BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004925
(723 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P79051|RHP16_SCHPO ATP-dependent helicase rhp16 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rhp16 PE=3 SV=2
Length = 861
Score = 526 bits (1354), Expect = e-148, Method: Compositional matrix adjust.
Identities = 292/707 (41%), Positives = 415/707 (58%), Gaps = 99/707 (14%)
Query: 21 EDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTI 80
E P +L+ LL +Q+E + W +QE+S+ GGILADEMGMGKTIQ IAL+L+ E RG
Sbjct: 246 EQPKELVLNLLPFQREGVYWLKRQEDSSFGGGILADEMGMGKTIQTIALLLS--EPRG-- 301
Query: 81 GELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQ 140
K TLV+ PV A+ QW EI+ T+ + L Y+G R+ S ++
Sbjct: 302 ----------------KPTLVVAPVVAIMQWKEEIDTHTNKALSTYL-YYGQARDISGEE 344
Query: 141 FSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQS 200
S +Y ++ Y +S Y+K+
Sbjct: 345 LS-------SYDVVLTSYN------------VIESVYRKE-------------------- 365
Query: 201 KQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRS 260
++G + G V++ KS LH +++ RIILDEAH IK R
Sbjct: 366 ------------------RSGFRRKNGVVKE----KSLLHQMEFYRIILDEAHGIKSRTC 403
Query: 261 NTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDY---S 317
NTA+AV L ++ K LSGTPLQNR+GEL+SL+RFL+ P++YY+C C+CK L +
Sbjct: 404 NTARAVCGLRTTRKICLSGTPLQNRIGELFSLLRFLRADPFAYYYCLQCECKSLHWRFSD 463
Query: 318 SAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRA 377
+ C C H + H C++N + PIQ G G+ A + H +L+ ++LRRTK RA
Sbjct: 464 RSNCDECGHKPMSHTCYFNAEMLKPIQKFGYEGPGKLAFKKV-HSLLKHIMLRRTKLERA 522
Query: 378 ADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLR 437
DL LPPR+V +R+D + E D Y+SLY +S+ +FNTY+ G V+NNYA+IF L+TR+R
Sbjct: 523 DDLGLPPRVVEVRKDLFNEEEEDVYQSLYMDSKRKFNTYLAEGVVLNNYANIFQLITRMR 582
Query: 438 QAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACL---F 494
Q DHP LV+ SK ++ E + + VC +C+++A D + + C H FC+ C+
Sbjct: 583 QMADHPDLVLASKRKTVDIENQENI-----VCKICDEVAQDAIESRCHHTFCRLCVTEYI 637
Query: 495 DSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKI 554
+++ CP+C IPL++D +A K FK++SILNRI ++ ++SSTKI
Sbjct: 638 NAAGDGENVNCPSCFIPLSIDLSAPALEDFSEEK-----FKNASILNRIDMNSWRSSTKI 692
Query: 555 EALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAIN 614
EAL EE+ + ++D + K IVFSQFTS LDLI++ L K+G NCV+L G M+ AR A I
Sbjct: 693 EALVEELYLLRKKDRTLKSIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKARAATIE 752
Query: 615 RFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRI 674
F+ D + IFL+SLKAGGVALNLT AS VF+MDPWWN AV+ QA DRIHRIGQ +PI++
Sbjct: 753 AFSNDINITIFLVSLKAGGVALNLTEASQVFMMDPWWNGAVQWQAMDRIHRIGQKRPIKV 812
Query: 675 VRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLF 721
+ IEN+IE +I++LQEKK + T+ A +L+ DM+FLF
Sbjct: 813 ITLCIENSIESKIIELQEKKAQMIHATIDQDEKALNQLSVEDMQFLF 859
>sp|P31244|RAD16_YEAST DNA repair protein RAD16 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD16 PE=1 SV=1
Length = 790
Score = 444 bits (1141), Expect = e-123, Method: Compositional matrix adjust.
Identities = 227/512 (44%), Positives = 329/512 (64%), Gaps = 27/512 (5%)
Query: 222 KKSSVGGVQKPSGGKSP--LHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSG 279
+K + G +K K P LH++ + R+ILDEAH IKDR+SNTA+AV L++ +W LSG
Sbjct: 292 RKQNYGFRRKNGLFKQPSVLHNIDFYRVILDEAHNIKDRQSNTARAVNNLKTQKRWCLSG 351
Query: 280 TPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAE---CPNCPHNSVRHFCWWN 336
TPLQNR+GE+YSL+RFL I P++ YFC CDC D+ + C +C H ++H ++N
Sbjct: 352 TPLQNRIGEMYSLIRFLNINPFTKYFCTKCDCASKDWKFTDRMHCDHCSHVIMQHTNFFN 411
Query: 337 RYVATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDI 396
++ IQ G G + ++ +L++++LRRTK RA DL LPPRIV++RRD +
Sbjct: 412 HFMLKNIQKFGVEGPGLESFNNIQ-TLLKNIMLRRTKVERADDLGLPPRIVTVRRDFFNE 470
Query: 397 READYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRG 456
E D Y SLY++S+ ++N++V+ G V+NNYA+IF L+TR+RQ DHP LV+ + + G
Sbjct: 471 EEKDLYRSLYTDSKRKYNSFVEEGVVLNNYANIFTLITRMRQLADHPDLVL-KRLNNFPG 529
Query: 457 ETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACL------FDSSASKFVAKCPTCSI 510
+ +C LCND A++P+ + C H FC+ C+ F + +K CP C I
Sbjct: 530 DDIGVV-----ICQLCNDEAEEPIESKCHHKFCRLCIKEYVESFMENNNKLT--CPVCHI 582
Query: 511 PLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLD-EFQSSTKIEALREEIRFMVERDG 569
L++D + + + FK SI++R+ + ++QSSTKIEAL EE+ +
Sbjct: 583 GLSIDLSQ------PALEVDLDSFKKQSIVSRLNMSGKWQSSTKIEALVEELYKLRSNKR 636
Query: 570 SAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 629
+ K IVFSQFTS LDL+ + L ++G V+L GSMS RD I F + C++FL+SL
Sbjct: 637 TIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMSPTQRDETIKYFMNNIQCEVFLVSL 696
Query: 630 KAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILK 689
KAGGVALNL AS VF++DPWWNP+VE Q+ DR+HRIGQY+P++I RF IE++IE RI++
Sbjct: 697 KAGGVALNLCEASQVFILDPWWNPSVEWQSGDRVHRIGQYRPVKITRFCIEDSIEARIIE 756
Query: 690 LQEKKKLVFEGTVGGSADAFGKLTEADMRFLF 721
LQEKK + T+ A +LT AD++FLF
Sbjct: 757 LQEKKANMIHATINQDEAAISRLTPADLQFLF 788
Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 84/154 (54%), Gaps = 21/154 (13%)
Query: 8 DLDQQNAFMTETAEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAI 67
DL ++ + ++ P + LL +Q E L W + QEES GG+LADEMGMGKTIQ I
Sbjct: 162 DLKNAPPYVPQRSKQPDGMTIKLLPFQLEGLHWLISQEESIYAGGVLADEMGMGKTIQTI 221
Query: 68 ALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVL 127
AL++ D + S S LV+ P A+ QW +EI + T G K+
Sbjct: 222 ALLMN-----------DLTKSPS---------LVVAPTVALMQWKNEIEQHTK-GQLKIY 260
Query: 128 IYHGSNRERSAKQFSEFDFVITTYSIIEADYRKH 161
IYHG++R K +D V+TTY+++E+ +RK
Sbjct: 261 IYHGASRTTDIKDLQGYDVVLTTYAVLESVFRKQ 294
>sp|O60177|YG42_SCHPO Uncharacterized ATP-dependent helicase C23E6.02
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.02 PE=3 SV=1
Length = 1040
Score = 306 bits (785), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 234/774 (30%), Positives = 358/774 (46%), Gaps = 165/774 (21%)
Query: 8 DLDQQNAFMTETAE-DPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQA 66
DLD+Q E P LI L+ +QKE L W + EES+ +GGILAD+MG+GKT+QA
Sbjct: 367 DLDEQLVNDPTIREGTPAGLIPTLMEHQKEGLMWLKRLEESSKKGGILADDMGLGKTVQA 426
Query: 67 IALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEI-NRFTSVGSTK 125
+AL++ + S S +K TL+I PV+ + QW +EI +
Sbjct: 427 LALLVTR-----------PPESKS-----VKTTLIITPVSLLQQWHNEILTKIAPSHRPT 470
Query: 126 VLIYHGSNRE-RSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVH 184
V I+HGS+++ + A+Q + +Y I+ Y K K Y
Sbjct: 471 VYIHHGSSKKHKIAEQ-------LMSYDIVLTTYNVIAYEFKNKMAY------------- 510
Query: 185 LKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKW 244
S+ + P KK P +W
Sbjct: 511 -----------------------DKSIEDNAPIKK--------------FEHLPFFEAEW 533
Query: 245 ERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYY 304
R+ILDEA IK+R + A+ LES+Y+W LSGTP+QN V E YSL++FL+I PYS
Sbjct: 534 YRVILDEAQTIKNRNTLAARGCCLLESTYRWCLSGTPMQNGVEEFYSLIKFLRIKPYS-- 591
Query: 305 FCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRAMILLKHKVL 364
D+SS +++ P+ ++ N+ + +L
Sbjct: 592 ----------DWSS----------------FSKDFTIPLSSNINTSAPMKRF----RGLL 621
Query: 365 RSVILRRTKKGRAAD---LALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGT 421
++V+LRRTK + L LPP+ L E ++Y +L S +Q Q Y+Q GT
Sbjct: 622 KAVLLRRTKNTKIDGKPILTLPPKTAVKSETDLSSSEMEFYNTLQSGAQIQMRKYLQEGT 681
Query: 422 VMNNYAHIFDLLTRLRQAVDHPYLVVYSKTA-----SLRGETEAD-----AEHVQQV--- 468
+ +Y + LL RLRQA HP+L+V + A S + + A E V ++
Sbjct: 682 ITTHYGSLLVLLLRLRQACCHPWLIVAREAAVDDNDSFQAKNRAIYNQIYPEAVNRLKLI 741
Query: 469 ----CGLCNDL-ADDPVVTNCGHAFCKACLF-----------DSSASKFVAKCPTCSIPL 512
C LC D+ A+ ++ CGH C+ CL +S KC C +
Sbjct: 742 ETLQCSLCMDVVAELLIIVPCGHFLCRECLTHVITSSEDMAKQTSNENISPKCSVCEEYI 801
Query: 513 TVD-------FTANEG------AGNRTSKTTIKGF---KSSSILNRIQL--------DEF 548
+ F G A N+ I + S+IL Q+ +
Sbjct: 802 DTERLLSYALFRRYSGMAPIVDADNKLRTENISELLPKQYSNILENRQMGMKIFTDPKHW 861
Query: 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPA 608
+STKIE ++ ++++ + K ++FSQF SFL+L + G+ + G +S
Sbjct: 862 TTSTKIEKALNAVKEIIKKQPTDKILIFSQFVSFLELFTVPFRQEGIKYLMYTGGLSTAE 921
Query: 609 RDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQ 668
R+ A+ F DP+ ++ L+SLKAG V LNLT A+HV ++DP+WNP +E+QA DR HRIGQ
Sbjct: 922 RNQALINFEVDPNVRVLLISLKAGNVGLNLTCANHVIILDPFWNPYIEEQAVDRAHRIGQ 981
Query: 669 YKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSA-DAFGKLTEADMRFLF 721
KP+ I+R + NTIEER+L LQ++K+ + + +G +L ++ FLF
Sbjct: 982 DKPVNILRIVTNNTIEERVLALQDRKRELIDSALGEKGLREISRLNTKELSFLF 1035
>sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily A member 3-like 2 OS=Arabidopsis
thaliana GN=At5g22750 PE=2 SV=1
Length = 1029
Score = 306 bits (784), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 223/716 (31%), Positives = 348/716 (48%), Gaps = 146/716 (20%)
Query: 50 RGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVT 109
RGGILAD MG+GKT+ I+L+LA + ++STG L CP
Sbjct: 413 RGGILADAMGLGKTVMTISLLLAH-----------SWKAASTGFL--------CPNYEGD 453
Query: 110 QWVSE-INRFTS--VGSTKVLIYHGSNRERSAKQFSEFDFVITTYSII---EADYRKHVM 163
+ +S ++ TS V +TK L + E+ + + + ++ +++ + + H
Sbjct: 454 KVISSSVDDLTSPPVKATKFLGFDKRLLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMHAK 513
Query: 164 PPKQKCQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKK 223
P L V++ Y + + K K +S V G +
Sbjct: 514 P--------------GSLSVYVHY--------GQSRPKDAKLLSQSDVVITTYGVLTSEF 551
Query: 224 SSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQ 283
S Q+ S +++++W RI+LDEAH IK+ +S + A AL + +W L+GTP+Q
Sbjct: 552 S-----QENSADHEGIYAVRWFRIVLDEAHTIKNSKSQISLAAAALVADRRWCLTGTPIQ 606
Query: 284 NRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPI 343
N + +LYSL+RFL+I P+ + WWN+ V P
Sbjct: 607 NNLEDLYSLLRFLRIEPWGTW----------------------------AWWNKLVQKPF 638
Query: 344 QTHGNSYGGRRAMILLKHKVLRSVILRRTK-----KGRAADLALPPRIVSLRRDSLDIRE 398
+ G R + L++ +L+ ++LRRTK +GR L LPP + L E
Sbjct: 639 EE-----GDERGLKLVQ-SILKPIMLRRTKSSTDREGRPI-LVLPPADARVIYCELSESE 691
Query: 399 ADYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVV-------YS-- 449
D+Y++L+ S+ +F+ +V+ G V++NYA I +LL RLRQ DHP+LV+ YS
Sbjct: 692 RDFYDALFKRSKVKFDQFVEQGKVLHNYASILELLLRLRQCCDHPFLVMSRGDTAEYSDL 751
Query: 450 ----------KTASLRGE-----TEADAEHV--------QQVCGLCNDLADDPVVTNCGH 486
K++ L E +EA + V Q C +C + +D V+T C H
Sbjct: 752 NKLSKRFLSGKSSGLEREGKDVPSEAFVQEVVEELRKGEQGECPICLEALEDAVLTPCAH 811
Query: 487 AFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLD 546
C+ CL S + CP C N SK + + S R Q+D
Sbjct: 812 RLCRECLLASWRNSTSGLCPVCR--------------NTVSKQELITAPTES---RFQVD 854
Query: 547 ---EFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGS 603
+ S+KI AL EE+ + R +K I+FSQ+T+FLDL+ L ++ + V+L G+
Sbjct: 855 VEKNWVESSKITALLEELEGL--RSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGT 912
Query: 604 MSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRI 663
+S R+ + F+ED + LMSLKAGGV +NLT AS+ F+MDPWWNPAVE+QA RI
Sbjct: 913 LSQQQREKVLKEFSEDGSILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRI 972
Query: 664 HRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRF 719
HRIGQ K ++I RF+++ T+EER+ +Q +K+ + G + ++ E M F
Sbjct: 973 HRIGQTKEVKIRRFIVKGTVEERMEAVQARKQRMISGALTDQEVRSARIEELKMLF 1028
>sp|Q10332|YBMA_SCHPO Uncharacterized ATP-dependent helicase C582.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC582.10c PE=1 SV=1
Length = 830
Score = 305 bits (781), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 234/746 (31%), Positives = 350/746 (46%), Gaps = 164/746 (21%)
Query: 4 KDDVDLDQQNAFMTETAEDPPDLITPLLRYQKEWLAWALKQE---ESAIRGGILADEMGM 60
KDD + +Q++F+ P + LL +Q + L W +E +S+ GGILAD+MG+
Sbjct: 215 KDD-SMQRQSSFI-------PGMHIRLLDHQVQGLTWLKSRETVSKSSASGGILADDMGL 266
Query: 61 GKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFTS 120
GKTIQ IAL+L+ L S IK+TLV+ P++ + QW SE+ +
Sbjct: 267 GKTIQMIALILSH--------PLPKKKHS------IKSTLVVAPLSLIKQWESEVQTKSK 312
Query: 121 VGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKK 180
+ + ++YHG++R + K E+D VITTY I+ +++ H
Sbjct: 313 LTA---IVYHGASRYKLLKVIHEYDVVITTYQILVSEWVSH------------------- 350
Query: 181 LVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLH 240
+ T+ +S E K YE +KPS L
Sbjct: 351 -----------NTTGTDGKSPTEAKS-----YEK---------------KKPS-----LF 374
Query: 241 SLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITP 300
+ W RIILDEAH IK++ S +A A AL+ +W L+GTPLQN V ELYSLV+FL I P
Sbjct: 375 AFYWWRIILDEAHTIKNKSSKSALACCALQGINRWCLTGTPLQNNVDELYSLVKFLHINP 434
Query: 301 YSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRAMILLK 360
++ D S W ++ P+ G ++ +
Sbjct: 435 FN------------DQSV----------------WKDQISLPL------CQGEENLVFKR 460
Query: 361 HKVLRSVI-LRRTK---------KGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQ 410
++L SVI LRRTK G L L R+V + E D+Y +L +
Sbjct: 461 LRMLLSVIMLRRTKTLLEANAGKDGTGGALKLSKRLVYKVICKFEESERDFYSNLARNME 520
Query: 411 AQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCG 470
+ +V +G + NY +I LL RLRQA +HP ++ + + E + DA +
Sbjct: 521 RTMSNFVNSGKLGKNYTNILCLLLRLRQACNHP------QSLNFQFEQDVDAFNALDGAA 574
Query: 471 LCNDLADDPVVTNCGH------------AFCKACLFDSSASKFVAKCPTCSIPLTVDFTA 518
N LA D V + + +FC C+ + KC CS
Sbjct: 575 NTNKLASDQDVDDLANLLETVEIGSRKKSFCTICMAELPPDFHEKKCKDCSRNFK---EL 631
Query: 519 NEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQ 578
++G + KT K K IL + LDE + + LR K I+FSQ
Sbjct: 632 DKGIQDPNDKTLYKSSKIREILKILSLDEQEEDDTVRGLR-------------KTIIFSQ 678
Query: 579 FTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNL 638
FT+FLD+I+ L K+G+ V+ G M+ AR+ +++ D ++ L SLK G + LNL
Sbjct: 679 FTTFLDIIDLHLRKAGIGFVRYDGRMNNRAREKSLDLLRSDSGTQVLLCSLKCGALGLNL 738
Query: 639 TVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVF 698
T AS V L D WWNPA+E+QA DR+HRIGQ + + + + ++ENTIEE+I++LQ K+ +
Sbjct: 739 TCASRVILCDVWWNPAIEEQAIDRVHRIGQRRDVLVYKLVVENTIEEKIVELQNLKRDLA 798
Query: 699 EGTVG-GSADAF--GKLTEADMRFLF 721
+ +G G F KLT D+ FLF
Sbjct: 799 KQALGDGKKSVFTSKKLTLNDLLFLF 824
>sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily A member 3-like 3 OS=Arabidopsis
thaliana GN=At5g43530 PE=3 SV=1
Length = 1277
Score = 296 bits (757), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 178/522 (34%), Positives = 261/522 (50%), Gaps = 81/522 (15%)
Query: 231 KPSGGKSPLHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELY 290
K S H + W RI+LDEAH IK ++ AKA L S +W L+GTPLQN++ +LY
Sbjct: 803 KQDMANSIFHRIDWYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLTGTPLQNKLEDLY 862
Query: 291 SLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSY 350
SL+ FL + P+ ++ WW++ + P +
Sbjct: 863 SLLCFLHVEPWC----------------------------NWAWWSKLIQKPYEN----- 889
Query: 351 GGRRAMILLKHKVLRSVILRRTKKGRAAD----LALPPRIVSLRRDSLDIREADYYESLY 406
G R + L+K +LR ++LRRTK+ R + L LPP V + E D+Y +L+
Sbjct: 890 GDPRGLKLIK-AILRPLMLRRTKETRDKEGSLILELPPTDVQVIECEQSEAERDFYTALF 948
Query: 407 SESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVV-------YSKTASL----- 454
S+ QF+ +V G V++NYA+I +LL RLRQ +HP+LV+ Y+ SL
Sbjct: 949 KRSKVQFDQFVAQGKVLHNYANILELLLRLRQCCNHPFLVMSRADSQQYADLDSLARRFL 1008
Query: 455 ---------RGETEADAEHVQQ--------VCGLCNDLADDPVVTNCGHAFCKACLFDSS 497
+ A E V Q C +C + ADDPV+T C H C+ CL S
Sbjct: 1009 DNNPDSVSQNAPSRAYIEEVIQDLRDGNSKECPICLESADDPVLTPCAHRMCRECLLTSW 1068
Query: 498 ASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEAL 557
S CP C L +T + + SI + ++ S+K+ L
Sbjct: 1069 RSPSCGLCPICRTIL--------------KRTELISCPTDSIFRVDVVKNWKESSKVSEL 1114
Query: 558 REEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFT 617
+ + + + K IVFSQ+TSFLDL+ L + G ++ G ++ R+ + F
Sbjct: 1115 LKCLEKIKKSGSGEKSIVFSQWTSFLDLLEIPLRRRGFEFLRFDGKLAQKGREKVLKEFN 1174
Query: 618 EDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRF 677
E I LMSLKAGGV LNLT AS VFLMDPWWNPAVE+QA RIHRIGQ + + + RF
Sbjct: 1175 ETKQKTILLMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRF 1234
Query: 678 LIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRF 719
++++T+EER+ ++Q +K+ + G + +L E M F
Sbjct: 1235 IVKDTVEERMQQVQARKQRMIAGALTDEEVRSARLEELKMLF 1276
Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 73/127 (57%), Gaps = 15/127 (11%)
Query: 50 RGGILADEMGMGKTIQAIALVLAKREIRGT-------IGELDASSSSS----TGLLGIKA 98
RGGILAD MG+GKT+ IAL+LA R RG + +++A + L +KA
Sbjct: 681 RGGILADAMGLGKTVMTIALILA-RPGRGNPENEDVLVADVNADKRNRKEIHMALTTVKA 739
Query: 99 ---TLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIE 155
TL+ICP+A ++QW E+ + + VL+Y+G +R AK + D V+TTY ++
Sbjct: 740 KGGTLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRTHDAKAIASHDVVLTTYGVLT 799
Query: 156 ADYRKHV 162
+ Y++ +
Sbjct: 800 SAYKQDM 806
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1
SV=1
Length = 1003
Score = 270 bits (689), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 176/491 (35%), Positives = 257/491 (52%), Gaps = 72/491 (14%)
Query: 237 SPLHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFL 296
SPLHS+KW R+ILDE H I++ + KAVL LE+ +W L+GTP+QN + +L+SL+ FL
Sbjct: 538 SPLHSIKWLRVILDEGHAIRNPNAQQTKAVLELEAERRWVLTGTPIQNSLKDLWSLLSFL 597
Query: 297 QITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRAM 356
++ P+ +D WW R + P+ T G+ G RR
Sbjct: 598 KLKPF------------IDRE----------------WWYRIIQRPVTT-GDEGGLRRLQ 628
Query: 357 ILLKHKVLRSVILRRTK----KGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQ 412
L+K+ + LRRTK KG+ L LP R V ++ +L E Y+S+ +E +A
Sbjct: 629 SLIKN-----ITLRRTKTSKIKGKPV-LELPERKVFIQHITLSEEERKIYQSVKNEGKAA 682
Query: 413 FNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADA-EHVQQV--- 468
Y GTV+ +YA + LL RLRQ H +L+ ++S G + +D E ++++
Sbjct: 683 IGRYFTEGTVLAHYADVLGLLLRLRQICCHTHLLTNGMSSS--GPSRSDTPEELRKMLIE 740
Query: 469 -------------CGLCNDLADDPVVTNCGHAFCKACLFDSSASKFV-AKCPTCSIPLTV 514
C +C D PV+T+C H FCK C+ S+ AKCP C
Sbjct: 741 KMKIILSSGSDEECAICLDSLTFPVITHCAHVFCKPCICQVIHSEQPHAKCPLCR----- 795
Query: 515 DFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGI 574
NE G+ + + S ++ E++SS+KI AL + + +D + K +
Sbjct: 796 ----NEIHGDNLLECPPEELACDS--DKESSMEWKSSSKINALMHALIELRTKDPNIKSL 849
Query: 575 VFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRF--TEDPDCKIFLMSLKAG 632
V SQFT+FL LI L SG +L GSM+ R +I RF TE I L+SLKAG
Sbjct: 850 VVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQRFQNTEAGSPTIMLLSLKAG 909
Query: 633 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQE 692
GV LNL AS VFLMDP WNPA E Q DR HR+GQ + + I +F++++++EE +LK+Q
Sbjct: 910 GVGLNLCAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQN 969
Query: 693 KKKLVFEGTVG 703
K+ + G G
Sbjct: 970 TKRDLAAGAFG 980
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 73 KREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFT-SVGSTKVLIYHG 131
++ ++ + ++ S + TG +ATL+ICP++ ++ W+ + + S +Y+G
Sbjct: 447 RKMLKKGMSMMECSEACDTGER-TRATLIICPLSVLSNWIDQFGQHVKSEVHLNFYVYYG 505
Query: 132 SNRERSAKQFSEFDFVITTYSIIEADY 158
+R R + S+ D ++TTY+I+ DY
Sbjct: 506 PDRIRDSAWLSKQDIILTTYNILTHDY 532
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 29/80 (36%)
Query: 22 DPPDLI-TPLLRYQKEWLAWALKQEESA----------------------------IRGG 52
+P + I TPLL +QK+ LAW + +E S + GG
Sbjct: 231 EPAEAIETPLLPHQKQALAWMIARENSKELPPFWEQRNDLYYNTITNFSVKERPENVHGG 290
Query: 53 ILADEMGMGKTIQAIALVLA 72
ILAD+MG+GKT+ AIA++L
Sbjct: 291 ILADDMGLGKTLTAIAVILT 310
>sp|Q5NC05|TTF2_MOUSE Transcription termination factor 2 OS=Mus musculus GN=Ttf2 PE=1 SV=2
Length = 1138
Score = 269 bits (687), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 211/722 (29%), Positives = 335/722 (46%), Gaps = 135/722 (18%)
Query: 17 TETAEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREI 76
T AEDP L PLL +QK+ LAW L +E +GGILAD+MG+GKT+ IAL+L K+
Sbjct: 533 TAVAEDPAGLKVPLLLHQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTKKNQ 592
Query: 77 RGT-----------IGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTK 125
+ + + + D+S +S+G TL++CP + + W +E+ + + +
Sbjct: 593 QKSKEKERSEPVTWLSKNDSSVFTSSG------TLIVCPASLIHHWKNEVEKRVTSNRLR 646
Query: 126 VLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHL 185
+ +YHG NR R AK V++TY I+ Y S K++
Sbjct: 647 IYLYHGPNRSRHAK-------VLSTYDIVITTY----------------SLLAKEIPT-- 681
Query: 186 KYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWE 245
+KQE G+ G SV G +PL + W
Sbjct: 682 --------------TKQE-------------GEVPGANLSVEGT------SAPLLQVVWA 708
Query: 246 RIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYF 305
RIILDEAH +K+ R T+ AV L++ +WA++GTP+QN + ++YSL++FL+ +P+
Sbjct: 709 RIILDEAHNVKNPRVQTSIAVCKLQAQARWAVTGTPIQNNLLDMYSLMKFLRCSPFD--- 765
Query: 306 CKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRAMILLKHKVLR 365
F W V +G+ GG R IL K
Sbjct: 766 -------------------------EFSLWKSQV-----DNGSMKGGERLSILTK----- 790
Query: 366 SVILRRTKKGRAAD----LALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGT 421
S++LRRTK + +ALP R L R L E Y+ + S++ +Y++
Sbjct: 791 SLLLRRTKDQLDSTGKPLVALPARRCQLHRLKLSEDERAVYDIFLARSRSALQSYLKRQE 850
Query: 422 VMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASL--RGETEADAEHVQQVCGLCNDLADDP 479
++ ++ D+P+ V + S +G AD++ V L L
Sbjct: 851 GRGSHHG---------RSPDNPFSRVAQEFGSSVSQGCPAADSQRPSTVHVLSQLLR--- 898
Query: 480 VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSI 539
+ C C L S+ + + L +A + S+ + + +
Sbjct: 899 -LRQC---CCHLSLLKSALDPTELESEGLVLSLEEQLSALTLSKVDVSEPSPTVSLNGTC 954
Query: 540 LNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQ 599
D+ + STK+ +L E+ + + GS K ++ SQ+TS L ++ L K+ +
Sbjct: 955 FKAELFDDTRRSTKVSSLLAELEAIQKGPGSQKSVIVSQWTSMLQVVALHLKKNRLTYAT 1014
Query: 600 LVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQA 659
+ GS++ R + F ++ L+SL AGGV LNLT +H+FL+D WNP++E QA
Sbjct: 1015 IDGSVNPKQRMDLVEAFNHSQGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQA 1074
Query: 660 QDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRF 719
DRI+R+GQ K + I RF+ E T+EE+IL+LQEKKK + + + GS KLT AD++
Sbjct: 1075 CDRIYRVGQKKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSEGPVTKLTLADLKI 1134
Query: 720 LF 721
LF
Sbjct: 1135 LF 1136
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1
SV=2
Length = 1009
Score = 268 bits (686), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 173/495 (34%), Positives = 255/495 (51%), Gaps = 76/495 (15%)
Query: 235 GKSPLHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVR 294
G SPLHS++W R+ILDE H I++ + KAVL LES +W L+GTP+QN + +L+SL+
Sbjct: 542 GDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLLS 601
Query: 295 FLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRR 354
FL++ P+ +D WW+R + P+ T G+ G RR
Sbjct: 602 FLKLKPF------------IDRE----------------WWHRTIQRPV-TMGDEGGLRR 632
Query: 355 AMILLKHKVLRSVILRRTK----KGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQ 410
L+K+ + LRRTK KG+ L LP R V ++ +L E Y+S+ +E +
Sbjct: 633 LQSLIKN-----ITLRRTKTSKIKGKPV-LELPERKVFIQHITLSDEERKIYQSVKNEGR 686
Query: 411 AQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQV-- 468
A Y GTV+ +YA + LL RLRQ H YL+ + +++ + E +++
Sbjct: 687 ATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTYLLTNAVSSNGPSGNDTPEELRKKLIR 746
Query: 469 -------------CGLCNDLADDPVVTNCGHAFCKACLFDS-SASKFVAKCPTCSIPLTV 514
C +C D PV+T+C H FCK C+ + AKCP C +
Sbjct: 747 KMKLILSSGSDEECAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHE 806
Query: 515 DF----TANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGS 570
D E A + K+ + E+ SS+KI AL + + +++ +
Sbjct: 807 DNLLECPPEELARDSEKKSDM---------------EWTSSSKINALMHALTDLRKKNPN 851
Query: 571 AKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRF--TEDPDCKIFLMS 628
K +V SQFT+FL LI L SG +L GSM+ R +I F TE I L+S
Sbjct: 852 IKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLS 911
Query: 629 LKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERIL 688
LKAGGV LNL+ AS VFLMDP WNPA E Q DR HR+GQ + + I +F++++++EE +L
Sbjct: 912 LKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENML 971
Query: 689 KLQEKKKLVFEGTVG 703
K+Q KK+ + G G
Sbjct: 972 KIQNKKRELAAGAFG 986
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 97 KATLVICPVAAVTQWVSEINR-FTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIE 155
+ TL+ICP++ ++ W+ + + S +Y+G +R R S+ D V+TTY+I+
Sbjct: 476 RTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILT 535
Query: 156 ADY 158
DY
Sbjct: 536 HDY 538
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 28/73 (38%)
Query: 28 TPLLRYQKEWLAWALKQEESA----------------------------IRGGILADEMG 59
TPLL +QK+ LAW + +E S + GGILAD+MG
Sbjct: 238 TPLLPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTITNFSEKDRPENVHGGILADDMG 297
Query: 60 MGKTIQAIALVLA 72
+GKT+ AIA++L
Sbjct: 298 LGKTLTAIAVILT 310
>sp|Q4IJ84|RAD5_GIBZE DNA repair protein RAD5 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=RAD5 PE=3 SV=1
Length = 1154
Score = 266 bits (681), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 174/535 (32%), Positives = 269/535 (50%), Gaps = 107/535 (20%)
Query: 219 KNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALS 278
+NG KS G L SL++ RII+DEAH IK+R S T+KA + ++++WAL+
Sbjct: 646 RNGDKSFHNG----------LFSLRFFRIIIDEAHHIKNRSSKTSKACYEISATHRWALT 695
Query: 279 GTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRY 338
GTP+ N++ +L+SLVRFL + P++ +F +W +
Sbjct: 696 GTPIVNKLEDLFSLVRFLGVEPWN----------------------------NFSFWRTF 727
Query: 339 VATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAAD----LALPPRIVSLRRDSL 394
+ P + S RA+ +++ VL ++LRRTK + D + LPP+ + + L
Sbjct: 728 ITVPFE----SGDFMRALDVVQ-TVLEPLVLRRTKDMKTPDGEPLVLLPPKQIEIVNVEL 782
Query: 395 DIREADYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLV-------- 446
E D Y ++++++ F+ V+AGTVM + IF + RLRQ+ HP LV
Sbjct: 783 SETERDVYNYIFNKAKRTFSQNVEAGTVMKAFTTIFAQILRLRQSCCHPILVRNRDIVAD 842
Query: 447 ----------------------------VYSKTASLRGETEADAEHVQQV-------CGL 471
+ AS A ++Q+ C L
Sbjct: 843 EVEAGAAADAAAGLADDMDLESLITSFTAVTDKASKESNQTFGAHALEQIRDEAENECPL 902
Query: 472 C-NDLADDPVVTNCGHAFCKACLFD----SSASKFVAKCPTCSIPLT----VDFTANEGA 522
C + +D VT C H+ CK CL D + V +C +C P+ + ++
Sbjct: 903 CFEEPMNDQTVTGCWHSACKKCLLDYIKHQTDKAEVPRCFSCREPINKRDLFEVVRHDDD 962
Query: 523 GNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSF 582
+ SK K L R+ ++ SS K+ AL E+R + K +VFSQFTSF
Sbjct: 963 SDMMSK------KPRISLQRVGVN--ASSAKVVALMSELRALRREHPKMKSVVFSQFTSF 1014
Query: 583 LDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVAS 642
L LI +L ++ + ++L GSM+ AR A +N FTE I L+SL+AGGV LNLT A
Sbjct: 1015 LSLIEPALTRANIKFLRLDGSMAQKARAAVLNEFTEKKGFTILLLSLRAGGVGLNLTSAG 1074
Query: 643 HVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLV 697
VF+MDPWW+ AVE QA DR+HR+GQ +++ RF+++ ++EER+LK+QE+KK +
Sbjct: 1075 RVFMMDPWWSFAVEAQAIDRVHRMGQEAEVQVKRFVVKESVEERMLKVQERKKFI 1129
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 19/127 (14%)
Query: 51 GGILADEMGMGKTIQAIALVLAKRE-----------IRGTIGELDASSSSSTGLLGIK-A 98
GGILADEMG+GKTIQ ++LV R R + +L +S +L
Sbjct: 514 GGILADEMGLGKTIQMLSLVHTHRSEVALEARQSVVARSNVNQLTRLGKNSESILDAPCT 573
Query: 99 TLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQF-------SEFDFVITTY 151
TLV+ P++ ++QW SE + + G+ K +Y+G+ + + + + D VIT+Y
Sbjct: 574 TLVVAPMSLLSQWQSEAEKASKDGTMKTELYYGNEKSSNLQALCCASNAANAPDLVITSY 633
Query: 152 SIIEADY 158
++ +++
Sbjct: 634 GVVLSEF 640
>sp|Q95216|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF
PE=1 SV=1
Length = 1005
Score = 264 bits (675), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 172/500 (34%), Positives = 253/500 (50%), Gaps = 76/500 (15%)
Query: 235 GKSPLHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVR 294
G SPLHS++W R+ILDE H I++ + KAVL LE+ +W L+GTP+QN + +L+SL+
Sbjct: 539 GDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPIQNSLKDLWSLLS 598
Query: 295 FLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRR 354
FL++ P+ +D WW+R + P+ T G+ G RR
Sbjct: 599 FLKLKPF------------VDRE----------------WWHRTIQRPV-TMGDEGGLRR 629
Query: 355 AMILLKHKVLRSVILRRTK----KGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQ 410
L+K+ + LRRTK KG+ L LP R V ++ +L E Y+S+ SE +
Sbjct: 630 LQSLIKN-----ITLRRTKTSKIKGKPV-LELPERPVFIQHITLSDEERKIYQSVKSEGK 683
Query: 411 AQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHV----- 465
A Y GTV+ +YA + LL RLRQ H +L+ + ++S + E
Sbjct: 684 ATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTHLLTNTVSSSGPSGNDTPEELRKKLIK 743
Query: 466 ----------QQVCGLCNDLADDPVVTNCGHAFCKACLFDS-SASKFVAKCPTCSIPL-- 512
+ C +C D PV+T+C H FCK C+ + AKCP C +
Sbjct: 744 KMKLILSSGSDEECAICLDSLTVPVITHCAHVFCKPCICQCIQNEQPHAKCPLCRNDIHG 803
Query: 513 --TVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGS 570
++ E A + K+ + E+ SS+KI AL + + ++ +
Sbjct: 804 DNLLECPPEELACDSEKKSNM---------------EWTSSSKINALMHALIDLRTKNPN 848
Query: 571 AKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRF--TEDPDCKIFLMS 628
K +V SQFT+FL LI L SG +L GSM+ R +I F TE I L+S
Sbjct: 849 IKSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLS 908
Query: 629 LKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERIL 688
LKAGGV LNL AS VFLMDP WNPA E Q DR HR+GQ + + I +F++++++EE +L
Sbjct: 909 LKAGGVGLNLCAASRVFLMDPAWNPAAEDQRFDRCHRLGQKQEVIITKFIVKDSVEENML 968
Query: 689 KLQEKKKLVFEGTVGGSADA 708
K+Q K+ + G G +A
Sbjct: 969 KIQNTKRELAAGAFGTKKNA 988
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 97 KATLVICPVAAVTQWVSEINR-FTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIE 155
+ TL+ICP++ ++ W+ + + S +Y+G +R R S+ D V+TTY+I+
Sbjct: 473 RTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIRDPALLSKQDIVLTTYNILT 532
Query: 156 ADY 158
DY
Sbjct: 533 HDY 535
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 28/84 (33%)
Query: 17 TETAEDPPDLITPLLRYQKEWLAWALKQEES----------------------------A 48
T+ E + TPLL +QK+ LAW + +E S
Sbjct: 227 TQEMEPAEAVETPLLPHQKQALAWMVSRENSRELPPFWELRNDLYYNTITNFSEKDQPEN 286
Query: 49 IRGGILADEMGMGKTIQAIALVLA 72
+ GGILAD+MG+GKT+ AIA++L
Sbjct: 287 VHGGILADDMGLGKTLTAIAVILT 310
>sp|P36607|RAD5_SCHPO DNA repair protein rad5 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad8 PE=1 SV=1
Length = 1133
Score = 263 bits (673), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 170/536 (31%), Positives = 262/536 (48%), Gaps = 98/536 (18%)
Query: 237 SPLHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFL 296
S L S+ W R++LDE H I++R S TAKA ++ S +W ++GTP+ N++ +LYSL++F+
Sbjct: 643 SGLFSVHWFRVVLDEGHNIRNRESKTAKACHSISSQNRWVITGTPIVNKLDDLYSLIKFM 702
Query: 297 QITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRAM 356
+ P+ Y +W +V+ P Q S +A+
Sbjct: 703 RYEPWCNY----------------------------TYWQTFVSLPYQ----SKDVLKAL 730
Query: 357 ILLKHKVLRSVILRRTKKGRAAD----LALPPRIVSLRRDSLDIREADYYESLYSESQAQ 412
+++ +L ++LRRTK+ + + + LPP+ V + E Y+SLY+++++
Sbjct: 731 NVVQ-SILEFLVLRRTKETKDRNGNSIVTLPPKTVKIEYLDFSDSERKIYDSLYTKAKST 789
Query: 413 FNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAE-HVQQVCGL 471
N + AGT+ NY I LL RLRQA P L+ ++ ET D E V+Q L
Sbjct: 790 VNANIVAGTLFRNYTTILGLLLRLRQACCDPVLL---SNMTINSETFDDFEFSVEQFNSL 846
Query: 472 ----------------------------------CNDLADDPVVTNCGHAFCKACL---- 493
CN+ +P++ NC HA C CL
Sbjct: 847 INQFVVTGKPIPSDILKIDTLKSFEALITECPICCNEPIQNPLLLNCKHACCGDCLSEHI 906
Query: 494 -FDSSASKFVAKCPTCSIPLTVD------FTANEGAGNRTSKTTIKGFKSS-SILNRIQL 545
+ + C TC P F N G T T + G + NR+Q
Sbjct: 907 QYQKRRNIIPPLCHTCRQPFNEQDVYKPFFVKNNG----TQSTLLVGEEVKWKYWNRLQ- 961
Query: 546 DEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMS 605
S K+ L ++R + K ++FSQFT+FLD+I L + + G+MS
Sbjct: 962 -----SVKLNGLLGQLRQLTHSSEPEKVVIFSQFTTFLDIIADVLESEKMGYARFDGTMS 1016
Query: 606 IPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHR 665
R A+ F DPD + ++SLKAGGV LNLT A+HVF+MDPWW+ +VE QA DRIHR
Sbjct: 1017 QQMRSTALETFRNDPDVNVLIISLKAGGVGLNLTCANHVFIMDPWWSWSVEAQAIDRIHR 1076
Query: 666 IGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLF 721
+GQ KP+ + R+++ +T+EER+LK+QE+K + GT+G S + D++ LF
Sbjct: 1077 LGQEKPVFVTRYIVRDTVEERMLKIQERKNFI-TGTLGMSEGKQQVQSIEDIKMLF 1131
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 7/118 (5%)
Query: 50 RGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGL-LGIKATLVICPVAAV 108
RGGILADEMG+GKTI+ ++L+ + R T +A S L + + TLV+ P++ +
Sbjct: 523 RGGILADEMGLGKTIEVLSLIHS-RPCFSTDEIPEAFRHSKPSLPVASRTTLVVAPMSLL 581
Query: 109 TQWVSEINRFTSVGSTKVLIYHGSNRERSAKQF-----SEFDFVITTYSIIEADYRKH 161
QW SE + + + +IY+GS + K + +IT+Y ++ +++ +
Sbjct: 582 DQWHSEACKVSQGTKFRSMIYYGSEKPLDLKSCVIDTSTAPLIIITSYGVLLSEFSQQ 639
>sp|P0CQ67|RAD5_CRYNB DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=RAD5 PE=3 SV=1
Length = 1198
Score = 248 bits (633), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 171/566 (30%), Positives = 268/566 (47%), Gaps = 123/566 (21%)
Query: 231 KPSGGKSPLHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELY 290
+P+ L+ ++ RI+LDEAH I++R + +KA L+ +WAL+GTP+ NR+ +LY
Sbjct: 669 RPNYEGGSLYDHEFLRIVLDEAHNIRNRLAMVSKACYELKGQRRWALTGTPIVNRLEDLY 728
Query: 291 SLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPI--QTHGN 348
SL+ FL+ITP+ Y ++ +V P Q H
Sbjct: 729 SLLHFLRITPWGNY----------------------------SFFRSFVTVPFLNQDH-- 758
Query: 349 SYGGRRAMILLKHKVLRSVILRRTKKGRAAD----LALPPRIVSLRRDSLDIREADYYES 404
+A+ ++++ +L S +LRR K R D + LPP+ V ++ E Y+
Sbjct: 759 -----KALNVVQY-ILESCLLRREKTMRDKDGRLIVDLPPKTVEIKVLQFSRAERQIYKF 812
Query: 405 LYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSK-------------- 450
L ++ +F G M+NY I +L +LRQ VDHP LV+
Sbjct: 813 LEERAKKRFIELDADGRAMSNYTSILAMLMKLRQCVDHPLLVLGKSGEDGELGEKILESG 872
Query: 451 ---------------TASLRGETEADAEHV--------------QQVCGLCNDLADDPVV 481
+R ET D + +C LC++ D V+
Sbjct: 873 AGNGEGNLRDMIAMYAGGIRAETPDDVDKAYAAKVLKELGEQEDTPICELCSNEMFDEVL 932
Query: 482 TNCGHAFCKACLFD----SSASKFVAKCPTCSI-------------------PLTVDFTA 518
C H C+ C+ + +A CP+C P+T +
Sbjct: 933 LPCYHRSCQDCIVEWIGTCEDQNKIASCPSCGKGPIKLADLRSVQRRHKRVNPITDAYPG 992
Query: 519 NEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQ 578
+++S T + L ++ L +STK+ AL ++ + + D AK +VFSQ
Sbjct: 993 GRDPNSKSSNDT------TVTLGKVDL---VTSTKLRALLRQLEEIRQEDPKAKALVFSQ 1043
Query: 579 FTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRF---TEDPDCKIFLMSLKAGGVA 635
FTSFLDLI +L K G+ ++ G+MS R I F T +P I L+SLKAGGV
Sbjct: 1044 FTSFLDLIEATLTKQGIRWLRFDGTMSQAQRANTIEEFGRKTNEP--LILLISLKAGGVG 1101
Query: 636 LNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKK 695
LNLT+A++VFLMD WWN A+EQQA DR+HR+GQ KP+ + R++I+ T+E+RI+K+Q K
Sbjct: 1102 LNLTMANYVFLMDTWWNEAIEQQAIDRVHRLGQNKPVYVTRYIIKGTVEKRIMKIQRSKT 1161
Query: 696 LVFEGTVGGSADAFGKLTEADMRFLF 721
+ ++ A + T AD++ +F
Sbjct: 1162 ALVNASLSNGAKT-KETTLADIKKIF 1186
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 37/169 (21%)
Query: 50 RGGILADEMGMGKTIQAIALVLAKREIR-----------GTIGELDASSSS--------- 89
RGGILAD MGMGKT +L+ RE + G GE+D +S
Sbjct: 516 RGGILADAMGMGKTCMMASLIHTNREEKPAGNLESQTRDGVEGEIDEEPASKRIKFKQVT 575
Query: 90 -STGLLGI----------KATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRER-- 136
S + +ATLV+CPV+ QW E+ + + GS +++G +R
Sbjct: 576 LSNQWRAVPTAPKVESFPRATLVVCPVSLAAQWHDELRKMSQQGSINSYVWYGGDRVDIE 635
Query: 137 ---SAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLV 182
+ D ++T+Y + ++Y+K + K + Y G S Y + +
Sbjct: 636 ALLAGDGKERVDVIVTSYGTLTSEYQKWLR-TKDRPNYEGGSLYDHEFL 683
>sp|P0CQ66|RAD5_CRYNJ DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=RAD5 PE=3
SV=1
Length = 1198
Score = 247 bits (630), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 174/560 (31%), Positives = 271/560 (48%), Gaps = 111/560 (19%)
Query: 231 KPSGGKSPLHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELY 290
+P+ L+ ++ RI+LDEAH I++R + +KA L+ +WAL+GTP+ NR+ +LY
Sbjct: 669 RPNYEGGSLYDHEFLRIVLDEAHNIRNRLAMVSKACYELKGQRRWALTGTPIVNRLEDLY 728
Query: 291 SLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPI--QTHGN 348
SL+ FL+ITP+ Y ++ +V P Q H
Sbjct: 729 SLLHFLRITPWGNY----------------------------SFFRSFVTVPFLNQDH-- 758
Query: 349 SYGGRRAMILLKHKVLRSVILRRTKKGRAAD----LALPPRIVSLRRDSLDIREADYYES 404
+A+ ++++ +L S +LRR K R D + LPP+ V ++ E Y+
Sbjct: 759 -----KALNVVQY-ILESCLLRREKTMRDKDGRLIVDLPPKTVEIKVLQFSRAERQIYKF 812
Query: 405 LYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSK-------------- 450
L ++ +F G M+NY I +L +LRQ VDHP LV+
Sbjct: 813 LEERAKKRFIDLDADGRAMSNYTSILAMLMKLRQCVDHPLLVLGKSGEDGELGEKILESG 872
Query: 451 ---------------TASLRGETEADAEHV--------------QQVCGLCNDLADDPVV 481
+R ET D + +C LC++ D V+
Sbjct: 873 AGNGEGNLRDMIAMYAGGIRAETPEDVDKAYAAKVLKELGEQEDTPICELCSNEMFDEVL 932
Query: 482 TNCGHAFCKACLFD----SSASKFVAKCPTCSI-PLTV-DFTANEGAGNRTSKTTI---- 531
C H C+ C+ + +A CP+C P+ + D + + R + T
Sbjct: 933 LPCYHRSCQDCIVEWIGTCEDQNKIASCPSCGKGPIKLADLRSVQRRHKRVNPITDAYPG 992
Query: 532 ---KGFKSSS----ILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLD 584
KSS+ L ++ L +STK+ AL ++ + + D AK +VFSQFTSFLD
Sbjct: 993 GRDPNLKSSNDTTVTLGKVDL---VTSTKLRALLRQLEEIRQEDPKAKALVFSQFTSFLD 1049
Query: 585 LINYSLHKSGVNCVQLVGSMSIPARDAAINRF---TEDPDCKIFLMSLKAGGVALNLTVA 641
LI +L K G+ ++ G+MS R I F T +P I L+SLKAGGV LNLT+A
Sbjct: 1050 LIEATLTKQGIRWLRFDGTMSQAQRANTIEEFGRKTNEP--LILLISLKAGGVGLNLTMA 1107
Query: 642 SHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGT 701
++VFLMD WWN A+EQQA DR+HR+GQ KP+ + R++I+ T+E+RI+K+Q K + +
Sbjct: 1108 NYVFLMDTWWNEAIEQQAIDRVHRLGQNKPVYVTRYIIKGTVEKRIMKIQRSKTALVNAS 1167
Query: 702 VGGSADAFGKLTEADMRFLF 721
+ A + T AD++ +F
Sbjct: 1168 LSNGAKT-KETTLADIKKIF 1186
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 37/169 (21%)
Query: 50 RGGILADEMGMGKTIQAIALVLAKREIR-----------GTIGELDASSSS--------- 89
RGGILAD MGMGKT +L+ RE + G GE+D +S
Sbjct: 516 RGGILADAMGMGKTCMMASLIHTNREEKPAGNLESQTRDGVEGEIDEEPASKRIKFKQVT 575
Query: 90 -STGLLGI----------KATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRER-- 136
S + +ATLV+CPV+ QW E+ + + GS +++G +R
Sbjct: 576 LSNQWRAVPTAPKVESFPRATLVVCPVSLAAQWHDELRKMSQQGSINSYVWYGGDRVDIE 635
Query: 137 ---SAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLV 182
+ D ++T+Y + ++Y+K + K + Y G S Y + +
Sbjct: 636 ALLAGDGKERVDVIVTSYGTLTSEYQKWLR-TKDRPNYEGGSLYDHEFL 683
>sp|Q6CJM4|RAD5_KLULA DNA repair protein RAD5 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RAD5 PE=3 SV=1
Length = 1114
Score = 243 bits (621), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 175/564 (31%), Positives = 272/564 (48%), Gaps = 115/564 (20%)
Query: 224 SSVGGVQKPSG--GKSPLHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTP 281
++ G +Q G S L ++ + RIILDE H I++R + T+KAV+AL SS KW L+GTP
Sbjct: 599 TTYGIIQSEYGRTSTSGLFNVVFFRIILDEGHTIRNRSTRTSKAVIALRSSRKWILTGTP 658
Query: 282 LQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVAT 341
+ NR+ +L+SLV+FL + P+S H +W RYV+
Sbjct: 659 IINRLDDLFSLVQFLNLEPWS----------------------------HINYWKRYVSV 690
Query: 342 PIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAAD----LALPPRIVSLRRDSLDIR 397
P + GN Y +I + VL V+LRRTK + D ++LPP+ V + + L
Sbjct: 691 PFEK-GN-YAQAFDVI---NAVLEPVLLRRTKNMKDVDGKPLVSLPPKEVIVEKLQLSSS 745
Query: 398 EADYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGE 457
E Y+S+ +++ + G ++ NY +I + RLRQ H L + KT L
Sbjct: 746 EKRVYQSMLEDAENSVKEGLAKGDLLKNYTNILVHILRLRQVCCH--LDLLKKTPDLGDP 803
Query: 458 TEADAEHVQQ-------------------------------------------VCGLCND 474
D E+ Q C +C
Sbjct: 804 DLEDLENSTQNISSILMPKNIKSPKSSISQDKLDALSANFRDIHSASEQLPSFECAICTT 863
Query: 475 LADDPV----VTNCGHAFCKACLFD----SSASKFVAKCPTCSIPLTVDFTANEGAGNRT 526
+P+ +T C H FC+ CL + K CP C +P++ A
Sbjct: 864 ECIEPLSAVSITECLHTFCEPCLAEYIEFQQNKKLSINCPYCRMPIS-------EANVLK 916
Query: 527 SKTTI---KGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFL 583
K I +G++ S + Q STKI+AL ++ + E + IVFSQF+SFL
Sbjct: 917 LKEPIDAERGYELISFHSHFQ------STKIKALLRHLKQIQETSPGEQIIVFSQFSSFL 970
Query: 584 DLINYSLH----KSGVNCVQLVGSMSIPARDAAINRFTE-DPDC-KIFLMSLKAGGVALN 637
D++ L + V + G + + R + +F + D C K+ L+SLK GGV LN
Sbjct: 971 DILEIELRSHLPRDQVIIYKFDGRLDMKERTRILEQFHDKDLSCIKLLLLSLKTGGVGLN 1030
Query: 638 LTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLV 697
LT AS F+MDPWW+P +E QA DRIHRIGQ + +++VRF+I+N++EE++L++QE+K+++
Sbjct: 1031 LTCASRAFMMDPWWSPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRML 1090
Query: 698 FEGTVGGSADAFGKLTEADMRFLF 721
+ G A+ K E +++ LF
Sbjct: 1091 GDIVEGDEAERRQKRIE-EIQMLF 1113
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 30/139 (21%)
Query: 46 ESAIRGGILADEMGMGKTIQAIALVLA---------------KREIRGTIGELDAS---- 86
++ I GGILADEMG+GKTI A+AL+ K ++ ++D+S
Sbjct: 474 KTIINGGILADEMGLGKTISALALICTASYDEAHEKKIESTKKPSMKEMSSQVDSSPLRH 533
Query: 87 SSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEF-- 144
S + TL++ P++ + QW SE + + IY+G+N K +
Sbjct: 534 SQHKHDTYAYRTTLIVVPMSLLNQWQSEFEKANKDLKKRCEIYYGNN----IKDLRAYVL 589
Query: 145 -----DFVITTYSIIEADY 158
+ITTY II+++Y
Sbjct: 590 GPNAPSVIITTYGIIQSEY 608
>sp|Q5BHD6|RAD5_EMENI DNA repair protein rad5 OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=rad5 PE=3 SV=1
Length = 1202
Score = 243 bits (620), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 176/574 (30%), Positives = 279/574 (48%), Gaps = 146/574 (25%)
Query: 239 LHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQI 298
L S+ + R+ILDEAH IK+RRS TA+A L+++++W L+GTP+ NR+ +L+SLVRFL++
Sbjct: 643 LFSVDFFRVILDEAHIIKNRRSKTARACYDLKATHRWVLTGTPIVNRLEDLFSLVRFLRV 702
Query: 299 TPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRAMIL 358
P++ +F +W ++ P + S RA+ +
Sbjct: 703 EPWN----------------------------NFSFWKTFITAPFE----SKEVVRAISV 730
Query: 359 LKHKVLRSVILRRTKKGRAAD----LALPPRIVSLRRDSLDIREADYYESLYSESQAQFN 414
++ VL ++LRRTK + + + LP R + + + L +E + Y +Y+ ++ FN
Sbjct: 731 VQ-TVLEPLVLRRTKSMKTPEGEPLVPLPKRTIRIEKVELIEQEREIYNHIYTRAKQTFN 789
Query: 415 TYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLV--------------VYSKTASLRGE--- 457
+ V AGT++ +Y+ IF L RLRQ HP L + + L+ +
Sbjct: 790 SNVAAGTLLKSYSTIFAQLLRLRQTCCHPILTRNKAIVADEEDAAAAADQDSDLKDDMDL 849
Query: 458 ---------TEADAEH---------------VQQV-------CGLCNDLAD-DPVVTNCG 485
T +DAE ++Q+ C +C++ DP VT C
Sbjct: 850 QELINRFTATTSDAESSNEPPDPSMKFTAHALRQIQTESAGECPICSEEPMIDPAVTACW 909
Query: 486 HAFCKACLFD----SSASKFVAKCPTCSIPLT-------VDFTANEGAGNRTSKTTIKG- 533
H+ CK CL D +C +C L V + + + ++I G
Sbjct: 910 HSACKGCLKDYIQHQRDKGVQPRCFSCRADLNPQDIFEVVRYQSPNTTPTEQTPSSIGGD 969
Query: 534 --FKSSSILN--RIQLDEF-------QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSF 582
+ SS RI L +S KI AL + +V K +VFSQFTSF
Sbjct: 970 NVYSSSQPPPPPRISLRRINPLSPSAHTSAKIHAL---LAHLVRVPAGTKSVVFSQFTSF 1026
Query: 583 LDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE---------------------DPD 621
LDLI L K+G++ V+L G+M+ AR + +FT+ P
Sbjct: 1027 LDLIGPQLTKAGISFVRLDGTMAQKARAEVLAQFTKFETFTQEELDQAESTSAPSGLTPT 1086
Query: 622 CK------------IFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQY 669
K + L+SLKAGGV LNLT AS+VF+MDPWW+ A+E QA DR+HR+GQ
Sbjct: 1087 PKTPKQSSSPSSPTVLLISLKAGGVGLNLTAASNVFMMDPWWSFAIEAQAIDRVHRMGQL 1146
Query: 670 KPIRIVRFLIENTIEERILKLQEKKKLVFEGTVG 703
+ + +VRF+++++IEER+L++QE +K+ G++G
Sbjct: 1147 RDVNVVRFIVKDSIEERMLRVQE-RKMGIAGSLG 1179
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 73/131 (55%), Gaps = 7/131 (5%)
Query: 38 LAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIK 97
L+ +E GGILADEMG+GKTI+ ++LV + R + T + + +G++
Sbjct: 499 LSLDFPAQEQHCLGGILADEMGLGKTIEMLSLVHSHRNLPPTQSLGNLTRLPVSGVVPAP 558
Query: 98 -ATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRER------SAKQFSEFDFVITT 150
TLV+ P++ + QW E + + GS KVL+Y+G+ + SA + + ++T+
Sbjct: 559 YTTLVVAPMSLLAQWEGEALKASRNGSMKVLMYYGNEKNVNLREMCSAGNAAAPNMILTS 618
Query: 151 YSIIEADYRKH 161
Y ++ +++R H
Sbjct: 619 YGVVMSEHRTH 629
>sp|Q4WVM1|RAD5_ASPFU DNA repair protein rad5 OS=Neosartorya fumigata (strain ATCC MYA-4609
/ Af293 / CBS 101355 / FGSC A1100) GN=rad5 PE=3 SV=2
Length = 1245
Score = 241 bits (614), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 173/589 (29%), Positives = 284/589 (48%), Gaps = 143/589 (24%)
Query: 239 LHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQI 298
L S+ + R+ILDEAH IK+RRS TA+A L ++++W L+GTP+ NR+ +L+SLVRFLQ+
Sbjct: 693 LFSVDFFRVILDEAHVIKNRRSKTARACYELRATHRWVLTGTPIVNRLEDLFSLVRFLQV 752
Query: 299 TPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRAMIL 358
P++ +F +W ++ P + S RA+ +
Sbjct: 753 EPWN----------------------------NFSFWKTFITVPFE----SKDYVRALNV 780
Query: 359 LKHKVLRSVILRRTKKGRAAD----LALPPRIVSLRRDSLDIREADYYESLYSESQAQFN 414
++ VL ++LRRTK + + + LP R + + L +E + Y+ +++ ++ FN
Sbjct: 781 VQ-TVLEPLVLRRTKTMKTPEGEPLVPLPRRTIDIVEVELSEQEREIYDYIFTRAKRTFN 839
Query: 415 TYVQAGTVMNNYAHIFDLLTRLRQAVDHPYL----------------------------- 445
++AGT++ +++ IF + RLRQ HP L
Sbjct: 840 DNIEAGTLLKSFSTIFAQILRLRQTCCHPILTRNKTIVADEEDAAATADAANELKDDMDL 899
Query: 446 --VVYSKTASLRGETEADAEH---------VQQV-------CGLCNDLAD-DPVVTNCGH 486
++ +AS+ A+A+ ++Q+ C +C++ DP VT C H
Sbjct: 900 QELIDRFSASMENADTAEAQDPSAKFTTHALRQIQTESSGECPICSEEPMIDPAVTACWH 959
Query: 487 AFCKACLFD----SSASKFVAKCPTCSIPLT----VDFTANEGAGNRTSKTTIKGFKSSS 538
+ CK CL D + +C +C P+T ++ + ++T + +S
Sbjct: 960 SACKKCLEDYIRHQTDKGVPPRCFSCRAPVTSRDIFQVIRHQSPSSTPTETDLYSSTPAS 1019
Query: 539 ILN---RIQLDEFQ-------SSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINY 588
+ RI L +S KI AL I + + K +VFSQFTSFLDLI
Sbjct: 1020 SPHPAPRISLRRIHPLSPSAHTSAKIHAL---INHLNRVPANTKSVVFSQFTSFLDLIGA 1076
Query: 589 SLHKSGVNCVQLVGSMSIPARDAAINRFT-------------EDPDCK------------ 623
L K+G++ V+L G+M AR + F E PD
Sbjct: 1077 QLTKAGISYVRLDGTMPQKARAEVLAEFNRTETFHQEEIDEDEGPDTPRVRISSKNSRSS 1136
Query: 624 -----IFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFL 678
+ L+SL+AGGV LNLT AS+VF+MDPWW+ A+E QA DR+HR+GQ + + + RF+
Sbjct: 1137 PKSPAVLLISLRAGGVGLNLTAASNVFMMDPWWSFAIEAQAIDRVHRMGQLRDVSVTRFI 1196
Query: 679 IENTIEERILKLQEKKKLVFEGTVG------GSADAFGKLTEADMRFLF 721
++++IE R+L++QE +K+ G++G GS D K +++ LF
Sbjct: 1197 VKDSIEGRMLRVQE-RKMNIAGSLGLRVGGDGSEDEKRKERIEELKLLF 1244
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 75/139 (53%), Gaps = 13/139 (9%)
Query: 38 LAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDAS-------SSSS 90
L+ +E GGILADEMG+GKTI+ ++L+ + R + + +S SSSS
Sbjct: 546 LSLDFPAQEQHCLGGILADEMGLGKTIEMLSLIHSHRNVSPSRQGPSSSTELVRMPSSSS 605
Query: 91 TGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRER------SAKQFSEF 144
L TLV+ P + ++QW SE + + G+ KVL+Y+G ++ SA +
Sbjct: 606 AILPAPNTTLVVAPTSLLSQWESEAMKASEQGTMKVLMYYGVDKSTNLQELCSAGNPAAP 665
Query: 145 DFVITTYSIIEADYRKHVM 163
+ +IT+Y ++ ++ R+ M
Sbjct: 666 NIIITSYGVVLSESRQLAM 684
>sp|O13762|YF2C_SCHPO Uncharacterized ATP-dependent helicase C17A2.12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC17A2.12 PE=3 SV=1
Length = 897
Score = 239 bits (609), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 165/541 (30%), Positives = 260/541 (48%), Gaps = 101/541 (18%)
Query: 244 WERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSY 303
W RI+LDEAH I++R + AK + L++ Y+W LSGTP+QN + E YSL++FL+I PY
Sbjct: 391 WYRIVLDEAHTIRNRDTLAAKCCVKLDAKYRWCLSGTPIQNHIDEFYSLLKFLRIKPYCV 450
Query: 304 Y--FCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSY---GGRRAMIL 358
+ F KD ++ P++++ +R IL
Sbjct: 451 WSLFAKD------------------------------ISRPLKSYRADIVEAALKRLRIL 480
Query: 359 LKHKVLRSVILRRTKKGRAADLA---LPPRIVSLRRDSLDIREADYYESLYSESQAQFNT 415
L S + RRTK+ R +L LPP+ + +L E Y S +Q+ +
Sbjct: 481 LA-----STVFRRTKETRVNNLPIVNLPPKTIRTVSVNLLPEERALYNEQMSSAQSLVDN 535
Query: 416 YVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEA-DAEHVQQVC----- 469
Y ++ Y + L RLRQ HP+LV K++SL D+E+V+ C
Sbjct: 536 YFNNDHDLSRYGFLLVSLLRLRQFCCHPWLV---KSSSLDNSFRIRDSENVRNACKSLDP 592
Query: 470 --------------GLCNDLADDPV-VTNCGHAFCKACLF--------DSSASKFVAKCP 506
+C D PV + CGH C+ C+ SS S +AKCP
Sbjct: 593 LTIERIATLQDFNCSVCLDPCLAPVFIIPCGHFTCQECMSMLVGQKYGSSSTSTIIAKCP 652
Query: 507 TCSIPLTVD-------FTANEGAGNRTSKTTIKGFKSSSILNRIQL-------------- 545
C + D A G N + + +S S I+L
Sbjct: 653 MCRGNIVQDSLVDATILQAIHGPLNSLKQLELDMNQSFSEQESIKLRWENRIDQMFTKKF 712
Query: 546 ----DEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLV 601
E++SS+K+ R+ I ++ + K +V+SQF+ +L L+++ L + V+
Sbjct: 713 GKRASEWKSSSKLNQARQTILDIIGSKRNEKILVYSQFSQYLCLVSHMLKLENIRHVRYD 772
Query: 602 GSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQD 661
G+MS R +++ F D D + L+SLKAG V LNLT+A+HV L +P++NP++E QA D
Sbjct: 773 GTMSANQRQKSLHSFNNDKDVLVMLVSLKAGSVGLNLTIANHVILQEPFYNPSIEDQAID 832
Query: 662 RIHRIGQYKPIRIVRFLIENTIEERILKLQEKKK-LVFEGTVGGSADAFGKLTEADMRFL 720
R+HR+GQ KP+ + RF+ ++TIEERI+ +Q KK+ LV E + +L + ++ +L
Sbjct: 833 RVHRLGQQKPVTVYRFITKDTIEERIVSVQRKKRQLVKEALDSNENNPLSRLDKEELLYL 892
Query: 721 F 721
F
Sbjct: 893 F 893
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 86/161 (53%), Gaps = 27/161 (16%)
Query: 5 DDVDLDQQNAFMTETAEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTI 64
D +DL +N + L+ LL +Q E AW E+S+ GG++AD+MG+GKTI
Sbjct: 230 DTIDLQLKNEQVQSAG-----LLVSLLPHQVEGHAWMESMEQSSKCGGVMADDMGLGKTI 284
Query: 65 QAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGST 124
Q IAL+L ++ S L K L++ VA + QW E++ T V +
Sbjct: 285 QTIALLLTQK--------------SQDPLR--KTNLIVVSVALLHQWAEELS--TKVHPS 326
Query: 125 K---VLIYHGSNRER-SAKQFSEFDFVITTYSIIEADYRKH 161
K V I+HGS ++ + + S++D V+TTYS++ + +++
Sbjct: 327 KKLSVYIHHGSTKKNLDSYELSQYDVVLTTYSMLAYEMKQN 367
>sp|Q9UNY4|TTF2_HUMAN Transcription termination factor 2 OS=Homo sapiens GN=TTF2 PE=1 SV=2
Length = 1162
Score = 237 bits (605), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 204/717 (28%), Positives = 314/717 (43%), Gaps = 125/717 (17%)
Query: 17 TETAEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREI 76
T AEDP L PLL +QK+ LAW L +E +GGILAD+MG+GKT+ IAL+L ++
Sbjct: 557 TVVAEDPAGLKVPLLLHQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQ 616
Query: 77 RGTIGELDAS-----SSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHG 131
+ ++ S + TL+ICP + LI+H
Sbjct: 617 EKKEEKEKSTALTWLSKDDSCDFTSHGTLIICPAS--------------------LIHHW 656
Query: 132 SNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHLKYFCGP 191
N K+ + + Y D R V+ S Y +V Y
Sbjct: 657 KNE--VEKRVNSNKLRVYLYHGPNRDSRARVL-----------STYD---IVITTYSLVA 700
Query: 192 SAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDE 251
+ T KQ + PG + G +PL + W RIILDE
Sbjct: 701 KEIPTNKQEAE------------IPGANLNVE----------GTSTPLLRIAWARIILDE 738
Query: 252 AHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDC 311
AH +K+ R T+ AV L++ +WA++GTP+QN + ++YSL++FL+ +P+
Sbjct: 739 AHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFD--------- 789
Query: 312 KVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRAMILLKHKVLRSVILRR 371
F W V +G+ GG R IL K S++LRR
Sbjct: 790 -------------------EFNLWRSQV-----DNGSKKGGERLSILTK-----SLLLRR 820
Query: 372 TKK-----GRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTVMNNY 426
TK GR + LP R L L E Y ++ S++ +Y++ N
Sbjct: 821 TKDQLDSTGRPL-VILPQRKFQLHHLKLSEDEETVYNVFFARSRSALQSYLKRHESRGNQ 879
Query: 427 AHIFDLLTRLRQAVDHPYLVVYSKTAS--LRGETEADAEHVQQVCGLCNDLADDPVVTNC 484
+ ++ ++P+ V + S R AD+ V L L + C
Sbjct: 880 SG---------RSPNNPFSRVALEFGSEEPRHSEAADSPRSSTVHILSQLLR----LRQC 926
Query: 485 GHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQ 544
C L S+ K + L +A + R S+ + + +
Sbjct: 927 ---CCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSSTVSLNGTFFKMEL 983
Query: 545 LDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSM 604
+ + STKI +L E+ + S K ++ SQ+T+ L ++ L K G+ + GS+
Sbjct: 984 FEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSV 1043
Query: 605 SIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIH 664
+ R + F ++ L+SL AGGV LNLT +H+FL+D WNP++E QA DRI+
Sbjct: 1044 NPKQRMDLVEAFNHSRGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIY 1103
Query: 665 RIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLF 721
R+GQ K + I RF+ E T+EE+IL+LQEKKK + + + GS ++ KLT AD+R LF
Sbjct: 1104 RVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSGESVTKLTLADLRVLF 1160
>sp|P32849|RAD5_YEAST DNA repair protein RAD5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD5 PE=1 SV=1
Length = 1169
Score = 236 bits (601), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 156/525 (29%), Positives = 259/525 (49%), Gaps = 105/525 (20%)
Query: 237 SPLHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFL 296
S L S+ + RII+DE H I++R + T+KAV+AL+ KW L+GTP+ NR+ +LYSLV+FL
Sbjct: 668 SGLFSVNFYRIIIDEGHNIRNRTTVTSKAVMALQGKCKWVLTGTPIINRLDDLYSLVKFL 727
Query: 297 QITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRAM 356
++ P+ R +W +V+TP + S ++A
Sbjct: 728 ELDPW----------------------------RQINYWKTFVSTPFE----SKNYKQAF 755
Query: 357 ILLKHKVLRSVILRRTKKGRAAD----LALPPRIVSLRRDSLDIREADYYESLYSESQAQ 412
++ + +L V+LRRTK+ + D + LPP+ V ++R + Y+ L +++
Sbjct: 756 DVV-NAILEPVLLRRTKQMKDKDGKPLVELPPKEVVIKRLPFSKSQDLLYKFLLDKAEVS 814
Query: 413 FNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLV--------VYSKTASLRGETEADAEH 464
+ + G ++ Y+ I + RLRQ HP L+ SK L E + +
Sbjct: 815 VKSGIARGDLLKKYSTILVHILRLRQVCCHPGLIGSQDENDEDLSKNNKLVTEQTVELDS 874
Query: 465 VQQV-----------------------------------CGLCN----DLADDPVVTNCG 485
+ +V C +C DL D + T CG
Sbjct: 875 LMRVVSERFDNSFSKEELDAMIQRLKVKYPDNKSFQSLECSICTTEPMDL-DKALFTECG 933
Query: 486 HAFCKACLFD----SSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILN 541
H+FC+ CLF+ ++ KCP C + N SK FK S +
Sbjct: 934 HSFCEKCLFEYIEFQNSKNLGLKCPNCRNQIDACRLLALVQTNSNSKNL--EFKPYSPAS 991
Query: 542 RIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLI----NYSLHKSGVNC 597
+ S+KI AL +E++ + + + ++FSQF+++LD++ ++ K
Sbjct: 992 K--------SSKITALLKELQLLQDSSAGEQVVIFSQFSTYLDILEKELTHTFSKDVAKI 1043
Query: 598 VQLVGSMSIPARDAAINRFT--EDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAV 655
+ G +S+ R + + F + KI L+SLKAGGV LNLT ASH ++MDPWW+P++
Sbjct: 1044 YKFDGRLSLKERTSVLADFAVKDYSRQKILLLSLKAGGVGLNLTCASHAYMMDPWWSPSM 1103
Query: 656 EQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEG 700
E QA DR+HRIGQ ++++RF+I+++IEE++L++QEKK+ + E
Sbjct: 1104 EDQAIDRLHRIGQTNSVKVMRFIIQDSIEEKMLRIQEKKRTIGEA 1148
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 17/133 (12%)
Query: 46 ESAIRGGILADEMGMGKTIQAIALVLA-------------KREIRGTIGELDASSSSSTG 92
++ I+GGIL+DEMG+GKT+ A +LVL+ E L ++ +
Sbjct: 522 KTMIKGGILSDEMGLGKTVAAYSLVLSCPHDSDVVDKKLFDIENTAVSDNLPSTWQDNKK 581
Query: 93 LLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSN----RERSAKQFSEFDFVI 148
K TL++ P++ +TQW +E + + +Y+G N + K + V+
Sbjct: 582 PYASKTTLIVVPMSLLTQWSNEFTKANNSPDMYHEVYYGGNVSSLKTLLTKTKTPPTVVL 641
Query: 149 TTYSIIEADYRKH 161
TTY I++ ++ KH
Sbjct: 642 TTYGIVQNEWTKH 654
>sp|Q7S1P9|RAD5_NEUCR DNA repair protein rad-5 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rad-5
PE=3 SV=2
Length = 1222
Score = 234 bits (598), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 164/536 (30%), Positives = 261/536 (48%), Gaps = 105/536 (19%)
Query: 219 KNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALS 278
KNG + S G L SL + R+ILDEAH IK+R++ T++A + + ++W L+
Sbjct: 708 KNGDRLSSRG----------LFSLNFFRVILDEAHNIKNRQAKTSRACYEIAAEHRWVLT 757
Query: 279 GTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRY 338
GTP+ NR+ +L+SLVRFL++ P++ +F +W +
Sbjct: 758 GTPIVNRLEDLFSLVRFLRVEPWN----------------------------NFSFWRTF 789
Query: 339 VATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAAD----LALPPRIVSLRRDSL 394
+ P + S RA+ +++ VL +++RRTK + D + LPP+ + + L
Sbjct: 790 ITVPFE----SKNFVRALDVVQ-TVLEPLVMRRTKDMKTPDGQFLVPLPPKHIEIVDIEL 844
Query: 395 DIREADYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASL 454
E Y+ +++ ++ +QAGTVM + IF + RLRQ+ HP LV + L
Sbjct: 845 SEPERAVYDYVFNRAKRTLFDNMQAGTVMKAFTSIFAQILRLRQSCCHPVLVRNQEI--L 902
Query: 455 RGETEADAEHVQQVCGLCNDL--------------------------------------- 475
E EA+ GL +D+
Sbjct: 903 ADEEEANMA-ADVAAGLADDMDLQTLIERFTATTDDASKTNNNFGAHVLRQIRDEAVNEC 961
Query: 476 ---ADDPV----VTNCGHAFCKACLFD----SSASKFVAKCPTCSIPLTVD--FTANEGA 522
A++P+ VT C H+ CK CL D + V +C C + + F
Sbjct: 962 PICAEEPMIDQAVTGCWHSACKKCLLDYIKHQTDRNEVPRCFQCREHINIRDIFEVIRHD 1021
Query: 523 GNRTSKTTIKGFKSSSI-LNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTS 581
+ + +T I L R+ ++ SS KI AL +R + + K +V SQFTS
Sbjct: 1022 DDLETSSTPGASPEPRISLQRVGAND--SSAKIVALISHLRTLRQEHPKMKSLVISQFTS 1079
Query: 582 FLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVA 641
FL LI+ +L + ++ ++L GSMS AR A + F + L+SLKAGGV LNLT A
Sbjct: 1080 FLSLISSALTRHKISFLRLDGSMSQKARAAVLTEFQSTNKFCVLLLSLKAGGVGLNLTSA 1139
Query: 642 SHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLV 697
V++MDPWW+ AVE QA DR+HR+GQ +R+ RF+++ ++E R+L++QE+KK +
Sbjct: 1140 KRVYMMDPWWSFAVEAQAIDRVHRMGQEDEVRVYRFIVKQSVEMRMLRVQERKKFI 1195
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 20/135 (14%)
Query: 43 KQEESAIRGGILADEMGMGKTIQAIALV--------LAKREIRGT----IGELDASSSSS 90
KQE+ + GGILADEMG+GKTIQ ++L+ + RE T + L S
Sbjct: 569 KQEQHCL-GGILADEMGLGKTIQMLSLIHSHRSEVAIKAREAGPTSVNNLPRLPTVSGQK 627
Query: 91 TGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERS-------AKQFSE 143
T + TLV+ P++ + QW SE + G+ K ++Y+G+ + A +
Sbjct: 628 TTIDAPCTTLVVAPMSLLAQWQSEAENASKEGTFKTMMYYGAEKNVDLVTMCCEANAANA 687
Query: 144 FDFVITTYSIIEADY 158
D +IT+Y ++ +++
Sbjct: 688 PDVIITSYGVVLSEF 702
>sp|Q5ACX1|RAD5_CANAL DNA repair protein RAD5 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=RAD5 PE=3 SV=1
Length = 1084
Score = 230 bits (587), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 163/528 (30%), Positives = 255/528 (48%), Gaps = 105/528 (19%)
Query: 233 SGGKSP---LHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGEL 289
S G+ P L+S+K+ RIILDE H I++R + TAK+V L+SS KW L+GTP+ NR+ +L
Sbjct: 574 SKGELPKVGLYSVKFFRIILDEGHNIRNRNTKTAKSVYELQSSRKWILTGTPIVNRLDDL 633
Query: 290 YSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNS 349
YSL +FL++ P++ +F +W +V P + S
Sbjct: 634 YSLTKFLELDPWN----------------------------NFSYWKTFVTLPFEQKKIS 665
Query: 350 YGGRRAMILLKHKVLRSVILRRTK---KGRAADLALPPRIVSLRRDSLDIREADYYESLY 406
+ + ++K +L + LRRTK K + LP + V + + + E Y+
Sbjct: 666 ----QTLDVVK-SILEPIFLRRTKSQKKNGKPLVELPAKEVVIEQIKFNDDEEKLYQWFK 720
Query: 407 SESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLV-------------------- 446
+ A F +++G ++ Y I + RLRQ H L+
Sbjct: 721 DRAYASFAEGIKSGQLLRRYTQILTHILRLRQVCCHVDLIGGAHEMDDEIIEAEQDEDMR 780
Query: 447 ------------------VYSKTASLRGETEADAEHVQQVCGLCNDLA---DDPVVTNCG 485
V K +L G+ + + E C +C + + VVT C
Sbjct: 781 KFLTSIKENQIRFANDTDVKEKMYNLYGKIKEENE-----CSICTQVPIPYSEMVVTPCA 835
Query: 486 HAFCKACLFDS-SASKFVAK---CPTCSIPLT----VDFTANEGAGNRTSKTTIKGFKSS 537
H FC +C+ + K + K CP C P++ GN T K
Sbjct: 836 HTFCLSCILEHLDFQKELKKEKLCPNCRSPISKYQLFRIRNQPTKGNEIRFHTQKDAPDY 895
Query: 538 SILNRIQL---DEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSG 594
S QL D +SS+KI+AL ++ + + ++K IVFSQF+S+LD+I L +
Sbjct: 896 SF----QLYLYDPNRSSSKIQALVRHLKALHSQSPNSKVIVFSQFSSYLDIIQSELKLAS 951
Query: 595 VNCV--QLVGSMSIPARDAAINRFT---EDPDCKIFLMSLKAGGVALNLTVASHVFLMDP 649
+ + G +++ R + F ED I L+SLKAGGV LNLT AS ++MDP
Sbjct: 952 EEFIVFKFDGRLNMNDRTKLLESFNQPLEDGKVAILLLSLKAGGVGLNLTTASRAYMMDP 1011
Query: 650 WWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLV 697
WW+P++E QA DRIHRIGQ + +++VRF++EN+IE ++LK+QE+KK +
Sbjct: 1012 WWSPSIEDQAIDRIHRIGQNETVKVVRFIMENSIETKMLKIQERKKQI 1059
Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 46 ESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV 105
+S++RGGILADEMG+GKTI +ALV ++ + S + TL++ P+
Sbjct: 453 KSSLRGGILADEMGLGKTIATLALV-------NSVPYDNFPEPKSDRPYASQTTLIVVPM 505
Query: 106 AAVTQWVSEINRFTSVGSTKVLIYHGSNRE 135
+ + QW SE + + +++G ++E
Sbjct: 506 SLLFQWKSEFEKCNNNSRHVCRLHYGEDQE 535
>sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 1
OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1
Length = 881
Score = 230 bits (586), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 150/478 (31%), Positives = 236/478 (49%), Gaps = 68/478 (14%)
Query: 237 SPLHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFL 296
SP+ ++W RIILDEAH IK+ + ++ V L++S +WA++GTP+QN +LYSL+ FL
Sbjct: 424 SPVKKMEWLRIILDEAHTIKNANAQQSRVVCKLKASRRWAVTGTPIQNGSFDLYSLMAFL 483
Query: 297 QITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRAM 356
+ P+S +W + P+ GN G R
Sbjct: 484 RFEPFSIK----------------------------SYWQSLIQRPL-GQGNKKGLSRLQ 514
Query: 357 ILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTY 416
+L+ ++ LRRTK+ + + LPP+ V L E Y+ + E++
Sbjct: 515 VLMA-----TISLRRTKE--KSLIGLPPKTVETCYVELSPEERQLYDHMEGEAKGVVQNL 567
Query: 417 VQAGTVMNNYAHIFDLLTRLRQAVDH-----PYLVVYSKTASLRGETEADAEHVQQV--- 468
+ G++M NY+ + ++ RLRQ D P L ++ + S+ T+ E +Q++
Sbjct: 568 INNGSLMRNYSTVLSIILRLRQLCDDMSLCPPELRSFTTSTSVEDVTDK-PELLQKLVAA 626
Query: 469 --------CGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANE 520
C +C + ++T C H FC+AC+ + + CP C LT N
Sbjct: 627 LQDGEDFDCPICISPPTNIIITRCAHIFCRACIL-QTLQRSKPLCPLCRGSLTQSDLYNA 685
Query: 521 GAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFT 580
S T G + S ++ S + A R+E + + K +VFSQF
Sbjct: 686 PPPPPDSSNT-DGEDAKSSTKSSKVSALLS--LLMASRQE-------NPNTKSVVFSQFR 735
Query: 581 SFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCK---IFLMSLKAGGVALN 637
L L+ L +G ++L G+M++ R I F +P+ + L SLKA G +N
Sbjct: 736 KMLLLLETPLKAAGFTILRLDGAMTVKKRTQVIGEFG-NPELTGPVVLLASLKASGTGIN 794
Query: 638 LTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKK 695
LT AS V+L DPWWNPAVE+QA DRIHRIGQ + ++++R + N+IEER+L+LQ+KKK
Sbjct: 795 LTAASRVYLFDPWWNPAVEEQAMDRIHRIGQKQEVKMIRMIARNSIEERVLELQQKKK 852
Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 86/199 (43%), Gaps = 61/199 (30%)
Query: 20 AEDPPDLI-TPLLRYQKEWLAWALKQEESA----------------------------IR 50
AE P ++I + L +QKE L W L +E+S +R
Sbjct: 220 AEPPREVIKSELFAHQKEGLGWLLHREKSGELPPFWEEKDGEFLNTLTNYRSDKRPDPLR 279
Query: 51 GGILADEMGMGKTIQAIALVLAKREIRGTI---------GELD------------ASSSS 89
GG+ AD+MG+GKT+ ++L+ R + GE D SS S
Sbjct: 280 GGVFADDMGLGKTLTLLSLIAFDRYGNASTSTPTEEPLDGEGDKIEKKGKKRGRGKSSES 339
Query: 90 ST-------GLLGI----KATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSA 138
T ++G+ K TL++CP + ++ W++++ T G KV +YHG R
Sbjct: 340 VTRKKLKTDDVVGMNVSQKTTLIVCPPSVISAWITQLEEHTVPGILKVYMYHGGERTDDV 399
Query: 139 KQFSEFDFVITTYSIIEAD 157
+ ++D V+TTY + +
Sbjct: 400 NELMKYDIVLTTYGTLAVE 418
>sp|Q753V5|RAD5_ASHGO DNA repair protein RAD5 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=RAD5 PE=3 SV=2
Length = 1085
Score = 226 bits (577), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 155/520 (29%), Positives = 251/520 (48%), Gaps = 107/520 (20%)
Query: 239 LHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQI 298
L S+++ RIILDE H I++R + T+KAV+AL S KW L+GTP+ NR+ +L+SL++F+
Sbjct: 592 LFSVEFFRIILDEGHNIRNRTTKTSKAVMALTSRRKWVLTGTPIMNRLDDLFSLIKFMNF 651
Query: 299 TPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRAMIL 358
P+ CK+ DY W ++V+ P + S + +
Sbjct: 652 EPW---------CKI-DY------------------WRQFVSDPFEKKDYS-----SALE 678
Query: 359 LKHKVLRSVILRRTKKGRAAD----LALPPRIVSLRRDSLDIREADYYESLYSESQAQFN 414
+ V+ ++LRRTK + D + LPP+ V + EA Y+ S+++
Sbjct: 679 VIQAVMGPILLRRTKNMKDEDGNPLVQLPPKEVVIEMIRFSDTEAGLYKYFLSKAEHSVK 738
Query: 415 TYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLV-----------------VYSKTASLRGE 457
+ G ++ Y+ I + RLRQ H L+ ++L GE
Sbjct: 739 ESLARGDLLKKYSTILLHILRLRQVCCHFKLLGSQDENDEDLKNMKLINDIPDISTLLGE 798
Query: 458 --------TEADAEHVQQV--------------CGLCNDLADDP----VVTNCGHAFCKA 491
+E + ++ C +C A P V T CGH FC++
Sbjct: 799 DSQSPGSSSEGMPDFIEDFKTKYPNSDALKDLECSICTCEAISPLTSVVFTRCGHPFCES 858
Query: 492 CLFD------SSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQL 545
CL + S+ + CP C + S+ +K + L +
Sbjct: 859 CLLEYIQFQNKKGSETI--CPNCRAAVE-------------SRYLLKLEDINGKLEPVPY 903
Query: 546 DEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCV----QLV 601
+ S+KI AL ++ + + + + +VFSQF+S+LD++ L +S + + +
Sbjct: 904 SNTKKSSKIVALIRHLKHLQDTSANEQVVVFSQFSSYLDILENELRQSFASDICEIYKFD 963
Query: 602 GSMSIPARDAAINRFTEDP--DCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQA 659
G + + R + +FTE K+ L+SLKAGGV LNLT ASH F+MDPWW+P +E QA
Sbjct: 964 GRLDLKERSNVLAKFTEKSLVKMKVLLLSLKAGGVGLNLTCASHAFIMDPWWSPGMEDQA 1023
Query: 660 QDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFE 699
DRIHRIGQ ++I RF++EN+IEE++L++QEKK+ + E
Sbjct: 1024 MDRIHRIGQSNTVKIYRFIVENSIEEKMLRIQEKKRSLGE 1063
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 23/134 (17%)
Query: 46 ESAIRGGILADEMGMGKTIQAIALV----------LAKREIRGTIGELDASSSSSTGLLG 95
+S ++GGILADEMG+GKTI +AL+ L + + +G L S G+
Sbjct: 450 KSILKGGILADEMGLGKTISILALITMVPSDTKHLLTTAQEKPPVGHL----SLELGIST 505
Query: 96 IK-----ATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSN----RERSAKQFSEFDF 146
+K TL++ P++ + QW +E R +Y+ N R KQ S
Sbjct: 506 VKPYTASTTLIVVPMSLLPQWRNEFVRVNDGNGLYCEVYYAGNVSNLRTLLVKQKSPPSV 565
Query: 147 VITTYSIIEADYRK 160
V+TTY +++ ++ K
Sbjct: 566 VLTTYGVVQTEWSK 579
>sp|Q6FY76|RAD5_CANGA DNA repair protein RAD5 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RAD5 PE=3 SV=1
Length = 1151
Score = 224 bits (572), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 146/529 (27%), Positives = 250/529 (47%), Gaps = 107/529 (20%)
Query: 234 GGKSPLHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLV 293
G S + S+++ RIILDE H I+++ + T+KAVL L S Y+W L+GTP+ NR+ +LYSLV
Sbjct: 646 GRTSGIFSIEFFRIILDEGHTIRNKSTITSKAVLELSSKYRWILTGTPIINRLDDLYSLV 705
Query: 294 RFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGR 353
+FL++ P+S +W +++ P + +
Sbjct: 706 KFLKLEPWS----------------------------QIGYWKQFITNPFEERN----FK 733
Query: 354 RAMILLKHKVLRSVILRRTKKGRAAD----LALPPRIVSLRRDSLDIREADYYESLYSES 409
+A ++ + ++ V+LRRTK+ + D + LPP+ + + + L ++ YE +
Sbjct: 734 QAFDVV-NAIMEPVLLRRTKQMKDTDGNPLVQLPPKEIVIEKLQLSKKQKLIYEEFLQRA 792
Query: 410 QAQFNTYVQAGTVMNNYAHIFDLLTRLRQAV-------------------DHPYLVVYSK 450
+ F + +Q+G ++ Y+ I + RLRQ ++ +
Sbjct: 793 EKTFRSGLQSGDLLKKYSTILVHILRLRQVCCDSNLIGTLDENDEDLSSGNNKLITESVD 852
Query: 451 TASLRGETEADAEHVQQV--------------------------CGLCNDL---ADDPVV 481
+L +TE + + V C +C + VV
Sbjct: 853 VKTLIPDTEEEEDEVPPFENDELDKLIESVEAKFIDSNQLIPVECSICTAEPIESSSAVV 912
Query: 482 TNCGHAFCKACLFD----SSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSS 537
T C H FCK CL + KCP C + ++ G S
Sbjct: 913 TECEHVFCKECLEEYGNFQKEKSLQQKCPNCRRDINLNRCLAFEKG------------SD 960
Query: 538 SILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK----S 593
IL I D + K+ AL ++ + + + +VFSQF+S+LD++ L++ +
Sbjct: 961 GILKLIHFDRKERPAKLNALIRHLQQLQDSSAGEQVVVFSQFSSYLDILESQLNEVYSSN 1020
Query: 594 GVNCVQLVGSMSIPARDAAINRFTEDPDC--KIFLMSLKAGGVALNLTVASHVFLMDPWW 651
+ + G +S+ R A + F K+ L+SLKAGGV LNLT AS+ F+MDPWW
Sbjct: 1021 KLKVYKFDGRLSLKERTAVLEDFKVKDYAVQKVLLLSLKAGGVGLNLTCASYAFMMDPWW 1080
Query: 652 NPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEG 700
+P++E QA DRIHRIGQ ++++RF+I+ +IEE++L++Q++K+ + E
Sbjct: 1081 SPSMEDQAIDRIHRIGQTNSVKVIRFVIDGSIEEKMLRIQDRKRTLGEA 1129
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 69/127 (54%), Gaps = 17/127 (13%)
Query: 51 GGILADEMGMGKTIQAIALVLAKREIRGTIGE----LDASSSSSTGLLGI---------K 97
GGIL+DEMG+GKTI A++LVL + + T + ++S+ SS ++ I K
Sbjct: 508 GGILSDEMGLGKTISALSLVLMRPKDEHTTSQSLFHQESSNLSSDDVIEIKEPERSYAYK 567
Query: 98 ATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSN----RERSAKQFSEFDFVITTYSI 153
TL+I P++ +TQW E ++ + +Y+G N + K+ + V+TTY I
Sbjct: 568 TTLIIVPMSLLTQWRDEFDKVNNNAGLTCELYYGGNVSSLKSLLIKRKNPPTVVLTTYGI 627
Query: 154 IEADYRK 160
++ ++ K
Sbjct: 628 VQNEWTK 634
>sp|Q6BIP2|RAD5_DEBHA DNA repair protein RAD5 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD5 PE=3
SV=2
Length = 1190
Score = 216 bits (550), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 154/558 (27%), Positives = 258/558 (46%), Gaps = 112/558 (20%)
Query: 239 LHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQI 298
L S+K+ RI+LDE H I++R + T+KA+ + S+ KW L+GTP+ NR+ +LYSLV+FL++
Sbjct: 667 LFSVKFFRIVLDEGHNIRNRTAKTSKAIYEILSNRKWVLTGTPVINRLDDLYSLVKFLEL 726
Query: 299 TPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRAMIL 358
P+S +F +W +V P + S + + +
Sbjct: 727 EPWS----------------------------NFSYWKTFVTLPFEQRKIS----QTLDV 754
Query: 359 LKHKVLRSVILRRTKKGRAAD----LALPPRIVSLRRDSLDIREADYYESLYSESQAQFN 414
+K +L + +RRTK + ++ + LPP+ V + + E Y + + F
Sbjct: 755 VK-SILEPIFIRRTKNMKQSNGKPLVELPPKEVVIEEVKFNEVEEKLYNWFKARASQSFK 813
Query: 415 TYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLV------------VYSKTASLRGETE--- 459
+++G + Y+ I + RLRQ H LV + + GE++
Sbjct: 814 DGIKSGDLFKKYSQILTHILRLRQVCCHVDLVGSANEMEQELVDPNTDLSEANGESDSIS 873
Query: 460 ----------ADAEHVQQV-----------------------CGLCNDLADDPV------ 480
AD H ++ C +C P+
Sbjct: 874 MVNNVLDSYHADNNHDEKFKNNTEVRSVMFPLYEKIDLKESECSIC---TQSPIPLGEMA 930
Query: 481 VTNCGHAFCKACLFD----SSASKFVAKCPTCSIPLT----VDFTANEGAGNRTSKTTIK 532
+T CGHA+C C+ + + CP C P++ + + T +
Sbjct: 931 LTPCGHAYCLNCVLEHFDFQEKNSQKPLCPNCREPISKYKIFKLRHRDTSVKEIRFHTKQ 990
Query: 533 GFKSSSILNRIQL---DEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYS 589
+ S + QL D ++S+KI+ L ++ + E+ + + +VFSQF+S+LD+I
Sbjct: 991 EMEDPSQNFKFQLYLYDPTKTSSKIQCLINHLKILKEQSPNEQVVVFSQFSSYLDIIENE 1050
Query: 590 LHKSGVN---CVQLVGSMSIPARDAAINRFT---EDPDCKIFLMSLKAGGVALNLTVASH 643
L N + G +++ R + F+ + I L+SLKAGGV LNLT AS
Sbjct: 1051 LKIQISNDFVVYKFDGRLNMNERQKILENFSSQKHENKVMILLLSLKAGGVGLNLTTASR 1110
Query: 644 VFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVG 703
F+MDPWW+P+VE QA DR+HRIGQ +++ RF++ ++IE ++LK+QE+KK + E VG
Sbjct: 1111 AFMMDPWWSPSVEDQAIDRLHRIGQNSNVKVTRFIMADSIETKMLKIQERKKQIGEA-VG 1169
Query: 704 GSADAFGKLTEADMRFLF 721
D K +M+ LF
Sbjct: 1170 AEEDERRKRRIEEMQILF 1187
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 47 SAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVA 106
S ++GGILADEMG+GKTI +AL+ + + + + K TL+I P++
Sbjct: 535 SMVKGGILADEMGLGKTISTLALI---NSVPIDVMFEENKELEDKTIYASKTTLIIVPMS 591
Query: 107 AVTQWVSEINRFTSVGSTKVLIYHG 131
++QW E ++ + + K IY+G
Sbjct: 592 LLSQWQKEFDKANNNSNHKCFIYYG 616
>sp|Q6C2R8|RAD5_YARLI DNA repair protein RAD5 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=RAD5 PE=3 SV=1
Length = 1025
Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 144/505 (28%), Positives = 236/505 (46%), Gaps = 92/505 (18%)
Query: 244 WERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSY 303
+ RI+LDEAH IK+R + +AKA L ++ KWAL+GTP+ NR+ +L+S+++FL P++
Sbjct: 552 FHRIVLDEAHVIKNRNTVSAKACCLLRATNKWALTGTPIHNRLEDLFSILKFLGAAPWN- 610
Query: 304 YFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRAMILLKHKV 363
F +W ++ P Q G + ++ +
Sbjct: 611 ---------------------------DFIYWRNFITLPFQE-----GKIVSALMTVQCI 638
Query: 364 LRSVILRRTKKGRAAD----LALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQA 419
L ++LRRTK + AD + LP + +++ + +L +E Y + + +Q +
Sbjct: 639 LEPIVLRRTKNMKQADGSPLVVLPKKTINIEKVALTDQERVIYSYVLARAQTSLQKSEAS 698
Query: 420 GTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGET--------------------- 458
V NY +I + RLRQ+ P L++ + E
Sbjct: 699 EAVGRNYLNILTQILRLRQSCCDPALILRPEAEVPTDEQLQIEENESQLKSMIQQYNDDT 758
Query: 459 -----EADAEHVQQV--------CGLCNDLADDPVVTNCGHAFCKACLFDS----SASKF 501
E +E + Q+ C +C + ++ C H C CL D+ + K
Sbjct: 759 QTSACEYSSEIIAQLQDQSAPPECPICAEDVTKLAISKCLHMGCVDCLADNVRFQESKKQ 818
Query: 502 VAKCPTCSIPLTV-DFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREE 560
C C P + D E G +K +L + S+K+ AL +
Sbjct: 819 TPVCCICRQPAALKDIFEVERTGEDCKDIRLK-----------KLSDRPRSSKLVALVSK 867
Query: 561 IRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDP 620
++ + + AK +VFSQFTS+LD+I L + + + G++S R + F
Sbjct: 868 LKQLPK---DAKSVVFSQFTSYLDIIQTELRREKIQAFRFDGTLSRQQRTDVLKAFGLSK 924
Query: 621 DCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIE 680
+ L+SLK GGV LNL A+H F+MDPWW A E QA DRIHR+GQ K + + RF++E
Sbjct: 925 G-SVLLISLKTGGVGLNLVTANHAFIMDPWWTFAQEAQAIDRIHRMGQTKDVHVTRFIVE 983
Query: 681 NTIEERILKLQEKKKLVFEGTVGGS 705
N++EE++LK+Q+ +K+V GT+G S
Sbjct: 984 NSVEEKMLKIQQ-QKMVLAGTLGMS 1007
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 27/124 (21%)
Query: 38 LAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIK 97
L ++E + GGILADEMG+GKTI +A+V R +
Sbjct: 422 LTLKFPKQERSFSGGILADEMGLGKTISTLAMVYRDRH--------------------VG 461
Query: 98 ATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQ-FSEF--DFVITTYSII 154
TLV+ P++ + QW E R VG + +YH + + F + + +IT+Y +
Sbjct: 462 CTLVVAPMSLLWQWEQECER---VGLS-TYVYHEKGADIDLDELFKTYSPNILITSYHTL 517
Query: 155 EADY 158
+ Y
Sbjct: 518 VSHY 521
>sp|Q08562|ULS1_YEAST ATP-dependent helicase ULS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ULS1 PE=1 SV=1
Length = 1619
Score = 209 bits (532), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 162/542 (29%), Positives = 246/542 (45%), Gaps = 97/542 (17%)
Query: 246 RIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYF 305
RI+LDE IK++ + +KA + Y+W LSGTP+QN + ELYSL+RFL+I PY
Sbjct: 1104 RILLDEGQNIKNKNTRASKACCTINGMYRWVLSGTPIQNSMDELYSLIRFLRIPPY---- 1159
Query: 306 CKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRAMILLKHKVLR 365
H R R+ Q ++ + A L K +VL
Sbjct: 1160 --------------------HKEQRFKLDIGRFFQRNKQYQYDNEDRKNA--LRKVRVLL 1197
Query: 366 SVILRRTKKGRAAD----LALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGT 421
+ I+ R K D L LPP+IV + L E +Y +L S++QA + T
Sbjct: 1198 NAIMLRRSKADKIDGKPLLELPPKIVEVDESRLKGEELKFYTALESKNQALAKKLLNNST 1257
Query: 422 VMNNYAHIFDLLTRLRQAVDHPYLVV------------------------YSKTASLRGE 457
+Y+ + LL RLRQA H LVV Y K + GE
Sbjct: 1258 -RGSYSSVLTLLLRLRQACCHSELVVMGEKKAEGTKVANGKSFEDDWLRLYYKITHMSGE 1316
Query: 458 TEAD--AEHVQQVCGLCNDLADDP---VVTNCGHAFCKACL--FDSSAS----------- 499
+A C C + + V+T CGH C C+ F +S
Sbjct: 1317 AQAQVITSMNSMTCFWCMEQLEPEAMSVLTGCGHLICDTCIEPFIEESSMLPQAKKTKGG 1376
Query: 500 KFVAKCPTCSIPLT----------VDFTANEGAGNRTSKTTIKGFKSSSILNRIQ----- 544
F C C LT D N+G T + + S +IQ
Sbjct: 1377 AFAIPCKDCQ-RLTNEKDIVSHKLYDQVINQGF---TEEDLHAEYLSEMEKQKIQQKNVY 1432
Query: 545 ---LDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSL-HKSGVNCVQL 600
+ + STKIE + I+ + + + K I+FSQFT+F +++ + L +K ++
Sbjct: 1433 VPNFESLEPSTKIEQCIQVIQRVFDESATEKIIIFSQFTTFFEILEHFLKNKLNFPYLKY 1492
Query: 601 VGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQ 660
+GSM+ R IN F DP+ +I L+S+KAG L LT A+HV ++DP+WNP VE+QAQ
Sbjct: 1493 IGSMNAQRRSDVINEFYRDPEKRILLISMKAGNSGLTLTCANHVVIVDPFWNPYVEEQAQ 1552
Query: 661 DRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVG-GSADAFGKLTEADMRF 719
DR +RI Q K +++ + I++++E+RI +LQ++KK + + + G L ++ F
Sbjct: 1553 DRCYRISQTKKVQVHKLFIKDSVEDRISELQKRKKEMVDSAMDPGKIKEVNSLGRRELGF 1612
Query: 720 LF 721
LF
Sbjct: 1613 LF 1614
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 19/157 (12%)
Query: 8 DLDQQNAFMTETAEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAI 67
++ Q + + A P D+ LL++Q+ L W L+ E SA +GG+LAD+MG+GKTIQAI
Sbjct: 921 NVKQSESIIDGEALTPEDMTVNLLKHQRLGLHWLLQVENSAKKGGLLADDMGLGKTIQAI 980
Query: 68 ALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEI-NRFTSVGSTKV 126
AL+LA R S S K L++ PV+ + W E+ +
Sbjct: 981 ALMLANR-----------SEESK-----CKTNLIVAPVSVLRVWKGELETKVKKRAKFTT 1024
Query: 127 LIYHGS--NRERSAKQFSEFDFVITTYSIIEADYRKH 161
I+ GS + + + + +D V+ +Y + +++KH
Sbjct: 1025 FIFGGSGNGKVKHWRDLARYDAVLVSYQTLANEFKKH 1061
>sp|P34739|TTF2_DROME Transcription termination factor 2 OS=Drosophila melanogaster GN=lds
PE=1 SV=2
Length = 1061
Score = 195 bits (496), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 172/592 (29%), Positives = 274/592 (46%), Gaps = 120/592 (20%)
Query: 188 FCGPSAVR---TEKQSKQEKKKMKSSVYEGYPGKKNGK--------KSSVGGVQKPSGGK 236
C S +R +E +SK ++K+ V+ G + GK ++ V +
Sbjct: 530 VCPASLLRQWESEVESKVSRQKLTVCVHHGNNRETKGKYLRDYDIVVTTYQIVAREHKSL 589
Query: 237 SPLHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFL 296
S + +KW RIILDEAH +++ +S ++ AV L Y+WAL+GTP+QN+ ++Y+L++FL
Sbjct: 590 SAVFGVKWRRIILDEAHVVRNHKSQSSLAVCDLRGKYRWALTGTPIQNKELDVYALLKFL 649
Query: 297 QITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRAM 356
+ +P+ W +++ S GG+ +
Sbjct: 650 RCSPFDDLHT----------------------------WKKWI------DNKSAGGQNRL 675
Query: 357 ILLKHKVLRSVILRRTKKGRAAD---LALPPRIVSLRRDSLDIREADYYESLYS------ 407
LL ++S++LRRTK +D +LP + + L SLD E + Y+++ +
Sbjct: 676 NLL----MKSLMLRRTKAQLQSDGKLNSLPNKELRLIEISLDKEEMNVYQTVMTYSRTLF 731
Query: 408 --------ESQAQFN--------TYVQ------------------AGTVMNNYAH-IFDL 432
E + FN TY Q AG+ +H I L
Sbjct: 732 AQFLHQRAERETDFNYRSDANKPTYNQIKDPNGAYYKMHEKFARMAGSKKEVKSHDILVL 791
Query: 433 LTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKAC 492
L RLRQ HP L+ A L GE Q G + +D P + K
Sbjct: 792 LLRLRQICCHPGLI----DAMLDGEES-------QTMGDHSSDSDTPEIDLLAQ-LNKLA 839
Query: 493 LFDSS--ASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQS 550
+ D+S + VA PL D E + SK +K +S+ + N +
Sbjct: 840 ITDTSTDGQQSVANAGDDGPPLLPD----EARIAKASKNLLK--RSNPVFNL-----HRP 888
Query: 551 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARD 610
S+KI + + ++ + + K IV SQ+TS LD++ L K GV + L G++ + R
Sbjct: 889 SSKINMVIQILKTSILKSSDDKAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPVKNRQ 948
Query: 611 AAINRFTEDPDCK-IFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQY 669
+N F + + K + L+SL AGGV LNL A+H+ L+D WNP +E QAQDRI+R+GQ
Sbjct: 949 DIVNEFNDRNNQKRVLLLSLTAGGVGLNLIGANHLLLLDLHWNPQLEAQAQDRIYRVGQK 1008
Query: 670 KPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLF 721
K + I +F+ +T+E+RI LQ+KK + +G + G A KLT D++ LF
Sbjct: 1009 KNVIIYKFMCVDTVEQRIKGLQDKKLDLADGVLTG-AKVSSKLTIDDLKGLF 1059
Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 80/162 (49%), Gaps = 25/162 (15%)
Query: 20 AEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLA------- 72
AEDP L L+ +QK LAW +E RGGILAD+MG+GKT+ I+ VLA
Sbjct: 429 AEDPVGLKVSLMNHQKHALAWMSWRERKLPRGGILADDMGLGKTLTMISSVLACKNGQEM 488
Query: 73 ---------------KREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINR 117
K + R ++ + T G TLV+CP + + QW SE+
Sbjct: 489 SEGKDESSDSDSEDDKNKKRKSVTGWKSKGRKDTRRGG---TLVVCPASLLRQWESEVES 545
Query: 118 FTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYR 159
S V ++HG+NRE K ++D V+TTY I+ +++
Sbjct: 546 KVSRQKLTVCVHHGNNRETKGKYLRDYDIVVTTYQIVAREHK 587
>sp|Q4PGG5|RAD5_USTMA DNA repair protein RAD5 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=RAD5 PE=3 SV=1
Length = 1387
Score = 139 bits (351), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 129/256 (50%), Gaps = 25/256 (9%)
Query: 484 CGHAFCKACLFD----SSASKFVAKCPTC---------------SIPLTVDFTANEGAGN 524
C H+ CKACL D CPTC + P T + +
Sbjct: 1125 CMHSACKACLVDYLGQCKQKGDQGACPTCRKGPVQETDLIEAIRTRPATRAASGGASPTD 1184
Query: 525 RTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLD 584
R K S I R + ++STK+ AL + + + + KG++FSQFTSFLD
Sbjct: 1185 RPGKACTLTSVPSVIYVR---NNLRTSTKLSALISHLNTLRATEAAFKGVIFSQFTSFLD 1241
Query: 585 LINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCK---IFLMSLKAGGVALNLTVA 641
LI L + + ++L GS RD + F +FL+SLKAGGV LNLT A
Sbjct: 1242 LIEPVLTRYRFHFLRLDGSTPQKVRDKLVLEFQSPSPTNHVVLFLISLKAGGVGLNLTAA 1301
Query: 642 SHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGT 701
+ ++L+D WWN ++E QA DRIHR GQ P+ + R++I+++IE+RIL +Q++K ++ +
Sbjct: 1302 NKIWLLDFWWNSSIENQAIDRIHRFGQTSPVSVFRYIIKDSIEDRILLIQKRKDMLIKHA 1361
Query: 702 VGGSADAFGKLTEADM 717
+ G ++M
Sbjct: 1362 LNTDNHPHGTKPNSEM 1377
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 113/215 (52%), Gaps = 38/215 (17%)
Query: 237 SPLHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFL 296
+PL+ + W R+ILDEAH IK+R + A+A L S +WAL+GTP+ NR+ +L+SL++FL
Sbjct: 818 APLYCIDWLRVILDEAHNIKNRSTMNARACCDLVSRRRWALTGTPIINRLTDLFSLLKFL 877
Query: 297 QITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRAM 356
++ P+ F ++N +V P Q +A+
Sbjct: 878 RVEPWG----------------------------DFSFFNSFVCKPFQAKST-----KAL 904
Query: 357 ILLKHKVLRSVILRRTKKGRAAD----LALPPRIVSLRRDSLDIREADYYESLYSESQAQ 412
+++ +L SV+LRR KK + D + LPP+ + ++ E Y+++Y + Q
Sbjct: 905 DVVQ-VILESVLLRREKKMKDKDGKPIVELPPKTIVVKELEFSELERRIYDNVYRRAYLQ 963
Query: 413 FNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVV 447
F + GTV N + IF +L RLRQAV HP LV+
Sbjct: 964 FASLKANGTVTRNLSVIFSVLMRLRQAVCHPSLVL 998
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 40/163 (24%)
Query: 38 LAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKR------EIRGTIGELDASSSS-S 90
L+ ++ RGGILADEMG+GKTI +L+ A R E G I +DA+ S
Sbjct: 640 LSLDFQRASKGSRGGILADEMGLGKTIMVASLLHANRTSDPGEESEGEINAVDAAEGDVS 699
Query: 91 TGLLGI-------------------------------KATLVICPVAAVTQWVSEINRFT 119
T G KA+LV+ P++ + QW E+ R +
Sbjct: 700 TKRKGSAKQTSLASAFAASTSSVDQRKALLKASVSKGKASLVVAPMSLIGQWRDELIRAS 759
Query: 120 SVGSTKVLIYHGSNRERSAKQF--SEFDFVITTYSIIEADYRK 160
+ GS ++Y+ + Q + D VIT+Y + +YR+
Sbjct: 760 APGSLTPVLYYADTKGDLLAQLESGKVDVVITSYGTLVTEYRR 802
>sp|Q9NRZ9|HELLS_HUMAN Lymphoid-specific helicase OS=Homo sapiens GN=HELLS PE=1 SV=1
Length = 838
Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 122/462 (26%), Positives = 195/462 (42%), Gaps = 75/462 (16%)
Query: 236 KSPLHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRF 295
++ L W+ +I+DE H IK+ + + + + K L+GTPLQN + EL+SL+ F
Sbjct: 340 RNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNF 399
Query: 296 LQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRA 355
L + D S E W++ + + +T + R
Sbjct: 400 LLPDVFD------------DLKSFES------------WFD--ITSLSETAEDIIAKERE 433
Query: 356 MILLK--HKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQF 413
+L H++L +LRR K A L +PP+ RE Y L S+ Q F
Sbjct: 434 QNVLHMLHQILTPFLLRRLKSDVA--LEVPPK-----------REVVVYAPL-SKKQEIF 479
Query: 414 NTYVQAGTVMNNYA----HIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVC 469
T + T+ N + +L R + YSK E E +Q
Sbjct: 480 YTAIVNRTIANMFGSSEKETIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEV 539
Query: 470 GLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKT 529
+ VV + L + + KC C+ P +++ +
Sbjct: 540 D-----RERAVVEVNIPVESEVNLKLQNIMMLLRKC--CNHPYLIEYPID---------- 582
Query: 530 TIKGFKSSSILNRIQLDE--FQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIN 587
+ ++DE +S K L + + +R K ++FSQ TS LD++
Sbjct: 583 --------PVTQEFKIDEELVTNSGKFLILDRMLPELKKR--GHKVLLFSQMTSMLDILM 632
Query: 588 YSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLM 647
H N +L GSMS R+ ++ F DP+ IFL+S +AGG+ +NLT A V +
Sbjct: 633 DYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIY 692
Query: 648 DPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILK 689
D WNP + QAQDR HRIGQ KP+ + R + NTI+++I++
Sbjct: 693 DSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVE 734
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 20/104 (19%)
Query: 33 YQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTG 92
YQ E + W E+ I GILADEMG+GKT+Q IA + + RG G
Sbjct: 226 YQVEGMEWLRMLWENGI-NGILADEMGLGKTVQCIATIALMIQ-RGVPGPF--------- 274
Query: 93 LLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRER 136
LV P++ + W++E RFT ++YHG+ ER
Sbjct: 275 -------LVCGPLSTLPNWMAEFKRFTP--DIPTMLYHGTQEER 309
>sp|O42861|FFT3_SCHPO ATP-dependent helicase fft3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=fft3 PE=1 SV=1
Length = 922
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 121/479 (25%), Positives = 206/479 (43%), Gaps = 82/479 (17%)
Query: 239 LHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQI 298
L + K+ + DE H++K+R S + ++++ + ++ L+GTPLQN + EL SL+ F I
Sbjct: 507 LRNQKFNVCVYDEGHYLKNRASERYRHLMSIPADFRVLLTGTPLQNNLKELISLLAF--I 564
Query: 299 TPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRAMIL 358
P+ + D K LD P + + V+ RA ++
Sbjct: 565 LPHVF----DYGLKSLDVIFT-MKKSPESDFERALLSEQRVS-------------RAKMM 606
Query: 359 LKHKVLRSVILRRTKKGRAADLALP--PRIVSL-------RRDSLDIREADYYESLYSES 409
+ VLR KK + D ALP RI+ RR D SL E+
Sbjct: 607 MAPFVLRR------KKSQVLD-ALPKKTRIIEFCEFSEEERRRYDDFASKQSVNSLLDEN 659
Query: 410 QAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLV-VYSKTASLRGETEADAEHVQQV 468
+ N A F +L +LR+ DHP L ++ K LR +A
Sbjct: 660 VMKTNLDTNANLAKKKSTAGF-VLVQLRKLADHPMLFRIHYKDDILRQMAKA-------- 710
Query: 469 CGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSK 528
+ ++P + + S + C C P
Sbjct: 711 ------IMNEPQYKKANELYIFEDMQYMSDIELHNLC--CKFP----------------- 745
Query: 529 TTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINY 588
+I F+ ++ + + +TK+ L++ + VE + ++FSQFT LD++
Sbjct: 746 -SINSFQ-------LKDEPWMDATKVRKLKKLLTNAVE--NGDRVVLFSQFTQVLDILQL 795
Query: 589 SLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMD 648
+ + ++ GS + R I++F D +FL+S KAGG +NL A+ V L D
Sbjct: 796 VMKSLNLKFLRFDGSTQVDFRQDLIDQFYADESINVFLLSTKAGGFGINLACANMVILYD 855
Query: 649 PWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSAD 707
+NP + QA+DR HR+GQ K + + +F++++TIEE I +L K+ + T+ G+A+
Sbjct: 856 VSFNPFDDLQAEDRAHRVGQKKEVTVYKFVVKDTIEEHIQRLA-NAKIALDATLSGNAE 913
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 71/181 (39%), Gaps = 37/181 (20%)
Query: 7 VDLDQQNAFMTETAED----PPDLITP---LLRYQKEWLAWALKQEESAIRGGILADEMG 59
V+ DQ +F T PP +P L YQ + W E + GILADEMG
Sbjct: 357 VNFDQMKSFGTPANSSFITTPPASFSPDIKLQDYQIIGINWLYLLYELKL-AGILADEMG 415
Query: 60 MGKTIQAIAL--VLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINR 117
+GKT Q IA +L + I G LVI P + + W+ E +
Sbjct: 416 LGKTCQTIAFFSLLMDKNING-------------------PHLVIAPASTMENWLREFAK 456
Query: 118 FTSVGSTKVLIYHGSN------RERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQY 171
F K+ +Y+GS RER ++ ++TTY + + QK
Sbjct: 457 FCP--KLKIELYYGSQVEREEIRERINSNKDSYNVMLTTYRLAATSKADRLFLRNQKFNV 514
Query: 172 C 172
C
Sbjct: 515 C 515
>sp|P32657|CHD1_YEAST Chromo domain-containing protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CHD1 PE=1 SV=1
Length = 1468
Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 105/466 (22%), Positives = 198/466 (42%), Gaps = 126/466 (27%)
Query: 236 KSPLHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRF 295
++ L S+KW+ + +DEAH +K+ S+ +++ + + + + ++GTPLQN + EL +LV F
Sbjct: 499 RAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNF 558
Query: 296 LQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRA 355
L P + ++ D + D E + H ++ F
Sbjct: 559 L--MPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPF----------------------- 593
Query: 356 MILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNT 415
ILRR KK + +LP + + R L + +YY+++ +++ +
Sbjct: 594 ------------ILRRLKKD--VEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTA 639
Query: 416 YVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDL 475
+ G + + +++ L++A +HPY
Sbjct: 640 GAKGG-----HFSLLNIMNELKKASNHPY------------------------------- 663
Query: 476 ADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFK 535
LFD++ + + K G G T + ++G
Sbjct: 664 -----------------LFDNAEERVLQKF---------------GDGKMTRENVLRGL- 690
Query: 536 SSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGV 595
SS K+ L +++ +++DG + ++FSQ LD++ L G+
Sbjct: 691 ------------IMSSGKM-VLLDQLLTRLKKDGH-RVLIFSQMVRMLDILGDYLSIKGI 736
Query: 596 NCVQLVGSMSIPARDAAINRFTEDPDCK--IFLMSLKAGGVALNLTVASHVFLMDPWWNP 653
N +L G++ R +I+ F PD +FL+S +AGG+ +NL A V + D WNP
Sbjct: 737 NFQRLDGTVPSAQRRISIDHFNS-PDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNP 795
Query: 654 AVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFE 699
+ QA R HRIGQ + + R + ++T+EE +L+ + +KK++ E
Sbjct: 796 QADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLE-RARKKMILE 840
Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 58/139 (41%), Gaps = 44/139 (31%)
Query: 37 WLAWALKQEESAIRGGILADEMGMGKTIQAIA----LVLAKREIRGTIGELDASSSSSTG 92
W+A+ + ++ GILADEMG+GKT+Q +A L+ A+R+ I
Sbjct: 386 WMAFLWSKGDN----GILADEMGLGKTVQTVAFISWLIFARRQNGPHI------------ 429
Query: 93 LLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERS--------------A 138
++ P++ + W+ ++ + Y G+ + R
Sbjct: 430 --------IVVPLSTMPAWLDTFEKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKG 479
Query: 139 KQFSEFDFVITTYSIIEAD 157
K+ +F+ ++TTY I D
Sbjct: 480 KKTMKFNVLLTTYEYILKD 498
>sp|G5EDG2|SMRCD_CAEEL SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1 homolog
OS=Caenorhabditis elegans GN=M03C11.8 PE=3 SV=1
Length = 989
Score = 119 bits (298), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 126/486 (25%), Positives = 202/486 (41%), Gaps = 103/486 (21%)
Query: 247 IILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFC 306
+I DE H +K+ S + ++ ++ K L+GTPLQN + EL SL+ F+ ++ Y
Sbjct: 522 VIYDEGHMLKNCDSERYRGLMKVKGKKKILLTGTPLQNNLIELISLMYFVLSKVFNKY-- 579
Query: 307 KDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRAMILLKHKVLRS 366
C + H ++HF P N ++ I +L+
Sbjct: 580 --------------CEDITH-LLQHFKQLG-----PALDTKNKALYQQDRIEEAKAILQP 619
Query: 367 VILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTVMNNY 426
ILRR K +LP + + + + Y+++ Q + G++M
Sbjct: 620 YILRRLKNQVLG--SLPSKSEQIIEVEMKKPQKQLYDNIVEALQQSEESGDSYGSLM--- 674
Query: 427 AHIFDLLTRLRQAVDHPY----------LVVYSKTASLRGETEADA--EHVQQVCGLCND 474
RLRQA +HP L +K LR + AD +HV + +D
Sbjct: 675 --------RLRQAANHPLLRRSEYTDQKLDKIAKMLCLREKAYADKKWQHVSEDLAWLSD 726
Query: 475 LADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGF 534
+ H C+ +F +C T F NE ++ K
Sbjct: 727 IK--------IHQLCE---------RF--RC-------TSKFLLNEQLALKSGKCE---- 756
Query: 535 KSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSG 594
QLD +++ G K ++FSQFTS LD++ L+ G
Sbjct: 757 ---------QLDVMLPE-------------IQKKGD-KVLIFSQFTSMLDILEVYLNIRG 793
Query: 595 VNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPA 654
+ +L G + R IN F D +FL+S +AGG+ +NLT A+H+ + D +NP
Sbjct: 794 YSYKRLDGQTPVLDRQEMINEFNLSKDLFVFLLSTRAGGLGINLTSANHIIIHDIDFNPY 853
Query: 655 VEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTE 714
++QA+DR HR+GQ KP+ + R + + T+E +L L KKKL E V G+L E
Sbjct: 854 NDKQAEDRCHRMGQEKPVHVTRLVSKGTVEVGMLALA-KKKLQLEKQVTDGVK--GQLDE 910
Query: 715 ADMRFL 720
+R L
Sbjct: 911 DALREL 916
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 29/125 (23%)
Query: 36 EWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLG 95
+WL ++ +AI L DEMG+GKTIQ +A + ++I G G
Sbjct: 403 KWLIMMYNKDLNAI----LGDEMGLGKTIQIVAFLSYLKQI-GKTG-------------- 443
Query: 96 IKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSN------RERSAKQFSEFDFVIT 149
L++ P + + W+ E +++ S ++L Y+GS R R KQ D ++T
Sbjct: 444 --PHLIVVPSSTIENWIGEFHKWCP--SIQLLTYYGSQDERKHLRHRVKKQKDHIDVILT 499
Query: 150 TYSII 154
TY+++
Sbjct: 500 TYNMV 504
>sp|O14981|BTAF1_HUMAN TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1
PE=1 SV=2
Length = 1849
Score = 116 bits (291), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 131/473 (27%), Positives = 201/473 (42%), Gaps = 115/473 (24%)
Query: 241 SLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITP 300
++K+ ILDE H IK+ ++ +KAV L ++Y+ LSGTP+QN V EL+SL F + P
Sbjct: 1395 NIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDF--LMP 1452
Query: 301 YSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRR------ 354
+ E R F RY PI ++ R
Sbjct: 1453 --------------GFLGTE---------RQFA--ARY-GKPILASRDARSSSREQEAGV 1486
Query: 355 -AMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQF 413
AM L +VL +LRR K+ DL PP+I+ DYY +L S Q
Sbjct: 1487 LAMDALHRQVL-PFLLRRMKEDVLQDL--PPKIIQ-----------DYYCTL---SPLQV 1529
Query: 414 NTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCN 473
Y ++A +R + VD +A+L ETE
Sbjct: 1530 QLY-------EDFAK-----SRAKCDVDETV-----SSATLSEETEK------------- 1559
Query: 474 DLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV------DF--TANEGAGNR 525
P + GH F A +++ K C+ P V +F TA + A
Sbjct: 1560 -----PKLKATGHVF--------QALQYLRKL--CNHPALVLTPQHPEFKTTAEKLAVQN 1604
Query: 526 TSKTTIKGFKSSSILNRIQLD-EFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLD 584
+S I+ S L ++ LD + + E+ E + + ++F Q S LD
Sbjct: 1605 SSLHDIQHAPKLSALKQLLLDCGLGNGSTSESGTESVV------AQHRILIFCQLKSMLD 1658
Query: 585 LINYSL---HKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVA 641
++ + L H V ++L GS+ R + ++RF DP + L++ GG+ LNLT A
Sbjct: 1659 IVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGA 1718
Query: 642 SHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKK 694
V ++ WNP + QA DR HRIGQ + + + R + T+EE+I+ LQ+ K
Sbjct: 1719 DTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFK 1771
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 26/139 (18%)
Query: 30 LLRYQKE---WLAWALKQEESAIRGGILADEMGMGKTIQAIALVL------AKREIRGTI 80
L +YQ++ WLA+ K + GIL D+MG+GKT+Q+I ++ A+ R +
Sbjct: 1266 LRKYQQDGVNWLAFLNKYK----LHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKL 1321
Query: 81 GELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHG--SNRERSA 138
E S LV+CP WV E+ +F S L Y G + R R
Sbjct: 1322 AECMPLPS-----------LVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQ 1370
Query: 139 KQFSEFDFVITTYSIIEAD 157
Q + ++ +Y ++ D
Sbjct: 1371 HQVKRHNLIVASYDVVRND 1389
>sp|P32333|MOT1_YEAST TATA-binding protein-associated factor MOT1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MOT1 PE=1 SV=1
Length = 1867
Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 121/490 (24%), Positives = 197/490 (40%), Gaps = 93/490 (18%)
Query: 239 LHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQI 298
L+ ++ +LDE H IK+ +S AKAV + ++++ L+GTP+QN V EL+SL FL
Sbjct: 1397 LNKTEYNYCVLDEGHIIKNSQSKLAKAVKEITANHRLILTGTPIQNNVLELWSLFDFL-- 1454
Query: 299 TPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNS-------YG 351
P + R+ A PI NS
Sbjct: 1455 -------------------------MPGFLGTEKMFQERF-AKPIAASRNSKTSSKEQEA 1488
Query: 352 GRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQA 411
G A+ L HK + +LRR K+ +D LPP+I+ L + Y + +
Sbjct: 1489 GVLALEAL-HKQVLPFMLRRLKEDVLSD--LPPKIIQDYYCELGDLQKQLYMDFTKKQKN 1545
Query: 412 QFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGL 471
++ + + HIF L +R+ +HP LV+ L A + + GL
Sbjct: 1546 VVEKDIENSEIADGKQHIFQALQYMRKLCNHPALVLSPNHPQL-----AQVQDYLKQTGL 1600
Query: 472 CNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTI 531
DL D ++ + + LF+ C I E + S+
Sbjct: 1601 --DLHD--IINAPKLSALRTLLFE------------CGI-------GEEDIDKKASQD-- 1635
Query: 532 KGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLH 591
+ F ++++ Q I +++ MVE D F ++ + Y
Sbjct: 1636 QNFPIQNVIS-------QHRALIFCQLKDMLDMVEND---------LFKKYMPSVTY--- 1676
Query: 592 KSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWW 651
++L GS+ R + +F EDP L++ K GG+ LNLT A V ++ W
Sbjct: 1677 ------MRLDGSIDPRDRQKVVRKFNEDPSIDCLLLTTKVGGLGLNLTGADTVIFVEHDW 1730
Query: 652 NPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGK 711
NP + QA DR HRIGQ K + + R + + T+EE+I+ LQ+ K + V
Sbjct: 1731 NPMNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTVVNQQNSGLAS 1790
Query: 712 LTEADMRFLF 721
+ + LF
Sbjct: 1791 MDTHQLLDLF 1800
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 19/148 (12%)
Query: 30 LLRYQKE---WLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDAS 86
L +YQ++ WLA+ K GIL D+MG+GKT+Q I ++ + + +R E
Sbjct: 1272 LRKYQQDGVNWLAFLNKYH----LHGILCDDMGLGKTLQTICIIASDQYLRKEDYE-KTR 1326
Query: 87 SSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSA--KQFSEF 144
S S L +L+ICP + W +E +++ KV++Y G R Q S+
Sbjct: 1327 SVESRAL----PSLIICPPSLTGHWENEFDQYAPF--LKVVVYAGGPTVRLTLRPQLSDA 1380
Query: 145 DFVITTYSIIEADYRKHVMPPKQKCQYC 172
D ++T+Y + D + K + YC
Sbjct: 1381 DIIVTSYDVARNDL---AVLNKTEYNYC 1405
>sp|Q6FK48|SWR1_CANGA Helicase SWR1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=SWR1 PE=3 SV=1
Length = 1450
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 89/154 (57%), Gaps = 3/154 (1%)
Query: 567 RDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFL 626
+DG + ++F+Q T LD++ L+ G ++L G+ I R RF DP +F+
Sbjct: 1191 KDGGHRALIFTQMTKVLDILEQFLNYHGYLYMRLDGATKIEDRQILTERFNSDPKITVFI 1250
Query: 627 MSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEER 686
+S ++GG+ +NLT A V D WNPA+++Q QDR HRIGQ + + I RF+ E+TIE
Sbjct: 1251 LSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESN 1310
Query: 687 ILKLQEKKKLVFEGTVGG---SADAFGKLTEADM 717
ILK +K+ + + + + D F KL+ D+
Sbjct: 1311 ILKKANQKRQLDDVIIQKGEFTTDYFSKLSVKDL 1344
Score = 69.7 bits (169), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 104/221 (47%), Gaps = 29/221 (13%)
Query: 243 KWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYS 302
KW+ ++LDEAH IK+ RS +A+L + + L+GTPLQN + EL+SL+ FL P +
Sbjct: 749 KWQYMVLDEAHNIKNFRSTRWQALLNFNTQRRILLTGTPLQNNIAELWSLLYFL--MPQT 806
Query: 303 YYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHG---NSYGGRRAMILL 359
+ KV ++ + W+ R V I+T G +R + L
Sbjct: 807 VIDGQ----KVSGFADLDAFQ---------QWFGRPVDKLIETGGTYEQDNETKRTVEKL 853
Query: 360 KHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQA 419
H+VLR +LRR K + +P + + L R+ Y+ S +Q +A
Sbjct: 854 -HQVLRPYLLRRLKAD--VEKQIPGKYEHIVYCKLSKRQRFLYDDFMSRAQT------KA 904
Query: 420 GTVMNNYAHIFDLLTRLRQAVDHPYL--VVYSKTASLRGET 458
N+ I + L +LR+ +HP L V KT+ L GE+
Sbjct: 905 TLASGNFMSIVNCLMQLRKVCNHPDLFEVRPIKTSFLFGES 945
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 74/164 (45%), Gaps = 33/164 (20%)
Query: 8 DLDQQNAFMTETAEDP---PDLITP-LLR-----YQKEWLAWALKQEESAIRGGILADEM 58
D ++ + F +T DP D+ TP LLR YQK+ L W L + GILADEM
Sbjct: 597 DNEKSDLFPADTTNDPLAVQDVPTPSLLRGTLRTYQKQGLNW-LASLYNNNTNGILADEM 655
Query: 59 GMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRF 118
G+GKTIQ I+L+ A + G L++ P + + W E RF
Sbjct: 656 GLGKTIQTISLL-----------SYLACEKHNWG-----PHLIVVPTSVLLNWEMEFKRF 699
Query: 119 TSVGSTKVLIYHGSNRERSAKQF-----SEFDFVITTYSIIEAD 157
KVL Y+G+ ++R K+ F I +Y +I D
Sbjct: 700 AP--GFKVLTYYGNPQQRKEKRKGWNKPDAFHVCIVSYQLIVQD 741
>sp|Q7TPQ3|SHPRH_MOUSE E3 ubiquitin-protein ligase SHPRH OS=Mus musculus GN=Shprh PE=1 SV=1
Length = 1674
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 115/267 (43%), Gaps = 39/267 (14%)
Query: 469 CGLC-NDLADDPVVTNCGHAFCKACL------FDSSASKFVAKCPTCSIPLT---VDFTA 518
C +C L V CGH FC C + + + KC C + V +
Sbjct: 1423 CPICARQLGKQWAVLTCGHCFCNECTSIIIEQYSVGSHRSSIKCAICRQTTSHKEVSYVF 1482
Query: 519 NEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQ 578
N+ +KG STK+EA+ + + RD AK +VFS
Sbjct: 1483 TSEKANQEDDIPVKG---------------SHSTKVEAVVRTLMKIQLRDPGAKALVFST 1527
Query: 579 FTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNL 638
+ LD+I+ +L + + Q+ I ++ F DP I L+ L G L +
Sbjct: 1528 WQDVLDIISKALTDNNMEFTQI---SRIKTFQENLSAFKYDPHINILLLPLHTGSNGLTI 1584
Query: 639 TVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEER---ILKLQEKKK 695
A+HV L++P NPA E QA R+HRIGQ KP + RFLI+ TIEER +LK E+
Sbjct: 1585 IEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAERSH 1644
Query: 696 LVFEG--------TVGGSADAFGKLTE 714
G TV G AD F K E
Sbjct: 1645 TSSSGKHSEASVLTVAGLADLFTKENE 1671
Score = 73.2 bits (178), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 95/416 (22%), Positives = 148/416 (35%), Gaps = 130/416 (31%)
Query: 94 LGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQ--FSEFDFVITTY 151
+ +ATL+I P + QWV EINR S +VL+Y G + + +E D VI TY
Sbjct: 704 VSTRATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKHGFLQPHFLAEQDIVIITY 763
Query: 152 SIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSV 211
++ ++ L Y P + + + + +K+
Sbjct: 764 DVLRSE---------------------------LNYVNIPHSNSEDGRRLRNQKR----- 791
Query: 212 YEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTAKAVLALES 271
Y P SPL +++W RI LDEA ++ A+ L
Sbjct: 792 YMAIP--------------------SPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSG 831
Query: 272 SYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRH 331
+W +SGTP+Q + +L+ LV FL I PY V+H
Sbjct: 832 INRWCISGTPVQRGLEDLFGLVVFLGIEPY--------------------------CVKH 865
Query: 332 FCWWNRYVATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRR 391
WW R + P Y + L + + ++ R KK + +PP+ +
Sbjct: 866 --WWIRLLYHP-------YCKKNPQHL--YSFIAKIMWRSAKKDVIDQIQIPPQTEEMHW 914
Query: 392 DSLDIREADYYESLYSESQAQFNTYVQAGTV----MNNYA------------HIFDLLTR 435
E +Y Q Q V ++++A I L R
Sbjct: 915 LHFSPVERHFY-------HRQHEVCCQDAIVKLRKISDWALKLSSLDRRTVSSILYPLLR 967
Query: 436 LRQAVDHP------YLVVYSKTASL---------RGETEADAEHVQQVCGLCNDLA 476
LRQA HP +L + T ++ + TE + H Q VC L N LA
Sbjct: 968 LRQACCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCAL-NGLA 1022
Score = 39.7 bits (91), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 20/22 (90%)
Query: 51 GGILADEMGMGKTIQAIALVLA 72
GGILADEMG+GKT++ +AL+L
Sbjct: 363 GGILADEMGLGKTVEVLALILT 384
>sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC144.05 PE=3 SV=1
Length = 1375
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 466 QQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD---------- 515
Q+C +C D+ +T CGH +C CL + K + CP C L +
Sbjct: 1089 HQICIICRDIIKQGFITTCGHLYCSFCL--EAWLKHSSSCPMCKTKLNKNNAYYIGESRD 1146
Query: 516 -FTANE---GAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSA 571
++ E G R + I ++ ++ ++L E +KI+ + + + ++ +
Sbjct: 1147 IYSRQEFVTGFNKRDERLEILDDEAYRQISNMELKE-SFGSKIDTISKHLLYLKHNELYP 1205
Query: 572 KGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 631
K +VFSQ+ LD+++ S +G+ ++ G +++ + RF E+ ++ + ++
Sbjct: 1206 KVVVFSQWLDVLDVLHKSFEANGIVFIRFDGK----SKNTCLKRFKEERSLQVLTLHARS 1261
Query: 632 GGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKL 690
L LT A+HVF+ +P N +E QA R+HRIGQ +P + +++E+T+E IL L
Sbjct: 1262 QSSGLTLTNATHVFMCEPLLNSGIEMQAISRVHRIGQTRPTFVYYYIVEDTVEGHILNL 1320
Score = 73.2 bits (178), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Query: 49 IRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAV 108
IRGGILADEMGMGKT++ + LVL + + KATL+I P +
Sbjct: 283 IRGGILADEMGMGKTLEVLGLVLHHQLPISLTDTCTFDQVVGKNVKYSKATLIITPSTIL 342
Query: 109 TQWVSEINRFTSVGSTKVLIYHG---SNRERSAKQFSEFDFVITTYS 152
QW+SEI+ V S KV Y G SN +SAK F + D V+T+YS
Sbjct: 343 DQWLSEID--LHVPSLKVFHYQGIRKSNGLKSAKIFLDCDIVVTSYS 387
Score = 52.8 bits (125), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 94/217 (43%), Gaps = 39/217 (17%)
Query: 236 KSPLHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRF 295
KSPL + W RI +DEA ++ +SN A+ + + W +SGTP+++ V +L+ L+
Sbjct: 413 KSPLIDVCWWRICVDEAQMVETSQSNVAQMIYRIPRVNCWTVSGTPVRSEVDDLFGLLFL 472
Query: 296 LQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRA 355
L+ +P Y + K ++++ VR FC + +G
Sbjct: 473 LRYSPM-YLYKKQAWMQIIE----------KKRVREFC--------------DLFG---- 503
Query: 356 MILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNT 415
S++ R +K+ +L LPP+ L + E Y+ L SE+ +
Sbjct: 504 ----------SLVCRHSKQDVEEELKLPPQHRICMTTRLSVVEETNYQDLLSEAAKSLHF 553
Query: 416 YVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTA 452
+ + + + L RLRQA HP + +K+A
Sbjct: 554 FKDRNLDLCDEESMRRWLVRLRQACCHPQVGFGNKSA 590
>sp|Q6CA87|SWR1_YARLI Helicase SWR1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=SWR1 PE=3 SV=1
Length = 1772
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 88/152 (57%), Gaps = 3/152 (1%)
Query: 569 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMS 628
G + ++F+Q T LD++ L+ G+ ++L G+ I R RF DP +F++S
Sbjct: 1484 GGHRALIFTQMTKVLDVLEQFLNIHGLRYMRLDGATKIEQRQLLTERFNTDPKIPVFILS 1543
Query: 629 LKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERIL 688
++GG+ +NLT A V D WNP++++Q QDR HRIGQ + + I RF+ E+TIE IL
Sbjct: 1544 TRSGGLGINLTGADTVIFYDSDWNPSMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNIL 1603
Query: 689 KLQEKKKLVFEGTVGG---SADAFGKLTEADM 717
K +K+++ + + D F K++ DM
Sbjct: 1604 KKANQKQILDNVVIQDGEFTTDYFNKMSVHDM 1635
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 97/204 (47%), Gaps = 28/204 (13%)
Query: 243 KWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYS 302
+W +ILDEAH IK+ RS +++L + + L+GTPLQN + EL+SL+ FL P S
Sbjct: 1030 RWHYMILDEAHNIKNFRSQRWQSLLHFNTVRRLLLTGTPLQNNLMELWSLLYFL--MPSS 1087
Query: 303 YYFCKDCDCKVLDYSSAECPNCPHNSVRHFC-WWNRYVATPIQTHGNSYGGRRAMILLKH 361
+ + P +++ F W++R + ++ G + + H
Sbjct: 1088 -------------RNQMDMPGFA--NLKDFQEWFSRPIDKMVE--GGVDEEAKTTVSKLH 1130
Query: 362 KVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGT 421
++LR +LRR KK + +P + + L R+ Y+ S+AQ ++ G
Sbjct: 1131 QILRPYLLRRLKKD--VEKQMPAKYEHVVYCRLSKRQRYLYDDFM--SRAQTRETLKTG- 1185
Query: 422 VMNNYAHIFDLLTRLRQAVDHPYL 445
N+ I + L +LR+ +HP L
Sbjct: 1186 ---NFLSIINCLMQLRKVCNHPDL 1206
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 69/150 (46%), Gaps = 37/150 (24%)
Query: 20 AEDPPDLITPLLR-YQK---EWLAWALKQEESAIRGGILADEMGMGKTIQAIALV--LA- 72
A +PP L+ LR YQ+ EWLA + + GILADEMG+GKTIQ I+L+ LA
Sbjct: 898 AVEPPFLLRGTLRAYQQLGLEWLAGLYNNDTN----GILADEMGLGKTIQTISLLSYLAC 953
Query: 73 KREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGS 132
+ I G L+I P + + W E RF KV+ Y+G+
Sbjct: 954 EHHIWG-------------------PHLIIVPTSVMLNWEMEFKRFAP--GFKVMTYYGN 992
Query: 133 NRERSAKQF-----SEFDFVITTYSIIEAD 157
+R K+ + IT+Y ++ D
Sbjct: 993 PVQRREKRRGWNKEDTWHVCITSYQLVLQD 1022
>sp|P75093|Y020_MYCPN Uncharacterized ATP-dependent helicase MPN_020 OS=Mycoplasma
pneumoniae (strain ATCC 29342 / M129) GN=MPN_020 PE=3
SV=1
Length = 1030
Score = 110 bits (275), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 94/173 (54%), Gaps = 2/173 (1%)
Query: 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPA 608
++S K EA E I +E K I+F+QF +D + + G+ G S +
Sbjct: 859 ENSAKKEAALEIIHEAIE--NQRKIILFTQFIDVIDHFKDTFKEQGIEYFIFDGRKSPKS 916
Query: 609 RDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQ 668
R + I +F + + L SLKAGGV +NLT A V D WWN AVE QA DR HRIGQ
Sbjct: 917 RHSIIEKFNNAKNPCVLLASLKAGGVGINLTAAEVVIHFDVWWNTAVENQATDRAHRIGQ 976
Query: 669 YKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLF 721
K +++ R + +NTIEER+ ++Q +K+ + T+ + F LT ++ LF
Sbjct: 977 KKTVQVYRIIAKNTIEERVCQVQAEKQELVSKTLVEDVNFFESLTNEELLRLF 1029
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 23/163 (14%)
Query: 10 DQQNAFMTETAEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIAL 69
DQ N + E IT L YQ+E + W EE+ GGILADEMG+GKT+Q I
Sbjct: 560 DQNNNVFDLSLEHKK--ITSLRNYQQEGVKWIRGLEENKF-GGILADEMGLGKTVQVI-- 614
Query: 70 VLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIY 129
LD+ + L +L+I P + + W SE +F KV
Sbjct: 615 ----------FALLDSYLKNHVNL----PSLIIVPASLLLNWKSEFEKFAPQIKVKVANI 660
Query: 130 HGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYC 172
R ++ + + +I +++++ +D + + KQ+ Y
Sbjct: 661 PSKERGELYEKLTN-EILIVSFNVLRSDVK---LITKQRFHYV 699
Score = 40.8 bits (94), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 36/54 (66%)
Query: 243 KWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFL 296
++ +++DEA IK+ S+ KA ++ ++ AL+GTP++NR+ +L+S F+
Sbjct: 695 RFHYVVIDEAQGIKNDSSSITKAAKKVKGNFCLALTGTPIENRLLDLWSCFDFV 748
>sp|Q29KH2|RAD54_DROPS DNA repair and recombination protein RAD54-like OS=Drosophila
pseudoobscura pseudoobscura GN=okr PE=3 SV=2
Length = 782
Score = 110 bits (274), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 87/154 (56%), Gaps = 1/154 (0%)
Query: 569 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE-DPDCKIFLM 627
G+ K ++ S +T LDL K V+L G+MSI R ++RF + + DC +F++
Sbjct: 513 GNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDCFLFML 572
Query: 628 SLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERI 687
S KAGG LNL A+ +F+ DP WNPA ++QA R+ R GQ KP I R + +IEE+I
Sbjct: 573 SSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKI 632
Query: 688 LKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLF 721
L+ Q KK + + + A T D++ LF
Sbjct: 633 LQRQTHKKSLSSTIIDNNESAEKHFTRDDLKDLF 666
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 34/51 (66%)
Query: 247 IILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQ 297
+I DE H +K+ + T +A++ L++ + LSGTP+QN + E +SLV F+
Sbjct: 291 VICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVN 341
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 67/144 (46%), Gaps = 19/144 (13%)
Query: 11 QQNAFMTETAEDPPDLITPLLR-YQKE---WLAWALKQEESAIRGGILADEMGMGKTIQA 66
+ ++ + DP L++ +LR +Q+E ++ ++ + G I+ADEMG+GKT+Q
Sbjct: 134 EPSSVLVHVVVDP--LLSNILRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQC 191
Query: 67 IALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKV 126
+ALV T+ + A + I +++ P + V W E ++ G
Sbjct: 192 VALVW-------TLLKQSAECKPT-----INKCIIVSPSSLVKNWEKEFTKWLH-GRMHC 238
Query: 127 LIYHGSNRERSAKQFSEFDFVITT 150
L G ++E + + +F +T
Sbjct: 239 LAMEGGSKENTVRALEQFSMNAST 262
>sp|B4GS98|RAD54_DROPE DNA repair and recombination protein RAD54-like OS=Drosophila
persimilis GN=okr PE=3 SV=1
Length = 782
Score = 110 bits (274), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 87/154 (56%), Gaps = 1/154 (0%)
Query: 569 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE-DPDCKIFLM 627
G+ K ++ S +T LDL K V+L G+MSI R ++RF + + DC +F++
Sbjct: 513 GNDKVVLISNYTQTLDLFELLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDCFLFML 572
Query: 628 SLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERI 687
S KAGG LNL A+ +F+ DP WNPA ++QA R+ R GQ KP I R + +IEE+I
Sbjct: 573 SSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKI 632
Query: 688 LKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLF 721
L+ Q KK + + + A T D++ LF
Sbjct: 633 LQRQTHKKSLSSTIIDNNESAEKHFTRDDLKDLF 666
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 34/51 (66%)
Query: 247 IILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQ 297
+I DE H +K+ + T +A++ L++ + LSGTP+QN + E +SLV F+
Sbjct: 291 VICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVN 341
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 67/144 (46%), Gaps = 19/144 (13%)
Query: 11 QQNAFMTETAEDPPDLITPLLR-YQKE---WLAWALKQEESAIRGGILADEMGMGKTIQA 66
+ ++ + DP L++ +LR +Q+E ++ ++ + G I+ADEMG+GKT+Q
Sbjct: 134 EPSSVLVHVVVDP--LLSNILRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQC 191
Query: 67 IALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKV 126
+ALV T+ + A + I +++ P + V W E ++ G
Sbjct: 192 VALVW-------TLLKQSAECKPT-----INKCIIVSPSSLVKNWEKEFTKWLH-GRMHC 238
Query: 127 LIYHGSNRERSAKQFSEFDFVITT 150
L G ++E + + +F +T
Sbjct: 239 LAMEGGSKENTVRALEQFSMNAST 262
>sp|P47264|Y018_MYCGE Uncharacterized ATP-dependent helicase MG018 OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=MG018 PE=3
SV=3
Length = 1031
Score = 109 bits (273), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 98/177 (55%), Gaps = 2/177 (1%)
Query: 545 LDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSM 604
+++F+ ++K A I +E K I+F+QF +D +L ++ + G
Sbjct: 856 VNDFEDNSKANAALNIIYEALE--NKRKVILFTQFLDVIDCFKQTLKNQKIDHLVFDGRK 913
Query: 605 SIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIH 664
++ R+ I +F + + L SLKAGGV +NLT A V D WWN AVE QA DR H
Sbjct: 914 TVKNRNTIIQKFNSAKEPCVMLASLKAGGVGINLTAAEVVIHFDVWWNSAVENQATDRAH 973
Query: 665 RIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLF 721
RIGQ K +++ R + +NTIEER+ ++Q +K+ + + T+ + F L+ ++ LF
Sbjct: 974 RIGQSKTVQVYRIIAKNTIEERVCQVQNQKQELVKKTLVEDVNFFKSLSHEELLKLF 1030
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 19/111 (17%)
Query: 27 ITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDAS 86
I L +YQKE + W E++ GGILADEMG+GKT Q I LD+
Sbjct: 575 INNLRKYQKEGVKWIRALEDNQF-GGILADEMGLGKTAQVI------------FAMLDSY 621
Query: 87 SSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERS 137
S+ + L +L+I P + + W SE +F K++ +G+ +ERS
Sbjct: 622 QSTKSLL----PSLIIVPASLLLNWKSEFQKFAP--HVKIVTANGNFKERS 666
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 35/54 (64%)
Query: 243 KWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFL 296
K+ +++DEA IK+ S KA ++ ++ AL+GTP++NR+ +L+S F+
Sbjct: 695 KFHYVVIDEAQGIKNENSTVTKAAKKIKGNFCLALTGTPIENRLLDLWSCFDFV 748
>sp|Q149N8|SHPRH_HUMAN E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1 SV=2
Length = 1683
Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 117/263 (44%), Gaps = 29/263 (11%)
Query: 469 CGLC-NDLADDPVVTNCGHAFCKACL------FDSSASKFVAKCPTCSIPLT---VDFTA 518
C +C L V CGH FC C+ + + + KC C + + +
Sbjct: 1432 CPICARQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISYVF 1491
Query: 519 NEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQ 578
N+ +KG STK+EA+ + + RD AK +VFS
Sbjct: 1492 TSEKANQEEDIPVKG---------------SHSTKVEAVVRTLMKIQLRDPGAKALVFST 1536
Query: 579 FTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNL 638
+ LD+I+ +L + + Q+ + ++ F DP I L+ L G L +
Sbjct: 1537 WQDVLDIISKALTDNNMEFAQI---SRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTI 1593
Query: 639 TVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVF 698
A+HV L++P NPA E QA R+HRIGQ KP + RFLI+ TIEER+ + + +
Sbjct: 1594 IEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAERSH 1653
Query: 699 EGTVGGSADAFGKLTEADMRFLF 721
+ ++A LT AD+ LF
Sbjct: 1654 TNSSAKHSEA-SVLTVADLADLF 1675
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 93/412 (22%), Positives = 150/412 (36%), Gaps = 122/412 (29%)
Query: 94 LGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQ--FSEFDFVITTY 151
+ +ATL+I P + QWV EINR S +VL+Y G ++ + +E D VI TY
Sbjct: 713 VSTRATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVIITY 772
Query: 152 SIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSV 211
++ ++ L Y P + + + + +K+
Sbjct: 773 DVLRSE---------------------------LNYVDIPHSNSEDGRRLRNQKR----- 800
Query: 212 YEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTAKAVLALES 271
Y P SPL +++W RI LDEA ++ A+ L
Sbjct: 801 YMAIP--------------------SPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSG 840
Query: 272 SYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRH 331
+W +SGTP+Q + +L+ LV FL I PY V+H
Sbjct: 841 INRWCISGTPVQRGLEDLFGLVVFLGIEPY--------------------------CVKH 874
Query: 332 FCWWNRYVATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRR 391
WW R + P Y + L + + ++ R KK + +PP+ +
Sbjct: 875 --WWVRLLYRP-------YCKKNPQHL--YSFIAKILWRSAKKDVIDQIQIPPQTEEIHW 923
Query: 392 DSLDIREADYYESLYSESQAQFNTYVQAGTVMNNYA------------HIFDLLTRLRQA 439
E +Y + + + V ++++A I L RLRQA
Sbjct: 924 LHFSPVERHFY---HRQHEVCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQA 980
Query: 440 VDHP------YLVVYSKTASL---------RGETEADAEHVQQVCGLCNDLA 476
HP +L + T ++ + TE + H Q VC L N LA
Sbjct: 981 CCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCAL-NGLA 1031
Score = 40.8 bits (94), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 53/118 (44%)
Query: 8 DLDQQNAFMTETAEDP----------PDLITPLLRYQKEWLAWALKQE--------ESAI 49
D+D+ F+ +T + P LI L YQ+E + W L+QE ESA+
Sbjct: 272 DIDELYHFVKQTHQQETQSIQVDVQHPALIPVLRPYQREAVNWMLQQECFRSSPATESAL 331
Query: 50 R-----------------------------------GGILADEMGMGKTIQAIALVLA 72
GGILADEMG+GKT++ +AL+L
Sbjct: 332 HFLWREIVTSEGLKLYYNPYTGCIIREYPNSGPQLLGGILADEMGLGKTVEVLALILT 389
>sp|B3NAN8|RAD54_DROER DNA repair and recombination protein RAD54-like OS=Drosophila
erecta GN=okr PE=3 SV=1
Length = 784
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 88/159 (55%), Gaps = 1/159 (0%)
Query: 565 VERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE-DPDCK 623
+ DG+ K ++ S +T LDL K V+L G+MSI R ++RF + + D
Sbjct: 511 IRADGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSF 570
Query: 624 IFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTI 683
+F++S KAGG LNL A+ +F+ DP WNPA ++QA R+ R GQ KP I R + +I
Sbjct: 571 LFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSI 630
Query: 684 EERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLFV 722
EE+IL+ Q KK + + + A T D++ LF
Sbjct: 631 EEKILQRQTHKKSLSSTIIDNNESAEKHFTRDDLKDLFT 669
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 247 IILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFL 296
+I DE H +K+ + T +A++ L++ + LSGTP+QN + E YSLV F+
Sbjct: 294 VICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFV 343
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 30/151 (19%)
Query: 2 HEKDDVDLDQQNAFMTETAEDPPDLITPLLR-YQKE---WLAWALKQEESAIRGGILADE 57
HE+ +D + + DP L++ +LR +Q+E ++ ++ + G I+ADE
Sbjct: 132 HERMGMD---PSKVLVHVVVDP--LLSNILRPHQREGVRFMYECVEGKRGNFNGCIMADE 186
Query: 58 MGMGKTIQAIALV--LAKR--EIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVS 113
MG+GKT+Q + LV L ++ E + TI + +V+ P + V W
Sbjct: 187 MGLGKTLQCVTLVWTLLRQGPECKPTINK----------------AIVVSPSSLVKNWEK 230
Query: 114 EINRFTSVGSTKVLIYHGSNRERSAKQFSEF 144
E ++ G L G +E + + +F
Sbjct: 231 EFTKWLQ-GRLLCLPMEGGTKENTIRALEQF 260
>sp|B3MMA5|RAD54_DROAN DNA repair and recombination protein RAD54-like OS=Drosophila
ananassae GN=okr PE=3 SV=1
Length = 791
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 87/154 (56%), Gaps = 1/154 (0%)
Query: 569 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE-DPDCKIFLM 627
G+ K ++ S +T LDL K V+L G+MSI R +++F + D +C +F++
Sbjct: 518 GNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDKFNDPDSECFLFML 577
Query: 628 SLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERI 687
S KAGG LNL A+ +F+ DP WNPA ++QA R+ R GQ KP I R + TIEE+I
Sbjct: 578 SSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGTIEEKI 637
Query: 688 LKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLF 721
L+ Q KK + + + + T D++ LF
Sbjct: 638 LQRQTHKKSLSSTIIDNNESSEKHFTRDDLKDLF 671
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 247 IILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFL 296
+I DE H +K+ + T +A++ L++ + LSGTP+QN + E +SLV F+
Sbjct: 297 VICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFV 346
Score = 40.8 bits (94), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 22/147 (14%)
Query: 2 HEKDDVDLDQQNAFMTETAEDPPDLITPLLR-YQKE---WLAWALKQEESAIRGGILADE 57
HE+ +D + + DP L++ +LR +Q+E ++ ++ ++ G I+ADE
Sbjct: 135 HERMSMD---PSKVLVHVVVDP--LLSNILRPHQREGVRFMYECVEGKKGDFNGCIMADE 189
Query: 58 MGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINR 117
MG+GKT+Q + LV T+ S + I +V+ P + V W E +
Sbjct: 190 MGLGKTLQCVTLVW-------TLLRQGPESKPT-----INKAIVVSPSSLVKNWEKEFTK 237
Query: 118 FTSVGSTKVLIYHGSNRERSAKQFSEF 144
+ G L G +E + + +F
Sbjct: 238 WLQ-GRLLCLAMEGGTKENTIRVLEQF 263
>sp|B4NXB8|RAD54_DROYA DNA repair and recombination protein RAD54-like OS=Drosophila
yakuba GN=okr PE=3 SV=2
Length = 784
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 88/159 (55%), Gaps = 1/159 (0%)
Query: 565 VERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE-DPDCK 623
+ DG+ K ++ S +T LDL K V+L G+MSI R ++RF + + D
Sbjct: 511 IRADGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSF 570
Query: 624 IFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTI 683
+F++S KAGG LNL A+ +F+ DP WNPA ++QA R+ R GQ KP I R + +I
Sbjct: 571 LFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRMVASGSI 630
Query: 684 EERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLFV 722
EE+IL+ Q KK + + + A T D++ LF
Sbjct: 631 EEKILQRQTHKKSLSSTIIDNNESAEKHFTRDDLKDLFT 669
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 247 IILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFL 296
+I DE H +K+ + T +A++ L++ + LSGTP+QN + E YSLV F+
Sbjct: 294 VICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFV 343
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 27/131 (20%)
Query: 22 DPPDLITPLLR-YQKE---WLAWALKQEESAIRGGILADEMGMGKTIQAIALV--LAKR- 74
DP L++ +LR +Q+E ++ ++ + G I+ADEMG+GKT+Q + LV L ++
Sbjct: 149 DP--LLSNILRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQG 206
Query: 75 -EIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSN 133
E + TI + +V+ P + V W E ++ G L G
Sbjct: 207 PECKPTINK----------------AIVVSPSSLVKNWEKEFTKWLQ-GRLLCLPMEGGT 249
Query: 134 RERSAKQFSEF 144
+E + + +F
Sbjct: 250 KENTIRALEQF 260
>sp|B4M9A8|RAD54_DROVI DNA repair and recombination protein RAD54-like OS=Drosophila
virilis GN=okr PE=3 SV=1
Length = 786
Score = 107 bits (267), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 88/159 (55%), Gaps = 3/159 (1%)
Query: 565 VERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDP--DC 622
+ + K ++ S +T LDL K + V+L G+M+I R ++RF DP DC
Sbjct: 505 IRANSDDKVVLISNYTQTLDLFEQLARKRKYSYVRLDGTMTIKKRSKVVDRFN-DPATDC 563
Query: 623 KIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENT 682
+F++S KAGG LNL A+ +F+ DP WNPA ++QA R+ R GQ KP I R + +
Sbjct: 564 FLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGS 623
Query: 683 IEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLF 721
IEE+IL+ Q KK + + + A T D++ LF
Sbjct: 624 IEEKILQRQTHKKSLSSSIIDNNDSAEKHFTRDDLKDLF 662
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 247 IILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFL 296
+I DE H +K+ + T +A++ L++ + LSGTP+QN + E +SLV F+
Sbjct: 288 VICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFV 337
Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Query: 25 DLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELD 84
+++ P R ++ ++ + G I+ADEMG+GKT+Q + L T L
Sbjct: 147 NVLRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVTL---------TWTLLR 197
Query: 85 ASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEF 144
S I +V+ P + V W E ++ G L G ++E + + +F
Sbjct: 198 QSPDCKP---TISKAIVVSPSSLVKNWEKEFTKWLH-GRMHCLAMEGGSKEDTTRTLEQF 253
>sp|Q6CJ38|SWR1_KLULA Helicase SWR1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SWR1 PE=3
SV=1
Length = 1572
Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 87/154 (56%), Gaps = 3/154 (1%)
Query: 567 RDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFL 626
+D + ++F+Q T LD++ L+ G ++L G+ I R RF DP +F+
Sbjct: 1323 KDNGHRALIFTQMTKVLDILEQFLNFHGYLYMRLDGATKIEDRQILTERFNSDPRITVFI 1382
Query: 627 MSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEER 686
+S ++GG+ +NLT A V D WNPA+++Q QDR HRIGQ + + I RF+ ++TIE
Sbjct: 1383 LSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSDHTIESN 1442
Query: 687 ILKLQEKKKL---VFEGTVGGSADAFGKLTEADM 717
ILK +K+ V T + D F KL+ D+
Sbjct: 1443 ILKKANQKRHLDNVVIQTGDFTTDYFTKLSVKDL 1476
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 27/206 (13%)
Query: 243 KWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYS 302
KW+ +ILDEAH IK+ RS +A+L + + L+GTPLQN + EL+SL+ FL P +
Sbjct: 886 KWQYMILDEAHNIKNFRSTRWQALLNFNTERRLLLTGTPLQNNLAELWSLLYFL--MPQT 943
Query: 303 YYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGG---RRAMILL 359
+ KV ++ + W+ R V ++T G +Y + +
Sbjct: 944 AL----ENGKVSGFADLDA---------FQQWFGRPVDKIVET-GENYEQDEETKKTVSK 989
Query: 360 KHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQA 419
H+VLR +LRR K + +P + + L R+ Y+ S+AQ + +
Sbjct: 990 LHQVLRPYLLRRLKAD--VEKQMPGKYEHIIYCRLSKRQRFLYDDFM--SRAQTKETLAS 1045
Query: 420 GTVMNNYAHIFDLLTRLRQAVDHPYL 445
G N+ I + L +LR+ +HP L
Sbjct: 1046 G----NFMSIINCLMQLRKVCNHPDL 1067
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 79/176 (44%), Gaps = 44/176 (25%)
Query: 4 KDDVDLDQQNAFMTET-----AEDP--------PDLITPLLR-YQKEWLAWALKQEESAI 49
K D +L + A TE+ A DP P L+ LR YQK+ L W L +
Sbjct: 725 KSDNELKDEKAETTESVTSPAAADPLAVSDVPVPSLLRGTLRIYQKQGLNW-LASLYNNK 783
Query: 50 RGGILADEMGMGKTIQAIALV--LA-KREIRGTIGELDASSSSSTGLLGIKATLVICPVA 106
GILADEMG+GKTIQ I+L+ LA ++E G L++ P +
Sbjct: 784 TNGILADEMGLGKTIQTISLLAYLACEKENWG-------------------PHLIVVPTS 824
Query: 107 AVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQF-----SEFDFVITTYSIIEAD 157
+ W E RF KVL Y+GS ++R K+ F IT+Y ++ D
Sbjct: 825 VLLNWEMEFKRFAP--GFKVLTYYGSPQQRREKRKGWNKPDAFHVCITSYQLVVHD 878
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 257,149,765
Number of Sequences: 539616
Number of extensions: 10424333
Number of successful extensions: 33751
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 195
Number of HSP's that attempted gapping in prelim test: 31591
Number of HSP's gapped (non-prelim): 2016
length of query: 723
length of database: 191,569,459
effective HSP length: 125
effective length of query: 598
effective length of database: 124,117,459
effective search space: 74222240482
effective search space used: 74222240482
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)