62 E-value=51 Score=34.95 Aligned_cols=111 Identities=8% Similarity=-0.062 Sum_probs=61.4
Q ss_pred CCeEEEEEccCCC--EEEEEcCCcEEEEECCCC---ceeEEecC---C----CCCCCeEEEEEeeC----CcEEEEEeC-
Q 004924 571 TIVNHIQFHPDQI--HLLSIHEGQIDVYEAPTL---NHTSQLVP---D----KMDLPITYATYSCD----GKCIYVSCK- 633 (723)
Q Consensus 571 ~~v~~l~~spdg~--~l~~s~dg~I~vwd~~~~---~~~~~~~~---~----~h~~~v~~l~~spd----g~~l~sgs~- 633 (723)
...+.|+|.|+|. ++++-..|.|++++.... ..+..+.. . ........++|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4577999999995 777778899999975422 12222211 0 01356789999996 433333222
Q ss_pred -C----------CcEEEEECCCC--------cEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEECCC
Q 004924 634 -S----------GHVKVFDTSTL--------ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 688 (723)
Q Consensus 634 -d----------g~I~iwd~~~~--------~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg 688 (723)
+ ..|.-|.+..+ .....+... ...++| ... .++|.| ||.+.++.++.+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~--~~~~~H--~g~--~l~fgp-DG~LYv~~Gd~~ 160 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVA--ELHRKH--LGG--QLLFGP-DGFLYIILGDGM 160 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEE--ESSSSS--CEE--EEEECT-TSCEEEEECCTT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcC--CCCCcc--cCC--cEeECC-CCcEEEEeCCCC
Confidence 1 13444665421 111112111 111222 223 899999 888877777644
No 363
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=68.68 E-value=2.3 Score=29.15 Aligned_cols=17 Identities=41% Similarity=0.847 Sum_probs=15.2
Q ss_pred cchHHHHHHHHhcCCCc
Q 004924 108 NNSALSSLIKLICPSFE 124 (723)
Q Consensus 108 ~~~~~~~~~~~~~~~~~ 124 (723)
++.|||-||+.|||+++
T Consensus 37 en~rlr~l~kqmcpsld 53 (63)
T 2c9l_Y 37 ENDRLRLLLKQMCPSLD 53 (63)
T ss_dssp HHHHHHHHHHHHCTTCC
T ss_pred cchHHHHHHHHhCCccc
Confidence 56899999999999985
No 364
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=68.06 E-value=54 Score=38.44 Aligned_cols=40 Identities=28% Similarity=0.206 Sum_probs=33.2
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeceee
Q 004924 520 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 559 (723)
Q Consensus 520 ~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l 559 (723)
..+.+++..++..++++-+.|+++|+|++.++.+.....+
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 4577888888889999999999999999999876655443
No 365
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=52.15 E-value=1.9e+02 Score=28.79 Aligned_cols=163 Identities=11% Similarity=0.020 Sum_probs=90.0
Q ss_pred CcEEEEE-EcC--CCCEEEEEeCCCcEEEEeCCCCceeec--eeeeeeecCCCCCCCCeEEEEEccCCCEEE-EEcCCcE
Q 004924 520 NRITCLA-YSL--SLNVLVSSGADAQLCVWDAVGWKKLCS--KFLHSFQTGLVPETTIVNHIQFHPDQIHLL-SIHEGQI 593 (723)
Q Consensus 520 ~~i~~l~-~sp--dg~~l~s~s~dg~I~vwd~~~~~~~~~--~~l~~~~~~~~~~~~~v~~l~~spdg~~l~-~s~dg~I 593 (723)
..|..+. ... +...++.++.+|.++-..+........ .....+..+ ..+..+........++ .+..|.+
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~-----D~lv~~~~~~~~d~ill~T~~G~~ 169 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN-----DELVGAVLCSAGDDLLLVSANGQS 169 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT-----CCEEEEEEECTTCEEEEEETTSEE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC-----CEEEEEEEecCCCEEEEEECCCeE
Confidence 4455543 332 577999999999999887655221111 111112222 4565555544444444 4888988
Q ss_pred EEEECC--CCce-------eEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcE-------EEEeeccccc
Q 004924 594 DVYEAP--TLNH-------TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL-------RCQINLTAYA 657 (723)
Q Consensus 594 ~vwd~~--~~~~-------~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~-------~~~~~~~~~~ 657 (723)
..+... .-.. +.-+.. .....|.++...+++.+++..+..|.++.-.+..... +..+..
T Consensus 170 ~rf~~~~~eip~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l---- 244 (327)
T 3uc1_A 170 IRFSATDEALRPMGRATSGVQGMRF-NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMY---- 244 (327)
T ss_dssp EEEECCTTTSCCCCTTSBCEESSCC-CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCC----
T ss_pred EEEECcccccCcCCcCCCCeeeecC-CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEe----
Confidence 888765 2111 111111 1255677777766777899999999998877543222 111111
Q ss_pred CCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCC
Q 004924 658 QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 658 ~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~ 697 (723)
....+. +..+.... +...++..+.+|.+.-+....
T Consensus 245 --~~~~d~--lv~~~~~~-~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 245 --DRRRGR--LVGALIVD-DDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp --CTTTCS--EEEEEEEC-TTCEEEEEEGGGCEEEEEGGG
T ss_pred --cCCCCe--EEEEEEeC-CCccEEEEcCCCeEEEEehhh
Confidence 000111 22333333 345677778888877776643
No 366
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=50.72 E-value=2.1e+02 Score=28.92 Aligned_cols=245 Identities=9% Similarity=0.023 Sum_probs=113.4
Q ss_pred CCEEEEEeCCcEEEEEcCC-CcEEEEE--eCCCCCeEEEEEcC--CCeEEEEECCC----cEEEEeCCCCcEEEEEcC--
Q 004924 449 GSHLFSASGGKISIFSLET-FQTLATF--ANPPPIATYFILLP--QDLFAFGFDDS----SILVHCPCTKKTKAKLKG-- 517 (723)
Q Consensus 449 ~~~l~s~sdg~I~vwd~~~-~~~~~~~--~~~~~~v~~l~~~p--~~~l~sgs~dg----~I~iwd~~~~~~~~~l~~-- 517 (723)
...|..|...-+.+++... +.....+ ......|.++++.| .+.+.+++..| .|...+ +.|+.-..+..
T Consensus 22 ~g~l~vgt~~Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 22 PVMLLVATIKGAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPP 100 (394)
T ss_dssp CCEEEEEETTEEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCC
T ss_pred CCEEEEEecCceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccc
Confidence 3456666633355555432 2222221 13345789999998 34555555554 444432 33332222211
Q ss_pred ------------cCCcEEEEEEcC-C-CCEEEEEeCCCcEEEEeCCCCceeeceeeeeeec-CC-----------CCCCC
Q 004924 518 ------------HQNRITCLAYSL-S-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT-GL-----------VPETT 571 (723)
Q Consensus 518 ------------~~~~i~~l~~sp-d-g~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~-~~-----------~~~~~ 571 (723)
....|.++++.| + ...+..++..+.|...+-. |.. ...+..... .. .....
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~t--W~~~~~~~~~p~~~~~~~~~~~g~~~~~ 177 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GAS--WEPVAGFNDHPMRRAWTGGEQDGTPDGP 177 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSB--CEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCC--eEECcCccCCccccccccccccCCCCCC
Confidence 112577888987 2 4556666656665544322 211 111110000 00 00013
Q ss_pred CeEEEEEccC--CCEEEEEcCCcEEEEECCCCceeEEecCCC---C--------CCCeEEEEEeeC-CcEEEEEeCCCcE
Q 004924 572 IVNHIQFHPD--QIHLLSIHEGQIDVYEAPTLNHTSQLVPDK---M--------DLPITYATYSCD-GKCIYVSCKSGHV 637 (723)
Q Consensus 572 ~v~~l~~spd--g~~l~~s~dg~I~vwd~~~~~~~~~~~~~~---h--------~~~v~~l~~spd-g~~l~sgs~dg~I 637 (723)
.+.++.++|. +...+.+.++.|...+ ..++.-..+.... + ...+.++.++|+ ...|+++...+ |
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l 255 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-I 255 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-E
T ss_pred ceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-E
Confidence 5789999873 3344444444444432 2233222221100 0 134889999885 45666666544 4
Q ss_pred EEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEEEEEC-----------CCcEEEEecCCCceeeecC
Q 004924 638 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT-----------NGRVHVIEPLESEVEWGKL 705 (723)
Q Consensus 638 ~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~-----------Dg~v~iWd~~~~~~~w~~~ 705 (723)
+..+- .++.-..+.. ..+.+ ....+.+++.+|.+...+..++. ++...||.-..+...|...
T Consensus 256 ~~s~D-~G~tW~~~~~--~l~~~---~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~ 328 (394)
T 3b7f_A 256 YRMDR-REGVWKRIGD--AMPRE---VGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQ 328 (394)
T ss_dssp EEEET-TTTEEECGGG--GSCTT---TCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEE
T ss_pred EEeCC-CCCcceECCC--CCCCC---CccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceEC
Confidence 44432 2332222211 01110 00123478887744454544432 3446778777766677753
No 367
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=48.07 E-value=3e+02 Score=29.82 Aligned_cols=133 Identities=13% Similarity=0.011 Sum_probs=79.4
Q ss_pred CCeEEEEEccCCCEEEEEcCCcEEEEECCCCceeEEecCCCC-CCCeEEEEEeeCCcEEEEEeC--------------CC
Q 004924 571 TIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKM-DLPITYATYSCDGKCIYVSCK--------------SG 635 (723)
Q Consensus 571 ~~v~~l~~spdg~~l~~s~dg~I~vwd~~~~~~~~~~~~~~h-~~~v~~l~~spdg~~l~sgs~--------------dg 635 (723)
+.+....-.++|.++.. ....+...|. .++.+..+..... ...-..+...|+|+.|+.+.. +.
T Consensus 207 g~l~~~~g~~nG~l~~g-~G~~i~elD~-~Gkvv~~~~lp~g~~~~HHD~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD 284 (571)
T 3elq_A 207 GYLMGIRETPRGTFTAV-QGQHWYEFDM-MGQVLEDHKLPRGFADATHESIETPNGTVLLRVGKSNYRRDDGVHVTTIRD 284 (571)
T ss_dssp SCCEEEEECTTSCEEEE-EBTEEEEECT-TCCEEEEEECCTTEECBCSCEEECTTSCEEEEEEETTEECTTSCEECCCSC
T ss_pred CeEEEEEecCCCCEEEe-cCcEEEEECC-CCcEEEEEECCCCccccccceEEcCCCcEEEEEecccccCCCCcccceecc
Confidence 34555555677876664 2245777787 5666665543211 011124566788888875531 34
Q ss_pred cEEEEECCCCcEEEEeecccccC-----------------------CC------------------CccCccceEEEEEe
Q 004924 636 HVKVFDTSTLELRCQINLTAYAQ-----------------------PG------------------TISLELYPLVIAAH 674 (723)
Q Consensus 636 ~I~iwd~~~~~~~~~~~~~~~~~-----------------------~g------------------~~~~~v~~~~v~~s 674 (723)
.|...| .+|+.+..+.....+. .| ...+...+.++.+.
T Consensus 285 ~I~EVD-~tGeVv~eW~~~dhld~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~g~~~g~~~~~Dw~HiNsv~~d 363 (571)
T 3elq_A 285 HILEVD-KSGRVVDVWDLTKILDPKRDALLGALDAGAVCVNVDLAHAGQQAKLEPDTPFGDALGVGPGRNWAHVNSIAYD 363 (571)
T ss_dssp EEEEEC-TTSCEEEEEEHHHHSCTTCCTTGGGSBTTC-------CCCSCBCCCCTTCCSSSSSCSSTTSCSCCEEEEEEE
T ss_pred EEEEEC-CCCCEEEEEEhHHccCcccccchhccccccccccccccccccccccccccccccccccCCCCCCcEecceeEc
Confidence 677788 8898888776322110 00 01233447799998
Q ss_pred cCCCCEEEEEECCCcEEEEecCCCceeeecCCCC
Q 004924 675 PLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFT 708 (723)
Q Consensus 675 p~d~~~las~s~Dg~v~iWd~~~~~~~w~~~~~~ 708 (723)
+.++++|+|+-.- .|..-+. +++-.|...+..
T Consensus 364 ~~dd~~liSsR~~-~I~~Id~-tG~V~W~LGg~~ 395 (571)
T 3elq_A 364 AKDDSIILSSRHQ-GVVKIGR-DKQVKWILAPSK 395 (571)
T ss_dssp TTTTEEEEEETTT-EEEEEET-TSCEEEEESCST
T ss_pred CCCCEEEEECCcc-EEEEEcC-CCcEEEEECCCC
Confidence 8455677777655 6666675 788889886643
No 368
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=45.08 E-value=25 Score=28.41 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=35.5
Q ss_pred cccCCCcccchHHHHHHHHhcCCC--cccchHHHHHHHHHHhhhhhhH
Q 004924 100 DKLIFPCVNNSALSSLIKLICPSF--EKETKEELIYLIHQFLNEEEFK 145 (723)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~evirlI~q~L~e~G~~ 145 (723)
-+..|+..-+..|.+++.. ++.- .+..|.||+..|++|-++++++
T Consensus 8 ~~~~~~~w~S~eLa~fl~~-iG~~~~~~~sR~eVvk~lW~YIK~nnLQ 54 (101)
T 1v32_A 8 KRFEFVGWGSRQLIEFLHS-LGKDTSEMISRYDVSDTIAKYISKEGLL 54 (101)
T ss_dssp SCCSSSSSSCHHHHHHHHH-HTCCCSSCCCHHHHHHHHHHHHHHHTCB
T ss_pred CcceecccCCHHHHHHHHH-cCCCCccccCHHHHHHHHHHHHHhhcCc
Confidence 4566777778889999876 5542 4578999999999999999954
No 369
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=44.98 E-value=66 Score=35.98 Aligned_cols=32 Identities=16% Similarity=0.341 Sum_probs=28.4
Q ss_pred eeCCcEEEEEeCCCcEEEEECCCCcEEEEeec
Q 004924 622 SCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 653 (723)
Q Consensus 622 spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 653 (723)
..+..++++-+.|.++|+|++++++++.....
T Consensus 228 ~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 228 LFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34678999999999999999999999888776
No 370
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=42.73 E-value=75 Score=34.52 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=43.9
Q ss_pred CCeEEEEEccCCCEEEEE--c-----------CCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeC
Q 004924 571 TIVNHIQFHPDQIHLLSI--H-----------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 633 (723)
Q Consensus 571 ~~v~~l~~spdg~~l~~s--~-----------dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~ 633 (723)
.....|+|.++|.+.++. . ...+..++..+++....+.. .....++.++||||++.|+++-.
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~-P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC-CCCccccCCEECCCCCEEEEEEe
Confidence 467789999999877732 1 12577777777876554432 22567899999999998887643
No 371
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=42.05 E-value=70 Score=35.04 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=42.5
Q ss_pred CeEEEEEccCCCEEEEE--c-----------CCcEEEEECCCCceeEEecCCCCCCCeEEEEEeeCCcEEEEEe
Q 004924 572 IVNHIQFHPDQIHLLSI--H-----------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 632 (723)
Q Consensus 572 ~v~~l~~spdg~~l~~s--~-----------dg~I~vwd~~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs 632 (723)
..-.|+|+|.|.++++- . +..+.+.+..+++...-+.. .....++.++|+||++.|++.-
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~-P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECTTSSEEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC-CCCccCcCeeECCCCCEEEEEE
Confidence 45679999999866652 1 12356667777776555544 3478899999999999887763
No 372
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=37.67 E-value=30 Score=20.03 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=20.3
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhccc.
Q 004924 72 SGYTNATSSRAKLIDSLKLLVKENRI. 97 (723)
Q Consensus 72 ~~~~~~~~~r~~~~~~~~~~~~~~~~. 97 (723)
|+|. +..++..+++|.|++++.|.+
T Consensus 1 skyI-p~IAe~M~~~~Vk~fvR~~gi. 25 (25)
T 3ewt_E 1 SKYI-TTIAGVMTLSQVKGFVRKNGVx 26 (26)
T ss_pred CCch-hHHHHHHhHHHHHHHHHHcCC.
Confidence 4664 678899999999999998864
No 373
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=33.88 E-value=65 Score=31.17 Aligned_cols=55 Identities=15% Similarity=0.243 Sum_probs=36.1
Q ss_pred HHHHhhhhhhHHHHHHHhhhccccc-c----chhhHHhhhcCChHHHHHHHhhccccccC
Q 004924 135 IHQFLNEEEFKETLHKLEQETRVFF-D----INYFREYITSGEWDNAEKYLSAFTNMNDN 189 (723)
Q Consensus 135 I~q~L~e~G~~~s~~~L~~Es~i~~-~----~~~l~~~i~~G~w~~~~~~l~~l~~~~~~ 189 (723)
+.+.|++--+..+...++.+-+-.- | ...|+=.-..|+|+.|++.|+....+++.
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 3456777777777777776654433 2 33344445899999999999877444443
No 374
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=33.01 E-value=2.5e+02 Score=33.57 Aligned_cols=37 Identities=14% Similarity=0.056 Sum_probs=29.9
Q ss_pred CeEEEEEcCCC-eEEEEECCCcEEEEeCCCCcEEEEEc
Q 004924 480 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK 516 (723)
Q Consensus 480 ~v~~l~~~p~~-~l~sgs~dg~I~iwd~~~~~~~~~l~ 516 (723)
.+.+++..++. .+++-+.|+++++|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34455666777 88999999999999999999987653
No 375
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=32.23 E-value=3.5e+02 Score=26.02 Aligned_cols=186 Identities=6% Similarity=-0.011 Sum_probs=99.1
Q ss_pred CCEEEEEeCCcEEE---EEcCCCcEEEEEeCCCCCeEEEEEcC-CC-eEEEEECCCcEEEEeCCCCc------EEEEEcC
Q 004924 449 GSHLFSASGGKISI---FSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKK------TKAKLKG 517 (723)
Q Consensus 449 ~~~l~s~sdg~I~v---wd~~~~~~~~~~~~~~~~v~~l~~~p-~~-~l~sgs~dg~I~iwd~~~~~------~~~~l~~ 517 (723)
...++..+.|.++- |++..+.... +-.....|..+.... +. .++..+.+|.++-..+..-. ....++.
T Consensus 36 ~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke 114 (276)
T 3no0_A 36 EGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE 114 (276)
T ss_dssp SCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT
T ss_pred CEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC
Confidence 34444444776654 4443221111 222345566654421 35 88899999999988765421 1112222
Q ss_pred cCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee----eceeeeeeecCCCCCCCCeEEEEEccCCCEEEE-EcCCc
Q 004924 518 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL----CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ 592 (723)
Q Consensus 518 ~~~~i~~l~~spdg~~l~s~s~dg~I~vwd~~~~~~~----~~~~l~~~~~~~~~~~~~v~~l~~spdg~~l~~-s~dg~ 592 (723)
...+..+........++..+..|.+..++...-... .......+..+ ..|..+...+++..++. +..|.
T Consensus 115 -gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~-----d~vv~~~~~~~~~~ll~~T~~G~ 188 (276)
T 3no0_A 115 -GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKN-----DETSGLRIWNGEPYLLVITAKGR 188 (276)
T ss_dssp -TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT-----CCEEEEEEESSCSEEEEEETTSC
T ss_pred -CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCC-----CEEEEEEEeCCCCEEEEEeCCCc
Confidence 234555555555667888899999887765431110 11111112222 45666655555555554 78888
Q ss_pred EEEEECCC-------CceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEE--EECCC
Q 004924 593 IDVYEAPT-------LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV--FDTST 644 (723)
Q Consensus 593 I~vwd~~~-------~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~i--wd~~~ 644 (723)
++...+.. ++-+..+ . ....+..+....+...++..+.+|.+.. ++...
T Consensus 189 ~kr~~~~e~~~~~R~gkGv~~i-~--~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 189 VKKISHEEIPKTNRGVKGTEVS-G--TKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEEGGGSCCCCTTCCCEECC-C--SSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEeEHHHcccCCCCCcceEEE-c--CCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 88887642 2222223 1 1445555544334456666777777766 66543
No 376
>3gio_A Putative uncharacterized protein; antiparallel beta sheet, four-helix bundle, loop, DNA binding protein; 2.40A {Helicobacter pylori}
Probab=30.59 E-value=25 Score=30.07 Aligned_cols=73 Identities=14% Similarity=0.206 Sum_probs=48.1
Q ss_pred cccchhhHHHHHHHhccccccccccccCCCCchhhHHHHHHHHHHHHHhccccccccCCCcccchHHHHHHHHhcCCCcc
Q 004924 46 SVSQNRIDCELAELLALKDLRENEQLSGYTNATSSRAKLIDSLKLLVKENRILQDKLIFPCVNNSALSSLIKLICPSFEK 125 (723)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (723)
-|+..++|.+|||-|. +-+..-.+|..|.++.-.- +|- =+..-.+++.+|.+++..| ++
T Consensus 97 k~~d~eiF~qiTQaIa-aSl~~~~qLGeYINPNN~E---------------VFm-LvRv~gy~~~~L~~~L~~i--sL-- 155 (186)
T 3gio_A 97 QKITNEMFIQMTQPIY-DSLMNVDRLGIYINPNNEE---------------VFA-LVRARGFDKDALSEGLHKM--SL-- 155 (186)
T ss_dssp SCCCHHHHHHHHHHHH-HHEEEEEEEEEEEETTTTE---------------EEE-EEEEEEECHHHHHHHHHTT--TC--
T ss_pred ccccHHHHHHHHHHHH-HHHHhHHHhhceeCCCCce---------------eEE-EEEeccCCHHHHHHHHHHh--hc--
Confidence 5788999999999994 2333447889997654321 111 1223356788999999985 54
Q ss_pred cchHHHHHHHHHHhhh
Q 004924 126 ETKEELIYLIHQFLNE 141 (723)
Q Consensus 126 ~~~~evirlI~q~L~e 141 (723)
..+.+++|++-.++
T Consensus 156 --d~~tv~~i~~~V~~ 169 (186)
T 3gio_A 156 --DNQAVSILVAKVEE 169 (186)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHH
Confidence 35677777776543
No 377
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=30.00 E-value=2.1e+02 Score=31.12 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=41.9
Q ss_pred CCeEEEEEcCCC-eEE-EEEC-----------CCcEEEEeCCCCcEEEEEcCc-CCcEEEEEEcCCCCEEEEEe
Q 004924 479 PIATYFILLPQD-LFA-FGFD-----------DSSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSG 538 (723)
Q Consensus 479 ~~v~~l~~~p~~-~l~-sgs~-----------dg~I~iwd~~~~~~~~~l~~~-~~~i~~l~~spdg~~l~s~s 538 (723)
.....+.|.++| +.+ +=.. ...|..++..+|+....+.+. ...++.++|+||++.|.++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 345789999999 333 3211 126777888888877666543 35789999999999877654
No 378
>2bp3_S Platelet glycoprotein IB alpha chain; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens}
Probab=29.94 E-value=20 Score=20.06 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=10.1
Q ss_pred ccccchhhccCCCceeEEEeee
Q 004924 3 FQSVFPMLLEQPSHGVLFLFPY 24 (723)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ 24 (723)
||..+|.. ..-|||||-
T Consensus 1 lqgslptf-----rsslflwvr 17 (26)
T 2bp3_S 1 LRGSLPTF-----RSSLFLWVR 17 (26)
T ss_pred CCccccch-----hheEEEEEc
Confidence 34455543 245899984
No 379
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=29.71 E-value=5.6e+02 Score=27.64 Aligned_cols=136 Identities=11% Similarity=0.021 Sum_probs=67.2
Q ss_pred EEEEEcCCCcEEEEEeCC--CCC---------------eEEEEEcC-CC-eEEEEE---CCCcEEEEeCCCCcEEEEEcC
Q 004924 460 ISIFSLETFQTLATFANP--PPI---------------ATYFILLP-QD-LFAFGF---DDSSILVHCPCTKKTKAKLKG 517 (723)
Q Consensus 460 I~vwd~~~~~~~~~~~~~--~~~---------------v~~l~~~p-~~-~l~sgs---~dg~I~iwd~~~~~~~~~l~~ 517 (723)
+.++|-.+|+.+.+..-. ... ..++++.. +. .++.+- ....|..||.+.++....+..
T Consensus 231 L~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~ 310 (591)
T 2zux_A 231 LTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTL 310 (591)
T ss_dssp EEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEE
T ss_pred EEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEe
Confidence 788888888888776521 111 12333321 11 333332 123588899887766544421
Q ss_pred cC-------------CcEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCC-
Q 004924 518 HQ-------------NRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ- 582 (723)
Q Consensus 518 ~~-------------~~i~~l~~spdg~-~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg- 582 (723)
.. ..+.-..+.-||+ .|+.|+. ++|-.. ..+.+...+|. ..+....|.|+.
T Consensus 311 d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~-----~iD~dG------~~L~st~~gHG---Da~hv~dldP~r~ 376 (591)
T 2zux_A 311 DSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSM-----AVDHDG------KGMYSTGLGHG---DALHTGDLDPGRP 376 (591)
T ss_dssp ETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTE-----EECTTS------CEEEECSCCCC---SCEEEECCCTTSS
T ss_pred cCCCCCcccccccCCCCCeeEeCCCCCCceEEEeee-----EECCCC------CEeeeCCCCCC---CeeEEeecCCCCC
Confidence 11 1233333444553 2433331 233221 12222333564 556666777763
Q ss_pred -CEEEEE-cC----CcEEEEECCCCceeEEecC
Q 004924 583 -IHLLSI-HE----GQIDVYEAPTLNHTSQLVP 609 (723)
Q Consensus 583 -~~l~~s-~d----g~I~vwd~~~~~~~~~~~~ 609 (723)
..++.+ .+ ....+.|..+|+.+.....
T Consensus 377 GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~~ 409 (591)
T 2zux_A 377 GLEVFQVHEDKNAKYGLSFRDAATGKILWGVYA 409 (591)
T ss_dssp SCEEEEECCCTTSSCSEEEEETTTCCEEEEECC
T ss_pred CcEEEEEecCCCCCCccEEEECCCCcEEEEcCC
Confidence 455544 22 1455678888887766543
No 380
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=29.16 E-value=6.4e+02 Score=28.10 Aligned_cols=191 Identities=8% Similarity=-0.073 Sum_probs=95.8
Q ss_pred EcCCC-e-EEEEECCC----cEEEEeCCCCcEEE-EEcC-cCC------cEEEEEEcCCCCEEEEEeC-----------C
Q 004924 486 LLPQD-L-FAFGFDDS----SILVHCPCTKKTKA-KLKG-HQN------RITCLAYSLSLNVLVSSGA-----------D 540 (723)
Q Consensus 486 ~~p~~-~-l~sgs~dg----~I~iwd~~~~~~~~-~l~~-~~~------~i~~l~~spdg~~l~s~s~-----------d 540 (723)
++|++ + +++-|..| .++++|+.+++.+. .+.. -.+ ....++|..+. .+..++. .
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~-~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKD-TIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETT-EEEECCCCSTTCBCTTSSB
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCC-EEEEEeCCCCCCcCcCCCC
Confidence 67888 3 44444444 79999999987652 1110 000 11334776333 3433321 2
Q ss_pred CcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCE-----EEE-E---cCCcEEEEECCC--CceeEEecC
Q 004924 541 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH-----LLS-I---HEGQIDVYEAPT--LNHTSQLVP 609 (723)
Q Consensus 541 g~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~-----l~~-s---~dg~I~vwd~~~--~~~~~~~~~ 609 (723)
..++.|.+-+..... .. +..+... ..-.+...++++++ +++ + ....+++.|... ++. ..+..
T Consensus 216 ~~v~~~~~Gt~~~~~-~~---v~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ 288 (711)
T 4hvt_A 216 NSLYIWKRGESIEKA-KK---LFEVPKE--YIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINM 288 (711)
T ss_dssp CEEEEEETTSCGGGC-EE---EEECCTT--SCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCS
T ss_pred CEEEEEECCCChHHC-eE---EeccCCC--ceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeec
Confidence 457777775532111 11 2222221 22334556777663 333 3 124567777653 432 23322
Q ss_pred CCCCCCeEEEEEeeCCcEEEEE----------eCCCcEEEEECCCCc-------EEEE-eecccccCCCCccCccceEEE
Q 004924 610 DKMDLPITYATYSCDGKCIYVS----------CKSGHVKVFDTSTLE-------LRCQ-INLTAYAQPGTISLELYPLVI 671 (723)
Q Consensus 610 ~~h~~~v~~l~~spdg~~l~sg----------s~dg~I~iwd~~~~~-------~~~~-~~~~~~~~~g~~~~~v~~~~v 671 (723)
+. .. .+..+.++.+++.. ...+.|...++.++. .... +.. .....+..+
T Consensus 289 ~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~ 355 (711)
T 4hvt_A 289 PS-DA---TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTP---------TANEVFNFI 355 (711)
T ss_dssp CT-TC---EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECC---------CTTEEEEEE
T ss_pred CC-cc---eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECC---------CCCCeEEEE
Confidence 11 11 23445666665533 135778888877642 1111 221 222334588
Q ss_pred EEecCCCCEEEEEECCCc--EEEEecCCCc
Q 004924 672 AAHPLEPNRIALGLTNGR--VHVIEPLESE 699 (723)
Q Consensus 672 ~~sp~d~~~las~s~Dg~--v~iWd~~~~~ 699 (723)
.|.. + .++++...++. |.++++.+++
T Consensus 356 ~~~~-~-~l~~~~~~~~~~~l~~~~~~~g~ 383 (711)
T 4hvt_A 356 STTK-D-RVFLATYDNVVAKVVTFTLENEQ 383 (711)
T ss_dssp EECS-S-CEEEEEEETTEEEEEEECEETTE
T ss_pred EEEC-C-EEEEEEEECCEEEEEEEECCCCc
Confidence 8887 3 67888888874 6677776653
No 381
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=27.58 E-value=83 Score=35.18 Aligned_cols=37 Identities=19% Similarity=0.386 Sum_probs=30.3
Q ss_pred CCeEEEEEeCCEEEEEe-CCcEEEEEcCCCcEEEEEeC
Q 004924 440 DSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFAN 476 (723)
Q Consensus 440 ~~V~~v~~s~~~l~s~s-dg~I~vwd~~~~~~~~~~~~ 476 (723)
..|.++.+...++++-+ |.++|+|++.+++++.+..-
T Consensus 222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 45666666678988888 99999999999998887654
No 382
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=26.81 E-value=43 Score=40.20 Aligned_cols=40 Identities=20% Similarity=0.149 Sum_probs=33.4
Q ss_pred CeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecc
Q 004924 615 PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLT 654 (723)
Q Consensus 615 ~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 654 (723)
.+.+++..++..++++-+.|+++++|++.+++++.+....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 4455666788899999999999999999999998876643
No 383
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=26.09 E-value=23 Score=28.91 Aligned_cols=29 Identities=7% Similarity=0.208 Sum_probs=24.3
Q ss_pred hccccccchhhHHhhhcCChHHHHHHHhhc
Q 004924 154 ETRVFFDINYFREYITSGEWDNAEKYLSAF 183 (723)
Q Consensus 154 Es~i~~~~~~l~~~i~~G~w~~~~~~l~~l 183 (723)
|||+...+..+-+.|. |+|+++...++..
T Consensus 44 ~sGL~y~~~pmgT~IE-Ge~devm~vvk~~ 72 (106)
T 1vk8_A 44 SWGMKYEVGPSNTTVE-GEFEEIMDRVKEL 72 (106)
T ss_dssp TTCSCEEECSSCEEEE-ECHHHHHHHHHHH
T ss_pred HcCCCeEeCCCccEEE-cCHHHHHHHHHHH
Confidence 7999998877777765 9999999998755
No 384
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=23.53 E-value=5.2e+02 Score=25.17 Aligned_cols=240 Identities=8% Similarity=-0.016 Sum_probs=0.0
Q ss_pred CCEEEEEe-CCcEEEEEcCCCcEEEE---------EeCCCCCeEEEEEcCCCeEEEEECCCcEEEEeC---------CCC
Q 004924 449 GSHLFSAS-GGKISIFSLETFQTLAT---------FANPPPIATYFILLPQDLFAFGFDDSSILVHCP---------CTK 509 (723)
Q Consensus 449 ~~~l~s~s-dg~I~vwd~~~~~~~~~---------~~~~~~~v~~l~~~p~~~l~sgs~dg~I~iwd~---------~~~ 509 (723)
..++++.+ +|.|+--.+.+.+..+. +.....-+..+..+..+.++..+..|.++-+.. ..|
T Consensus 3 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G 82 (307)
T 1zi0_A 3 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARG 82 (307)
T ss_dssp CEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCC
T ss_pred CcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCC
Q ss_pred cEEE---EEcCcCCcEEEEEEc--CCCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCE
Q 004924 510 KTKA---KLKGHQNRITCLAYS--LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 584 (723)
Q Consensus 510 ~~~~---~l~~~~~~i~~l~~s--pdg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~ 584 (723)
.++. .+.....-+..+... .++.+++.++.+|.++-..+..........+..+.-... +.+..+....+...
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~---d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 83 RPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG---DELIGVDLTSGEDE 159 (307)
T ss_dssp EEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT---CCEEEEEEECTTCE
T ss_pred eEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC---CEEEEEEEeCCCCE
Q ss_pred EEE-EcCCcEEEEECC---------CCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEE-eec
Q 004924 585 LLS-IHEGQIDVYEAP---------TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ-INL 653 (723)
Q Consensus 585 l~~-s~dg~I~vwd~~---------~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~-~~~ 653 (723)
++. +.+|.+..++.. .|.....+.. ...|.++....++..+++.+..|.++-.++.......+ -.+
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~---~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG 236 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGE---GDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG 236 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT---TCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCC
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCC---CCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCC
Q ss_pred ccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCC
Q 004924 654 TAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 654 ~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~ 697 (723)
..........+.+- .+.... +...++..+.+|.+.-..+..
T Consensus 237 ~~~~~~~~~~~~lv--~~~~v~-~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 237 VISIKVTERNGLVV--GAVQVD-DCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EESSCCCTTTCSEE--EEEEEC-TTCEEEEEESSCCEEEEEGGG
T ss_pred EEeeEecCCCCeEE--EEEEeC-CCceEEEEcCCCcEEEEeccc
No 385
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=23.11 E-value=34 Score=26.47 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=27.1
Q ss_pred cccchHHHHHHHHHHhhhhhhHHHHHHHhhhccccc
Q 004924 124 EKETKEELIYLIHQFLNEEEFKETLHKLEQETRVFF 159 (723)
Q Consensus 124 ~~~~~~evirlI~q~L~e~G~~~s~~~L~~Es~i~~ 159 (723)
++-+..++.+=|+++|++.| .++..|-++-|++-
T Consensus 11 ~d~~~~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk 44 (82)
T 1oyi_A 11 DERSNAEIVCEAIKTIGIEG--ATAAQLTRQLNMEK 44 (82)
T ss_dssp --CCSHHHHHHHHHHHSSST--EEHHHHHHHSSSCH
T ss_pred cccchHHHHHHHHHHHHHcC--CCHHHHHHHHCcCH
Confidence 44466688899999999999 88888999988855
No 386
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=22.09 E-value=5.7e+02 Score=25.14 Aligned_cols=231 Identities=11% Similarity=0.067 Sum_probs=114.6
Q ss_pred EEEEEe-CCcEEEEEcCCCc----EEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeC---CC------CcEEEE-
Q 004924 451 HLFSAS-GGKISIFSLETFQ----TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCP---CT------KKTKAK- 514 (723)
Q Consensus 451 ~l~s~s-dg~I~vwd~~~~~----~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~---~~------~~~~~~- 514 (723)
++++.+ +|.|+--.+...+ ....+.. .+.+..+...... .++..+..|.++-+.. .. |.++..
T Consensus 7 ~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~ 85 (323)
T 1wp5_A 7 VIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANI 85 (323)
T ss_dssp EEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGT
T ss_pred EEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhc
Confidence 455666 7888766543211 1111222 2334333333334 6667777887665543 21 222111
Q ss_pred --EcCcCCcEEEE-EEcC--CCCEEEEEeCCCcEEEEeCCCCceee-ceee--eeeecCCCCCCCCeEEEEEcc-CCCEE
Q 004924 515 --LKGHQNRITCL-AYSL--SLNVLVSSGADAQLCVWDAVGWKKLC-SKFL--HSFQTGLVPETTIVNHIQFHP-DQIHL 585 (723)
Q Consensus 515 --l~~~~~~i~~l-~~sp--dg~~l~s~s~dg~I~vwd~~~~~~~~-~~~l--~~~~~~~~~~~~~v~~l~~sp-dg~~l 585 (723)
+. ....|..+ ...+ ++.+++.++.+|.++-..+....... ..-+ ..+..+ +.+..+.... +...+
T Consensus 86 i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-----d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 86 IPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-----DQVVDVHLTDGMNELF 159 (323)
T ss_dssp SCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-----CCEEEEEEECSCSEEE
T ss_pred cCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-----CEEEEEEEeCCCCEEE
Confidence 11 22345544 3332 25679999999999988775422111 1111 112222 3455554444 33445
Q ss_pred EEEcCCcEEEEECCCC-------ceeEEecCCCCCCCeEEEEEeeCCc-EEEEEeCCCcEEEEECCCCcE-------EEE
Q 004924 586 LSIHEGQIDVYEAPTL-------NHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLEL-------RCQ 650 (723)
Q Consensus 586 ~~s~dg~I~vwd~~~~-------~~~~~~~~~~h~~~v~~l~~spdg~-~l~sgs~dg~I~iwd~~~~~~-------~~~ 650 (723)
+.+.+|.+..++...- +-+.-+... ....|.++..-+++. .++..+..|..+..++..-.. +..
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~ 238 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVI 238 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEEC
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEEC
Confidence 5588898888876421 112222221 245677765544455 788888888887776653211 111
Q ss_pred eecccccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCC
Q 004924 651 INLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 651 ~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~ 697 (723)
+. .... .++.+. .+..+.+ +..++..+.+|.+....+..
T Consensus 239 ~~--~~~~---~~~~l~-~~~~v~~--~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 239 LR--ELKA---NPHRIS-GFVVAQD--SDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp SC--CCSS---SCCCEE-EEEEECT--TCEEEEEETTSCEEEEEGGG
T ss_pred ee--ecCC---CCceEE-EEEEeCC--CCeEEEEeCCCeEEEEEhhh
Confidence 11 0000 011121 1233333 45677777888877666654
No 387
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=21.33 E-value=5.8e+02 Score=24.90 Aligned_cols=242 Identities=8% Similarity=-0.012 Sum_probs=0.0
Q ss_pred CCEEEEEe-CCcEEEEEcCCC--------cEEEEEeCCCCCeEEEEEcCCC-eEEEEECCCcEEEEeC---------CCC
Q 004924 449 GSHLFSAS-GGKISIFSLETF--------QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCP---------CTK 509 (723)
Q Consensus 449 ~~~l~s~s-dg~I~vwd~~~~--------~~~~~~~~~~~~v~~l~~~p~~-~l~sgs~dg~I~iwd~---------~~~ 509 (723)
..++++.+ +|.|+--.+... .....-....+.+..+...... .++..+..|.++-+.. ..|
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G 87 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKG 87 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCC
Q ss_pred cE---EEEEcCcCCcEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCceeeceeeeeeecCCCCCCCCeEEEEEccCCCE
Q 004924 510 KT---KAKLKGHQNRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 584 (723)
Q Consensus 510 ~~---~~~l~~~~~~i~~l~~sp--dg~~l~s~s~dg~I~vwd~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~ 584 (723)
.+ .-.+.....-+..+.... +...++..+..|.++...+.........-+..+.-... ..+..+....++..
T Consensus 88 ~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~---d~lv~~~~~~~~~~ 164 (312)
T 1suu_A 88 QNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDK---DFVTSAEIVFKDEK 164 (312)
T ss_dssp CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTT---CCEEEEEEECTTCE
T ss_pred cChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCC---CEEEEEEEeCCCCE
Q ss_pred EEE-EcCCcEEEEECC---------CCceeEEecCCCCCCCeEEEEEeeCCcEEEEEeCCCcEEEEECCCCcEEEEeecc
Q 004924 585 LLS-IHEGQIDVYEAP---------TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLT 654 (723)
Q Consensus 585 l~~-s~dg~I~vwd~~---------~~~~~~~~~~~~h~~~v~~l~~spdg~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 654 (723)
++. +.+|.+..++.. .|.....+.. ...|.++..-.++..+++.+..|.....++..-....+-...
T Consensus 165 i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~---~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kG 241 (312)
T 1suu_A 165 VICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE---GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATG 241 (312)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT---TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCC
T ss_pred EEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC---CCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCC
Q ss_pred cccCCCCccCccceEEEEEecCCCCEEEEEECCCcEEEEecCC
Q 004924 655 AYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 697 (723)
Q Consensus 655 ~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iWd~~~ 697 (723)
.....-.......+.++.... +...+...+..|.+.-..+.+
T Consensus 242 v~~~~~~k~~~~~lv~~~~~~-~~~~l~~~t~~g~~~r~~~~~ 283 (312)
T 1suu_A 242 YTSYKKSDKKAGSVVDAIAVS-EDDEILLVSKRSKALRTVAGK 283 (312)
T ss_dssp EECSCTTCTTTCSEEEEEEEC-TTCEEEEEETTCEEEEEEGGG
T ss_pred EEeeEccCCCCCeEEEEEEeC-CCCEEEEEeCCCeEEEEEccc
No 388
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=20.22 E-value=2.5e+02 Score=30.67 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=39.5
Q ss_pred CeEEEEEeeCCcEEEEEeCC------------CcEEEEECCCCcEEEEeecccccCCCCccCccceEEEEEecCCCCEEE
Q 004924 615 PITYATYSCDGKCIYVSCKS------------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 682 (723)
Q Consensus 615 ~v~~l~~spdg~~l~sgs~d------------g~I~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la 682 (723)
..-.++|+|.|.++++-..+ +.+.+.+..++++...+..+ .+.+ ++.++|+| |++.|.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P-------~gaE--~TG~~fsp-Dg~tlf 546 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP-------IGCE--VTGISFSP-DQKTLF 546 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECC-------TTCE--EEEEEECT-TSSEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCC-------CCcc--CcCeeECC-CCCEEE
Confidence 45679999999966654322 34666677778776655432 2333 45999999 777766
Q ss_pred EE
Q 004924 683 LG 684 (723)
Q Consensus 683 s~ 684 (723)
+.
T Consensus 547 vn 548 (592)
T 3zwu_A 547 VG 548 (592)
T ss_dssp EE
T ss_pred EE
Confidence 54
Done!