Query 004925
Match_columns 723
No_of_seqs 148 out of 1796
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 15:09:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004925.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004925hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1002 Nucleotide excision re 100.0 1.3E-97 3E-102 744.0 41.2 624 7-723 162-791 (791)
2 KOG0387 Transcription-coupled 100.0 3.8E-76 8.2E-81 622.4 37.8 480 20-722 196-698 (923)
3 KOG0385 Chromatin remodeling c 100.0 2.5E-76 5.5E-81 620.2 35.4 458 22-705 159-623 (971)
4 PLN03142 Probable chromatin-re 100.0 1.3E-72 2.7E-77 644.4 42.8 473 21-721 161-640 (1033)
5 KOG4439 RNA polymerase II tran 100.0 6E-70 1.3E-74 566.8 35.7 540 20-722 316-900 (901)
6 KOG0392 SNF2 family DNA-depend 100.0 2E-69 4.3E-74 591.1 32.8 511 14-722 960-1495(1549)
7 KOG0389 SNF2 family DNA-depend 100.0 5.8E-70 1.3E-74 574.6 25.9 515 29-721 399-927 (941)
8 KOG0384 Chromodomain-helicase 100.0 2.3E-68 5E-73 586.0 31.0 471 28-721 369-856 (1373)
9 KOG0390 DNA repair protein, SN 100.0 3.8E-64 8.2E-69 548.0 39.9 497 23-722 232-748 (776)
10 KOG0391 SNF2 family DNA-depend 100.0 1.5E-64 3.3E-69 546.3 32.7 567 21-722 607-1428(1958)
11 KOG0388 SNF2 family DNA-depend 100.0 4.7E-64 1E-68 520.8 29.3 543 17-705 555-1178(1185)
12 KOG1015 Transcription regulato 100.0 9.6E-59 2.1E-63 493.6 32.6 589 9-721 648-1316(1567)
13 KOG0386 Chromatin remodeling c 100.0 1.7E-60 3.6E-65 514.5 18.7 467 19-703 383-860 (1157)
14 KOG1001 Helicase-like transcri 100.0 4.4E-56 9.5E-61 489.5 26.4 528 32-704 135-673 (674)
15 PRK04914 ATP-dependent helicas 100.0 9.8E-54 2.1E-58 488.2 32.0 471 23-720 146-644 (956)
16 KOG1000 Chromatin remodeling p 100.0 1.5E-52 3.3E-57 420.9 30.6 430 23-704 192-626 (689)
17 COG0553 HepA Superfamily II DN 100.0 1.7E-50 3.6E-55 484.5 38.1 501 24-722 333-864 (866)
18 KOG1016 Predicted DNA helicase 100.0 1.2E-48 2.6E-53 409.0 24.7 582 24-721 249-888 (1387)
19 TIGR00603 rad25 DNA repair hel 100.0 3E-39 6.5E-44 357.1 34.9 356 27-689 253-615 (732)
20 COG1111 MPH1 ERCC4-like helica 100.0 1.5E-37 3.3E-42 317.2 34.3 449 28-702 14-502 (542)
21 PF00176 SNF2_N: SNF2 family N 100.0 2.5E-38 5.5E-43 330.7 18.6 289 33-446 1-299 (299)
22 KOG0298 DEAD box-containing he 100.0 4.7E-38 1E-42 348.8 20.7 301 52-447 377-692 (1394)
23 PRK13766 Hef nuclease; Provisi 100.0 1.2E-34 2.6E-39 339.7 36.0 145 549-698 344-496 (773)
24 KOG0383 Predicted helicase [Ge 100.0 3.6E-34 7.8E-39 310.8 7.6 398 28-635 294-696 (696)
25 COG1061 SSL2 DNA or RNA helica 100.0 2.1E-30 4.6E-35 280.5 32.3 370 24-692 31-405 (442)
26 PHA02558 uvsW UvsW helicase; P 100.0 4.2E-30 9.1E-35 284.0 32.5 127 553-682 329-456 (501)
27 KOG0354 DEAD-box like helicase 100.0 7.8E-28 1.7E-32 260.9 35.7 147 549-703 392-550 (746)
28 KOG1123 RNA polymerase II tran 100.0 4.4E-27 9.6E-32 237.8 22.3 353 28-687 301-659 (776)
29 PRK11192 ATP-dependent RNA hel 99.9 1.6E-24 3.4E-29 237.6 30.6 116 553-674 232-347 (434)
30 PTZ00110 helicase; Provisional 99.9 1.5E-24 3.2E-29 241.6 30.2 125 552-682 361-485 (545)
31 PRK10590 ATP-dependent RNA hel 99.9 1.7E-24 3.7E-29 237.6 28.1 111 567-681 242-352 (456)
32 PRK11448 hsdR type I restricti 99.9 1.8E-24 3.8E-29 254.2 28.3 121 555-678 683-815 (1123)
33 PRK11776 ATP-dependent RNA hel 99.9 2.5E-24 5.4E-29 237.5 27.7 121 553-681 229-349 (460)
34 PLN00206 DEAD-box ATP-dependen 99.9 6.1E-24 1.3E-28 236.0 30.4 123 553-681 352-475 (518)
35 PRK04537 ATP-dependent RNA hel 99.9 3.8E-24 8.1E-29 239.1 28.6 120 553-680 244-363 (572)
36 TIGR00614 recQ_fam ATP-depende 99.9 2.6E-24 5.6E-29 236.9 27.0 106 568-675 224-329 (470)
37 PRK04837 ATP-dependent RNA hel 99.9 1.6E-24 3.5E-29 236.3 25.1 122 552-681 241-362 (423)
38 PRK01297 ATP-dependent RNA hel 99.9 9.7E-24 2.1E-28 233.3 30.0 121 553-681 322-442 (475)
39 PRK11634 ATP-dependent RNA hel 99.9 1E-22 2.2E-27 228.7 31.1 115 552-672 231-345 (629)
40 PRK11057 ATP-dependent DNA hel 99.9 4.1E-23 8.9E-28 233.3 27.5 103 568-672 234-336 (607)
41 PTZ00424 helicase 45; Provisio 99.9 5.3E-23 1.2E-27 223.9 27.3 112 569-684 266-377 (401)
42 TIGR01389 recQ ATP-dependent D 99.9 7.3E-23 1.6E-27 232.1 27.3 115 553-673 211-325 (591)
43 TIGR00643 recG ATP-dependent D 99.9 7.9E-22 1.7E-26 223.8 29.7 103 570-674 448-561 (630)
44 PLN03137 ATP-dependent DNA hel 99.9 3.1E-22 6.7E-27 227.5 25.3 105 569-675 679-783 (1195)
45 PRK10917 ATP-dependent DNA hel 99.9 1.2E-21 2.6E-26 223.8 27.8 103 569-673 470-583 (681)
46 TIGR00580 mfd transcription-re 99.9 2.2E-21 4.8E-26 224.2 28.4 108 569-680 659-769 (926)
47 KOG0331 ATP-dependent RNA heli 99.9 2E-21 4.4E-26 205.1 25.0 119 551-672 323-441 (519)
48 TIGR03817 DECH_helic helicase/ 99.9 6.2E-21 1.4E-25 218.6 25.6 116 570-689 271-394 (742)
49 PRK10689 transcription-repair 99.9 1.9E-20 4E-25 221.3 29.3 101 570-672 809-912 (1147)
50 KOG0330 ATP-dependent RNA heli 99.9 5.9E-21 1.3E-25 188.7 19.1 124 553-684 287-410 (476)
51 COG1200 RecG RecG-like helicas 99.9 8.9E-20 1.9E-24 195.6 28.8 122 583-718 494-618 (677)
52 KOG0328 Predicted ATP-dependen 99.9 2.4E-20 5.2E-25 176.5 20.6 125 553-685 253-377 (400)
53 COG0513 SrmB Superfamily II DN 99.9 1.1E-19 2.4E-24 200.6 27.3 134 552-694 259-392 (513)
54 PRK02362 ski2-like helicase; P 99.9 1.1E-19 2.5E-24 210.7 27.9 108 569-678 242-394 (737)
55 PRK13767 ATP-dependent helicas 99.9 1.3E-19 2.8E-24 212.1 28.4 104 570-675 284-394 (876)
56 COG4096 HsdR Type I site-speci 99.8 6.9E-20 1.5E-24 198.7 21.0 167 19-283 155-322 (875)
57 TIGR00348 hsdR type I site-spe 99.8 3.9E-19 8.4E-24 202.2 25.4 108 570-679 514-649 (667)
58 PRK01172 ski2-like helicase; P 99.8 2E-18 4.3E-23 199.1 30.3 100 569-671 235-368 (674)
59 TIGR01587 cas3_core CRISPR-ass 99.8 2.9E-18 6.4E-23 183.5 25.8 121 553-681 208-338 (358)
60 TIGR03714 secA2 accessory Sec 99.8 1.2E-18 2.6E-23 193.8 21.8 117 549-672 405-530 (762)
61 PRK00254 ski2-like helicase; P 99.8 9.4E-18 2E-22 194.3 30.1 105 28-158 22-129 (720)
62 COG0514 RecQ Superfamily II DN 99.8 5.1E-18 1.1E-22 183.0 22.5 111 568-682 228-338 (590)
63 TIGR02621 cas3_GSU0051 CRISPR- 99.8 1.9E-17 4.1E-22 186.2 27.6 103 569-677 271-390 (844)
64 KOG0350 DEAD-box ATP-dependent 99.8 5.3E-18 1.1E-22 172.9 20.3 135 553-697 416-554 (620)
65 KOG0333 U5 snRNP-like RNA heli 99.8 1.4E-17 3.1E-22 170.7 23.4 129 548-684 499-627 (673)
66 PRK09200 preprotein translocas 99.8 1.4E-16 3E-21 179.3 26.5 117 550-672 410-534 (790)
67 KOG0335 ATP-dependent RNA heli 99.8 4.8E-17 1E-21 169.1 21.0 150 550-702 312-467 (482)
68 PHA02653 RNA helicase NPH-II; 99.8 2.8E-16 6E-21 176.1 27.5 110 570-685 395-518 (675)
69 TIGR00963 secA preprotein tran 99.8 1.7E-17 3.7E-22 183.5 17.4 118 551-674 388-512 (745)
70 KOG0348 ATP-dependent RNA heli 99.7 4.4E-16 9.5E-21 160.1 25.4 128 553-684 408-557 (708)
71 PRK09401 reverse gyrase; Revie 99.7 1.7E-16 3.6E-21 188.4 25.9 103 553-666 316-431 (1176)
72 TIGR03158 cas3_cyano CRISPR-as 99.7 9.5E-16 2.1E-20 162.4 27.4 95 559-664 261-357 (357)
73 COG1201 Lhr Lhr-like helicases 99.7 1.9E-15 4.1E-20 169.3 27.7 120 571-696 254-375 (814)
74 PRK12898 secA preprotein trans 99.7 2.7E-15 5.8E-20 165.4 27.9 116 551-672 456-579 (656)
75 COG4889 Predicted helicase [Ge 99.7 1.8E-16 4E-21 170.6 17.1 93 5-120 138-231 (1518)
76 KOG0338 ATP-dependent RNA heli 99.7 9E-16 2E-20 156.9 19.5 107 571-681 427-533 (691)
77 KOG0343 RNA Helicase [RNA proc 99.7 2.3E-15 4.9E-20 155.4 22.4 143 552-703 299-443 (758)
78 KOG4284 DEAD box protein [Tran 99.7 1.2E-15 2.6E-20 159.9 20.4 112 553-670 259-370 (980)
79 KOG0345 ATP-dependent RNA heli 99.7 3.1E-15 6.8E-20 151.9 22.6 119 550-674 239-359 (567)
80 KOG0340 ATP-dependent RNA heli 99.7 6.8E-15 1.5E-19 144.4 24.2 118 551-671 236-353 (442)
81 PRK09751 putative ATP-dependen 99.7 3.1E-15 6.7E-20 178.2 26.3 95 570-666 244-371 (1490)
82 COG1204 Superfamily II helicas 99.7 2.6E-15 5.7E-20 170.5 24.2 108 29-160 31-139 (766)
83 KOG0336 ATP-dependent RNA heli 99.7 1E-15 2.2E-20 152.3 17.9 136 551-693 449-586 (629)
84 PRK05580 primosome assembly pr 99.7 7.3E-15 1.6E-19 167.5 27.1 96 582-679 438-549 (679)
85 COG1202 Superfamily II helicas 99.7 4.1E-15 8.8E-20 154.3 21.2 106 571-679 441-551 (830)
86 KOG0332 ATP-dependent RNA heli 99.7 1.2E-14 2.7E-19 143.4 23.0 127 551-685 315-448 (477)
87 KOG0342 ATP-dependent RNA heli 99.7 4.8E-15 1E-19 151.7 20.8 115 552-671 315-429 (543)
88 COG1197 Mfd Transcription-repa 99.7 4E-14 8.7E-19 161.0 28.5 108 569-680 802-912 (1139)
89 TIGR01054 rgy reverse gyrase. 99.6 1.1E-14 2.4E-19 173.4 24.2 88 554-651 315-409 (1171)
90 cd00079 HELICc Helicase superf 99.6 9.9E-16 2.2E-20 138.6 11.7 121 551-675 11-131 (131)
91 TIGR00595 priA primosomal prot 99.6 2.1E-14 4.7E-19 157.8 24.5 96 583-680 271-382 (505)
92 KOG0339 ATP-dependent RNA heli 99.6 1.5E-14 3.2E-19 147.9 20.7 127 551-684 452-578 (731)
93 KOG0326 ATP-dependent RNA heli 99.6 1.9E-15 4.2E-20 145.9 12.9 114 550-669 306-419 (459)
94 PF04851 ResIII: Type III rest 99.6 8E-16 1.7E-20 148.2 10.2 165 28-282 2-183 (184)
95 COG1205 Distinct helicase fami 99.6 3.5E-14 7.6E-19 163.8 24.0 131 554-690 292-431 (851)
96 TIGR01970 DEAH_box_HrpB ATP-de 99.6 1.5E-13 3.2E-18 158.1 27.3 107 570-681 209-336 (819)
97 COG4098 comFA Superfamily II D 99.6 9.7E-13 2.1E-17 129.0 27.1 138 556-700 293-434 (441)
98 PRK14701 reverse gyrase; Provi 99.6 9.8E-14 2.1E-18 168.6 24.2 104 555-669 320-446 (1638)
99 KOG0341 DEAD-box protein abstr 99.6 1.1E-14 2.4E-19 144.0 13.1 128 552-688 408-535 (610)
100 PRK11664 ATP-dependent RNA hel 99.6 1E-13 2.2E-18 159.8 23.0 108 570-682 212-340 (812)
101 PRK09694 helicase Cas3; Provis 99.6 1.8E-13 4E-18 157.2 23.9 98 569-669 559-665 (878)
102 KOG0344 ATP-dependent RNA heli 99.6 1.2E-13 2.5E-18 145.0 18.7 122 551-680 372-494 (593)
103 PF00271 Helicase_C: Helicase 99.5 8.6E-15 1.9E-19 119.1 6.4 78 588-667 1-78 (78)
104 PRK13104 secA preprotein trans 99.5 5.4E-13 1.2E-17 150.2 22.7 120 550-675 426-583 (896)
105 PRK12906 secA preprotein trans 99.5 2.9E-13 6.2E-18 151.6 20.1 117 551-673 423-547 (796)
106 KOG0346 RNA helicase [RNA proc 99.5 1E-12 2.2E-17 132.7 19.8 102 572-674 270-405 (569)
107 PRK12904 preprotein translocas 99.5 1.2E-12 2.6E-17 147.3 21.1 119 551-675 413-569 (830)
108 smart00487 DEXDc DEAD-like hel 99.5 2.8E-13 6.1E-18 131.9 13.1 162 27-285 6-174 (201)
109 KOG0952 DNA/RNA helicase MER3/ 99.5 4.7E-12 1E-16 140.5 23.4 95 50-154 127-222 (1230)
110 cd00046 DEXDc DEAD-like helica 99.5 2.7E-13 5.8E-18 124.1 11.6 138 50-281 1-144 (144)
111 KOG0347 RNA helicase [RNA proc 99.5 6.3E-13 1.4E-17 137.7 14.4 103 568-674 462-564 (731)
112 TIGR00631 uvrb excinuclease AB 99.5 9.9E-11 2.1E-15 132.1 32.9 132 551-689 425-563 (655)
113 KOG0327 Translation initiation 99.5 1.7E-12 3.6E-17 129.8 16.2 120 553-682 252-371 (397)
114 TIGR01967 DEAH_box_HrpA ATP-de 99.5 5.7E-12 1.2E-16 148.6 23.4 122 554-683 264-406 (1283)
115 COG0556 UvrB Helicase subunit 99.4 7.4E-11 1.6E-15 122.6 27.8 135 553-692 431-570 (663)
116 PRK13107 preprotein translocas 99.4 1.1E-11 2.4E-16 139.3 21.6 119 550-674 431-586 (908)
117 KOG0334 RNA helicase [RNA proc 99.4 9.9E-12 2.1E-16 139.1 20.8 124 550-680 596-719 (997)
118 KOG0351 ATP-dependent DNA heli 99.4 3.6E-12 7.7E-17 146.3 17.6 109 567-677 482-590 (941)
119 smart00490 HELICc helicase sup 99.4 6E-13 1.3E-17 109.3 8.4 81 585-667 2-82 (82)
120 PRK11131 ATP-dependent RNA hel 99.4 4.9E-11 1.1E-15 140.4 26.0 121 555-683 272-413 (1294)
121 PRK05298 excinuclease ABC subu 99.4 1E-09 2.2E-14 125.0 34.7 112 551-666 429-545 (652)
122 cd00268 DEADc DEAD-box helicas 99.4 5.8E-12 1.3E-16 123.4 12.2 111 29-159 21-135 (203)
123 KOG0352 ATP-dependent DNA heli 99.3 4E-11 8.6E-16 120.7 16.7 109 572-684 257-365 (641)
124 PF00270 DEAD: DEAD/DEAH box h 99.3 6.2E-12 1.3E-16 119.2 10.1 107 32-160 2-112 (169)
125 KOG0337 ATP-dependent RNA heli 99.3 3.3E-12 7.1E-17 128.4 8.2 124 551-681 245-368 (529)
126 KOG0353 ATP-dependent DNA heli 99.3 7.4E-11 1.6E-15 116.8 17.3 109 568-678 315-466 (695)
127 COG1203 CRISPR-associated heli 99.3 4.7E-10 1E-14 129.6 23.1 125 568-696 438-567 (733)
128 KOG1513 Nuclear helicase MOP-3 99.3 5.8E-10 1.3E-14 120.1 21.7 92 612-705 849-948 (1300)
129 PRK12900 secA preprotein trans 99.2 2.9E-09 6.4E-14 120.6 27.6 117 550-672 580-704 (1025)
130 PF13872 AAA_34: P-loop contai 99.2 1.1E-10 2.4E-15 115.8 12.7 174 28-289 36-227 (303)
131 PRK12326 preprotein translocas 99.2 2.2E-09 4.7E-14 118.2 22.8 130 550-690 409-553 (764)
132 COG4581 Superfamily II RNA hel 99.2 4.3E-09 9.2E-14 120.6 25.1 165 26-297 116-284 (1041)
133 KOG0951 RNA helicase BRR2, DEA 99.2 2.2E-09 4.8E-14 121.3 22.0 111 30-154 310-422 (1674)
134 PRK12899 secA preprotein trans 99.2 2.5E-09 5.5E-14 120.8 22.3 117 551-674 551-676 (970)
135 TIGR00596 rad1 DNA repair prot 99.1 4.7E-09 1E-13 120.1 21.9 151 549-702 267-536 (814)
136 COG1198 PriA Primosomal protei 99.1 6.9E-09 1.5E-13 116.3 22.3 106 28-156 197-309 (730)
137 KOG0947 Cytoplasmic exosomal R 99.1 1.1E-08 2.4E-13 113.0 21.0 101 27-160 295-396 (1248)
138 PRK13103 secA preprotein trans 99.0 7.3E-09 1.6E-13 117.0 18.5 120 550-675 431-587 (913)
139 COG1110 Reverse gyrase [DNA re 99.0 5.7E-08 1.2E-12 108.8 24.8 88 552-650 322-416 (1187)
140 TIGR01407 dinG_rel DnaQ family 98.9 2.8E-07 6.1E-12 109.1 28.2 114 555-674 660-809 (850)
141 COG0610 Type I site-specific r 98.9 1.1E-07 2.5E-12 112.1 22.2 70 607-678 578-650 (962)
142 PRK12903 secA preprotein trans 98.9 1E-07 2.2E-12 106.9 20.2 120 550-675 408-535 (925)
143 KOG0950 DNA polymerase theta/e 98.8 1.7E-07 3.7E-12 104.6 16.8 109 29-160 223-332 (1008)
144 KOG0948 Nuclear exosomal RNA h 98.6 6.4E-07 1.4E-11 97.0 15.7 101 27-160 127-228 (1041)
145 KOG0949 Predicted helicase, DE 98.6 6.8E-07 1.5E-11 99.5 15.6 169 30-295 512-683 (1330)
146 PF07652 Flavi_DEAD: Flaviviru 98.6 1.8E-07 4E-12 82.5 8.1 81 52-159 7-88 (148)
147 PF11496 HDA2-3: Class II hist 98.6 3.5E-06 7.5E-11 85.9 18.5 220 387-691 5-255 (297)
148 CHL00122 secA preprotein trans 98.5 3.1E-06 6.7E-11 95.8 18.3 84 551-639 407-491 (870)
149 PF13871 Helicase_C_4: Helicas 98.5 4.5E-07 9.8E-12 90.2 9.8 96 611-708 52-155 (278)
150 KOG0922 DEAH-box RNA helicase 98.5 2.2E-05 4.7E-10 85.2 21.9 115 568-685 256-394 (674)
151 PRK07246 bifunctional ATP-depe 98.5 2.2E-05 4.9E-10 91.9 23.7 113 555-674 634-778 (820)
152 KOG0329 ATP-dependent RNA heli 98.5 4.9E-06 1.1E-10 79.0 14.7 45 626-670 302-346 (387)
153 PRK12901 secA preprotein trans 98.5 1.6E-05 3.5E-10 91.0 21.2 119 550-674 610-736 (1112)
154 PRK12902 secA preprotein trans 98.4 7.5E-06 1.6E-10 92.6 18.3 84 551-639 422-506 (939)
155 PRK15483 type III restriction- 98.4 2.1E-06 4.5E-11 98.8 13.0 69 622-691 501-577 (986)
156 KOG0349 Putative DEAD-box RNA 98.3 1.4E-06 3.1E-11 88.4 8.6 96 569-666 504-602 (725)
157 COG1643 HrpA HrpA-like helicas 98.3 4.5E-05 9.7E-10 87.6 20.4 120 558-684 248-390 (845)
158 PF02399 Herpes_ori_bp: Origin 98.2 0.00037 8.1E-09 78.4 25.4 109 555-675 270-384 (824)
159 KOG0920 ATP-dependent RNA heli 98.2 0.0003 6.5E-09 80.8 24.8 128 552-684 395-547 (924)
160 KOG0953 Mitochondrial RNA heli 98.1 1.6E-05 3.4E-10 84.0 9.5 100 568-671 356-466 (700)
161 KOG0924 mRNA splicing factor A 97.9 0.00026 5.7E-09 76.5 15.2 93 594-688 597-704 (1042)
162 COG0653 SecA Preprotein transl 97.9 0.00028 6.2E-09 79.8 16.2 122 550-678 411-543 (822)
163 TIGR02562 cas3_yersinia CRISPR 97.8 0.0031 6.7E-08 73.3 23.6 87 30-132 409-498 (1110)
164 KOG0926 DEAH-box RNA helicase 97.7 0.00068 1.5E-08 74.8 15.0 63 615-680 622-703 (1172)
165 PF13086 AAA_11: AAA domain; P 97.6 0.00028 6.1E-09 70.4 10.1 73 29-117 1-75 (236)
166 TIGR03117 cas_csf4 CRISPR-asso 97.6 0.00027 5.9E-09 79.3 10.3 97 553-653 454-563 (636)
167 KOG1802 RNA helicase nonsense 97.5 0.00021 4.6E-09 77.1 7.8 80 29-135 410-490 (935)
168 COG3587 Restriction endonuclea 97.5 0.00016 3.6E-09 80.3 7.0 46 621-666 482-527 (985)
169 KOG0923 mRNA splicing factor A 97.5 0.0046 9.9E-08 67.2 16.8 77 597-680 509-605 (902)
170 PRK08074 bifunctional ATP-depe 97.2 0.0022 4.8E-08 76.8 11.3 117 554-673 737-887 (928)
171 PF07517 SecA_DEAD: SecA DEAD- 97.1 0.0021 4.6E-08 64.3 9.3 104 27-159 75-182 (266)
172 PF02562 PhoH: PhoH-like prote 97.1 0.00067 1.5E-08 65.1 5.2 43 29-76 4-46 (205)
173 PF06862 DUF1253: Protein of u 97.1 0.52 1.1E-05 50.8 26.8 128 552-680 281-414 (442)
174 PF13307 Helicase_C_2: Helicas 97.0 0.0027 5.9E-08 59.6 8.4 100 569-674 8-145 (167)
175 PRK10536 hypothetical protein; 97.0 0.002 4.3E-08 63.7 7.3 39 245-285 178-216 (262)
176 PRK14873 primosome assembly pr 96.8 0.0039 8.5E-08 71.1 8.5 81 53-154 164-251 (665)
177 KOG1803 DNA helicase [Replicat 96.7 0.0034 7.5E-08 67.8 6.6 74 20-116 176-250 (649)
178 TIGR00376 DNA helicase, putati 96.6 0.0098 2.1E-07 68.0 10.5 70 26-118 154-224 (637)
179 PRK08074 bifunctional ATP-depe 96.6 0.014 3E-07 70.1 12.1 87 28-134 256-347 (928)
180 KOG0925 mRNA splicing factor A 96.6 0.043 9.2E-07 57.8 13.8 108 570-683 253-389 (699)
181 COG1199 DinG Rad3-related DNA 96.5 0.021 4.6E-07 66.4 12.3 117 553-674 463-612 (654)
182 PF15227 zf-C3HC4_4: zinc fing 96.4 0.0019 4.1E-08 44.7 2.0 40 469-508 1-42 (42)
183 PF09848 DUF2075: Uncharacteri 96.4 0.0079 1.7E-07 64.0 7.8 50 52-118 4-54 (352)
184 KOG4150 Predicted ATP-dependen 96.4 0.021 4.5E-07 61.0 10.1 116 549-668 506-629 (1034)
185 PF13401 AAA_22: AAA domain; P 96.4 0.004 8.6E-08 55.8 4.3 36 245-282 89-126 (131)
186 KOG1805 DNA replication helica 96.3 0.013 2.9E-07 66.6 8.6 78 18-118 654-736 (1100)
187 PF05876 Terminase_GpA: Phage 96.3 0.017 3.7E-07 65.0 9.5 77 17-114 4-81 (557)
188 PLN03208 E3 ubiquitin-protein 96.2 0.0058 1.3E-07 57.0 4.6 56 465-520 17-86 (193)
189 KOG1132 Helicase of the DEAD s 96.0 0.03 6.6E-07 63.3 9.4 98 21-119 13-134 (945)
190 smart00489 DEXDc3 DEAD-like he 96.0 0.023 5.1E-07 58.4 8.1 79 26-118 5-84 (289)
191 smart00488 DEXDc2 DEAD-like he 96.0 0.023 5.1E-07 58.4 8.1 79 26-118 5-84 (289)
192 PRK11747 dinG ATP-dependent DN 96.0 0.042 9E-07 63.8 11.0 92 553-651 519-616 (697)
193 TIGR00604 rad3 DNA repair heli 95.9 0.06 1.3E-06 62.9 12.2 118 554-674 507-669 (705)
194 smart00492 HELICc3 helicase su 95.7 0.074 1.6E-06 48.1 9.3 47 604-651 31-79 (141)
195 PRK11747 dinG ATP-dependent DN 95.7 0.086 1.9E-06 61.3 12.0 39 28-66 24-66 (697)
196 PF13604 AAA_30: AAA domain; P 95.6 0.032 7E-07 53.8 7.2 57 29-107 1-57 (196)
197 TIGR01448 recD_rel helicase, p 95.4 0.056 1.2E-06 62.9 9.4 66 27-114 321-386 (720)
198 PF12340 DUF3638: Protein of u 95.4 0.024 5.2E-07 55.0 5.0 74 27-120 21-94 (229)
199 TIGR01447 recD exodeoxyribonuc 95.2 0.078 1.7E-06 59.9 9.3 67 32-117 148-215 (586)
200 PRK10875 recD exonuclease V su 95.2 0.07 1.5E-06 60.5 8.9 59 30-108 153-211 (615)
201 KOG2164 Predicted E3 ubiquitin 95.1 0.011 2.3E-07 62.8 2.0 50 466-515 186-238 (513)
202 PF13923 zf-C3HC4_2: Zinc fing 95.1 0.01 2.2E-07 40.3 1.3 38 469-508 1-39 (39)
203 PF13920 zf-C3HC4_3: Zinc fing 95.0 0.011 2.5E-07 42.7 1.3 46 466-513 2-48 (50)
204 smart00491 HELICc2 helicase su 95.0 0.13 2.9E-06 46.5 8.5 44 608-651 32-80 (142)
205 KOG0951 RNA helicase BRR2, DEA 94.9 5.4 0.00012 47.8 22.6 83 50-156 1160-1247(1674)
206 PF00097 zf-C3HC4: Zinc finger 94.5 0.018 3.8E-07 39.7 1.2 40 469-508 1-41 (41)
207 PRK07003 DNA polymerase III su 94.5 0.18 3.9E-06 57.5 9.5 44 33-76 20-65 (830)
208 smart00504 Ubox Modified RING 94.3 0.042 9E-07 41.9 3.0 45 467-513 2-46 (63)
209 KOG0317 Predicted E3 ubiquitin 94.3 0.03 6.5E-07 55.0 2.6 52 460-513 233-284 (293)
210 KOG0952 DNA/RNA helicase MER3/ 94.3 0.071 1.5E-06 61.5 5.8 87 50-154 944-1031(1230)
211 PRK06526 transposase; Provisio 94.1 0.095 2.1E-06 52.7 5.9 26 50-75 99-124 (254)
212 KOG0320 Predicted E3 ubiquitin 94.0 0.025 5.5E-07 51.3 1.5 48 465-514 130-179 (187)
213 TIGR00599 rad18 DNA repair pro 94.0 0.033 7.2E-07 58.7 2.6 48 465-514 25-72 (397)
214 TIGR02881 spore_V_K stage V sp 94.0 0.17 3.7E-06 51.3 7.7 24 50-73 43-66 (261)
215 COG3421 Uncharacterized protei 93.9 0.14 2.9E-06 55.7 6.8 88 54-159 2-97 (812)
216 PF14634 zf-RING_5: zinc-RING 93.7 0.053 1.1E-06 37.9 2.3 39 469-509 2-43 (44)
217 TIGR03117 cas_csf4 CRISPR-asso 93.7 0.62 1.3E-05 52.9 11.9 85 34-136 2-90 (636)
218 KOG0823 Predicted E3 ubiquitin 93.6 0.041 8.8E-07 52.4 2.1 59 462-520 43-102 (230)
219 PRK12723 flagellar biosynthesi 93.5 0.49 1.1E-05 50.5 10.3 56 243-298 254-314 (388)
220 cd00009 AAA The AAA+ (ATPases 93.4 0.44 9.6E-06 42.8 8.8 25 50-74 20-44 (151)
221 TIGR03420 DnaA_homol_Hda DnaA 93.4 0.58 1.3E-05 46.2 10.2 25 50-74 39-63 (226)
222 PRK08084 DNA replication initi 93.3 0.86 1.9E-05 45.4 11.3 24 50-73 46-69 (235)
223 KOG0978 E3 ubiquitin ligase in 93.2 0.028 6.2E-07 62.8 0.4 47 467-514 644-690 (698)
224 PLN03025 replication factor C 93.2 0.67 1.5E-05 48.6 10.8 56 243-298 99-155 (319)
225 PRK04296 thymidine kinase; Pro 93.0 0.13 2.7E-06 49.4 4.6 23 53-75 6-28 (190)
226 PF13445 zf-RING_UBOX: RING-ty 92.9 0.033 7.2E-07 38.5 0.3 31 469-500 1-35 (43)
227 TIGR02880 cbbX_cfxQ probable R 92.8 0.22 4.9E-06 51.1 6.3 25 51-75 60-84 (284)
228 TIGR00604 rad3 DNA repair heli 92.7 0.22 4.8E-06 58.3 6.9 76 26-118 6-83 (705)
229 PF13245 AAA_19: Part of AAA d 92.6 0.21 4.6E-06 39.7 4.5 51 50-115 11-62 (76)
230 PRK12323 DNA polymerase III su 92.5 0.74 1.6E-05 51.9 10.1 26 50-75 38-64 (700)
231 PRK14956 DNA polymerase III su 92.4 0.74 1.6E-05 50.2 9.7 43 33-75 22-66 (484)
232 PHA02929 N1R/p28-like protein; 92.3 0.1 2.3E-06 51.1 3.0 47 465-513 173-227 (238)
233 COG5574 PEX10 RING-finger-cont 92.3 0.063 1.4E-06 52.1 1.4 50 464-513 213-262 (271)
234 PRK14949 DNA polymerase III su 92.3 0.63 1.4E-05 54.3 9.6 42 34-75 21-64 (944)
235 PRK14960 DNA polymerase III su 92.2 0.85 1.8E-05 51.6 10.1 25 51-75 39-63 (702)
236 PHA02533 17 large terminase pr 92.1 1.2 2.6E-05 49.9 11.2 41 26-71 56-96 (534)
237 PRK00149 dnaA chromosomal repl 91.9 1.1 2.5E-05 49.3 10.9 26 50-75 149-174 (450)
238 PRK05707 DNA polymerase III su 91.9 0.5 1.1E-05 49.5 7.6 48 29-77 3-50 (328)
239 smart00382 AAA ATPases associa 91.9 0.44 9.6E-06 42.4 6.5 46 50-114 3-48 (148)
240 PRK08181 transposase; Validate 91.8 1.2 2.7E-05 45.0 10.1 46 29-75 87-132 (269)
241 CHL00181 cbbX CbbX; Provisiona 91.5 0.42 9E-06 49.1 6.4 23 52-74 62-84 (287)
242 PRK14087 dnaA chromosomal repl 91.4 1.1 2.4E-05 49.3 10.0 24 50-73 142-165 (450)
243 PRK05703 flhF flagellar biosyn 91.3 1.1 2.3E-05 48.8 9.6 55 243-298 299-359 (424)
244 PRK14964 DNA polymerase III su 91.2 0.98 2.1E-05 49.7 9.3 26 50-75 36-61 (491)
245 PRK14958 DNA polymerase III su 91.1 0.52 1.1E-05 52.6 7.1 44 33-76 20-65 (509)
246 KOG2879 Predicted E3 ubiquitin 91.0 0.2 4.3E-06 48.9 3.2 53 461-513 234-287 (298)
247 TIGR00362 DnaA chromosomal rep 90.8 1.4 3E-05 48.0 10.1 26 50-75 137-162 (405)
248 TIGR03015 pepcterm_ATPase puta 90.8 0.73 1.6E-05 46.9 7.6 43 31-73 25-67 (269)
249 PF14835 zf-RING_6: zf-RING of 90.7 0.21 4.4E-06 37.4 2.4 43 467-513 8-51 (65)
250 smart00184 RING Ring finger. E 90.5 0.2 4.3E-06 33.3 2.1 39 469-508 1-39 (39)
251 COG1199 DinG Rad3-related DNA 90.4 0.43 9.3E-06 55.6 6.0 72 28-118 14-86 (654)
252 COG1875 NYN ribonuclease and A 90.3 0.23 4.9E-06 51.1 3.0 37 245-283 353-389 (436)
253 PRK14086 dnaA chromosomal repl 90.2 2 4.3E-05 48.4 10.6 25 50-74 315-339 (617)
254 PRK06645 DNA polymerase III su 90.2 1.9 4.1E-05 47.9 10.4 43 33-75 25-69 (507)
255 PRK07994 DNA polymerase III su 90.1 1.4 3E-05 50.3 9.4 43 34-76 21-65 (647)
256 PRK06893 DNA replication initi 90.0 1.9 4.2E-05 42.7 9.4 23 52-74 42-64 (229)
257 cd00162 RING RING-finger (Real 89.8 0.26 5.7E-06 34.1 2.3 42 469-511 2-44 (45)
258 PHA02926 zinc finger-like prot 89.8 0.23 5.1E-06 47.0 2.5 52 463-514 167-231 (242)
259 PRK14088 dnaA chromosomal repl 89.7 2.1 4.5E-05 47.0 10.2 26 50-75 131-156 (440)
260 TIGR00570 cdk7 CDK-activating 89.7 0.34 7.5E-06 49.0 3.8 50 466-516 3-57 (309)
261 PRK08727 hypothetical protein; 89.6 1.3 2.9E-05 43.9 8.0 25 50-74 42-66 (233)
262 PRK14952 DNA polymerase III su 89.6 1.8 3.8E-05 49.0 9.7 44 33-76 17-62 (584)
263 PRK07764 DNA polymerase III su 89.5 2.4 5.3E-05 50.0 11.1 28 49-76 36-64 (824)
264 PRK14974 cell division protein 89.5 0.86 1.9E-05 47.7 6.7 23 52-74 143-165 (336)
265 KOG0991 Replication factor C, 89.2 0.47 1E-05 45.6 4.1 28 47-74 46-73 (333)
266 PRK07940 DNA polymerase III su 89.1 0.46 1E-05 51.0 4.6 27 50-76 37-63 (394)
267 PRK09112 DNA polymerase III su 89.1 0.76 1.6E-05 48.6 6.1 43 34-76 28-72 (351)
268 PRK14961 DNA polymerase III su 89.1 1.7 3.7E-05 46.4 8.9 42 33-74 20-63 (363)
269 PRK08769 DNA polymerase III su 89.1 1.3 2.9E-05 46.0 7.8 50 27-76 2-53 (319)
270 PRK14955 DNA polymerase III su 89.0 4.5 9.8E-05 43.8 12.1 25 52-76 41-65 (397)
271 PRK09111 DNA polymerase III su 88.8 2.4 5.1E-05 48.3 10.1 44 33-76 28-73 (598)
272 PF05621 TniB: Bacterial TniB 88.8 2.8 6.1E-05 42.7 9.6 43 239-281 141-189 (302)
273 PRK14962 DNA polymerase III su 88.8 1.8 4E-05 47.7 9.0 24 52-75 39-62 (472)
274 PRK08116 hypothetical protein; 88.7 1.4 3E-05 44.8 7.4 26 50-75 115-140 (268)
275 PRK00440 rfc replication facto 88.6 2.9 6.3E-05 43.7 10.2 24 50-73 39-62 (319)
276 TIGR02768 TraA_Ti Ti-type conj 88.6 2.2 4.8E-05 50.1 10.0 58 28-108 351-408 (744)
277 PRK06835 DNA replication prote 88.5 4.3 9.2E-05 42.5 11.1 47 29-75 160-209 (329)
278 PRK12402 replication factor C 88.3 1.5 3.2E-05 46.4 7.7 26 50-75 37-62 (337)
279 PRK08691 DNA polymerase III su 87.9 5.3 0.00011 45.7 11.9 25 51-75 40-64 (709)
280 PRK12422 chromosomal replicati 87.7 2.1 4.4E-05 47.0 8.5 25 50-74 142-166 (445)
281 PRK05642 DNA replication initi 87.6 1.8 3.9E-05 43.0 7.4 23 50-72 46-68 (234)
282 PF02456 Adeno_IVa2: Adenoviru 87.1 1.5 3.3E-05 44.2 6.2 82 52-159 90-179 (369)
283 PRK10917 ATP-dependent DNA hel 86.8 3.5 7.6E-05 48.1 10.2 95 549-646 291-389 (681)
284 PRK14969 DNA polymerase III su 86.5 1.5 3.2E-05 49.3 6.7 26 50-75 38-64 (527)
285 KOG0740 AAA+-type ATPase [Post 86.5 1.2 2.6E-05 47.6 5.6 51 47-119 184-234 (428)
286 PRK11889 flhF flagellar biosyn 86.3 4.1 8.9E-05 43.3 9.3 25 50-74 242-266 (436)
287 COG4098 comFA Superfamily II D 86.1 1.6 3.4E-05 44.6 5.8 137 463-608 36-184 (441)
288 PF00448 SRP54: SRP54-type pro 86.0 1.4 3.1E-05 42.4 5.5 57 243-299 83-143 (196)
289 PHA02544 44 clamp loader, smal 86.0 4.9 0.00011 42.0 10.1 23 50-72 43-66 (316)
290 cd01121 Sms Sms (bacterial rad 85.8 3.7 7.9E-05 43.8 8.9 23 52-74 85-107 (372)
291 PRK06964 DNA polymerase III su 85.8 1.9 4.1E-05 45.3 6.7 48 30-77 2-49 (342)
292 PRK14954 DNA polymerase III su 85.8 3.7 8.1E-05 46.8 9.4 44 33-76 20-65 (620)
293 PRK05986 cob(I)alamin adenolsy 85.7 1.4 3E-05 41.8 5.0 56 242-297 114-173 (191)
294 PRK14959 DNA polymerase III su 85.7 6.6 0.00014 44.5 11.2 26 50-75 39-64 (624)
295 PRK14948 DNA polymerase III su 85.6 5.8 0.00013 45.5 10.9 44 33-76 20-65 (620)
296 PRK08451 DNA polymerase III su 85.5 5.8 0.00013 44.3 10.5 26 50-75 36-62 (535)
297 PRK04195 replication factor C 85.2 6.2 0.00013 44.0 10.8 25 49-73 39-63 (482)
298 PRK14951 DNA polymerase III su 85.1 3.5 7.6E-05 46.9 8.7 42 34-75 21-64 (618)
299 PRK14963 DNA polymerase III su 84.9 5 0.00011 44.8 9.7 42 34-75 19-62 (504)
300 COG4626 Phage terminase-like p 84.9 2.9 6.3E-05 45.9 7.6 67 24-105 56-127 (546)
301 PF04564 U-box: U-box domain; 84.8 1.9 4E-05 34.0 4.7 48 466-514 4-51 (73)
302 PRK14965 DNA polymerase III su 84.7 7.9 0.00017 44.1 11.5 43 34-76 21-65 (576)
303 COG5432 RAD18 RING-finger-cont 84.7 0.49 1.1E-05 46.3 1.6 44 468-513 27-70 (391)
304 PRK07471 DNA polymerase III su 84.7 3.2 6.9E-05 44.2 7.8 45 33-77 23-69 (365)
305 PRK05896 DNA polymerase III su 84.5 1.8 4E-05 48.7 6.1 27 50-76 39-65 (605)
306 PRK11054 helD DNA helicase IV; 84.3 1.6 3.4E-05 50.6 5.7 87 28-158 195-282 (684)
307 COG3973 Superfamily I DNA and 84.2 1.8 3.9E-05 47.7 5.6 72 52-158 229-300 (747)
308 TIGR02688 conserved hypothetic 84.2 2.2 4.9E-05 45.6 6.2 23 50-72 210-232 (449)
309 PRK14950 DNA polymerase III su 84.2 5.1 0.00011 45.8 9.7 42 33-74 20-63 (585)
310 PRK06871 DNA polymerase III su 84.0 8.9 0.00019 40.0 10.5 48 30-77 3-52 (325)
311 PF00580 UvrD-helicase: UvrD/R 83.8 1.2 2.6E-05 46.3 4.3 68 30-119 1-69 (315)
312 cd01120 RecA-like_NTPases RecA 83.8 6.3 0.00014 36.0 8.8 23 53-75 3-25 (165)
313 PRK06647 DNA polymerase III su 83.7 4.7 0.0001 45.6 9.0 24 52-75 41-64 (563)
314 KOG0287 Postreplication repair 83.7 0.4 8.6E-06 48.1 0.5 44 468-513 25-68 (442)
315 COG1484 DnaC DNA replication p 83.6 2.8 6.1E-05 42.2 6.5 65 33-117 90-154 (254)
316 PRK09183 transposase/IS protei 83.4 4.4 9.6E-05 40.9 7.9 23 50-72 103-125 (259)
317 PF13639 zf-RING_2: Ring finge 83.3 0.32 6.9E-06 34.0 -0.3 39 469-509 3-44 (44)
318 KOG0824 Predicted E3 ubiquitin 83.2 0.82 1.8E-05 45.4 2.4 58 465-523 6-63 (324)
319 PF13177 DNA_pol3_delta2: DNA 82.8 3.1 6.8E-05 38.6 6.1 45 34-78 2-48 (162)
320 KOG0739 AAA+-type ATPase [Post 82.7 3.3 7.2E-05 41.5 6.3 48 49-119 166-214 (439)
321 COG1200 RecG RecG-like helicas 82.5 17 0.00037 41.1 12.4 89 554-646 298-390 (677)
322 PRK05563 DNA polymerase III su 82.4 8.7 0.00019 43.6 10.6 24 52-75 41-64 (559)
323 PRK13889 conjugal transfer rel 82.4 5.1 0.00011 48.1 9.0 59 28-109 345-403 (988)
324 PF06733 DEAD_2: DEAD_2; Inte 82.2 0.65 1.4E-05 43.8 1.3 17 141-157 117-133 (174)
325 COG2256 MGS1 ATPase related to 82.2 1.1 2.4E-05 46.9 3.0 24 47-70 46-69 (436)
326 PF00004 AAA: ATPase family as 82.1 9.8 0.00021 33.3 9.0 21 53-73 2-22 (132)
327 TIGR00595 priA primosomal prot 82.1 10 0.00022 42.5 10.8 97 548-649 5-102 (505)
328 PRK05580 primosome assembly pr 81.9 12 0.00026 43.6 11.7 96 549-649 171-267 (679)
329 PF03354 Terminase_1: Phage Te 81.6 4.9 0.00011 44.8 8.1 43 32-74 1-47 (477)
330 PRK08699 DNA polymerase III su 81.5 5.3 0.00011 41.8 7.8 47 30-76 2-48 (325)
331 PRK06090 DNA polymerase III su 81.1 3.7 8E-05 42.7 6.4 49 29-77 3-53 (319)
332 CHL00095 clpC Clp protease ATP 81.1 4.6 0.0001 48.2 8.1 24 50-73 201-224 (821)
333 KOG1131 RNA polymerase II tran 81.0 3.4 7.3E-05 44.6 6.0 72 29-117 16-89 (755)
334 TIGR00643 recG ATP-dependent D 80.9 8 0.00017 44.7 9.8 95 549-646 265-363 (630)
335 PRK14722 flhF flagellar biosyn 80.8 6.7 0.00014 41.7 8.3 52 244-296 216-272 (374)
336 COG0464 SpoVK ATPases of the A 80.1 2.7 5.8E-05 47.1 5.5 69 29-119 249-324 (494)
337 PHA03368 DNA packaging termina 80.1 7.1 0.00015 44.1 8.4 40 239-281 348-390 (738)
338 PF10593 Z1: Z1 domain; Inter 79.6 15 0.00032 36.6 9.9 108 576-692 93-203 (239)
339 PRK14957 DNA polymerase III su 79.6 9.3 0.0002 42.9 9.4 24 52-75 41-64 (546)
340 PRK13341 recombination factor 79.4 5.4 0.00012 46.5 7.7 26 47-72 50-75 (725)
341 KOG1807 Helicases [Replication 79.3 4.8 0.0001 45.6 6.7 78 23-118 372-450 (1025)
342 PRK04132 replication factor C 79.2 5.7 0.00012 46.8 7.8 56 243-301 630-689 (846)
343 smart00488 DEXDc2 DEAD-like he 78.9 1.4 3.1E-05 45.3 2.6 17 141-157 209-225 (289)
344 smart00489 DEXDc3 DEAD-like he 78.9 1.4 3.1E-05 45.3 2.6 17 141-157 209-225 (289)
345 PRK13826 Dtr system oriT relax 78.9 10 0.00023 46.0 10.0 58 28-108 380-437 (1102)
346 cd00561 CobA_CobO_BtuR ATP:cor 78.6 1.8 4E-05 39.8 2.9 50 243-292 95-148 (159)
347 KOG1133 Helicase of the DEAD s 78.5 21 0.00045 40.4 11.2 43 26-69 12-54 (821)
348 PF00308 Bac_DnaA: Bacterial d 78.3 15 0.00032 36.0 9.5 26 50-75 35-60 (219)
349 PF01695 IstB_IS21: IstB-like 77.6 1.1 2.4E-05 42.4 1.3 26 50-75 48-73 (178)
350 PTZ00112 origin recognition co 77.2 21 0.00045 42.1 11.1 46 29-74 758-806 (1164)
351 TIGR02640 gas_vesic_GvpN gas v 76.9 4.7 0.0001 40.8 5.7 39 32-71 5-43 (262)
352 KOG1785 Tyrosine kinase negati 76.3 1.1 2.3E-05 46.0 0.8 49 467-515 370-418 (563)
353 PRK13342 recombination factor 76.0 8.8 0.00019 41.8 7.9 24 49-72 36-59 (413)
354 COG1419 FlhF Flagellar GTP-bin 75.9 18 0.00038 38.6 9.5 55 244-300 282-342 (407)
355 PRK14971 DNA polymerase III su 75.8 25 0.00053 40.4 11.6 24 52-75 42-65 (614)
356 PHA03372 DNA packaging termina 75.7 7.1 0.00015 43.5 6.8 39 239-280 295-336 (668)
357 COG5152 Uncharacterized conser 75.6 1.1 2.5E-05 41.2 0.7 48 462-511 192-239 (259)
358 PRK07952 DNA replication prote 75.2 5.5 0.00012 39.7 5.5 44 32-75 79-125 (244)
359 PRK10865 protein disaggregatio 75.0 9.9 0.00021 45.6 8.5 41 34-74 183-224 (857)
360 PRK14953 DNA polymerase III su 75.0 18 0.00039 40.2 10.0 42 33-74 20-63 (486)
361 COG1702 PhoH Phosphate starvat 74.7 4.8 0.00011 41.5 4.9 39 245-285 245-283 (348)
362 TIGR02639 ClpA ATP-dependent C 74.7 12 0.00027 44.0 9.1 25 49-73 203-227 (731)
363 TIGR00678 holB DNA polymerase 74.2 19 0.0004 34.3 8.8 27 50-76 15-41 (188)
364 PRK07133 DNA polymerase III su 73.6 19 0.00041 41.8 9.8 24 52-75 43-66 (725)
365 COG1435 Tdk Thymidine kinase [ 73.3 4.9 0.00011 38.0 4.2 33 244-279 83-117 (201)
366 KOG2177 Predicted E3 ubiquitin 73.3 1.6 3.4E-05 45.8 1.2 44 464-509 11-54 (386)
367 PRK06305 DNA polymerase III su 72.8 15 0.00032 40.5 8.6 44 33-76 21-66 (451)
368 COG5236 Uncharacterized conser 72.8 3.9 8.4E-05 41.3 3.6 62 456-517 51-112 (493)
369 COG3972 Superfamily I DNA and 72.7 17 0.00037 39.3 8.4 55 550-604 453-512 (660)
370 PRK07993 DNA polymerase III su 72.4 16 0.00035 38.4 8.4 49 29-77 2-52 (334)
371 TIGR03345 VI_ClpV1 type VI sec 72.2 15 0.00032 44.1 8.9 40 34-73 192-232 (852)
372 COG1110 Reverse gyrase [DNA re 72.1 23 0.0005 41.9 9.9 67 570-637 125-197 (1187)
373 PRK07399 DNA polymerase III su 72.0 21 0.00046 37.2 9.1 44 34-77 9-54 (314)
374 PRK11034 clpA ATP-dependent Cl 71.3 11 0.00025 44.1 7.6 24 49-72 207-230 (758)
375 cd01124 KaiC KaiC is a circadi 71.3 5.1 0.00011 38.0 4.1 48 52-118 2-49 (187)
376 COG1198 PriA Primosomal protei 71.3 13 0.00028 43.0 7.9 83 545-631 222-305 (730)
377 KOG0733 Nuclear AAA ATPase (VC 71.2 4.8 0.0001 44.6 4.1 48 48-118 544-592 (802)
378 TIGR00580 mfd transcription-re 71.1 22 0.00048 42.8 10.1 98 549-649 481-582 (926)
379 PRK11823 DNA repair protein Ra 70.9 8.9 0.00019 42.2 6.3 46 53-117 84-129 (446)
380 PRK12377 putative replication 70.8 8.7 0.00019 38.4 5.7 26 50-75 102-127 (248)
381 TIGR01547 phage_term_2 phage t 70.8 9.9 0.00021 41.2 6.7 38 244-283 102-142 (396)
382 PF07015 VirC1: VirC1 protein; 70.7 8.2 0.00018 37.8 5.3 21 58-78 11-31 (231)
383 COG0470 HolB ATPase involved i 70.5 30 0.00066 36.0 10.2 27 52-78 27-53 (325)
384 PRK10416 signal recognition pa 70.0 25 0.00055 36.6 9.2 23 53-75 118-140 (318)
385 KOG0311 Predicted E3 ubiquitin 69.8 0.9 1.9E-05 46.2 -1.5 49 465-514 42-91 (381)
386 PRK11773 uvrD DNA-dependent he 69.6 9.3 0.0002 45.0 6.5 70 29-120 9-79 (721)
387 PRK13833 conjugal transfer pro 69.4 7.9 0.00017 40.4 5.2 41 30-74 129-169 (323)
388 PHA03333 putative ATPase subun 69.1 69 0.0015 36.8 12.6 38 242-282 293-332 (752)
389 TIGR01075 uvrD DNA helicase II 68.8 12 0.00027 44.0 7.3 70 29-120 4-74 (715)
390 KOG4172 Predicted E3 ubiquitin 68.7 1.5 3.2E-05 31.4 -0.2 48 466-514 7-55 (62)
391 TIGR03346 chaperone_ClpB ATP-d 68.7 15 0.00032 44.2 8.0 40 34-73 178-218 (852)
392 PRK13709 conjugal transfer nic 68.3 28 0.0006 44.7 10.4 44 27-73 965-1008(1747)
393 PRK12727 flagellar biosynthesi 68.2 34 0.00074 38.1 9.9 23 52-74 353-375 (559)
394 PRK10919 ATP-dependent DNA hel 67.6 5.8 0.00013 46.2 4.3 70 29-120 2-72 (672)
395 TIGR00064 ftsY signal recognit 67.5 37 0.0008 34.5 9.6 24 52-75 75-98 (272)
396 KOG4265 Predicted E3 ubiquitin 67.1 4.1 8.9E-05 41.9 2.5 53 462-516 286-339 (349)
397 PRK14712 conjugal transfer nic 66.8 28 0.0006 44.2 9.8 45 25-72 831-875 (1623)
398 PRK08058 DNA polymerase III su 66.7 31 0.00066 36.3 9.1 44 33-76 10-55 (329)
399 KOG4739 Uncharacterized protei 66.7 2.9 6.3E-05 40.6 1.3 45 467-515 4-50 (233)
400 KOG2028 ATPase related to the 66.6 5 0.00011 41.5 2.9 26 47-72 160-185 (554)
401 PRK06450 threonine synthase; V 66.6 54 0.0012 34.5 10.9 76 547-628 75-150 (338)
402 PRK12724 flagellar biosynthesi 66.3 26 0.00056 37.8 8.4 56 243-299 299-362 (432)
403 COG1224 TIP49 DNA helicase TIP 66.2 5.7 0.00012 41.1 3.3 36 39-74 55-90 (450)
404 PRK14873 primosome assembly pr 66.0 32 0.00068 39.9 9.6 96 550-650 170-267 (665)
405 TIGR00708 cobA cob(I)alamin ad 65.6 2.1 4.6E-05 40.0 0.2 55 242-296 96-154 (173)
406 PRK08939 primosomal protein Dn 65.3 13 0.00028 38.5 5.9 26 50-75 157-182 (306)
407 KOG0953 Mitochondrial RNA heli 65.2 15 0.00032 40.3 6.2 74 55-154 197-270 (700)
408 PRK10689 transcription-repair 65.0 31 0.00067 42.7 9.8 95 549-646 630-728 (1147)
409 TIGR00416 sms DNA repair prote 65.0 27 0.00059 38.4 8.6 46 53-117 98-143 (454)
410 KOG1942 DNA helicase, TBP-inte 64.7 5.8 0.00013 39.7 3.0 32 42-73 57-88 (456)
411 PHA00350 putative assembly pro 64.7 13 0.00029 39.8 5.8 16 54-69 6-21 (399)
412 cd01129 PulE-GspE PulE/GspE Th 64.4 8.3 0.00018 39.1 4.2 43 29-74 63-105 (264)
413 COG3267 ExeA Type II secretory 64.1 14 0.00031 36.5 5.5 71 26-117 29-105 (269)
414 COG0593 DnaA ATPase involved i 64.0 68 0.0015 34.6 10.9 52 244-295 176-235 (408)
415 KOG1813 Predicted E3 ubiquitin 64.0 4.5 9.7E-05 40.3 2.0 52 460-513 235-286 (313)
416 KOG0741 AAA+-type ATPase [Post 63.9 11 0.00023 41.2 4.9 63 47-131 254-332 (744)
417 cd01125 repA Hexameric Replica 63.8 27 0.00059 34.7 7.8 61 52-119 4-67 (239)
418 PF14447 Prok-RING_4: Prokaryo 63.1 5.8 0.00012 28.9 1.9 46 466-515 7-52 (55)
419 KOG0989 Replication factor C, 63.0 8.5 0.00018 39.1 3.7 43 33-75 40-83 (346)
420 KOG0738 AAA+-type ATPase [Post 62.8 8.1 0.00018 40.5 3.7 48 48-118 244-292 (491)
421 COG1066 Sms Predicted ATP-depe 62.2 26 0.00056 37.3 7.2 47 53-119 97-143 (456)
422 COG2247 LytB Putative cell wal 62.1 35 0.00077 34.8 7.9 66 569-640 75-145 (337)
423 PF01443 Viral_helicase1: Vira 61.9 14 0.00031 36.4 5.3 41 243-286 62-102 (234)
424 PF06068 TIP49: TIP49 C-termin 61.6 6.6 0.00014 41.2 2.8 25 50-74 51-75 (398)
425 COG0552 FtsY Signal recognitio 61.5 18 0.00039 37.3 5.9 54 243-297 221-285 (340)
426 KOG4159 Predicted E3 ubiquitin 60.9 5 0.00011 42.7 1.9 49 464-514 82-130 (398)
427 PHA00012 I assembly protein 60.8 8.3 0.00018 39.7 3.3 24 53-76 5-28 (361)
428 COG5222 Uncharacterized conser 60.3 4.6 9.9E-05 39.9 1.3 46 465-511 273-319 (427)
429 TIGR02782 TrbB_P P-type conjug 60.2 13 0.00029 38.3 4.9 25 50-74 133-157 (299)
430 PRK14723 flhF flagellar biosyn 60.1 34 0.00073 40.0 8.4 22 52-73 188-209 (767)
431 PF13607 Succ_CoA_lig: Succiny 60.0 72 0.0016 28.6 8.9 84 572-676 3-88 (138)
432 PRK14721 flhF flagellar biosyn 59.7 38 0.00081 36.8 8.3 54 244-298 270-328 (420)
433 TIGR01074 rep ATP-dependent DN 59.7 11 0.00023 44.2 4.5 70 29-120 1-71 (664)
434 KOG2660 Locus-specific chromos 59.5 2.4 5.2E-05 42.9 -0.7 46 466-513 15-61 (331)
435 TIGR02533 type_II_gspE general 59.4 13 0.00029 41.2 5.0 42 28-73 224-266 (486)
436 PRK13894 conjugal transfer ATP 58.5 16 0.00035 38.0 5.2 49 242-296 218-266 (319)
437 PHA00673 acetyltransferase dom 58.4 20 0.00044 32.7 5.1 48 240-287 84-134 (154)
438 TIGR01425 SRP54_euk signal rec 57.9 31 0.00066 37.5 7.2 24 52-75 103-126 (429)
439 PF12846 AAA_10: AAA-like doma 57.5 10 0.00022 39.1 3.5 46 50-114 2-47 (304)
440 KOG1133 Helicase of the DEAD s 57.4 14 0.00031 41.5 4.6 95 554-652 614-721 (821)
441 KOG0339 ATP-dependent RNA heli 57.4 1.3E+02 0.0028 33.0 11.4 94 549-647 269-377 (731)
442 PRK10436 hypothetical protein; 57.4 13 0.00027 41.0 4.3 43 28-73 200-242 (462)
443 cd00046 DEXDc DEAD-like helica 57.4 62 0.0013 28.0 8.4 97 549-650 9-112 (144)
444 TIGR00365 monothiol glutaredox 57.4 69 0.0015 26.7 7.9 56 571-626 12-73 (97)
445 COG2804 PulE Type II secretory 57.0 11 0.00024 41.2 3.6 46 28-76 240-285 (500)
446 PF07726 AAA_3: ATPase family 56.8 4.6 0.0001 35.6 0.7 23 52-74 2-24 (131)
447 PRK06731 flhF flagellar biosyn 56.7 64 0.0014 32.7 9.0 54 243-297 154-212 (270)
448 TIGR02760 TraI_TIGR conjugativ 56.0 42 0.00092 44.1 9.2 41 28-71 1018-1058(1960)
449 cd00268 DEADc DEAD-box helicas 55.9 1E+02 0.0022 29.3 10.2 95 549-648 45-151 (203)
450 PRK13900 type IV secretion sys 55.7 19 0.00042 37.8 5.2 25 50-74 161-185 (332)
451 PRK06921 hypothetical protein; 55.5 17 0.00037 36.8 4.7 26 50-75 118-143 (266)
452 PRK13766 Hef nuclease; Provisi 55.2 1.9E+02 0.0042 34.4 14.2 114 549-669 38-161 (773)
453 PRK10824 glutaredoxin-4; Provi 54.4 71 0.0015 27.7 7.5 71 559-633 6-83 (115)
454 PRK09376 rho transcription ter 54.4 3.5 7.6E-05 43.7 -0.5 24 50-74 171-194 (416)
455 PF11789 zf-Nse: Zinc-finger o 54.3 6.5 0.00014 29.2 1.0 45 464-508 9-54 (57)
456 COG2255 RuvB Holliday junction 54.0 17 0.00037 36.6 4.1 39 33-72 36-74 (332)
457 TIGR02370 pyl_corrinoid methyl 53.6 2.1E+02 0.0046 27.4 11.9 100 553-674 63-170 (197)
458 COG1222 RPT1 ATP-dependent 26S 53.5 19 0.00042 37.5 4.5 44 29-72 154-208 (406)
459 PRK05973 replicative DNA helic 53.0 12 0.00025 37.2 2.9 23 53-75 68-90 (237)
460 PRK03992 proteasome-activating 52.4 17 0.00037 39.2 4.4 25 48-72 164-188 (389)
461 KOG0731 AAA+-type ATPase conta 52.0 9.5 0.00021 44.0 2.3 26 47-72 342-367 (774)
462 PF05496 RuvB_N: Holliday junc 51.9 16 0.00035 35.7 3.5 25 48-72 49-73 (233)
463 PTZ00454 26S protease regulato 51.5 17 0.00037 39.2 4.1 25 48-72 178-202 (398)
464 TIGR02538 type_IV_pilB type IV 51.4 19 0.00041 41.0 4.6 44 27-73 297-340 (564)
465 PF06745 KaiC: KaiC; InterPro 50.6 14 0.00031 36.3 3.2 48 52-118 22-70 (226)
466 KOG0737 AAA+-type ATPase [Post 50.4 14 0.0003 38.6 3.0 49 48-119 126-175 (386)
467 PRK11331 5-methylcytosine-spec 50.4 19 0.00041 39.2 4.1 34 39-73 185-218 (459)
468 KOG2543 Origin recognition com 50.0 18 0.00039 38.0 3.7 46 28-73 8-54 (438)
469 COG0553 HepA Superfamily II DN 49.6 3.5 7.7E-05 49.8 -1.7 93 553-669 432-524 (866)
470 PF00270 DEAD: DEAD/DEAH box h 49.4 96 0.0021 28.3 8.5 93 549-646 23-125 (169)
471 COG0378 HypB Ni2+-binding GTPa 49.3 49 0.0011 31.5 6.2 100 51-152 15-128 (202)
472 cd01524 RHOD_Pyr_redox Member 49.1 27 0.00059 28.3 4.2 38 568-605 49-86 (90)
473 PRK06995 flhF flagellar biosyn 48.9 66 0.0014 35.6 8.1 21 53-73 260-280 (484)
474 PF13173 AAA_14: AAA domain 48.3 16 0.00035 32.2 2.8 35 244-282 62-99 (128)
475 PRK07414 cob(I)yrinic acid a,c 47.9 15 0.00032 34.5 2.5 51 242-295 114-168 (178)
476 KOG0701 dsRNA-specific nucleas 47.6 10 0.00022 47.4 1.8 95 572-668 294-400 (1606)
477 TIGR01242 26Sp45 26S proteasom 47.5 21 0.00046 38.1 4.1 25 49-73 156-180 (364)
478 cd01131 PilT Pilus retraction 47.5 17 0.00037 34.9 3.1 23 52-74 4-26 (198)
479 PRK13531 regulatory ATPase Rav 47.5 19 0.00042 39.5 3.7 37 36-73 27-63 (498)
480 COG0541 Ffh Signal recognition 47.2 25 0.00055 37.6 4.4 24 52-75 103-126 (451)
481 KOG0730 AAA+-type ATPase [Post 47.1 21 0.00046 40.1 4.0 49 47-118 466-515 (693)
482 PF05970 PIF1: PIF1-like helic 46.8 33 0.00072 36.6 5.4 61 30-109 2-63 (364)
483 KOG0298 DEAD box-containing he 46.6 12 0.00025 45.2 2.0 192 466-700 1153-1345(1394)
484 PF00158 Sigma54_activat: Sigm 46.5 78 0.0017 29.5 7.2 51 43-112 16-66 (168)
485 PRK05564 DNA polymerase III su 46.5 82 0.0018 32.7 8.2 26 50-75 26-52 (313)
486 COG2812 DnaX DNA polymerase II 46.5 54 0.0012 36.5 7.0 51 243-296 119-173 (515)
487 TIGR00347 bioD dethiobiotin sy 46.0 17 0.00037 33.7 2.7 25 53-77 2-26 (166)
488 COG1223 Predicted ATPase (AAA+ 45.8 27 0.00058 34.7 4.0 24 49-72 151-174 (368)
489 PF00437 T2SE: Type II/IV secr 45.6 15 0.00033 37.2 2.6 26 50-75 128-153 (270)
490 cd03028 GRX_PICOT_like Glutare 45.6 91 0.002 25.4 6.7 55 571-626 8-69 (90)
491 KOG0727 26S proteasome regulat 44.9 50 0.0011 32.6 5.6 57 16-72 143-212 (408)
492 TIGR01073 pcrA ATP-dependent D 44.7 28 0.00061 41.1 4.9 69 29-119 4-73 (726)
493 cd01518 RHOD_YceA Member of th 44.6 50 0.0011 27.5 5.2 38 568-605 59-97 (101)
494 TIGR01281 DPOR_bchL light-inde 44.6 14 0.00031 37.4 2.1 20 57-76 8-27 (268)
495 PRK08903 DnaA regulatory inact 44.6 40 0.00088 33.1 5.3 24 50-73 43-66 (227)
496 PF03237 Terminase_6: Terminas 44.6 68 0.0015 33.9 7.6 17 242-258 96-112 (384)
497 PRK15483 type III restriction- 44.5 50 0.0011 39.7 6.6 185 31-297 8-263 (986)
498 KOG0726 26S proteasome regulat 44.1 15 0.00032 37.0 2.0 26 47-72 217-242 (440)
499 cd01130 VirB11-like_ATPase Typ 43.9 33 0.00072 32.5 4.4 40 30-73 10-49 (186)
500 TIGR03880 KaiC_arch_3 KaiC dom 43.8 30 0.00066 33.9 4.3 47 53-118 20-66 (224)
No 1
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=1.3e-97 Score=744.02 Aligned_cols=624 Identities=57% Similarity=0.962 Sum_probs=574.9
Q ss_pred CCccccccccccCCCCCCCCccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCC
Q 004925 7 VDLDQQNAFMTETAEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDAS 86 (723)
Q Consensus 7 ~~~~~~~~~~~~~~~~p~~~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~ 86 (723)
+|++..++..++..++|.++..+|.|||++++.|+..++.+.++||||||+||+|||+++|++++....
T Consensus 162 ~dlde~~p~i~e~aeqP~dlii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~----------- 230 (791)
T KOG1002|consen 162 TDLDEANPVIAERAEQPDDLIIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVD----------- 230 (791)
T ss_pred hhhhhcCchhhhcccCcccceecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccc-----------
Confidence 488999999999999999999999999999999999999999999999999999999999999987322
Q ss_pred CCCCCCCCCCCceEEEechhhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccccCCCCEEEechhhhHHhhhhccCCCc
Q 004925 87 SSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPK 166 (723)
Q Consensus 87 ~~~~~~~~~~~~~LIv~P~~l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ivi~t~~~l~~~~~~~~~~~~ 166 (723)
..|+|||||...+.||.+||..++. +..++++|+|.+.....+.+..||+|+|||..+.+.+++...
T Consensus 231 ---------ra~tLVvaP~VAlmQW~nEI~~~T~-gslkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~--- 297 (791)
T KOG1002|consen 231 ---------RAPTLVVAPTVALMQWKNEIERHTS-GSLKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDY--- 297 (791)
T ss_pred ---------cCCeeEEccHHHHHHHHHHHHHhcc-CceEEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccc---
Confidence 2689999999999999999999998 699999999999999999999999999999999999875210
Q ss_pred ccccccCccchhhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEE
Q 004925 167 QKCQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWER 246 (723)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 246 (723)
+. .++ -......+.|+.+.|-+
T Consensus 298 -----------------------------------------------Gf-----rrK------ngv~ke~SlLHsi~~~R 319 (791)
T KOG1002|consen 298 -----------------------------------------------GF-----RRK------NGVDKEKSLLHSIKFYR 319 (791)
T ss_pred -----------------------------------------------cc-----ccc------CCcccccchhhhceeee
Confidence 00 000 01223356799999999
Q ss_pred EEeeccccccCCCcHHHHHHHhhhcCceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCcccccCCC---CCCCCC
Q 004925 247 IILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYS---SAECPN 323 (723)
Q Consensus 247 vIiDEaH~~kn~~s~~~~~l~~l~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 323 (723)
||+||||.+|+..|.+.+++..+.+.+||.|||||++|+++++|+++++|+..||.+++|..+++...++. ...|+.
T Consensus 320 iIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~ 399 (791)
T KOG1002|consen 320 IILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDH 399 (791)
T ss_pred eehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998776 467889
Q ss_pred CCCCCccchhhhhhhccccccccCCCcchhHHHHHHHHHHhHhHhhhhccCCcccccCCCCceEEEEEecCCHHHHHHHH
Q 004925 324 CPHNSVRHFCWWNRYVATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYE 403 (723)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~~~lp~~~~~~~~~~l~~~~~~~y~ 403 (723)
|++..+.|+.+|+.++.++++..+....+.++.. ..+.++..+|+||++-+...++.|||+++.+-..-++.++.++|+
T Consensus 400 c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~-~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~Ye 478 (791)
T KOG1002|consen 400 CSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFN-NIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYE 478 (791)
T ss_pred ccchhhhhhhhhcccccccchhhcccCchHHHHH-HHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHH
Confidence 9999999999999999999999988888877776 558999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhccCcccccccccccccCCCccccccccccccccccCCCCCcccc
Q 004925 404 SLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTN 483 (723)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (723)
.++......++.+.+.+...++++++|.+++++||+++||+++..+....... ......+|..|.+..+++...+
T Consensus 479 SLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~-----enk~~~~C~lc~d~aed~i~s~ 553 (791)
T KOG1002|consen 479 SLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPD-----ENKGEVECGLCHDPAEDYIESS 553 (791)
T ss_pred HHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCc-----cccCceeecccCChhhhhHhhh
Confidence 99999999999999999999999999999999999999999998875544433 3345678999999999999999
Q ss_pred cCCccchhhhhhhhcCc---CCCCCCCCCCCcccccccccCCCCCCccccccCCccccchhhccccccCcchHHHHHHHH
Q 004925 484 CGHAFCKACLFDSSASK---FVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREE 560 (723)
Q Consensus 484 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~ 560 (723)
|.|.||.-|+.+..... .+..||.|...+.+++... ...+..+.++..++|+..++++.+..|+|+++|++.
T Consensus 554 ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~-----alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EE 628 (791)
T KOG1002|consen 554 CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEP-----ALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEE 628 (791)
T ss_pred hhHHHHHHHHHHHHHhhhcccCCCCccccccccccccch-----hhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHH
Confidence 99999999998776554 5699999999999984443 344567889999999999999999999999999999
Q ss_pred HHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccc
Q 004925 561 IRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTV 640 (723)
Q Consensus 561 l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~ 640 (723)
|..+.++...-|.|||+||...++.|...|.+.|+.++.+.|+|++..|...|+.|.++.+|+|+|+|.++||+.+||..
T Consensus 629 l~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLte 708 (791)
T KOG1002|consen 629 LYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTE 708 (791)
T ss_pred HHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeech
Confidence 99999888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHhhcccCCCccccCCCCHHHHHhh
Q 004925 641 ASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFL 720 (723)
Q Consensus 641 a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~l 720 (723)
|++|+++||.|||...-|+..||+|+||.++|.|++|..++|+|+++...+.+|.+++++.+|++....+.++++||.||
T Consensus 709 ASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~Ai~kLt~eDmqfL 788 (791)
T KOG1002|consen 709 ASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEEAISKLTEEDMQFL 788 (791)
T ss_pred hceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC
Q 004925 721 FVT 723 (723)
Q Consensus 721 ~~~ 723 (723)
|.+
T Consensus 789 F~n 791 (791)
T KOG1002|consen 789 FNN 791 (791)
T ss_pred hcC
Confidence 974
No 2
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=3.8e-76 Score=622.42 Aligned_cols=480 Identities=27% Similarity=0.440 Sum_probs=412.4
Q ss_pred CCCCCCCccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCce
Q 004925 20 AEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKAT 99 (723)
Q Consensus 20 ~~~p~~~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (723)
...|..+...|+|||++||.||+...... .||||+||||||||++.|++++.++..... .+|+
T Consensus 196 ~~vPg~I~~~Lf~yQreGV~WL~~L~~q~-~GGILgDeMGLGKTIQiisFLaaL~~S~k~----------------~~pa 258 (923)
T KOG0387|consen 196 FKVPGFIWSKLFPYQREGVQWLWELYCQR-AGGILGDEMGLGKTIQIISFLAALHHSGKL----------------TKPA 258 (923)
T ss_pred ccccHHHHHHhhHHHHHHHHHHHHHHhcc-CCCeecccccCccchhHHHHHHHHhhcccc----------------cCce
Confidence 34577788899999999999999999888 899999999999999999999998876432 2899
Q ss_pred EEEechhhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC---------------ccccCCCCEEEechhhhHHhhhhccCC
Q 004925 100 LVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERS---------------AKQFSEFDFVITTYSIIEADYRKHVMP 164 (723)
Q Consensus 100 LIv~P~~l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~---------------~~~~~~~~ivi~t~~~l~~~~~~~~~~ 164 (723)
|||||..|+.||.+|+..|+| .+++.++|++....+ .....+..|+||||+.++..
T Consensus 259 LIVCP~Tii~qW~~E~~~w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~------- 329 (923)
T KOG0387|consen 259 LIVCPATIIHQWMKEFQTWWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ------- 329 (923)
T ss_pred EEEccHHHHHHHHHHHHHhCc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc-------
Confidence 999999999999999999999 799999998765311 12234566999999998765
Q ss_pred CcccccccCccchhhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceee
Q 004925 165 PKQKCQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKW 244 (723)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 244 (723)
...+..+.|
T Consensus 330 -----------------------------------------------------------------------~d~l~~~~W 338 (923)
T KOG0387|consen 330 -----------------------------------------------------------------------GDDLLGILW 338 (923)
T ss_pred -----------------------------------------------------------------------Ccccccccc
Confidence 345788899
Q ss_pred EEEEeeccccccCCCcHHHHHHHhhhcCceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCcccccCCCCCCCCCC
Q 004925 245 ERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNC 324 (723)
Q Consensus 245 ~~vIiDEaH~~kn~~s~~~~~l~~l~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (723)
+++|+||+|++||++|+.+.+++++++.+|++|||||++|++.+||+++.|+.|
T Consensus 339 ~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~P-------------------------- 392 (923)
T KOG0387|consen 339 DYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFP-------------------------- 392 (923)
T ss_pred cEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccC--------------------------
Confidence 999999999999999999999999999999999999999999999999999984
Q ss_pred CCCCccchhhhhhhccccccccCCCcchhHHH------HHHHHHHhHhHhhhhccCCcccccCCCCceEEEEEecCCHHH
Q 004925 325 PHNSVRHFCWWNRYVATPIQTHGNSYGGRRAM------ILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIRE 398 (723)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~~~rr~~~~~~~~~~lp~~~~~~~~~~l~~~~ 398 (723)
+.++....|...+..|+..|++..+..+.+ ...|+.++.++++||.+.++.. +.||.+.+.++.|.||+.|
T Consensus 393 --G~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~-~~Lp~K~E~VlfC~LT~~Q 469 (923)
T KOG0387|consen 393 --GKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKG-LKLPKKEEIVLFCRLTKLQ 469 (923)
T ss_pred --CcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh-ccCCCccceEEEEeccHHH
Confidence 445566789999999999999988876554 3467899999999999999987 5699999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhccCcccccccccccccCCCccccccccccccccccCCCC
Q 004925 399 ADYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADD 478 (723)
Q Consensus 399 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (723)
+.+|+.+....... ...+...+.+..+.-+|++|+||.+....+....
T Consensus 470 R~~Y~~fl~s~~v~--------~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~~------------------------ 517 (923)
T KOG0387|consen 470 RRLYQRFLNSSEVN--------KILNGKRNCLSGIDILRKICNHPDLLDRRDEDEK------------------------ 517 (923)
T ss_pred HHHHHHHhhhHHHH--------HHHcCCccceechHHHHhhcCCcccccCcccccc------------------------
Confidence 99999888653322 1222233456778899999999988753321000
Q ss_pred CcccccCCccchhhhhhhhcCcCCCCCCCCCCCcccccccccCCCCCCccccccCCccccchhhccc-cccCcchHHHHH
Q 004925 479 PVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQL-DEFQSSTKIEAL 557 (723)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~Kl~~l 557 (723)
...+. ..+..|.|+..+
T Consensus 518 --------------------------------------------------------------~~~D~~g~~k~sGKm~vl 535 (923)
T KOG0387|consen 518 --------------------------------------------------------------QGPDYEGDPKRSGKMKVL 535 (923)
T ss_pred --------------------------------------------------------------cCCCcCCChhhcchHHHH
Confidence 00000 334678999999
Q ss_pred HHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHH-hCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccc
Q 004925 558 REEIRFMVERDGSAKGIVFSQFTSFLDLINYSLH-KSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVAL 636 (723)
Q Consensus 558 ~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~-~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGl 636 (723)
..++..|. ..+.|+++|++.+.++++|+..|. ..|+.++.++|.++...|+.+|++|+++....|+|++|++||-|+
T Consensus 536 ~~ll~~W~--kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGl 613 (923)
T KOG0387|consen 536 AKLLKDWK--KQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGL 613 (923)
T ss_pred HHHHHHHh--hCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEeccccccc
Confidence 99999995 466799999999999999999999 689999999999999999999999999999999999999999999
Q ss_pred cccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHhhcccCCCccccCCCCHHH
Q 004925 637 NLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEAD 716 (723)
Q Consensus 637 nL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~~~~~~~~~~~~~~~~~~~~ 716 (723)
||++||+||+|||.|||+...||.-|+||+||++.|.||+|++.+|+||.+|.++.-|..+.+.++-+ +.+.......+
T Consensus 614 NLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~-p~q~RfF~~~d 692 (923)
T KOG0387|consen 614 NLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKN-PEQRRFFKGND 692 (923)
T ss_pred ccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcC-HHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999976 55555666667
Q ss_pred HHhhhc
Q 004925 717 MRFLFV 722 (723)
Q Consensus 717 ~~~l~~ 722 (723)
+..||.
T Consensus 693 l~dLFs 698 (923)
T KOG0387|consen 693 LHDLFS 698 (923)
T ss_pred HHHHhC
Confidence 777774
No 3
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=2.5e-76 Score=620.19 Aligned_cols=458 Identities=33% Similarity=0.525 Sum_probs=394.3
Q ss_pred CCCCCc-cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceE
Q 004925 22 DPPDLI-TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATL 100 (723)
Q Consensus 22 ~p~~~~-~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 100 (723)
.|..++ ..|+|||++|+.|++..+.++ -+|||||+||+|||+++|+++.++...... .||.|
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~eng-ingILaDEMGLGKTlQtIs~l~yl~~~~~~----------------~GPfL 221 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENG-INGILADEMGLGKTLQTISLLGYLKGRKGI----------------PGPFL 221 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcC-cccEeehhcccchHHHHHHHHHHHHHhcCC----------------CCCeE
Confidence 577787 799999999999999999999 579999999999999999999988764442 28999
Q ss_pred EEechhhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc-----ccCCCCEEEechhhhHHhhhhccCCCcccccccCcc
Q 004925 101 VICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAK-----QFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKS 175 (723)
Q Consensus 101 Iv~P~~l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~ 175 (723)
|+||++.+.+|..||.+|+| .+.+++|+|++..+..- .-..++|+||||+++-++-
T Consensus 222 Vi~P~StL~NW~~Ef~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk----------------- 282 (971)
T KOG0385|consen 222 VIAPKSTLDNWMNEFKRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK----------------- 282 (971)
T ss_pred EEeeHhhHHHHHHHHHHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH-----------------
Confidence 99999999999999999999 89999999998665321 1247899999999987662
Q ss_pred chhhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccccc
Q 004925 176 FYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFI 255 (723)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~ 255 (723)
..|..++|.++||||||++
T Consensus 283 -------------------------------------------------------------~~lk~~~W~ylvIDEaHRi 301 (971)
T KOG0385|consen 283 -------------------------------------------------------------SFLKKFNWRYLVIDEAHRI 301 (971)
T ss_pred -------------------------------------------------------------HHHhcCCceEEEechhhhh
Confidence 3477889999999999999
Q ss_pred cCCCcHHHHHHHhhhcCceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCcccccCCCCCCCCCCCCCCccchhhh
Q 004925 256 KDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWW 335 (723)
Q Consensus 256 kn~~s~~~~~l~~l~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (723)
||.+|.+++.++.+.+.+||++||||++|++.+||++++||-|+.|..- ..|..|
T Consensus 302 KN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~-------------------------e~F~sw 356 (971)
T KOG0385|consen 302 KNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSA-------------------------EDFDSW 356 (971)
T ss_pred cchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCH-------------------------HHHHHH
Confidence 9999999999999999999999999999999999999999998888542 122333
Q ss_pred hhhccccccccCCCcchhHHHHHHHHHHhHhHhhhhccCCcccccCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 004925 336 NRYVATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNT 415 (723)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~~~lp~~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~ 415 (723)
.... ...+.......++.++++|++||.+.+|... +||+.+..+++.|++.|++.|..+...-...++.
T Consensus 357 F~~~---------~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~s--LppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~ 425 (971)
T KOG0385|consen 357 FDFT---------NCEGDQELVSRLHKVLRPFLLRRIKSDVEKS--LPPKKELIIYVGMSSMQKKWYKAILMKDLDALNG 425 (971)
T ss_pred Hccc---------ccccCHHHHHHHHhhhhHHHHHHHHHhHhhc--CCCcceeeEeccchHHHHHHHHHHHHhcchhhcc
Confidence 2221 1122334777889999999999999999887 9999999999999999999999988776665543
Q ss_pred HHHhccccccHHHHHHHHHHHHhhccCcccccccccccccCCCccccccccccccccccCCCCCcccccCCccchhhhhh
Q 004925 416 YVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFD 495 (723)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (723)
.... ....+.+++++||+||+|||++...... .
T Consensus 426 ~~~~-----~k~kL~NI~mQLRKccnHPYLF~g~ePg-~----------------------------------------- 458 (971)
T KOG0385|consen 426 EGKG-----EKTKLQNIMMQLRKCCNHPYLFDGAEPG-P----------------------------------------- 458 (971)
T ss_pred cccc-----hhhHHHHHHHHHHHhcCCccccCCCCCC-C-----------------------------------------
Confidence 2221 2456889999999999999998652221 0
Q ss_pred hhcCcCCCCCCCCCCCcccccccccCCCCCCccccccCCccccchhhccccccCcchHHHHHHHHHHHHHhhcCCceEEE
Q 004925 496 SSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIV 575 (723)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvII 575 (723)
+...+...+..|+|+..|-++|..+ ...|.||+|
T Consensus 459 --------------------------------------------pyttdehLv~nSGKm~vLDkLL~~L--k~~GhRVLI 492 (971)
T KOG0385|consen 459 --------------------------------------------PYTTDEHLVTNSGKMLVLDKLLPKL--KEQGHRVLI 492 (971)
T ss_pred --------------------------------------------CCCcchHHHhcCcceehHHHHHHHH--HhCCCeEEE
Confidence 0011112235688999999999998 457899999
Q ss_pred EcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCC-CceEEEEecCCCcccccccccCEEEEECCCCChh
Q 004925 576 FSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDP-DCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPA 654 (723)
Q Consensus 576 F~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~-~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~ 654 (723)
|+|+..+++.|.+++.-.|+.+++++|+++.++|...|+.|+..+ ...|+++||++||.||||..|+.||+||..|||.
T Consensus 493 FSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ 572 (971)
T KOG0385|consen 493 FSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQ 572 (971)
T ss_pred eHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCch
Confidence 999999999999999999999999999999999999999999853 6899999999999999999999999999999999
Q ss_pred hHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHhhcccCCC
Q 004925 655 VEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGS 705 (723)
Q Consensus 655 ~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~~~~~~~~~ 705 (723)
..-||..|+||+||+++|.||+|++++||||.++.++..|.++-+-+++++
T Consensus 573 ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g 623 (971)
T KOG0385|consen 573 VDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQG 623 (971)
T ss_pred hhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccC
Confidence 999999999999999999999999999999999999999999999888766
No 4
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=1.3e-72 Score=644.43 Aligned_cols=473 Identities=29% Similarity=0.491 Sum_probs=389.8
Q ss_pred CCCCCCccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceE
Q 004925 21 EDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATL 100 (723)
Q Consensus 21 ~~p~~~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 100 (723)
.+|+.+...|+|||++|+.||+.....+ .||||||+||+|||+++|+++..+...... .+|+|
T Consensus 161 ~qP~~i~~~Lr~YQleGlnWLi~l~~~g-~gGILADEMGLGKTlQaIalL~~L~~~~~~----------------~gp~L 223 (1033)
T PLN03142 161 VQPSCIKGKMRDYQLAGLNWLIRLYENG-INGILADEMGLGKTLQTISLLGYLHEYRGI----------------TGPHM 223 (1033)
T ss_pred cCChHhccchHHHHHHHHHHHHHHHhcC-CCEEEEeCCCccHHHHHHHHHHHHHHhcCC----------------CCCEE
Confidence 4688888899999999999999888777 789999999999999999999876543322 27999
Q ss_pred EEechhhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc-----cccCCCCEEEechhhhHHhhhhccCCCcccccccCcc
Q 004925 101 VICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSA-----KQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKS 175 (723)
Q Consensus 101 Iv~P~~l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~ 175 (723)
||||++++.||..||.+|+| .+.++.++|....+.. .....++|+|+||+++.....
T Consensus 224 IVvP~SlL~nW~~Ei~kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~---------------- 285 (1033)
T PLN03142 224 VVAPKSTLGNWMNEIRRFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT---------------- 285 (1033)
T ss_pred EEeChHHHHHHHHHHHHHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH----------------
Confidence 99999999999999999998 7889999997644321 113568999999999876532
Q ss_pred chhhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccccc
Q 004925 176 FYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFI 255 (723)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~ 255 (723)
.+..+.|++|||||||++
T Consensus 286 --------------------------------------------------------------~L~k~~W~~VIvDEAHrI 303 (1033)
T PLN03142 286 --------------------------------------------------------------ALKRFSWRYIIIDEAHRI 303 (1033)
T ss_pred --------------------------------------------------------------HhccCCCCEEEEcCcccc
Confidence 356678999999999999
Q ss_pred cCCCcHHHHHHHhhhcCceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCcccccCCCCCCCCCCCCCCccchhhh
Q 004925 256 KDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWW 335 (723)
Q Consensus 256 kn~~s~~~~~l~~l~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (723)
||..|+++++++.+.+++||+|||||++|++.|+|+++++|.|+.|+.. ..|
T Consensus 304 KN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~----------------------------~~F 355 (1033)
T PLN03142 304 KNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSA----------------------------ETF 355 (1033)
T ss_pred CCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCH----------------------------HHH
Confidence 9999999999999999999999999999999999999999998776532 234
Q ss_pred hhhccccccccCCCcchhHHHHHHHHHHhHhHhhhhccCCcccccCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 004925 336 NRYVATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNT 415 (723)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~~~lp~~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~ 415 (723)
...+... ...........++.+++++++||++.++... +|++.+..+.+.|++.|+.+|+.+.......+..
T Consensus 356 ~~~f~~~------~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~--LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~ 427 (1033)
T PLN03142 356 DEWFQIS------GENDQQEVVQQLHKVLRPFLLRRLKSDVEKG--LPPKKETILKVGMSQMQKQYYKALLQKDLDVVNA 427 (1033)
T ss_pred HHHHccc------cccchHHHHHHHHHHhhHHHhhhhHHHHhhh--CCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhc
Confidence 4333321 1112334456678999999999999998766 9999999999999999999999988765544322
Q ss_pred HHHhccccccHHHHHHHHHHHHhhccCcccccccccccccCCCccccccccccccccccCCCCCcccccCCccchhhhhh
Q 004925 416 YVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFD 495 (723)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (723)
......++..++++|++|+||+++........ . .
T Consensus 428 -------g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~-------------------------~-~------------- 461 (1033)
T PLN03142 428 -------GGERKRLLNIAMQLRKCCNHPYLFQGAEPGPP-------------------------Y-T------------- 461 (1033)
T ss_pred -------cccHHHHHHHHHHHHHHhCCHHhhhcccccCc-------------------------c-c-------------
Confidence 12334678899999999999998642211000 0 0
Q ss_pred hhcCcCCCCCCCCCCCcccccccccCCCCCCccccccCCccccchhhccccccCcchHHHHHHHHHHHHHhhcCCceEEE
Q 004925 496 SSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIV 575 (723)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvII 575 (723)
........|+|+..|.++|..+. ..+.||||
T Consensus 462 -----------------------------------------------~~e~lie~SgKl~lLdkLL~~Lk--~~g~KVLI 492 (1033)
T PLN03142 462 -----------------------------------------------TGEHLVENSGKMVLLDKLLPKLK--ERDSRVLI 492 (1033)
T ss_pred -----------------------------------------------chhHHhhhhhHHHHHHHHHHHHH--hcCCeEEe
Confidence 00011245889999999999884 46789999
Q ss_pred EcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCC-CCceEEEEecCCCcccccccccCEEEEECCCCChh
Q 004925 576 FSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTED-PDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPA 654 (723)
Q Consensus 576 F~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~-~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~ 654 (723)
||+|..+++.|.++|...|++++.|+|+++..+|+.++++|+++ +...|+|+|+++||+||||+.|++||+||++|||.
T Consensus 493 FSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~ 572 (1033)
T PLN03142 493 FSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQ 572 (1033)
T ss_pred ehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChH
Confidence 99999999999999999999999999999999999999999874 35678999999999999999999999999999999
Q ss_pred hHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHhhcccCCC-ccccCCCCHHHHHhhh
Q 004925 655 VEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGS-ADAFGKLTEADMRFLF 721 (723)
Q Consensus 655 ~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~~~~~~~~~-~~~~~~~~~~~~~~l~ 721 (723)
...||+||+||+||+++|+||+|+++||+||.|+.++..|..+...++++. ...-..++.++|..||
T Consensus 573 ~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~~Vi~~g~~~~~~~~~~~eL~~ll 640 (1033)
T PLN03142 573 VDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMV 640 (1033)
T ss_pred HHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHhcCcccccccCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999988888643 2222456677776665
No 5
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=6e-70 Score=566.84 Aligned_cols=540 Identities=33% Similarity=0.523 Sum_probs=423.2
Q ss_pred CCCCCCCccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCce
Q 004925 20 AEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKAT 99 (723)
Q Consensus 20 ~~~p~~~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (723)
.+.|.++...|.|||..++.||+.++.....||||||+||+|||+++|++|...............+ ..+|
T Consensus 316 te~P~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~---------a~~T 386 (901)
T KOG4439|consen 316 TETPDGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGES---------ASKT 386 (901)
T ss_pred cCCCCcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccc---------cCCe
Confidence 4668999999999999999999999998889999999999999999999998755433222111111 1359
Q ss_pred EEEechhhHHHHHHHHHhhcCCCCcEEEEEeCCC-CCCCccccCCCCEEEechhhhHHhhhhccCCCcccccccCccchh
Q 004925 100 LVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSN-RERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQ 178 (723)
Q Consensus 100 LIv~P~~l~~qW~~ei~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 178 (723)
|||||.+|+.||..|+.+-.....+.|++|||.+ +.-....+..||||||||+...+.-.
T Consensus 387 LII~PaSli~qW~~Ev~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~------------------- 447 (901)
T KOG4439|consen 387 LIICPASLIHQWEAEVARRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPD------------------- 447 (901)
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCc-------------------
Confidence 9999999999999999999988899999999988 66677789999999999998754100
Q ss_pred hhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccccccCC
Q 004925 179 KKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDR 258 (723)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~kn~ 258 (723)
.......+.+.+..+.|.+||+||||.+||+
T Consensus 448 -------------------------------------------------~e~~~~~~~spL~~I~W~RVILDEAH~IrN~ 478 (901)
T KOG4439|consen 448 -------------------------------------------------DELEEGKNSSPLARIAWSRVILDEAHNIRNS 478 (901)
T ss_pred -------------------------------------------------hhhhcccCccHHHHhhHHHhhhhhhhhhccc
Confidence 0001233456789999999999999999999
Q ss_pred CcHHHHHHHhhhcCceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCcccccCCCCCCCCCCCCCCccchhhhhhh
Q 004925 259 RSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRY 338 (723)
Q Consensus 259 ~s~~~~~l~~l~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (723)
.++-..++..|.+.+||.|||||++|+..|+|+++.||+..||++ +.+|.+.
T Consensus 479 ~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D----------------------------~~~Wke~ 530 (901)
T KOG4439|consen 479 NTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGD----------------------------LKQWKEN 530 (901)
T ss_pred chhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcch----------------------------HHHHHHh
Confidence 999999999999999999999999999999999999999999865 4677776
Q ss_pred ccccccccCCCcchhHHHHHHHHHHhHhHhhhhccCCcccc---cCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 004925 339 VATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAAD---LALPPRIVSLRRDSLDIREADYYESLYSESQAQFNT 415 (723)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~---~~lp~~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~ 415 (723)
+..+...+.+ ++.-+..++|+|||+..+... ..+|.+.+..+.++|+..+...|+.+.......++.
T Consensus 531 i~~~s~~g~~----------rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq 600 (901)
T KOG4439|consen 531 IDNMSKGGAN----------RLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQ 600 (901)
T ss_pred ccCccccchh----------hhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHH
Confidence 6554333332 556778899999998766552 358999999999999999999999988877777655
Q ss_pred HHHhc------------------------------------cccccHHHHHHHHHHHHhhccCcccccccccccccC---
Q 004925 416 YVQAG------------------------------------TVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRG--- 456 (723)
Q Consensus 416 ~~~~~------------------------------------~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~--- 456 (723)
+.... ........++-.|.+|||+|.||.+...........
T Consensus 601 ~L~~~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g 680 (901)
T KOG4439|consen 601 FLLQREDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNG 680 (901)
T ss_pred HHHhhhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcC
Confidence 33221 011123467899999999999996654432222111
Q ss_pred CCccccccccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcccccccccCCCCCCccccccCCcc
Q 004925 457 ETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKS 536 (723)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (723)
....+.+...... +....+........+| .......
T Consensus 681 ~~~sde~~~e~~~-----------------------l~el~k~~~T~~~~D~-------------------~ed~p~~-- 716 (901)
T KOG4439|consen 681 GDDSDEEQLEEDN-----------------------LAELEKNDETDCSDDN-------------------CEDLPTA-- 716 (901)
T ss_pred cchhhhhhhhhhH-----------------------HHhhhhcccccccccc-------------------ccccccc--
Confidence 1111111000000 0000000000000000 0000000
Q ss_pred ccchhhccccccCcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhh
Q 004925 537 SSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRF 616 (723)
Q Consensus 537 ~~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F 616 (723)
.........+.|.|+..+++.++..+ ...++|+||-+++..++..+...|++.|+.+..++|.....+|+.+++.|
T Consensus 717 ---~~~q~Fe~~r~S~Ki~~~l~~le~i~-~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~F 792 (901)
T KOG4439|consen 717 ---FPDQAFEPDRPSCKIAMVLEILETIL-TSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEF 792 (901)
T ss_pred ---chhhhcccccchhHHHHHHHHHHHHh-hcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHH
Confidence 11111334467999999999999984 67889999999999999999999999999999999999999999999999
Q ss_pred cCCC-CceEEEEecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHH
Q 004925 617 TEDP-DCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKK 695 (723)
Q Consensus 617 ~~~~-~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~ 695 (723)
+... +.+|+|++..+||.||||..|||+|++|.+|||..++||-.||+|+||+++|.||+|+++||+|+++...+..|.
T Consensus 793 N~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKl 872 (901)
T KOG4439|consen 793 NQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKL 872 (901)
T ss_pred HhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHH
Confidence 9754 499999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCcc-ccCCCCHHHHHhhhc
Q 004925 696 LVFEGTVGGSAD-AFGKLTEADMRFLFV 722 (723)
Q Consensus 696 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~ 722 (723)
.+...++.|+.- .+..++-.+++.||.
T Consensus 873 dlA~~VL~G~~tr~~~kLT~adlk~LFg 900 (901)
T KOG4439|consen 873 DLAKGVLTGSATRKMNKLTLADLKKLFG 900 (901)
T ss_pred HHHhhhccCccccccccccHHHHHHHhC
Confidence 999999988644 899999999999995
No 6
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=2e-69 Score=591.06 Aligned_cols=511 Identities=28% Similarity=0.453 Sum_probs=420.0
Q ss_pred cccccCCCCCCCCccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCC
Q 004925 14 AFMTETAEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGL 93 (723)
Q Consensus 14 ~~~~~~~~~p~~~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~ 93 (723)
+...++...|..++..||.||++|+.|+.-...-+ =+|||||+||+|||++++.+++.-+..+.. ....
T Consensus 960 pski~~y~Ip~pI~a~LRkYQqEGVnWLaFLnky~-LHGILcDDMGLGKTLQticilAsd~y~r~s----------~~~e 1028 (1549)
T KOG0392|consen 960 PSKIPEYKIPVPISAKLRKYQQEGVNWLAFLNKYK-LHGILCDDMGLGKTLQTICILASDHYKRRS----------ESSE 1028 (1549)
T ss_pred cccCCccccccchhHHHHHHHHhccHHHHHHHHhc-ccceeeccccccHHHHHHHHHHHHHHhhcc----------cchh
Confidence 45566677788899999999999999987655555 578999999999999999998865544311 1112
Q ss_pred CCCCceEEEechhhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC--ccccCCCCEEEechhhhHHhhhhccCCCcccccc
Q 004925 94 LGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERS--AKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQY 171 (723)
Q Consensus 94 ~~~~~~LIv~P~~l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~ 171 (723)
....|.|||||..|..+|+.|+.+|+| .+++..|.|....+. +....+++|+|++|+.+++++..
T Consensus 1029 ~~~~PSLIVCPsTLtGHW~~E~~kf~p--fL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~----------- 1095 (1549)
T KOG0392|consen 1029 FNRLPSLIVCPSTLTGHWKSEVKKFFP--FLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY----------- 1095 (1549)
T ss_pred hccCCeEEECCchhhhHHHHHHHHhcc--hhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH-----------
Confidence 233689999999999999999999999 699999999765543 45567899999999999999764
Q ss_pred cCccchhhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeec
Q 004925 172 CGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDE 251 (723)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDE 251 (723)
+.++.|.++|+||
T Consensus 1096 -------------------------------------------------------------------l~~~~wNYcVLDE 1108 (1549)
T KOG0392|consen 1096 -------------------------------------------------------------------LIKIDWNYCVLDE 1108 (1549)
T ss_pred -------------------------------------------------------------------HHhcccceEEecC
Confidence 7778899999999
Q ss_pred cccccCCCcHHHHHHHhhhcCceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCcccccCCCCCCCCCCCCCCccc
Q 004925 252 AHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRH 331 (723)
Q Consensus 252 aH~~kn~~s~~~~~l~~l~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (723)
+|-+||..++.+++++.+.+.+|++|||||++|++.|+|+++.||- +++++.
T Consensus 1109 GHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLM----------------------------PGfLGt 1160 (1549)
T KOG0392|consen 1109 GHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLM----------------------------PGFLGT 1160 (1549)
T ss_pred cceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhc----------------------------ccccCc
Confidence 9999999999999999999999999999999999999999999998 556666
Q ss_pred hhhhhhhccccccccCCCcchhHH------HHHHHHHHhHhHhhhhccCCcccccCCCCceEEEEEecCCHHHHHHHHHH
Q 004925 332 FCWWNRYVATPIQTHGNSYGGRRA------MILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESL 405 (723)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~l~~~~~rr~~~~~~~~~~lp~~~~~~~~~~l~~~~~~~y~~~ 405 (723)
-.+|...+.+|+....+.....+. +...+|+..=+|++||.|++|+.+ |||+.++-.+|+|++.|+++|+.+
T Consensus 1161 EKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~D--LPpKIIQDyyCeLs~lQ~kLY~df 1238 (1549)
T KOG0392|consen 1161 EKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKD--LPPKIIQDYYCELSPLQKKLYRDF 1238 (1549)
T ss_pred HHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh--CChhhhhheeeccCHHHHHHHHHH
Confidence 678999999988766664432221 244567778899999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccc--cHHHHHHHHHHHHhhccCcccccccccccccCCCccccccccccccccccCCCCCcccc
Q 004925 406 YSESQAQFNTYVQAGTVMN--NYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTN 483 (723)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (723)
..............+.... ...++|+++.-+|+.|+||.++............. .
T Consensus 1239 ~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~--------~--------------- 1295 (1549)
T KOG0392|consen 1239 VKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVS--------H--------------- 1295 (1549)
T ss_pred HHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHH--------H---------------
Confidence 8873333322222222222 26789999999999999999986542211100000 0
Q ss_pred cCCccchhhhhhhhcCcCCCCCCCCCCCcccccccccCCCCCCccccccCCccccchhhccccccCcchHHHHHHHHHHH
Q 004925 484 CGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRF 563 (723)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~ 563 (723)
| -.....+.+...+||+.+|.++|.+
T Consensus 1296 l------------------------------------------------------~~~~~~LHdi~hspKl~AL~qLL~e 1321 (1549)
T KOG0392|consen 1296 L------------------------------------------------------AHFNSSLHDIQHSPKLSALKQLLSE 1321 (1549)
T ss_pred H------------------------------------------------------HHhhhhHHHhhhchhHHHHHHHHHH
Confidence 0 0000012234669999999999998
Q ss_pred HHhh------------cCCceEEEEcccHhHHHHHHHHHHhC---CCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEe
Q 004925 564 MVER------------DGSAKGIVFSQFTSFLDLINYSLHKS---GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMS 628 (723)
Q Consensus 564 ~~~~------------~~~~KvIIF~~~~~~~~~l~~~L~~~---g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s 628 (723)
+.-. -.++|++||||+.++++.+.+-|.+. .+.+.+++|+.++.+|++++++||+|+.+.|+|++
T Consensus 1322 CGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLT 1401 (1549)
T KOG0392|consen 1322 CGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLT 1401 (1549)
T ss_pred hCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEe
Confidence 6321 03589999999999999999988776 55677999999999999999999999999999999
Q ss_pred cCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHhhcccCCCccc
Q 004925 629 LKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADA 708 (723)
Q Consensus 629 ~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~~~~~~~~~~~~ 708 (723)
|.+||.|+||++|+.|||++-.|||...-||+.|+||+||++.|.||+|+++||+||.+...+.=|.++.+.+++..-..
T Consensus 1402 ThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqNas 1481 (1549)
T KOG0392|consen 1402 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQNAS 1481 (1549)
T ss_pred eeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987777
Q ss_pred cCCCCHHHHHhhhc
Q 004925 709 FGKLTEADMRFLFV 722 (723)
Q Consensus 709 ~~~~~~~~~~~l~~ 722 (723)
+..++-.++-.||.
T Consensus 1482 l~tM~TdqLLdlF~ 1495 (1549)
T KOG0392|consen 1482 LETMDTDQLLDLFT 1495 (1549)
T ss_pred ccccCHHHHHHHhc
Confidence 77888888888874
No 7
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=5.8e-70 Score=574.57 Aligned_cols=515 Identities=29% Similarity=0.436 Sum_probs=394.1
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhhH
Q 004925 29 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAV 108 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~ 108 (723)
.|+|||+.|+.|+.-....++ +||||||||+|||.++|++++++.+.+.. +|.|||||.+.+
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l-~gILADEMGLGKTiQvIaFlayLkq~g~~-----------------gpHLVVvPsSTl 460 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKL-NGILADEMGLGKTIQVIAFLAYLKQIGNP-----------------GPHLVVVPSSTL 460 (941)
T ss_pred cccchhhhhHHHHHHHHHccc-cceehhhccCcchhHHHHHHHHHHHcCCC-----------------CCcEEEecchhH
Confidence 699999999999998888884 56999999999999999999999887653 899999999999
Q ss_pred HHHHHHHHhhcCCCCcEEEEEeCCCCCCCc------cccCCCCEEEechhhhHHhhhhccCCCcccccccCccchhhhhh
Q 004925 109 TQWVSEINRFTSVGSTKVLIYHGSNRERSA------KQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLV 182 (723)
Q Consensus 109 ~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~------~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (723)
++|..|+.+||| .++|..|+|+-.++.. ..-.+|+|++|||+.+...
T Consensus 461 eNWlrEf~kwCP--sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~------------------------- 513 (941)
T KOG0389|consen 461 ENWLREFAKWCP--SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASS------------------------- 513 (941)
T ss_pred HHHHHHHHHhCC--ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCC-------------------------
Confidence 999999999999 9999999998755432 1124799999999987532
Q ss_pred hhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccccccCCCcHH
Q 004925 183 VHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNT 262 (723)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~ 262 (723)
++....|...+|++||+||+|.+||.+|.+
T Consensus 514 --------------------------------------------------kdDRsflk~~~~n~viyDEgHmLKN~~SeR 543 (941)
T KOG0389|consen 514 --------------------------------------------------KDDRSFLKNQKFNYVIYDEGHMLKNRTSER 543 (941)
T ss_pred --------------------------------------------------hHHHHHHHhccccEEEecchhhhhccchHH
Confidence 122345788899999999999999999999
Q ss_pred HHHHHhhhcCceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCcccccCCCCCCCCCCCCCCccchhhhhhhcccc
Q 004925 263 AKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATP 342 (723)
Q Consensus 263 ~~~l~~l~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (723)
++.|..+++.+|++|||||++|++.||++++.|+-|+-|.... +.+...+...
T Consensus 544 y~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~---------------------------~dl~~if~~k 596 (941)
T KOG0389|consen 544 YKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSM---------------------------EDLDVIFKAK 596 (941)
T ss_pred HHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccc---------------------------hHHHHHHhcc
Confidence 9999999999999999999999999999999999988775431 2233333322
Q ss_pred ccccCCCcc--hhHHHHHHHHHHhHhHhhhhccCCcccccCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004925 343 IQTHGNSYG--GRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAG 420 (723)
Q Consensus 343 ~~~~~~~~~--~~~~~~~~l~~~l~~~~~rr~~~~~~~~~~lp~~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~ 420 (723)
-...++... -.+..+.+-..++.+|++||.+.+|+.. ||++..++.+|+|+..|+++|+.+..........
T Consensus 597 ~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~~--LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~----- 669 (941)
T KOG0389|consen 597 KTSDGDIENALLSQERISRAKTIMKPFILRRLKSQVLKQ--LPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNE----- 669 (941)
T ss_pred CCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCccceeEeeecchHHHHHHHHHHHHHhhhccc-----
Confidence 221111110 1122344557899999999999999988 9999999999999999999999988776322221
Q ss_pred cccccHHHH--HHHHHHHHhhccCcccccccccccccCCCccccccccccccccc--cCCCCCccccc--CCccchhhhh
Q 004925 421 TVMNNYAHI--FDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCN--DLADDPVVTNC--GHAFCKACLF 494 (723)
Q Consensus 421 ~~~~~~~~~--~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~ 494 (723)
...+ +.. -..++++|++++||.++..--........+.........|. |+ .+.++..+++. .|..|...-
T Consensus 670 -~~~n-s~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~-~n~qyIfEDm~~msDfelHqLc~~f~- 745 (941)
T KOG0389|consen 670 -VSKN-SELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKK-ANEQYIFEDMEVMSDFELHQLCCQFR- 745 (941)
T ss_pred -cccc-cccccchHHHHHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhh-cCHHHHHHHHHhhhHHHHHHHHHhcC-
Confidence 1111 111 45889999999999988643322222111111111111111 11 11111111111 011110000
Q ss_pred hhhcCcCCCCCCCCCCCcccccccccCCCCCCccccccCCccccchhhccccccCcchHHHHHHHHHHHHHhhcCCceEE
Q 004925 495 DSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGI 574 (723)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvI 574 (723)
|.. .-.+..+.+=.|+|+.+|-.+|..+. ..|+|||
T Consensus 746 -------------~~~-----------------------------~f~L~d~~~mdSgK~r~L~~LLp~~k--~~G~RVL 781 (941)
T KOG0389|consen 746 -------------HLS-----------------------------KFQLKDDLWMDSGKCRKLKELLPKIK--KKGDRVL 781 (941)
T ss_pred -------------CCc-----------------------------ccccCCchhhhhhhHhHHHHHHHHHh--hcCCEEE
Confidence 000 00112334456899999999999995 4668999
Q ss_pred EEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEECCCCChh
Q 004925 575 VFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPA 654 (723)
Q Consensus 575 IF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~ 654 (723)
||++|..+++.|+-+|.-.|+++.+++|++...+|+.+|+.|+.+.++.|+|+||++||.||||.+||+||++|..+||-
T Consensus 782 iFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~ 861 (941)
T KOG0389|consen 782 IFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPY 861 (941)
T ss_pred EeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHhhcccCCCccccCCCCHHHHHhhh
Q 004925 655 VEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLF 721 (723)
Q Consensus 655 ~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~l~ 721 (723)
...||..|+||+||+++|+||+|++++||||.|++.+..|..+-..+.++....-... +..+-.|+
T Consensus 862 dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k~~~~e~-~~~v~~lL 927 (941)
T KOG0389|consen 862 DDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGKGVEDEG-EKTVGKLL 927 (941)
T ss_pred ccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCccchhhhh-hhHHHHHH
Confidence 9999999999999999999999999999999999999999988877776644333332 33444443
No 8
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=2.3e-68 Score=585.96 Aligned_cols=471 Identities=28% Similarity=0.475 Sum_probs=396.8
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhh
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 107 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l 107 (723)
..||.||++|+.||+..+..+ .+|||||+||||||++.++++.++....... ||.|||||.+.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~-~n~ILADEmgLgktvqti~fl~~l~~~~~~~----------------gpflvvvplst 431 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKR-NNCILADEMGLGKTVQTITFLSYLFHSLQIH----------------GPFLVVVPLST 431 (1373)
T ss_pred chhhhhhcccchhHHHHHHhc-ccceehhhcCCCcchHHHHHHHHHHHhhhcc----------------CCeEEEeehhh
Confidence 599999999999999999988 9999999999999999999999887766543 79999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc-----------cccCCCCEEEechhhhHHhhhhccCCCcccccccCccc
Q 004925 108 VTQWVSEINRFTSVGSTKVLIYHGSNRERSA-----------KQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSF 176 (723)
Q Consensus 108 ~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~-----------~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~~ 176 (723)
+..|..|+..|+ .+++++|+|+...+.- ...-.++++||||+++-++
T Consensus 432 ~~~W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD------------------- 489 (1373)
T KOG0384|consen 432 ITAWEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD------------------- 489 (1373)
T ss_pred hHHHHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc-------------------
Confidence 999999999998 6999999997654421 1123578999999998766
Q ss_pred hhhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeecccccc
Q 004925 177 YQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIK 256 (723)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~k 256 (723)
...|..++|.+++|||||+++
T Consensus 490 -----------------------------------------------------------k~~L~~i~w~~~~vDeahrLk 510 (1373)
T KOG0384|consen 490 -----------------------------------------------------------KAELSKIPWRYLLVDEAHRLK 510 (1373)
T ss_pred -----------------------------------------------------------HhhhccCCcceeeecHHhhcC
Confidence 346888999999999999999
Q ss_pred CCCcHHHHHHHhhhcCceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCcccccCCCCCCCCCCCCCCccchhhhh
Q 004925 257 DRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWN 336 (723)
Q Consensus 257 n~~s~~~~~l~~l~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (723)
|..++.+..+..+...+|+++||||++|++.+||++++||.|..|.. +..|.
T Consensus 511 N~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~----------------------------~~~f~ 562 (1373)
T KOG0384|consen 511 NDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDS----------------------------WDEFL 562 (1373)
T ss_pred chHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCc----------------------------HHHHH
Confidence 99999999999999999999999999999999999999999887743 23333
Q ss_pred hhccccccccCCCcchhHHHHHHHHHHhHhHhhhhccCCcccccCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 004925 337 RYVATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTY 416 (723)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~~~lp~~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~ 416 (723)
... ......-.+-|+..|.++|+||.+++|... +|++.+.++.++||+.|+++|+.|..+....+..
T Consensus 563 ~~~----------~~~~e~~~~~L~~~L~P~~lRr~kkdveks--lp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtK- 629 (1373)
T KOG0384|consen 563 EEF----------DEETEEQVRKLQQILKPFLLRRLKKDVEKS--LPPKEETILRVELSDLQKQYYKAILTKNFSALTK- 629 (1373)
T ss_pred Hhh----------cchhHHHHHHHHHHhhHHHHHHHHhhhccC--CCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhc-
Confidence 322 112334455668999999999999999887 9999999999999999999999999988877643
Q ss_pred HHhccccccHHHHHHHHHHHHhhccCcccccccccccccCCCccccccccccccccccCCCCCcccccCCccchhhhhhh
Q 004925 417 VQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDS 496 (723)
Q Consensus 417 ~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (723)
+..... ..++++++.||+||+||||+......-......
T Consensus 630 ---G~~g~~-~~lLNimmELkKccNHpyLi~gaee~~~~~~~~------------------------------------- 668 (1373)
T KOG0384|consen 630 ---GAKGST-PSLLNIMMELKKCCNHPYLIKGAEEKILGDFRD------------------------------------- 668 (1373)
T ss_pred ---cCCCCC-chHHHHHHHHHHhcCCccccCcHHHHHHHhhhh-------------------------------------
Confidence 333333 678999999999999999985443221110000
Q ss_pred hcCcCCCCCCCCCCCcccccccccCCCCCCccccccCCccccchhhccccccCcchHHHHHHHHHHHHHhhcCCceEEEE
Q 004925 497 SASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVF 576 (723)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIF 576 (723)
.............|+||--|-++|-.+ ...|+|||||
T Consensus 669 -----------------------------------------~~~d~~L~~lI~sSGKlVLLDKLL~rL--k~~GHrVLIF 705 (1373)
T KOG0384|consen 669 -----------------------------------------KMRDEALQALIQSSGKLVLLDKLLPRL--KEGGHRVLIF 705 (1373)
T ss_pred -----------------------------------------cchHHHHHHHHHhcCcEEeHHHHHHHH--hcCCceEEEh
Confidence 000011112235688998888888888 5678999999
Q ss_pred cccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcC-CCCceEEEEecCCCcccccccccCEEEEECCCCChhh
Q 004925 577 SQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE-DPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAV 655 (723)
Q Consensus 577 ~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~-~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~ 655 (723)
+|+...++.|++||...++++-+++|+++.+-|++.|+.|++ +++-.|||++|++||-||||..|++||+||..|||..
T Consensus 706 SQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQN 785 (1373)
T KOG0384|consen 706 SQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQN 785 (1373)
T ss_pred HHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcch
Confidence 999999999999999999999999999999999999999997 5677899999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHhhcccC-----CCccccCCCCHHHHHhhh
Q 004925 656 EQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVG-----GSADAFGKLTEADMRFLF 721 (723)
Q Consensus 656 ~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~~~~~~~-----~~~~~~~~~~~~~~~~l~ 721 (723)
..||..|+||+||++.|.||+||+++|+||-|++++..|..+-++++. +........+.+++.+|+
T Consensus 786 DLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaIL 856 (1373)
T KOG0384|consen 786 DLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAIL 856 (1373)
T ss_pred HHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999888777764 334555667788888775
No 9
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=3.8e-64 Score=547.98 Aligned_cols=497 Identities=25% Similarity=0.334 Sum_probs=398.2
Q ss_pred CCCCccCChHHHHHHHHHHHHhccC-----CCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCC
Q 004925 23 PPDLITPLLRYQKEWLAWALKQEES-----AIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIK 97 (723)
Q Consensus 23 p~~~~~~L~p~Q~~~~~~~~~~~~~-----~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (723)
-|.+...|+|||++|+.||.+.... ...|||+||+||+|||++.|+++..+++..+...+ -..
T Consensus 232 dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~------------~~~ 299 (776)
T KOG0390|consen 232 DPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKP------------LIN 299 (776)
T ss_pred cccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccc------------ccc
Confidence 3556778999999999999986652 56899999999999999999999999887765332 347
Q ss_pred ceEEEechhhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc---------cccCCCCEEEechhhhHHhhhhccCCCccc
Q 004925 98 ATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSA---------KQFSEFDFVITTYSIIEADYRKHVMPPKQK 168 (723)
Q Consensus 98 ~~LIv~P~~l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~---------~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~ 168 (723)
+.|||||++|+.+|.+|+.+|..+..+....++|..+.... ...-.+-|.+.+|++++..+++
T Consensus 300 k~lVV~P~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~-------- 371 (776)
T KOG0390|consen 300 KPLVVAPSSLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK-------- 371 (776)
T ss_pred ccEEEccHHHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--------
Confidence 88999999999999999999998667888888887765100 0011245889999999877654
Q ss_pred ccccCccchhhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEE
Q 004925 169 CQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERII 248 (723)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vI 248 (723)
+....+++||
T Consensus 372 ----------------------------------------------------------------------il~~~~glLV 381 (776)
T KOG0390|consen 372 ----------------------------------------------------------------------ILLIRPGLLV 381 (776)
T ss_pred ----------------------------------------------------------------------HhcCCCCeEE
Confidence 5666899999
Q ss_pred eeccccccCCCcHHHHHHHhhhcCceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCcccccCCCCCCCCCCCCCC
Q 004925 249 LDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNS 328 (723)
Q Consensus 249 iDEaH~~kn~~s~~~~~l~~l~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (723)
+||+|+.||..+.++++|.++++++|++|||||++|++.|+++++.+.+ +++
T Consensus 382 cDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvr----------------------------P~~ 433 (776)
T KOG0390|consen 382 CDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVR----------------------------PGF 433 (776)
T ss_pred ECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcC----------------------------hhh
Confidence 9999999999999999999999999999999999999999999999999 566
Q ss_pred ccchhhhhhhccccccccCCCcchhH-----HHHHHHHHHhHhHhhhhccCCcccccCCCCceEEEEEecCCHHHHHHHH
Q 004925 329 VRHFCWWNRYVATPIQTHGNSYGGRR-----AMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYE 403 (723)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~l~~~~~rr~~~~~~~~~~lp~~~~~~~~~~l~~~~~~~y~ 403 (723)
+++...|.+.+..++..+.......+ +....|..+...|++||+....... ||++.+.++-+.+++.|..+|.
T Consensus 434 Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~--LP~k~e~vv~~n~t~~Q~~~~~ 511 (776)
T KOG0390|consen 434 LGSISSFKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLKY--LPGKYEYVVFCNPTPIQKELYK 511 (776)
T ss_pred ccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhhh--CCCceeEEEEeCCcHHHHHHHH
Confidence 67778888888888887666443322 2355678889999999999766666 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhccCcccccccccccccCCCccccccccccccccccCCCCCcccc
Q 004925 404 SLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTN 483 (723)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (723)
.+.... .. ..+ .. ..+..+..+++.|+||.++...+.......... +..+.
T Consensus 512 ~l~~~~-~~-~~~-~~--------~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~------------------~~~~~ 562 (776)
T KOG0390|consen 512 KLLDSM-KM-RTL-KG--------YALELITKLKKLCNHPSLLLLCEKTEKEKAFKN------------------PALLL 562 (776)
T ss_pred HHHHHH-Hh-hhh-hc--------chhhHHHHHHHHhcCHHhhcccccccccccccC------------------hHhhh
Confidence 988764 11 111 00 146778899999999999842221111000000 00000
Q ss_pred cCCccchhhhhhhhcCcCCCCCCCCCCCcccccccccCCCCCCccccccCCccccchhhccccccCcchHHHHHHHHHHH
Q 004925 484 CGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRF 563 (723)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~ 563 (723)
.......+......|.|+..|+.++..
T Consensus 563 -----------------------------------------------------~~~~~~~~~~~~~ks~kl~~L~~ll~~ 589 (776)
T KOG0390|consen 563 -----------------------------------------------------DPGKLKLDAGDGSKSGKLLVLVFLLEV 589 (776)
T ss_pred -----------------------------------------------------cccccccccccchhhhHHHHHHHHHHH
Confidence 000001111223347888888888854
Q ss_pred HHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCc-eEEEEecCCCcccccccccC
Q 004925 564 MVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDC-KIFLMSLKAGGVALNLTVAS 642 (723)
Q Consensus 564 ~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~-~vll~s~~~~~eGlnL~~a~ 642 (723)
.. .....++++.++|..+++.++..++-.|+.++.++|.|+..+|+.+++.||+.++. +|||+|+.+||+||||.+|+
T Consensus 590 ~~-ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAs 668 (776)
T KOG0390|consen 590 IR-EKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGAS 668 (776)
T ss_pred Hh-hhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccc
Confidence 43 34567888889999999999999999999999999999999999999999996665 99999999999999999999
Q ss_pred EEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHhhcccCCCccccCCCCHHHHHhhhc
Q 004925 643 HVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLFV 722 (723)
Q Consensus 643 ~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 722 (723)
++|+||++|||+..+||++||||.||+++|++|+|++.||+||.+|+++..|..+-+-+++.+...=...+.++++.||.
T Consensus 669 Rlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~~~~~~~~~~~~~~~lf~ 748 (776)
T KOG0390|consen 669 RLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEEEDVEKHFFTEDLKTLFD 748 (776)
T ss_pred eEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEecccccccccchHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999987655544555567777764
No 10
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=1.5e-64 Score=546.28 Aligned_cols=567 Identities=28% Similarity=0.433 Sum_probs=416.8
Q ss_pred CCCCCCccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceE
Q 004925 21 EDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATL 100 (723)
Q Consensus 21 ~~p~~~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 100 (723)
+.|.-+...||.||..|+.||...+... -+|||||+||+|||++.|++++++......+ ||.|
T Consensus 607 pvPsLLrGqLReYQkiGLdWLatLYekn-lNGILADEmGLGKTIQtISllAhLACeegnW----------------GPHL 669 (1958)
T KOG0391|consen 607 PVPSLLRGQLREYQKIGLDWLATLYEKN-LNGILADEMGLGKTIQTISLLAHLACEEGNW----------------GPHL 669 (1958)
T ss_pred CchHHHHHHHHHHHHhhHHHHHHHHHhc-ccceehhhhcccchhHHHHHHHHHHhcccCC----------------CCce
Confidence 3455667799999999999999999988 7999999999999999999999988877765 7899
Q ss_pred EEechhhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc-----cCCCCEEEechhhhHHhhhhccCCCcccccccCcc
Q 004925 101 VICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQ-----FSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKS 175 (723)
Q Consensus 101 Iv~P~~l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~ 175 (723)
||||.+++-+|.-|+++||| .++++.|+|+.+++..++ -+.+.|.||+|..+.++...
T Consensus 670 IVVpTsviLnWEMElKRwcP--glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A--------------- 732 (1958)
T KOG0391|consen 670 IVVPTSVILNWEMELKRWCP--GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA--------------- 732 (1958)
T ss_pred EEeechhhhhhhHHHhhhCC--cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH---------------
Confidence 99999999999999999999 899999999887764333 35577999999999887543
Q ss_pred chhhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccccc
Q 004925 176 FYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFI 255 (723)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~ 255 (723)
|...+|.++|+||||++
T Consensus 733 ---------------------------------------------------------------FkrkrWqyLvLDEaqnI 749 (1958)
T KOG0391|consen 733 ---------------------------------------------------------------FKRKRWQYLVLDEAQNI 749 (1958)
T ss_pred ---------------------------------------------------------------HHhhccceeehhhhhhh
Confidence 66678999999999999
Q ss_pred cCCCcHHHHHHHhhhcCceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCcccccCCCCCCCCCCCCCCccchhhh
Q 004925 256 KDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWW 335 (723)
Q Consensus 256 kn~~s~~~~~l~~l~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (723)
||..|++|+++..+++.+||+|||||++|++.|||+++.||-+..|..- +.|..|
T Consensus 750 KnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~sh-------------------------d~fk~w 804 (1958)
T KOG0391|consen 750 KNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASH-------------------------DIFKPW 804 (1958)
T ss_pred cchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhh-------------------------hhHHHH
Confidence 9999999999999999999999999999999999999999998776431 122222
Q ss_pred -hhhccccccccCCCcchhHHHHHHHHHHhHhHhhhhccCCcccccCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHH
Q 004925 336 -NRYVATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFN 414 (723)
Q Consensus 336 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~~~lp~~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~ 414 (723)
.+.....++.+-. -......+||+++++|++||.|.+|... +|.+.++++.|.|+..|+.+|+.+..+..
T Consensus 805 fsnPltgmiEgsqe---yn~klV~RLHkVlrPfiLRRlK~dVEKQ--lpkKyEHvv~CrLSkRQR~LYDDfmsq~~---- 875 (1958)
T KOG0391|consen 805 FSNPLTGMIEGSQE---YNHKLVIRLHKVLRPFILRRLKRDVEKQ--LPKKYEHVVKCRLSKRQRALYDDFMSQPG---- 875 (1958)
T ss_pred hcCcchhhcccchh---hchHHHHHHHHHhHHHHHHHHHHHHHHh--cchhhhhheeeehhhhHHHHHHHHhhccc----
Confidence 2222222222211 1134456779999999999999999888 99999999999999999999998876533
Q ss_pred HHHHhccccccHHHHHHHHHHHHhhccCcccccccccccccC------CCc----ccccc--------------------
Q 004925 415 TYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRG------ETE----ADAEH-------------------- 464 (723)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~------~~~----~~~~~-------------------- 464 (723)
.+..-..+++.++++.+++||++|+||-++....-.+..- ... +....
T Consensus 876 --TKetLkSGhfmsVlnilmqLrKvCNHPnLfEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~v 953 (1958)
T KOG0391|consen 876 --TKETLKSGHFMSVLNILMQLRKVCNHPNLFEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAV 953 (1958)
T ss_pred --hhhHhhcCchhHHHHHHHHHHHHcCCCCcCCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccc
Confidence 2223345677889999999999999999887422111000 000 00000
Q ss_pred --------------ccccccccccCCCCC--------------------------------------cccccCCccchhh
Q 004925 465 --------------VQQVCGLCNDLADDP--------------------------------------VVTNCGHAFCKAC 492 (723)
Q Consensus 465 --------------~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~ 492 (723)
.-...+......+.+ .+..-....|+..
T Consensus 954 p~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~ 1033 (1958)
T KOG0391|consen 954 PAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQS 1033 (1958)
T ss_pred cccchhhhhhcccccccccccccCCCCCCCccccccccccchhcccCCccccccccchhcccchheeeccccccccCcHh
Confidence 000000000000000 0001111223333
Q ss_pred hhhhhcCc----------------------CCCCCCCCCCCcc------cccccccCC----------------------
Q 004925 493 LFDSSASK----------------------FVAKCPTCSIPLT------VDFTANEGA---------------------- 522 (723)
Q Consensus 493 ~~~~~~~~----------------------~~~~~~~~~~~~~------~~~~~~~~~---------------------- 522 (723)
+.+....- -....|.-++... ..+......
T Consensus 1034 ~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat 1113 (1958)
T KOG0391|consen 1034 RVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTAT 1113 (1958)
T ss_pred HhhcCCCceeeeeecccCccccccceeeeccccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhh
Confidence 32222200 0000000000000 000000000
Q ss_pred -CCCCcccc------------------------------------------ccCCccc-----------------cchhh
Q 004925 523 -GNRTSKTT------------------------------------------IKGFKSS-----------------SILNR 542 (723)
Q Consensus 523 -~~~~~~~~------------------------------------------~~~~~~~-----------------~~~~~ 542 (723)
........ +..+.+. .+.+.
T Consensus 1114 ~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdr 1193 (1958)
T KOG0391|consen 1114 LAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDR 1193 (1958)
T ss_pred hccCCCccccccchhhHHHHHHHHHHHHHhhccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHH
Confidence 00000000 0000000 00000
Q ss_pred c--------------------------------------------------------ccc-ccCcchHHHHHHHHHHHHH
Q 004925 543 I--------------------------------------------------------QLD-EFQSSTKIEALREEIRFMV 565 (723)
Q Consensus 543 ~--------------------------------------------------------~~~-~~~~s~Kl~~l~~~l~~~~ 565 (723)
+ .+. ....++|+..|.=+|+++
T Consensus 1194 fafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQL- 1272 (1958)
T KOG0391|consen 1194 FAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQL- 1272 (1958)
T ss_pred heeecccccCCChhhcCCCCCcccchHHHHHHHHHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHH-
Confidence 0 000 123678999999888888
Q ss_pred hhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEE
Q 004925 566 ERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVF 645 (723)
Q Consensus 566 ~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI 645 (723)
+..++++|||+++..++++|+.+|..+|+-|..++|.++.++|+.+..+||.|..+.++|+||.+|+.||||..|+.||
T Consensus 1273 -k~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVv 1351 (1958)
T KOG0391|consen 1273 -KSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVV 1351 (1958)
T ss_pred -HhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEE
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHhhcccCCCccccCCCCHHHHHhhhc
Q 004925 646 LMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLFV 722 (723)
Q Consensus 646 ~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 722 (723)
|||..|||.-..|+-.|.+|+||+++|+||+|+.+.||||.|+.....|+++-+-+..|+.=........+++.||+
T Consensus 1352 FYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkkanqKr~L~evaiqggdfTt~ff~q~ti~dLFd 1428 (1958)
T KOG0391|consen 1352 FYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKANQKRMLDEVAIQGGDFTTAFFKQRTIRDLFD 1428 (1958)
T ss_pred EecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhhhHHHHHHHHhhccCCccHHHHhhhhHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999988777777777778888875
No 11
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=4.7e-64 Score=520.76 Aligned_cols=543 Identities=27% Similarity=0.417 Sum_probs=406.5
Q ss_pred ccCCCCCCCCccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCC
Q 004925 17 TETAEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGI 96 (723)
Q Consensus 17 ~~~~~~p~~~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (723)
..++++|.-+...|+.||+.|+.|+......+ =+|||||+||+|||+++|++++++.+....+
T Consensus 555 t~tV~qPkil~ctLKEYQlkGLnWLvnlYdqG-iNGILADeMGLGKTVQsisvlAhLaE~~nIw---------------- 617 (1185)
T KOG0388|consen 555 TRTVPQPKILKCTLKEYQLKGLNWLVNLYDQG-INGILADEMGLGKTVQSISVLAHLAETHNIW---------------- 617 (1185)
T ss_pred eeeccCchhhhhhhHHHhhccHHHHHHHHHcc-ccceehhhhccchhHHHHHHHHHHHHhccCC----------------
Confidence 55788899999999999999999999999999 6899999999999999999999988877654
Q ss_pred CceEEEechhhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc-----------cccCCCCEEEechhhhHHhhhhccCCC
Q 004925 97 KATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSA-----------KQFSEFDFVITTYSIIEADYRKHVMPP 165 (723)
Q Consensus 97 ~~~LIv~P~~l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~-----------~~~~~~~ivi~t~~~l~~~~~~~~~~~ 165 (723)
||+|||+|.+.+.+|.+||.+|+| .+++..|.|+.+.+.. .....++|+||+|+.+..+-.
T Consensus 618 GPFLVVtpaStL~NWaqEisrFlP--~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDek------ 689 (1185)
T KOG0388|consen 618 GPFLVVTPASTLHNWAQEISRFLP--SFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEK------ 689 (1185)
T ss_pred CceEEeehHHHHhHHHHHHHHhCc--cceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHH------
Confidence 799999999999999999999999 8999999998776532 123567899999999876633
Q ss_pred cccccccCccchhhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeE
Q 004925 166 KQKCQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWE 245 (723)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 245 (723)
+|....|.
T Consensus 690 ------------------------------------------------------------------------y~qkvKWQ 697 (1185)
T KOG0388|consen 690 ------------------------------------------------------------------------YLQKVKWQ 697 (1185)
T ss_pred ------------------------------------------------------------------------HHHhhhhh
Confidence 47788999
Q ss_pred EEEeeccccccCCCcHHHHHHHhhhcCceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCcccccCCCCCCCCCCC
Q 004925 246 RIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCP 325 (723)
Q Consensus 246 ~vIiDEaH~~kn~~s~~~~~l~~l~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (723)
++|+|||+-+|+..|.+++.|..++|+.|++|||||++|+..+||.++.|+-|..|..-
T Consensus 698 YMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDsh--------------------- 756 (1185)
T KOG0388|consen 698 YMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSH--------------------- 756 (1185)
T ss_pred heehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhch---------------------
Confidence 99999999999999999999999999999999999999999999999999998877431
Q ss_pred CCCccch-hhhhhhccccccccCCCcchhHHHHHHHHHHhHhHhhhhccCCcccccCCCCceEEEEEecCCHHHHHHHHH
Q 004925 326 HNSVRHF-CWWNRYVATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYES 404 (723)
Q Consensus 326 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~~~lp~~~~~~~~~~l~~~~~~~y~~ 404 (723)
+.| ++|.+.+....+..... .+-...+|+.+|.+||+||.+++|..+ |..+++..++|.|+..|+.+|+.
T Consensus 757 ----neFseWFSKdIEshAe~~~tl---neqqL~RLH~ILKPFMLRRvKkdV~sE--Lg~Kteidv~CdLs~RQ~~lYq~ 827 (1185)
T KOG0388|consen 757 ----NEFSEWFSKDIESHAEMNTTL---NEQQLQRLHAILKPFMLRRVKKDVISE--LGQKTEIDVYCDLSYRQKVLYQE 827 (1185)
T ss_pred ----HHHHHHHhhhhHhHHHhcCCc---CHHHHHHHHHHHhHHHHHHHHHHHHHH--hccceEEEEEechhHHHHHHHHH
Confidence 122 23333333333322222 233455678999999999999999988 89999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhccCccccccccccccc-CCCcccccc-------------------
Q 004925 405 LYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLR-GETEADAEH------------------- 464 (723)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~-~~~~~~~~~------------------- 464 (723)
+.+..... ..+.++.++|++|+||.++......+.. -+...+..+
T Consensus 828 ik~~iS~~---------------E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~ 892 (1185)
T KOG0388|consen 828 IKRSISSM---------------EMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAK 892 (1185)
T ss_pred HHHHhhHH---------------HHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHH
Confidence 88765422 2234889999999999988754322211 000111100
Q ss_pred -------------ccccccccccCCC-------CCccc--ccCCccchhhh---hhhhcCc-------------------
Q 004925 465 -------------VQQVCGLCNDLAD-------DPVVT--NCGHAFCKACL---FDSSASK------------------- 500 (723)
Q Consensus 465 -------------~~~~~~~~~~~~~-------~~~~~--~~~~~~~~~~~---~~~~~~~------------------- 500 (723)
+...|.....+.. ++..+ ..|.....+.. +.-....
T Consensus 893 d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~ 972 (1185)
T KOG0388|consen 893 DALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEA 972 (1185)
T ss_pred HHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHH
Confidence 1111221111111 11111 11111000000 0000000
Q ss_pred -CCCCCCCCCCCcccccccccCCCCCCccccccCCcccc----chhhccccccCcchHHHHHHHHHHHHHhhcCCceEEE
Q 004925 501 -FVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSS----ILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIV 575 (723)
Q Consensus 501 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvII 575 (723)
.-..--.|..+.-..+...-.++...|...... ...+ +.-+.-......|+|+..|-++|..+ +..+++|++
T Consensus 973 ~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~-~~~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kL--kaegHRvL~ 1049 (1185)
T KOG0388|consen 973 YRLQRHVYCYSPVVAAPPVLISNEADLPEIDLEN-RHIPLNTTIYVPPMNTFITDSGKLVVLDELLPKL--KAEGHRVLM 1049 (1185)
T ss_pred HHhhhheeeeccccCCCCeeeecccCCCCCCccc-cCcccccceecCcHHhhhccccceeeHHHHHHHh--hcCCceEEe
Confidence 000001111111111111111122222111111 0000 11111122356799999999999988 568899999
Q ss_pred EcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEECCCCChhh
Q 004925 576 FSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAV 655 (723)
Q Consensus 576 F~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~ 655 (723)
|.+....++.++++|...|+.+..++|+.+..+|..++.+|+. +++.|+|+||++||-||||+.|+.|||||..|||..
T Consensus 1050 yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~ 1128 (1185)
T KOG0388|consen 1050 YFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA-SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTA 1128 (1185)
T ss_pred hhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC-CceEEEEEecccCcccccccccceEEEecCCCCcch
Confidence 9999999999999999999999999999999999999999999 699999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHhhcccCCC
Q 004925 656 EQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGS 705 (723)
Q Consensus 656 ~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~~~~~~~~~ 705 (723)
..||+.|++|.||+++|+||+|++++|+||.|+.+...|..+..-++.|+
T Consensus 1129 D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm~G~ 1178 (1185)
T KOG0388|consen 1129 DQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVMHGN 1178 (1185)
T ss_pred hhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999888774
No 12
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=9.6e-59 Score=493.56 Aligned_cols=589 Identities=22% Similarity=0.287 Sum_probs=411.8
Q ss_pred ccccccccccCCCCCCCCccCChHHHHHHHHHHHHhcc--------CCCCCCcccCCCCCcHHHHHHHHHhcCccccCCC
Q 004925 9 LDQQNAFMTETAEDPPDLITPLLRYQKEWLAWALKQEE--------SAIRGGILADEMGMGKTIQAIALVLAKREIRGTI 80 (723)
Q Consensus 9 ~~~~~~~~~~~~~~p~~~~~~L~p~Q~~~~~~~~~~~~--------~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~ 80 (723)
+|......-+.+..|-++-.+|+|||..|+.||+..-. ..--|||||+-||||||+++++|+...+....
T Consensus 648 ld~deet~e~~VqV~rslv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~k-- 725 (1567)
T KOG1015|consen 648 LDEDEETKEPLVQVHRSLVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDK-- 725 (1567)
T ss_pred ecchhhhccchhhccHhHHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhc--
Confidence 34444455566677888888999999999999986322 22379999999999999999988765543322
Q ss_pred CccCCCCCCCCCCCCCCceEEEechhhHHHHHHHHHhhcCCC----CcEEEEEeCCCCCCCc----ccc-CCCCEEEech
Q 004925 81 GELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVG----STKVLIYHGSNRERSA----KQF-SEFDFVITTY 151 (723)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~LIv~P~~l~~qW~~ei~~~~~~~----~~~~~~~~g~~~~~~~----~~~-~~~~ivi~t~ 151 (723)
.+++.+|||||.+++.+|..||.+|.+.. .+.|..+...+..... ..| ..-.|.|+.|
T Consensus 726 -------------lg~ktaLvV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGY 792 (1567)
T KOG1015|consen 726 -------------LGFKTALVVCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGY 792 (1567)
T ss_pred -------------cCCceEEEEcchHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEeh
Confidence 14589999999999999999999999831 2333333333332111 112 3457999999
Q ss_pred hhhHHhhhhccCCCcccccccCccchh-hhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCC
Q 004925 152 SIIEADYRKHVMPPKQKCQYCGKSFYQ-KKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQ 230 (723)
Q Consensus 152 ~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (723)
++++.....- .-+. +..+.+..
T Consensus 793 dmyRnLa~gr-------------~vk~rk~ke~f~k-------------------------------------------- 815 (1567)
T KOG1015|consen 793 DMYRNLAQGR-------------NVKSRKLKEIFNK-------------------------------------------- 815 (1567)
T ss_pred HHHHHHhccc-------------chhhhHHHHHHHH--------------------------------------------
Confidence 9998763310 0000 00111111
Q ss_pred CCCCCCCCccceeeEEEEeeccccccCCCcHHHHHHHhhhcCceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCc
Q 004925 231 KPSGGKSPLHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCD 310 (723)
Q Consensus 231 ~~~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~l~~l~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~ 310 (723)
.+..-.+|+||+||+|.++|..+..++++..+.+.+|++|||||++|++.+.|-|++|+.
T Consensus 816 -------~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVK------------- 875 (1567)
T KOG1015|consen 816 -------ALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVK------------- 875 (1567)
T ss_pred -------hccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcc-------------
Confidence 133345799999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCCCCCCCCCCCCCccchhhhhhhccccccccCCCcchhHHH------HHHHHHHhHhHhhhhccCCcccccCCCC
Q 004925 311 CKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRAM------ILLKHKVLRSVILRRTKKGRAADLALPP 384 (723)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~~~rr~~~~~~~~~~lp~ 384 (723)
+++++....|...|.+||++|...+.....+ ..+|+.+|.-++-|+...-+... |||
T Consensus 876 ---------------e~lLGs~~EfrNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~--LPP 938 (1567)
T KOG1015|consen 876 ---------------ENLLGSIKEFRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKF--LPP 938 (1567)
T ss_pred ---------------cccccCcHHHHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc--CCC
Confidence 6677778889999999999998877654332 45667888889988887766655 999
Q ss_pred ceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHhcccc---ccHHHHHHHHHHHHhhccCccccccccccccc-CCCcc
Q 004925 385 RIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTVM---NNYAHIFDLLTRLRQAVDHPYLVVYSKTASLR-GETEA 460 (723)
Q Consensus 385 ~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~-~~~~~ 460 (723)
+++.++.+.|++.|..+|+.+... ... .++... +....+|+...-|+++-.||+..........- ....+
T Consensus 939 K~eyVi~vrltelQ~~LYq~yL~h-~~~-----~G~d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~se 1012 (1567)
T KOG1015|consen 939 KHEYVIAVRLTELQCKLYQYYLDH-LTG-----VGNDSEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSE 1012 (1567)
T ss_pred ceeEEEEEeccHHHHHHHHHHHhh-ccc-----cCCccccccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccc
Confidence 999999999999999999988762 111 111111 24467889999999999999987764333221 11111
Q ss_pred ccccccccccccccCCCCCcccccCCccchhh-----hhhhhcCcCCCCCCCCCCCcccccccccCCCC-------CCcc
Q 004925 461 DAEHVQQVCGLCNDLADDPVVTNCGHAFCKAC-----LFDSSASKFVAKCPTCSIPLTVDFTANEGAGN-------RTSK 528 (723)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 528 (723)
+. ..-++|....++..-++.+. +|... ..+....++.+...+. ..+.+.......... ..+.
T Consensus 1013 dd----m~~fi~D~sde~e~s~~s~d-~~~~~ks~~~s~~Desss~~~~~g~~-ev~k~k~rk~r~~~~~~~~~~g~~~D 1086 (1567)
T KOG1015|consen 1013 DD----MDEFIADDSDETEMSLSSDD-YTKKKKSGKKSKKDESSSGSGSDGDV-EVIKVKNRKSRGGGEGNVDETGNNPD 1086 (1567)
T ss_pred cc----hhccccCCCccccccccccc-hhhcccccccccccccccccccCCch-hhhhhhhhhccccccCcccccCCCcc
Confidence 11 11223333333322222211 00000 0000011111111100 000000000000000 0000
Q ss_pred c--cc----cC---Cccc-------cchhhccccccCcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHh
Q 004925 529 T--TI----KG---FKSS-------SILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK 592 (723)
Q Consensus 529 ~--~~----~~---~~~~-------~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~ 592 (723)
. .+ .+ .++. .+....+...+..|+||-.|+++|... ..=|.|+|||+|...+++.|.++|+.
T Consensus 1087 ~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mc--eeIGDKlLVFSQSL~SLdLIe~fLe~ 1164 (1567)
T KOG1015|consen 1087 VSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMC--EEIGDKLLVFSQSLISLDLIEDFLEL 1164 (1567)
T ss_pred hHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHH--HHhcceeEEeecccchhHHHHHHHHh
Confidence 1 00 00 0111 233344556677899999999999987 44568999999999999999999986
Q ss_pred C----------------------CCeEEEeecCCCHHHHHHHHHhhcCCCC--ceEEEEecCCCcccccccccCEEEEEC
Q 004925 593 S----------------------GVNCVQLVGSMSIPARDAAINRFTEDPD--CKIFLMSLKAGGVALNLTVASHVFLMD 648 (723)
Q Consensus 593 ~----------------------g~~~~~i~g~~~~~~r~~~i~~F~~~~~--~~vll~s~~~~~eGlnL~~a~~vI~~d 648 (723)
. |..|..++|+++..+|++...+||+..+ .+++|+||++|+-||||..||+||+||
T Consensus 1165 v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfD 1244 (1567)
T KOG1015|consen 1165 VSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFD 1244 (1567)
T ss_pred hcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEe
Confidence 2 6679999999999999999999998544 677999999999999999999999999
Q ss_pred CCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHhhcccCCCccccCCCCHHHHHhhh
Q 004925 649 PWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLF 721 (723)
Q Consensus 649 ~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~l~ 721 (723)
..|||+...|.|-|+||+||+++|++|+|++.||+|+.||.++..|..+...+++.....+ -++.+||--||
T Consensus 1245 asWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls~RVVDeqQv~R-hy~~neLteLy 1316 (1567)
T KOG1015|consen 1245 ASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLSFRVVDEQQVER-HYTMNELTELY 1316 (1567)
T ss_pred cccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhhhhhhhhHHHHHH-HhhHhhhHHHh
Confidence 9999999999999999999999999999999999999999999999999999887543322 34444544444
No 13
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.7e-60 Score=514.52 Aligned_cols=467 Identities=30% Similarity=0.495 Sum_probs=389.4
Q ss_pred CCCCCCCCcc-CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCC
Q 004925 19 TAEDPPDLIT-PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIK 97 (723)
Q Consensus 19 ~~~~p~~~~~-~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (723)
..++|+-+.. .|++||+.|+.||.....+. -+||||||||+|||+++|+++.+..+..... |
T Consensus 383 v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNn-LNGILADEMGLGKTIQtIsLitYLmE~K~~~----------------G 445 (1157)
T KOG0386|consen 383 VAKQPSSLQGGELKEYQLHGLQWMVSLYNNN-LNGILADEMGLGKTIQTISLITYLMEHKQMQ----------------G 445 (1157)
T ss_pred cccCcchhcCCCCchhhhhhhHHHhhccCCC-cccccchhcccchHHHHHHHHHHHHHHcccC----------------C
Confidence 3445666554 89999999999999999998 7999999999999999999999988766543 7
Q ss_pred ceEEEechhhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc----cccCCCCEEEechhhhHHhhhhccCCCcccccccC
Q 004925 98 ATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSA----KQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCG 173 (723)
Q Consensus 98 ~~LIv~P~~l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~ 173 (723)
|.|||||.+.+.+|..|+.+|.| .+..+.|.|+...+.. ...+.++|++|||+-+-++
T Consensus 446 P~LvivPlstL~NW~~Ef~kWaP--Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikd---------------- 507 (1157)
T KOG0386|consen 446 PFLIIVPLSTLVNWSSEFPKWAP--SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKD---------------- 507 (1157)
T ss_pred CeEEeccccccCCchhhcccccc--ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCC----------------
Confidence 99999999999999999999998 8999999998876642 2237899999999987443
Q ss_pred ccchhhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccc
Q 004925 174 KSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAH 253 (723)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH 253 (723)
+..|..+.|.++||||+|
T Consensus 508 --------------------------------------------------------------k~lLsKI~W~yMIIDEGH 525 (1157)
T KOG0386|consen 508 --------------------------------------------------------------KALLSKISWKYMIIDEGH 525 (1157)
T ss_pred --------------------------------------------------------------HHHHhccCCcceeecccc
Confidence 335788999999999999
Q ss_pred cccCCCcHHHHHHH-hhhcCceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCcccccCCCCCCCCCCCCCCccch
Q 004925 254 FIKDRRSNTAKAVL-ALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHF 332 (723)
Q Consensus 254 ~~kn~~s~~~~~l~-~l~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (723)
++||..++.+..+. ...+.+|++|||||++|++.++|++++++-|..|.. -
T Consensus 526 RmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS----------------------------~ 577 (1157)
T KOG0386|consen 526 RMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNS----------------------------C 577 (1157)
T ss_pred cccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhh----------------------------H
Confidence 99999999999888 558999999999999999999999999999776643 2
Q ss_pred hhhhhhccccccccCC----CcchhHHHHHHHHHHhHhHhhhhccCCcccccCCCCceEEEEEecCCHHHHHHHHHHHHH
Q 004925 333 CWWNRYVATPIQTHGN----SYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSE 408 (723)
Q Consensus 333 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~~~lp~~~~~~~~~~l~~~~~~~y~~~~~~ 408 (723)
..|..-+..|+...+. .....--++.+++.+|++|++||.+++|... +|.++..++.|.||.-|+.+|..+...
T Consensus 578 ~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~--LPdKve~viKC~mSalQq~lY~~m~~~ 655 (1157)
T KOG0386|consen 578 KAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQE--LPDKVEDVIKCDMSALQQSLYKQMQNK 655 (1157)
T ss_pred hHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhh--CchhhhHhhheehhhhhHhhhHHHHhC
Confidence 3444445566665552 2233344678889999999999999999888 999999999999999999999877632
Q ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHhhccCcccccccccccccCCCccccccccccccccccCCCCCcccccCCcc
Q 004925 409 SQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAF 488 (723)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (723)
-..... .......+..+++.+..+|++|+||+++........ .+.+
T Consensus 656 g~l~~d----~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~----------------~~~~-------------- 701 (1157)
T KOG0386|consen 656 GQLLKD----TAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYT----------------LHYD-------------- 701 (1157)
T ss_pred CCCCcC----chhccccchhhhhHhHHHHHhcCCchhhhhhccccc----------------cccC--------------
Confidence 211111 112233455788999999999999999842211000 0000
Q ss_pred chhhhhhhhcCcCCCCCCCCCCCcccccccccCCCCCCccccccCCccccchhhccccccCcchHHHHHHHHHHHHHhhc
Q 004925 489 CKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERD 568 (723)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~ 568 (723)
..+.+..++|+.-+-.+|-.+ +.
T Consensus 702 -------------------------------------------------------~~dL~R~sGKfELLDRiLPKL--ka 724 (1157)
T KOG0386|consen 702 -------------------------------------------------------IKDLVRVSGKFELLDRILPKL--KA 724 (1157)
T ss_pred -------------------------------------------------------hhHHHHhccHHHHHHhhhHHH--Hh
Confidence 012245688999999998888 45
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcC-CCCceEEEEecCCCcccccccccCEEEEE
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE-DPDCKIFLMSLKAGGVALNLTVASHVFLM 647 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~-~~~~~vll~s~~~~~eGlnL~~a~~vI~~ 647 (723)
.+++|+.|++.....+.++.+|.-.++++..++|+++.++|...++.|+. ++.+++||.++.+|+.|+|||.|+.||+|
T Consensus 725 tgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviif 804 (1157)
T KOG0386|consen 725 TGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIF 804 (1157)
T ss_pred cCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEe
Confidence 77999999999999999999999999999999999999999999999998 66789999999999999999999999999
Q ss_pred CCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHhhcccC
Q 004925 648 DPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVG 703 (723)
Q Consensus 648 d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~~~~~~~ 703 (723)
|..|||....||..|++|+||+++|.|+++++.+++||.|+..+..|..+-..+..
T Consensus 805 dsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviq 860 (1157)
T KOG0386|consen 805 DSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQ 860 (1157)
T ss_pred cCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhh
Confidence 99999999999999999999999999999999999999999999988877666653
No 14
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=4.4e-56 Score=489.52 Aligned_cols=528 Identities=38% Similarity=0.632 Sum_probs=444.0
Q ss_pred HHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhhHHHH
Q 004925 32 RYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQW 111 (723)
Q Consensus 32 p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~~qW 111 (723)
.+|.....|+........+|||++|+||+|||+++++++......... .++....+.+|||||.+++.||
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~----------~~~~~~~kttLivcp~s~~~qW 204 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKE----------EDRQKEFKTTLIVCPTSLLTQW 204 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcc----------hhhccccCceeEecchHHHHHH
Confidence 566666666666666777999999999999999999999876544330 1122245899999999999999
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCCCCCccccCCCCEEEechhhhHHhhhhccCCCcccccccCccchhhhhhhhhhhccCC
Q 004925 112 VSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHLKYFCGP 191 (723)
Q Consensus 112 ~~ei~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (723)
..|+.+....+.+.+++|+| +......+..+++|+|||.++..
T Consensus 205 ~~elek~~~~~~l~v~v~~g--r~kd~~el~~~dVVltTy~il~~----------------------------------- 247 (674)
T KOG1001|consen 205 KTELEKVTEEDKLSIYVYHG--RTKDKSELNSYDVVLTTYDILKN----------------------------------- 247 (674)
T ss_pred HHHHhccCCccceEEEEecc--cccccchhcCCceEEeeHHHhhc-----------------------------------
Confidence 99998888888999999999 66666778899999999999853
Q ss_pred cchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccccccCCCcHHHHHHHhhhc
Q 004925 192 SAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTAKAVLALES 271 (723)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~l~~l~~ 271 (723)
+.+....|-+||+||||.++|.+++.++++..+.+
T Consensus 248 ---------------------------------------------~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a 282 (674)
T KOG1001|consen 248 ---------------------------------------------SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDA 282 (674)
T ss_pred ---------------------------------------------ccccceeEEEEEeccccccCCcchHhhhhheeecc
Confidence 24666899999999999999999999999999999
Q ss_pred CceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCcccccCCCCCCCCCCCCCCccchhhhhhhccccccccCCCcc
Q 004925 272 SYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYG 351 (723)
Q Consensus 272 ~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (723)
.+||.|||||++|+..++|+++.++..+||.. ...|...+..++....+
T Consensus 283 ~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~----------------------------~~~~~~~i~~p~~~~~~--- 331 (674)
T KOG1001|consen 283 KYRWCLTGTPIQNNLDELYSLFKFLEIHPYCD----------------------------QNYFKLLIQDPDERNKY--- 331 (674)
T ss_pred ceeeeecCChhhhhHHHHHHHHHHhhcCCchh----------------------------hHHHHHHhcChhhhhhH---
Confidence 99999999999999999999999999888854 46788888887776554
Q ss_pred hhHHHHHHHHHHhHhHhhhhccCCccc---ccCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHhccccccHHH
Q 004925 352 GRRAMILLKHKVLRSVILRRTKKGRAA---DLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTVMNNYAH 428 (723)
Q Consensus 352 ~~~~~~~~l~~~l~~~~~rr~~~~~~~---~~~lp~~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (723)
......+..++..+++||++..... -+.+|++.+....+.++..++.+|..+.......+..+...+....++..
T Consensus 332 --~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~ 409 (674)
T KOG1001|consen 332 --KEGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAF 409 (674)
T ss_pred --HHHHHHHHHHHHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHH
Confidence 2334455788899999999874432 24689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCcccccccccccccCCCccc--------cccccccccccccCCCCCcccccCCccchhhhhhhhcCc
Q 004925 429 IFDLLTRLRQAVDHPYLVVYSKTASLRGETEAD--------AEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASK 500 (723)
Q Consensus 429 ~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (723)
++..+.++|++|.||.++............... .... ..|..|.+ .+.+.+..|+|.+|.+|+.+.....
T Consensus 410 ~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~ 487 (674)
T KOG1001|consen 410 FLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAALIIRLIVDLSVS-HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQS 487 (674)
T ss_pred HHHHHHHHHHHccchHhhhhhhhccccccccchHHHHHHHHHhhc-cccccccc-cccceeecccchHHHHHHHhccccc
Confidence 999999999999999988754333222111111 1111 78999999 8889999999999999999999999
Q ss_pred CCCCCCCCCCCcccccccccCCCCCCccccccCCccccchhhccccccCcchHHHHHHHHHHHHHhhcCCceEEEEcccH
Q 004925 501 FVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFT 580 (723)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~ 580 (723)
....||.|+..+.....-...-........ ...|.|+..+...|........ .|+|||+++.
T Consensus 488 ~~~~~~~cr~~l~~~~l~s~~~~~~~~~~~-----------------~~~s~ki~~~~~~l~~~~~s~~-~kiiifsq~~ 549 (674)
T KOG1001|consen 488 ENAPCPLCRNVLKEKKLLSANPLPSIINDL-----------------LPESSKIYAFLKILQAKEMSEQ-PKIVIFSQLI 549 (674)
T ss_pred cCCCCcHHHHHHHHHHHhhcccccchhhhc-----------------cchhhhhHHHHHHHhhccCCCC-CceeeehhHH
Confidence 999999999988755332221111111110 0168899999999984422222 5999999999
Q ss_pred hHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEECCCCChhhHHHHH
Q 004925 581 SFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQ 660 (723)
Q Consensus 581 ~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~i 660 (723)
..+..+...|...|+....++|.|+...|...+..|..++...|++++.++|+.|+||..|+||+.+||.|||..++|+|
T Consensus 550 ~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQai 629 (674)
T KOG1001|consen 550 WGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAI 629 (674)
T ss_pred HHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHhhcccCC
Q 004925 661 DRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGG 704 (723)
Q Consensus 661 GRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~~~~~~~~ 704 (723)
-|++|+||+++|.|++|+..+|+||+|+.++++|+.+....++.
T Consensus 630 dR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~a~~~ 673 (674)
T KOG1001|consen 630 DRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNASAFGE 673 (674)
T ss_pred HHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhhhccC
Confidence 99999999999999999999999999999999999998887764
No 15
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=9.8e-54 Score=488.23 Aligned_cols=471 Identities=20% Similarity=0.225 Sum_probs=327.2
Q ss_pred CCCCccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEE
Q 004925 23 PPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVI 102 (723)
Q Consensus 23 p~~~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv 102 (723)
-.+....|.|||+..+.+++.+.. .++|||||||+|||++|+.++..+...+. .+++|||
T Consensus 146 l~~~~~~l~pHQl~~~~~vl~~~~---~R~LLADEvGLGKTIeAglil~~l~~~g~-----------------~~rvLIV 205 (956)
T PRK04914 146 LRGARASLIPHQLYIAHEVGRRHA---PRVLLADEVGLGKTIEAGMIIHQQLLTGR-----------------AERVLIL 205 (956)
T ss_pred hccCCCCCCHHHHHHHHHHhhccC---CCEEEEeCCcCcHHHHHHHHHHHHHHcCC-----------------CCcEEEE
Confidence 345677899999999988766532 67899999999999999888876554332 2799999
Q ss_pred echhhHHHHHHHHHhhcCCCCcEEEEEeCCCCC----CCccccCCCCEEEechhhhHHhhhhccCCCcccccccCccchh
Q 004925 103 CPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRE----RSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQ 178 (723)
Q Consensus 103 ~P~~l~~qW~~ei~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 178 (723)
||.+|+.||..|+.+++. +.+.++.+..-. .....+..++++|+||+.++..-..
T Consensus 206 vP~sL~~QW~~El~~kF~---l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~------------------ 264 (956)
T PRK04914 206 VPETLQHQWLVEMLRRFN---LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQR------------------ 264 (956)
T ss_pred cCHHHHHHHHHHHHHHhC---CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHH------------------
Confidence 999999999999988874 455555553211 1224556788999999998753111
Q ss_pred hhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccccccCC
Q 004925 179 KKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDR 258 (723)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~kn~ 258 (723)
...+....|++|||||||++++.
T Consensus 265 ---------------------------------------------------------~~~l~~~~wdlvIvDEAH~lk~~ 287 (956)
T PRK04914 265 ---------------------------------------------------------LEQALAAEWDLLVVDEAHHLVWS 287 (956)
T ss_pred ---------------------------------------------------------HHHHhhcCCCEEEEechhhhccC
Confidence 01134457999999999999853
Q ss_pred ---CcHHHHHHHhh--hcCceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCcccccC----CCCCCCCCCCCCCc
Q 004925 259 ---RSNTAKAVLAL--ESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLD----YSSAECPNCPHNSV 329 (723)
Q Consensus 259 ---~s~~~~~l~~l--~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 329 (723)
.|+.++.+..+ +++++++|||||.+|++.++|+++++|+|+.|.+............ .........+. ..
T Consensus 288 ~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~-~~ 366 (956)
T PRK04914 288 EEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKL-SD 366 (956)
T ss_pred CCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcC-CH
Confidence 46678888888 5789999999999999999999999999998865432110000000 00000000000 00
Q ss_pred cchhhhhhhcc--------ccccccCCCcchhHHHHHHHHHHh-----HhHhhhhccCCcccccCCCCceEEEEEecCCH
Q 004925 330 RHFCWWNRYVA--------TPIQTHGNSYGGRRAMILLKHKVL-----RSVILRRTKKGRAADLALPPRIVSLRRDSLDI 396 (723)
Q Consensus 330 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~rr~~~~~~~~~~lp~~~~~~~~~~l~~ 396 (723)
...+....... ..+.... .....+...++..++ +.+|+|+++.++.. +|.+..+.+.+++++
T Consensus 367 ~~~~~l~~ll~~~~~~~l~~~~~~~~--~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~---fp~R~~~~~~l~~~~ 441 (956)
T PRK04914 367 DALNALGELLGEQDIEPLLQAANSDS--EEAQAARQELISELLDRHGTGRVLFRNTRAAVKG---FPKRELHPIPLPLPE 441 (956)
T ss_pred HHHHHHHHHhcccchhHHHhhhcccc--cccHHHHHHHHHHHHhhcCcceEEEeccHHhhcC---CCcCceeEeecCCCH
Confidence 00000000000 0000000 011111222223332 35688999888664 899999999999876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhccCcccccccccccccCCCccccccccccccccccCC
Q 004925 397 READYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLA 476 (723)
Q Consensus 397 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (723)
.....+... .. ..++. +.+|...... . .
T Consensus 442 ~y~~~~~~~---~~-----------------------~~~~~-~l~pe~~~~~-~-------~----------------- 469 (956)
T PRK04914 442 QYQTAIKVS---LE-----------------------ARARD-MLYPEQIYQE-F-------E----------------- 469 (956)
T ss_pred HHHHHHHHh---HH-----------------------HHHHh-hcCHHHHHHH-H-------h-----------------
Confidence 543333210 00 00011 0111000000 0 0
Q ss_pred CCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcccccccccCCCCCCccccccCCccccchhhccccccCcchHHHH
Q 004925 477 DDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEA 556 (723)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~ 556 (723)
........++|+..
T Consensus 470 ------------------------------------------------------------------~~~~~~~~d~Ki~~ 483 (956)
T PRK04914 470 ------------------------------------------------------------------DNATWWNFDPRVEW 483 (956)
T ss_pred ------------------------------------------------------------------hhhhccccCHHHHH
Confidence 00001234789999
Q ss_pred HHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHH-HhCCCeEEEeecCCCHHHHHHHHHhhcCC-CCceEEEEecCCCcc
Q 004925 557 LREEIRFMVERDGSAKGIVFSQFTSFLDLINYSL-HKSGVNCVQLVGSMSIPARDAAINRFTED-PDCKIFLMSLKAGGV 634 (723)
Q Consensus 557 l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L-~~~g~~~~~i~g~~~~~~r~~~i~~F~~~-~~~~vll~s~~~~~e 634 (723)
|.++|+.. .++|+||||++..++..|.+.| ...|+++..++|+|+..+|.++++.|+++ ++++|||+| .++++
T Consensus 484 L~~~L~~~----~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsT-dvgse 558 (956)
T PRK04914 484 LIDFLKSH----RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCS-EIGSE 558 (956)
T ss_pred HHHHHHhc----CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEec-hhhcc
Confidence 99988754 4789999999999999999999 46799999999999999999999999985 368877655 99999
Q ss_pred cccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHhhcccCCCccccCCCCH
Q 004925 635 ALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTE 714 (723)
Q Consensus 635 GlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~~~~~~~~~~~~~~~~~~ 714 (723)
|+||+.|++||+||+||||..++|||||++|+||++.|.||+++.++|+|+.+++...+|.++++...+.....+.+..+
T Consensus 559 GlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~~v~~~~~~ 638 (956)
T PRK04914 559 GRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGRALYDEFGD 638 (956)
T ss_pred CCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887766666555
Q ss_pred HHHHhh
Q 004925 715 ADMRFL 720 (723)
Q Consensus 715 ~~~~~l 720 (723)
+-...|
T Consensus 639 ~l~~~l 644 (956)
T PRK04914 639 ELIPYL 644 (956)
T ss_pred HHHHHH
Confidence 544444
No 16
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=1.5e-52 Score=420.95 Aligned_cols=430 Identities=26% Similarity=0.362 Sum_probs=323.7
Q ss_pred CCCCccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEE
Q 004925 23 PPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVI 102 (723)
Q Consensus 23 p~~~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv 102 (723)
|+.+-..|.|||++|+.|.+++. +.++||||||+|||++||+++.+++.+ +|.|||
T Consensus 192 d~kLvs~LlPFQreGv~faL~Rg----GR~llADeMGLGKTiQAlaIA~yyraE--------------------wplliV 247 (689)
T KOG1000|consen 192 DPKLVSRLLPFQREGVIFALERG----GRILLADEMGLGKTIQALAIARYYRAE--------------------WPLLIV 247 (689)
T ss_pred CHHHHHhhCchhhhhHHHHHhcC----CeEEEecccccchHHHHHHHHHHHhhc--------------------CcEEEE
Confidence 56666789999999999998863 556899999999999999999998775 789999
Q ss_pred echhhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccccCCCCEEEechhhhHHhhhhccCCCcccccccCccchhhhhh
Q 004925 103 CPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLV 182 (723)
Q Consensus 103 ~P~~l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (723)
||.++...|.+++.+|+|--.. +.+..+..... +..-.-..|.|++|+.+....+-
T Consensus 248 cPAsvrftWa~al~r~lps~~p-i~vv~~~~D~~-~~~~t~~~v~ivSye~ls~l~~~---------------------- 303 (689)
T KOG1000|consen 248 CPASVRFTWAKALNRFLPSIHP-IFVVDKSSDPL-PDVCTSNTVAIVSYEQLSLLHDI---------------------- 303 (689)
T ss_pred ecHHHhHHHHHHHHHhcccccc-eEEEecccCCc-cccccCCeEEEEEHHHHHHHHHH----------------------
Confidence 9999999999999999994332 44444443322 11123346899999998766432
Q ss_pred hhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccccccCCCcHH
Q 004925 183 VHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNT 262 (723)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~ 262 (723)
+..-.|..||+||+|++|+..+++
T Consensus 304 --------------------------------------------------------l~~~~~~vvI~DEsH~Lk~sktkr 327 (689)
T KOG1000|consen 304 --------------------------------------------------------LKKEKYRVVIFDESHMLKDSKTKR 327 (689)
T ss_pred --------------------------------------------------------HhcccceEEEEechhhhhccchhh
Confidence 223359999999999999999999
Q ss_pred HHHHHhh--hcCceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCcccccCCCCCCCCCCCCCCccchhhhhhhcc
Q 004925 263 AKAVLAL--ESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVA 340 (723)
Q Consensus 263 ~~~l~~l--~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (723)
++++..+ .+.+.++|||||-..+|.|+|.++..+++..|.+ |-.|...+.
T Consensus 328 ~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~----------------------------f~efa~rYC 379 (689)
T KOG1000|consen 328 TKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPN----------------------------FHEFAIRYC 379 (689)
T ss_pred hhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhccccccc----------------------------HHHHHHHhc
Confidence 9988877 6789999999999999999999999998766543 222222222
Q ss_pred ccccc-cCCCcchhHHHHHHHHHHhHhHhhhhccCCcccccCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 004925 341 TPIQT-HGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQA 419 (723)
Q Consensus 341 ~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~~~lp~~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~ 419 (723)
+.-.- ....+.+--...++..-+...+|+||.+.+++.+ ||++. ..+.+.....+....+.+...... +...
T Consensus 380 d~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~q--LPpKr-r~Vv~~~~gr~da~~~~lv~~a~~----~t~~ 452 (689)
T KOG1000|consen 380 DGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQ--LPPKR-REVVYVSGGRIDARMDDLVKAAAD----YTKV 452 (689)
T ss_pred CccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhh--CCccc-eEEEEEcCCccchHHHHHHHHhhh----cchh
Confidence 21110 0000111111222223445678999999999988 88884 333444444444444444333222 0000
Q ss_pred ccccccHHHHHHHHHHHHhhccCcccccccccccccCCCccccccccccccccccCCCCCcccccCCccchhhhhhhhcC
Q 004925 420 GTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSAS 499 (723)
Q Consensus 420 ~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (723)
.....+. ...+...++
T Consensus 453 ~~~e~~~---~~l~l~y~~------------------------------------------------------------- 468 (689)
T KOG1000|consen 453 NSMERKH---ESLLLFYSL------------------------------------------------------------- 468 (689)
T ss_pred hhhhhhh---HHHHHHHHH-------------------------------------------------------------
Confidence 0000000 001111100
Q ss_pred cCCCCCCCCCCCcccccccccCCCCCCccccccCCccccchhhccccccCcchHHHHHHHHHHH--HHhhcCCceEEEEc
Q 004925 500 KFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRF--MVERDGSAKGIVFS 577 (723)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~--~~~~~~~~KvIIF~ 577 (723)
..-.|+.++.+.|.. ++-..++.|++||+
T Consensus 469 -------------------------------------------------tgiaK~~av~eyi~~~~~l~d~~~~KflVFa 499 (689)
T KOG1000|consen 469 -------------------------------------------------TGIAKAAAVCEYILENYFLPDAPPRKFLVFA 499 (689)
T ss_pred -------------------------------------------------hcccccHHHHHHHHhCcccccCCCceEEEEe
Confidence 123488888888876 12256889999999
Q ss_pred ccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEECCCCChhhHH
Q 004925 578 QFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQ 657 (723)
Q Consensus 578 ~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~ 657 (723)
++..+++.|+..+.+.++....|+|+++..+|+.+++.|+.+....|-|++..+++.||+|..|+.|+|.+++|||..+.
T Consensus 500 HH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLl 579 (689)
T KOG1000|consen 500 HHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLL 579 (689)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHhhcccCC
Q 004925 658 QAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGG 704 (723)
Q Consensus 658 Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~~~~~~~~ 704 (723)
||..|+||+||+..|.||+|++++|+|++++..+..|.+.+..+-.+
T Consensus 580 QAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~gl~ 626 (689)
T KOG1000|consen 580 QAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVGLS 626 (689)
T ss_pred echhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhcccC
Confidence 99999999999999999999999999999999999999988876544
No 17
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.7e-50 Score=484.53 Aligned_cols=501 Identities=38% Similarity=0.595 Sum_probs=401.0
Q ss_pred CCCccCChHHHHHHHHHHH-HhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEE
Q 004925 24 PDLITPLLRYQKEWLAWAL-KQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVI 102 (723)
Q Consensus 24 ~~~~~~L~p~Q~~~~~~~~-~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv 102 (723)
..+...|+|||.+++.|+. ...... .||+|||+||+|||+++++++.......... .++.|||
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~~~-~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~---------------~~~~liv 396 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRSNL-LGGILADDMGLGKTVQTIALLLSLLESIKVY---------------LGPALIV 396 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhcc-CCCcccccccchhHHHHHHHHHhhhhcccCC---------------CCCeEEE
Confidence 4666799999999999998 455555 8999999999999999999998743333221 2799999
Q ss_pred echhhHHHHHHHHHhhcCCCCcE-EEEEeCCCCC-----CCccccCC------CCEEEechhhhHHhhhhccCCCccccc
Q 004925 103 CPVAAVTQWVSEINRFTSVGSTK-VLIYHGSNRE-----RSAKQFSE------FDFVITTYSIIEADYRKHVMPPKQKCQ 170 (723)
Q Consensus 103 ~P~~l~~qW~~ei~~~~~~~~~~-~~~~~g~~~~-----~~~~~~~~------~~ivi~t~~~l~~~~~~~~~~~~~~~~ 170 (723)
||.+++.+|..|+.+|.+ .++ +..++|.... .....+.. ++++++||+.++....
T Consensus 397 ~p~s~~~nw~~e~~k~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~----------- 463 (866)
T COG0553 397 VPASLLSNWKREFEKFAP--DLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLV----------- 463 (866)
T ss_pred ecHHHHHHHHHHHhhhCc--cccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhh-----------
Confidence 999999999999999998 677 8999998752 11222222 8999999999987310
Q ss_pred ccCccchhhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEee
Q 004925 171 YCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILD 250 (723)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiD 250 (723)
....+....|+++|+|
T Consensus 464 ----------------------------------------------------------------~~~~l~~~~~~~~v~D 479 (866)
T COG0553 464 ----------------------------------------------------------------DHGGLKKIEWDRVVLD 479 (866)
T ss_pred ----------------------------------------------------------------hHHHHhhceeeeeehh
Confidence 0224777899999999
Q ss_pred ccccccCCCcHHHHHHHhhhcCceEEEeCcCCCCchhhHHHHHH-HhccCcCCcccccCCcccccCCCCCCCCCCCCCCc
Q 004925 251 EAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVR-FLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSV 329 (723)
Q Consensus 251 EaH~~kn~~s~~~~~l~~l~~~~~l~LTaTP~~n~~~dl~~~l~-lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (723)
|+|.++|..+..++.+..+++.+++.|||||+.|++.++|++++ ++.|..+..
T Consensus 480 Ea~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~-------------------------- 533 (866)
T COG0553 480 EAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGT-------------------------- 533 (866)
T ss_pred hHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccc--------------------------
Confidence 99999999999999999999999999999999999999999999 988665531
Q ss_pred cchhhhhhhccccccccCCCc--chhHHHHHHHHHHhHhHhhhhccCC--cccccCCCCceEEEEEecCCHHHHHHHHHH
Q 004925 330 RHFCWWNRYVATPIQTHGNSY--GGRRAMILLKHKVLRSVILRRTKKG--RAADLALPPRIVSLRRDSLDIREADYYESL 405 (723)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~rr~~~~--~~~~~~lp~~~~~~~~~~l~~~~~~~y~~~ 405 (723)
.+..|...+..+........ .........++.+++++++||.+.+ +... +|++......+.++..|..+|...
T Consensus 534 -~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~--Lp~k~e~~~~~~l~~~q~~~y~~~ 610 (866)
T COG0553 534 -SFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSPFILRRTKEDVEVLKE--LPPKIEKVLECELSEEQRELYEAL 610 (866)
T ss_pred -hHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHhhcccccchhHHHh--CChhhhhhhhhcccHHHHHHHHHH
Confidence 35667777777776665533 1122223336789999999999999 5555 999999999999999999999999
Q ss_pred HH---HHHHHHHHHHHhccc--cc--cHHHHHHHHHHHHhhccCcccccccc-cccccCCCccccccccccccccccCCC
Q 004925 406 YS---ESQAQFNTYVQAGTV--MN--NYAHIFDLLTRLRQAVDHPYLVVYSK-TASLRGETEADAEHVQQVCGLCNDLAD 477 (723)
Q Consensus 406 ~~---~~~~~~~~~~~~~~~--~~--~~~~~~~~l~~lr~~~~~p~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (723)
.. .....+......... .. ....++..+.++|++|+||.++.... .... ..+.....
T Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~---------------~~~~~~~~ 675 (866)
T COG0553 611 LEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPALVDEGLEATFD---------------RIVLLLRE 675 (866)
T ss_pred HHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHhccCccccccccccccc---------------hhhhhhhc
Confidence 98 444444433222211 01 25678899999999999999875442 1000 00000000
Q ss_pred CCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcccccccccCCCCCCccccccCCccccchhhccccccCcc-hHHHH
Q 004925 478 DPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSS-TKIEA 556 (723)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~Kl~~ 556 (723)
+.. ........+..+ .|+..
T Consensus 676 ~~~-----------------------------------------------------------~~~~~~~~~~~s~~k~~~ 696 (866)
T COG0553 676 DKD-----------------------------------------------------------FDYLKKPLIQLSKGKLQA 696 (866)
T ss_pred ccc-----------------------------------------------------------cccccchhhhccchHHHH
Confidence 000 000011112335 79999
Q ss_pred HHHHH-HHHHhhcCCc--eEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCc
Q 004925 557 LREEI-RFMVERDGSA--KGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGG 633 (723)
Q Consensus 557 l~~~l-~~~~~~~~~~--KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~ 633 (723)
+.+++ ..... .+. |++||++|..+++.|...|...++.++.++|+++..+|+..+++|++++...|+++++++|+
T Consensus 697 l~~ll~~~~~~--~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg 774 (866)
T COG0553 697 LDELLLDKLLE--EGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGG 774 (866)
T ss_pred HHHHHHHHHHh--hcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccc
Confidence 99999 56643 445 99999999999999999999999999999999999999999999999888999999999999
Q ss_pred ccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHhhcccCC-CccccCCC
Q 004925 634 VALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGG-SADAFGKL 712 (723)
Q Consensus 634 eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~~~~~~~~-~~~~~~~~ 712 (723)
.|+||+.|++||++|+.|||....|++.|++|+||+++|.||+++++||+||.+..++..|..+...++++ ........
T Consensus 775 ~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~~~~~~~~~~ 854 (866)
T COG0553 775 LGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDAEGEKELSKL 854 (866)
T ss_pred cceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhhhcccchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 88999999
Q ss_pred CHHHHHhhhc
Q 004925 713 TEADMRFLFV 722 (723)
Q Consensus 713 ~~~~~~~l~~ 722 (723)
+.+++..||.
T Consensus 855 ~~~~~~~l~~ 864 (866)
T COG0553 855 SIEDLLDLFS 864 (866)
T ss_pred cHHHHHHHhc
Confidence 9999999985
No 18
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=1.2e-48 Score=408.99 Aligned_cols=582 Identities=21% Similarity=0.259 Sum_probs=392.7
Q ss_pred CCCccCChHHHHHHHHHHHHhcc---------CCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCC
Q 004925 24 PDLITPLLRYQKEWLAWALKQEE---------SAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLL 94 (723)
Q Consensus 24 ~~~~~~L~p~Q~~~~~~~~~~~~---------~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~ 94 (723)
|.+..-++|||+-|++||+...- ++ -|||||+.||+|||+++|+++..+++.-.+
T Consensus 249 pqla~v~kPHQiGGiRFlYDN~iESl~rykkSsG-FGCILAHSMGLGKTlQVisF~diflRhT~A--------------- 312 (1387)
T KOG1016|consen 249 PQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSG-FGCILAHSMGLGKTLQVISFSDIFLRHTKA--------------- 312 (1387)
T ss_pred hhhHhhcCccccCcEEEehhhHHHHHhhccccCC-cceeeeeccccCceeEEeehhHHHhhcCcc---------------
Confidence 34556889999999999875332 45 799999999999999999999988776554
Q ss_pred CCCceEEEechhhHHHHHHHHHhhcCC---------CCcEEEEEeCCCCCCCc-----cc-cCCCCEEEechhhhHHhhh
Q 004925 95 GIKATLVICPVAAVTQWVSEINRFTSV---------GSTKVLIYHGSNRERSA-----KQ-FSEFDFVITTYSIIEADYR 159 (723)
Q Consensus 95 ~~~~~LIv~P~~l~~qW~~ei~~~~~~---------~~~~~~~~~g~~~~~~~-----~~-~~~~~ivi~t~~~l~~~~~ 159 (723)
+.+|+|||-+.+.+|..|+..|.|. ..+.+.++....+.... .. .....|+++.|++++-...
T Consensus 313 --KtVL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~l 390 (1387)
T KOG1016|consen 313 --KTVLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLIL 390 (1387)
T ss_pred --ceEEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHH
Confidence 8999999999999999999999983 12334443332222111 11 2456799999999987765
Q ss_pred hccCCCcccccccCccchhhhhhhh-hhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCC
Q 004925 160 KHVMPPKQKCQYCGKSFYQKKLVVH-LKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSP 238 (723)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (723)
+.... ..+++....+ ...+...+....... . ++.....
T Consensus 391 k~~~~----------~grpkkt~kr~~~~~i~~d~eD~~qe-------~------------------------~~li~~A 429 (1387)
T KOG1016|consen 391 KTLPK----------KGRPKKTLKRISSGFIKDDSEDQRQE-------A------------------------YSLIRSA 429 (1387)
T ss_pred hcccc----------cCCccccccccCCcccCCchhhhHHH-------H------------------------HHHHHHH
Confidence 52210 0001111000 111111111111000 0 0000111
Q ss_pred ccceeeEEEEeeccccccCCCcHHHHHHHhhhcCceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCcccccCCCC
Q 004925 239 LHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSS 318 (723)
Q Consensus 239 l~~~~~~~vIiDEaH~~kn~~s~~~~~l~~l~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~~~~~~~ 318 (723)
|..=.+|+||+||.|++||....++.+|+.+++++|+.|||-|++|++-|.|-|+.|+.
T Consensus 430 L~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDFVR--------------------- 488 (1387)
T KOG1016|consen 430 LLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDFVR--------------------- 488 (1387)
T ss_pred hcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhheecc---------------------
Confidence 33345799999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCccchhhhhhhccccccccCCCcchhH------HHHHHHHHHhHhHhhhhccCCcccccCCCCceEEEEEe
Q 004925 319 AECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRR------AMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRD 392 (723)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~l~~~~~rr~~~~~~~~~~lp~~~~~~~~~ 392 (723)
+.+++....|...+.+|+.++--.+.... .....|+.++.-|+-||+-.-+.. .||.+.+.++.+
T Consensus 489 -------P~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~--~LP~k~EyViLv 559 (1387)
T KOG1016|consen 489 -------PKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKK--ILPEKKEYVILV 559 (1387)
T ss_pred -------ccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhh--hcccccceEEEE
Confidence 66777888999999999998876654432 335567889999999998765433 499999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhccCcccccccccc--cccCCCccc----ccccc
Q 004925 393 SLDIREADYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTA--SLRGETEAD----AEHVQ 466 (723)
Q Consensus 393 ~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~--~~~~~~~~~----~~~~~ 466 (723)
.++..|+++|+.+..+....+.. .+-.. .+.+.++.-+-++=+||......... .......+. .....
T Consensus 560 r~s~iQR~LY~~Fm~d~~r~~~~---~~~~~---~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~ 633 (1387)
T KOG1016|consen 560 RKSQIQRQLYRNFMLDAKREIAA---NNDAV---FNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQ 633 (1387)
T ss_pred eHHHHHHHHHHHHHHHHHHhhcc---ccccc---cChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhccc
Confidence 99999999999887544332211 11100 12233444444555777654321110 000000000 00111
Q ss_pred ccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcccccccccCCCCCCcccc--ccCCccccchhhcc
Q 004925 467 QVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTT--IKGFKSSSILNRIQ 544 (723)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 544 (723)
..|.-.+....++... -.... .+......+-.+....| .+.+.+.. ..+..........+
T Consensus 634 ~~~~P~~~~~~~~s~~-laSs~-~k~~n~t~kp~~s~~~p----------------~f~ee~~e~~~y~~w~~el~~nYq 695 (1387)
T KOG1016|consen 634 QQQSPFNSIPSNPSTP-LASST-SKSANKTKKPRGSKKAP----------------KFDEEDEEVEKYSDWTFELFENYQ 695 (1387)
T ss_pred ccCCCCCCCCCCCCCc-ccchh-hhhhcccCCcccCcCCC----------------CcccccccccchhhHHHHHHhhhh
Confidence 1121111111111000 00000 00000000000001100 01111111 11111222333335
Q ss_pred ccccCcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhC------------------CCeEEEeecCCCH
Q 004925 545 LDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS------------------GVNCVQLVGSMSI 606 (723)
Q Consensus 545 ~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~------------------g~~~~~i~g~~~~ 606 (723)
..-...++|+-.+++++++-. .-++|+|||++....++.|+..|.+. ...+...+|.++.
T Consensus 696 ~gvLen~pk~V~~~~~~des~--~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a 773 (1387)
T KOG1016|consen 696 EGVLENGPKIVISLEILDEST--QIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSA 773 (1387)
T ss_pred cccccCCCceEEEEeeecccc--ccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCccc
Confidence 555667788888888887763 46789999999999999999999875 2347789999999
Q ss_pred HHHHHHHHhhcCCCCce-EEEEecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHH
Q 004925 607 PARDAAINRFTEDPDCK-IFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEE 685 (723)
Q Consensus 607 ~~r~~~i~~F~~~~~~~-vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee 685 (723)
.+|+++|++|++..++. .+++++++++-||||-+|+++|+||..|||....||..|++|+||+++++||+|++.+++|-
T Consensus 774 ~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEk 853 (1387)
T KOG1016|consen 774 ADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEK 853 (1387)
T ss_pred chHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHH
Confidence 99999999999977765 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCccccCCCCHHHHHhhh
Q 004925 686 RILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLF 721 (723)
Q Consensus 686 ~~~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~l~ 721 (723)
.||+|+..|..+.+.++++ ......++.+|+++|+
T Consensus 854 kIydRQIsKqGmsdRvVDd-~np~an~s~Ke~enLl 888 (1387)
T KOG1016|consen 854 KIYDRQISKQGMSDRVVDD-ANPDANISQKELENLL 888 (1387)
T ss_pred HHHHHHHhhccchhhhhcc-cCccccccHHHHHHHh
Confidence 9999999999999999987 4556678899999886
No 19
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3e-39 Score=357.07 Aligned_cols=356 Identities=20% Similarity=0.269 Sum_probs=256.0
Q ss_pred ccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEech-
Q 004925 27 ITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV- 105 (723)
Q Consensus 27 ~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~- 105 (723)
...|||||.+++.+++.. ...++|+|+++||+|||+++++++.... +++|||||.
T Consensus 253 ~~~LRpYQ~eAl~~~~~~--gr~r~GIIvLPtGaGKTlvai~aa~~l~----------------------k~tLILvps~ 308 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVTAACTVK----------------------KSCLVLCTSA 308 (732)
T ss_pred CCCcCHHHHHHHHHHHhc--CCCCCcEEEeCCCCChHHHHHHHHHHhC----------------------CCEEEEeCcH
Confidence 468999999999998642 2236899999999999999998876431 589999995
Q ss_pred hhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccccCCCCEEEechhhhHHhhhhccCCCcccccccCccchhhhhhhhh
Q 004925 106 AAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHL 185 (723)
Q Consensus 106 ~l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (723)
.++.||.++|.+|+......+..+.|..+... .....|+|+||+++........ ..
T Consensus 309 ~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~~---~~~~~VvVtTYq~l~~~~~r~~-----------------~~---- 364 (732)
T TIGR00603 309 VSVEQWKQQFKMWSTIDDSQICRFTSDAKERF---HGEAGVVVSTYSMVAHTGKRSY-----------------ES---- 364 (732)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEecCccccc---ccCCcEEEEEHHHhhcccccch-----------------hh----
Confidence 56899999999997654567778888654422 2457899999999864321100 00
Q ss_pred hhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccccccCCCcHHHHH
Q 004925 186 KYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTAKA 265 (723)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~ 265 (723)
......+....|++||+||||++.+. ...+.
T Consensus 365 -----------------------------------------------~~~l~~l~~~~~gLII~DEvH~lpA~--~fr~i 395 (732)
T TIGR00603 365 -----------------------------------------------EKVMEWLTNREWGLILLDEVHVVPAA--MFRRV 395 (732)
T ss_pred -----------------------------------------------hHHHHHhccccCCEEEEEccccccHH--HHHHH
Confidence 00001244457999999999999543 34456
Q ss_pred HHhhhcCceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCcccccCCCCCCCCCCCCCCccchhhhhhhccccccc
Q 004925 266 VLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQT 345 (723)
Q Consensus 266 l~~l~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (723)
+..+.++++|+|||||..++-. +-.+..++++..|... |.
T Consensus 396 l~~l~a~~RLGLTATP~ReD~~-~~~L~~LiGP~vye~~------------------------------~~--------- 435 (732)
T TIGR00603 396 LTIVQAHCKLGLTATLVREDDK-ITDLNFLIGPKLYEAN------------------------------WM--------- 435 (732)
T ss_pred HHhcCcCcEEEEeecCcccCCc-hhhhhhhcCCeeeecC------------------------------HH---------
Confidence 6777899999999999976521 2223334443332110 11
Q ss_pred cCCCcchhHHHHHHHHHHhHhHhhhhccCCcccccCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 004925 346 HGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTVMNN 425 (723)
Q Consensus 346 ~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~~~lp~~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 425 (723)
. +.....+.+.....+.++|++++...|-.....
T Consensus 436 ----------------e-------------Li~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~----------------- 469 (732)
T TIGR00603 436 ----------------E-------------LQKKGFIANVQCAEVWCPMTPEFYREYLRENSR----------------- 469 (732)
T ss_pred ----------------H-------------HHhCCccccceEEEEEecCCHHHHHHHHHhcch-----------------
Confidence 1 111122566667788999998764444211100
Q ss_pred HHHHHHHHHHHHhhccCcccccccccccccCCCccccccccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCC
Q 004925 426 YAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKC 505 (723)
Q Consensus 426 ~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (723)
.+.+..+
T Consensus 470 --------~k~~l~~----------------------------------------------------------------- 476 (732)
T TIGR00603 470 --------KRMLLYV----------------------------------------------------------------- 476 (732)
T ss_pred --------hhhHHhh-----------------------------------------------------------------
Confidence 0000000
Q ss_pred CCCCCCcccccccccCCCCCCccccccCCccccchhhccccccCcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHH
Q 004925 506 PTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDL 585 (723)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~ 585 (723)
....|+.++..++..+ ..++.|+||||++...+..
T Consensus 477 -------------------------------------------~np~K~~~~~~Li~~h--e~~g~kiLVF~~~~~~l~~ 511 (732)
T TIGR00603 477 -------------------------------------------MNPNKFRACQFLIRFH--EQRGDKIIVFSDNVFALKE 511 (732)
T ss_pred -------------------------------------------hChHHHHHHHHHHHHH--hhcCCeEEEEeCCHHHHHH
Confidence 0135888888888766 3477899999999999888
Q ss_pred HHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEECCCC-ChhhHHHHHHhhh
Q 004925 586 INYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWW-NPAVEQQAQDRIH 664 (723)
Q Consensus 586 l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~w-n~~~~~Q~iGRi~ 664 (723)
+...| + +..++|+++..+|.+++++|++++.+++|+++ +++++||||+.|+++|++++++ ++..+.||+||+.
T Consensus 512 ~a~~L---~--~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~S-kVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRil 585 (732)
T TIGR00603 512 YAIKL---G--KPFIYGPTSQQERMQILQNFQHNPKVNTIFLS-KVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRIL 585 (732)
T ss_pred HHHHc---C--CceEECCCCHHHHHHHHHHHHhCCCccEEEEe-cccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccc
Confidence 88877 3 35689999999999999999977677877766 9999999999999999999985 9999999999999
Q ss_pred hcCCcc-----cEEEEEEEeCCCHHHHHHH
Q 004925 665 RIGQYK-----PIRIVRFLIENTIEERILK 689 (723)
Q Consensus 665 R~Gq~~-----~V~v~~l~~~~t~ee~~~~ 689 (723)
|.+..+ ...+|.|++++|.|+..-.
T Consensus 586 R~~~~~~~~~~~A~fY~lVs~dT~E~~~s~ 615 (732)
T TIGR00603 586 RAKKGSDAEEYNAFFYSLVSKDTQEMYYST 615 (732)
T ss_pred cCCCCCccccccceEEEEecCCchHHHHHH
Confidence 998754 3799999999999987744
No 20
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.5e-37 Score=317.15 Aligned_cols=449 Identities=18% Similarity=0.226 Sum_probs=301.4
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hh
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VA 106 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~ 106 (723)
...|.||...+..++. +++|++.++|+|||++|+.+++.++...+ +.+|+++| ++
T Consensus 14 ie~R~YQ~~i~a~al~------~NtLvvlPTGLGKT~IA~~V~~~~l~~~~------------------~kvlfLAPTKP 69 (542)
T COG1111 14 IEPRLYQLNIAAKALF------KNTLVVLPTGLGKTFIAAMVIANRLRWFG------------------GKVLFLAPTKP 69 (542)
T ss_pred ccHHHHHHHHHHHHhh------cCeEEEecCCccHHHHHHHHHHHHHHhcC------------------CeEEEecCCch
Confidence 3567899999998887 78999999999999999999997776654 57999999 89
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-CccccCCCCEEEechhhhHHhhhhccCCCcccccccCccchhhhhhhhh
Q 004925 107 AVTQWVSEINRFTSVGSTKVLIYHGSNRER-SAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHL 185 (723)
Q Consensus 107 l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (723)
|+.|....+.+.++.+...+..++|..... +...|....|+++|++++.+++...
T Consensus 70 LV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~G------------------------ 125 (542)
T COG1111 70 LVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAG------------------------ 125 (542)
T ss_pred HHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcC------------------------
Confidence 999999999999988788999999977665 5566899999999999999998753
Q ss_pred hhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccccccCCCcH--HH
Q 004925 186 KYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSN--TA 263 (723)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~kn~~s~--~~ 263 (723)
.+..-.+.+|||||||+.-+..+- ..
T Consensus 126 ----------------------------------------------------rid~~dv~~lifDEAHRAvGnyAYv~Va 153 (542)
T COG1111 126 ----------------------------------------------------RIDLDDVSLLIFDEAHRAVGNYAYVFVA 153 (542)
T ss_pred ----------------------------------------------------ccChHHceEEEechhhhccCcchHHHHH
Confidence 355556899999999998654322 22
Q ss_pred HHHHhh-hcCceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCcccccCCCCCCCCCCCCCCccchhhhhhhcccc
Q 004925 264 KAVLAL-ESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATP 342 (723)
Q Consensus 264 ~~l~~l-~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (723)
+..... +.+..++|||||- ++.+.+...+.-|+....
T Consensus 154 ~~y~~~~k~~~ilgLTASPG-s~~ekI~eV~~nLgIe~v----------------------------------------- 191 (542)
T COG1111 154 KEYLRSAKNPLILGLTASPG-SDLEKIQEVVENLGIEKV----------------------------------------- 191 (542)
T ss_pred HHHHHhccCceEEEEecCCC-CCHHHHHHHHHhCCcceE-----------------------------------------
Confidence 222222 4456889999995 456777777777763321
Q ss_pred ccccCCCcchhHHHHHHHHHHhHhHhhhhcc-CCcccccCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004925 343 IQTHGNSYGGRRAMILLKHKVLRSVILRRTK-KGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGT 421 (723)
Q Consensus 343 ~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~-~~~~~~~~lp~~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~ 421 (723)
.+|... .|+..+ +....+.++.++|+++-.+.-+.+..-....++...+.+-
T Consensus 192 -------------------------evrTE~d~DV~~Y--v~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~ 244 (542)
T COG1111 192 -------------------------EVRTEEDPDVRPY--VKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGV 244 (542)
T ss_pred -------------------------EEecCCCccHHHh--hccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 111111 112222 4556677777888877666665555554444444433322
Q ss_pred cccc----HHHHHHHHHHHHhhccCccc--------------------ccccccccccCCCccccccccccccccccCCC
Q 004925 422 VMNN----YAHIFDLLTRLRQAVDHPYL--------------------VVYSKTASLRGETEADAEHVQQVCGLCNDLAD 477 (723)
Q Consensus 422 ~~~~----~~~~~~~l~~lr~~~~~p~l--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (723)
.... ...++.+. ..+.... +.. ...-.+.... .+-.-.+.....|.. +..
T Consensus 245 ~~~~~~~~~kdl~~~~-~~~~~~a-~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~-~~~~Yl~~l~e~~~~-~~s-- 318 (542)
T COG1111 245 IESSSPVSKKDLLELR-QIRLIMA-KNEDSDKFRLLSVLAEAIKLAHALELLETQGIR-PFYQYLEKLEEEATK-GGS-- 318 (542)
T ss_pred eeccCcccHhHHHHHH-HHHHHhc-cCccHHHHHHHHHHHHHHHHHHHHHHHHhhChH-HHHHHHHHHHHHhcc-cch--
Confidence 2111 11222222 1111100 000 0000000000 000000000000000 000
Q ss_pred CCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcccccccccCCCCCCccccccCCccc-cchhhccccccCcchHHHH
Q 004925 478 DPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSS-SILNRIQLDEFQSSTKIEA 556 (723)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~Kl~~ 556 (723)
......-....+... ..+.. .......+|||..
T Consensus 319 ---------------------------------------------k~a~~l~~d~~~~~al~~~~~-~~~~~v~HPKl~~ 352 (542)
T COG1111 319 ---------------------------------------------KAAKSLLADPYFKRALRLLIR-ADESGVEHPKLEK 352 (542)
T ss_pred ---------------------------------------------HHHHHHhcChhhHHHHHHHHH-hccccCCCccHHH
Confidence 000000000000000 00001 1233456899999
Q ss_pred HHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEE-Eeec--------CCCHHHHHHHHHhhcCCCCceEEEE
Q 004925 557 LREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCV-QLVG--------SMSIPARDAAINRFTEDPDCKIFLM 627 (723)
Q Consensus 557 l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~-~i~g--------~~~~~~r~~~i~~F~~~~~~~vll~ 627 (723)
+.++|.+.+++.++.++|||++|+++++.|.++|.+.|..+. .|-| +|++.++..+|++|+.+ .++||+
T Consensus 353 l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~G-e~nVLV- 430 (542)
T COG1111 353 LREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKG-EYNVLV- 430 (542)
T ss_pred HHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcC-CceEEE-
Confidence 999999999889999999999999999999999999988874 5544 68999999999999986 888766
Q ss_pred ecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHhhccc
Q 004925 628 SLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTV 702 (723)
Q Consensus 628 s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~~~~~~ 702 (723)
+|.+|.||||++.++.||||||.=++.+.+||.||.+|. +.-.||.|+++||-|+.-+....+|.+.+...+
T Consensus 431 aTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdeayy~~s~rke~~m~e~i 502 (542)
T COG1111 431 ATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEAYYYSSRRKEQKMIESI 502 (542)
T ss_pred EcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC---CCCeEEEEEecCchHHHHHHHHHHHHHHHHHHH
Confidence 559999999999999999999999999999999999984 556777799999999999999888865555444
No 21
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=2.5e-38 Score=330.66 Aligned_cols=289 Identities=37% Similarity=0.631 Sum_probs=216.5
Q ss_pred HHHHHHHHHHHhc--------cCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec
Q 004925 33 YQKEWLAWALKQE--------ESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP 104 (723)
Q Consensus 33 ~Q~~~~~~~~~~~--------~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P 104 (723)
||+.++.||+.++ ....+||||||+||+|||+++++++..+....... ..+++|||||
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~--------------~~~~~LIv~P 66 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQR--------------GEKKTLIVVP 66 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTS--------------S-S-EEEEE-
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccc--------------cccceeEeec
Confidence 8999999999998 45559999999999999999999998544433221 1146999999
Q ss_pred hhhHHHHHHHHHhhcCCCCcEEEEEeCCC--CCCCccccCCCCEEEechhhhHHhhhhccCCCcccccccCccchhhhhh
Q 004925 105 VAAVTQWVSEINRFTSVGSTKVLIYHGSN--RERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLV 182 (723)
Q Consensus 105 ~~l~~qW~~ei~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (723)
.+++.||..|+.+|+++...+++++.|.. ..........++++|+||+.+......
T Consensus 67 ~~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~---------------------- 124 (299)
T PF00176_consen 67 SSLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKK---------------------- 124 (299)
T ss_dssp TTTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TST----------------------
T ss_pred cchhhhhhhhhccccccccccccccccccccccccccccccceeeecccccccccccc----------------------
Confidence 99999999999999976578999999877 333444567899999999999711000
Q ss_pred hhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccccccCCCcHH
Q 004925 183 VHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNT 262 (723)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~ 262 (723)
.....+...+|++||+||+|.++|..+..
T Consensus 125 ---------------------------------------------------~~~~~l~~~~~~~vIvDEaH~~k~~~s~~ 153 (299)
T PF00176_consen 125 ---------------------------------------------------KDKEDLKQIKWDRVIVDEAHRLKNKDSKR 153 (299)
T ss_dssp ---------------------------------------------------HTTHHHHTSEEEEEEETTGGGGTTTTSHH
T ss_pred ---------------------------------------------------ccccccccccceeEEEecccccccccccc
Confidence 00123556789999999999999999999
Q ss_pred HHHHHhhhcCceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCcccccCCCCCCCCCCCCCCccchhhhhhhcccc
Q 004925 263 AKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATP 342 (723)
Q Consensus 263 ~~~l~~l~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (723)
++++..+.++++|+|||||+.|++.|+++++++|+++.+.. ...|.+.+..+
T Consensus 154 ~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~----------------------------~~~f~~~~~~~ 205 (299)
T PF00176_consen 154 YKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSD----------------------------RRSFKKWFYRP 205 (299)
T ss_dssp HHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSS----------------------------HHHHHHHTHHH
T ss_pred cccccccccceEEeeccccccccccccccchheeecccccc----------------------------chhhhhhhhhh
Confidence 99999999999999999999999999999999999877642 34455544332
Q ss_pred ccccCCCcchhHHHHHHHHHHhHhHhhhhccCCcccccCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 004925 343 IQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTV 422 (723)
Q Consensus 343 ~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~~~lp~~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 422 (723)
...........+..+++.+++|+++.++... +|+..+.++.++|+++|+..|+.+............ ...
T Consensus 206 ------~~~~~~~~~~~L~~~l~~~~~r~~~~d~~~~--lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~--~~~ 275 (299)
T PF00176_consen 206 ------DKENSYENIERLRELLSEFMIRRTKKDVEKE--LPPKIEHVINVELSPEQRELYNELLKEARENLKQSS--RKK 275 (299)
T ss_dssp ------HHTHHHHHHHHHHHHHCCCEECHCGGGGCTT--STCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T----T
T ss_pred ------ccccccccccccccccchhhhhhhccccccc--CCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhc--ccc
Confidence 1122344456678889999999999988444 999999999999999999999988777665543322 234
Q ss_pred cccHHHHHHHHHHHHhhccCcccc
Q 004925 423 MNNYAHIFDLLTRLRQAVDHPYLV 446 (723)
Q Consensus 423 ~~~~~~~~~~l~~lr~~~~~p~l~ 446 (723)
......++..+.++|++|+||+++
T Consensus 276 ~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 276 SKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp CHHHHHHHHHHHHHHHHHH-THHC
T ss_pred hhhHHHHHHHHHHHHHHhCCcccC
Confidence 556778999999999999999864
No 22
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=4.7e-38 Score=348.77 Aligned_cols=301 Identities=28% Similarity=0.409 Sum_probs=219.0
Q ss_pred CcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhhHHHHHHHHHhhcCCCCcEEEEEeC
Q 004925 52 GILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHG 131 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~~qW~~ei~~~~~~~~~~~~~~~g 131 (723)
++++|+||+|||...+++....+. ......++.-..........|+||||||++++.||..||.+++.. .+++..|.|
T Consensus 377 ~~~ade~~~qk~~~~l~~~l~~~~-k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~-~lKv~~Y~G 454 (1394)
T KOG0298|consen 377 VQCADEMGWQKTSEKLILELSDLP-KLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISS-LLKVLLYFG 454 (1394)
T ss_pred eeehhhhhccchHHHHHHHHhccc-ccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccc-cceEEEEec
Confidence 499999999999998877765422 111122222223333444569999999999999999999999985 479999999
Q ss_pred CCCCC--CccccCCCCEEEechhhhHHhhhhccCCCcccccccCccchhhhhhhhhhhccCCcchhhhhhhHHHHhhhcc
Q 004925 132 SNRER--SAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKS 209 (723)
Q Consensus 132 ~~~~~--~~~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (723)
..+.. .+..+-.||||+|||++++..+.+-
T Consensus 455 irk~~~~~~~el~~yDIVlTtYdiLr~El~ht------------------------------------------------ 486 (1394)
T KOG0298|consen 455 IRKTFWLSPFELLQYDIVLTTYDILRNELYHT------------------------------------------------ 486 (1394)
T ss_pred hhhhcccCchhhhccCEEEeehHHHHhHhhcc------------------------------------------------
Confidence 66543 3355788999999999999987641
Q ss_pred ccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccccccCCCcHHHHHHHhhhcCceEEEeCcCCCCchhhH
Q 004925 210 SVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGEL 289 (723)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~l~~l~~~~~l~LTaTP~~n~~~dl 289 (723)
...+..-......++....++|.+..|-+|++|||+-+...+|..++++..+.+.++|.+||||+++ +.++
T Consensus 487 --------e~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl 557 (1394)
T KOG0298|consen 487 --------EDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDL 557 (1394)
T ss_pred --------cccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhh
Confidence 1122222333334455556789999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHhccCcCCcccccCCcccccCCCCCCCCCCCCCCccchhhhhhhccccccccCCCcchhHHHHHHHHHHhHhHhh
Q 004925 290 YSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRAMILLKHKVLRSVIL 369 (723)
Q Consensus 290 ~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 369 (723)
++++.+|+..||... .+|-..+..+++.. +.......++...+-
T Consensus 558 ~~Ll~fLk~~Pf~~~----------------------------~~~iq~v~~~~~~r--------a~~~~~~dl~~q~l~ 601 (1394)
T KOG0298|consen 558 FPLLEFLKLPPFCRP----------------------------QDFIQTVDKAYQLR--------AKCEPLLDLFKQLLW 601 (1394)
T ss_pred HHHHHHhcCCCCCCh----------------------------HHHHHHHHHHHHHH--------hhhhhHHHHHHhhhh
Confidence 999999998887543 34555555544322 223344677888889
Q ss_pred hhccCCcccccCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHh----c---------cccccHHHHHHHHHHH
Q 004925 370 RRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQA----G---------TVMNNYAHIFDLLTRL 436 (723)
Q Consensus 370 rr~~~~~~~~~~lp~~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~----~---------~~~~~~~~~~~~l~~l 436 (723)
|+.+..+..++.+|+.........+++.+..+|+...-.....+...... . ........+...+.++
T Consensus 602 R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~i~~~l~rL 681 (1394)
T KOG0298|consen 602 RTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAIILKWLLRL 681 (1394)
T ss_pred hhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHHHHHHHHHH
Confidence 99999999999899987777777888777666655444333333222211 1 1112335678999999
Q ss_pred HhhccCccccc
Q 004925 437 RQAVDHPYLVV 447 (723)
Q Consensus 437 r~~~~~p~l~~ 447 (723)
|++|.||....
T Consensus 682 Rq~Cchplv~~ 692 (1394)
T KOG0298|consen 682 RQACCHPLVGN 692 (1394)
T ss_pred HHhhccccccc
Confidence 99999987443
No 23
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.2e-34 Score=339.69 Aligned_cols=145 Identities=21% Similarity=0.318 Sum_probs=129.4
Q ss_pred CcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecC--------CCHHHHHHHHHhhcCCC
Q 004925 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGS--------MSIPARDAAINRFTEDP 620 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~--------~~~~~r~~~i~~F~~~~ 620 (723)
..+||+..|.++|.+.+...++.|+||||++.+++..|.++|...|+++..++|. +++.+|..++.+|.++
T Consensus 344 ~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g- 422 (773)
T PRK13766 344 IEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAG- 422 (773)
T ss_pred cCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcC-
Confidence 3479999999999998766788999999999999999999999999999999987 8889999999999986
Q ss_pred CceEEEEecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHh
Q 004925 621 DCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVF 698 (723)
Q Consensus 621 ~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~~ 698 (723)
...+|+ +|.++++|+|++.+++||+|||+||+..++|++||++|.|+ ..+|.|++++|.||.++....+|...+
T Consensus 423 ~~~vLv-aT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 423 EFNVLV-STSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred CCCEEE-ECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 677655 55899999999999999999999999999999999998775 678889999999999988776666555
No 24
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=3.6e-34 Score=310.83 Aligned_cols=398 Identities=26% Similarity=0.393 Sum_probs=298.4
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhh
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 107 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l 107 (723)
..|-|||.+|+.|+...+..+ ..+||||+||+|||++++.+.......... .+|.|+++|.+.
T Consensus 294 g~L~~~qleGln~L~~~ws~~-~~~ilADEmgLgktVqsi~fl~sl~~~~~~----------------~~P~Lv~ap~sT 356 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPG-VDAILADEMGLGKTVQSIVFLYSLPKEIHS----------------PGPPLVVAPLST 356 (696)
T ss_pred ccccccchhhhhhhhcccccC-CCcccchhhcCCceeeEEEEEeecccccCC----------------CCCceeeccCcc
Confidence 588999999999999888888 889999999999999998888776655442 269999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccccCC---CC-EEEechhhhHHhhhhccCCCcccccccCccchhhhhhh
Q 004925 108 VTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSE---FD-FVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVV 183 (723)
Q Consensus 108 ~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~-ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (723)
+-+|..|+..|.+ .+.+..+.|..+.+..-.... -+ -+..+..+.+..--
T Consensus 357 ~~nwe~e~~~wap--~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~------------------------ 410 (696)
T KOG0383|consen 357 IVNWEREFELWAP--SFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTE------------------------ 410 (696)
T ss_pred ccCCCCchhccCC--CcccccCCCCccchhhhhcccccccccccccCCccccccch------------------------
Confidence 9999999999998 788888888776553211100 00 00000000000000
Q ss_pred hhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccccccCCCcHHH
Q 004925 184 HLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTA 263 (723)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~ 263 (723)
++ ..............-+...+.+++|..+|+||+|+++|..+.+.
T Consensus 411 -------------------------s~---------~k~~vl~~s~~~~~~~~~il~~v~w~~livde~~rlkn~~s~~f 456 (696)
T KOG0383|consen 411 -------------------------SS---------AKFHVLLPSYETIEIDQSILFSVQWGLLIVDEAHRLKNKQSKRF 456 (696)
T ss_pred -------------------------hh---------cccccCCCchhhcccCHHHHhhhhcceeEeechhhcccchhhhh
Confidence 00 00000000111111223457889999999999999999999999
Q ss_pred HHHHhhhcCceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCcccccCCCCCCCCCCCCCCccchhhhhhhccccc
Q 004925 264 KAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPI 343 (723)
Q Consensus 264 ~~l~~l~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (723)
+.+......++++|||||.+|.+.+++++|++|.+..|.+. ++|...+.+.
T Consensus 457 ~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~----------------------------~~f~e~~~d~- 507 (696)
T KOG0383|consen 457 RVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSL----------------------------EWFLEEFHDI- 507 (696)
T ss_pred hhccccccchhhhccCCcchhhhHHhhhcccccCcccccch----------------------------hhhhhhcchh-
Confidence 99999999999999999999999999999999997776543 3333333221
Q ss_pred cccCCCcchhHHHHHHHHHHhHhHhhhhccCCcccccCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 004925 344 QTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTVM 423 (723)
Q Consensus 344 ~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~~~lp~~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 423 (723)
........++.++.+.|+||.+.+++.. .|.+.+..+.+.|++-|+.+|+.+.......+.. .
T Consensus 508 --------~~~~~~~~l~~l~~p~~lrr~k~d~l~~--~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~-------~ 570 (696)
T KOG0383|consen 508 --------SCEEQIKKLHLLLCPHMLRRLKLDVLKP--MPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA-------G 570 (696)
T ss_pred --------hHHHHHHhhccccCchhhhhhhhhhccC--CCccceeEEEEecCHHHHHHHHHHHcCChHHHhh-------c
Confidence 1234455668899999999999999987 8999999999999999999999999887777654 2
Q ss_pred ccHHHHHHHHHHHHhhccCcccccccccccccCCCccccccccccccccccCCCCCcccccCCccchhhhhhhhcCcCCC
Q 004925 424 NNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVA 503 (723)
Q Consensus 424 ~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (723)
...-.++.+++.+|++|+|||+......... ...
T Consensus 571 ~~~~s~~n~~mel~K~~~hpy~~~~~e~~~~--~~~-------------------------------------------- 604 (696)
T KOG0383|consen 571 VHQYSLLNIVMELRKQCNHPYLSPLEEPLEE--NGE-------------------------------------------- 604 (696)
T ss_pred chhHHHHHHHHHHHHhhcCcccCcccccccc--chH--------------------------------------------
Confidence 2333567899999999999999865111000 000
Q ss_pred CCCCCCCCcccccccccCCCCCCccccccCCccccchhhccccccCcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHH
Q 004925 504 KCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFL 583 (723)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~ 583 (723)
.........+.|+.-|...+..+ +..++||+||+++...+
T Consensus 605 --------------------------------------~~~~~l~k~~~k~~~l~~~~~~l--~~~ghrvl~~~q~~~~l 644 (696)
T KOG0383|consen 605 --------------------------------------YLGSALIKASGKLTLLLKMLKKL--KSSGHRVLIFSQMIHML 644 (696)
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHHHHHH--HhcchhhHHHHHHHHHH
Confidence 00001123467888888888887 56889999999999999
Q ss_pred HHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcC-CCCceEEEEecCCCccc
Q 004925 584 DLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE-DPDCKIFLMSLKAGGVA 635 (723)
Q Consensus 584 ~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~-~~~~~vll~s~~~~~eG 635 (723)
+.|++++...+ .+.+++|..+..+|+..+.+|+. ++.-.+++++|++||.|
T Consensus 645 dlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 645 DLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 99999999999 99999999999999999999996 55677899999999876
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.98 E-value=2.1e-30 Score=280.49 Aligned_cols=370 Identities=19% Similarity=0.231 Sum_probs=269.2
Q ss_pred CCCccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEe
Q 004925 24 PDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVIC 103 (723)
Q Consensus 24 ~~~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~ 103 (723)
..+...|+|||.+++..+...... .+.+++..++|+|||++++.++..... .+||||
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~-~~~gvivlpTGaGKT~va~~~~~~~~~----------------------~~Lvlv 87 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRT-ERRGVIVLPTGAGKTVVAAEAIAELKR----------------------STLVLV 87 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhccc-CCceEEEeCCCCCHHHHHHHHHHHhcC----------------------CEEEEE
Confidence 456668999999999988886665 488999999999999999999887643 589999
Q ss_pred c-hhhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccccCCCCEEEechhhhHHhhhhccCCCcccccccCccchhhhhh
Q 004925 104 P-VAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLV 182 (723)
Q Consensus 104 P-~~l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (723)
| ..|+.||.+.+.+++... ..+..+.|..+.... ..|+++|++++.....
T Consensus 88 ~~~~L~~Qw~~~~~~~~~~~-~~~g~~~~~~~~~~~-----~~i~vat~qtl~~~~~----------------------- 138 (442)
T COG1061 88 PTKELLDQWAEALKKFLLLN-DEIGIYGGGEKELEP-----AKVTVATVQTLARRQL----------------------- 138 (442)
T ss_pred CcHHHHHHHHHHHHHhcCCc-cccceecCceeccCC-----CcEEEEEhHHHhhhhh-----------------------
Confidence 9 578999999998888632 245556665544332 5799999999976410
Q ss_pred hhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccccccCCCcHH
Q 004925 183 VHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNT 262 (723)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~ 262 (723)
...+....|++||+||||++..+. .
T Consensus 139 -----------------------------------------------------l~~~~~~~~~liI~DE~Hh~~a~~--~ 163 (442)
T COG1061 139 -----------------------------------------------------LDEFLGNEFGLIIFDEVHHLPAPS--Y 163 (442)
T ss_pred -----------------------------------------------------hhhhcccccCEEEEEccccCCcHH--H
Confidence 012344479999999999997663 2
Q ss_pred HHHHHhhhcCc-eEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCcccccCCCCCCCCCCCCCCccchhhhhhhccc
Q 004925 263 AKAVLALESSY-KWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVAT 341 (723)
Q Consensus 263 ~~~l~~l~~~~-~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (723)
.+.+..+.+.+ +++|||||...+...+..+..++++-.+
T Consensus 164 ~~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy---------------------------------------- 203 (442)
T COG1061 164 RRILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVY---------------------------------------- 203 (442)
T ss_pred HHHHHhhhcccceeeeccCceeecCCchhHHHHhcCCeEe----------------------------------------
Confidence 23444455666 9999999986665566666666552222
Q ss_pred cccccCCCcchhHHHHHHHHHHhHhHhhhhccCCcccccCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004925 342 PIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGT 421 (723)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~~~lp~~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~ 421 (723)
.....+...+..+.+.....+.+.++..+...|................
T Consensus 204 ----------------------------~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~--- 252 (442)
T COG1061 204 ----------------------------EVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT--- 252 (442)
T ss_pred ----------------------------ecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh---
Confidence 1111111222337888888888889998888887666554433221111
Q ss_pred ccccHHHHHHHHHHHHhhccCcccccccccccccCCCccccccccccccccccCCCCCcccccCCccchhhhhhhhcCcC
Q 004925 422 VMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKF 501 (723)
Q Consensus 422 ~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (723)
.......+..
T Consensus 253 --------~~~~~~~~~~-------------------------------------------------------------- 262 (442)
T COG1061 253 --------LRAENEARRI-------------------------------------------------------------- 262 (442)
T ss_pred --------hhHHHHHHHH--------------------------------------------------------------
Confidence 0000000000
Q ss_pred CCCCCCCCCCcccccccccCCCCCCccccccCCccccchhhccccccCcchHHHHHHHHHHHHHhhcCCceEEEEcccHh
Q 004925 502 VAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTS 581 (723)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~ 581 (723)
......|+..+..++..+. .+.+++||+.+..
T Consensus 263 ---------------------------------------------~~~~~~~~~~~~~~~~~~~---~~~~~lif~~~~~ 294 (442)
T COG1061 263 ---------------------------------------------AIASERKIAAVRGLLLKHA---RGDKTLIFASDVE 294 (442)
T ss_pred ---------------------------------------------hhccHHHHHHHHHHHHHhc---CCCcEEEEeccHH
Confidence 0122457777777776552 5679999999999
Q ss_pred HHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEECCCCChhhHHHHHH
Q 004925 582 FLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQD 661 (723)
Q Consensus 582 ~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iG 661 (723)
.+..+...|...|+ +..++|.++..+|.+++++|..++ .. +|++++++.||+|++.++.+|+..|+-++..+.|++|
T Consensus 295 ~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~-~~-~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lG 371 (442)
T COG1061 295 HAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG-IK-VLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLG 371 (442)
T ss_pred HHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC-CC-EEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhh
Confidence 99999999999988 899999999999999999999874 55 5667799999999999999999999999999999999
Q ss_pred hhhhc-CCccc--EEEEEEEeCCCHHHHHHHHHH
Q 004925 662 RIHRI-GQYKP--IRIVRFLIENTIEERILKLQE 692 (723)
Q Consensus 662 Ri~R~-Gq~~~--V~v~~l~~~~t~ee~~~~~~~ 692 (723)
|+.|. ..+.. +..|-++..++.+..+.....
T Consensus 372 R~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (442)
T COG1061 372 RGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRR 405 (442)
T ss_pred hhccCCCCCCceEEEEEEeecCcccccchhhhhh
Confidence 99994 43443 777777788887777665444
No 26
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.98 E-value=4.2e-30 Score=284.04 Aligned_cols=127 Identities=11% Similarity=0.060 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 632 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~ 632 (723)
|...+.+++..+. ..+.+++||+.....++.|.+.|+..|+++..++|+++.++|..+++.|+++ ...|||+|.+.+
T Consensus 329 Rn~~I~~~~~~~~--~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~-~~~vLvaT~~~l 405 (501)
T PHA02558 329 RNKWIANLALKLA--KKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGG-KGIIIVASYGVF 405 (501)
T ss_pred HHHHHHHHHHHHH--hcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCC-CCeEEEEEccee
Confidence 5555566665553 3456889999999999999999999999999999999999999999999864 677888888999
Q ss_pred cccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcc-cEEEEEEEeCCC
Q 004925 633 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYK-PIRIVRFLIENT 682 (723)
Q Consensus 633 ~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~-~V~v~~l~~~~t 682 (723)
+||+|++.+++||++.|+.+...+.|++||+.|.+..+ .+.||.++-.-.
T Consensus 406 ~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~ 456 (501)
T PHA02558 406 STGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDLS 456 (501)
T ss_pred ccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeecccc
Confidence 99999999999999999999999999999999998765 489999986433
No 27
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.97 E-value=7.8e-28 Score=260.87 Aligned_cols=147 Identities=16% Similarity=0.220 Sum_probs=117.6
Q ss_pred CcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHh-C--CCeEEEeec--------CCCHHHHHHHHHhhc
Q 004925 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK-S--GVNCVQLVG--------SMSIPARDAAINRFT 617 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~-~--g~~~~~i~g--------~~~~~~r~~~i~~F~ 617 (723)
..+||++.+.+.|.+.....+..++|||++++..+..|.++|.. + |++...+.| +|++.++..+++.|+
T Consensus 392 ~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr 471 (746)
T KOG0354|consen 392 KENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFR 471 (746)
T ss_pred ccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHh
Confidence 56899999999999999888999999999999999999999983 3 555555554 788999999999999
Q ss_pred CCCCceEEEEecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHH-HHHHHHHHH
Q 004925 618 EDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERI-LKLQEKKKL 696 (723)
Q Consensus 618 ~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~-~~~~~~K~~ 696 (723)
+| ..+||| +|.+|.||||...|+.||.||..-||..+.||.|| +| ++.-+++.|.+ + .++.- -+....|+.
T Consensus 472 ~G-~~NvLV-ATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gR---a~ns~~vll~t-~-~~~~~~E~~~~~~e~ 543 (746)
T KOG0354|consen 472 DG-EINVLV-ATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GR---ARNSKCVLLTT-G-SEVIEFERNNLAKEK 543 (746)
T ss_pred CC-CccEEE-EecchhccCCcccccEEEEecCCccHHHHHHHhcc-cc---ccCCeEEEEEc-c-hhHHHHHHHHHhHHH
Confidence 85 788666 55999999999999999999999999999999999 66 44444444455 4 44333 334555666
Q ss_pred HhhcccC
Q 004925 697 VFEGTVG 703 (723)
Q Consensus 697 ~~~~~~~ 703 (723)
+++....
T Consensus 544 lm~~~i~ 550 (746)
T KOG0354|consen 544 LMNQTIS 550 (746)
T ss_pred HHHHHHH
Confidence 6655553
No 28
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=4.4e-27 Score=237.78 Aligned_cols=353 Identities=20% Similarity=0.265 Sum_probs=254.9
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhh
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 107 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l 107 (723)
..+||||..++..|.-. ..+|.||+..++|.|||++.+..+.... +..||+|-.++
T Consensus 301 t~iRpYQEksL~KMFGN--gRARSGiIVLPCGAGKtLVGvTAa~tik----------------------K~clvLcts~V 356 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKTLVGVTAACTIK----------------------KSCLVLCTSAV 356 (776)
T ss_pred cccCchHHHHHHHHhCC--CcccCceEEEecCCCCceeeeeeeeeec----------------------ccEEEEecCcc
Confidence 36899999999999643 4458899999999999999876554432 68899999776
Q ss_pred -HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccccCCCCEEEechhhhHHhhhhccCCCcccccccCccchhhhhhhhhh
Q 004925 108 -VTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHLK 186 (723)
Q Consensus 108 -~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (723)
+.||+.++..|.......+..++.+.+++.+ .++.|+|+||+++....+. - ....+
T Consensus 357 SVeQWkqQfk~wsti~d~~i~rFTsd~Ke~~~---~~~gvvvsTYsMva~t~kR---------------S-----~eaek 413 (776)
T KOG1123|consen 357 SVEQWKQQFKQWSTIQDDQICRFTSDAKERFP---SGAGVVVTTYSMVAYTGKR---------------S-----HEAEK 413 (776)
T ss_pred CHHHHHHHHHhhcccCccceEEeeccccccCC---CCCcEEEEeeehhhhcccc---------------c-----HHHHH
Confidence 8999999999998777888888888777554 5778999999998543211 0 00000
Q ss_pred hccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccccccCCCcHHHHHH
Q 004925 187 YFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTAKAV 266 (723)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~l 266 (723)
. ...+....|+++|+||+|.+ |.....+.+
T Consensus 414 ~------------------------------------------------m~~l~~~EWGllllDEVHvv--PA~MFRRVl 443 (776)
T KOG1123|consen 414 I------------------------------------------------MDFLRGREWGLLLLDEVHVV--PAKMFRRVL 443 (776)
T ss_pred H------------------------------------------------HHHHhcCeeeeEEeehhccc--hHHHHHHHH
Confidence 0 01245567999999999999 444445555
Q ss_pred HhhhcCceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCcccccCCCCCCCCCCCCCCccchhhhhhhcccccccc
Q 004925 267 LALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTH 346 (723)
Q Consensus 267 ~~l~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (723)
.-+.++.+|+||||-+..+ +.|-.+-.+++|..+... |.++-
T Consensus 444 siv~aHcKLGLTATLvRED-dKI~DLNFLIGPKlYEAn------------------------------WmdL~------- 485 (776)
T KOG1123|consen 444 SIVQAHCKLGLTATLVRED-DKITDLNFLIGPKLYEAN------------------------------WMDLQ------- 485 (776)
T ss_pred HHHHHHhhccceeEEeecc-ccccccceeecchhhhcc------------------------------HHHHH-------
Confidence 5668999999999998764 445555666776655322 11110
Q ss_pred CCCcchhHHHHHHHHHHhHhHhhhhccCCcccccCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHhccccccH
Q 004925 347 GNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTVMNNY 426 (723)
Q Consensus 347 ~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~~~lp~~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 426 (723)
. ..-........++|+|+++.-..|-....+-
T Consensus 486 ------------------------~-------kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~k----------------- 517 (776)
T KOG1123|consen 486 ------------------------K-------KGHIAKVQCAEVWCPMTPEFYREYLRENTRK----------------- 517 (776)
T ss_pred ------------------------h-------CCceeEEeeeeeecCCCHHHHHHHHhhhhhh-----------------
Confidence 0 0014445566899999998755443211100
Q ss_pred HHHHHHHHHHHhhccCcccccccccccccCCCccccccccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCC
Q 004925 427 AHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCP 506 (723)
Q Consensus 427 ~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (723)
|.. . |
T Consensus 518 ----------r~l-L--y-------------------------------------------------------------- 522 (776)
T KOG1123|consen 518 ----------RML-L--Y-------------------------------------------------------------- 522 (776)
T ss_pred ----------hhe-e--e--------------------------------------------------------------
Confidence 000 0 0
Q ss_pred CCCCCcccccccccCCCCCCccccccCCccccchhhccccccCcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHH
Q 004925 507 TCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLI 586 (723)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l 586 (723)
.-...|..+..-+|+.+ ...+.|+|||+...-.+...
T Consensus 523 -----------------------------------------vMNP~KFraCqfLI~~H--E~RgDKiIVFsDnvfALk~Y 559 (776)
T KOG1123|consen 523 -----------------------------------------VMNPNKFRACQFLIKFH--ERRGDKIIVFSDNVFALKEY 559 (776)
T ss_pred -----------------------------------------ecCcchhHHHHHHHHHH--HhcCCeEEEEeccHHHHHHH
Confidence 01145888888889888 45788999999977666555
Q ss_pred HHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEECCCCC-hhhHHHHHHhhhh
Q 004925 587 NYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWN-PAVEQQAQDRIHR 665 (723)
Q Consensus 587 ~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn-~~~~~Q~iGRi~R 665 (723)
+--|. . -.|+|.+++.+|-++++.|+.++.++-+++| ++|...+||+.|+.+|-++.+.. -..+.||.|||.|
T Consensus 560 Aikl~---K--pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlS-KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILR 633 (776)
T KOG1123|consen 560 AIKLG---K--PFIYGPTSQNERMKILQNFQTNPKVNTIFLS-KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILR 633 (776)
T ss_pred HHHcC---C--ceEECCCchhHHHHHHHhcccCCccceEEEe-eccCccccCCcccEEEEEcccccchHHHHHHHHHHHH
Confidence 54443 2 4678999999999999999999899888877 99999999999999999998864 4677899999999
Q ss_pred cC--Ccc--cEEEEEEEeCCCHHHHH
Q 004925 666 IG--QYK--PIRIVRFLIENTIEERI 687 (723)
Q Consensus 666 ~G--q~~--~V~v~~l~~~~t~ee~~ 687 (723)
-- ... .+..|-|+.+||.|.+.
T Consensus 634 AKk~~de~fnafFYSLVS~DTqEM~Y 659 (776)
T KOG1123|consen 634 AKKRNDEEFNAFFYSLVSKDTQEMYY 659 (776)
T ss_pred HhhcCccccceeeeeeeecchHHHHh
Confidence 53 222 38999999999988754
No 29
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.94 E-value=1.6e-24 Score=237.58 Aligned_cols=116 Identities=22% Similarity=0.297 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 632 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~ 632 (723)
|...+..++. .....++|||+..+..++.|+..|...|+.+..++|+++..+|..++++|.++ .++||| +|+++
T Consensus 232 k~~~l~~l~~----~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G-~~~vLV-aTd~~ 305 (434)
T PRK11192 232 KTALLCHLLK----QPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDG-RVNVLV-ATDVA 305 (434)
T ss_pred HHHHHHHHHh----cCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCC-CCcEEE-Ecccc
Confidence 4554544443 33567999999999999999999999999999999999999999999999975 777666 55999
Q ss_pred cccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEE
Q 004925 633 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRI 674 (723)
Q Consensus 633 ~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v 674 (723)
++|||++.+++||+|++|+++..+.||+||++|.|.+..+.+
T Consensus 306 ~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 306 ARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred ccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 999999999999999999999999999999999998755444
No 30
>PTZ00110 helicase; Provisional
Probab=99.94 E-value=1.5e-24 Score=241.60 Aligned_cols=125 Identities=16% Similarity=0.162 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 004925 552 TKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 631 (723)
Q Consensus 552 ~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~ 631 (723)
.|...|.+++..+.. .+.++||||+....++.|++.|...|+++..++|++++++|..++++|.++ ...|| ++|++
T Consensus 361 ~k~~~L~~ll~~~~~--~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G-~~~IL-VaTdv 436 (545)
T PTZ00110 361 EKRGKLKMLLQRIMR--DGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTG-KSPIM-IATDV 436 (545)
T ss_pred hHHHHHHHHHHHhcc--cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcC-CCcEE-EEcch
Confidence 466777777776532 567999999999999999999999999999999999999999999999976 66655 56699
Q ss_pred CcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCC
Q 004925 632 GGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENT 682 (723)
Q Consensus 632 ~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t 682 (723)
+++|||++.+++||+||+|+++..+.||+||++|.|.+..+ |.|+..+.
T Consensus 437 ~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~a--i~~~~~~~ 485 (545)
T PTZ00110 437 ASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGAS--YTFLTPDK 485 (545)
T ss_pred hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE--EEEECcch
Confidence 99999999999999999999999999999999999987544 44566553
No 31
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.93 E-value=1.7e-24 Score=237.61 Aligned_cols=111 Identities=16% Similarity=0.194 Sum_probs=98.1
Q ss_pred hcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEE
Q 004925 567 RDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL 646 (723)
Q Consensus 567 ~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~ 646 (723)
.....++||||.....++.|+..|...|+.+..++|++++.+|..+++.|.++ ..+||| +|+++++|||++.+++||+
T Consensus 242 ~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g-~~~iLV-aTdv~~rGiDip~v~~VI~ 319 (456)
T PRK10590 242 KGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSG-DIRVLV-ATDIAARGLDIEELPHVVN 319 (456)
T ss_pred cCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcC-CCcEEE-EccHHhcCCCcccCCEEEE
Confidence 34557999999999999999999999999999999999999999999999976 777665 5599999999999999999
Q ss_pred ECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCC
Q 004925 647 MDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 681 (723)
Q Consensus 647 ~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~ 681 (723)
|++|.++..+.|++||++|.|....+.+ |+..+
T Consensus 320 ~~~P~~~~~yvqR~GRaGR~g~~G~ai~--l~~~~ 352 (456)
T PRK10590 320 YELPNVPEDYVHRIGRTGRAAATGEALS--LVCVD 352 (456)
T ss_pred eCCCCCHHHhhhhccccccCCCCeeEEE--EecHH
Confidence 9999999999999999999998754433 44443
No 32
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.93 E-value=1.8e-24 Score=254.16 Aligned_cols=121 Identities=16% Similarity=0.284 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhC------CC---eEEEeecCCCHHHHHHHHHhhcCCCCceEE
Q 004925 555 EALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS------GV---NCVQLVGSMSIPARDAAINRFTEDPDCKIF 625 (723)
Q Consensus 555 ~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~------g~---~~~~i~g~~~~~~r~~~i~~F~~~~~~~vl 625 (723)
+.+.+.|.+++....+.|.||||.....++.+.+.|.+. ++ .+..++|+++ ++..++++|.++..+. +
T Consensus 683 ~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~-I 759 (1123)
T PRK11448 683 RVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPN-I 759 (1123)
T ss_pred HHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCe-E
Confidence 344444444443334579999999999999888887653 22 4567899875 5678999998764454 5
Q ss_pred EEecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCC---cccEEEEEEE
Q 004925 626 LMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQ---YKPIRIVRFL 678 (723)
Q Consensus 626 l~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq---~~~V~v~~l~ 678 (723)
+++++.+++|+|.+.+++||++.|+-+...+.|++||+.|... |....|+.++
T Consensus 760 lVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 760 VVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred EEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 6678999999999999999999999999999999999999754 5556676655
No 33
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.93 E-value=2.5e-24 Score=237.47 Aligned_cols=121 Identities=17% Similarity=0.292 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 632 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~ 632 (723)
|+..+..++.. ..+.++||||+....++.+++.|...|+.+..++|++++.+|+.+++.|.++ ..++||+ |+++
T Consensus 229 k~~~l~~ll~~----~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g-~~~vLVa-Tdv~ 302 (460)
T PRK11776 229 RLPALQRLLLH----HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANR-SCSVLVA-TDVA 302 (460)
T ss_pred HHHHHHHHHHh----cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCcEEEE-eccc
Confidence 66666666653 3456899999999999999999999999999999999999999999999975 7776654 5999
Q ss_pred cccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCC
Q 004925 633 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 681 (723)
Q Consensus 633 ~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~ 681 (723)
++|+|++.+++||+|++|.++..+.||+||++|.|+... .|.|+..+
T Consensus 303 ~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~--ai~l~~~~ 349 (460)
T PRK11776 303 ARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGL--ALSLVAPE 349 (460)
T ss_pred ccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcce--EEEEEchh
Confidence 999999999999999999999999999999999997743 44456554
No 34
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.93 E-value=6.1e-24 Score=236.05 Aligned_cols=123 Identities=16% Similarity=0.217 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHh-CCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK-SGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 631 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~-~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~ 631 (723)
|...+.+++.... ....++|||+..+..++.|++.|.. .|+.+..++|+++.++|..+++.|.++ ..+||| +|++
T Consensus 352 k~~~l~~~l~~~~--~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G-~~~ILV-aTdv 427 (518)
T PLN00206 352 KKQKLFDILKSKQ--HFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVG-EVPVIV-ATGV 427 (518)
T ss_pred HHHHHHHHHHhhc--ccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCC-CCCEEE-EecH
Confidence 4445555554431 2235899999999999999999975 599999999999999999999999976 777665 5599
Q ss_pred CcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCC
Q 004925 632 GGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 681 (723)
Q Consensus 632 ~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~ 681 (723)
+++|||++.+++||+||+|.+...+.|++||++|.|.... .+.|+..+
T Consensus 428 l~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~--ai~f~~~~ 475 (518)
T PLN00206 428 LGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGT--AIVFVNEE 475 (518)
T ss_pred hhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeE--EEEEEchh
Confidence 9999999999999999999999999999999999997543 34456554
No 35
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.93 E-value=3.8e-24 Score=239.07 Aligned_cols=120 Identities=20% Similarity=0.302 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 632 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~ 632 (723)
|+..+..++. ...+.++||||.....++.|++.|...|+.+..++|+++..+|..+++.|.++ ..+||| +|+++
T Consensus 244 k~~~L~~ll~----~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G-~~~VLV-aTdv~ 317 (572)
T PRK04537 244 KQTLLLGLLS----RSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKG-QLEILV-ATDVA 317 (572)
T ss_pred HHHHHHHHHh----cccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcC-CCeEEE-Eehhh
Confidence 5555555554 34567999999999999999999999999999999999999999999999875 777666 55999
Q ss_pred cccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeC
Q 004925 633 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIE 680 (723)
Q Consensus 633 ~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~ 680 (723)
++|||++.+++||+||.|+++..+.|++||++|.|....+. .|++.
T Consensus 318 arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai--~~~~~ 363 (572)
T PRK04537 318 ARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI--SFACE 363 (572)
T ss_pred hcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEE--EEecH
Confidence 99999999999999999999999999999999999875443 34544
No 36
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=2.6e-24 Score=236.87 Aligned_cols=106 Identities=18% Similarity=0.192 Sum_probs=96.3
Q ss_pred cCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEE
Q 004925 568 DGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLM 647 (723)
Q Consensus 568 ~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~ 647 (723)
.++.++||||..+..++.++..|...|+.+..++|+++.++|..++++|.++ .++||+ +|.++++|||++.+++||++
T Consensus 224 ~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g-~~~vLV-aT~~~~~GID~p~V~~VI~~ 301 (470)
T TIGR00614 224 FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRD-EIQVVV-ATVAFGMGINKPDVRFVIHY 301 (470)
T ss_pred cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcC-CCcEEE-EechhhccCCcccceEEEEe
Confidence 3556779999999999999999999999999999999999999999999965 778765 55899999999999999999
Q ss_pred CCCCChhhHHHHHHhhhhcCCcccEEEE
Q 004925 648 DPWWNPAVEQQAQDRIHRIGQYKPIRIV 675 (723)
Q Consensus 648 d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~ 675 (723)
++|.++..+.|++||++|.|+.....++
T Consensus 302 ~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 302 SLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred CCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 9999999999999999999988665543
No 37
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.93 E-value=1.6e-24 Score=236.27 Aligned_cols=122 Identities=20% Similarity=0.204 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 004925 552 TKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 631 (723)
Q Consensus 552 ~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~ 631 (723)
.|+..+..++.. ....++|||++....++.+...|...|+++..++|++++++|..++++|.++ .++||| +|++
T Consensus 241 ~k~~~l~~ll~~----~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g-~~~vLV-aTdv 314 (423)
T PRK04837 241 EKMRLLQTLIEE----EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRG-DLDILV-ATDV 314 (423)
T ss_pred HHHHHHHHHHHh----cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcC-CCcEEE-Eech
Confidence 366666666643 3457999999999999999999999999999999999999999999999876 778666 5599
Q ss_pred CcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCC
Q 004925 632 GGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 681 (723)
Q Consensus 632 ~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~ 681 (723)
+++|||++.+++||+||+|+++..+.|++||++|.|+... .+.|+.++
T Consensus 315 ~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~--ai~~~~~~ 362 (423)
T PRK04837 315 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGH--SISLACEE 362 (423)
T ss_pred hhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCee--EEEEeCHH
Confidence 9999999999999999999999999999999999997744 34456553
No 38
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.93 E-value=9.7e-24 Score=233.33 Aligned_cols=121 Identities=21% Similarity=0.260 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 632 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~ 632 (723)
|...+.+++. .....|+||||+.+..++.++..|...|+.+..++|+++.++|..+++.|.++ ..++|+ +|+++
T Consensus 322 k~~~l~~ll~----~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G-~~~vLv-aT~~l 395 (475)
T PRK01297 322 KYKLLYNLVT----QNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREG-KIRVLV-ATDVA 395 (475)
T ss_pred HHHHHHHHHH----hcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCC-CCcEEE-Ecccc
Confidence 4455555543 34557999999999999999999999999999999999999999999999976 777665 56999
Q ss_pred cccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCC
Q 004925 633 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 681 (723)
Q Consensus 633 ~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~ 681 (723)
++|||++.+++||++++|++...+.|++||++|.|+...+ +.|+..+
T Consensus 396 ~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~--i~~~~~~ 442 (475)
T PRK01297 396 GRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVS--ISFAGED 442 (475)
T ss_pred ccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceE--EEEecHH
Confidence 9999999999999999999999999999999999986443 3345443
No 39
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.92 E-value=1e-22 Score=228.69 Aligned_cols=115 Identities=19% Similarity=0.217 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 004925 552 TKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 631 (723)
Q Consensus 552 ~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~ 631 (723)
.|..++..+|.. ....++||||.....+..|+..|...|+.+..++|.+++.+|..++++|.++ ...|| ++|++
T Consensus 231 ~k~~~L~~~L~~----~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G-~~~IL-VATdv 304 (629)
T PRK11634 231 RKNEALVRFLEA----EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG-RLDIL-IATDV 304 (629)
T ss_pred hHHHHHHHHHHh----cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCC-CCCEE-EEcch
Confidence 466777777653 3456899999999999999999999999999999999999999999999975 67755 56699
Q ss_pred CcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccE
Q 004925 632 GGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPI 672 (723)
Q Consensus 632 ~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V 672 (723)
+++|||++.+++||+||+|.++..+.|++||++|.|..-..
T Consensus 305 ~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~a 345 (629)
T PRK11634 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRA 345 (629)
T ss_pred HhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceE
Confidence 99999999999999999999999999999999999976543
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.92 E-value=4.1e-23 Score=233.28 Aligned_cols=103 Identities=18% Similarity=0.193 Sum_probs=94.5
Q ss_pred cCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEE
Q 004925 568 DGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLM 647 (723)
Q Consensus 568 ~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~ 647 (723)
..+.++||||..+..++.++..|...|+.+..++|+++.++|..+++.|..+ ..+||+ +|.++++|||++.+++||+|
T Consensus 234 ~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g-~~~VLV-aT~a~~~GIDip~V~~VI~~ 311 (607)
T PRK11057 234 QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRD-DLQIVV-ATVAFGMGINKPNVRFVVHF 311 (607)
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCC-CCCEEE-EechhhccCCCCCcCEEEEe
Confidence 4567999999999999999999999999999999999999999999999876 677665 55899999999999999999
Q ss_pred CCCCChhhHHHHHHhhhhcCCcccE
Q 004925 648 DPWWNPAVEQQAQDRIHRIGQYKPI 672 (723)
Q Consensus 648 d~~wn~~~~~Q~iGRi~R~Gq~~~V 672 (723)
++|.+...+.|++||++|.|....+
T Consensus 312 d~P~s~~~y~Qr~GRaGR~G~~~~~ 336 (607)
T PRK11057 312 DIPRNIESYYQETGRAGRDGLPAEA 336 (607)
T ss_pred CCCCCHHHHHHHhhhccCCCCCceE
Confidence 9999999999999999999976543
No 41
>PTZ00424 helicase 45; Provisional
Probab=99.92 E-value=5.3e-23 Score=223.86 Aligned_cols=112 Identities=16% Similarity=0.256 Sum_probs=98.0
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEEC
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMD 648 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d 648 (723)
...++||||..+..++.+.+.|...++.+..++|+++.++|..+++.|+++ ..+||+ +|+++++|+|++.+++||+++
T Consensus 266 ~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g-~~~vLv-aT~~l~~GiDip~v~~VI~~~ 343 (401)
T PTZ00424 266 TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSG-STRVLI-TTDLLARGIDVQQVSLVINYD 343 (401)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCCEEE-EcccccCCcCcccCCEEEEEC
Confidence 456899999999999999999999999999999999999999999999975 677655 559999999999999999999
Q ss_pred CCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHH
Q 004925 649 PWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIE 684 (723)
Q Consensus 649 ~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~e 684 (723)
+|.+...+.|++||++|.|..- ..+.|+..+..+
T Consensus 344 ~p~s~~~y~qr~GRagR~g~~G--~~i~l~~~~~~~ 377 (401)
T PTZ00424 344 LPASPENYIHRIGRSGRFGRKG--VAINFVTPDDIE 377 (401)
T ss_pred CCCCHHHEeecccccccCCCCc--eEEEEEcHHHHH
Confidence 9999999999999999998653 344466555433
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.91 E-value=7.3e-23 Score=232.13 Aligned_cols=115 Identities=18% Similarity=0.189 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 632 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~ 632 (723)
+...+.+.+.. ..+.++||||..+..++.++..|...|+++..+||+++.++|..+++.|..+ .++||+ +|.++
T Consensus 211 ~~~~l~~~l~~----~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g-~~~vlV-aT~a~ 284 (591)
T TIGR01389 211 KQKFLLDYLKK----HRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYD-DVKVMV-ATNAF 284 (591)
T ss_pred HHHHHHHHHHh----cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcC-CCcEEE-Eechh
Confidence 33444455543 3467899999999999999999999999999999999999999999999876 677655 55999
Q ss_pred cccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEE
Q 004925 633 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIR 673 (723)
Q Consensus 633 ~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~ 673 (723)
++|||++.+++||++++|.+...+.|++||++|.|+...+.
T Consensus 285 ~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 285 GMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred hccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEE
Confidence 99999999999999999999999999999999999765543
No 43
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.90 E-value=7.9e-22 Score=223.83 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=81.8
Q ss_pred CceEEEEcccH--------hHHHHHHHHHHh--CCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCccccccc
Q 004925 570 SAKGIVFSQFT--------SFLDLINYSLHK--SGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLT 639 (723)
Q Consensus 570 ~~KvIIF~~~~--------~~~~~l~~~L~~--~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~ 639 (723)
+.+++|||... ..+..+.+.|.. .++.+..++|+|+.++|..++++|.++ ..+||| +|.+.++|+|++
T Consensus 448 g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g-~~~ILV-aT~vie~GvDiP 525 (630)
T TIGR00643 448 GRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREG-EVDILV-ATTVIEVGVDVP 525 (630)
T ss_pred CCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCCEEE-ECceeecCcccC
Confidence 35667776543 234455556654 378899999999999999999999975 677655 568999999999
Q ss_pred ccCEEEEECCC-CChhhHHHHHHhhhhcCCcccEEE
Q 004925 640 VASHVFLMDPW-WNPAVEQQAQDRIHRIGQYKPIRI 674 (723)
Q Consensus 640 ~a~~vI~~d~~-wn~~~~~Q~iGRi~R~Gq~~~V~v 674 (723)
.++.||+++++ ++...+.|++||++|.|.+-.+.+
T Consensus 526 ~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il 561 (630)
T TIGR00643 526 NATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLL 561 (630)
T ss_pred CCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEE
Confidence 99999999998 478899999999999987644443
No 44
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.90 E-value=3.1e-22 Score=227.50 Aligned_cols=105 Identities=18% Similarity=0.116 Sum_probs=95.9
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEEC
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMD 648 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d 648 (723)
.++..||||..+...+.++..|...|+++..++|+|+.++|..++++|..+ .++||+ +|.+++.|||++.+++||+|+
T Consensus 679 ~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~G-ei~VLV-ATdAFGMGIDkPDVR~VIHyd 756 (1195)
T PLN03137 679 FDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKD-EINIIC-ATVAFGMGINKPDVRFVIHHS 756 (1195)
T ss_pred cCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcC-CCcEEE-EechhhcCCCccCCcEEEEcC
Confidence 356789999999999999999999999999999999999999999999986 777665 559999999999999999999
Q ss_pred CCCChhhHHHHHHhhhhcCCcccEEEE
Q 004925 649 PWWNPAVEQQAQDRIHRIGQYKPIRIV 675 (723)
Q Consensus 649 ~~wn~~~~~Q~iGRi~R~Gq~~~V~v~ 675 (723)
+|.+...+.|++||++|.|+.-.+.+|
T Consensus 757 lPkSiEsYyQriGRAGRDG~~g~cILl 783 (1195)
T PLN03137 757 LPKSIEGYHQECGRAGRDGQRSSCVLY 783 (1195)
T ss_pred CCCCHHHHHhhhcccCCCCCCceEEEE
Confidence 999999999999999999988665554
No 45
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.89 E-value=1.2e-21 Score=223.79 Aligned_cols=103 Identities=15% Similarity=0.139 Sum_probs=83.3
Q ss_pred CCceEEEEcccHh--------HHHHHHHHHHhC--CCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccc
Q 004925 569 GSAKGIVFSQFTS--------FLDLINYSLHKS--GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNL 638 (723)
Q Consensus 569 ~~~KvIIF~~~~~--------~~~~l~~~L~~~--g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL 638 (723)
.+.+++|||...+ .+..+.+.|... ++++..++|+|+.++|..++++|.++ ..+||+ +|.+.++|+|+
T Consensus 470 ~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g-~~~ILV-aT~vie~GiDi 547 (681)
T PRK10917 470 KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAG-EIDILV-ATTVIEVGVDV 547 (681)
T ss_pred cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCCEEE-ECcceeeCccc
Confidence 4568888887432 345566666654 57899999999999999999999976 667655 66999999999
Q ss_pred cccCEEEEECCCC-ChhhHHHHHHhhhhcCCcccEE
Q 004925 639 TVASHVFLMDPWW-NPAVEQQAQDRIHRIGQYKPIR 673 (723)
Q Consensus 639 ~~a~~vI~~d~~w-n~~~~~Q~iGRi~R~Gq~~~V~ 673 (723)
+.++.||+++++. ....+.|++||++|.|.+..+.
T Consensus 548 p~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 583 (681)
T PRK10917 548 PNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCV 583 (681)
T ss_pred CCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEE
Confidence 9999999999984 6789999999999988764443
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.89 E-value=2.2e-21 Score=224.24 Aligned_cols=108 Identities=8% Similarity=0.076 Sum_probs=92.3
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhC--CCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEE
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKS--GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL 646 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~--g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~ 646 (723)
.+.+++||++....++.++..|++. ++++..+||+|+..+|..++.+|.++ ..+||| +|.+.++|+|++.+++||+
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~G-k~~ILV-aT~iie~GIDIp~v~~VIi 736 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKG-EFQVLV-CTTIIETGIDIPNANTIII 736 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcC-CCCEEE-ECChhhcccccccCCEEEE
Confidence 3468999999999999999999885 88999999999999999999999976 677655 5599999999999999999
Q ss_pred ECCC-CChhhHHHHHHhhhhcCCcccEEEEEEEeC
Q 004925 647 MDPW-WNPAVEQQAQDRIHRIGQYKPIRIVRFLIE 680 (723)
Q Consensus 647 ~d~~-wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~ 680 (723)
++++ +....+.|++||++|.|.+. +.|.|+..
T Consensus 737 ~~a~~~gls~l~Qr~GRvGR~g~~g--~aill~~~ 769 (926)
T TIGR00580 737 ERADKFGLAQLYQLRGRVGRSKKKA--YAYLLYPH 769 (926)
T ss_pred ecCCCCCHHHHHHHhcCCCCCCCCe--EEEEEECC
Confidence 9986 56778999999999988654 34445544
No 47
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=2e-21 Score=205.13 Aligned_cols=119 Identities=19% Similarity=0.219 Sum_probs=107.6
Q ss_pred chHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 004925 551 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 630 (723)
Q Consensus 551 s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~ 630 (723)
..|...|.++|..+. .+.+.|+||||+....++.|.+.|+..++++..|||..++.+|..+++.|.++ ++.||+ .|+
T Consensus 323 ~~K~~~l~~lL~~~~-~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG-~~~vLV-ATd 399 (519)
T KOG0331|consen 323 TAKLRKLGKLLEDIS-SDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREG-KSPVLV-ATD 399 (519)
T ss_pred HHHHHHHHHHHHHHh-ccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccC-CcceEE-Ecc
Confidence 458888889998886 45667999999999999999999999999999999999999999999999987 666555 559
Q ss_pred CCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccE
Q 004925 631 AGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPI 672 (723)
Q Consensus 631 ~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V 672 (723)
+++.|||+...++||+||+|-|...|.+|+||.+|-|++-..
T Consensus 400 VAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A 441 (519)
T KOG0331|consen 400 VAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTA 441 (519)
T ss_pred cccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceE
Confidence 999999999999999999999999999999999998877543
No 48
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.88 E-value=6.2e-21 Score=218.64 Aligned_cols=116 Identities=11% Similarity=0.055 Sum_probs=98.1
Q ss_pred CceEEEEcccHhHHHHHHHHHHhC--------CCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCccccccccc
Q 004925 570 SAKGIVFSQFTSFLDLINYSLHKS--------GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVA 641 (723)
Q Consensus 570 ~~KvIIF~~~~~~~~~l~~~L~~~--------g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a 641 (723)
+.++|||++.+..++.|...|... +.++..++|++++++|..+.++|.++ ..++| ++|++++.|||+...
T Consensus 271 ~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G-~i~vL-VaTd~lerGIDI~~v 348 (742)
T TIGR03817 271 GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDG-ELLGV-ATTNALELGVDISGL 348 (742)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcC-CceEE-EECchHhccCCcccc
Confidence 469999999999999999988763 56788999999999999999999976 77765 566999999999999
Q ss_pred CEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHH
Q 004925 642 SHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILK 689 (723)
Q Consensus 642 ~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~ 689 (723)
++||+++.|-+...+.||+||++|.|+.-. ++.++..+..|.++..
T Consensus 349 d~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 349 DAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDDPLDTYLVH 394 (742)
T ss_pred cEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCChHHHHHHh
Confidence 999999999999999999999999997643 3334444556665544
No 49
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.87 E-value=1.9e-20 Score=221.31 Aligned_cols=101 Identities=10% Similarity=0.068 Sum_probs=89.1
Q ss_pred CceEEEEcccHhHHHHHHHHHHhC--CCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEE
Q 004925 570 SAKGIVFSQFTSFLDLINYSLHKS--GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLM 647 (723)
Q Consensus 570 ~~KvIIF~~~~~~~~~l~~~L~~~--g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~ 647 (723)
+.+++||++....++.+++.|.+. ++++..++|+|++.+|..++.+|.++ ...||| +|.+++.|||++.+++||+.
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~G-k~~VLV-aTdIierGIDIP~v~~VIi~ 886 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ-RFNVLV-CTTIIETGIDIPTANTIIIE 886 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhc-CCCEEE-ECchhhcccccccCCEEEEe
Confidence 458999999999999999999887 78999999999999999999999976 777666 55999999999999999987
Q ss_pred CCC-CChhhHHHHHHhhhhcCCcccE
Q 004925 648 DPW-WNPAVEQQAQDRIHRIGQYKPI 672 (723)
Q Consensus 648 d~~-wn~~~~~Q~iGRi~R~Gq~~~V 672 (723)
++. ++...+.|++||++|.|.+..+
T Consensus 887 ~ad~fglaq~~Qr~GRvGR~g~~g~a 912 (1147)
T PRK10689 887 RADHFGLAQLHQLRGRVGRSHHQAYA 912 (1147)
T ss_pred cCCCCCHHHHHHHhhccCCCCCceEE
Confidence 765 7888999999999999877433
No 50
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=5.9e-21 Score=188.71 Aligned_cols=124 Identities=19% Similarity=0.208 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 632 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~ 632 (723)
|-.+|+.+|++. .+..+||||..-.+.+++.-.|...|+...-++|.|++..|...++.|+++ .+.||+ +|+++
T Consensus 287 K~~yLV~ll~e~----~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~-~r~iLv-~TDVa 360 (476)
T KOG0330|consen 287 KDTYLVYLLNEL----AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAG-ARSILV-CTDVA 360 (476)
T ss_pred cchhHHHHHHhh----cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhcc-CCcEEE-ecchh
Confidence 667788888865 446899999999999999999999999999999999999999999999986 666655 55999
Q ss_pred cccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHH
Q 004925 633 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIE 684 (723)
Q Consensus 633 ~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~e 684 (723)
+.|+|.+.+++||+||.|-+...|++|.||+.|.| +.-.+..|++.-.+|
T Consensus 361 SRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 361 SRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVE 410 (476)
T ss_pred cccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEehhhhH
Confidence 99999999999999999999999999999999999 445566788874444
No 51
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.87 E-value=8.9e-20 Score=195.65 Aligned_cols=122 Identities=16% Similarity=0.235 Sum_probs=89.0
Q ss_pred HHHHHHHHHhC--CCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEECCC-CChhhHHHH
Q 004925 583 LDLINYSLHKS--GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPW-WNPAVEQQA 659 (723)
Q Consensus 583 ~~~l~~~L~~~--g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~-wn~~~~~Q~ 659 (723)
+..+...|+.. ++.+..+||.|+.+++++++.+|+++ ...+| ++|-+..+|+|+++|+.+|+.++. +-.+.+.|-
T Consensus 494 a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~-e~~IL-VaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQL 571 (677)
T COG1200 494 AEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEG-EIDIL-VATTVIEVGVDVPNATVMVIENAERFGLAQLHQL 571 (677)
T ss_pred HHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcC-CCcEE-EEeeEEEecccCCCCeEEEEechhhhhHHHHHHh
Confidence 44555555533 67799999999999999999999986 67755 466999999999999999999998 889999999
Q ss_pred HHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHhhcccCCCccccCCCCHHHHH
Q 004925 660 QDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMR 718 (723)
Q Consensus 660 iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~ 718 (723)
.||++|=+..--+. |++.....+ ....+..++....+|- .|.++|++
T Consensus 572 RGRVGRG~~qSyC~---Ll~~~~~~~----~a~~RL~im~~t~DGF-----~IAE~DLk 618 (677)
T COG1200 572 RGRVGRGDLQSYCV---LLYKPPLSE----VAKQRLKIMRETTDGF-----VIAEEDLK 618 (677)
T ss_pred ccccCCCCcceEEE---EEeCCCCCh----hHHHHHHHHHhcCCcc-----eehhhhHh
Confidence 99999944332232 344433311 2335667777777763 45555554
No 52
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=2.4e-20 Score=176.48 Aligned_cols=125 Identities=14% Similarity=0.240 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 632 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~ 632 (723)
|.+.|.++-..+ .-.+.||||+....++||.+-++..++.+..++|.|++++|.+++++|+.+ ..+||| +|++-
T Consensus 253 KfdtLcdLYd~L----tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg-~SrvLi-tTDVw 326 (400)
T KOG0328|consen 253 KFDTLCDLYDTL----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSG-KSRVLI-TTDVW 326 (400)
T ss_pred hHhHHHHHhhhh----ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcC-CceEEE-Eechh
Confidence 444444444332 335889999999999999999999999999999999999999999999986 778665 66999
Q ss_pred cccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHH
Q 004925 633 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEE 685 (723)
Q Consensus 633 ~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee 685 (723)
+.|+|+|..+.||+||+|-|...+++||||.+|+|.+. ..++|+..+.++.
T Consensus 327 aRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkG--vainFVk~~d~~~ 377 (400)
T KOG0328|consen 327 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG--VAINFVKSDDLRI 377 (400)
T ss_pred hccCCcceeEEEEecCCCccHHHHhhhhccccccCCcc--eEEEEecHHHHHH
Confidence 99999999999999999999999999999999999874 3456777665543
No 53
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.1e-19 Score=200.59 Aligned_cols=134 Identities=24% Similarity=0.348 Sum_probs=112.5
Q ss_pred hHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 004925 552 TKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 631 (723)
Q Consensus 552 ~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~ 631 (723)
.|+..|..++... ...++|||+.....++.|...|...|+++..+||++++.+|...+..|.++ ..+|||++ ++
T Consensus 259 ~k~~~L~~ll~~~----~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g-~~~vLVaT-Dv 332 (513)
T COG0513 259 EKLELLLKLLKDE----DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDG-ELRVLVAT-DV 332 (513)
T ss_pred HHHHHHHHHHhcC----CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcC-CCCEEEEe-ch
Confidence 3788888887643 445899999999999999999999999999999999999999999999965 88877755 99
Q ss_pred CcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 004925 632 GGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKK 694 (723)
Q Consensus 632 ~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K 694 (723)
+++|||+...++||+||+|.++..+.+|+||.+|.|.+- ..+.|++. .-|...+..+.+.
T Consensus 333 aaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G--~ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 333 AARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKG--VAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred hhccCCccccceeEEccCCCCHHHheeccCccccCCCCC--eEEEEeCc-HHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999554 34446665 2345555544444
No 54
>PRK02362 ski2-like helicase; Provisional
Probab=99.85 E-value=1.1e-19 Score=210.74 Aligned_cols=108 Identities=15% Similarity=0.038 Sum_probs=84.8
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhC------------------------------------CCeEEEeecCCCHHHHHHH
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKS------------------------------------GVNCVQLVGSMSIPARDAA 612 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~------------------------------------g~~~~~i~g~~~~~~r~~~ 612 (723)
.+.++|||+..+.....++..|... ...++..+|+++.++|..+
T Consensus 242 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~v 321 (737)
T PRK02362 242 EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELV 321 (737)
T ss_pred cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHH
Confidence 4568899999988777666666432 1367889999999999999
Q ss_pred HHhhcCCCCceEEEEecCCCcccccccccCEEEE----EC-----CCCChhhHHHHHHhhhhcCCcccEEEEEEE
Q 004925 613 INRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL----MD-----PWWNPAVEQQAQDRIHRIGQYKPIRIVRFL 678 (723)
Q Consensus 613 i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~----~d-----~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~ 678 (723)
.+.|.++ ..+||+ +|.+++.|+|++..+.||. || .+.+...+.|++||++|.|....-.++.+.
T Consensus 322 e~~Fr~G-~i~VLv-aT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~ 394 (737)
T PRK02362 322 EDAFRDR-LIKVIS-STPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLA 394 (737)
T ss_pred HHHHHcC-CCeEEE-echhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEe
Confidence 9999976 778665 5599999999998877775 66 467889999999999999987543444344
No 55
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.85 E-value=1.3e-19 Score=212.08 Aligned_cols=104 Identities=16% Similarity=0.116 Sum_probs=89.8
Q ss_pred CceEEEEcccHhHHHHHHHHHHhC------CCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCE
Q 004925 570 SAKGIVFSQFTSFLDLINYSLHKS------GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASH 643 (723)
Q Consensus 570 ~~KvIIF~~~~~~~~~l~~~L~~~------g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~ 643 (723)
+.++||||+.+..++.++..|... +..+...+|+++.++|..+.++|+++ ..++++ +|.+++.|||++.+++
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G-~i~vLV-aTs~Le~GIDip~Vd~ 361 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRG-ELKVVV-SSTSLELGIDIGYIDL 361 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcC-CCeEEE-ECChHHhcCCCCCCcE
Confidence 468999999999999999999873 46799999999999999999999986 677655 5599999999999999
Q ss_pred EEEECCCCChhhHHHHHHhhhhcC-CcccEEEE
Q 004925 644 VFLMDPWWNPAVEQQAQDRIHRIG-QYKPIRIV 675 (723)
Q Consensus 644 vI~~d~~wn~~~~~Q~iGRi~R~G-q~~~V~v~ 675 (723)
||++++|.+...+.||+||++|.+ ....-.++
T Consensus 362 VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii 394 (876)
T PRK13767 362 VVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRII 394 (876)
T ss_pred EEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEE
Confidence 999999999999999999999864 43334443
No 56
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.84 E-value=6.9e-20 Score=198.74 Aligned_cols=167 Identities=18% Similarity=0.144 Sum_probs=124.2
Q ss_pred CCCCCCCCccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCc
Q 004925 19 TAEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKA 98 (723)
Q Consensus 19 ~~~~p~~~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (723)
....|......+|+||..++.........+-+.+||.|++|+|||.||++++..+...... ++
T Consensus 155 ~~~~~~~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~-----------------KR 217 (875)
T COG4096 155 LAYIDIDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWV-----------------KR 217 (875)
T ss_pred cccCcccccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchh-----------------he
Confidence 3344444667999999999999998888777889999999999999999999987766553 89
Q ss_pred eEEEec-hhhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccccCCCCEEEechhhhHHhhhhccCCCcccccccCccch
Q 004925 99 TLVICP-VAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFY 177 (723)
Q Consensus 99 ~LIv~P-~~l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~~~ 177 (723)
+|+++= ++|+.|-..++.++.|.+.. +....+.... ..+.|+++||+++.......-
T Consensus 218 VLFLaDR~~Lv~QA~~af~~~~P~~~~-~n~i~~~~~~------~s~~i~lsTyqt~~~~~~~~~--------------- 275 (875)
T COG4096 218 VLFLADRNALVDQAYGAFEDFLPFGTK-MNKIEDKKGD------TSSEIYLSTYQTMTGRIEQKE--------------- 275 (875)
T ss_pred eeEEechHHHHHHHHHHHHHhCCCccc-eeeeecccCC------cceeEEEeehHHHHhhhhccc---------------
Confidence 999998 78999999999999995332 2222222211 257899999999987754310
Q ss_pred hhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccccccC
Q 004925 178 QKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKD 257 (723)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~kn 257 (723)
.....+..-.||+|||||||+--
T Consensus 276 --------------------------------------------------------~~~~~f~~g~FDlIvIDEaHRgi- 298 (875)
T COG4096 276 --------------------------------------------------------DEYRRFGPGFFDLIVIDEAHRGI- 298 (875)
T ss_pred --------------------------------------------------------cccccCCCCceeEEEechhhhhH-
Confidence 11223444469999999999852
Q ss_pred CCcHHHHHHHhhhcCceEEEeCcCCC
Q 004925 258 RRSNTAKAVLALESSYKWALSGTPLQ 283 (723)
Q Consensus 258 ~~s~~~~~l~~l~~~~~l~LTaTP~~ 283 (723)
.+.++.+...-...+.+|||||-.
T Consensus 299 --~~~~~~I~dYFdA~~~gLTATP~~ 322 (875)
T COG4096 299 --YSEWSSILDYFDAATQGLTATPKE 322 (875)
T ss_pred --HhhhHHHHHHHHHHHHhhccCccc
Confidence 224446666667778888999964
No 57
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.83 E-value=3.9e-19 Score=202.16 Aligned_cols=108 Identities=17% Similarity=0.148 Sum_probs=82.2
Q ss_pred CceEEEEcccHhHHHHHHHHHHhC-----CCeEEEeecCCCHH---------------------HHHHHHHhhcCCCCce
Q 004925 570 SAKGIVFSQFTSFLDLINYSLHKS-----GVNCVQLVGSMSIP---------------------ARDAAINRFTEDPDCK 623 (723)
Q Consensus 570 ~~KvIIF~~~~~~~~~l~~~L~~~-----g~~~~~i~g~~~~~---------------------~r~~~i~~F~~~~~~~ 623 (723)
+.|.+|||..+..+..+++.|.+. +...+.++|+.+.+ ....++++|.+++.++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 479999999999999898888664 34556666665432 1247899998766777
Q ss_pred EEEEecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhc-CC-cccEEEEEEEe
Q 004925 624 IFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRI-GQ-YKPIRIVRFLI 679 (723)
Q Consensus 624 vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~-Gq-~~~V~v~~l~~ 679 (723)
++|+. +.+.+|.|.+.++.+++.-|.-+.. +.|++||+.|+ +. |....|+.++-
T Consensus 594 ilIVv-dmllTGFDaP~l~tLyldKplk~h~-LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 594 LLIVV-DMLLTGFDAPILNTLYLDKPLKYHG-LLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred EEEEE-cccccccCCCccceEEEeccccccH-HHHHHHHhccccCCCCCCEEEEECcC
Confidence 66655 9999999999999999999887665 68999999994 43 33467766653
No 58
>PRK01172 ski2-like helicase; Provisional
Probab=99.83 E-value=2e-18 Score=199.06 Aligned_cols=100 Identities=15% Similarity=0.069 Sum_probs=78.4
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhC-------------------------CCeEEEeecCCCHHHHHHHHHhhcCCCCce
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKS-------------------------GVNCVQLVGSMSIPARDAAINRFTEDPDCK 623 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~-------------------------g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~ 623 (723)
.+.++|||+..+.....++..|... ...+...+|+++.++|..+.+.|.++ ..+
T Consensus 235 ~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g-~i~ 313 (674)
T PRK01172 235 DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNR-YIK 313 (674)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcC-CCe
Confidence 3457888888888777777666542 12467889999999999999999975 777
Q ss_pred EEEEecCCCcccccccccCEEEEECC---------CCChhhHHHHHHhhhhcCCccc
Q 004925 624 IFLMSLKAGGVALNLTVASHVFLMDP---------WWNPAVEQQAQDRIHRIGQYKP 671 (723)
Q Consensus 624 vll~s~~~~~eGlnL~~a~~vI~~d~---------~wn~~~~~Q~iGRi~R~Gq~~~ 671 (723)
||+ +|.+++.|+|++. ..||+.+. +.++..+.|++||++|.|....
T Consensus 314 VLv-aT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~ 368 (674)
T PRK01172 314 VIV-ATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQY 368 (674)
T ss_pred EEE-ecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCc
Confidence 655 5599999999995 57777654 3577889999999999997654
No 59
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.82 E-value=2.9e-18 Score=183.47 Aligned_cols=121 Identities=13% Similarity=0.167 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCC--eEEEeecCCCHHHHHHH----HHhhcCCCCceEEE
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGV--NCVQLVGSMSIPARDAA----INRFTEDPDCKIFL 626 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~--~~~~i~g~~~~~~r~~~----i~~F~~~~~~~vll 626 (723)
|...+.+++... ..+.++|||++....++.+...|++.+. .+..++|+++..+|... ++.|.++ ...+|
T Consensus 208 ~~~~l~~l~~~~---~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~-~~~il- 282 (358)
T TIGR01587 208 EISSLERLLEFI---KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKN-EKFVI- 282 (358)
T ss_pred CHHHHHHHHHHh---hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCC-CCeEE-
Confidence 344444444433 2456999999999999999999998866 59999999999998764 8899874 66654
Q ss_pred EecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcc----cEEEEEEEeCC
Q 004925 627 MSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYK----PIRIVRFLIEN 681 (723)
Q Consensus 627 ~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~----~V~v~~l~~~~ 681 (723)
++|+++++|+|+. ++.+|.+..+ +..+.||+||++|.|.+. .|+|+.....+
T Consensus 283 vaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 283 VATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred EECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 5669999999995 7888887765 789999999999999764 25554443333
No 60
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.81 E-value=1.2e-18 Score=193.83 Aligned_cols=117 Identities=9% Similarity=0.021 Sum_probs=98.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEe
Q 004925 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMS 628 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s 628 (723)
....|..++++.+.+. ...+.++||||......+.+...|.+.|+++..++|.+...++..+..+|+.+ . ++++
T Consensus 405 ~~~~K~~ai~~~i~~~--~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g---~-VlIA 478 (762)
T TIGR03714 405 TLPEKLMATLEDVKEY--HETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG---A-VTVA 478 (762)
T ss_pred CHHHHHHHHHHHHHHH--hhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC---e-EEEE
Confidence 3457999999999876 34667999999999999999999999999999999999887777776666544 4 4567
Q ss_pred cCCCccccccc---------ccCEEEEECCCCChhhHHHHHHhhhhcCCcccE
Q 004925 629 LKAGGVALNLT---------VASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPI 672 (723)
Q Consensus 629 ~~~~~eGlnL~---------~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V 672 (723)
|+.+|.|+|+. ..++|+.++++-+... .|++||.+|.|.....
T Consensus 479 TdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s 530 (762)
T TIGR03714 479 TSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSS 530 (762)
T ss_pred ccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeE
Confidence 79999999999 8899999999976655 9999999999987553
No 61
>PRK00254 ski2-like helicase; Provisional
Probab=99.81 E-value=9.4e-18 Score=194.27 Aligned_cols=105 Identities=20% Similarity=0.205 Sum_probs=77.0
Q ss_pred cCChHHHHHHHHH-HHHhccCCCCCCcccCCCCCcHHHHHHH-HHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-
Q 004925 28 TPLLRYQKEWLAW-ALKQEESAIRGGILADEMGMGKTIQAIA-LVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP- 104 (723)
Q Consensus 28 ~~L~p~Q~~~~~~-~~~~~~~~~~g~iLad~~GlGKT~~al~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P- 104 (723)
..|+|+|.+++.. ++.. ++.+++.++|+|||.++.. ++...... . +.+|+|+|
T Consensus 22 ~~l~~~Q~~ai~~~~~~g-----~nvlv~apTGsGKT~~~~l~il~~l~~~-~------------------~~~l~l~P~ 77 (720)
T PRK00254 22 EELYPPQAEALKSGVLEG-----KNLVLAIPTASGKTLVAEIVMVNKLLRE-G------------------GKAVYLVPL 77 (720)
T ss_pred CCCCHHHHHHHHHHHhCC-----CcEEEECCCCcHHHHHHHHHHHHHHHhc-C------------------CeEEEEeCh
Confidence 4799999999874 3332 7889999999999999843 33332221 1 57899999
Q ss_pred hhhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccccCCCCEEEechhhhHHhh
Q 004925 105 VAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADY 158 (723)
Q Consensus 105 ~~l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ivi~t~~~l~~~~ 158 (723)
..|+.|+.+++.++.. ...++..++|..... ...+..++|+|+|++.+....
T Consensus 78 ~aLa~q~~~~~~~~~~-~g~~v~~~~Gd~~~~-~~~~~~~~IiV~Tpe~~~~ll 129 (720)
T PRK00254 78 KALAEEKYREFKDWEK-LGLRVAMTTGDYDST-DEWLGKYDIIIATAEKFDSLL 129 (720)
T ss_pred HHHHHHHHHHHHHHhh-cCCEEEEEeCCCCCc-hhhhccCCEEEEcHHHHHHHH
Confidence 6899999999987643 257888888876443 233567899999999875543
No 62
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.80 E-value=5.1e-18 Score=182.96 Aligned_cols=111 Identities=17% Similarity=0.168 Sum_probs=98.2
Q ss_pred cCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEE
Q 004925 568 DGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLM 647 (723)
Q Consensus 568 ~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~ 647 (723)
..+...||||..+..++.++++|...|+++..+||+++.++|+.+-++|.++ +..|++ .|.++|.|||=+....||+|
T Consensus 228 ~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~-~~~iiV-AT~AFGMGIdKpdVRfViH~ 305 (590)
T COG0514 228 QLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLND-EIKVMV-ATNAFGMGIDKPDVRFVIHY 305 (590)
T ss_pred ccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcC-CCcEEE-EeccccCccCCCCceEEEEe
Confidence 3445679999999999999999999999999999999999999999999976 666655 55999999999999999999
Q ss_pred CCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCC
Q 004925 648 DPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENT 682 (723)
Q Consensus 648 d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t 682 (723)
++|-+...+-|-+||++|-|......+ |+....
T Consensus 306 ~lP~s~EsYyQE~GRAGRDG~~a~ail--l~~~~D 338 (590)
T COG0514 306 DLPGSIESYYQETGRAGRDGLPAEAIL--LYSPED 338 (590)
T ss_pred cCCCCHHHHHHHHhhccCCCCcceEEE--eecccc
Confidence 999999999999999999998866544 555443
No 63
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.79 E-value=1.9e-17 Score=186.23 Aligned_cols=103 Identities=23% Similarity=0.341 Sum_probs=85.7
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHH-----HHHHhhcC----CC------CceEEEEecCCCc
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARD-----AAINRFTE----DP------DCKIFLMSLKAGG 633 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~-----~~i~~F~~----~~------~~~vll~s~~~~~ 633 (723)
.+.++|||++....++.|++.|.+.++ ..++|.+++.+|. .++++|.+ +. +. .+|++|++++
T Consensus 271 ~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~-~ILVATdVae 347 (844)
T TIGR02621 271 SGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGT-VYLVCTSAGE 347 (844)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccc-eEEeccchhh
Confidence 456899999999999999999999887 8999999999999 78999976 21 23 4567889999
Q ss_pred ccccccccCEEEEECCCCChhhHHHHHHhhhhcCCccc--EEEEEE
Q 004925 634 VALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKP--IRIVRF 677 (723)
Q Consensus 634 eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~--V~v~~l 677 (723)
.|||+.. ++||+...| ...+.||+||++|.|.... ++++.+
T Consensus 348 rGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 348 VGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 9999986 888886665 5899999999999998644 454433
No 64
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=5.3e-18 Score=172.93 Aligned_cols=135 Identities=18% Similarity=0.185 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHH-h---CCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEe
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLH-K---SGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMS 628 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~-~---~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s 628 (723)
|--.+..+|..+ ...++|+|+...+.+..|.+.|+ . ..+++..++|+.+.+.|.+.+.+|+.+ +.++||||
T Consensus 416 kpl~~~~lI~~~----k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g-~i~vLIcS 490 (620)
T KOG0350|consen 416 KPLAVYALITSN----KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKG-DINVLICS 490 (620)
T ss_pred chHhHHHHHHHh----hcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcC-CceEEEeh
Confidence 444555555543 55799999999999999999887 2 266777799999999999999999987 89988877
Q ss_pred cCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 004925 629 LKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLV 697 (723)
Q Consensus 629 ~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~ 697 (723)
++++.|+|+-..+.||+||||-+...+.+|+||..|-||... .|.++.. =|++.+..+.+|.+.
T Consensus 491 -D~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~--a~tll~~--~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 491 -DALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGY--AITLLDK--HEKRLFSKLLKKTNL 554 (620)
T ss_pred -hhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCce--EEEeecc--ccchHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999853 3444443 355666655555443
No 65
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.79 E-value=1.4e-17 Score=170.70 Aligned_cols=129 Identities=20% Similarity=0.172 Sum_probs=112.3
Q ss_pred cCcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEE
Q 004925 548 FQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLM 627 (723)
Q Consensus 548 ~~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~ 627 (723)
+..+.|..+|+++|... -...+|||.++...+++|++.|.+.|+.++.+||+-++++|+.++..|.++ ...||++
T Consensus 499 ~~ed~k~kkL~eil~~~----~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~-t~dIlVa 573 (673)
T KOG0333|consen 499 VSEDEKRKKLIEILESN----FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREG-TGDILVA 573 (673)
T ss_pred ecchHHHHHHHHHHHhC----CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhc-CCCEEEE
Confidence 34577999999999864 456899999999999999999999999999999999999999999999985 5566655
Q ss_pred ecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHH
Q 004925 628 SLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIE 684 (723)
Q Consensus 628 s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~e 684 (723)
|++++.|||++.+++||+||..-+...+.+||||.+|-|+...+.. |+++..-+
T Consensus 574 -TDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiS--flt~~dt~ 627 (673)
T KOG0333|consen 574 -TDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAIS--FLTPADTA 627 (673)
T ss_pred -ecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEE--EeccchhH
Confidence 5999999999999999999999999999999999999998865544 55554433
No 66
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=1.4e-16 Score=179.35 Aligned_cols=117 Identities=12% Similarity=0.060 Sum_probs=100.3
Q ss_pred cchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEec
Q 004925 550 SSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 629 (723)
Q Consensus 550 ~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~ 629 (723)
...|..++++.+... ...+.++||||......+.|...|.+.|+++..++|.+...++..+..++..+ . ++++|
T Consensus 410 ~~~K~~al~~~i~~~--~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g---~-VlIAT 483 (790)
T PRK09200 410 LDEKYKAVIEEVKER--HETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG---A-VTVAT 483 (790)
T ss_pred HHHHHHHHHHHHHHH--HhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC---e-EEEEc
Confidence 356999999998775 34578999999999999999999999999999999999887777777776543 4 45567
Q ss_pred CCCcccccc---cccC-----EEEEECCCCChhhHHHHHHhhhhcCCcccE
Q 004925 630 KAGGVALNL---TVAS-----HVFLMDPWWNPAVEQQAQDRIHRIGQYKPI 672 (723)
Q Consensus 630 ~~~~eGlnL---~~a~-----~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V 672 (723)
+.+|.|+|+ +.++ +||+++.|-++..+.|++||.+|.|.....
T Consensus 484 dmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s 534 (790)
T PRK09200 484 NMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSS 534 (790)
T ss_pred cchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeE
Confidence 999999999 4777 999999999999999999999999987543
No 67
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.76 E-value=4.8e-17 Score=169.11 Aligned_cols=150 Identities=14% Similarity=0.104 Sum_probs=116.3
Q ss_pred cchHHHHHHHHHHHHHhh-----cCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceE
Q 004925 550 SSTKIEALREEIRFMVER-----DGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKI 624 (723)
Q Consensus 550 ~s~Kl~~l~~~l~~~~~~-----~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~v 624 (723)
...|..+|++++...... ...++++||++....++.|+.+|...++++..|+|..++.+|.+.++.|..+ .+.+
T Consensus 312 ~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g-~~pv 390 (482)
T KOG0335|consen 312 EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNG-KAPV 390 (482)
T ss_pred chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcC-Ccce
Confidence 345777777777644211 1125899999999999999999999999999999999999999999999986 6666
Q ss_pred EEEecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeC-CCHHHHHHHHHHHHHHHhhccc
Q 004925 625 FLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIE-NTIEERILKLQEKKKLVFEGTV 702 (723)
Q Consensus 625 ll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~-~t~ee~~~~~~~~K~~~~~~~~ 702 (723)
+| .|.+++.|||...+.|||+||.|-+...+.+||||.+|.|+.-..+.+.= .. .++-+.+.+.+.+=.+..-.++
T Consensus 391 lV-aT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n-~~~~~i~~~L~~~l~ea~q~vP~wl 467 (482)
T KOG0335|consen 391 LV-ATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFN-EKNQNIAKALVEILTEANQEVPQWL 467 (482)
T ss_pred EE-EehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEec-cccchhHHHHHHHHHHhcccCcHHH
Confidence 65 45999999999999999999999999999999999999999865444322 22 2355556665554444333333
No 68
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.75 E-value=2.8e-16 Score=176.05 Aligned_cols=110 Identities=17% Similarity=0.190 Sum_probs=88.4
Q ss_pred CceEEEEcccHhHHHHHHHHHHhC--CCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEE
Q 004925 570 SAKGIVFSQFTSFLDLINYSLHKS--GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLM 647 (723)
Q Consensus 570 ~~KvIIF~~~~~~~~~l~~~L~~~--g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~ 647 (723)
+.++|||+.....++.+.+.|++. ++.+..++|++++. ++.+++|..++..+ +|++|++++.||+++.+++||.+
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~k-ILVATdIAERGIDIp~V~~VID~ 471 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPS-IIISTPYLESSVTIRNATHVYDT 471 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCcee-EEeccChhhccccccCeeEEEEC
Confidence 458999999999999999999887 79999999999864 56778875444556 45677999999999999999998
Q ss_pred C---CC---------CChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHH
Q 004925 648 D---PW---------WNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEE 685 (723)
Q Consensus 648 d---~~---------wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee 685 (723)
+ .| .+...+.||.||++|. ++-..|+|+.+.....
T Consensus 472 G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~~p 518 (675)
T PHA02653 472 GRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLLKP 518 (675)
T ss_pred CCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHhHH
Confidence 7 22 2667888999999997 3466777888776543
No 69
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.75 E-value=1.7e-17 Score=183.52 Aligned_cols=118 Identities=16% Similarity=0.145 Sum_probs=102.1
Q ss_pred chHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 004925 551 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 630 (723)
Q Consensus 551 s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~ 630 (723)
..|..++++.+.+. ...+..+||||.+....+.|.+.|.+.|++...++|. +.+|+..+..|... ...|+| +|+
T Consensus 388 ~~k~~ai~~~i~~~--~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~-~g~VtI-ATn 461 (745)
T TIGR00963 388 EEKWKAVVDEIKER--HAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGR-KGAVTI-ATN 461 (745)
T ss_pred HHHHHHHHHHHHHH--HhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCC-CceEEE-Eec
Confidence 45888998888777 4567899999999999999999999999999999998 67999999999754 555555 569
Q ss_pred CCcccccccc-------cCEEEEECCCCChhhHHHHHHhhhhcCCcccEEE
Q 004925 631 AGGVALNLTV-------ASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRI 674 (723)
Q Consensus 631 ~~~eGlnL~~-------a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v 674 (723)
.+|.|+|+.. .-|||.++.|-+...+.|++||.+|.|..-....
T Consensus 462 mAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~ 512 (745)
T TIGR00963 462 MAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512 (745)
T ss_pred cccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEE
Confidence 9999999887 6699999999999999999999999998855433
No 70
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=4.4e-16 Score=160.12 Aligned_cols=128 Identities=20% Similarity=0.267 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhC----------------------CCeEEEeecCCCHHHHH
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS----------------------GVNCVQLVGSMSIPARD 610 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~----------------------g~~~~~i~g~~~~~~r~ 610 (723)
++-+|..+|...++.....|+|||....+.++.=+.+|... +.++..++|+|++++|.
T Consensus 408 RLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRt 487 (708)
T KOG0348|consen 408 RLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERT 487 (708)
T ss_pred hHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHH
Confidence 55677788888877778889999999998888777777653 44589999999999999
Q ss_pred HHHHhhcCCCCceEEEEecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHH
Q 004925 611 AAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIE 684 (723)
Q Consensus 611 ~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~e 684 (723)
..++.|.....+ ||| .|++++.||||+....||-||+|.++..+.+|+||.-|.|.+..-.. |+++...|
T Consensus 488 s~f~~Fs~~~~~-VLL-cTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alL--fL~P~Eae 557 (708)
T KOG0348|consen 488 SVFQEFSHSRRA-VLL-CTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALL--FLLPSEAE 557 (708)
T ss_pred HHHHhhccccce-EEE-ehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEE--EecccHHH
Confidence 999999986444 555 55999999999999999999999999999999999999998866443 45555455
No 71
>PRK09401 reverse gyrase; Reviewed
Probab=99.75 E-value=1.7e-16 Score=188.42 Aligned_cols=103 Identities=12% Similarity=0.146 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhH---HHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEe-
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSF---LDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMS- 628 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~---~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s- 628 (723)
|...+.+++..+ +.++|||++.... ++.|...|+..|+++..++|++ ...+++|.++ .++|||++
T Consensus 316 k~~~L~~ll~~l-----~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G-~~~VLVata 384 (1176)
T PRK09401 316 SVEKLVELVKRL-----GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEG-EVDVLVGVA 384 (1176)
T ss_pred HHHHHHHHHHhc-----CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCC-CCCEEEEec
Confidence 666677776543 2479999998776 9999999999999999999998 2346999986 88988886
Q ss_pred --cCCCcccccccc-cCEEEEECCCC------ChhhHHHHHHhhhhc
Q 004925 629 --LKAGGVALNLTV-ASHVFLMDPWW------NPAVEQQAQDRIHRI 666 (723)
Q Consensus 629 --~~~~~eGlnL~~-a~~vI~~d~~w------n~~~~~Q~iGRi~R~ 666 (723)
+++++.|||++. .++||||+.|- .......++||+...
T Consensus 385 s~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 385 SYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred CCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 789999999997 89999999997 556677888888753
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.74 E-value=9.5e-16 Score=162.36 Aligned_cols=95 Identities=14% Similarity=0.161 Sum_probs=73.3
Q ss_pred HHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCC--CeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccc
Q 004925 559 EEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSG--VNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVAL 636 (723)
Q Consensus 559 ~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g--~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGl 636 (723)
+.+.+..+..++.|+|||++....++.++..|+..| +.+..++|.+++.+|.+.. ... +|++|++++.||
T Consensus 261 ~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~-------~~~-iLVaTdv~~rGi 332 (357)
T TIGR03158 261 EEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM-------QFD-ILLGTSTVDVGV 332 (357)
T ss_pred HHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc-------cCC-EEEEecHHhccc
Confidence 333333323466799999999999999999999864 6788999999988886543 334 556779999999
Q ss_pred cccccCEEEEECCCCChhhHHHHHHhhh
Q 004925 637 NLTVASHVFLMDPWWNPAVEQQAQDRIH 664 (723)
Q Consensus 637 nL~~a~~vI~~d~~wn~~~~~Q~iGRi~ 664 (723)
|+... +|| ++ +-++..+.||+||++
T Consensus 333 Di~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 333 DFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 99864 666 56 568899999999974
No 73
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.72 E-value=1.9e-15 Score=169.32 Aligned_cols=120 Identities=15% Similarity=0.114 Sum_probs=99.5
Q ss_pred ceEEEEcccHhHHHHHHHHHHhCC-CeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEECC
Q 004925 571 AKGIVFSQFTSFLDLINYSLHKSG-VNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDP 649 (723)
Q Consensus 571 ~KvIIF~~~~~~~~~l~~~L~~~g-~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~ 649 (723)
..++||++.+.+++.+...|++.+ ..+..=||+.+.+.|..+-++|.++ ..++++|| .++.-|||.-..+.||.+..
T Consensus 254 ~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G-~lravV~T-SSLELGIDiG~vdlVIq~~S 331 (814)
T COG1201 254 RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEG-ELKAVVAT-SSLELGIDIGDIDLVIQLGS 331 (814)
T ss_pred CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcC-CceEEEEc-cchhhccccCCceEEEEeCC
Confidence 378999999999999999999886 8899999999999999999999987 58877766 89999999999999999999
Q ss_pred CCChhhHHHHHHhhhh-cCCcccEEEEEEEeCCCHHHHHHHHHHHHHH
Q 004925 650 WWNPAVEQQAQDRIHR-IGQYKPIRIVRFLIENTIEERILKLQEKKKL 696 (723)
Q Consensus 650 ~wn~~~~~Q~iGRi~R-~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~ 696 (723)
|-+.+...||+||+++ .|. +--.++++.+ .++.+.-...-+..
T Consensus 332 P~sV~r~lQRiGRsgHr~~~---~Skg~ii~~~-r~dllE~~vi~~~a 375 (814)
T COG1201 332 PKSVNRFLQRIGRAGHRLGE---VSKGIIIAED-RDDLLECLVLADLA 375 (814)
T ss_pred cHHHHHHhHhccccccccCC---cccEEEEecC-HHHHHHHHHHHHHH
Confidence 9999999999999987 343 3333355666 56555554444433
No 74
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=2.7e-15 Score=165.43 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=95.1
Q ss_pred chHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 004925 551 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 630 (723)
Q Consensus 551 s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~ 630 (723)
..|..+|.+.+.... ..+..+||||......+.|...|.+.|+++..++|.+. +|+..+..|... ... ++++|+
T Consensus 456 ~~K~~aL~~~i~~~~--~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~-~g~-VlVATd 529 (656)
T PRK12898 456 AAKWAAVAARVRELH--AQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQ-RGR-ITVATN 529 (656)
T ss_pred HHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCC-CCc-EEEEcc
Confidence 468999999998763 34467999999999999999999999999999999865 555566666533 234 556779
Q ss_pred CCccccccc---ccC-----EEEEECCCCChhhHHHHHHhhhhcCCcccE
Q 004925 631 AGGVALNLT---VAS-----HVFLMDPWWNPAVEQQAQDRIHRIGQYKPI 672 (723)
Q Consensus 631 ~~~eGlnL~---~a~-----~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V 672 (723)
.++.|+|+. .+. +||+++.|-+...+.|++||.+|.|..-.+
T Consensus 530 mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s 579 (656)
T PRK12898 530 MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSY 579 (656)
T ss_pred chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEE
Confidence 999999988 444 999999999999999999999999977443
No 75
>COG4889 Predicted helicase [General function prediction only]
Probab=99.71 E-value=1.8e-16 Score=170.63 Aligned_cols=93 Identities=18% Similarity=0.126 Sum_probs=75.3
Q ss_pred CcCCccccccccccCCCCCCCCccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccC
Q 004925 5 DDVDLDQQNAFMTETAEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELD 84 (723)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~p~~~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~ 84 (723)
.++||+.-.+ .....+.|+.-..+|||||..++...........||- |.+++|+|||+|+|-+...+..
T Consensus 138 s~IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGk-LIMAcGTGKTfTsLkisEala~--------- 206 (1518)
T COG4889 138 SPIDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGK-LIMACGTGKTFTSLKISEALAA--------- 206 (1518)
T ss_pred CCCChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCc-EEEecCCCccchHHHHHHHHhh---------
Confidence 4577877777 5566778888889999999999999999888774555 5578999999999988876654
Q ss_pred CCCCCCCCCCCCCceEEEech-hhHHHHHHHHHhhcC
Q 004925 85 ASSSSSTGLLGIKATLVICPV-AAVTQWVSEINRFTS 120 (723)
Q Consensus 85 ~~~~~~~~~~~~~~~LIv~P~-~l~~qW~~ei~~~~~ 120 (723)
..+|++||. +|+.|..+|+..-..
T Consensus 207 ------------~~iL~LvPSIsLLsQTlrew~~~~~ 231 (1518)
T COG4889 207 ------------ARILFLVPSISLLSQTLREWTAQKE 231 (1518)
T ss_pred ------------hheEeecchHHHHHHHHHHHhhccC
Confidence 588999995 789999888876554
No 76
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.70 E-value=9e-16 Score=156.94 Aligned_cols=107 Identities=17% Similarity=0.208 Sum_probs=95.7
Q ss_pred ceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEECCC
Q 004925 571 AKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPW 650 (723)
Q Consensus 571 ~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~ 650 (723)
.++|||++....++.|.-.|-..|+++..++|+.++.+|...+..|.+. .+.|||++ ++++.|||+.....||+|+.|
T Consensus 427 ~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~-eidvLiaT-DvAsRGLDI~gV~tVINy~mP 504 (691)
T KOG0338|consen 427 DRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKE-EIDVLIAT-DVASRGLDIEGVQTVINYAMP 504 (691)
T ss_pred cceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhc-cCCEEEEe-chhhccCCccceeEEEeccCc
Confidence 4899999999999999999999999999999999999999999999976 78876655 999999999999999999999
Q ss_pred CChhhHHHHHHhhhhcCCcccEEEEEEEeCC
Q 004925 651 WNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 681 (723)
Q Consensus 651 wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~ 681 (723)
-+...|.+|.||.-|-|... +.+.|+.++
T Consensus 505 ~t~e~Y~HRVGRTARAGRaG--rsVtlvgE~ 533 (691)
T KOG0338|consen 505 KTIEHYLHRVGRTARAGRAG--RSVTLVGES 533 (691)
T ss_pred hhHHHHHHHhhhhhhcccCc--ceEEEeccc
Confidence 99999999999999998763 333456665
No 77
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.70 E-value=2.3e-15 Score=155.43 Aligned_cols=143 Identities=20% Similarity=0.204 Sum_probs=118.5
Q ss_pred hHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhC--CCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEec
Q 004925 552 TKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS--GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 629 (723)
Q Consensus 552 ~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~--g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~ 629 (723)
.|+..|-..|..+ ...|.|||...-..+.+++..|.+. |++...++|.|++..|..+...|... -.++|..|
T Consensus 299 ~Ki~~L~sFI~sh----lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~--~~~vLF~T 372 (758)
T KOG0343|consen 299 DKIDMLWSFIKSH----LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRK--RAVVLFCT 372 (758)
T ss_pred hHHHHHHHHHHhc----cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHh--cceEEEee
Confidence 4888888777754 6679999999999999999999876 99999999999999999999999863 34456667
Q ss_pred CCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHhhcccC
Q 004925 630 KAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVG 703 (723)
Q Consensus 630 ~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~~~~~~~ 703 (723)
++++.|||++.++.||-+|-|-+..+|++|.||.-|++......+ +...+-+|.|...+..|.--++.+.-
T Consensus 373 Dv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll---~L~psEeE~~l~~Lq~k~I~i~~i~i 443 (758)
T KOG0343|consen 373 DVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLL---MLTPSEEEAMLKKLQKKKIPIKEIKI 443 (758)
T ss_pred hhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEE---EEcchhHHHHHHHHHHcCCCHHhhcc
Confidence 999999999999999999999999999999999999987765544 23344568888888887644444443
No 78
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.69 E-value=1.2e-15 Score=159.90 Aligned_cols=112 Identities=20% Similarity=0.220 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 632 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~ 632 (723)
|+..|-+++..+ |-.+.||||....-++-++.+|+..|+++..|.|.|++.+|..++...++- .++| |++|+..
T Consensus 259 klq~L~~vf~~i----py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f-~~rI-LVsTDLt 332 (980)
T KOG4284|consen 259 KLQKLTHVFKSI----PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAF-RVRI-LVSTDLT 332 (980)
T ss_pred HHHHHHHHHhhC----chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhc-eEEE-EEecchh
Confidence 555555555544 556889999999999999999999999999999999999999999988764 6775 5577999
Q ss_pred cccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcc
Q 004925 633 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYK 670 (723)
Q Consensus 633 ~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~ 670 (723)
+.|||-..+|.||++|+|-+..++.+||||++|+|...
T Consensus 333 aRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G 370 (980)
T KOG4284|consen 333 ARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHG 370 (980)
T ss_pred hccCCccccceEEecCCCcchHHHHHHhhhcccccccc
Confidence 99999999999999999999999999999999999764
No 79
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.69 E-value=3.1e-15 Score=151.92 Aligned_cols=119 Identities=17% Similarity=0.199 Sum_probs=102.9
Q ss_pred cchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhC--CCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEE
Q 004925 550 SSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS--GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLM 627 (723)
Q Consensus 550 ~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~--g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~ 627 (723)
..-|+..++++|.. ...+|+|||-..-..+++....|+.. ...+..+||.|++.+|...+..|.+. .-.||+
T Consensus 239 a~eK~~~lv~~L~~----~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~-~~~vl~- 312 (567)
T KOG0345|consen 239 ADEKLSQLVHLLNN----NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKL-SNGVLF- 312 (567)
T ss_pred HHHHHHHHHHHHhc----cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhc-cCceEE-
Confidence 35589999998875 35689999999888899988888775 78899999999999999999999873 334455
Q ss_pred ecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEE
Q 004925 628 SLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRI 674 (723)
Q Consensus 628 s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v 674 (723)
+|++++.|||++..+.||.||||-+|+.+.+|.||..|.|....-.|
T Consensus 313 ~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aiv 359 (567)
T KOG0345|consen 313 CTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIV 359 (567)
T ss_pred eehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEE
Confidence 55999999999999999999999999999999999999998865444
No 80
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.69 E-value=6.8e-15 Score=144.43 Aligned_cols=118 Identities=20% Similarity=0.227 Sum_probs=106.5
Q ss_pred chHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 004925 551 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 630 (723)
Q Consensus 551 s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~ 630 (723)
..|-.+++..|..+..+ ++..++||++...+.+.|...|+..++.+..+++.|++.+|...+.+|..+ ..++||++ +
T Consensus 236 ~vkdaYLv~~Lr~~~~~-~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~-~~~iliaT-D 312 (442)
T KOG0340|consen 236 DVKDAYLVHLLRDFENK-ENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSN-AARILIAT-D 312 (442)
T ss_pred hhhHHHHHHHHhhhhhc-cCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhc-CccEEEEe-c
Confidence 45778888888887533 667899999999999999999999999999999999999999999999986 77876655 9
Q ss_pred CCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCccc
Q 004925 631 AGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKP 671 (723)
Q Consensus 631 ~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~ 671 (723)
+++.|+|.+.+..||++|.|-+|..+++|.||.-|-|....
T Consensus 313 VAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~ 353 (442)
T KOG0340|consen 313 VASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGM 353 (442)
T ss_pred hhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcc
Confidence 99999999999999999999999999999999999988754
No 81
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.69 E-value=3.1e-15 Score=178.23 Aligned_cols=95 Identities=13% Similarity=0.097 Sum_probs=83.3
Q ss_pred CceEEEEcccHhHHHHHHHHHHhCC---------------------------------CeEEEeecCCCHHHHHHHHHhh
Q 004925 570 SAKGIVFSQFTSFLDLINYSLHKSG---------------------------------VNCVQLVGSMSIPARDAAINRF 616 (723)
Q Consensus 570 ~~KvIIF~~~~~~~~~l~~~L~~~g---------------------------------~~~~~i~g~~~~~~r~~~i~~F 616 (723)
+.++|||++.+..++.+...|++.. +.+...||+++.++|..+.+.|
T Consensus 244 ~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~f 323 (1490)
T PRK09751 244 HRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQAL 323 (1490)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHH
Confidence 4689999999999999998887631 1246788999999999999999
Q ss_pred cCCCCceEEEEecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhc
Q 004925 617 TEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRI 666 (723)
Q Consensus 617 ~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~ 666 (723)
+++ ..++++ +|.+++.|||+..+++||+++.|.+...+.||+||++|.
T Consensus 324 K~G-~LrvLV-ATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 324 KSG-ELRCVV-ATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HhC-CceEEE-eCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 986 677655 559999999999999999999999999999999999996
No 82
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.69 E-value=2.6e-15 Score=170.55 Aligned_cols=108 Identities=22% Similarity=0.280 Sum_probs=86.4
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hhh
Q 004925 29 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAA 107 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~l 107 (723)
.|+|.|++++...+.. + ++.|+|.+||+|||++|+..+........ ++++.||| ++|
T Consensus 31 el~~~qq~av~~~~~~---~-~N~li~aPTgsGKTlIA~lai~~~l~~~~------------------~k~vYivPlkAL 88 (766)
T COG1204 31 ELFNPQQEAVEKGLLS---D-ENVLISAPTGSGKTLIALLAILSTLLEGG------------------GKVVYIVPLKAL 88 (766)
T ss_pred HhhHHHHHHhhccccC---C-CcEEEEcCCCCchHHHHHHHHHHHHHhcC------------------CcEEEEeChHHH
Confidence 8999999999776544 3 88999999999999999877766555432 68999999 789
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccccCCCCEEEechhhhHHhhhh
Q 004925 108 VTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRK 160 (723)
Q Consensus 108 ~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ivi~t~~~l~~~~~~ 160 (723)
..+-..++.+|-. ..+++.+++|+..... ..+.+++|+|+|++.+-...++
T Consensus 89 a~Ek~~~~~~~~~-~GirV~~~TgD~~~~~-~~l~~~~ViVtT~EK~Dsl~R~ 139 (766)
T COG1204 89 AEEKYEEFSRLEE-LGIRVGISTGDYDLDD-ERLARYDVIVTTPEKLDSLTRK 139 (766)
T ss_pred HHHHHHHhhhHHh-cCCEEEEecCCcccch-hhhccCCEEEEchHHhhHhhhc
Confidence 9888888883322 2799999999886544 6678999999999998765543
No 83
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.69 E-value=1e-15 Score=152.33 Aligned_cols=136 Identities=21% Similarity=0.321 Sum_probs=110.7
Q ss_pred chHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 004925 551 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 630 (723)
Q Consensus 551 s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~ 630 (723)
+.|+..+..+++.+ ++..|+|||+.....++.|..-|--.|+..-.++|+-.+.+|+..+..|..+ .+++|+ +|+
T Consensus 449 ~~k~~~~~~f~~~m---s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG-~vrILv-aTD 523 (629)
T KOG0336|consen 449 SEKLEIVQFFVANM---SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSG-EVRILV-ATD 523 (629)
T ss_pred HHHHHHHHHHHHhc---CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcC-ceEEEE-Eec
Confidence 44666666666655 5678999999999999999999999999999999999999999999999976 788655 559
Q ss_pred CCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCC--CHHHHHHHHHHH
Q 004925 631 AGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN--TIEERILKLQEK 693 (723)
Q Consensus 631 ~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~--t~ee~~~~~~~~ 693 (723)
.++.|||++..+||++||.|-|-..+.+|+||.+|-|.+.. .+ .|++.+ ++-+-+.+++.+
T Consensus 524 laSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~-si-s~lt~~D~~~a~eLI~ILe~ 586 (629)
T KOG0336|consen 524 LASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGT-SI-SFLTRNDWSMAEELIQILER 586 (629)
T ss_pred hhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcc-eE-EEEehhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997754 22 234443 344445554443
No 84
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.68 E-value=7.3e-15 Score=167.48 Aligned_cols=96 Identities=11% Similarity=0.138 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhC--CCeEEEeecCCC--HHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEECCC---CCh-
Q 004925 582 FLDLINYSLHKS--GVNCVQLVGSMS--IPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPW---WNP- 653 (723)
Q Consensus 582 ~~~~l~~~L~~~--g~~~~~i~g~~~--~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~---wn~- 653 (723)
-.+.+++.|.+. +.++..++++++ ..++++++++|.++ ++.+|| +|+..+.|+|++.++.|++++.+ ..|
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g-~~~ILV-gT~~iakG~d~p~v~lV~il~aD~~l~~pd 515 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARG-EADILI-GTQMLAKGHDFPNVTLVGVLDADLGLFSPD 515 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcC-CCCEEE-EChhhccCCCCCCcCEEEEEcCchhccCCc
Confidence 445566666554 678889999886 46789999999975 777655 66899999999999999887665 222
Q ss_pred --------hhHHHHHHhhhhcCCcccEEEEEEEe
Q 004925 654 --------AVEQQAQDRIHRIGQYKPIRIVRFLI 679 (723)
Q Consensus 654 --------~~~~Q~iGRi~R~Gq~~~V~v~~l~~ 679 (723)
..+.|+.||++|.|....|.+...-.
T Consensus 516 fra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 516 FRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred cchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCC
Confidence 56899999999987776676655433
No 85
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.67 E-value=4.1e-15 Score=154.32 Aligned_cols=106 Identities=16% Similarity=0.185 Sum_probs=92.2
Q ss_pred ceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEE----
Q 004925 571 AKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL---- 646 (723)
Q Consensus 571 ~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~---- 646 (723)
.+.|||+.++.-.+.|+.+|...|++..-+|++++..+|..+-..|.+. ...+ +++|.+++.|+|++ |+.|||
T Consensus 441 GQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q-~l~~-VVTTAAL~AGVDFP-ASQVIFEsLa 517 (830)
T COG1202 441 GQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQ-ELAA-VVTTAALAAGVDFP-ASQVIFESLA 517 (830)
T ss_pred CceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcC-Ccce-EeehhhhhcCCCCc-hHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999875 5554 56889999999999 677765
Q ss_pred ECCCC-ChhhHHHHHHhhhhcCCcccEEEEEEEe
Q 004925 647 MDPWW-NPAVEQQAQDRIHRIGQYKPIRIVRFLI 679 (723)
Q Consensus 647 ~d~~w-n~~~~~Q~iGRi~R~Gq~~~V~v~~l~~ 679 (723)
|...| +|..++|..||++|.+-...-.||.++-
T Consensus 518 MG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllve 551 (830)
T COG1202 518 MGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVE 551 (830)
T ss_pred cccccCCHHHHHHHhcccCCCCcccCceEEEEec
Confidence 66667 8899999999999999876666666663
No 86
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.67 E-value=1.2e-14 Score=143.43 Aligned_cols=127 Identities=17% Similarity=0.242 Sum_probs=105.1
Q ss_pred chHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 004925 551 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 630 (723)
Q Consensus 551 s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~ 630 (723)
..|+++|.+ |...+ .-...||||+...++.+|+..|.+.|+.+..++|.++.++|..++++|+++ ..+||| +|.
T Consensus 315 ~~K~~~l~~-lyg~~---tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g-~~kVLi-tTn 388 (477)
T KOG0332|consen 315 DDKYQALVN-LYGLL---TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREG-KEKVLI-TTN 388 (477)
T ss_pred hhHHHHHHH-HHhhh---hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcC-cceEEE-Eec
Confidence 458888888 44333 223779999999999999999999999999999999999999999999986 667655 679
Q ss_pred CCcccccccccCEEEEECCCC------ChhhHHHHHHhhhhcCCcccEEEEEEEe-CCCHHH
Q 004925 631 AGGVALNLTVASHVFLMDPWW------NPAVEQQAQDRIHRIGQYKPIRIVRFLI-ENTIEE 685 (723)
Q Consensus 631 ~~~eGlnL~~a~~vI~~d~~w------n~~~~~Q~iGRi~R~Gq~~~V~v~~l~~-~~t~ee 685 (723)
+.+.|||.+.++.||+||+|- .+.+|.+||||.+|+|.+ .+.+ +|+- .++.+.
T Consensus 389 V~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkk-G~a~-n~v~~~~s~~~ 448 (477)
T KOG0332|consen 389 VCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKK-GLAI-NLVDDKDSMNI 448 (477)
T ss_pred hhhcccccceEEEEEecCCccccCCCCCHHHHHHHhccccccccc-ceEE-EeecccCcHHH
Confidence 999999999999999999985 458899999999999966 3433 3554 455554
No 87
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.67 E-value=4.8e-15 Score=151.71 Aligned_cols=115 Identities=16% Similarity=0.161 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 004925 552 TKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 631 (723)
Q Consensus 552 ~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~ 631 (723)
.++..+..+|+++. .+.|+|||+..-.+..+++..|....+++..|||+.++..|.....+|.+. ..- +|+.|++
T Consensus 315 ~~f~ll~~~LKk~~---~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~ka-esg-IL~cTDV 389 (543)
T KOG0342|consen 315 SRFSLLYTFLKKNI---KRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKA-ESG-ILVCTDV 389 (543)
T ss_pred chHHHHHHHHHHhc---CCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhc-ccc-eEEecch
Confidence 45677777777663 237999999999999999999999999999999999999999999999875 334 4455599
Q ss_pred CcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCccc
Q 004925 632 GGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKP 671 (723)
Q Consensus 632 ~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~ 671 (723)
++.|+|.+.++.||-|+||-+|..|++|+||..|-|.+..
T Consensus 390 aARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~ 429 (543)
T KOG0342|consen 390 AARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGK 429 (543)
T ss_pred hhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCce
Confidence 9999999999999999999999999999999999776543
No 88
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.66 E-value=4e-14 Score=161.00 Aligned_cols=108 Identities=8% Similarity=0.059 Sum_probs=89.7
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhC--CCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEE
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKS--GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL 646 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~--g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~ 646 (723)
++.+|-...+..+.+..+...|+.. ...+++.||.|+..+-+.++.+|.++ .+.||||| -....|||++.||++|+
T Consensus 802 RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g-~~dVLv~T-TIIEtGIDIPnANTiII 879 (1139)
T COG1197 802 RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNG-EYDVLVCT-TIIETGIDIPNANTIII 879 (1139)
T ss_pred cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcC-CCCEEEEe-eeeecCcCCCCCceEEE
Confidence 4456666677778888888888876 66789999999999999999999986 88888776 67778999999999999
Q ss_pred ECCC-CChhhHHHHHHhhhhcCCcccEEEEEEEeC
Q 004925 647 MDPW-WNPAVEQQAQDRIHRIGQYKPIRIVRFLIE 680 (723)
Q Consensus 647 ~d~~-wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~ 680 (723)
-... +-.+.+-|-.||++|-.. .-+-|.++..
T Consensus 880 e~AD~fGLsQLyQLRGRVGRS~~--~AYAYfl~p~ 912 (1139)
T COG1197 880 ERADKFGLAQLYQLRGRVGRSNK--QAYAYFLYPP 912 (1139)
T ss_pred eccccccHHHHHHhccccCCccc--eEEEEEeecC
Confidence 7777 788999999999999544 3677767765
No 89
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.65 E-value=1.1e-14 Score=173.35 Aligned_cols=88 Identities=17% Similarity=0.201 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcccH---hHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEe--
Q 004925 554 IEALREEIRFMVERDGSAKGIVFSQFT---SFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMS-- 628 (723)
Q Consensus 554 l~~l~~~l~~~~~~~~~~KvIIF~~~~---~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s-- 628 (723)
...+.+++..+ +.++|||++.. ..++.|+..|+..|+++..++|+++ +..+++|.++ .++|||++
T Consensus 315 ~~~L~~ll~~l-----~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~G-~~~vLVata~ 384 (1171)
T TIGR01054 315 KETLLEIVKKL-----GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAEG-EIDVLIGVAS 384 (1171)
T ss_pred HHHHHHHHHHc-----CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHcC-CCCEEEEecc
Confidence 34555565433 24789999998 9999999999999999999999986 3689999986 88888887
Q ss_pred -cCCCcccccccc-cCEEEEECCCC
Q 004925 629 -LKAGGVALNLTV-ASHVFLMDPWW 651 (723)
Q Consensus 629 -~~~~~eGlnL~~-a~~vI~~d~~w 651 (723)
+++++.|||++. .++||||++|-
T Consensus 385 ~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 385 YYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred ccCcccccCCCCccccEEEEECCCC
Confidence 689999999998 79999999984
No 90
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.65 E-value=9.9e-16 Score=138.61 Aligned_cols=121 Identities=25% Similarity=0.324 Sum_probs=108.2
Q ss_pred chHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 004925 551 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 630 (723)
Q Consensus 551 s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~ 630 (723)
+.|+..+.+++.... .++.++|||+......+.+.++|.+.+.++..++|+++..+|..+++.|+++ ... +|+++.
T Consensus 11 ~~k~~~i~~~i~~~~--~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~-ili~t~ 86 (131)
T cd00079 11 DEKLEALLELLKEHL--KKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREG-EIV-VLVATD 86 (131)
T ss_pred HHHHHHHHHHHHhcc--cCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcC-CCc-EEEEcC
Confidence 369999999998763 2577999999999999999999999999999999999999999999999986 444 455679
Q ss_pred CCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEE
Q 004925 631 AGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIV 675 (723)
Q Consensus 631 ~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~ 675 (723)
++++|+|++.++++|+++++|++..+.|++||++|.||...|.+|
T Consensus 87 ~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 87 VIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999999997766653
No 91
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.65 E-value=2.1e-14 Score=157.79 Aligned_cols=96 Identities=14% Similarity=0.135 Sum_probs=73.2
Q ss_pred HHHHHHHHHhC--CCeEEEeecCCCHHHH--HHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEECCCC---C---
Q 004925 583 LDLINYSLHKS--GVNCVQLVGSMSIPAR--DAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWW---N--- 652 (723)
Q Consensus 583 ~~~l~~~L~~~--g~~~~~i~g~~~~~~r--~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~w---n--- 652 (723)
.+.+++.|.+. +.++..+++.++...+ ++++++|.++ ++.+| ++|+..+.|+|++.++.|++++.+- .
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g-~~~IL-VgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ 348 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANG-KADIL-IGTQMIAKGHHFPNVTLVGVLDADSGLHSPDF 348 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcC-CCCEE-EeCcccccCCCCCcccEEEEEcCcccccCccc
Confidence 56677777766 7899999999876655 8999999975 67755 5668999999999999997766542 2
Q ss_pred ------hhhHHHHHHhhhhcCCcccEEEEEEEeC
Q 004925 653 ------PAVEQQAQDRIHRIGQYKPIRIVRFLIE 680 (723)
Q Consensus 653 ------~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~ 680 (723)
...+.|+.||++|.+....|.+..+...
T Consensus 349 ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 349 RAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred chHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 2568899999999877666665544433
No 92
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.64 E-value=1.5e-14 Score=147.93 Aligned_cols=127 Identities=16% Similarity=0.185 Sum_probs=111.1
Q ss_pred chHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 004925 551 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 630 (723)
Q Consensus 551 s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~ 630 (723)
..|+.+|.+-|.... ...|||||+.-...++.|...|...|+.+..++|++.+++|.+.+..|... ...|++ .++
T Consensus 452 ~~Kl~wl~~~L~~f~---S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk-~~~Vlv-atD 526 (731)
T KOG0339|consen 452 EKKLNWLLRHLVEFS---SEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKK-RKPVLV-ATD 526 (731)
T ss_pred HHHHHHHHHHhhhhc---cCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhc-CCceEE-Eee
Confidence 458999888887763 334999999999999999999999999999999999999999999999975 556555 559
Q ss_pred CCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHH
Q 004925 631 AGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIE 684 (723)
Q Consensus 631 ~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~e 684 (723)
+++.|+++.....||+||..-+...+.|||||.+|-|.+ -..|.|+++...+
T Consensus 527 vaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 527 VAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred HhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 999999999999999999999999999999999999987 4567788875544
No 93
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.64 E-value=1.9e-15 Score=145.87 Aligned_cols=114 Identities=16% Similarity=0.261 Sum_probs=102.3
Q ss_pred cchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEec
Q 004925 550 SSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 629 (723)
Q Consensus 550 ~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~ 629 (723)
.+.|+-.|-.++..+. --+.||||+....++.|++-+.+.|+++..++..|.++.|..++..|.++ .|+.++|+
T Consensus 306 e~qKvhCLntLfskLq----INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G-~crnLVct- 379 (459)
T KOG0326|consen 306 ERQKVHCLNTLFSKLQ----INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNG-KCRNLVCT- 379 (459)
T ss_pred hhhhhhhHHHHHHHhc----ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhcc-ccceeeeh-
Confidence 3557766666666542 23779999999999999999999999999999999999999999999986 89988877
Q ss_pred CCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCc
Q 004925 630 KAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQY 669 (723)
Q Consensus 630 ~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~ 669 (723)
+....|||.|..|.||+||.|-++.++.+||||.+|+|--
T Consensus 380 DL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhl 419 (459)
T KOG0326|consen 380 DLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHL 419 (459)
T ss_pred hhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCc
Confidence 9999999999999999999999999999999999999965
No 94
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.63 E-value=8e-16 Score=148.19 Aligned_cols=165 Identities=25% Similarity=0.394 Sum_probs=108.2
Q ss_pred cCChHHHHHHHHHHHHhccCC--CCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEech
Q 004925 28 TPLLRYQKEWLAWALKQEESA--IRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV 105 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~--~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~ 105 (723)
.+|+|||.+++..++...... .+.+++..+||+|||++++.++..+.. +++++||.
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----------------------~~l~~~p~ 59 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----------------------KVLIVAPN 59 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----------------------EEEEEESS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----------------------ceeEecCH
Confidence 579999999999999876554 588999999999999999987776543 77999994
Q ss_pred -hhHHHHHHHHHhhcCCCCcEEEEEeC--CC---------CC---CCccccCCCCEEEechhhhHHhhhhccCCCccccc
Q 004925 106 -AAVTQWVSEINRFTSVGSTKVLIYHG--SN---------RE---RSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQ 170 (723)
Q Consensus 106 -~l~~qW~~ei~~~~~~~~~~~~~~~g--~~---------~~---~~~~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~ 170 (723)
.|+.||.+++..+... ........- .. .. .........++++++++.+........... ...
T Consensus 60 ~~l~~Q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~-~~~- 136 (184)
T PF04851_consen 60 ISLLEQWYDEFDDFGSE-KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKID-ESA- 136 (184)
T ss_dssp HHHHHHHHHHHHHHSTT-SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHhhhh-hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccc-cch-
Confidence 8999999999777652 222211110 00 00 001123567899999999987754311000 000
Q ss_pred ccCccchhhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEee
Q 004925 171 YCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILD 250 (723)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiD 250 (723)
. .........+++||+|
T Consensus 137 ------------------------------------~---------------------------~~~~~~~~~~~~vI~D 153 (184)
T PF04851_consen 137 ------------------------------------R---------------------------RSYKLLKNKFDLVIID 153 (184)
T ss_dssp ----------------------------------------------------------------GCHHGGGGSESEEEEE
T ss_pred ------------------------------------h---------------------------hhhhhccccCCEEEEe
Confidence 0 0001233467899999
Q ss_pred ccccccCCCcHHHHHHHhhhcCceEEEeCcCC
Q 004925 251 EAHFIKDRRSNTAKAVLALESSYKWALSGTPL 282 (723)
Q Consensus 251 EaH~~kn~~s~~~~~l~~l~~~~~l~LTaTP~ 282 (723)
|||++.+... ++.+......++++|||||.
T Consensus 154 EaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 154 EAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp TGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred hhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 9999966532 66666678889999999996
No 95
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.62 E-value=3.5e-14 Score=163.79 Aligned_cols=131 Identities=15% Similarity=0.146 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHH----HHHHhCC----CeEEEeecCCCHHHHHHHHHhhcCCCCceEE
Q 004925 554 IEALREEIRFMVERDGSAKGIVFSQFTSFLDLIN----YSLHKSG----VNCVQLVGSMSIPARDAAINRFTEDPDCKIF 625 (723)
Q Consensus 554 l~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~----~~L~~~g----~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vl 625 (723)
...+..++.... ..+.|.|+|+..+..+..+. ..+...+ ..+..+.|++..++|..+...|..+ +..+
T Consensus 292 ~~~~~~~~~~~~--~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g-~~~~- 367 (851)
T COG1205 292 LAELATLAALLV--RNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEG-ELLG- 367 (851)
T ss_pred HHHHHHHHHHHH--HcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcC-CccE-
Confidence 333334444443 35679999999999988886 4444445 6789999999999999999999986 5664
Q ss_pred EEecCCCcccccccccCEEEEECCCC-ChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHH
Q 004925 626 LMSLKAGGVALNLTVASHVFLMDPWW-NPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKL 690 (723)
Q Consensus 626 l~s~~~~~eGlnL~~a~~vI~~d~~w-n~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~ 690 (723)
++++.++..|+++...+.||....|- +.....|+.||++|.||.- .++...-.+-+|.++..-
T Consensus 368 ~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~--l~~~v~~~~~~d~yy~~~ 431 (851)
T COG1205 368 VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQES--LVLVVLRSDPLDSYYLRH 431 (851)
T ss_pred EecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCc--eEEEEeCCCccchhhhhC
Confidence 45779999999999999999999998 7799999999999999543 333233366677766553
No 96
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.61 E-value=1.5e-13 Score=158.09 Aligned_cols=107 Identities=21% Similarity=0.230 Sum_probs=89.0
Q ss_pred CceEEEEcccHhHHHHHHHHHHh---CCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEE
Q 004925 570 SAKGIVFSQFTSFLDLINYSLHK---SGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL 646 (723)
Q Consensus 570 ~~KvIIF~~~~~~~~~l~~~L~~---~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~ 646 (723)
+.++|||+.....++.+...|.. .++.+..++|+++.++|..+++.|.++ ..+| |++|++++.||++..+++||.
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G-~rkV-lVATnIAErgItIp~V~~VID 286 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQG-RRKV-VLATNIAETSLTIEGIRVVID 286 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccC-CeEE-EEecchHhhcccccCceEEEE
Confidence 45899999999999999999987 478999999999999999999999765 5565 557799999999999999999
Q ss_pred ECCC----CChh--------------hHHHHHHhhhhcCCcccEEEEEEEeCC
Q 004925 647 MDPW----WNPA--------------VEQQAQDRIHRIGQYKPIRIVRFLIEN 681 (723)
Q Consensus 647 ~d~~----wn~~--------------~~~Q~iGRi~R~Gq~~~V~v~~l~~~~ 681 (723)
++.+ +++. .+.||.||++|. ++=..|+|+++.
T Consensus 287 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~ 336 (819)
T TIGR01970 287 SGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEE 336 (819)
T ss_pred cCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHH
Confidence 8875 3443 378999999997 345567788654
No 97
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.60 E-value=9.7e-13 Score=129.03 Aligned_cols=138 Identities=12% Similarity=0.089 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhC--CCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCc
Q 004925 556 ALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS--GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGG 633 (723)
Q Consensus 556 ~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~--g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~ 633 (723)
+|...|+.. ...+.-++||.....+++.++..|++. ...++.+++.. ..|.+.+.+|+++ ... +|++|..+.
T Consensus 293 kl~~~lekq--~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G-~~~-lLiTTTILE 366 (441)
T COG4098 293 KLKRWLEKQ--RKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDG-KIT-LLITTTILE 366 (441)
T ss_pred HHHHHHHHH--HhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcC-ceE-EEEEeehhh
Confidence 344555554 346678999999999999999999654 33446666654 6889999999975 555 566779999
Q ss_pred ccccccccCEEEEECCC--CChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHhhc
Q 004925 634 VALNLTVASHVFLMDPW--WNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEG 700 (723)
Q Consensus 634 eGlnL~~a~~vI~~d~~--wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~~~~ 700 (723)
.|+.++..+..++=.-. ++.+.+.|..||++|--....-.|+.| ..|---++...+.+-|++.-.+
T Consensus 367 RGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FF-H~G~skaM~~A~keIk~MN~lg 434 (441)
T COG4098 367 RGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFF-HYGKSKAMKQARKEIKEMNKLG 434 (441)
T ss_pred cccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEE-eccchHHHHHHHHHHHHHHHHh
Confidence 99999999998885555 899999999999999654433333323 3333333344444445444433
No 98
>PRK14701 reverse gyrase; Provisional
Probab=99.59 E-value=9.8e-14 Score=168.63 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhhcCCceEEEEcccHhH---HHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEec--
Q 004925 555 EALREEIRFMVERDGSAKGIVFSQFTSF---LDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL-- 629 (723)
Q Consensus 555 ~~l~~~l~~~~~~~~~~KvIIF~~~~~~---~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~-- 629 (723)
..+.+++... +..+||||+.... ++.|+..|...|+++..++|+ |...+++|.++ +++|||++.
T Consensus 320 ~~L~~ll~~~-----g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G-~~~VLVaT~s~ 388 (1638)
T PRK14701 320 EHVRELLKKL-----GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEG-EIDYLIGVATY 388 (1638)
T ss_pred HHHHHHHHhC-----CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcC-CCCEEEEecCC
Confidence 4555555432 3588999998764 589999999999999999984 88999999987 888888774
Q ss_pred -CCCcccccccc-cCEEEEECCCC---ChhhHHHHH-------------HhhhhcCCc
Q 004925 630 -KAGGVALNLTV-ASHVFLMDPWW---NPAVEQQAQ-------------DRIHRIGQY 669 (723)
Q Consensus 630 -~~~~eGlnL~~-a~~vI~~d~~w---n~~~~~Q~i-------------GRi~R~Gq~ 669 (723)
.+++.|||++. ..+|||++.|- +...+.|.. ||++|-|..
T Consensus 389 ~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 389 YGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred CCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 57899999997 99999999997 665555554 888888854
No 99
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.59 E-value=1.1e-14 Score=144.01 Aligned_cols=128 Identities=22% Similarity=0.215 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 004925 552 TKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 631 (723)
Q Consensus 552 ~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~ 631 (723)
.|+-.+++.|+ ....+|+||++-..-++.|..||--.|..++.|+|+-.+++|...|..|+.+ .-.||+ .|++
T Consensus 408 aKiVylLeCLQ-----KT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~g-kKDVLV-ATDV 480 (610)
T KOG0341|consen 408 AKIVYLLECLQ-----KTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAG-KKDVLV-ATDV 480 (610)
T ss_pred hhhhhHHHHhc-----cCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcC-CCceEE-Eecc
Confidence 47788888775 3456999999999999999999999999999999999999999999999986 455555 5699
Q ss_pred CcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHH
Q 004925 632 GGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERIL 688 (723)
Q Consensus 632 ~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~ 688 (723)
++-|+|++...|||+||.|-.-..+.+||||.+|-|.+.-.+ .|+-+++-+..+.
T Consensus 481 ASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiAT--TfINK~~~esvLl 535 (610)
T KOG0341|consen 481 ASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIAT--TFINKNQEESVLL 535 (610)
T ss_pred hhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceee--eeecccchHHHHH
Confidence 999999999999999999999999999999999999775322 2555665544443
No 100
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.59 E-value=1e-13 Score=159.81 Aligned_cols=108 Identities=17% Similarity=0.135 Sum_probs=89.0
Q ss_pred CceEEEEcccHhHHHHHHHHHHh---CCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEE
Q 004925 570 SAKGIVFSQFTSFLDLINYSLHK---SGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL 646 (723)
Q Consensus 570 ~~KvIIF~~~~~~~~~l~~~L~~---~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~ 646 (723)
+.++|||+.....++.+.+.|+. .++.+..++|+++.++|..++..|.++ ..+ +|++|++++.||++..+++||.
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G-~rk-VlvATnIAErsLtIp~V~~VID 289 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAG-RRK-VVLATNIAETSLTIEGIRLVVD 289 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCC-CeE-EEEecchHHhcccccCceEEEE
Confidence 46899999999999999999987 588899999999999999999999764 555 5567799999999999999999
Q ss_pred ECCCC----C--------------hhhHHHHHHhhhhcCCcccEEEEEEEeCCC
Q 004925 647 MDPWW----N--------------PAVEQQAQDRIHRIGQYKPIRIVRFLIENT 682 (723)
Q Consensus 647 ~d~~w----n--------------~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t 682 (723)
++.+- + ...+.||.||++|. .+-..|+|+++..
T Consensus 290 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~ 340 (812)
T PRK11664 290 SGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQ 340 (812)
T ss_pred CCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHH
Confidence 66542 2 13678999999887 3567788887543
No 101
>PRK09694 helicase Cas3; Provisional
Probab=99.58 E-value=1.8e-13 Score=157.22 Aligned_cols=98 Identities=13% Similarity=0.102 Sum_probs=80.4
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhCC---CeEEEeecCCCHHHH----HHHHHhhcCCCCc--eEEEEecCCCccccccc
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKSG---VNCVQLVGSMSIPAR----DAAINRFTEDPDC--KIFLMSLKAGGVALNLT 639 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~g---~~~~~i~g~~~~~~r----~~~i~~F~~~~~~--~vll~s~~~~~eGlnL~ 639 (723)
.+.+++||++..+.+..+++.|++.+ .++..++|.++..+| .++++.|..++.. ..+|++|++...|+|+.
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId 638 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD 638 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC
Confidence 45789999999999999999999764 689999999999988 5678899443232 24667889999999994
Q ss_pred ccCEEEEECCCCChhhHHHHHHhhhhcCCc
Q 004925 640 VASHVFLMDPWWNPAVEQQAQDRIHRIGQY 669 (723)
Q Consensus 640 ~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~ 669 (723)
++.+|....| ...+.||+||++|.|.+
T Consensus 639 -~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 639 -FDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred -CCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 6888775444 67999999999999874
No 102
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.56 E-value=1.2e-13 Score=145.04 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=106.9
Q ss_pred chHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHH-HhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEec
Q 004925 551 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSL-HKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 629 (723)
Q Consensus 551 s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L-~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~ 629 (723)
-.|+-++.++|..- -...++||.+..+.+..|...| ...++.+..|+|..++.+|...+.+|+.+ .+.|+||+
T Consensus 372 ~~K~lA~rq~v~~g----~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g-~IwvLicT- 445 (593)
T KOG0344|consen 372 KGKLLALRQLVASG----FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIG-KIWVLICT- 445 (593)
T ss_pred hhHHHHHHHHHhcc----CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhcc-CeeEEEeh-
Confidence 45888888888753 4457899999999999999999 66799999999999999999999999987 88888766
Q ss_pred CCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeC
Q 004925 630 KAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIE 680 (723)
Q Consensus 630 ~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~ 680 (723)
++.+.|+|+++++.||+||.|-+...+..||||.+|-|+... .|.|++.
T Consensus 446 dll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~--Aitfytd 494 (593)
T KOG0344|consen 446 DLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGK--AITFYTD 494 (593)
T ss_pred hhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcc--eEEEecc
Confidence 999999999999999999999999999999999999998743 3445554
No 103
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.54 E-value=8.6e-15 Score=119.09 Aligned_cols=78 Identities=29% Similarity=0.511 Sum_probs=71.6
Q ss_pred HHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcC
Q 004925 588 YSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIG 667 (723)
Q Consensus 588 ~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~G 667 (723)
+.|+..|+++..++|+++..+|..+++.|+++ ...+|| +|.++++|+|++.+++||+++++||+..+.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~-~~~vli-~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSG-EIRVLI-ATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTT-SSSEEE-ESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhcc-CceEEE-eeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 46888999999999999999999999999986 445554 5699999999999999999999999999999999999987
No 104
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.54 E-value=5.4e-13 Score=150.21 Aligned_cols=120 Identities=12% Similarity=0.090 Sum_probs=103.8
Q ss_pred cchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEec
Q 004925 550 SSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 629 (723)
Q Consensus 550 ~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~ 629 (723)
...|..++++.+.++ ...+..|||||.+....+.|.+.|.+.|++...+++.+...+++.+.++|+.+. ++++|
T Consensus 426 ~~~k~~av~~~i~~~--~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~----VtIAT 499 (896)
T PRK13104 426 QADKFQAIIEDVREC--GVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA----VTIAT 499 (896)
T ss_pred HHHHHHHHHHHHHHH--HhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc----EEEec
Confidence 356999999999887 457789999999999999999999999999999999999999999999999873 55567
Q ss_pred CCCccccccc--------------------------------------ccCEEEEECCCCChhhHHHHHHhhhhcCCccc
Q 004925 630 KAGGVALNLT--------------------------------------VASHVFLMDPWWNPAVEQQAQDRIHRIGQYKP 671 (723)
Q Consensus 630 ~~~~eGlnL~--------------------------------------~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~ 671 (723)
+.+|.|+|+. +.=|||--+.+-|-....|..||++|+|....
T Consensus 500 NmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGs 579 (896)
T PRK13104 500 NMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGS 579 (896)
T ss_pred cCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCc
Confidence 9999999966 23368888888899999999999999998765
Q ss_pred EEEE
Q 004925 672 IRIV 675 (723)
Q Consensus 672 V~v~ 675 (723)
...|
T Consensus 580 s~f~ 583 (896)
T PRK13104 580 SRFY 583 (896)
T ss_pred eEEE
Confidence 5443
No 105
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.54 E-value=2.9e-13 Score=151.62 Aligned_cols=117 Identities=14% Similarity=0.116 Sum_probs=99.0
Q ss_pred chHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 004925 551 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 630 (723)
Q Consensus 551 s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~ 630 (723)
..|..++++.+... ...+..+||||.+....+.|.+.|.+.|++...+++.+...++.-+..+++.+. ++++|+
T Consensus 423 ~~K~~al~~~i~~~--~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~----VtIATn 496 (796)
T PRK12906 423 DSKFNAVVKEIKER--HAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA----VTIATN 496 (796)
T ss_pred HHHHHHHHHHHHHH--HhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce----EEEEec
Confidence 46899999999876 356789999999999999999999999999999999987666666666665442 555669
Q ss_pred CCccccccc---ccC-----EEEEECCCCChhhHHHHHHhhhhcCCcccEE
Q 004925 631 AGGVALNLT---VAS-----HVFLMDPWWNPAVEQQAQDRIHRIGQYKPIR 673 (723)
Q Consensus 631 ~~~eGlnL~---~a~-----~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~ 673 (723)
.+|.|+|+. .+. |||.++.|-+...+.|++||.+|.|......
T Consensus 497 mAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~ 547 (796)
T PRK12906 497 MAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSR 547 (796)
T ss_pred cccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceE
Confidence 999999984 667 9999999999999999999999999876543
No 106
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.51 E-value=1e-12 Score=132.67 Aligned_cols=102 Identities=14% Similarity=0.089 Sum_probs=91.1
Q ss_pred eEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecC---------------------
Q 004925 572 KGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK--------------------- 630 (723)
Q Consensus 572 KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~--------------------- 630 (723)
|.|||.+..+-.-.|.-.|++.|++.++++|.++...|.-+|.+||.+ -++++|++-.
T Consensus 270 KsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG-~YdivIAtD~s~~~~~~eee~kgk~~e~~~k 348 (569)
T KOG0346|consen 270 KSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKG-LYDIVIATDDSADGDKLEEEVKGKSDEKNPK 348 (569)
T ss_pred ceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCc-ceeEEEEccCccchhhhhccccccccccCCC
Confidence 899999999999999999999999999999999999999999999986 7787776640
Q ss_pred -------------CCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEE
Q 004925 631 -------------AGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRI 674 (723)
Q Consensus 631 -------------~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v 674 (723)
..+.|||++.++.||+||.|-++..|++|+||..|-|.+..+..
T Consensus 349 ndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalS 405 (569)
T KOG0346|consen 349 NDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALS 405 (569)
T ss_pred CccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEE
Confidence 13569999999999999999999999999999999887765544
No 107
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.50 E-value=1.2e-12 Score=147.28 Aligned_cols=119 Identities=18% Similarity=0.175 Sum_probs=100.5
Q ss_pred chHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 004925 551 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 630 (723)
Q Consensus 551 s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~ 630 (723)
..|..++.+.+..+ ...+..+||||......+.|.+.|.+.|++...++|. +.+|+..+.+|... ...|+| +|+
T Consensus 413 ~~K~~aI~~~I~~~--~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~-~g~VtI-ATN 486 (830)
T PRK12904 413 KEKFDAVVEDIKER--HKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGR-PGAVTI-ATN 486 (830)
T ss_pred HHHHHHHHHHHHHH--HhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCC-CceEEE-ecc
Confidence 46999999999876 3467899999999999999999999999999999995 67999999999864 555554 569
Q ss_pred CCcccccccc--------------------------------------cCEEEEECCCCChhhHHHHHHhhhhcCCcccE
Q 004925 631 AGGVALNLTV--------------------------------------ASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPI 672 (723)
Q Consensus 631 ~~~eGlnL~~--------------------------------------a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V 672 (723)
.+|.|+|+.- .=|||.-+.+-|-....|..||++|+|.....
T Consensus 487 mAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss 566 (830)
T PRK12904 487 MAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSS 566 (830)
T ss_pred cccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCce
Confidence 9999999762 34788888888999999999999999988665
Q ss_pred EEE
Q 004925 673 RIV 675 (723)
Q Consensus 673 ~v~ 675 (723)
..|
T Consensus 567 ~f~ 569 (830)
T PRK12904 567 RFY 569 (830)
T ss_pred eEE
Confidence 554
No 108
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.48 E-value=2.8e-13 Score=131.92 Aligned_cols=162 Identities=27% Similarity=0.330 Sum_probs=111.5
Q ss_pred ccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-h
Q 004925 27 ITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-V 105 (723)
Q Consensus 27 ~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~ 105 (723)
...++|+|.+++..+.... +++++..++|+|||.+++.++........ .+++|+++| .
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~----~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-----------------~~~~l~~~p~~ 64 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGL----RDVILAAPTGSGKTLAALLPALEALKRGK-----------------GKRVLVLVPTR 64 (201)
T ss_pred CCCCCHHHHHHHHHHHcCC----CcEEEECCCCCchhHHHHHHHHHHhcccC-----------------CCcEEEEeCCH
Confidence 4578999999999877532 57899999999999987766665544332 168999999 6
Q ss_pred hhHHHHHHHHHhhcCCCC-cEEEEEeCCCCCCCcccc--CCCCEEEechhhhHHhhhhccCCCcccccccCccchhhhhh
Q 004925 106 AAVTQWVSEINRFTSVGS-TKVLIYHGSNRERSAKQF--SEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLV 182 (723)
Q Consensus 106 ~l~~qW~~ei~~~~~~~~-~~~~~~~g~~~~~~~~~~--~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (723)
.+..||..++.+.++... .....+.+.........+ ..++++++|++.+........
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~-------------------- 124 (201)
T smart00487 65 ELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL-------------------- 124 (201)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC--------------------
Confidence 788999999999886433 334444443322111111 223899999999887754311
Q ss_pred hhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccccccC-CCcH
Q 004925 183 VHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKD-RRSN 261 (723)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~kn-~~s~ 261 (723)
....+++++|+||+|.+.+ ....
T Consensus 125 --------------------------------------------------------~~~~~~~~iIiDE~h~~~~~~~~~ 148 (201)
T smart00487 125 --------------------------------------------------------LELSNVDLVILDEAHRLLDGGFGD 148 (201)
T ss_pred --------------------------------------------------------cCHhHCCEEEEECHHHHhcCCcHH
Confidence 2334678999999999986 3333
Q ss_pred HHHHH-Hhh-hcCceEEEeCcCCCCc
Q 004925 262 TAKAV-LAL-ESSYKWALSGTPLQNR 285 (723)
Q Consensus 262 ~~~~l-~~l-~~~~~l~LTaTP~~n~ 285 (723)
....+ ..+ ....++++||||..+.
T Consensus 149 ~~~~~~~~~~~~~~~v~~saT~~~~~ 174 (201)
T smart00487 149 QLEKLLKLLPKNVQLLLLSATPPEEI 174 (201)
T ss_pred HHHHHHHhCCccceEEEEecCCchhH
Confidence 33333 333 4788899999997443
No 109
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.48 E-value=4.7e-12 Score=140.51 Aligned_cols=95 Identities=16% Similarity=0.135 Sum_probs=67.6
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hhhHHHHHHHHHhhcCCCCcEEEE
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAAVTQWVSEINRFTSVGSTKVLI 128 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~l~~qW~~ei~~~~~~~~~~~~~ 128 (723)
.+.|+|.++|+|||..|+.-|..........+ +..-+.-+++-|+| ++|...-.+.+.+.+.+-.+.+..
T Consensus 127 eNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~---------~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~E 197 (1230)
T KOG0952|consen 127 ENMLICAPTGSGKTVLAELCILRTIKEHEEQG---------DIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRE 197 (1230)
T ss_pred CCEEEECCCCCCchHHHHHHHHHHHHhhcccc---------ccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEE
Confidence 78899999999999998655554443211100 01112248899999 788766666665555544889999
Q ss_pred EeCCCCCCCccccCCCCEEEechhhh
Q 004925 129 YHGSNRERSAKQFSEFDFVITTYSII 154 (723)
Q Consensus 129 ~~g~~~~~~~~~~~~~~ivi~t~~~l 154 (723)
++|+......+ ..+.+|++||++..
T Consensus 198 LTGD~ql~~te-i~~tqiiVTTPEKw 222 (1230)
T KOG0952|consen 198 LTGDTQLTKTE-IADTQIIVTTPEKW 222 (1230)
T ss_pred ecCcchhhHHH-HHhcCEEEecccce
Confidence 99988776666 78899999999975
No 110
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.48 E-value=2.7e-13 Score=124.11 Aligned_cols=138 Identities=22% Similarity=0.214 Sum_probs=98.4
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechh-hHHHHHHHHHhhcCCCCcEEEE
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVA-AVTQWVSEINRFTSVGSTKVLI 128 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~-l~~qW~~ei~~~~~~~~~~~~~ 128 (723)
+++++.+++|+|||.+++.++........ .++++|++|.. +..||...+..+... ...+..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~-----------------~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~ 62 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLK-----------------GGQVLVLAPTRELANQVAERLKELFGE-GIKVGY 62 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhccc-----------------CCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEE
Confidence 36789999999999999988887665422 27999999965 667778888888753 455666
Q ss_pred EeCCCCCCCc--cccCCCCEEEechhhhHHhhhhccCCCcccccccCccchhhhhhhhhhhccCCcchhhhhhhHHHHhh
Q 004925 129 YHGSNRERSA--KQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKK 206 (723)
Q Consensus 129 ~~g~~~~~~~--~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (723)
+.+....... .......++++|++.+.......
T Consensus 63 ~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~--------------------------------------------- 97 (144)
T cd00046 63 LIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERL--------------------------------------------- 97 (144)
T ss_pred EecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcC---------------------------------------------
Confidence 6665433321 22467889999999887664321
Q ss_pred hccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccccccCCCcHHH---HHHHhhhcCceEEEeCcC
Q 004925 207 MKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTA---KAVLALESSYKWALSGTP 281 (723)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~---~~l~~l~~~~~l~LTaTP 281 (723)
......+++|||||+|.+.+...... ..........++++||||
T Consensus 98 -------------------------------~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 98 -------------------------------KLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred -------------------------------CcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 02234689999999999988764443 233344678889999998
No 111
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.47 E-value=6.3e-13 Score=137.65 Aligned_cols=103 Identities=15% Similarity=0.205 Sum_probs=91.9
Q ss_pred cCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEE
Q 004925 568 DGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLM 647 (723)
Q Consensus 568 ~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~ 647 (723)
.|| +.||||+..+-+..|.-+|...+++...++..|.+.+|-+.+.+|.+.+++ +|+.|++++.|||++...|||+|
T Consensus 462 yPG-rTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~--VLiaTDVAARGLDIp~V~HVIHY 538 (731)
T KOG0347|consen 462 YPG-RTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSG--VLIATDVAARGLDIPGVQHVIHY 538 (731)
T ss_pred cCC-ceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCe--EEEeehhhhccCCCCCcceEEEe
Confidence 354 899999999999999999999999999999999999999999999985333 45566999999999999999999
Q ss_pred CCCCChhhHHHHHHhhhhcCCcccEEE
Q 004925 648 DPWWNPAVEQQAQDRIHRIGQYKPIRI 674 (723)
Q Consensus 648 d~~wn~~~~~Q~iGRi~R~Gq~~~V~v 674 (723)
.-|-+...|.+|-||.-|-+.. .|.+
T Consensus 539 qVPrtseiYVHRSGRTARA~~~-Gvsv 564 (731)
T KOG0347|consen 539 QVPRTSEIYVHRSGRTARANSE-GVSV 564 (731)
T ss_pred ecCCccceeEecccccccccCC-CeEE
Confidence 9999999999999999998754 3444
No 112
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.46 E-value=9.9e-11 Score=132.14 Aligned_cols=132 Identities=16% Similarity=0.166 Sum_probs=107.9
Q ss_pred chHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 004925 551 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 630 (723)
Q Consensus 551 s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~ 630 (723)
..++..+++.|..+. ..+.++|||+.....++.|...|...|+++..++|+++..+|..+++.|..+ .+.|+| ++.
T Consensus 425 ~~qi~~Ll~eI~~~~--~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G-~i~VLV-~t~ 500 (655)
T TIGR00631 425 DGQVDDLLSEIRQRV--ARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLG-EFDVLV-GIN 500 (655)
T ss_pred cchHHHHHHHHHHHH--cCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcC-CceEEE-EcC
Confidence 457778888888774 4568999999999999999999999999999999999999999999999875 677654 569
Q ss_pred CCcccccccccCEEEEEC-----CCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCC--HHHHHHH
Q 004925 631 AGGVALNLTVASHVFLMD-----PWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENT--IEERILK 689 (723)
Q Consensus 631 ~~~eGlnL~~a~~vI~~d-----~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t--~ee~~~~ 689 (723)
.+++|++++.++.||++| .+-+...+.|++||++|.. . . .++.|+...| +...+.+
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~-G-~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-N-G-KVIMYADKITDSMQKAIEE 563 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-C-C-EEEEEEcCCCHHHHHHHHH
Confidence 999999999999999999 4668889999999999963 2 2 2444454443 4444444
No 113
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.7e-12 Score=129.84 Aligned_cols=120 Identities=17% Similarity=0.251 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 632 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~ 632 (723)
|+..+..+.+ .-+..+||++.+.-+..|...|..+|+++..++|.+.+.+|..+.+.|..+ ..+||| ++...
T Consensus 252 k~~~l~dl~~------~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~g-ssrvlI-ttdl~ 323 (397)
T KOG0327|consen 252 KLDTLCDLYR------RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSG-SSRVLI-TTDLL 323 (397)
T ss_pred cccHHHHHHH------hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcC-CceEEe-ecccc
Confidence 6777776665 224779999999999999999999999999999999999999999999986 677655 66999
Q ss_pred cccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCC
Q 004925 633 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENT 682 (723)
Q Consensus 633 ~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t 682 (723)
+.|+|++.++.||+|+.|-+...+..|+||.+|+|.+- ...+++++.+
T Consensus 324 argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg--~~in~v~~~d 371 (397)
T KOG0327|consen 324 ARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKG--VAINFVTEED 371 (397)
T ss_pred ccccchhhcceeeeeccccchhhhhhhcccccccCCCc--eeeeeehHhh
Confidence 99999999999999999999999999999999999773 3345666554
No 114
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.46 E-value=5.7e-12 Score=148.62 Aligned_cols=122 Identities=14% Similarity=0.161 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCC---CeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 004925 554 IEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSG---VNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 630 (723)
Q Consensus 554 l~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g---~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~ 630 (723)
+..+...|..+... ...++|||......++.+.+.|...+ +.+..++|+++.++|..+++.+ +..+ +|++|+
T Consensus 264 ~~~i~~~I~~l~~~-~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~rk-IVLATN 338 (1283)
T TIGR01967 264 LEAILDAVDELFAE-GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SGRR-IVLATN 338 (1283)
T ss_pred HHHHHHHHHHHHhh-CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CCce-EEEecc
Confidence 34444445444433 34589999999999999999998874 4578899999999998886554 2334 566789
Q ss_pred CCcccccccccCEEEEECCC-----------------C-ChhhHHHHHHhhhhcCCcccEEEEEEEeCCCH
Q 004925 631 AGGVALNLTVASHVFLMDPW-----------------W-NPAVEQQAQDRIHRIGQYKPIRIVRFLIENTI 683 (723)
Q Consensus 631 ~~~eGlnL~~a~~vI~~d~~-----------------w-n~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ 683 (723)
+++.||++...++||.++.+ | +...+.||.||++|.| +-..|+|+++...
T Consensus 339 IAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~ 406 (1283)
T TIGR01967 339 VAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDF 406 (1283)
T ss_pred HHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHH
Confidence 99999999999999987632 2 4468899999999987 4557888876544
No 115
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.45 E-value=7.4e-11 Score=122.59 Aligned_cols=135 Identities=16% Similarity=0.145 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 632 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~ 632 (723)
-++-|+..|+... ..+++++|-+=....++.|.++|.+.|+++..+|+.+..-+|..+|...+.+ .+.| |+....+
T Consensus 431 QvdDL~~EI~~r~--~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G-~~Dv-LVGINLL 506 (663)
T COG0556 431 QVDDLLSEIRKRV--AKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLG-EFDV-LVGINLL 506 (663)
T ss_pred cHHHHHHHHHHHH--hcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcC-CccE-EEeehhh
Confidence 3455555555543 3568999999999999999999999999999999999999999999999976 6665 5578999
Q ss_pred cccccccccCEEEEECCCC-----ChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHH
Q 004925 633 GVALNLTVASHVFLMDPWW-----NPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQE 692 (723)
Q Consensus 633 ~eGlnL~~a~~vI~~d~~w-----n~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~ 692 (723)
-||||++.++.|.++|..- +...++|.|||+-|--.- .|..|-=...++++..|-....
T Consensus 507 REGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~G-kvIlYAD~iT~sM~~Ai~ET~R 570 (663)
T COG0556 507 REGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG-KVILYADKITDSMQKAIDETER 570 (663)
T ss_pred hccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCC-eEEEEchhhhHHHHHHHHHHHH
Confidence 9999999999999999873 668999999999993322 2444433334566666655433
No 116
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.42 E-value=1.1e-11 Score=139.29 Aligned_cols=119 Identities=13% Similarity=0.121 Sum_probs=103.3
Q ss_pred cchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEec
Q 004925 550 SSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 629 (723)
Q Consensus 550 ~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~ 629 (723)
...|..++++.+..+ ...+..|||||.+....+.|...|...|++...+++.++..++..+..+|+.+. ++++|
T Consensus 431 ~~~K~~Aii~ei~~~--~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~----VtIAT 504 (908)
T PRK13107 431 ADEKYQAIIKDIKDC--RERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA----VTIAT 504 (908)
T ss_pred HHHHHHHHHHHHHHH--HHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc----EEEec
Confidence 357999999999887 456789999999999999999999999999999999999999999999999864 55567
Q ss_pred CCCccccccc-------------------------------------ccCEEEEECCCCChhhHHHHHHhhhhcCCcccE
Q 004925 630 KAGGVALNLT-------------------------------------VASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPI 672 (723)
Q Consensus 630 ~~~~eGlnL~-------------------------------------~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V 672 (723)
+.+|.|+|+. +.=|||.-+.+-|-....|..||++|+|..-.-
T Consensus 505 nmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss 584 (908)
T PRK13107 505 NMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSS 584 (908)
T ss_pred CCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCce
Confidence 9999999966 233788888999999999999999999987554
Q ss_pred EE
Q 004925 673 RI 674 (723)
Q Consensus 673 ~v 674 (723)
..
T Consensus 585 ~f 586 (908)
T PRK13107 585 RF 586 (908)
T ss_pred eE
Confidence 44
No 117
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.42 E-value=9.9e-12 Score=139.13 Aligned_cols=124 Identities=22% Similarity=0.211 Sum_probs=109.0
Q ss_pred cchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEec
Q 004925 550 SSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 629 (723)
Q Consensus 550 ~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~ 629 (723)
.+.|+..|.++|.++.. ..++|||++.-..++.|.+-|.+.|+.+..++|+.++.+|...+..|.++ .+.+ |+.|
T Consensus 596 e~eKf~kL~eLl~e~~e---~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~-~~~L-LvaT 670 (997)
T KOG0334|consen 596 ENEKFLKLLELLGERYE---DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNG-VVNL-LVAT 670 (997)
T ss_pred chHHHHHHHHHHHHHhh---cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhcc-CceE-EEeh
Confidence 36799999999998853 56999999999999999999999999999999999999999999999975 5554 5556
Q ss_pred CCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeC
Q 004925 630 KAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIE 680 (723)
Q Consensus 630 ~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~ 680 (723)
++++.|||+..-..||+||.|-....+..|.||..|.|.+. .-|.|+..
T Consensus 671 svvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 671 SVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred hhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 89999999999999999999988899999999999999876 44445655
No 118
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.42 E-value=3.6e-12 Score=146.25 Aligned_cols=109 Identities=13% Similarity=0.096 Sum_probs=99.4
Q ss_pred hcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEE
Q 004925 567 RDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL 646 (723)
Q Consensus 567 ~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~ 646 (723)
..+++-.||||..+...+.+...|+..|+....++.+++..+|+.+-.+|..+ .++|++ .|=++|.|||-..+..||+
T Consensus 482 ~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~-~~~Viv-ATVAFGMGIdK~DVR~ViH 559 (941)
T KOG0351|consen 482 RHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSD-KIRVIV-ATVAFGMGIDKPDVRFVIH 559 (941)
T ss_pred cCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcC-CCeEEE-EEeeccCCCCCCceeEEEE
Confidence 45777899999999999999999999999999999999999999999999987 677655 5589999999999999999
Q ss_pred ECCCCChhhHHHHHHhhhhcCCcccEEEEEE
Q 004925 647 MDPWWNPAVEQQAQDRIHRIGQYKPIRIVRF 677 (723)
Q Consensus 647 ~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l 677 (723)
|..|-+...+-|-+||++|-|+...++.|+=
T Consensus 560 ~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~ 590 (941)
T KOG0351|consen 560 YSLPKSFEGYYQEAGRAGRDGLPSSCVLLYG 590 (941)
T ss_pred CCCchhHHHHHHhccccCcCCCcceeEEecc
Confidence 9999999999999999999999877766543
No 119
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.42 E-value=6e-13 Score=109.30 Aligned_cols=81 Identities=23% Similarity=0.365 Sum_probs=74.2
Q ss_pred HHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEECCCCChhhHHHHHHhhh
Q 004925 585 LINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIH 664 (723)
Q Consensus 585 ~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~ 664 (723)
.++.+|+..++.+..++|+++.++|..+++.|+++ .. .+|+++.++++|+|++.+++||+++++|++..+.|++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~-~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNG-KI-KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcC-CC-eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 46788888899999999999999999999999976 34 46667899999999999999999999999999999999999
Q ss_pred hcC
Q 004925 665 RIG 667 (723)
Q Consensus 665 R~G 667 (723)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 987
No 120
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.40 E-value=4.9e-11 Score=140.36 Aligned_cols=121 Identities=13% Similarity=0.151 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCe---EEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 004925 555 EALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVN---CVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 631 (723)
Q Consensus 555 ~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~---~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~ 631 (723)
..++..+..+. ..+..++|||+.....++.+.+.|+..+++ +..++|++++++|..+++.+ +..+ +|++|++
T Consensus 272 ~~ll~~V~~l~-~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~---g~rk-IIVATNI 346 (1294)
T PRK11131 272 QAIFDAVDELG-REGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH---SGRR-IVLATNV 346 (1294)
T ss_pred HHHHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc---CCee-EEEeccH
Confidence 33334443332 234568999999999999999999988765 66789999999999887753 3445 5667799
Q ss_pred CcccccccccCEEEEEC---------------CCC---ChhhHHHHHHhhhhcCCcccEEEEEEEeCCCH
Q 004925 632 GGVALNLTVASHVFLMD---------------PWW---NPAVEQQAQDRIHRIGQYKPIRIVRFLIENTI 683 (723)
Q Consensus 632 ~~eGlnL~~a~~vI~~d---------------~~w---n~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ 683 (723)
++.||++++.++||.++ ++- +...+.||.||++|.+ +-..|+|+++...
T Consensus 347 AEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte~d~ 413 (1294)
T PRK11131 347 AETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSEDDF 413 (1294)
T ss_pred HhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCHHHH
Confidence 99999999999999874 232 3367889999999973 4556788876544
No 121
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.38 E-value=1e-09 Score=125.03 Aligned_cols=112 Identities=16% Similarity=0.171 Sum_probs=99.0
Q ss_pred chHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 004925 551 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 630 (723)
Q Consensus 551 s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~ 630 (723)
..++..+++.|..+. ..+.++||||.....++.|...|...|+++..++|+++..+|..++..|..+ ...++ +++.
T Consensus 429 ~~q~~~L~~~L~~~~--~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g-~i~vl-V~t~ 504 (652)
T PRK05298 429 KGQVDDLLSEIRKRV--AKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLG-EFDVL-VGIN 504 (652)
T ss_pred cccHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcC-CceEE-EEeC
Confidence 346788888888875 3568999999999999999999999999999999999999999999999875 66655 4669
Q ss_pred CCcccccccccCEEEEECC-----CCChhhHHHHHHhhhhc
Q 004925 631 AGGVALNLTVASHVFLMDP-----WWNPAVEQQAQDRIHRI 666 (723)
Q Consensus 631 ~~~eGlnL~~a~~vI~~d~-----~wn~~~~~Q~iGRi~R~ 666 (723)
.+++|++++.++.||++|. +-++..+.|++||++|.
T Consensus 505 ~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~ 545 (652)
T PRK05298 505 LLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 (652)
T ss_pred HHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC
Confidence 9999999999999999986 45889999999999994
No 122
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.35 E-value=5.8e-12 Score=123.36 Aligned_cols=111 Identities=14% Similarity=0.078 Sum_probs=80.5
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHH-HhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hh
Q 004925 29 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIAL-VLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VA 106 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~ 106 (723)
.++++|.+++..+.+. ++++++.++|+|||.+.+.. +......... ....++|++| ..
T Consensus 21 ~~~~~Q~~~~~~~~~~-----~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~---------------~~~~viii~p~~~ 80 (203)
T cd00268 21 KPTPIQARAIPPLLSG-----RDVIGQAQTGSGKTAAFLIPILEKLDPSPKK---------------DGPQALILAPTRE 80 (203)
T ss_pred CCCHHHHHHHHHHhcC-----CcEEEECCCCCcHHHHHHHHHHHHHHhhccc---------------CCceEEEEcCCHH
Confidence 5899999999988773 78999999999999985433 3332222100 1157899999 67
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc-ccc-CCCCEEEechhhhHHhhh
Q 004925 107 AVTQWVSEINRFTSVGSTKVLIYHGSNRERSA-KQF-SEFDFVITTYSIIEADYR 159 (723)
Q Consensus 107 l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~-~~~-~~~~ivi~t~~~l~~~~~ 159 (723)
|+.||...+..+.......+..++|....... ..+ ...+++++|.+.+...+.
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~ 135 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLE 135 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHH
Confidence 89999999999877667778888886543221 222 378899999998876543
No 123
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.33 E-value=4e-11 Score=120.74 Aligned_cols=109 Identities=15% Similarity=0.174 Sum_probs=96.5
Q ss_pred eEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEECCCC
Q 004925 572 KGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWW 651 (723)
Q Consensus 572 KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~w 651 (723)
-.||||..++..+.++-.|...|++...++.+....+|..+.+.|-++ +.- +|+.|.++|.|+|=+++..||+.+++-
T Consensus 257 CGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~-~~P-vI~AT~SFGMGVDKp~VRFViHW~~~q 334 (641)
T KOG0352|consen 257 CGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNN-EIP-VIAATVSFGMGVDKPDVRFVIHWSPSQ 334 (641)
T ss_pred ceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcC-CCC-EEEEEeccccccCCcceeEEEecCchh
Confidence 469999999999999999999999999999999999999999999876 444 566779999999999999999999999
Q ss_pred ChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHH
Q 004925 652 NPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIE 684 (723)
Q Consensus 652 n~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~e 684 (723)
|..-+-|--||++|-|-..-+++| +.++..+
T Consensus 335 n~AgYYQESGRAGRDGk~SyCRLY--YsR~D~~ 365 (641)
T KOG0352|consen 335 NLAGYYQESGRAGRDGKRSYCRLY--YSRQDKN 365 (641)
T ss_pred hhHHHHHhccccccCCCccceeee--ecccchH
Confidence 999999999999999977667775 4555444
No 124
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.32 E-value=6.2e-12 Score=119.23 Aligned_cols=107 Identities=20% Similarity=0.256 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hhhHHH
Q 004925 32 RYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAAVTQ 110 (723)
Q Consensus 32 p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~l~~q 110 (723)
|+|.+++..+.+. +..++..++|+|||..++..+........ .+.+++++| ..++.|
T Consensus 2 ~~Q~~~~~~i~~~-----~~~li~aptGsGKT~~~~~~~l~~~~~~~-----------------~~~~lii~P~~~l~~q 59 (169)
T PF00270_consen 2 PLQQEAIEAIISG-----KNVLISAPTGSGKTLAYILPALNRLQEGK-----------------DARVLIIVPTRALAEQ 59 (169)
T ss_dssp HHHHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHHHHHHTTS-----------------SSEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHHcC-----CCEEEECCCCCccHHHHHHHHHhhhccCC-----------------CceEEEEeeccccccc
Confidence 7999999988743 67899999999999998755544332221 148899999 678999
Q ss_pred HHHHHHhhcCCCCcEEEEEeCCCCCC--Ccccc-CCCCEEEechhhhHHhhhh
Q 004925 111 WVSEINRFTSVGSTKVLIYHGSNRER--SAKQF-SEFDFVITTYSIIEADYRK 160 (723)
Q Consensus 111 W~~ei~~~~~~~~~~~~~~~g~~~~~--~~~~~-~~~~ivi~t~~~l~~~~~~ 160 (723)
-.+++.+++.....++..++|..... ....+ .+.+++++|++.+...+..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~ 112 (169)
T PF00270_consen 60 QFERLRKFFSNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISN 112 (169)
T ss_dssp HHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccCcchhhccccc
Confidence 99999999886567888888765422 11222 4689999999999877653
No 125
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.32 E-value=3.3e-12 Score=128.45 Aligned_cols=124 Identities=16% Similarity=0.154 Sum_probs=106.5
Q ss_pred chHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 004925 551 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 630 (723)
Q Consensus 551 s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~ 630 (723)
..|..+|+.++..... +.+.+||+.....++++...|...|+.+..|+|++.+..|..-+.+|... ... +++.|+
T Consensus 245 a~K~aaLl~il~~~~~---~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~-k~~-~lvvTd 319 (529)
T KOG0337|consen 245 AEKEAALLSILGGRIK---DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGR-KTS-ILVVTD 319 (529)
T ss_pred HHHHHHHHHHHhcccc---ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCC-ccc-eEEEeh
Confidence 4588888888876642 45789999999999999999999999999999999999999999999865 444 445569
Q ss_pred CCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCC
Q 004925 631 AGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 681 (723)
Q Consensus 631 ~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~ 681 (723)
+++.|++.+-.+.||+||.|-.+..+..|.||+.|-|.+ -..|-+|+.+
T Consensus 320 vaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrt--g~aYs~V~~~ 368 (529)
T KOG0337|consen 320 VAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRT--GRAYSLVAST 368 (529)
T ss_pred hhhccCCCccccccccccCCCCCceEEEEecchhhcccc--ceEEEEEecc
Confidence 999999999999999999999999999999999999977 3445566554
No 126
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.31 E-value=7.4e-11 Score=116.79 Aligned_cols=109 Identities=10% Similarity=0.055 Sum_probs=95.4
Q ss_pred cCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEE
Q 004925 568 DGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLM 647 (723)
Q Consensus 568 ~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~ 647 (723)
-.+...||||-.....+.++..|+.+|+....++..+.+++|..+-+-|-.+ .++|++++ -+++.|||-+.++.||+-
T Consensus 315 f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~-eiqvivat-vafgmgidkpdvrfvihh 392 (695)
T KOG0353|consen 315 FAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAG-EIQVIVAT-VAFGMGIDKPDVRFVIHH 392 (695)
T ss_pred cCCCcceEEEeccccHHHHHHHHHhcCccccccccccCcccccccccccccc-ceEEEEEE-eeecccCCCCCeeEEEec
Confidence 3556779999999999999999999999999999999999999988888876 88887755 889999999999999999
Q ss_pred CCCCChhhHHH-------------------------------------------HHHhhhhcCCcccEEEEEEE
Q 004925 648 DPWWNPAVEQQ-------------------------------------------AQDRIHRIGQYKPIRIVRFL 678 (723)
Q Consensus 648 d~~wn~~~~~Q-------------------------------------------~iGRi~R~Gq~~~V~v~~l~ 678 (723)
+.|-+...+-| --||++|-|++-.+.+|+=.
T Consensus 393 sl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~ 466 (695)
T KOG0353|consen 393 SLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGF 466 (695)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEech
Confidence 99999999999 46788888888887776544
No 127
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.26 E-value=4.7e-10 Score=129.64 Aligned_cols=125 Identities=11% Similarity=0.058 Sum_probs=94.3
Q ss_pred cCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcC---CCCceEEEEecCCCcccccccccCEE
Q 004925 568 DGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE---DPDCKIFLMSLKAGGVALNLTVASHV 644 (723)
Q Consensus 568 ~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~---~~~~~vll~s~~~~~eGlnL~~a~~v 644 (723)
..+.|++|-++....+..++..|+..+.+++.+||.++..+|...++...+ .+... ++++|++...|+|+. .+.+
T Consensus 438 ~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~-IvVaTQVIEagvDid-fd~m 515 (733)
T COG1203 438 KEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGF-IVVATQVIEAGVDID-FDVL 515 (733)
T ss_pred ccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCe-EEEEeeEEEEEeccc-cCee
Confidence 356799999999999999999999998789999999999999988886552 33444 556779999999988 4444
Q ss_pred EEECCCCChhhHHHHHHhhhhcCCc--ccEEEEEEEeCCCHHHHHHHHHHHHHH
Q 004925 645 FLMDPWWNPAVEQQAQDRIHRIGQY--KPIRIVRFLIENTIEERILKLQEKKKL 696 (723)
Q Consensus 645 I~~d~~wn~~~~~Q~iGRi~R~Gq~--~~V~v~~l~~~~t~ee~~~~~~~~K~~ 696 (723)
|- |+ -....++||.||++|.|-+ ..++++...-......+.+.....+..
T Consensus 516 IT-e~-aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 567 (733)
T COG1203 516 IT-EL-APIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLK 567 (733)
T ss_pred ee-cC-CCHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhc
Confidence 43 22 2468899999999999944 447776666555566655555444433
No 128
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=99.26 E-value=5.8e-10 Score=120.08 Aligned_cols=92 Identities=20% Similarity=0.256 Sum_probs=72.5
Q ss_pred HHHhhcCCCCceEEEEecCCCcccccccccCEE--------EEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCH
Q 004925 612 AINRFTEDPDCKIFLMSLKAGGVALNLTVASHV--------FLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTI 683 (723)
Q Consensus 612 ~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~v--------I~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ 683 (723)
..++|-++ .-.|-|+| .+++.||.||+-.+| |-+++||+....+|..||.+|-+|...-..+.|+.+=-=
T Consensus 849 EKqrFM~G-eK~vAIIS-EAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAG 926 (1300)
T KOG1513|consen 849 EKQRFMDG-EKLVAIIS-EAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAG 926 (1300)
T ss_pred HHhhhccc-cceeeeee-hhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhcc
Confidence 34677665 55566667 888999999965544 679999999999999999999999987777777877666
Q ss_pred HHHHHHHHHHHHHHhhcccCCC
Q 004925 684 EERILKLQEKKKLVFEGTVGGS 705 (723)
Q Consensus 684 ee~~~~~~~~K~~~~~~~~~~~ 705 (723)
|-+.-.+.+++.....++--|+
T Consensus 927 ErRFAS~VAKRLESLGALThGD 948 (1300)
T KOG1513|consen 927 ERRFASIVAKRLESLGALTHGD 948 (1300)
T ss_pred chHHHHHHHHHHHhhccccccc
Confidence 7777888888888777776554
No 129
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.25 E-value=2.9e-09 Score=120.59 Aligned_cols=117 Identities=11% Similarity=0.108 Sum_probs=98.8
Q ss_pred cchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEec
Q 004925 550 SSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 629 (723)
Q Consensus 550 ~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~ 629 (723)
...|+.++++.|... ...+..+||||.+....+.|.+.|...|++...+++ .+.+|+..+.+|... ...| +++|
T Consensus 580 ~~eK~~Ali~~I~~~--~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~-~g~V-tIAT 653 (1025)
T PRK12900 580 RREKYNAIVLKVEEL--QKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQ-KGAV-TIAT 653 (1025)
T ss_pred HHHHHHHHHHHHHHH--hhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCC-CCeE-EEec
Confidence 346999999999876 346789999999999999999999999999999997 578999999999864 4454 5566
Q ss_pred CCCcccccccc---cC-----EEEEECCCCChhhHHHHHHhhhhcCCcccE
Q 004925 630 KAGGVALNLTV---AS-----HVFLMDPWWNPAVEQQAQDRIHRIGQYKPI 672 (723)
Q Consensus 630 ~~~~eGlnL~~---a~-----~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V 672 (723)
+.+|.|+|+.- +. +||..+.+-+...+.|++||.+|.|..-..
T Consensus 654 NMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS 704 (1025)
T PRK12900 654 NMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGES 704 (1025)
T ss_pred cCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcce
Confidence 99999999883 32 348888998999999999999999987554
No 130
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=99.22 E-value=1.1e-10 Score=115.78 Aligned_cols=174 Identities=21% Similarity=0.181 Sum_probs=113.3
Q ss_pred cCChHHHHHHHHHHHHhccC-----CCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEE
Q 004925 28 TPLLRYQKEWLAWALKQEES-----AIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVI 102 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~-----~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv 102 (723)
..|-.-|++++.+.-++... .-.|.+|+|.+|.||-.++.++|......+. .+++.|-
T Consensus 36 g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr-----------------~r~vwvS 98 (303)
T PF13872_consen 36 GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR-----------------KRAVWVS 98 (303)
T ss_pred ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC-----------------CceEEEE
Confidence 36778999999998776652 2278899999999999999888876544333 1577777
Q ss_pred echhhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccccCCCCEEEechhhhHHhhhh---ccCCCcccccccCccchhh
Q 004925 103 CPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRK---HVMPPKQKCQYCGKSFYQK 179 (723)
Q Consensus 103 ~P~~l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ivi~t~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 179 (723)
+...|..--..+|...... .+.+..+...+.... .-....|+++||++|...... ...+..+-.+|||+.|.
T Consensus 99 ~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~~~~--~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfd-- 173 (303)
T PF13872_consen 99 VSNDLKYDAERDLRDIGAD-NIPVHPLNKFKYGDI--IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFD-- 173 (303)
T ss_pred CChhhhhHHHHHHHHhCCC-cccceechhhccCcC--CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCC--
Confidence 7788887777777765442 444554444322211 113557999999999877431 11222222334433321
Q ss_pred hhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccccccCCC
Q 004925 180 KLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRR 259 (723)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~kn~~ 259 (723)
.+||+||||+.+|..
T Consensus 174 -----------------------------------------------------------------gvivfDEcH~akn~~ 188 (303)
T PF13872_consen 174 -----------------------------------------------------------------GVIVFDECHKAKNLS 188 (303)
T ss_pred -----------------------------------------------------------------ceEEeccchhcCCCC
Confidence 589999999999876
Q ss_pred c------HHHHHHHhhh----cCceEEEeCcCCCCchhhH
Q 004925 260 S------NTAKAVLALE----SSYKWALSGTPLQNRVGEL 289 (723)
Q Consensus 260 s------~~~~~l~~l~----~~~~l~LTaTP~~n~~~dl 289 (723)
+ +...++..++ .-+.+-.|||.... |..+
T Consensus 189 ~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase-p~Nm 227 (303)
T PF13872_consen 189 SGSKKPSKTGIAVLELQNRLPNARVVYASATGASE-PRNM 227 (303)
T ss_pred ccCccccHHHHHHHHHHHhCCCCcEEEecccccCC-Ccee
Confidence 4 5566666552 33567799999743 3444
No 131
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=2.2e-09 Score=118.25 Aligned_cols=130 Identities=15% Similarity=0.153 Sum_probs=97.9
Q ss_pred cchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEec
Q 004925 550 SSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 629 (723)
Q Consensus 550 ~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~ 629 (723)
...|..++++.+... ...+..|||.+.+....+.|...|.+.|++...++.... ++-..+|.+= + ...-+.++|
T Consensus 409 ~~~k~~Aii~ei~~~--~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~A--G-~~gaVTIAT 482 (764)
T PRK12326 409 AAEKNDAIVEHIAEV--HETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEA--G-KYGAVTVST 482 (764)
T ss_pred HHHHHHHHHHHHHHH--HHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhc--C-CCCcEEEEe
Confidence 346899999999887 457789999999999999999999999999999988643 2223344332 2 223356677
Q ss_pred CCCccccccc---------------ccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHH
Q 004925 630 KAGGVALNLT---------------VASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKL 690 (723)
Q Consensus 630 ~~~~eGlnL~---------------~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~ 690 (723)
..+|.|.|+. +.=|||--+.+-|.....|..||++|+|..-....| + |+|+.++.+
T Consensus 483 NMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~-l----SleDdl~~~ 553 (764)
T PRK12326 483 QMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF-V----SLEDDVVAA 553 (764)
T ss_pred cCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE-E----EcchhHHHh
Confidence 9999998866 334788888999999999999999999988655443 3 344445544
No 132
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.18 E-value=4.3e-09 Score=120.63 Aligned_cols=165 Identities=17% Similarity=0.118 Sum_probs=115.3
Q ss_pred CccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-
Q 004925 26 LITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP- 104 (723)
Q Consensus 26 ~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P- 104 (723)
+...|-|+|++++.-+.+. .+.++|.++|+|||+++-..+...+... .++.-..|
T Consensus 116 ~~F~LD~fQ~~a~~~Ler~-----esVlV~ApTssGKTvVaeyAi~~al~~~-------------------qrviYTsPI 171 (1041)
T COG4581 116 YPFELDPFQQEAIAILERG-----ESVLVCAPTSSGKTVVAEYAIALALRDG-------------------QRVIYTSPI 171 (1041)
T ss_pred CCCCcCHHHHHHHHHHhCC-----CcEEEEccCCCCcchHHHHHHHHHHHcC-------------------CceEeccch
Confidence 4558999999999887665 7889999999999999876666655543 35788899
Q ss_pred hhhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccccCCCCEEEechhhhHHhhhhccCCCcccccccCccchhhhhhhh
Q 004925 105 VAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVH 184 (723)
Q Consensus 105 ~~l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (723)
++|.+|=-.++..-+++-.-.+.+++|+.... .++.++++|-+.|++-+....
T Consensus 172 KALsNQKyrdl~~~fgdv~~~vGL~TGDv~IN-----~~A~clvMTTEILRnMlyrg~---------------------- 224 (1041)
T COG4581 172 KALSNQKYRDLLAKFGDVADMVGLMTGDVSIN-----PDAPCLVMTTEILRNMLYRGS---------------------- 224 (1041)
T ss_pred hhhhhhHHHHHHHHhhhhhhhccceecceeeC-----CCCceEEeeHHHHHHHhccCc----------------------
Confidence 89999999998776652122356677765443 356788888899998865310
Q ss_pred hhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccccccCCC-cHHH
Q 004925 185 LKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRR-SNTA 263 (723)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~kn~~-s~~~ 263 (723)
-.......||+||+|++.... .-.+
T Consensus 225 ------------------------------------------------------~~~~~i~~ViFDEvHyi~D~eRG~VW 250 (1041)
T COG4581 225 ------------------------------------------------------ESLRDIEWVVFDEVHYIGDRERGVVW 250 (1041)
T ss_pred ------------------------------------------------------ccccccceEEEEeeeeccccccchhH
Confidence 111234669999999997654 2234
Q ss_pred HHH-HhhhcC-ceEEEeCcCCCCchhhHHHHHHHhc
Q 004925 264 KAV-LALESS-YKWALSGTPLQNRVGELYSLVRFLQ 297 (723)
Q Consensus 264 ~~l-~~l~~~-~~l~LTaTP~~n~~~dl~~~l~lL~ 297 (723)
.-+ ..+... ..++||||- .++.++-..+..+.
T Consensus 251 EE~Ii~lP~~v~~v~LSATv--~N~~EF~~Wi~~~~ 284 (1041)
T COG4581 251 EEVIILLPDHVRFVFLSATV--PNAEEFAEWIQRVH 284 (1041)
T ss_pred HHHHHhcCCCCcEEEEeCCC--CCHHHHHHHHHhcc
Confidence 433 333443 668899993 24577777777653
No 133
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.18 E-value=2.2e-09 Score=121.34 Aligned_cols=111 Identities=23% Similarity=0.176 Sum_probs=72.3
Q ss_pred ChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCC-CCccCCCCCCCCCCCCCCceEEEec-hhh
Q 004925 30 LLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGT-IGELDASSSSSTGLLGIKATLVICP-VAA 107 (723)
Q Consensus 30 L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~LIv~P-~~l 107 (723)
|.+-|-......+.. -.+.+||.++|+|||-.|+.-+......+.. .+. .+.....++-++| +.|
T Consensus 310 LNrIQS~v~daAl~~----~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs---------~nl~~fKIVYIAPmKaL 376 (1674)
T KOG0951|consen 310 LNRIQSKVYDAALRG----DENMLLCAPTGAGKTNVAVLTILQELGNHLREDGS---------VNLAPFKIVYIAPMKAL 376 (1674)
T ss_pred hhHHHHHHHHHHhcC----cCcEEEeccCCCCchHHHHHHHHHHHhcccccccc---------eecccceEEEEeeHHHH
Confidence 445555444433322 2667899999999999986555443322211 110 0111257788999 899
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccccCCCCEEEechhhh
Q 004925 108 VTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSII 154 (723)
Q Consensus 108 ~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ivi~t~~~l 154 (723)
+..|...|.+++.+-.+.|...+|+..- ....+....++++|.+..
T Consensus 377 vqE~VgsfSkRla~~GI~V~ElTgD~~l-~~~qieeTqVIV~TPEK~ 422 (1674)
T KOG0951|consen 377 VQEMVGSFSKRLAPLGITVLELTGDSQL-GKEQIEETQVIVTTPEKW 422 (1674)
T ss_pred HHHHHHHHHhhccccCcEEEEecccccc-hhhhhhcceeEEeccchh
Confidence 9999999999998767777777776432 234456778999998864
No 134
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.17 E-value=2.5e-09 Score=120.79 Aligned_cols=117 Identities=12% Similarity=0.122 Sum_probs=91.5
Q ss_pred chHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHH-HHHHhhcCCCCceEEEEec
Q 004925 551 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARD-AAINRFTEDPDCKIFLMSL 629 (723)
Q Consensus 551 s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~-~~i~~F~~~~~~~vll~s~ 629 (723)
..|..++++.+... ...+..|||-|.+....+.|...|.+.|++...++.... +++ .+|.+= + ....+.++|
T Consensus 551 ~~k~~ai~~ei~~~--~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~--~~Ea~iia~A--G-~~g~VTIAT 623 (970)
T PRK12899 551 REKYHAIVAEIASI--HRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH--AQEAEIIAGA--G-KLGAVTVAT 623 (970)
T ss_pred HHHHHHHHHHHHHH--HhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh--hhHHHHHHhc--C-CCCcEEEee
Confidence 47899999988887 456678999999999999999999999999988887643 333 333332 2 223356677
Q ss_pred CCCccccccc--------ccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEE
Q 004925 630 KAGGVALNLT--------VASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRI 674 (723)
Q Consensus 630 ~~~~eGlnL~--------~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v 674 (723)
..+|.|.|+. +.=|||.-+.+-|.....|..||++|.|.......
T Consensus 624 NmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f 676 (970)
T PRK12899 624 NMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKF 676 (970)
T ss_pred ccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeE
Confidence 9999998864 33478888899999999999999999998865444
No 135
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=99.12 E-value=4.7e-09 Score=120.14 Aligned_cols=151 Identities=13% Similarity=0.140 Sum_probs=95.6
Q ss_pred CcchHHHHHHHHHHHHHhh-------cCCceEEEEcccHhHHHHHHHHHHhCCC--eEEE-e----------ecCCCH--
Q 004925 549 QSSTKIEALREEIRFMVER-------DGSAKGIVFSQFTSFLDLINYSLHKSGV--NCVQ-L----------VGSMSI-- 606 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~-------~~~~KvIIF~~~~~~~~~l~~~L~~~g~--~~~~-i----------~g~~~~-- 606 (723)
...||...|.++|++.... .++.++||||++.+|...|.++|...++ .... + .|..+.
T Consensus 267 Ee~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~~~~~~~~~~fm~~~l~~y~~~~~~~~k~~ 346 (814)
T TIGR00596 267 EENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTTSNKKRGSRAFLLNKLRWYRKWREETSKLA 346 (814)
T ss_pred ccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhhhhhhh
Confidence 4689999999999987655 4567899999999999999999966222 0000 0 011100
Q ss_pred ---------------------------H--H-----HHHHHHhhcCCCCc--------eEE-------------------
Q 004925 607 ---------------------------P--A-----RDAAINRFTEDPDC--------KIF------------------- 625 (723)
Q Consensus 607 ---------------------------~--~-----r~~~i~~F~~~~~~--------~vl------------------- 625 (723)
. . -+..+.+|..+..- .++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~krrr~rG~s~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 426 (814)
T TIGR00596 347 KEVQSQDTFPENASSNVNKTFRKEQVPTKRRRVRGGSEVAVEKLRNANTNDMQHFEEDHELEEEGDDLEDGPAQEINAAN 426 (814)
T ss_pred HhhhhccccccccccccccccccccccccccccccchhHHHhhhcccccccccccchhhhhhhhhhhhcccccccccccc
Confidence 0 0 01125555432110 011
Q ss_pred ---EEecCCCcccccccc----------------------c----------CEEEEECCCCChhhHHHHHHhhhhcCCcc
Q 004925 626 ---LMSLKAGGVALNLTV----------------------A----------SHVFLMDPWWNPAVEQQAQDRIHRIGQYK 670 (723)
Q Consensus 626 ---l~s~~~~~eGlnL~~----------------------a----------~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~ 670 (723)
.+++..+.+|+|... + ++||+|||.-+..+..|. -|+.|.|..
T Consensus 427 ~~~~~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IEv-yra~r~~r~- 504 (814)
T TIGR00596 427 DSKIFEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLEV-YKASRPLRP- 504 (814)
T ss_pred ccccccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHHH-HHccCCCCC-
Confidence 134566668888776 4 899999998666666661 233344433
Q ss_pred cEEEEEEEeCCCHHHHHHHHHHHH-HHHhhccc
Q 004925 671 PIRIVRFLIENTIEERILKLQEKK-KLVFEGTV 702 (723)
Q Consensus 671 ~V~v~~l~~~~t~ee~~~~~~~~K-~~~~~~~~ 702 (723)
+.||.|++.+|+||.-|....+| +.+++.+.
T Consensus 505 -~rVyfL~y~~S~EEq~yl~sirrEK~AFe~LI 536 (814)
T TIGR00596 505 -LRVYFLYYGGSIEEQRYLTSLRREKDAFTKLI 536 (814)
T ss_pred -cEEEEEEECCcHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999988777666 44455444
No 136
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.11 E-value=6.9e-09 Score=116.32 Aligned_cols=106 Identities=21% Similarity=0.151 Sum_probs=82.0
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hh
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VA 106 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~ 106 (723)
..|-+-|..++..+.... ++....+|.-.+|+|||-.=+.+++..+..+ +-+||+|| -+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~-~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G-------------------kqvLvLVPEI~ 256 (730)
T COG1198 197 LALNQEQQAAVEAILSSL-GGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG-------------------KQVLVLVPEIA 256 (730)
T ss_pred cccCHHHHHHHHHHHHhc-ccccceeEeCCCCCcHHHHHHHHHHHHHHcC-------------------CEEEEEecccc
Confidence 478889999999988775 4447789999999999998888888777654 58899999 47
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc-cc-----cCCCCEEEechhhhHH
Q 004925 107 AVTQWVSEINRFTSVGSTKVLIYHGSNRERSA-KQ-----FSEFDFVITTYSIIEA 156 (723)
Q Consensus 107 l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~-~~-----~~~~~ivi~t~~~l~~ 156 (723)
|.+|-.+.+...|+ .++.++|+....... .. .+...|||-|-+.+-.
T Consensus 257 Ltpq~~~rf~~rFg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~ 309 (730)
T COG1198 257 LTPQLLARFKARFG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFL 309 (730)
T ss_pred chHHHHHHHHHHhC---CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcC
Confidence 99999999999885 667777775544322 11 2667899999888743
No 137
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.07 E-value=1.1e-08 Score=113.02 Aligned_cols=101 Identities=19% Similarity=0.132 Sum_probs=75.2
Q ss_pred ccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-h
Q 004925 27 ITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-V 105 (723)
Q Consensus 27 ~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~ 105 (723)
...|-++|++++..+.+. ...++|..+.+|||++|=..|+...... .+++--.| +
T Consensus 295 pFelD~FQk~Ai~~lerg-----~SVFVAAHTSAGKTvVAEYAialaq~h~-------------------TR~iYTSPIK 350 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHLERG-----DSVFVAAHTSAGKTVVAEYAIALAQKHM-------------------TRTIYTSPIK 350 (1248)
T ss_pred CCCccHHHHHHHHHHHcC-----CeEEEEecCCCCcchHHHHHHHHHHhhc-------------------cceEecchhh
Confidence 347778999999987765 6778999999999999743333322221 36677778 7
Q ss_pred hhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccccCCCCEEEechhhhHHhhhh
Q 004925 106 AAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRK 160 (723)
Q Consensus 106 ~l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ivi~t~~~l~~~~~~ 160 (723)
+|-+|=.++++.-+++ +.+++|+..... ++..+|+|-++|++.+..
T Consensus 351 ALSNQKfRDFk~tF~D----vgLlTGDvqinP-----eAsCLIMTTEILRsMLYr 396 (1248)
T KOG0947|consen 351 ALSNQKFRDFKETFGD----VGLLTGDVQINP-----EASCLIMTTEILRSMLYR 396 (1248)
T ss_pred hhccchHHHHHHhccc----cceeecceeeCC-----CcceEeehHHHHHHHHhc
Confidence 8889999999888763 227777654433 578999999999988654
No 138
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.04 E-value=7.3e-09 Score=117.03 Aligned_cols=120 Identities=15% Similarity=0.134 Sum_probs=93.2
Q ss_pred cchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEec
Q 004925 550 SSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 629 (723)
Q Consensus 550 ~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~ 629 (723)
...|..++++.+..+ ...+..|||-+.+....+.|.+.|.+.|++.-.++.... +++..|-+ +++ ....+.++|
T Consensus 431 ~~eK~~Ai~~ei~~~--~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~--~~EA~IIa-~AG-~~GaVTIAT 504 (913)
T PRK13103 431 AEEKYAAIITDIKEC--MALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH--EKEAEIIA-QAG-RPGALTIAT 504 (913)
T ss_pred HHHHHHHHHHHHHHH--HhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc--hhHHHHHH-cCC-CCCcEEEec
Confidence 357999999999988 457789999999999999999999999999877776543 34444333 223 233355677
Q ss_pred CCCccccccc-------------------------------------ccCEEEEECCCCChhhHHHHHHhhhhcCCcccE
Q 004925 630 KAGGVALNLT-------------------------------------VASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPI 672 (723)
Q Consensus 630 ~~~~eGlnL~-------------------------------------~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V 672 (723)
..+|.|.|+. +.=|||.-+.+-|-....|..||++|+|.....
T Consensus 505 NMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS 584 (913)
T PRK13103 505 NMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSS 584 (913)
T ss_pred cCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 9999999874 334788889999999999999999999988655
Q ss_pred EEE
Q 004925 673 RIV 675 (723)
Q Consensus 673 ~v~ 675 (723)
..|
T Consensus 585 ~f~ 587 (913)
T PRK13103 585 RFY 587 (913)
T ss_pred EEE
Confidence 443
No 139
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.03 E-value=5.7e-08 Score=108.84 Aligned_cols=88 Identities=14% Similarity=0.214 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHHHhhcCCceEEEEccc---HhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEe
Q 004925 552 TKIEALREEIRFMVERDGSAKGIVFSQF---TSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMS 628 (723)
Q Consensus 552 ~Kl~~l~~~l~~~~~~~~~~KvIIF~~~---~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s 628 (723)
+-+..++++|+.+ + .-.|||++. .+.++.|+.+|+.+|+++..++.. +...++.|..+ .+.++|..
T Consensus 322 ~~~e~~~elvk~l---G--~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~G-eidvLVGv 390 (1187)
T COG1110 322 ESLEKVVELVKKL---G--DGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEG-EVDVLVGV 390 (1187)
T ss_pred ccHHHHHHHHHHh---C--CCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccC-ceeEEEEe
Confidence 3456666677655 2 256999999 899999999999999999999873 36789999986 88877744
Q ss_pred c---CCCccccccc-ccCEEEEECCC
Q 004925 629 L---KAGGVALNLT-VASHVFLMDPW 650 (723)
Q Consensus 629 ~---~~~~eGlnL~-~a~~vI~~d~~ 650 (723)
. .++-.||||+ ...++||+..|
T Consensus 391 AsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 391 ASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred cccccceeecCCchhheeEEEEecCC
Confidence 3 3445799998 79999999998
No 140
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.95 E-value=2.8e-07 Score=109.10 Aligned_cols=114 Identities=15% Similarity=0.147 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHh----CCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 004925 555 EALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK----SGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 630 (723)
Q Consensus 555 ~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~----~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~ 630 (723)
..+.+.|..+....+ .++|||......++.++..|.. .++++ +..+.. ..|.+++++|.++ +..||+ ++.
T Consensus 660 ~~ia~~i~~l~~~~~-g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~-~~~iLl-gt~ 733 (850)
T TIGR01407 660 QEIASYIIEITAITS-PKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNG-EKAILL-GTS 733 (850)
T ss_pred HHHHHHHHHHHHhcC-CCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhC-CCeEEE-Ecc
Confidence 456666666554444 4899999999999999999875 34443 333333 4788999999875 444554 569
Q ss_pred CCccccccccc--CEEEEECCCCC-h-----------------------------hhHHHHHHhhhhcCCcccEEE
Q 004925 631 AGGVALNLTVA--SHVFLMDPWWN-P-----------------------------AVEQQAQDRIHRIGQYKPIRI 674 (723)
Q Consensus 631 ~~~eGlnL~~a--~~vI~~d~~wn-~-----------------------------~~~~Q~iGRi~R~Gq~~~V~v 674 (723)
++.||+|++.. ..||+.-.|+- | ..+.|++||+.|-.+.+.+.+
T Consensus 734 sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ 809 (850)
T TIGR01407 734 SFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIV 809 (850)
T ss_pred eeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEE
Confidence 99999999954 45666666642 1 234499999999887776533
No 141
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.90 E-value=1.1e-07 Score=112.15 Aligned_cols=70 Identities=19% Similarity=0.171 Sum_probs=49.1
Q ss_pred HHHHHHHHhh-cCCCCceEEEEecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhc-CC-cccEEEEEEE
Q 004925 607 PARDAAINRF-TEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRI-GQ-YKPIRIVRFL 678 (723)
Q Consensus 607 ~~r~~~i~~F-~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~-Gq-~~~V~v~~l~ 678 (723)
..+.....+| ..++.+.++|+. +-.=+|.|-+..+.+. +|-+--.-.+.||+.|+.|. +. +..-.|+.|+
T Consensus 578 ~~~~~~~~r~~~~~d~~kilIV~-dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~ 650 (962)
T COG0610 578 DEKKDLIKRFKLKDDPLDLLIVV-DMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFR 650 (962)
T ss_pred HHHhhhhhhhcCcCCCCCEEEEE-ccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECc
Confidence 3445566665 455577888887 6666899999776654 56666778899999999994 55 3445555555
No 142
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.89 E-value=1e-07 Score=106.89 Aligned_cols=120 Identities=14% Similarity=0.135 Sum_probs=95.1
Q ss_pred cchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEec
Q 004925 550 SSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 629 (723)
Q Consensus 550 ~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~ 629 (723)
...|..++++.+... ...+..|||.|.+....+.|.+.|.+.|++...++... .+++..|-+ +++ ....+.++|
T Consensus 408 ~~~K~~Aii~ei~~~--~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~--~e~EA~IIa-~AG-~~GaVTIAT 481 (925)
T PRK12903 408 KHAKWKAVVKEVKRV--HKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQ--NAREAEIIA-KAG-QKGAITIAT 481 (925)
T ss_pred HHHHHHHHHHHHHHH--HhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccc--hhhHHHHHH-hCC-CCCeEEEec
Confidence 357999999999887 34678999999999999999999999999999988864 344544444 333 333355677
Q ss_pred CCCcccccccccC--------EEEEECCCCChhhHHHHHHhhhhcCCcccEEEE
Q 004925 630 KAGGVALNLTVAS--------HVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIV 675 (723)
Q Consensus 630 ~~~~eGlnL~~a~--------~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~ 675 (723)
..+|.|.|+.-.. |||..+.+-|-....|..||++|.|.......|
T Consensus 482 NMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 482 NMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred ccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 9999999977433 899999998999999999999999987655443
No 143
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.77 E-value=1.7e-07 Score=104.56 Aligned_cols=109 Identities=23% Similarity=0.215 Sum_probs=71.1
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hhh
Q 004925 29 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAA 107 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~l 107 (723)
+++.+|.+.+.- .+...+ ++.|.+.+++.|||++|=-+++...-... +..+++.| .++
T Consensus 223 ~~fewq~ecls~--~~~~e~-~nliys~Pts~gktlvaeilml~~~l~~r------------------r~~llilp~vsi 281 (1008)
T KOG0950|consen 223 KLFEWQAECLSL--PRLLER-KNLIYSLPTSAGKTLVAEILMLREVLCRR------------------RNVLLILPYVSI 281 (1008)
T ss_pred HHHHHHHHHhcc--hhhhcc-cceEEeCCCccchHHHHHHHHHHHHHHHh------------------hceeEecceeeh
Confidence 556666665531 122223 88999999999999998555544332222 67789999 455
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccccCCCCEEEechhhhHHhhhh
Q 004925 108 VTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRK 160 (723)
Q Consensus 108 ~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ivi~t~~~l~~~~~~ 160 (723)
+..=..++..+..+..+.+-.|+|.. ...+....-.+.|+|.+.-....+.
T Consensus 282 v~Ek~~~l~~~~~~~G~~ve~y~g~~--~p~~~~k~~sv~i~tiEkanslin~ 332 (1008)
T KOG0950|consen 282 VQEKISALSPFSIDLGFPVEEYAGRF--PPEKRRKRESVAIATIEKANSLINS 332 (1008)
T ss_pred hHHHHhhhhhhccccCCcchhhcccC--CCCCcccceeeeeeehHhhHhHHHH
Confidence 55555666777766678888888543 3334446667899998886665543
No 144
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.64 E-value=6.4e-07 Score=97.00 Aligned_cols=101 Identities=14% Similarity=0.099 Sum_probs=70.7
Q ss_pred ccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-h
Q 004925 27 ITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-V 105 (723)
Q Consensus 27 ~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~ 105 (723)
...|-|+|..++.-+-+. ...++...+..|||++|=-.|+..++.. .+++.--| +
T Consensus 127 PF~LDpFQ~~aI~Cidr~-----eSVLVSAHTSAGKTVVAeYAIA~sLr~k-------------------QRVIYTSPIK 182 (1041)
T KOG0948|consen 127 PFTLDPFQSTAIKCIDRG-----ESVLVSAHTSAGKTVVAEYAIAMSLREK-------------------QRVIYTSPIK 182 (1041)
T ss_pred CcccCchHhhhhhhhcCC-----ceEEEEeecCCCcchHHHHHHHHHHHhc-------------------CeEEeeChhh
Confidence 347788998887754333 6788999999999999854444444332 35666667 7
Q ss_pred hhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccccCCCCEEEechhhhHHhhhh
Q 004925 106 AAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRK 160 (723)
Q Consensus 106 ~l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ivi~t~~~l~~~~~~ 160 (723)
+|-+|=-+|+..=|. .|...+|+.... .++..+++|-++|++.+..
T Consensus 183 ALSNQKYREl~~EF~----DVGLMTGDVTIn-----P~ASCLVMTTEILRsMLYR 228 (1041)
T KOG0948|consen 183 ALSNQKYRELLEEFK----DVGLMTGDVTIN-----PDASCLVMTTEILRSMLYR 228 (1041)
T ss_pred hhcchhHHHHHHHhc----ccceeecceeeC-----CCCceeeeHHHHHHHHHhc
Confidence 888998888866543 355566654332 2567899999999988764
No 145
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.62 E-value=6.8e-07 Score=99.47 Aligned_cols=169 Identities=16% Similarity=0.131 Sum_probs=110.0
Q ss_pred ChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hhhH
Q 004925 30 LLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAAV 108 (723)
Q Consensus 30 L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~l~ 108 (723)
+-.+|++.+.-. . .. ..+++..++-+|||+..--.+...++.... +.++.|+| ++|+
T Consensus 512 Pd~WQ~elLDsv-D---r~-eSavIVAPTSaGKTfisfY~iEKVLResD~-----------------~VVIyvaPtKaLV 569 (1330)
T KOG0949|consen 512 PDEWQRELLDSV-D---RN-ESAVIVAPTSAGKTFISFYAIEKVLRESDS-----------------DVVIYVAPTKALV 569 (1330)
T ss_pred CcHHHHHHhhhh-h---cc-cceEEEeeccCCceeccHHHHHHHHhhcCC-----------------CEEEEecchHHHh
Confidence 334787755432 2 22 667888999999999987777666655543 78999999 7899
Q ss_pred HHHHHHHHhhcCCCCc-EEEEEeCCCCCCCccccCCCCEEEechhhhHHhhhhccCCCcccccccCccchhhhhhhhhhh
Q 004925 109 TQWVSEINRFTSVGST-KVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHLKY 187 (723)
Q Consensus 109 ~qW~~ei~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (723)
.|=..++..-+....+ ......|+....-....-.+.|.||-.+.+...+..- .+.+.
T Consensus 570 nQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlsp---------------------p~~q~ 628 (1330)
T KOG0949|consen 570 NQVSANVYARFDTKTFLRGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSP---------------------PHHQK 628 (1330)
T ss_pred hhhhHHHHHhhccCccccchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCc---------------------hhhhh
Confidence 9999988665531122 2222333322221112345789999999887765420 00011
Q ss_pred ccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccccccCCC-cHHHHHH
Q 004925 188 FCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRR-SNTAKAV 266 (723)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~kn~~-s~~~~~l 266 (723)
+ .. +..+||+||+|.+.+.. +..+..+
T Consensus 629 ~--------------------------------------------------ce--rIRyiIfDEVH~iG~~ed~l~~Eql 656 (1330)
T KOG0949|consen 629 F--------------------------------------------------CE--RIRYIIFDEVHLIGNEEDGLLWEQL 656 (1330)
T ss_pred h--------------------------------------------------hh--cceEEEechhhhccccccchHHHHH
Confidence 1 11 45789999999997765 6777777
Q ss_pred HhhhcCceEEEeCcCCCCchhhHHHHHHH
Q 004925 267 LALESSYKWALSGTPLQNRVGELYSLVRF 295 (723)
Q Consensus 267 ~~l~~~~~l~LTaTP~~n~~~dl~~~l~l 295 (723)
.-+-..-.++|||| .+++..++.+++-
T Consensus 657 l~li~CP~L~LSAT--igN~~l~qkWlnq 683 (1330)
T KOG0949|consen 657 LLLIPCPFLVLSAT--IGNPNLFQKWLNQ 683 (1330)
T ss_pred HHhcCCCeeEEecc--cCCHHHHHHHHHH
Confidence 77777777899998 4567777777773
No 146
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.58 E-value=1.8e-07 Score=82.45 Aligned_cols=81 Identities=15% Similarity=0.110 Sum_probs=42.4
Q ss_pred CcccCCCCCcHHHHHHHHHh-cCccccCCCCccCCCCCCCCCCCCCCceEEEechhhHHHHHHHHHhhcCCCCcEEEEEe
Q 004925 52 GILADEMGMGKTIQAIALVL-AKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYH 130 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~~qW~~ei~~~~~~~~~~~~~~~ 130 (723)
.+|-..+|+|||.-.|--+. ..... .+++||+.|..++. +|+.+.+. ...+..-.
T Consensus 7 ~~~d~hpGaGKTr~vlp~~~~~~i~~-------------------~~rvLvL~PTRvva---~em~~aL~--~~~~~~~t 62 (148)
T PF07652_consen 7 TVLDLHPGAGKTRRVLPEIVREAIKR-------------------RLRVLVLAPTRVVA---EEMYEALK--GLPVRFHT 62 (148)
T ss_dssp EEEE--TTSSTTTTHHHHHHHHHHHT-------------------T--EEEEESSHHHH---HHHHHHTT--TSSEEEES
T ss_pred eEEecCCCCCCcccccHHHHHHHHHc-------------------cCeEEEecccHHHH---HHHHHHHh--cCCcccCc
Confidence 36778899999997664332 22221 16999999965542 34444443 22222221
Q ss_pred CCCCCCCccccCCCCEEEechhhhHHhhh
Q 004925 131 GSNRERSAKQFSEFDFVITTYSIIEADYR 159 (723)
Q Consensus 131 g~~~~~~~~~~~~~~ivi~t~~~l~~~~~ 159 (723)
.... .......-|-+++|.++...+.
T Consensus 63 ~~~~---~~~~g~~~i~vMc~at~~~~~~ 88 (148)
T PF07652_consen 63 NARM---RTHFGSSIIDVMCHATYGHFLL 88 (148)
T ss_dssp TTSS-------SSSSEEEEEHHHHHHHHH
T ss_pred eeee---ccccCCCcccccccHHHHHHhc
Confidence 1111 1233556788999999877654
No 147
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.58 E-value=3.5e-06 Score=85.87 Aligned_cols=220 Identities=16% Similarity=0.151 Sum_probs=130.8
Q ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHhccccccH---------HHHHHHHHHHHhhccCcccccccccccccCC
Q 004925 387 VSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTVMNNY---------AHIFDLLTRLRQAVDHPYLVVYSKTASLRGE 457 (723)
Q Consensus 387 ~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~ 457 (723)
+..++++|+..|+++|+.+.......+..+.+........ ..+...+..++.+|+||++...--....
T Consensus 5 ~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~--- 81 (297)
T PF11496_consen 5 EYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQ--- 81 (297)
T ss_dssp EEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S----
T ss_pred eEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccc---
Confidence 6788999999999999999999999988888654443322 4456777889999999998643211110
Q ss_pred CccccccccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcccccccccCCCCCCccccccCCccc
Q 004925 458 TEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSS 537 (723)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (723)
T Consensus 82 -------------------------------------------------------------------------------- 81 (297)
T PF11496_consen 82 -------------------------------------------------------------------------------- 81 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhccccccCcchHHHHHHHHHHHHHh---hcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHH
Q 004925 538 SILNRIQLDEFQSSTKIEALREEIRFMVE---RDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAIN 614 (723)
Q Consensus 538 ~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~---~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~ 614 (723)
........+....|+|+..|-++|...+. ...+.++||.++...+++.|+.+|.-.++.+..+.|..-..+....-.
T Consensus 82 ll~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~ 161 (297)
T PF11496_consen 82 LLLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPK 161 (297)
T ss_dssp S-STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S--
T ss_pred cccchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCc
Confidence 01111112223569999999999998854 455689999999999999999999999999999999775544332220
Q ss_pred ------------hhc--CCCCceEEEEecCCCccc----ccccccCEEEEECCCCChhhHH-HHHHhhhhcCCcccEEEE
Q 004925 615 ------------RFT--EDPDCKIFLMSLKAGGVA----LNLTVASHVFLMDPWWNPAVEQ-QAQDRIHRIGQYKPIRIV 675 (723)
Q Consensus 615 ------------~F~--~~~~~~vll~s~~~~~eG----lnL~~a~~vI~~d~~wn~~~~~-Q~iGRi~R~Gq~~~V~v~ 675 (723)
... ......+.+++++-.... ++-...+.||-||+.+++.... |.+-...|.+ +.+-|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~--~~~Pii 239 (297)
T PF11496_consen 162 NGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN--RLCPII 239 (297)
T ss_dssp --------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH---------S--EE
T ss_pred ccccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC--CCCcEE
Confidence 000 123466777776655442 2233668899999999886543 4444444443 779999
Q ss_pred EEEeCCCHHHHHHHHH
Q 004925 676 RFLIENTIEERILKLQ 691 (723)
Q Consensus 676 ~l~~~~t~ee~~~~~~ 691 (723)
+|+..+|+|-.++..-
T Consensus 240 rLv~~nSiEHi~L~~~ 255 (297)
T PF11496_consen 240 RLVPSNSIEHIELCFP 255 (297)
T ss_dssp EEEETTSHHHHHHHHT
T ss_pred EEeeCCCHHHHHHHcc
Confidence 9999999997776543
No 148
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.54 E-value=3.1e-06 Score=95.78 Aligned_cols=84 Identities=11% Similarity=0.059 Sum_probs=62.7
Q ss_pred chHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHH-HHHHhhcCCCCceEEEEec
Q 004925 551 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARD-AAINRFTEDPDCKIFLMSL 629 (723)
Q Consensus 551 s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~-~~i~~F~~~~~~~vll~s~ 629 (723)
..|..++++.+... ...+..|||-|.+....+.|.+.|.+.|++...++......+++ .+|.+= + ...-+.++|
T Consensus 407 ~~K~~AI~~ei~~~--~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~A--G-~~G~VTIAT 481 (870)
T CHL00122 407 LSKWRAIADECLQM--HQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQA--G-RKGSITIAT 481 (870)
T ss_pred HHHHHHHHHHHHHH--HhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhc--C-CCCcEEEec
Confidence 46888999988876 45778999999999999999999999999999988863222333 444432 2 233355677
Q ss_pred CCCccccccc
Q 004925 630 KAGGVALNLT 639 (723)
Q Consensus 630 ~~~~eGlnL~ 639 (723)
..+|.|.|..
T Consensus 482 NMAGRGTDI~ 491 (870)
T CHL00122 482 NMAGRGTDII 491 (870)
T ss_pred cccCCCcCee
Confidence 9999997743
No 149
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.51 E-value=4.5e-07 Score=90.19 Aligned_cols=96 Identities=17% Similarity=0.211 Sum_probs=81.4
Q ss_pred HHHHhhcCCCCceEEEEecCCCccccccccc--------CEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCC
Q 004925 611 AAINRFTEDPDCKIFLMSLKAGGVALNLTVA--------SHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENT 682 (723)
Q Consensus 611 ~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a--------~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t 682 (723)
...++|+++ ...|+|+| .++++||+||.- ...|.+++||+.....|..||++|.||..+..+..+++.-.
T Consensus 52 ~e~~~F~~g-~k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 52 AEKQAFMDG-EKDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHHHhCC-CceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 577899987 67788887 999999999932 23488999999999999999999999998766666777777
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCccc
Q 004925 683 IEERILKLQEKKKLVFEGTVGGSADA 708 (723)
Q Consensus 683 ~ee~~~~~~~~K~~~~~~~~~~~~~~ 708 (723)
.|.+....+++|.....++..|+...
T Consensus 130 gE~Rfas~va~rL~sLgAlt~gdr~~ 155 (278)
T PF13871_consen 130 GERRFASTVARRLESLGALTRGDRRA 155 (278)
T ss_pred HHHHHHHHHHHHHhhccccccCcccc
Confidence 89999999999999999999776544
No 150
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.48 E-value=2.2e-05 Score=85.19 Aligned_cols=115 Identities=17% Similarity=0.225 Sum_probs=83.4
Q ss_pred cCCceEEEEcccHhHHHHHHHHHHhC------CC--eEEEeecCCCHHHHHHHHHhhcC-CCCceEEEEecCCCcccccc
Q 004925 568 DGSAKGIVFSQFTSFLDLINYSLHKS------GV--NCVQLVGSMSIPARDAAINRFTE-DPDCKIFLMSLKAGGVALNL 638 (723)
Q Consensus 568 ~~~~KvIIF~~~~~~~~~l~~~L~~~------g~--~~~~i~g~~~~~~r~~~i~~F~~-~~~~~vll~s~~~~~eGlnL 638 (723)
.+..-++||-.-.+.++.+...|.+. +. -+.-++|.++.+++.++ |.. .++.+-+|++|+.+...|..
T Consensus 256 E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI 332 (674)
T KOG0922|consen 256 EPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTI 332 (674)
T ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEe
Confidence 45558999999998888888888765 11 24668999998876544 554 34777788899999999999
Q ss_pred cccCEEE--------EECCCC-------ChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHH
Q 004925 639 TVASHVF--------LMDPWW-------NPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEE 685 (723)
Q Consensus 639 ~~a~~vI--------~~d~~w-------n~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee 685 (723)
.+..+|| .|+|-- .|..-.||.-|++|-|.+.+...|+|+++...+.
T Consensus 333 ~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~ 394 (674)
T KOG0922|consen 333 DGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDK 394 (674)
T ss_pred cceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhh
Confidence 9988886 455521 1234446666666666677889999999877643
No 151
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.46 E-value=2.2e-05 Score=91.86 Aligned_cols=113 Identities=14% Similarity=0.071 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcc
Q 004925 555 EALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGV 634 (723)
Q Consensus 555 ~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~e 634 (723)
+.+.+.|..+. . .+.+++|+..+...++.+...|....++. ...|... .+.+++++|..+ +..| |+.+.++.|
T Consensus 634 ~~~~~~i~~~~-~-~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~-~~~v-LlG~~sFwE 706 (820)
T PRK07246 634 EEIAKRLEELK-Q-LQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRG-EQQI-LLGLGSFWE 706 (820)
T ss_pred HHHHHHHHHHH-h-cCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcC-CCeE-EEecchhhC
Confidence 45666665554 2 33477777777788888888887655544 4445322 356789999874 3344 456699999
Q ss_pred ccccc--ccCEEEEECCCCC-h-----------------------------hhHHHHHHhhhhcCCcccEEE
Q 004925 635 ALNLT--VASHVFLMDPWWN-P-----------------------------AVEQQAQDRIHRIGQYKPIRI 674 (723)
Q Consensus 635 GlnL~--~a~~vI~~d~~wn-~-----------------------------~~~~Q~iGRi~R~Gq~~~V~v 674 (723)
|+|++ .+..+|+.-.|+- | ..+.|++||+.|--..+.|.+
T Consensus 707 GVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ 778 (820)
T PRK07246 707 GVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVL 778 (820)
T ss_pred CCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 99996 3455566665532 3 123399999999776666533
No 152
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.46 E-value=4.9e-06 Score=78.98 Aligned_cols=45 Identities=18% Similarity=0.133 Sum_probs=41.9
Q ss_pred EEecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcc
Q 004925 626 LMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYK 670 (723)
Q Consensus 626 l~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~ 670 (723)
++++...+.|++.-+.|.+|+||.|-.+.++..+.||++|+|-+.
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkg 346 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 346 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcccccc
Confidence 457799999999999999999999999999999999999999764
No 153
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.45 E-value=1.6e-05 Score=91.00 Aligned_cols=119 Identities=14% Similarity=0.131 Sum_probs=93.0
Q ss_pred cchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEec
Q 004925 550 SSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 629 (723)
Q Consensus 550 ~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~ 629 (723)
...|..++++.+..+ ...+..|||-|.+....+.|.+.|...|++...++...- ++++.|-+-. + ....+.++|
T Consensus 610 ~~eK~~Aii~ei~~~--~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h--~~EAeIVA~A-G-~~GaVTIAT 683 (1112)
T PRK12901 610 KREKYNAVIEEITEL--SEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH--QKEAEIVAEA-G-QPGTVTIAT 683 (1112)
T ss_pred HHHHHHHHHHHHHHH--HHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch--hhHHHHHHhc-C-CCCcEEEec
Confidence 357999999999988 457789999999999999999999999999888777543 4444333322 2 222255677
Q ss_pred CCCccccccc--------ccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEE
Q 004925 630 KAGGVALNLT--------VASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRI 674 (723)
Q Consensus 630 ~~~~eGlnL~--------~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v 674 (723)
..+|.|.|+. +.=|||.-+.+-|.....|..||++|+|.......
T Consensus 684 NMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f 736 (1112)
T PRK12901 684 NMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQF 736 (1112)
T ss_pred cCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceE
Confidence 9999999865 45678888999999999999999999998765444
No 154
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.45 E-value=7.5e-06 Score=92.62 Aligned_cols=84 Identities=12% Similarity=0.097 Sum_probs=62.9
Q ss_pred chHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCC-CHHHHHHHHHhhcCCCCceEEEEec
Q 004925 551 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSM-SIPARDAAINRFTEDPDCKIFLMSL 629 (723)
Q Consensus 551 s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~-~~~~r~~~i~~F~~~~~~~vll~s~ 629 (723)
..|..++++.+.+. ...+..|||-|......+.|.+.|.+.|++...++... ..++-..+|.+= + ...-+.++|
T Consensus 422 ~~K~~Ai~~ei~~~--~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~A--G-~~GaVTIAT 496 (939)
T PRK12902 422 IAKWRAVANETAEM--HKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQA--G-RKGAVTIAT 496 (939)
T ss_pred HHHHHHHHHHHHHH--HhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhc--C-CCCcEEEec
Confidence 57999999998887 45778999999999999999999999999999988862 223333444432 2 222345567
Q ss_pred CCCccccccc
Q 004925 630 KAGGVALNLT 639 (723)
Q Consensus 630 ~~~~eGlnL~ 639 (723)
..+|.|.|..
T Consensus 497 NMAGRGTDIk 506 (939)
T PRK12902 497 NMAGRGTDII 506 (939)
T ss_pred cCCCCCcCEe
Confidence 8999997754
No 155
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.41 E-value=2.1e-06 Score=98.75 Aligned_cols=69 Identities=16% Similarity=0.105 Sum_probs=52.6
Q ss_pred ceEEEEecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhc-----CCc---ccEEEEEEEeCCCHHHHHHHHH
Q 004925 622 CKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRI-----GQY---KPIRIVRFLIENTIEERILKLQ 691 (723)
Q Consensus 622 ~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~-----Gq~---~~V~v~~l~~~~t~ee~~~~~~ 691 (723)
+.-+|.|-.++.||+|-+.+-.+.-+...-+.....|-+||+.|+ |.. ..+ ...+++..|-++..-..+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~-~LTvianesy~dFa~~LQ 577 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEF-RLNYLIDYDEKDFASKLV 577 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccE-EEEEEeCccHHHHHHHHH
Confidence 444788889999999999988888888888999999999999995 332 236 566667777666554433
No 156
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.34 E-value=1.4e-06 Score=88.44 Aligned_cols=96 Identities=18% Similarity=0.221 Sum_probs=85.9
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhC---CCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEE
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKS---GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVF 645 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~---g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI 645 (723)
.-.|.||||......+-|.+++.+. .+.++.++|...+.+|.+.+++|... +++.+||+ ++++.|||++...++|
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~-dvkflict-dvaargldi~g~p~~i 581 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKF-DVKFLICT-DVAARGLDITGLPFMI 581 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhc-CeEEEEEe-hhhhccccccCCceEE
Confidence 4469999999999999999999887 35788899999999999999999976 77766665 9999999999999999
Q ss_pred EECCCCChhhHHHHHHhhhhc
Q 004925 646 LMDPWWNPAVEQQAQDRIHRI 666 (723)
Q Consensus 646 ~~d~~wn~~~~~Q~iGRi~R~ 666 (723)
+..+|-....+.+||||++|-
T Consensus 582 nvtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred EEecCcccchhhhhhhccchh
Confidence 999999999999999988874
No 157
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.30 E-value=4.5e-05 Score=87.59 Aligned_cols=120 Identities=19% Similarity=0.226 Sum_probs=85.8
Q ss_pred HHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHh----CCCeEEEeecCCCHHHHHHHHHhhcCCC-CceEEEEecCCC
Q 004925 558 REEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK----SGVNCVQLVGSMSIPARDAAINRFTEDP-DCKIFLMSLKAG 632 (723)
Q Consensus 558 ~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~----~g~~~~~i~g~~~~~~r~~~i~~F~~~~-~~~vll~s~~~~ 632 (723)
...+..+.. .+..-++||-.-...++...++|.+ ....++-++|.++.+++.+ -|+..+ +.+-+|++|+++
T Consensus 248 ~~~v~~~~~-~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNIA 323 (845)
T COG1643 248 VAAVDIHLR-EGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNIA 323 (845)
T ss_pred HHHHHHhcc-CCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEcccc
Confidence 334444443 3345899999999999999999988 3578899999999888777 455432 335467788999
Q ss_pred cccccccccCEEE--------EECCCC----------ChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHH
Q 004925 633 GVALNLTVASHVF--------LMDPWW----------NPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIE 684 (723)
Q Consensus 633 ~eGlnL~~a~~vI--------~~d~~w----------n~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~e 684 (723)
..+|.+....+|| .|++-- +.....||.||++|.+ +=.-|+|++++..+
T Consensus 324 ETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~---pGicyRLyse~~~~ 390 (845)
T COG1643 324 ETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG---PGICYRLYSEEDFL 390 (845)
T ss_pred ccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCC---CceEEEecCHHHHH
Confidence 9999999999987 333322 2244557777777744 56778899875554
No 158
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.25 E-value=0.00037 Score=78.43 Aligned_cols=109 Identities=14% Similarity=0.210 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcc
Q 004925 555 EALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGV 634 (723)
Q Consensus 555 ~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~e 634 (723)
...-.++..+ ..|+++.||+......+.+++.....+.++..++|..+..+ ++.| ++++|++-+ .+.+.
T Consensus 270 tF~~~L~~~L---~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W---~~~~VviYT-~~itv 338 (824)
T PF02399_consen 270 TFFSELLARL---NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESW---KKYDVVIYT-PVITV 338 (824)
T ss_pred hHHHHHHHHH---hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----cccc---cceeEEEEe-ceEEE
Confidence 3444444444 36679999999999999999999999999999988776552 2334 467877766 78889
Q ss_pred cccccc--cCEEEEE-CCC-CChh--hHHHHHHhhhhcCCcccEEEE
Q 004925 635 ALNLTV--ASHVFLM-DPW-WNPA--VEQQAQDRIHRIGQYKPIRIV 675 (723)
Q Consensus 635 GlnL~~--a~~vI~~-d~~-wn~~--~~~Q~iGRi~R~Gq~~~V~v~ 675 (723)
|+++-. -+.|+.| .|. ..|. ...|.+||+..+... ++.||
T Consensus 339 G~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~~-ei~v~ 384 (824)
T PF02399_consen 339 GLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLDN-EIYVY 384 (824)
T ss_pred EeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhccC-eEEEE
Confidence 999863 2334433 332 3343 468999999998854 45554
No 159
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.23 E-value=0.0003 Score=80.76 Aligned_cols=128 Identities=15% Similarity=0.150 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhC-------CCeEEEeecCCCHHHHHHHHHhhcCCCCceE
Q 004925 552 TKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS-------GVNCVQLVGSMSIPARDAAINRFTEDPDCKI 624 (723)
Q Consensus 552 ~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~-------g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~v 624 (723)
-....+.+++..+.+.....-+|||-.-...+..+.+.|..+ .+-+...++.++..+++.+.+.- .++.+-
T Consensus 395 id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~p--p~g~RK 472 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRP--PKGTRK 472 (924)
T ss_pred ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCC--CCCcch
Confidence 356677777777765555678999999999999999999753 25678889999988877776554 346677
Q ss_pred EEEecCCCcccccccccCEEE--------EECCCCCh----------hhHHHHHHhhhhcCCcccEEEEEEEeCCCHH
Q 004925 625 FLMSLKAGGVALNLTVASHVF--------LMDPWWNP----------AVEQQAQDRIHRIGQYKPIRIVRFLIENTIE 684 (723)
Q Consensus 625 ll~s~~~~~eGlnL~~a~~vI--------~~d~~wn~----------~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~e 684 (723)
+|++|..+..+|....+-+|| .|||.-+. ....||.||++| ..+-..|+|++..-.+
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRSRYE 547 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechhhhh
Confidence 888999999999999888776 56665433 455688888887 4455677888765433
No 160
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.07 E-value=1.6e-05 Score=83.96 Aligned_cols=100 Identities=22% Similarity=0.351 Sum_probs=79.6
Q ss_pred cCCceEEEEcccHhHHHHHHHHHHhCCCe-EEEeecCCCHHHHHHHHHhhcC-CCCceEEEEecCCCcccccccccCEEE
Q 004925 568 DGSAKGIVFSQFTSFLDLINYSLHKSGVN-CVQLVGSMSIPARDAAINRFTE-DPDCKIFLMSLKAGGVALNLTVASHVF 645 (723)
Q Consensus 568 ~~~~KvIIF~~~~~~~~~l~~~L~~~g~~-~~~i~g~~~~~~r~~~i~~F~~-~~~~~vll~s~~~~~eGlnL~~a~~vI 645 (723)
.+|.-||-|+. ..+=.+...++++|.. +++|+|+.+++.|.+--..||+ ++++.||++| ++.|.|+||. .++||
T Consensus 356 k~GDCvV~FSk--k~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAs-DAIGMGLNL~-IrRii 431 (700)
T KOG0953|consen 356 KPGDCVVAFSK--KDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVAS-DAIGMGLNLN-IRRII 431 (700)
T ss_pred CCCCeEEEeeh--hhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEee-cccccccccc-eeEEE
Confidence 46666666665 3455667777777666 9999999999999999999998 4577877765 9999999997 68999
Q ss_pred EECCC---------CChhhHHHHHHhhhhcCCccc
Q 004925 646 LMDPW---------WNPAVEQQAQDRIHRIGQYKP 671 (723)
Q Consensus 646 ~~d~~---------wn~~~~~Q~iGRi~R~Gq~~~ 671 (723)
|++.. -+.+..-|..||++|+|.+-+
T Consensus 432 F~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~ 466 (700)
T KOG0953|consen 432 FYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYP 466 (700)
T ss_pred EeecccCCcccceeccHHHHHHHhhcccccccCCc
Confidence 98876 244677799999999998744
No 161
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.91 E-value=0.00026 Score=76.54 Aligned_cols=93 Identities=13% Similarity=0.243 Sum_probs=61.2
Q ss_pred CCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEE--------ECCCCC-------hhhHHH
Q 004925 594 GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL--------MDPWWN-------PAVEQQ 658 (723)
Q Consensus 594 g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~--------~d~~wn-------~~~~~Q 658 (723)
++.+.-|++.++.+-+.++++.- .++.+.+|++|..+...|.++...+||= |.|.-. |..-.|
T Consensus 597 ~L~vlpiYSQLp~dlQ~kiFq~a--~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~An 674 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAKIFQKA--EGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQAN 674 (1042)
T ss_pred ceEEEeehhhCchhhhhhhcccC--CCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhcc
Confidence 67788889998876655554433 4577778888999999999999888872 222211 222233
Q ss_pred HHHhhhhcCCcccEEEEEEEeCCCHHHHHH
Q 004925 659 AQDRIHRIGQYKPIRIVRFLIENTIEERIL 688 (723)
Q Consensus 659 ~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~ 688 (723)
+-.|++|-|.+.+-.-|+|+++++....|+
T Consensus 675 A~QRaGRAGRt~pG~cYRlYTe~ay~~eml 704 (1042)
T KOG0924|consen 675 ADQRAGRAGRTGPGTCYRLYTEDAYKNEML 704 (1042)
T ss_pred chhhccccCCCCCcceeeehhhhHHHhhcc
Confidence 333444444455778899999987655443
No 162
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.90 E-value=0.00028 Score=79.84 Aligned_cols=122 Identities=17% Similarity=0.143 Sum_probs=87.4
Q ss_pred cchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEec
Q 004925 550 SSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 629 (723)
Q Consensus 550 ~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~ 629 (723)
.-.|..++++.|.+. ...+..|||-+.+....+.+.+.|.+.|++-..++-.. ..++..+-++.- ....+-++|
T Consensus 411 ~~~K~~Aiv~~I~~~--~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~--h~~EA~Iia~AG--~~gaVTiAT 484 (822)
T COG0653 411 EEEKFKAIVEDIKER--HEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKN--HAREAEIIAQAG--QPGAVTIAT 484 (822)
T ss_pred hHHHHHHHHHHHHHH--HhcCCCEEEcCcceecchhHHHHHHhcCCCceeecccc--HHHHHHHHhhcC--CCCcccccc
Confidence 356889999999887 45778999999999999999999999999988887765 366666666642 222234567
Q ss_pred CCCccccccc-ccC----------EEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEE
Q 004925 630 KAGGVALNLT-VAS----------HVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFL 678 (723)
Q Consensus 630 ~~~~eGlnL~-~a~----------~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~ 678 (723)
..+|.|-|+. ..+ +||=-+-+-+-...-|-.||.+|+| ......+++.
T Consensus 485 NMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG-DpG~S~F~lS 543 (822)
T COG0653 485 NMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG-DPGSSRFYLS 543 (822)
T ss_pred ccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC-Ccchhhhhhh
Confidence 9999999987 343 3343444433334449999999999 4445554443
No 163
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.85 E-value=0.0031 Score=73.27 Aligned_cols=87 Identities=15% Similarity=0.190 Sum_probs=51.9
Q ss_pred ChHHHHHHHHHHHHhccCCCC-CC--cccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechh
Q 004925 30 LLRYQKEWLAWALKQEESAIR-GG--ILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVA 106 (723)
Q Consensus 30 L~p~Q~~~~~~~~~~~~~~~~-g~--iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~ 106 (723)
=+-+|=.++..+.....+... |+ +-...||+|||+.=.=++..+...... ++-++.+-=..
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g----------------~RfsiALGLRT 472 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQG----------------ARFAIALGLRS 472 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCC----------------ceEEEEccccc
Confidence 356898888776654332222 22 446789999999864444444332221 12333333467
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEeCC
Q 004925 107 AVTQWVSEINRFTSVGSTKVLIYHGS 132 (723)
Q Consensus 107 l~~qW~~ei~~~~~~~~~~~~~~~g~ 132 (723)
|.-|.-+++.+-++-+.....+.-|+
T Consensus 473 LTLQTGda~r~rL~L~~ddLAVlIGs 498 (1110)
T TIGR02562 473 LTLQTGHALKTRLNLSDDDLAVLIGG 498 (1110)
T ss_pred eeccchHHHHHhcCCCccceEEEECH
Confidence 88999999998877555555554443
No 164
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00068 Score=74.81 Aligned_cols=63 Identities=21% Similarity=0.286 Sum_probs=46.3
Q ss_pred hhcC-CCCceEEEEecCCCcccccccccCEEE--------EECC---------CC-ChhhHHHHHHhhhhcCCcccEEEE
Q 004925 615 RFTE-DPDCKIFLMSLKAGGVALNLTVASHVF--------LMDP---------WW-NPAVEQQAQDRIHRIGQYKPIRIV 675 (723)
Q Consensus 615 ~F~~-~~~~~vll~s~~~~~eGlnL~~a~~vI--------~~d~---------~w-n~~~~~Q~iGRi~R~Gq~~~V~v~ 675 (723)
-|.. ..+.+.+|++|.++...|.++...+|| +||. .| +...-.||.||++|.|.- |-|
T Consensus 622 VF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpG---HcY 698 (1172)
T KOG0926|consen 622 VFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPG---HCY 698 (1172)
T ss_pred hccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCC---cee
Confidence 3444 346888899999999999999999988 3332 33 235566999999998854 667
Q ss_pred EEEeC
Q 004925 676 RFLIE 680 (723)
Q Consensus 676 ~l~~~ 680 (723)
+||..
T Consensus 699 RLYSS 703 (1172)
T KOG0926|consen 699 RLYSS 703 (1172)
T ss_pred ehhhh
Confidence 77743
No 165
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.63 E-value=0.00028 Score=70.39 Aligned_cols=73 Identities=23% Similarity=0.252 Sum_probs=45.7
Q ss_pred CChHHHHHHHHHHHHhccCCCCC-CcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechh-
Q 004925 29 PLLRYQKEWLAWALKQEESAIRG-GILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVA- 106 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~~~~~g-~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~- 106 (723)
+|-+.|..++..++.. .+ +++..++|+|||.+..+++........ .......+++||++|.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~-----~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~-----------~~~~~~~~~il~~~~sN~ 64 (236)
T PF13086_consen 1 KLNESQREAIQSALSS-----NGITLIQGPPGTGKTTTLASIIAQLLQRFK-----------SRSADRGKKILVVSPSNA 64 (236)
T ss_dssp ---HHHHHHHHHHCTS-----SE-EEEE-STTSSHHHHHHHHHHHH------------------HCCCSS-EEEEESSHH
T ss_pred CCCHHHHHHHHHHHcC-----CCCEEEECCCCCChHHHHHHHHHHhccchh-----------hhhhhccccceeecCCch
Confidence 4778999999888775 55 788999999999887777776521000 00001237999999954
Q ss_pred hHHHHHHHHHh
Q 004925 107 AVTQWVSEINR 117 (723)
Q Consensus 107 l~~qW~~ei~~ 117 (723)
-+.+-...+.+
T Consensus 65 avd~~~~~l~~ 75 (236)
T PF13086_consen 65 AVDNILERLKK 75 (236)
T ss_dssp HHHHHHHHHHC
T ss_pred hHHHHHHHHHh
Confidence 56776666666
No 166
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.61 E-value=0.00027 Score=79.32 Aligned_cols=97 Identities=7% Similarity=0.101 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhC-CCeEEEeecCCCHHHHHHHHHhhcCC--CCceEEEEec
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS-GVNCVQLVGSMSIPARDAAINRFTED--PDCKIFLMSL 629 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~-g~~~~~i~g~~~~~~r~~~i~~F~~~--~~~~vll~s~ 629 (723)
-.+.+.+.+..++....|.-.|.|+.|.. +..++..|... .++ +.+.|.. ..+..++++|.+. .+.+-+|+.+
T Consensus 454 ~~~~~~~~~~~~~~~~~G~~lvLfTS~~~-~~~~~~~l~~~l~~~-~l~qg~~--~~~~~l~~~f~~~~~~~~~~vL~gt 529 (636)
T TIGR03117 454 WLENVSLSTAAILRKAQGGTLVLTTAFSH-ISAIGQLVELGIPAE-IVIQSEK--NRLASAEQQFLALYANGIQPVLIAA 529 (636)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEechHHH-HHHHHHHHHhhcCCC-EEEeCCC--ccHHHHHHHHHHhhcCCCCcEEEeC
Confidence 34456666666666666656666666554 45556666543 333 4444543 2567899999874 1223356677
Q ss_pred CCCcccccc--------c--ccCEEEEECCCCCh
Q 004925 630 KAGGVALNL--------T--VASHVFLMDPWWNP 653 (723)
Q Consensus 630 ~~~~eGlnL--------~--~a~~vI~~d~~wn~ 653 (723)
.++-||+|+ + .++.||+.-.|+-+
T Consensus 530 ~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~ 563 (636)
T TIGR03117 530 GGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGL 563 (636)
T ss_pred CccccccccCCccCCCCCCCcccEEEEEeCCCCc
Confidence 999999999 2 58889998888765
No 167
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.54 E-value=0.00021 Score=77.05 Aligned_cols=80 Identities=23% Similarity=0.275 Sum_probs=64.0
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhh-
Q 004925 29 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA- 107 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l- 107 (723)
+|...|..+|...+.+ .=.||..++|+|||.|..+++..+.+... +++||++|.++
T Consensus 410 kLN~SQ~~AV~~VL~r-----plsLIQGPPGTGKTvtsa~IVyhl~~~~~------------------~~VLvcApSNiA 466 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQR-----PLSLIQGPPGTGKTVTSATIVYHLARQHA------------------GPVLVCAPSNIA 466 (935)
T ss_pred hhchHHHHHHHHHHcC-----CceeeecCCCCCceehhHHHHHHHHHhcC------------------CceEEEcccchh
Confidence 6778999999999987 66789999999999998777766655543 79999999776
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 004925 108 VTQWVSEINRFTSVGSTKVLIYHGSNRE 135 (723)
Q Consensus 108 ~~qW~~ei~~~~~~~~~~~~~~~g~~~~ 135 (723)
++|-.+-|.+- .++++-+....++
T Consensus 467 VDqLaeKIh~t----gLKVvRl~aksRE 490 (935)
T KOG1802|consen 467 VDQLAEKIHKT----GLKVVRLCAKSRE 490 (935)
T ss_pred HHHHHHHHHhc----CceEeeeehhhhh
Confidence 79999989877 5777766554433
No 168
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.53 E-value=0.00016 Score=80.35 Aligned_cols=46 Identities=13% Similarity=-0.047 Sum_probs=40.7
Q ss_pred CceEEEEecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhc
Q 004925 621 DCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRI 666 (723)
Q Consensus 621 ~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~ 666 (723)
.+.-+|.|-.++-||+|=+.+=.+.=+-+.-+...-.|-+||..|+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRL 527 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRL 527 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceee
Confidence 3455888999999999999888888899999999999999999995
No 169
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.48 E-value=0.0046 Score=67.21 Aligned_cols=77 Identities=18% Similarity=0.291 Sum_probs=51.8
Q ss_pred EEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEECCCC------Ch--------------hhH
Q 004925 597 CVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWW------NP--------------AVE 656 (723)
Q Consensus 597 ~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~w------n~--------------~~~ 656 (723)
++-|+.+.+.+.+.++++-- .++++-+|+.|..+...|.+.+..+|| ||.+ || ...
T Consensus 509 v~PiYaNLPselQakIFePt--P~gaRKVVLATNIAETSlTIdgI~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA 584 (902)
T KOG0923|consen 509 VLPIYANLPSELQAKIFEPT--PPGARKVVLATNIAETSLTIDGIKYVI--DPGFVKQNSYNPRTGMESLLVTPISKASA 584 (902)
T ss_pred EeeccccCChHHHHhhcCCC--CCCceeEEEeecchhhceeecCeEEEe--cCccccccCcCCCcCceeEEEeeechhhh
Confidence 56678888877665553332 345666666779999999988877776 3322 22 556
Q ss_pred HHHHHhhhhcCCcccEEEEEEEeC
Q 004925 657 QQAQDRIHRIGQYKPIRIVRFLIE 680 (723)
Q Consensus 657 ~Q~iGRi~R~Gq~~~V~v~~l~~~ 680 (723)
.||.||++|.|--+ -|+|++.
T Consensus 585 ~QRaGRAGRtgPGK---CfRLYt~ 605 (902)
T KOG0923|consen 585 NQRAGRAGRTGPGK---CFRLYTA 605 (902)
T ss_pred hhhccccCCCCCCc---eEEeech
Confidence 69999999988654 4556653
No 170
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.15 E-value=0.0022 Score=76.82 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCC--eEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 004925 554 IEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGV--NCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 631 (723)
Q Consensus 554 l~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~--~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~ 631 (723)
...+.+.|..+....++ +++||......+..+...|..... .+..+.-+++...|.+++++|.... -. +|+.+.+
T Consensus 737 ~~~la~~i~~l~~~~~g-~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~-~~-iLlG~~s 813 (928)
T PRK08074 737 IEEVAAYIAKIAKATKG-RMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFD-KA-ILLGTSS 813 (928)
T ss_pred HHHHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcC-Ce-EEEecCc
Confidence 35666667666544444 677777777888888888875422 1233333443356889999998743 23 4456799
Q ss_pred Ccccccccc--cCEEEEECCCC-Chh-----------------------------hHHHHHHhhhhcCCcccEE
Q 004925 632 GGVALNLTV--ASHVFLMDPWW-NPA-----------------------------VEQQAQDRIHRIGQYKPIR 673 (723)
Q Consensus 632 ~~eGlnL~~--a~~vI~~d~~w-n~~-----------------------------~~~Q~iGRi~R~Gq~~~V~ 673 (723)
+.||+|+++ ++.||+.-.|+ +|. .+.|++||+-|-.+.+.+.
T Consensus 814 FwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v 887 (928)
T PRK08074 814 FWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTV 887 (928)
T ss_pred ccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEE
Confidence 999999994 57888888776 332 1248999999988777653
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.14 E-value=0.0021 Score=64.35 Aligned_cols=104 Identities=20% Similarity=0.130 Sum_probs=62.5
Q ss_pred ccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechh
Q 004925 27 ITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVA 106 (723)
Q Consensus 27 ~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~ 106 (723)
...+++-|+.++..| . .|-|.-+.+|=|||+++. +.++.....+ +++=||+.+.
T Consensus 75 g~~p~~vQll~~l~L--~-----~G~laEm~TGEGKTli~~-l~a~~~AL~G------------------~~V~vvT~Nd 128 (266)
T PF07517_consen 75 GLRPYDVQLLGALAL--H-----KGRLAEMKTGEGKTLIAA-LPAALNALQG------------------KGVHVVTSND 128 (266)
T ss_dssp S----HHHHHHHHHH--H-----TTSEEEESTTSHHHHHHH-HHHHHHHTTS------------------S-EEEEESSH
T ss_pred CCcccHHHHhhhhhc--c-----cceeEEecCCCCcHHHHH-HHHHHHHHhc------------------CCcEEEeccH
Confidence 346666777777655 2 677999999999999984 3333333222 4667777754
Q ss_pred -hH---HHHHHHHHhhcCCCCcEEEEEeCCCCCCCccccCCCCEEEechhhhHHhhh
Q 004925 107 -AV---TQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYR 159 (723)
Q Consensus 107 -l~---~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ivi~t~~~l~~~~~ 159 (723)
|. .+|...+-++++ +.+...............=..+|+-.|-+.+.-++.
T Consensus 129 yLA~RD~~~~~~~y~~LG---lsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~L 182 (266)
T PF07517_consen 129 YLAKRDAEEMRPFYEFLG---LSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYL 182 (266)
T ss_dssp HHHHHHHHHHHHHHHHTT-----EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHhh---hccccCccccCHHHHHHHHhCcccccccchhhHHHH
Confidence 54 678888888874 666666665433222223346788888888876544
No 172
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.10 E-value=0.00067 Score=65.09 Aligned_cols=43 Identities=30% Similarity=0.173 Sum_probs=31.3
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccc
Q 004925 29 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
++-+.|...+..+... .-.++.-..|+|||+.|++.+......
T Consensus 4 p~~~~Q~~~~~al~~~-----~~v~~~G~AGTGKT~LA~a~Al~~v~~ 46 (205)
T PF02562_consen 4 PKNEEQKFALDALLNN-----DLVIVNGPAGTGKTFLALAAALELVKE 46 (205)
T ss_dssp --SHHHHHHHHHHHH------SEEEEE--TTSSTTHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhC-----CeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 3456999999998844 567888899999999999888766554
No 173
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.06 E-value=0.52 Score=50.79 Aligned_cols=128 Identities=13% Similarity=0.089 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHHHHh-hcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 004925 552 TKIEALREEIRFMVE-RDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 630 (723)
Q Consensus 552 ~Kl~~l~~~l~~~~~-~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~ 630 (723)
.+++.+.+.|---+. .....++|||...--..-.|.++|++.++..+.++-.++..+...+...|.++ ...+||.|-+
T Consensus 281 ~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G-~~~iLL~TER 359 (442)
T PF06862_consen 281 ARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHG-RKPILLYTER 359 (442)
T ss_pred HHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcC-CceEEEEEhH
Confidence 455555553333222 44557899999998888899999999999999999999999999999999987 7788888854
Q ss_pred CCc-ccccccccCEEEEECCCCChhhHHHHHHhhhhcCC----cccEEEEEEEeC
Q 004925 631 AGG-VALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQ----YKPIRIVRFLIE 680 (723)
Q Consensus 631 ~~~-eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq----~~~V~v~~l~~~ 680 (723)
..= .=..+.++.+||||.||-+|.-+...+.-+..-.+ .....+..|+++
T Consensus 360 ~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 360 FHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred HhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 321 24456789999999999999888888866655433 233555556665
No 174
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.02 E-value=0.0027 Score=59.57 Aligned_cols=100 Identities=16% Similarity=0.186 Sum_probs=63.9
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhCC----CeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecC--CCccccccc--c
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKSG----VNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK--AGGVALNLT--V 640 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~g----~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~--~~~eGlnL~--~ 640 (723)
.+.+++||......++.+...++..+ +.+..- + ..++..++++|.++.+. +|+++. ..+||+|+. .
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q-~---~~~~~~~l~~~~~~~~~--il~~v~~g~~~EGiD~~~~~ 81 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ-G---SKSRDELLEEFKRGEGA--ILLAVAGGSFSEGIDFPGDL 81 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES-T---CCHHHHHHHHHCCSSSE--EEEEETTSCCGSSS--ECES
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec-C---cchHHHHHHHHHhccCe--EEEEEecccEEEeecCCCch
Confidence 34699999999999999999998763 333222 2 35788999999986443 455556 899999999 4
Q ss_pred cCEEEEECCCCChh------------------------------hHHHHHHhhhhcCCcccEEE
Q 004925 641 ASHVFLMDPWWNPA------------------------------VEQQAQDRIHRIGQYKPIRI 674 (723)
Q Consensus 641 a~~vI~~d~~wn~~------------------------------~~~Q~iGRi~R~Gq~~~V~v 674 (723)
+..||+...|+-+. ...|++||+.|-.+...+.+
T Consensus 82 ~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~ 145 (167)
T PF13307_consen 82 LRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVII 145 (167)
T ss_dssp EEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEE
T ss_pred hheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEE
Confidence 77889888886321 22399999999776655443
No 175
>PRK10536 hypothetical protein; Provisional
Probab=96.99 E-value=0.002 Score=63.66 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=31.7
Q ss_pred EEEEeeccccccCCCcHHHHHHHhhhcCceEEEeCcCCCCc
Q 004925 245 ERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNR 285 (723)
Q Consensus 245 ~~vIiDEaH~~kn~~s~~~~~l~~l~~~~~l~LTaTP~~n~ 285 (723)
++||+|||+++.. ......+.++....+++++|-|-+.+
T Consensus 178 ~~vIvDEaqn~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD 216 (262)
T PRK10536 178 AVVILDEAQNVTA--AQMKMFLTRLGENVTVIVNGDITQCD 216 (262)
T ss_pred CEEEEechhcCCH--HHHHHHHhhcCCCCEEEEeCChhhcc
Confidence 6899999999955 45566777888899999999986544
No 176
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.77 E-value=0.0039 Score=71.06 Aligned_cols=81 Identities=14% Similarity=0.135 Sum_probs=59.3
Q ss_pred cccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEech-hhHHHHHHHHHhhcCCCCcEEEEEeC
Q 004925 53 ILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AAVTQWVSEINRFTSVGSTKVLIYHG 131 (723)
Q Consensus 53 iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~-~l~~qW~~ei~~~~~~~~~~~~~~~g 131 (723)
|+..-.|+|||-+-+.++...+..+ +.+||++|. .+..|+.+.+...++ ...+.++|+
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~G-------------------k~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS 222 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAG-------------------RGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSA 222 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcC-------------------CeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECC
Confidence 4333359999999988888776643 578999995 789999999999986 456777887
Q ss_pred CCCCCCc-cc-----cCCCCEEEechhhh
Q 004925 132 SNRERSA-KQ-----FSEFDFVITTYSII 154 (723)
Q Consensus 132 ~~~~~~~-~~-----~~~~~ivi~t~~~l 154 (723)
....... .. .+...|||-|.+.+
T Consensus 223 ~l~~~~R~~~w~~~~~G~~~IViGtRSAv 251 (665)
T PRK14873 223 GLGPADRYRRWLAVLRGQARVVVGTRSAV 251 (665)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEcceeE
Confidence 5544321 11 24567999998876
No 177
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=96.67 E-value=0.0034 Score=67.83 Aligned_cols=74 Identities=20% Similarity=0.212 Sum_probs=55.8
Q ss_pred CCCCCCCccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCce
Q 004925 20 AEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKAT 99 (723)
Q Consensus 20 ~~~p~~~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (723)
...-..+...|-+-|+.++.+..... .=.++-.++|+|||.|...+|.++.... +.+
T Consensus 176 ~~~~~~~~~~ln~SQk~Av~~~~~~k----~l~~I~GPPGTGKT~TlvEiI~qlvk~~-------------------k~V 232 (649)
T KOG1803|consen 176 IKKITFFNKNLNSSQKAAVSFAINNK----DLLIIHGPPGTGKTRTLVEIISQLVKQK-------------------KRV 232 (649)
T ss_pred hcccccCCccccHHHHHHHHHHhccC----CceEeeCCCCCCceeeHHHHHHHHHHcC-------------------CeE
Confidence 34445566788999999999987653 2246778999999999988888776543 688
Q ss_pred EEEechhh-HHHHHHHHH
Q 004925 100 LVICPVAA-VTQWVSEIN 116 (723)
Q Consensus 100 LIv~P~~l-~~qW~~ei~ 116 (723)
||.+|.++ +++-.+-+.
T Consensus 233 LVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 233 LVCAPSNVAVDNIVERLT 250 (649)
T ss_pred EEEcCchHHHHHHHHHhc
Confidence 99999765 677776544
No 178
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.63 E-value=0.0098 Score=68.02 Aligned_cols=70 Identities=21% Similarity=0.197 Sum_probs=53.1
Q ss_pred CccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEech
Q 004925 26 LITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV 105 (723)
Q Consensus 26 ~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~ 105 (723)
+...|-+.|+.++..++... ...++-.++|+|||.+++.++......+ .++|+++|.
T Consensus 154 ~~~~ln~~Q~~Av~~~l~~~----~~~lI~GpPGTGKT~t~~~ii~~~~~~g-------------------~~VLv~a~s 210 (637)
T TIGR00376 154 FDPNLNESQKEAVSFALSSK----DLFLIHGPPGTGKTRTLVELIRQLVKRG-------------------LRVLVTAPS 210 (637)
T ss_pred cCCCCCHHHHHHHHHHhcCC----CeEEEEcCCCCCHHHHHHHHHHHHHHcC-------------------CCEEEEcCc
Confidence 34578999999998876531 4467888999999999988887655422 488999996
Q ss_pred hh-HHHHHHHHHhh
Q 004925 106 AA-VTQWVSEINRF 118 (723)
Q Consensus 106 ~l-~~qW~~ei~~~ 118 (723)
+. +.+..+.+...
T Consensus 211 n~Avd~l~e~l~~~ 224 (637)
T TIGR00376 211 NIAVDNLLERLALC 224 (637)
T ss_pred HHHHHHHHHHHHhC
Confidence 54 68887777664
No 179
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.62 E-value=0.014 Score=70.09 Aligned_cols=87 Identities=8% Similarity=0.122 Sum_probs=56.7
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hh
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VA 106 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~ 106 (723)
...||-|.+.+..+.+....+ +..++-.++|+|||+.-|.-+....... .++++|-++ ..
T Consensus 256 ~e~R~~Q~~m~~~v~~~l~~~-~~~~iEA~TGtGKTlaYLlpa~~~a~~~------------------~~~vvIsT~T~~ 316 (928)
T PRK08074 256 YEKREGQQEMMKEVYTALRDS-EHALIEAGTGTGKSLAYLLPAAYFAKKK------------------EEPVVISTYTIQ 316 (928)
T ss_pred CcCCHHHHHHHHHHHHHHhcC-CCEEEECCCCCchhHHHHHHHHHHhhcc------------------CCeEEEEcCCHH
Confidence 478999999999988888766 6667778999999986543222211111 157788888 45
Q ss_pred hHHHHHH-H---HHhhcCCCCcEEEEEeCCCC
Q 004925 107 AVTQWVS-E---INRFTSVGSTKVLIYHGSNR 134 (723)
Q Consensus 107 l~~qW~~-e---i~~~~~~~~~~~~~~~g~~~ 134 (723)
|-.|-.. + +.+.++. .+++.+.-|-.+
T Consensus 317 LQ~Ql~~kDiP~L~~~~~~-~~~~~~lKGr~n 347 (928)
T PRK08074 317 LQQQLLEKDIPLLQKIFPF-PVEAALLKGRSH 347 (928)
T ss_pred HHHHHHHhhHHHHHHHcCC-CceEEEEEcccc
Confidence 6566433 3 4555543 566776666443
No 180
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.61 E-value=0.043 Score=57.85 Aligned_cols=108 Identities=19% Similarity=0.244 Sum_probs=62.0
Q ss_pred CceEEEEcccHhHHHHHHHHHHhC---------CCeEEEeecCCCHHHHHHHHHhhcC---CCCceEEEEecCCCccccc
Q 004925 570 SAKGIVFSQFTSFLDLINYSLHKS---------GVNCVQLVGSMSIPARDAAINRFTE---DPDCKIFLMSLKAGGVALN 637 (723)
Q Consensus 570 ~~KvIIF~~~~~~~~~l~~~L~~~---------g~~~~~i~g~~~~~~r~~~i~~F~~---~~~~~vll~s~~~~~eGln 637 (723)
..-+++|-.-.+.++...+.+... .+++.-++ +.+++.+++.-.. +...+-+++|+..+...+.
T Consensus 253 ~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetslt 328 (699)
T KOG0925|consen 253 PGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLT 328 (699)
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeee
Confidence 346677766666555555554432 12233333 3333333333221 2234556778899988888
Q ss_pred ccccCEEEEECCCC------C-----------hhhHHHHHHhhhhcCCcccEEEEEEEeCCCH
Q 004925 638 LTVASHVFLMDPWW------N-----------PAVEQQAQDRIHRIGQYKPIRIVRFLIENTI 683 (723)
Q Consensus 638 L~~a~~vI~~d~~w------n-----------~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ 683 (723)
+.+.-+|| ||.+ | |..-.||..|.+|.|..++-.-++|+++..+
T Consensus 329 idgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~ 389 (699)
T KOG0925|consen 329 IDGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAF 389 (699)
T ss_pred eccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhh
Confidence 77655554 3332 3 3444577777777777888888899986443
No 181
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.49 E-value=0.021 Score=66.43 Aligned_cols=117 Identities=14% Similarity=0.156 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCe-EEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVN-CVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 631 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~-~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~ 631 (723)
=+..+...|..+....++ ++|||...-..++.+...+...... .....|.. .+...++.|.+.++. .+++.+.+
T Consensus 463 ~~~~~~~~i~~~~~~~~~-~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~-~~lv~~gs 537 (654)
T COG1199 463 LLAKLAAYLREILKASPG-GVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEG-LILVGGGS 537 (654)
T ss_pred HHHHHHHHHHHHHhhcCC-CEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCC-eEEEeecc
Confidence 445555666666655555 8899999889999999999887653 33444443 455899999886443 45667799
Q ss_pred Cccccccc--ccCEEEEECCCCC-h-----------------------------hhHHHHHHhhhhcCCcccEEE
Q 004925 632 GGVALNLT--VASHVFLMDPWWN-P-----------------------------AVEQQAQDRIHRIGQYKPIRI 674 (723)
Q Consensus 632 ~~eGlnL~--~a~~vI~~d~~wn-~-----------------------------~~~~Q~iGRi~R~Gq~~~V~v 674 (723)
++||+|++ .+..||+.-.|+- | ....|++||+.|--+.+.|.+
T Consensus 538 f~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 538 FWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred ccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEE
Confidence 99999999 4678888887775 2 334599999999655566544
No 182
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=96.45 E-value=0.0019 Score=44.68 Aligned_cols=40 Identities=43% Similarity=0.961 Sum_probs=30.3
Q ss_pred ccccccCCCCCcccccCCccchhhhhhhhcCcCC--CCCCCC
Q 004925 469 CGLCNDLADDPVVTNCGHAFCKACLFDSSASKFV--AKCPTC 508 (723)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 508 (723)
|++|.+...+|+.+.|||.||..|+......... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 6789999999999999999999999888777654 367654
No 183
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.44 E-value=0.0079 Score=64.01 Aligned_cols=50 Identities=18% Similarity=0.241 Sum_probs=33.2
Q ss_pred CcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechh-hHHHHHHHHHhh
Q 004925 52 GILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVA-AVTQWVSEINRF 118 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~-l~~qW~~ei~~~ 118 (723)
.++--..|+|||+.|+.++..+..... ....+++|++. +...-...+...
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~-----------------~~~~~~l~~n~~l~~~l~~~l~~~ 54 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEE-----------------GKKVLYLCGNHPLRNKLREQLAKK 54 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhcccc-----------------CCceEEEEecchHHHHHHHHHhhh
Confidence 356678999999999999987711111 15678888855 455555556444
No 184
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.38 E-value=0.021 Score=61.02 Aligned_cols=116 Identities=13% Similarity=0.058 Sum_probs=90.2
Q ss_pred CcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhC----CC----eEEEeecCCCHHHHHHHHHhhcCCC
Q 004925 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS----GV----NCVQLVGSMSIPARDAAINRFTEDP 620 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~----g~----~~~~i~g~~~~~~r~~~i~~F~~~~ 620 (723)
..+.|+.....++.+++. .+-+.|-||..+.+.+.+-...+.. |- .+..+.|+-..++|.++-.+.-.+
T Consensus 506 ~~~~~i~E~s~~~~~~i~--~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G- 582 (1034)
T KOG4150|consen 506 EKSSKVVEVSHLFAEMVQ--HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGG- 582 (1034)
T ss_pred hhhhHHHHHHHHHHHHHH--cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCC-
Confidence 346788888888888865 5689999999987766554444332 21 245678888889988887776654
Q ss_pred CceEEEEecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCC
Q 004925 621 DCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQ 668 (723)
Q Consensus 621 ~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq 668 (723)
... -|++|.++.-|||+...+.|+.+..|.+.+.+.|..||++|-+.
T Consensus 583 ~L~-giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk 629 (1034)
T KOG4150|consen 583 KLC-GIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNK 629 (1034)
T ss_pred eee-EEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCC
Confidence 333 35577999999999999999999999999999999999999654
No 185
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.36 E-value=0.004 Score=55.76 Aligned_cols=36 Identities=31% Similarity=0.373 Sum_probs=27.4
Q ss_pred EEEEeeccccccCCCcHHHHHHHhh--hcCceEEEeCcCC
Q 004925 245 ERIILDEAHFIKDRRSNTAKAVLAL--ESSYKWALSGTPL 282 (723)
Q Consensus 245 ~~vIiDEaH~~kn~~s~~~~~l~~l--~~~~~l~LTaTP~ 282 (723)
.+|||||+|++. +......++.+ .....++++|||-
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTPE 126 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESST
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEEChh
Confidence 689999999984 24556666666 5667789999993
No 186
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.29 E-value=0.013 Score=66.61 Aligned_cols=78 Identities=26% Similarity=0.210 Sum_probs=53.4
Q ss_pred cCCCCCCCCcc----CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCC
Q 004925 18 ETAEDPPDLIT----PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGL 93 (723)
Q Consensus 18 ~~~~~p~~~~~----~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~ 93 (723)
+....+|.+.. .|..-|+.++..++..+.-. .|++ -+|+|||.+...++..+...+
T Consensus 654 ~~~~~~p~~~~~~~~~LN~dQr~A~~k~L~aedy~---LI~G-MPGTGKTTtI~~LIkiL~~~g---------------- 713 (1100)
T KOG1805|consen 654 LSKVLIPKIKKIILLRLNNDQRQALLKALAAEDYA---LILG-MPGTGKTTTISLLIKILVALG---------------- 713 (1100)
T ss_pred cccccCchhhHHHHhhcCHHHHHHHHHHHhccchh---eeec-CCCCCchhhHHHHHHHHHHcC----------------
Confidence 33444444444 88899999999888765433 2444 599999999988888877654
Q ss_pred CCCCceEEEech-hhHHHHHHHHHhh
Q 004925 94 LGIKATLVICPV-AAVTQWVSEINRF 118 (723)
Q Consensus 94 ~~~~~~LIv~P~-~l~~qW~~ei~~~ 118 (723)
+.+|+.+=. +-+++----+..+
T Consensus 714 ---kkVLLtsyThsAVDNILiKL~~~ 736 (1100)
T KOG1805|consen 714 ---KKVLLTSYTHSAVDNILIKLKGF 736 (1100)
T ss_pred ---CeEEEEehhhHHHHHHHHHHhcc
Confidence 567777664 4466665555544
No 187
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.28 E-value=0.017 Score=64.98 Aligned_cols=77 Identities=17% Similarity=0.184 Sum_probs=61.6
Q ss_pred ccCCCCCCCCccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCC
Q 004925 17 TETAEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGI 96 (723)
Q Consensus 17 ~~~~~~p~~~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (723)
.+....|........|||++.+..+-... .+...+.-..-+|||.+++.++.+.....+
T Consensus 4 ~~~s~~pG~w~~~~~Py~~eimd~~~~~~---v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P------------------ 62 (557)
T PF05876_consen 4 PESSAEPGPWRTDRTPYLREIMDALSDPS---VREVVVMKSAQVGKTELLLNWIGYSIDQDP------------------ 62 (557)
T ss_pred CcCCCCCCCCCCCCChhHHHHHHhcCCcC---ccEEEEEEcchhhHhHHHHhhceEEEEeCC------------------
Confidence 34456677788899999999888764432 467788889999999999999988887766
Q ss_pred CceEEEec-hhhHHHHHHH
Q 004925 97 KATLVICP-VAAVTQWVSE 114 (723)
Q Consensus 97 ~~~LIv~P-~~l~~qW~~e 114 (723)
.++|+|.| ......|.++
T Consensus 63 ~~~l~v~Pt~~~a~~~~~~ 81 (557)
T PF05876_consen 63 GPMLYVQPTDDAAKDFSKE 81 (557)
T ss_pred CCEEEEEEcHHHHHHHHHH
Confidence 79999999 5677888755
No 188
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=96.24 E-value=0.0058 Score=56.99 Aligned_cols=56 Identities=32% Similarity=0.647 Sum_probs=44.5
Q ss_pred ccccccccccCCCCCcccccCCccchhhhhhhhc--------------CcCCCCCCCCCCCccccccccc
Q 004925 465 VQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSA--------------SKFVAKCPTCSIPLTVDFTANE 520 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 520 (723)
....|.+|.+...+|+++.|||.||..|+.+-.. ......||.|+..+........
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPi 86 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPI 86 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEe
Confidence 3577999999999999999999999999975432 2245789999999986544433
No 189
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.98 E-value=0.03 Score=63.30 Aligned_cols=98 Identities=17% Similarity=0.169 Sum_probs=62.0
Q ss_pred CCCCCCccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHH----HHHHhcCccccCCCC----c-----cCCC-
Q 004925 21 EDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQA----IALVLAKREIRGTIG----E-----LDAS- 86 (723)
Q Consensus 21 ~~p~~~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~a----l~~i~~~~~~~~~~~----~-----~~~~- 86 (723)
..|-.|...++|.|+..+..++....+. -+|+|-.++|+|||+.- +++...+........ . ..++
T Consensus 13 Gv~V~fP~qpY~~Q~a~M~rvl~~L~~~-q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~ 91 (945)
T KOG1132|consen 13 GVPVEFPFQPYPTQLAFMTRVLSCLDRK-QNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSD 91 (945)
T ss_pred CceeeccCCcchHHHHHHHHHHHHHHHh-hhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCcc
Confidence 4566677888999999999999888877 67999999999999974 444444432111110 0 0000
Q ss_pred ----CCCCCCCC----CCCceEEEechh--hHHHHHHHHHhhc
Q 004925 87 ----SSSSTGLL----GIKATLVICPVA--AVTQWVSEINRFT 119 (723)
Q Consensus 87 ----~~~~~~~~----~~~~~LIv~P~~--l~~qW~~ei~~~~ 119 (723)
.....+.+ -..|.++.+... -+.|-.+|+.+..
T Consensus 92 ~~g~~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 92 SGGEKSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred CCCCchhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 00011111 125777887743 4888889988753
No 190
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=95.97 E-value=0.023 Score=58.39 Aligned_cols=79 Identities=15% Similarity=0.158 Sum_probs=54.4
Q ss_pred CccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEech
Q 004925 26 LITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV 105 (723)
Q Consensus 26 ~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~ 105 (723)
|....+|.|++.+..+......+ +.+|+-.++|+|||+..|..+........... +..+++++++.
T Consensus 5 FPy~~r~~Q~~~m~~v~~~~~~~-~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-------------~~~kvi~~t~T 70 (289)
T smart00489 5 FPYEPYPIQYEFMEELKRVLDRG-KIGILESPTGTGKTLSLLCLTLTWLRSFPERI-------------QKIKLIYLSRT 70 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcC-CcEEEECCCCcchhHHHHHHHHHHHHhCcccc-------------cccceeEEecc
Confidence 55567999999999988888777 78899999999999998765543222111100 01366777774
Q ss_pred -hhHHHHHHHHHhh
Q 004925 106 -AAVTQWVSEINRF 118 (723)
Q Consensus 106 -~l~~qW~~ei~~~ 118 (723)
.+..|-..++.+.
T Consensus 71 ~~~~~q~i~~l~~~ 84 (289)
T smart00489 71 VSEIEKRLEELRKL 84 (289)
T ss_pred HHHHHHHHHHHHhc
Confidence 5567766777665
No 191
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=95.97 E-value=0.023 Score=58.39 Aligned_cols=79 Identities=15% Similarity=0.158 Sum_probs=54.4
Q ss_pred CccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEech
Q 004925 26 LITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV 105 (723)
Q Consensus 26 ~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~ 105 (723)
|....+|.|++.+..+......+ +.+|+-.++|+|||+..|..+........... +..+++++++.
T Consensus 5 FPy~~r~~Q~~~m~~v~~~~~~~-~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-------------~~~kvi~~t~T 70 (289)
T smart00488 5 FPYEPYPIQYEFMEELKRVLDRG-KIGILESPTGTGKTLSLLCLTLTWLRSFPERI-------------QKIKLIYLSRT 70 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcC-CcEEEECCCCcchhHHHHHHHHHHHHhCcccc-------------cccceeEEecc
Confidence 55567999999999988888777 78899999999999998765543222111100 01366777774
Q ss_pred -hhHHHHHHHHHhh
Q 004925 106 -AAVTQWVSEINRF 118 (723)
Q Consensus 106 -~l~~qW~~ei~~~ 118 (723)
.+..|-..++.+.
T Consensus 71 ~~~~~q~i~~l~~~ 84 (289)
T smart00488 71 VSEIEKRLEELRKL 84 (289)
T ss_pred HHHHHHHHHHHHhc
Confidence 5567766777665
No 192
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=95.96 E-value=0.042 Score=63.84 Aligned_cols=92 Identities=11% Similarity=0.182 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhC-CCeEEEeecCCCHHHHHHHHHhhcCC---CCceEEEEe
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS-GVNCVQLVGSMSIPARDAAINRFTED---PDCKIFLMS 628 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~-g~~~~~i~g~~~~~~r~~~i~~F~~~---~~~~vll~s 628 (723)
=...+.+.|..+.. .++ +++||......++.++..|... ++. +.+.|. ..+.++++.|.+. ++..|| +.
T Consensus 519 ~~~~~~~~i~~l~~-~~g-g~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL-~g 591 (697)
T PRK11747 519 HTAEMAEFLPELLE-KHK-GSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVL-FG 591 (697)
T ss_pred HHHHHHHHHHHHHh-cCC-CEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEE-EE
Confidence 35677777777765 343 4677777777777888887643 333 344453 3567888777642 233344 45
Q ss_pred cCCCccccccc--ccCEEEEECCCC
Q 004925 629 LKAGGVALNLT--VASHVFLMDPWW 651 (723)
Q Consensus 629 ~~~~~eGlnL~--~a~~vI~~d~~w 651 (723)
+.++.||+|++ .++.||+.-.|+
T Consensus 592 ~~sf~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 592 LQSFAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred eccccccccCCCCceEEEEEEcCCC
Confidence 69999999998 478888887776
No 193
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.93 E-value=0.06 Score=62.95 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCC-------eEEEeecCCCHHHHHHHHHhhcCC---CCce
Q 004925 554 IEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGV-------NCVQLVGSMSIPARDAAINRFTED---PDCK 623 (723)
Q Consensus 554 l~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~-------~~~~i~g~~~~~~r~~~i~~F~~~---~~~~ 623 (723)
+..+.+.|..+.+..+ ..+|||...-..++.+...+...|+ +...+-+.. ..++..++++|... +..-
T Consensus 507 ~~~l~~~i~~~~~~~p-gg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~-~~~~~~~l~~f~~~~~~~~ga 584 (705)
T TIGR00604 507 VRNLGELLVEFSKIIP-DGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKD-AQETSDALERYKQAVSEGRGA 584 (705)
T ss_pred HHHHHHHHHHHhhcCC-CcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCC-cchHHHHHHHHHHHHhcCCce
Confidence 4566666666665445 4778888888777777777665432 233444432 25788999999752 1223
Q ss_pred EEEEec--CCCccccccc--ccCEEEEECCCC-Ch------------------------------hhHHHHHHhhhhcCC
Q 004925 624 IFLMSL--KAGGVALNLT--VASHVFLMDPWW-NP------------------------------AVEQQAQDRIHRIGQ 668 (723)
Q Consensus 624 vll~s~--~~~~eGlnL~--~a~~vI~~d~~w-n~------------------------------~~~~Q~iGRi~R~Gq 668 (723)
+|+++ ...+||||+. .+..||+.-.|+ ++ ....|++||+.|--+
T Consensus 585 -vL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~ 663 (705)
T TIGR00604 585 -VLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKD 663 (705)
T ss_pred -EEEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcC
Confidence 44455 6789999998 488899988886 33 123499999999776
Q ss_pred cccEEE
Q 004925 669 YKPIRI 674 (723)
Q Consensus 669 ~~~V~v 674 (723)
...+.+
T Consensus 664 D~G~ii 669 (705)
T TIGR00604 664 DYGSIV 669 (705)
T ss_pred ceEEEE
Confidence 665433
No 194
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=95.73 E-value=0.074 Score=48.12 Aligned_cols=47 Identities=6% Similarity=0.057 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHhhcCCCCceEEEEecCCCccccccc--ccCEEEEECCCC
Q 004925 604 MSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLT--VASHVFLMDPWW 651 (723)
Q Consensus 604 ~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~--~a~~vI~~d~~w 651 (723)
....+...+++.|.+..+.- +|+++...+||+|++ .++.||+.-.|+
T Consensus 31 ~~~~~~~~~l~~f~~~~~~~-iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 31 EDGKETGKLLEKYVEACENA-ILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred CChhHHHHHHHHHHHcCCCE-EEEEccceecceecCCCCeeEEEEEecCC
Confidence 33445788999998753323 456667799999998 467788877665
No 195
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=95.68 E-value=0.086 Score=61.27 Aligned_cols=39 Identities=21% Similarity=0.084 Sum_probs=30.4
Q ss_pred cCChHHHHHHHHHHHHhccCC----CCCCcccCCCCCcHHHHH
Q 004925 28 TPLLRYQKEWLAWALKQEESA----IRGGILADEMGMGKTIQA 66 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~----~~g~iLad~~GlGKT~~a 66 (723)
...||-|.+++..+.+..... .+.+++=.+||+|||+-=
T Consensus 24 ~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaY 66 (697)
T PRK11747 24 FIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSY 66 (697)
T ss_pred CCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHH
Confidence 478999999999988777652 144566779999999864
No 196
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.65 E-value=0.032 Score=53.82 Aligned_cols=57 Identities=28% Similarity=0.295 Sum_probs=38.3
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhh
Q 004925 29 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 107 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l 107 (723)
.|-+-|++++..++.... +-.+|.-..|+|||.+.-.+...+... . ..+++++|.+-
T Consensus 1 ~L~~~Q~~a~~~~l~~~~---~~~~l~G~aGtGKT~~l~~~~~~~~~~-g------------------~~v~~~apT~~ 57 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGD---RVSVLQGPAGTGKTTLLKALAEALEAA-G------------------KRVIGLAPTNK 57 (196)
T ss_dssp -S-HHHHHHHHHHHHCTC---SEEEEEESTTSTHHHHHHHHHHHHHHT-T--------------------EEEEESSHH
T ss_pred CCCHHHHHHHHHHHhcCC---eEEEEEECCCCCHHHHHHHHHHHHHhC-C------------------CeEEEECCcHH
Confidence 367899999999876421 346777899999998876555544332 1 58899999653
No 197
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.43 E-value=0.056 Score=62.93 Aligned_cols=66 Identities=24% Similarity=0.263 Sum_probs=47.1
Q ss_pred ccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechh
Q 004925 27 ITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVA 106 (723)
Q Consensus 27 ~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~ 106 (723)
...|-+-|++++..+... +-.+|...+|+|||.++-+++..+..... ..++++++|..
T Consensus 321 ~~~l~~~Q~~Ai~~~~~~-----~~~iitGgpGTGKTt~l~~i~~~~~~~~~-----------------~~~v~l~ApTg 378 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQH-----KVVILTGGPGTGKTTITRAIIELAEELGG-----------------LLPVGLAAPTG 378 (720)
T ss_pred CCCCCHHHHHHHHHHHhC-----CeEEEECCCCCCHHHHHHHHHHHHHHcCC-----------------CceEEEEeCch
Confidence 347889999999987643 56789999999999988776665443321 14678889977
Q ss_pred hHHHHHHH
Q 004925 107 AVTQWVSE 114 (723)
Q Consensus 107 l~~qW~~e 114 (723)
-......+
T Consensus 379 ~AA~~L~e 386 (720)
T TIGR01448 379 RAAKRLGE 386 (720)
T ss_pred HHHHHHHH
Confidence 66554433
No 198
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=95.36 E-value=0.024 Score=55.04 Aligned_cols=74 Identities=18% Similarity=0.127 Sum_probs=59.5
Q ss_pred ccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechh
Q 004925 27 ITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVA 106 (723)
Q Consensus 27 ~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~ 106 (723)
+.-+||-|.+.+..|... ..+ .+.++-.-||-|||.+.+=+++..+..+. +-+.++||++
T Consensus 21 ~iliR~~Q~~ia~~mi~~-~~~-~n~v~QlnMGeGKTsVI~Pmla~~LAdg~------------------~LvrviVpk~ 80 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISP-PSG-KNSVMQLNMGEGKTSVIVPMLALALADGS------------------RLVRVIVPKA 80 (229)
T ss_pred CceeeHHHHHHHHHHhCC-CCC-CCeEeeecccCCccchHHHHHHHHHcCCC------------------cEEEEEcCHH
Confidence 457899999999999864 334 78889999999999998766666655443 5678999999
Q ss_pred hHHHHHHHHHhhcC
Q 004925 107 AVTQWVSEINRFTS 120 (723)
Q Consensus 107 l~~qW~~ei~~~~~ 120 (723)
|+.|-.+-+...++
T Consensus 81 Ll~q~~~~L~~~lg 94 (229)
T PF12340_consen 81 LLEQMRQMLRSRLG 94 (229)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887765
No 199
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.20 E-value=0.078 Score=59.94 Aligned_cols=67 Identities=22% Similarity=0.270 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhhH-HH
Q 004925 32 RYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAV-TQ 110 (723)
Q Consensus 32 p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~-~q 110 (723)
+.|+.++..++.. +-.+|.-.+|+|||.++..++..+.......+ ...+++++|.+-. ..
T Consensus 148 ~~Qk~A~~~al~~-----~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~--------------~~~I~l~APTGkAA~r 208 (586)
T TIGR01447 148 NWQKVAVALALKS-----NFSLITGGPGTGKTTTVARLLLALVKQSPKQG--------------KLRIALAAPTGKAAAR 208 (586)
T ss_pred HHHHHHHHHHhhC-----CeEEEEcCCCCCHHHHHHHHHHHHHHhccccC--------------CCcEEEECCcHHHHHH
Confidence 7899998888775 66789999999999998777766543322100 1368899997643 44
Q ss_pred HHHHHHh
Q 004925 111 WVSEINR 117 (723)
Q Consensus 111 W~~ei~~ 117 (723)
..+-+..
T Consensus 209 L~e~~~~ 215 (586)
T TIGR01447 209 LAESLRK 215 (586)
T ss_pred HHHHHHh
Confidence 4443433
No 200
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.20 E-value=0.07 Score=60.47 Aligned_cols=59 Identities=22% Similarity=0.206 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhhH
Q 004925 30 LLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAV 108 (723)
Q Consensus 30 L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~ 108 (723)
.-++|+.++...+.. +-.+|.-.+|+|||.++..++..+...... +...+++++|..-.
T Consensus 153 ~~d~Qk~Av~~a~~~-----~~~vItGgpGTGKTt~v~~ll~~l~~~~~~---------------~~~~i~l~APTgkA 211 (615)
T PRK10875 153 EVDWQKVAAAVALTR-----RISVISGGPGTGKTTTVAKLLAALIQLADG---------------ERCRIRLAAPTGKA 211 (615)
T ss_pred CCHHHHHHHHHHhcC-----CeEEEEeCCCCCHHHHHHHHHHHHHHhcCC---------------CCcEEEEECCcHHH
Confidence 347999999887765 667899999999999987777665432211 01367888997644
No 201
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.011 Score=62.77 Aligned_cols=50 Identities=32% Similarity=0.756 Sum_probs=45.3
Q ss_pred cccccccccCCCCCcccccCCccchhhhhhhhcCc---CCCCCCCCCCCcccc
Q 004925 466 QQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASK---FVAKCPTCSIPLTVD 515 (723)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 515 (723)
...|++|...+..|..++|||+||-.|+....... +-..||+|+..+...
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK 238 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence 67899999999999999999999999998887776 788999999888763
No 202
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=95.14 E-value=0.01 Score=40.32 Aligned_cols=38 Identities=50% Similarity=1.122 Sum_probs=30.5
Q ss_pred ccccccCCCCC-cccccCCccchhhhhhhhcCcCCCCCCCC
Q 004925 469 CGLCNDLADDP-VVTNCGHAFCKACLFDSSASKFVAKCPTC 508 (723)
Q Consensus 469 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (723)
|++|.+...+| ++++|||.+|.+|+.+.... ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC--cCCCcCC
Confidence 57888888889 68999999999999988777 4677765
No 203
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=95.01 E-value=0.011 Score=42.69 Aligned_cols=46 Identities=33% Similarity=0.780 Sum_probs=39.6
Q ss_pred cccccccccCCCCCcccccCCc-cchhhhhhhhcCcCCCCCCCCCCCcc
Q 004925 466 QQVCGLCNDLADDPVVTNCGHA-FCKACLFDSSASKFVAKCPTCSIPLT 513 (723)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (723)
+..|.+|.+...+.++++|+|. +|.+|...... ....||.|+.+++
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~--~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLK--RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence 3568899999999999999999 99999998887 8899999998875
No 204
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=94.97 E-value=0.13 Score=46.53 Aligned_cols=44 Identities=5% Similarity=0.187 Sum_probs=30.0
Q ss_pred HHHHHHHhhcCCCC-ceEEEEecCC--Ccccccccc--cCEEEEECCCC
Q 004925 608 ARDAAINRFTEDPD-CKIFLMSLKA--GGVALNLTV--ASHVFLMDPWW 651 (723)
Q Consensus 608 ~r~~~i~~F~~~~~-~~vll~s~~~--~~eGlnL~~--a~~vI~~d~~w 651 (723)
+...+++.|.+..+ ...+|+++.. .+|||||+. ++.||+...|+
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 44688899986322 0124445455 899999984 77888887775
No 205
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=94.91 E-value=5.4 Score=47.76 Aligned_cols=83 Identities=17% Similarity=0.279 Sum_probs=54.6
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhhH-----HHHHHHHHhhcCCCCc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAV-----TQWVSEINRFTSVGST 124 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~-----~qW~~ei~~~~~~~~~ 124 (723)
.+.++|.+.|+|||++|-..+.. .. ..+.++-++|...+ .-|..-|.+.. ..
T Consensus 1160 d~v~vga~~gsgkt~~ae~a~l~----~~----------------~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~---G~ 1216 (1674)
T KOG0951|consen 1160 DNVLVGAPNGSGKTACAELALLR----PD----------------TIGRAVYIAPLEEIADEQYRDWEKKFSKLL---GL 1216 (1674)
T ss_pred ceEEEecCCCCchhHHHHHHhcC----Cc----------------cceEEEEecchHHHHHHHHHHHHHhhcccc---Cc
Confidence 77899999999999998433332 11 12688999997543 45655555552 34
Q ss_pred EEEEEeCCCCCCCccccCCCCEEEechhhhHH
Q 004925 125 KVLIYHGSNRERSAKQFSEFDFVITTYSIIEA 156 (723)
Q Consensus 125 ~~~~~~g~~~~~~~~~~~~~~ivi~t~~~l~~ 156 (723)
.+.-..|. ....-..+...+++|.|++.+..
T Consensus 1217 ~~~~l~ge-~s~~lkl~~~~~vii~tpe~~d~ 1247 (1674)
T KOG0951|consen 1217 RIVKLTGE-TSLDLKLLQKGQVIISTPEQWDL 1247 (1674)
T ss_pred eEEecCCc-cccchHHhhhcceEEechhHHHH
Confidence 44444443 33444556778999999998643
No 206
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=94.50 E-value=0.018 Score=39.66 Aligned_cols=40 Identities=40% Similarity=0.984 Sum_probs=34.6
Q ss_pred ccccccCCCCCc-ccccCCccchhhhhhhhcCcCCCCCCCC
Q 004925 469 CGLCNDLADDPV-VTNCGHAFCKACLFDSSASKFVAKCPTC 508 (723)
Q Consensus 469 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (723)
|.+|.+....+. ++.|+|.||..|+...........||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 577888888888 9999999999999999887777778865
No 207
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.48 E-value=0.18 Score=57.50 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhccC-CCCCC-cccCCCCCcHHHHHHHHHhcCccc
Q 004925 33 YQKEWLAWALKQEES-AIRGG-ILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 33 ~Q~~~~~~~~~~~~~-~~~g~-iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
.|.+.+..+.+.... ...+. |+....|+|||.++..+...+...
T Consensus 20 GQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 20 GQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 355555554443332 23444 788999999999999888876543
No 208
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=94.29 E-value=0.042 Score=41.94 Aligned_cols=45 Identities=22% Similarity=0.395 Sum_probs=39.7
Q ss_pred ccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcc
Q 004925 467 QVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 513 (723)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (723)
..|++|.....+|++.+|||.||.+|+.+.... ...||.|+.++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~--~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLS--HGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH--CCCCCCCcCCCC
Confidence 368999999999999999999999999988876 568999987764
No 209
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=0.03 Score=54.99 Aligned_cols=52 Identities=29% Similarity=0.759 Sum_probs=43.6
Q ss_pred cccccccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcc
Q 004925 460 ADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 513 (723)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (723)
.........|-.|.+...+|..++|||+||-+|+.+-..+... ||.|+..+.
T Consensus 233 ~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~e--CPlCR~~~~ 284 (293)
T KOG0317|consen 233 SSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAE--CPLCREKFQ 284 (293)
T ss_pred ccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccC--CCcccccCC
Confidence 3345566789999999999999999999999999877665544 999999876
No 210
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=94.25 E-value=0.071 Score=61.50 Aligned_cols=87 Identities=23% Similarity=0.198 Sum_probs=64.6
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hhhHHHHHHHHHhhcCCCCcEEEE
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAAVTQWVSEINRFTSVGSTKVLI 128 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~l~~qW~~ei~~~~~~~~~~~~~ 128 (723)
.+.++.+++|.|||+.+-..+...+..++ .+++++++| ++|+..-.+.+.+.+..+.++++.
T Consensus 944 ~~~~~g~ptgsgkt~~ae~a~~~~~~~~p-----------------~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie 1006 (1230)
T KOG0952|consen 944 LNFLLGAPTGSGKTVVAELAIFRALSYYP-----------------GSKVVYIAPDKALVKERSDDWSKRDELPGIKVIE 1006 (1230)
T ss_pred hhhhhcCCccCcchhHHHHHHHHHhccCC-----------------CccEEEEcCCchhhcccccchhhhcccCCceeEe
Confidence 56789999999999987544444444333 278999999 688877666666655544778888
Q ss_pred EeCCCCCCCccccCCCCEEEechhhh
Q 004925 129 YHGSNRERSAKQFSEFDFVITTYSII 154 (723)
Q Consensus 129 ~~g~~~~~~~~~~~~~~ivi~t~~~l 154 (723)
..|..... .....+.+++|+|++..
T Consensus 1007 ~tgd~~pd-~~~v~~~~~~ittpek~ 1031 (1230)
T KOG0952|consen 1007 LTGDVTPD-VKAVREADIVITTPEKW 1031 (1230)
T ss_pred ccCccCCC-hhheecCceEEcccccc
Confidence 88876555 56678899999999975
No 211
>PRK06526 transposase; Provisional
Probab=94.08 E-value=0.095 Score=52.70 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=21.7
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCcc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
++.+|..++|+|||..+.++......
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 78899999999999999888765543
No 212
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=0.025 Score=51.26 Aligned_cols=48 Identities=40% Similarity=0.888 Sum_probs=38.6
Q ss_pred ccccccccccCCCC--CcccccCCccchhhhhhhhcCcCCCCCCCCCCCccc
Q 004925 465 VQQVCGLCNDLADD--PVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 514 (723)
Q Consensus 465 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (723)
...-|++|.+..+. |+-+.|||+||..|+++..+. ..+||.|+..+..
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~--~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN--TNKCPTCRKKITH 179 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHh--CCCCCCcccccch
Confidence 34669999977665 556999999999999988775 5789999886654
No 213
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.02 E-value=0.033 Score=58.74 Aligned_cols=48 Identities=33% Similarity=0.797 Sum_probs=41.6
Q ss_pred ccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCccc
Q 004925 465 VQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 514 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (723)
....|.+|.+....|++++|+|.||..|+...... ...||.|+..+..
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~--~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN--QPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC--CCCCCCCCCcccc
Confidence 45689999999999999999999999999987765 3589999998753
No 214
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.99 E-value=0.17 Score=51.34 Aligned_cols=24 Identities=29% Similarity=0.094 Sum_probs=19.3
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcC
Q 004925 50 RGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
.+.+|.-++|+|||..|-+++..+
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH
Confidence 456899999999999997766544
No 215
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.94 E-value=0.14 Score=55.73 Aligned_cols=88 Identities=14% Similarity=0.109 Sum_probs=50.1
Q ss_pred ccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hhhHHHHHHHHHhhcCCC-Cc-EEEEEe
Q 004925 54 LADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAAVTQWVSEINRFTSVG-ST-KVLIYH 130 (723)
Q Consensus 54 Lad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~l~~qW~~ei~~~~~~~-~~-~~~~~~ 130 (723)
.-+++|+|||+++.++|......+. +..|++|- .++++....-+..-.... .+ ..+.+.
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgy------------------r~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~ 63 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGY------------------RNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININ 63 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhch------------------hhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcC
Confidence 3578999999999999998776554 56677665 778876655442211000 00 111111
Q ss_pred CCC----CC-CCccccCCCCEEEechhhhHHhhh
Q 004925 131 GSN----RE-RSAKQFSEFDFVITTYSIIEADYR 159 (723)
Q Consensus 131 g~~----~~-~~~~~~~~~~ivi~t~~~l~~~~~ 159 (723)
+.. +. .......+..|+++|.+.+-.+.-
T Consensus 64 d~~i~ikkvn~fsehnd~iei~fttiq~l~~d~~ 97 (812)
T COG3421 64 DENIEIKKVNNFSEHNDAIEIYFTTIQGLFSDFT 97 (812)
T ss_pred CceeeeeeecccCccCCceEEEEeehHHHHHHHH
Confidence 111 00 011122445699999998877643
No 216
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=93.68 E-value=0.053 Score=37.95 Aligned_cols=39 Identities=38% Similarity=0.962 Sum_probs=30.3
Q ss_pred ccccccCC---CCCcccccCCccchhhhhhhhcCcCCCCCCCCC
Q 004925 469 CGLCNDLA---DDPVVTNCGHAFCKACLFDSSASKFVAKCPTCS 509 (723)
Q Consensus 469 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (723)
|+.|.... ..+.+++|||++|.+|+.... .....||.|+
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~ 43 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLK--GKSVKCPICR 43 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHHHHHHHHhhc--CCCCCCcCCC
Confidence 44555444 457899999999999998887 6678888886
No 217
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=93.66 E-value=0.62 Score=52.93 Aligned_cols=85 Identities=26% Similarity=0.318 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hhhHHHHH
Q 004925 34 QKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAAVTQWV 112 (723)
Q Consensus 34 Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~l~~qW~ 112 (723)
|.+.+..+......+ +..++-..+|+|||+..+.-+........ .+++||.+| ..|..|+.
T Consensus 2 Q~~~~~~i~~al~~~-~~lliEA~TGtGKTlAYLlpal~~~~~~~-----------------~~rvlIstpT~~Lq~Ql~ 63 (636)
T TIGR03117 2 QALFYLNCLTSLRQK-RIGMLEASTGVGKTLAMIMAALTMLKERP-----------------DQKIAIAVPTLALMGQLW 63 (636)
T ss_pred HHHHHHHHHHHHhcC-CeEEEEcCCCCcHHHHHHHHHHHHHHhcc-----------------CceEEEECCcHHHHHHHH
Confidence 788888888877766 66778889999999876544332221110 168999999 57889999
Q ss_pred HHHHhhc-C--CCCcEEEEEeCCCCCC
Q 004925 113 SEINRFT-S--VGSTKVLIYHGSNRER 136 (723)
Q Consensus 113 ~ei~~~~-~--~~~~~~~~~~g~~~~~ 136 (723)
+++.... . ...+++..+.|..+--
T Consensus 64 ~~l~~l~~~~l~~~i~~~~lkGr~nYl 90 (636)
T TIGR03117 64 SELERLTAEGLAGPVQAGFFPGSQEFV 90 (636)
T ss_pred HHHHHHHHhhcCCCeeEEEEECCcccc
Confidence 9877654 1 1256666666755443
No 218
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=0.041 Score=52.45 Aligned_cols=59 Identities=36% Similarity=0.744 Sum_probs=49.8
Q ss_pred cccccccccccccCCCCCcccccCCccchhhhhhhhcCcC-CCCCCCCCCCccccccccc
Q 004925 462 AEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKF-VAKCPTCSIPLTVDFTANE 520 (723)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 520 (723)
.+.....|.+|.+...+|+++.|||.||=-|+=+-..... ...||+|...+..+.....
T Consensus 43 ~~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPl 102 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPL 102 (230)
T ss_pred CCCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEee
Confidence 3556788999999999999999999999999988887775 6677999999987755443
No 219
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.51 E-value=0.49 Score=50.53 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=34.2
Q ss_pred eeEEEEeeccccccCCCcH---HHHHHHhhhc--CceEEEeCcCCCCchhhHHHHHHHhcc
Q 004925 243 KWERIILDEAHFIKDRRSN---TAKAVLALES--SYKWALSGTPLQNRVGELYSLVRFLQI 298 (723)
Q Consensus 243 ~~~~vIiDEaH~~kn~~s~---~~~~l~~l~~--~~~l~LTaTP~~n~~~dl~~~l~lL~~ 298 (723)
..++||||++.+....... ....+..... ...+.|+||--.+...+++..+..+++
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~ 314 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSY 314 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCC
Confidence 4689999999887432212 1122222222 345779999877777777766665543
No 220
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.42 E-value=0.44 Score=42.83 Aligned_cols=25 Identities=28% Similarity=0.183 Sum_probs=20.2
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~ 74 (723)
+..++..++|+|||..+-.++....
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhh
Confidence 6678899999999988877766553
No 221
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.40 E-value=0.58 Score=46.21 Aligned_cols=25 Identities=32% Similarity=0.124 Sum_probs=20.4
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~ 74 (723)
+..+|.-+.|+|||..+.++.....
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6678899999999999977776543
No 222
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.34 E-value=0.86 Score=45.35 Aligned_cols=24 Identities=17% Similarity=-0.046 Sum_probs=19.1
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcC
Q 004925 50 RGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
+..+|.-+.|+|||..+.++....
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~ 69 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAEL 69 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999998876666543
No 223
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=0.028 Score=62.76 Aligned_cols=47 Identities=34% Similarity=0.887 Sum_probs=40.2
Q ss_pred ccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCccc
Q 004925 467 QVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 514 (723)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (723)
-.|+.|++.+-+-++..|+|.||.+|+.....+. --+||.|.+.|-+
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etR-qRKCP~Cn~aFga 690 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVFCEECVQTRYETR-QRKCPKCNAAFGA 690 (698)
T ss_pred eeCCCccCchhhHHHHhcchHHHHHHHHHHHHHh-cCCCCCCCCCCCc
Confidence 4599999999999999999999999997776654 5579999887753
No 224
>PLN03025 replication factor C subunit; Provisional
Probab=93.20 E-value=0.67 Score=48.55 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=32.8
Q ss_pred eeEEEEeeccccccCCC-cHHHHHHHhhhcCceEEEeCcCCCCchhhHHHHHHHhcc
Q 004925 243 KWERIILDEAHFIKDRR-SNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQI 298 (723)
Q Consensus 243 ~~~~vIiDEaH~~kn~~-s~~~~~l~~l~~~~~l~LTaTP~~n~~~dl~~~l~lL~~ 298 (723)
.+.+||+||+|.+.... ....+.+.......++++++++...-+..|.+.+..+..
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f 155 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRF 155 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccC
Confidence 47899999999985432 111222222234456778877665555566666555443
No 225
>PRK04296 thymidine kinase; Provisional
Probab=93.04 E-value=0.13 Score=49.44 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=18.4
Q ss_pred cccCCCCCcHHHHHHHHHhcCcc
Q 004925 53 ILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 53 iLad~~GlGKT~~al~~i~~~~~ 75 (723)
++.-+||+|||..++.++.....
T Consensus 6 litG~~GsGKTT~~l~~~~~~~~ 28 (190)
T PRK04296 6 FIYGAMNSGKSTELLQRAYNYEE 28 (190)
T ss_pred EEECCCCCHHHHHHHHHHHHHHH
Confidence 56778999999999888876543
No 226
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=92.92 E-value=0.033 Score=38.55 Aligned_cols=31 Identities=42% Similarity=1.023 Sum_probs=19.2
Q ss_pred ccccccCCCC----CcccccCCccchhhhhhhhcCc
Q 004925 469 CGLCNDLADD----PVVTNCGHAFCKACLFDSSASK 500 (723)
Q Consensus 469 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 500 (723)
|++|.+ ..+ |.++.|||.+|.+|+.......
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence 455555 333 8899999999999999887754
No 227
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.77 E-value=0.22 Score=51.07 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=20.0
Q ss_pred CCcccCCCCCcHHHHHHHHHhcCcc
Q 004925 51 GGILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 51 g~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
+.++..++|+|||..|-++...++.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~ 84 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHR 84 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5678899999999999777665544
No 228
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.70 E-value=0.22 Score=58.28 Aligned_cols=76 Identities=17% Similarity=0.271 Sum_probs=56.9
Q ss_pred Ccc-CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec
Q 004925 26 LIT-PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP 104 (723)
Q Consensus 26 ~~~-~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P 104 (723)
|.. ++||.|++.+..+.+....+ +.+++-.++|+|||+..|..+.......+. ..++++.+.
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~-~~~llEsPTGtGKTlslL~~aL~~~~~~~~----------------~~kIiy~sR 68 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRG-DEAILEMPSGTGKTISLLSLILAYQQEKPE----------------VRKIIYASR 68 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccC-CceEEeCCCCCCccHHHHHHHHHHHHhccc----------------cccEEEEcc
Confidence 344 45999999999999988888 899999999999999887666554332111 135566666
Q ss_pred h-hhHHHHHHHHHhh
Q 004925 105 V-AAVTQWVSEINRF 118 (723)
Q Consensus 105 ~-~l~~qW~~ei~~~ 118 (723)
. +-+.|-.+|+++-
T Consensus 69 ThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 69 THSQLEQATEELRKL 83 (705)
T ss_pred cchHHHHHHHHHHhh
Confidence 4 5689999999883
No 229
>PF13245 AAA_19: Part of AAA domain
Probab=92.60 E-value=0.21 Score=39.72 Aligned_cols=51 Identities=22% Similarity=0.181 Sum_probs=34.5
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechh-hHHHHHHHH
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVA-AVTQWVSEI 115 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~-l~~qW~~ei 115 (723)
+-.++--.+|+|||.+++..+.......... .+.+|+++|.. .+..-.+.+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~---------------~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADP---------------GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCC---------------CCeEEEECCCHHHHHHHHHHH
Confidence 3355688999999999988888776321110 16899999965 445444444
No 230
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.47 E-value=0.74 Score=51.89 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=21.7
Q ss_pred CCC-cccCCCCCcHHHHHHHHHhcCcc
Q 004925 50 RGG-ILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 50 ~g~-iLad~~GlGKT~~al~~i~~~~~ 75 (723)
.+. |+..+.|+|||.++..++..+..
T Consensus 38 pHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 38 HHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444 88999999999999888887765
No 231
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.35 E-value=0.74 Score=50.24 Aligned_cols=43 Identities=23% Similarity=0.043 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhccC-CCCC-CcccCCCCCcHHHHHHHHHhcCcc
Q 004925 33 YQKEWLAWALKQEES-AIRG-GILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 33 ~Q~~~~~~~~~~~~~-~~~g-~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
.|...+..+...... ...+ .|+..+.|+|||.+|..++..+..
T Consensus 22 GQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 22 HQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 455555544433332 2233 489999999999999888887654
No 232
>PHA02929 N1R/p28-like protein; Provisional
Probab=92.35 E-value=0.1 Score=51.05 Aligned_cols=47 Identities=28% Similarity=0.737 Sum_probs=37.5
Q ss_pred ccccccccccCCCC--------CcccccCCccchhhhhhhhcCcCCCCCCCCCCCcc
Q 004925 465 VQQVCGLCNDLADD--------PVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 513 (723)
Q Consensus 465 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (723)
....|.+|.+...+ +++.+|+|.||..|+..-.. ....||+|+..+.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~--~~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK--EKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh--cCCCCCCCCCEee
Confidence 35689999986443 35779999999999987665 4679999999876
No 233
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.35 E-value=0.063 Score=52.07 Aligned_cols=50 Identities=34% Similarity=0.663 Sum_probs=44.0
Q ss_pred cccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcc
Q 004925 464 HVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 513 (723)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (723)
..+..|.+|.+..+.|..+.|||+||-.|+.-.........||.|++..-
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 34677999999999999999999999999988777777888999998754
No 234
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.32 E-value=0.63 Score=54.32 Aligned_cols=42 Identities=17% Similarity=0.118 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhc-cCCCCCC-cccCCCCCcHHHHHHHHHhcCcc
Q 004925 34 QKEWLAWALKQE-ESAIRGG-ILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 34 Q~~~~~~~~~~~-~~~~~g~-iLad~~GlGKT~~al~~i~~~~~ 75 (723)
|...+..+.+.. .+.+.++ |+..+.|+|||.+|..++..+..
T Consensus 21 Qe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 21 QSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 444444333322 2344666 78999999999999888877654
No 235
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.19 E-value=0.85 Score=51.55 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=21.0
Q ss_pred CCcccCCCCCcHHHHHHHHHhcCcc
Q 004925 51 GGILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 51 g~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
..|+..+.|+|||.+|..++..+..
T Consensus 39 AyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4489999999999999888887654
No 236
>PHA02533 17 large terminase protein; Provisional
Probab=92.07 E-value=1.2 Score=49.90 Aligned_cols=41 Identities=24% Similarity=0.241 Sum_probs=29.6
Q ss_pred CccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHh
Q 004925 26 LITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVL 71 (723)
Q Consensus 26 ~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~ 71 (723)
....|.|+|++.+..+... +-.++.-.=..|||..+.+++.
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~-----R~~ii~~aRq~GKStl~a~~al 96 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKN-----RFNACNLSRQLGKTTVVAIFLL 96 (534)
T ss_pred eecCCcHHHHHHHHHHhcC-----eEEEEEEcCcCChHHHHHHHHH
Confidence 3468999999988876422 3336667788999998865554
No 237
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=91.90 E-value=1.1 Score=49.34 Aligned_cols=26 Identities=23% Similarity=0.096 Sum_probs=20.7
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCcc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
+..+|..++|+|||..+-++......
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~ 174 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILE 174 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45788999999999998777766544
No 238
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=91.88 E-value=0.5 Score=49.47 Aligned_cols=48 Identities=17% Similarity=0.081 Sum_probs=37.2
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCcccc
Q 004925 29 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIR 77 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~ 77 (723)
.++|+|......++.+ .+..+.-|+..+.|+|||..|..++..+.-..
T Consensus 3 ~~yPWl~~~~~~~~~~-~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~ 50 (328)
T PRK05707 3 EIYPWQQSLWQQLAGR-GRHPHAYLLHGPAGIGKRALAERLAAALLCEA 50 (328)
T ss_pred cCCCCcHHHHHHHHHC-CCcceeeeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 4589999999888876 33324456789999999999999988877543
No 239
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=91.87 E-value=0.44 Score=42.42 Aligned_cols=46 Identities=17% Similarity=0.075 Sum_probs=31.7
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhhHHHHHHH
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSE 114 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~~qW~~e 114 (723)
+..+|.-++|+|||..+..++....... ..++++.+......+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~ 48 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG-------------------GGVIYIDGEDILEEVLDQ 48 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC-------------------CCEEEECCEEccccCHHH
Confidence 4567889999999999988887665432 256777776555444433
No 240
>PRK08181 transposase; Validated
Probab=91.81 E-value=1.2 Score=45.01 Aligned_cols=46 Identities=24% Similarity=0.026 Sum_probs=31.5
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCcc
Q 004925 29 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
.+-+.|...+..+-.....+ .+.+|..++|+|||..+.++......
T Consensus 87 ~~~~~~~~~L~~~~~~~~~~-~nlll~Gp~GtGKTHLa~Aia~~a~~ 132 (269)
T PRK08181 87 MVSKAQVMAIAAGDSWLAKG-ANLLLFGPPGGGKSHLAAAIGLALIE 132 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcC-ceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 35567777665542222233 78899999999999998887765443
No 241
>CHL00181 cbbX CbbX; Provisional
Probab=91.50 E-value=0.42 Score=49.12 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=19.0
Q ss_pred CcccCCCCCcHHHHHHHHHhcCc
Q 004925 52 GILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~ 74 (723)
.+|.-++|+|||..|-+++....
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~ 84 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILY 84 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 57889999999999988766543
No 242
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=91.44 E-value=1.1 Score=49.26 Aligned_cols=24 Identities=29% Similarity=0.093 Sum_probs=18.8
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcC
Q 004925 50 RGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
.+.+|..++|+|||..+-++....
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l 165 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYI 165 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHH
Confidence 557789999999998886666543
No 243
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.31 E-value=1.1 Score=48.85 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=33.8
Q ss_pred eeEEEEeeccccccCCCcHHHHHHHhh------hcCceEEEeCcCCCCchhhHHHHHHHhcc
Q 004925 243 KWERIILDEAHFIKDRRSNTAKAVLAL------ESSYKWALSGTPLQNRVGELYSLVRFLQI 298 (723)
Q Consensus 243 ~~~~vIiDEaH~~kn~~s~~~~~l~~l------~~~~~l~LTaTP~~n~~~dl~~~l~lL~~ 298 (723)
.+++||||-+-...... .....+..+ .....++|++|+-.....+++..+..+++
T Consensus 299 ~~DlVlIDt~G~~~~d~-~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRDK-RLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCCH-HHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 36999999986643322 222222222 12446789999877777777777766553
No 244
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.24 E-value=0.98 Score=49.74 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=21.2
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCcc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
+..|+..+.|+|||.+|..++..+..
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHHcC
Confidence 45789999999999999888765544
No 245
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.11 E-value=0.52 Score=52.55 Aligned_cols=44 Identities=14% Similarity=0.041 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcc-CCCCCC-cccCCCCCcHHHHHHHHHhcCccc
Q 004925 33 YQKEWLAWALKQEE-SAIRGG-ILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 33 ~Q~~~~~~~~~~~~-~~~~g~-iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
.|...+..+.+... +...++ |+..+.|+|||.+|..++..+...
T Consensus 20 Gq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 20 GQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34444444444332 333554 789999999999998888876543
No 246
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.98 E-value=0.2 Score=48.87 Aligned_cols=53 Identities=25% Similarity=0.599 Sum_probs=45.3
Q ss_pred ccccccccccccccCCCCCcccc-cCCccchhhhhhhhcCcCCCCCCCCCCCcc
Q 004925 461 DAEHVQQVCGLCNDLADDPVVTN-CGHAFCKACLFDSSASKFVAKCPTCSIPLT 513 (723)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (723)
.....+.+|+.|+..+.-|-... |+|++|.-|+......+-.-.||.|.....
T Consensus 234 s~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 234 STGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 34556788999999999886555 999999999999999999999999987755
No 247
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=90.82 E-value=1.4 Score=47.97 Aligned_cols=26 Identities=23% Similarity=0.124 Sum_probs=20.3
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCcc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
...+|..++|+|||..+-++......
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~ 162 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILE 162 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 34578999999999998777765543
No 248
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=90.82 E-value=0.73 Score=46.89 Aligned_cols=43 Identities=19% Similarity=0.069 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 31 LRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 31 ~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
-+.+..++..+......+.+-.+|.-+.|+|||..+-.++...
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 3444555555543333332346789999999999887766544
No 249
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=90.74 E-value=0.21 Score=37.43 Aligned_cols=43 Identities=37% Similarity=0.987 Sum_probs=23.3
Q ss_pred ccccccccCCCCCc-ccccCCccchhhhhhhhcCcCCCCCCCCCCCcc
Q 004925 467 QVCGLCNDLADDPV-VTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 513 (723)
Q Consensus 467 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (723)
--|..|.+....|+ +..|.|+||..|+.+...+ .||.|..+.-
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~----~CPvC~~Paw 51 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS----ECPVCHTPAW 51 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B-TTTGGGGTTT----B-SSS--B-S
T ss_pred cCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC----CCCCcCChHH
Confidence 35889999999997 7999999999999775554 3999988864
No 250
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=90.53 E-value=0.2 Score=33.34 Aligned_cols=39 Identities=38% Similarity=0.961 Sum_probs=30.4
Q ss_pred ccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCC
Q 004925 469 CGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTC 508 (723)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (723)
|.+|.+....+..+.|+|.+|..|+..... .....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHH-hCcCCCCCC
Confidence 456777777889999999999999987766 445567754
No 251
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=90.42 E-value=0.43 Score=55.59 Aligned_cols=72 Identities=19% Similarity=0.145 Sum_probs=53.1
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEech-h
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-A 106 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~-~ 106 (723)
..+||.|++++..+.....++ +++++=.++|+|||+..|..+........ ++++|.++. .
T Consensus 14 ~~~r~~Q~~~~~~v~~a~~~~-~~~~iEapTGtGKTl~yL~~al~~~~~~~------------------~~viist~t~~ 74 (654)
T COG1199 14 FEPRPEQREMAEAVAEALKGG-EGLLIEAPTGTGKTLAYLLPALAYAREEG------------------KKVIISTRTKA 74 (654)
T ss_pred CCCCHHHHHHHHHHHHHHcCC-CcEEEECCCCccHHHHHHHHHHHHHHHcC------------------CcEEEECCCHH
Confidence 488999999999988777766 67899999999999998776665544332 466666664 4
Q ss_pred hHHHHHHHHHhh
Q 004925 107 AVTQWVSEINRF 118 (723)
Q Consensus 107 l~~qW~~ei~~~ 118 (723)
+..|-..+....
T Consensus 75 lq~q~~~~~~~~ 86 (654)
T COG1199 75 LQEQLLEEDLPI 86 (654)
T ss_pred HHHHHHHhhcch
Confidence 667766665443
No 252
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=90.26 E-value=0.23 Score=51.10 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=26.4
Q ss_pred EEEEeeccccccCCCcHHHHHHHhhhcCceEEEeCcCCC
Q 004925 245 ERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQ 283 (723)
Q Consensus 245 ~~vIiDEaH~~kn~~s~~~~~l~~l~~~~~l~LTaTP~~ 283 (723)
.+||||||+++-.. ..--.+.+.....++.+||-|.+
T Consensus 353 ~FiIIDEaQNLTph--eikTiltR~G~GsKIVl~gd~aQ 389 (436)
T COG1875 353 SFIIIDEAQNLTPH--ELKTILTRAGEGSKIVLTGDPAQ 389 (436)
T ss_pred ceEEEehhhccCHH--HHHHHHHhccCCCEEEEcCCHHH
Confidence 58999999998443 12234445567789999998854
No 253
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=90.22 E-value=2 Score=48.45 Aligned_cols=25 Identities=28% Similarity=0.199 Sum_probs=19.6
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~ 74 (723)
...+|...+|+|||..+-++.....
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~ 339 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYAR 339 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3468889999999998877776544
No 254
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=90.18 E-value=1.9 Score=47.94 Aligned_cols=43 Identities=21% Similarity=0.063 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhccCC--CCCCcccCCCCCcHHHHHHHHHhcCcc
Q 004925 33 YQKEWLAWALKQEESA--IRGGILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 33 ~Q~~~~~~~~~~~~~~--~~g~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
.|...+..+......+ .+..|+..+.|+|||.+|-.++..+..
T Consensus 25 Gq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 25 GQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4555555544422222 246788999999999999888876654
No 255
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=90.13 E-value=1.4 Score=50.30 Aligned_cols=43 Identities=19% Similarity=0.150 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcc-CCCCCC-cccCCCCCcHHHHHHHHHhcCccc
Q 004925 34 QKEWLAWALKQEE-SAIRGG-ILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 34 Q~~~~~~~~~~~~-~~~~g~-iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
|...+..+.+... +...++ |+..+.|+|||.+|..++..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 4444444333332 233444 789999999999998888776653
No 256
>PRK06893 DNA replication initiation factor; Validated
Probab=89.97 E-value=1.9 Score=42.67 Aligned_cols=23 Identities=13% Similarity=-0.149 Sum_probs=18.5
Q ss_pred CcccCCCCCcHHHHHHHHHhcCc
Q 004925 52 GILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~ 74 (723)
.+|..++|+|||..+.++.....
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~ 64 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYL 64 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 47899999999998877776543
No 257
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=89.82 E-value=0.26 Score=34.06 Aligned_cols=42 Identities=38% Similarity=0.917 Sum_probs=31.2
Q ss_pred ccccccCCCCCcc-cccCCccchhhhhhhhcCcCCCCCCCCCCC
Q 004925 469 CGLCNDLADDPVV-TNCGHAFCKACLFDSSASKFVAKCPTCSIP 511 (723)
Q Consensus 469 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (723)
|.+|.+....+.. ..|+|.+|.+|+...... ....||.|+..
T Consensus 2 C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 2 CPICLEEFREPVVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCcCchhhhCceEecCCCChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 5667766655554 449999999999877665 66779998765
No 258
>PHA02926 zinc finger-like protein; Provisional
Probab=89.80 E-value=0.23 Score=47.02 Aligned_cols=52 Identities=21% Similarity=0.612 Sum_probs=39.8
Q ss_pred ccccccccccccCCC---------CCcccccCCccchhhhhhhhcCc----CCCCCCCCCCCccc
Q 004925 463 EHVQQVCGLCNDLAD---------DPVVTNCGHAFCKACLFDSSASK----FVAKCPTCSIPLTV 514 (723)
Q Consensus 463 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 514 (723)
...+.+|.+|.+..- -+++.+|+|.||..|+..=..+. ....||.|+..+..
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 335678999997632 26788999999999998776643 35669999998763
No 259
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=89.73 E-value=2.1 Score=47.03 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=20.6
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCcc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
...+|..++|+|||..+-++......
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~ 156 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHH
Confidence 45789999999999998777765543
No 260
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.69 E-value=0.34 Score=49.03 Aligned_cols=50 Identities=30% Similarity=0.705 Sum_probs=36.5
Q ss_pred cccccccccCCC-CC----cccccCCccchhhhhhhhcCcCCCCCCCCCCCccccc
Q 004925 466 QQVCGLCNDLAD-DP----VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDF 516 (723)
Q Consensus 466 ~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (723)
+..|+.|..... .| .+..|||.+|.+|+..... .+...||.|...+....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~-~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV-RGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhc-CCCCCCCCCCCccchhh
Confidence 357999996322 22 2336999999999988754 36679999988877543
No 261
>PRK08727 hypothetical protein; Validated
Probab=89.58 E-value=1.3 Score=43.94 Aligned_cols=25 Identities=36% Similarity=0.294 Sum_probs=19.2
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~ 74 (723)
...+|..++|+|||..+-++.....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~ 66 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAE 66 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3468899999999988877665433
No 262
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.56 E-value=1.8 Score=49.02 Aligned_cols=44 Identities=18% Similarity=0.062 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcc-CCCCCC-cccCCCCCcHHHHHHHHHhcCccc
Q 004925 33 YQKEWLAWALKQEE-SAIRGG-ILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 33 ~Q~~~~~~~~~~~~-~~~~g~-iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
.|...+..+.+... +...++ |+..+.|+|||.+|..++..+...
T Consensus 17 Gq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 17 GQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 35555555444333 233454 789999999999999888876643
No 263
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=89.49 E-value=2.4 Score=49.98 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=22.5
Q ss_pred CCC-CcccCCCCCcHHHHHHHHHhcCccc
Q 004925 49 IRG-GILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 49 ~~g-~iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
+.+ .|+.-..|+|||.+|..++..+...
T Consensus 36 i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 36 INHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 344 4789999999999999888877653
No 264
>PRK14974 cell division protein FtsY; Provisional
Probab=89.47 E-value=0.86 Score=47.72 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=17.9
Q ss_pred CcccCCCCCcHHHHHHHHHhcCc
Q 004925 52 GILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~ 74 (723)
.++...+|+|||.++..++..+.
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 46678999999998877776544
No 265
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=89.22 E-value=0.47 Score=45.62 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=23.7
Q ss_pred CCCCCCcccCCCCCcHHHHHHHHHhcCc
Q 004925 47 SAIRGGILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 47 ~~~~g~iLad~~GlGKT~~al~~i~~~~ 74 (723)
+.+.+.|++.++|+|||..++.++..++
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 4568889999999999999988887654
No 266
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=89.13 E-value=0.46 Score=51.00 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=21.9
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCccc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
+..|+..+.|+|||..|..++..+...
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 445789999999999999988776543
No 267
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=89.12 E-value=0.76 Score=48.62 Aligned_cols=43 Identities=16% Similarity=0.147 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhccCC-C-CCCcccCCCCCcHHHHHHHHHhcCccc
Q 004925 34 QKEWLAWALKQEESA-I-RGGILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 34 Q~~~~~~~~~~~~~~-~-~g~iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
|.++...+......+ . ...|+..+.|+|||..|..++..+...
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 334445545444332 1 246789999999999999888877653
No 268
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.11 E-value=1.7 Score=46.38 Aligned_cols=42 Identities=24% Similarity=0.152 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhccC-CCCCC-cccCCCCCcHHHHHHHHHhcCc
Q 004925 33 YQKEWLAWALKQEES-AIRGG-ILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 33 ~Q~~~~~~~~~~~~~-~~~g~-iLad~~GlGKT~~al~~i~~~~ 74 (723)
.|.+.+..+.+.... ...++ |+..+.|+|||..|..++....
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 455555554443332 23444 7999999999999988887664
No 269
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=89.10 E-value=1.3 Score=45.96 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=38.4
Q ss_pred ccCChHHHHHHHHHHHHhcc-CCCCC-CcccCCCCCcHHHHHHHHHhcCccc
Q 004925 27 ITPLLRYQKEWLAWALKQEE-SAIRG-GILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 27 ~~~L~p~Q~~~~~~~~~~~~-~~~~g-~iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
...++|+|......+.+... +...+ .++..+.|+||+..|..++..++-.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~ 53 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLAS 53 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCC
Confidence 34789999998888776643 23344 5678999999999999998877654
No 270
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.96 E-value=4.5 Score=43.78 Aligned_cols=25 Identities=28% Similarity=0.197 Sum_probs=21.1
Q ss_pred CcccCCCCCcHHHHHHHHHhcCccc
Q 004925 52 GILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
.|+..+.|+|||..|..++..+...
T Consensus 41 ~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 41 YIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Confidence 5789999999999999888877653
No 271
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=88.84 E-value=2.4 Score=48.26 Aligned_cols=44 Identities=23% Similarity=0.086 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhccC-C-CCCCcccCCCCCcHHHHHHHHHhcCccc
Q 004925 33 YQKEWLAWALKQEES-A-IRGGILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 33 ~Q~~~~~~~~~~~~~-~-~~g~iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
.|-..+..+.+.... . ....|+..+.|+|||.+|..++..+...
T Consensus 28 Gq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 28 GQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 344444444443322 2 2356889999999999999888877654
No 272
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=88.83 E-value=2.8 Score=42.68 Aligned_cols=43 Identities=23% Similarity=0.215 Sum_probs=26.7
Q ss_pred ccceeeEEEEeeccccc-cCCCcHHHH---HHHhhhc--CceEEEeCcC
Q 004925 239 LHSLKWERIILDEAHFI-KDRRSNTAK---AVLALES--SYKWALSGTP 281 (723)
Q Consensus 239 l~~~~~~~vIiDEaH~~-kn~~s~~~~---~l~~l~~--~~~l~LTaTP 281 (723)
+...+..++||||.|++ .+...+... .++.+.. ..-+.+.||+
T Consensus 141 lr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 44556799999999996 444444444 3444432 3336677886
No 273
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.79 E-value=1.8 Score=47.70 Aligned_cols=24 Identities=33% Similarity=0.224 Sum_probs=20.0
Q ss_pred CcccCCCCCcHHHHHHHHHhcCcc
Q 004925 52 GILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
.|+..++|+|||..|-.++.....
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 588999999999999888776543
No 274
>PRK08116 hypothetical protein; Validated
Probab=88.73 E-value=1.4 Score=44.85 Aligned_cols=26 Identities=31% Similarity=0.289 Sum_probs=21.8
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCcc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
.|.+|.-++|+|||..|.+++..+..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~ 140 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIE 140 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45889999999999999888877654
No 275
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=88.64 E-value=2.9 Score=43.69 Aligned_cols=24 Identities=33% Similarity=0.315 Sum_probs=19.9
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcC
Q 004925 50 RGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
++.+|..+.|+|||..+-.++...
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 457999999999999987776654
No 276
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=88.60 E-value=2.2 Score=50.08 Aligned_cols=58 Identities=14% Similarity=-0.018 Sum_probs=41.9
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhh
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 107 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l 107 (723)
..|-+-|+.++..++.. . +-.+|....|+|||.++-+++......+ ..+++++|...
T Consensus 351 ~~Ls~~Q~~Av~~i~~s---~-~~~il~G~aGTGKTtll~~i~~~~~~~g-------------------~~V~~~ApTg~ 407 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGS---G-DIAVVVGRAGTGKSTMLKAAREAWEAAG-------------------YRVIGAALSGK 407 (744)
T ss_pred CCCCHHHHHHHHHHhcC---C-CEEEEEecCCCCHHHHHHHHHHHHHhCC-------------------CeEEEEeCcHH
Confidence 46889999999887642 1 3468889999999988766655433321 47788899765
Q ss_pred H
Q 004925 108 V 108 (723)
Q Consensus 108 ~ 108 (723)
.
T Consensus 408 A 408 (744)
T TIGR02768 408 A 408 (744)
T ss_pred H
Confidence 4
No 277
>PRK06835 DNA replication protein DnaC; Validated
Probab=88.52 E-value=4.3 Score=42.53 Aligned_cols=47 Identities=11% Similarity=0.063 Sum_probs=31.6
Q ss_pred CChHHHHHHHHHHH---HhccCCCCCCcccCCCCCcHHHHHHHHHhcCcc
Q 004925 29 PLLRYQKEWLAWAL---KQEESAIRGGILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~---~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
..+.++..++..+. ........+.+|..++|+|||..+.+++..+..
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~ 209 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLD 209 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 45556655555333 222223378889999999999999888876654
No 278
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=88.26 E-value=1.5 Score=46.38 Aligned_cols=26 Identities=23% Similarity=0.114 Sum_probs=21.8
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCcc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
++.++..+.|+|||.++.+++.....
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 36789999999999999888876653
No 279
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=87.90 E-value=5.3 Score=45.74 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=20.8
Q ss_pred CCcccCCCCCcHHHHHHHHHhcCcc
Q 004925 51 GGILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 51 g~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
..|+..+.|+|||.+|..++..+..
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4488999999999999888876554
No 280
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=87.67 E-value=2.1 Score=47.00 Aligned_cols=25 Identities=36% Similarity=0.157 Sum_probs=20.0
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~ 74 (723)
.+.+|..++|+|||..+-++.....
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~ 166 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALR 166 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4578889999999998877776554
No 281
>PRK05642 DNA replication initiation factor; Validated
Probab=87.64 E-value=1.8 Score=43.00 Aligned_cols=23 Identities=22% Similarity=0.083 Sum_probs=17.6
Q ss_pred CCCcccCCCCCcHHHHHHHHHhc
Q 004925 50 RGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~ 72 (723)
+..+|..+.|+|||..+-++...
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~ 68 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLR 68 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999886665543
No 282
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=87.12 E-value=1.5 Score=44.20 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=48.2
Q ss_pred CcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hhhH-----HHHHHHHHhh-c-CCCC
Q 004925 52 GILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAAV-----TQWVSEINRF-T-SVGS 123 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~l~-----~qW~~ei~~~-~-~~~~ 123 (723)
+++-.++|+||+.--=.++...+-... ...+++|+| +..+ .-|..++.+- + ....
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~~lI~P~-----------------PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~ 152 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISCQLIQPP-----------------PETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPD 152 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhcCcccCC-----------------CCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCC
Confidence 466789999999765555554433222 268899999 4443 6688777552 1 1111
Q ss_pred cEEEEEeCCCCCCCccccCCCCEEEechhhhHHhhh
Q 004925 124 TKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYR 159 (723)
Q Consensus 124 ~~~~~~~g~~~~~~~~~~~~~~ivi~t~~~l~~~~~ 159 (723)
-.++...|+. ..++|-++|+.+....+
T Consensus 153 gTi~P~t~t~---------~P~Fv~msy~e~t~~~N 179 (369)
T PF02456_consen 153 GTIVPQTGTF---------RPKFVEMSYDEATSPEN 179 (369)
T ss_pred Ceeccccccc---------cccceeecHhhhCCccc
Confidence 2233333333 23678888888766544
No 283
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=86.84 E-value=3.5 Score=48.08 Aligned_cols=95 Identities=11% Similarity=0.102 Sum_probs=70.3
Q ss_pred CcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHH----HHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceE
Q 004925 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLD----LINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKI 624 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~----~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~v 624 (723)
.+|+|.....-.+...+ ..+.+++|.++....+. .+.+++...|+++..++|+++..+|...+....++ .+.|
T Consensus 291 TGSGKT~va~~~il~~~--~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g-~~~I 367 (681)
T PRK10917 291 VGSGKTVVAALAALAAI--EAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASG-EADI 367 (681)
T ss_pred CCCcHHHHHHHHHHHHH--HcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCC-CCCE
Confidence 56788876655554443 24678999999886655 44555555689999999999999999999988765 6788
Q ss_pred EEEecCCCcccccccccCEEEE
Q 004925 625 FLMSLKAGGVALNLTVASHVFL 646 (723)
Q Consensus 625 ll~s~~~~~eGlnL~~a~~vI~ 646 (723)
+|.+.......+.+.....||+
T Consensus 368 vVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 368 VIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred EEchHHHhcccchhcccceEEE
Confidence 8877666666777776666655
No 284
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.51 E-value=1.5 Score=49.26 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=21.2
Q ss_pred CCC-cccCCCCCcHHHHHHHHHhcCcc
Q 004925 50 RGG-ILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 50 ~g~-iLad~~GlGKT~~al~~i~~~~~ 75 (723)
.++ |+..+.|+|||.+|..++..+..
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 38 HHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444 78999999999999888877654
No 285
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.49 E-value=1.2 Score=47.63 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=39.1
Q ss_pred CCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhhHHHHHHHHHhhc
Q 004925 47 SAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFT 119 (723)
Q Consensus 47 ~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~~qW~~ei~~~~ 119 (723)
..++|.+|+-+.|.|||+.+-+++..... ...-|-|.+|...|..|..+..
T Consensus 184 ~p~rglLLfGPpgtGKtmL~~aiAsE~~a----------------------tff~iSassLtsK~~Ge~eK~v 234 (428)
T KOG0740|consen 184 EPVRGLLLFGPPGTGKTMLAKAIATESGA----------------------TFFNISASSLTSKYVGESEKLV 234 (428)
T ss_pred cccchhheecCCCCchHHHHHHHHhhhcc----------------------eEeeccHHHhhhhccChHHHHH
Confidence 34678899999999999999888775422 4455667899999998886553
No 286
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=86.30 E-value=4.1 Score=43.34 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=18.9
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~ 74 (723)
+-.+|...+|+|||.++..++..+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3446778899999999877776543
No 287
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=86.11 E-value=1.6 Score=44.61 Aligned_cols=137 Identities=15% Similarity=0.108 Sum_probs=86.7
Q ss_pred ccccccccccc-cCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcccccccccCCCCCCccccccCCc---ccc
Q 004925 463 EHVQQVCGLCN-DLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFK---SSS 538 (723)
Q Consensus 463 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 538 (723)
+..+-.|+-|+ .....-..++|+-.+|.+|+.-...++ |...+............-...+++.... +..
T Consensus 36 ~~gk~~C~RC~~~~~~~~~~lp~~~~YCr~Cl~mgRv~s-------d~~Ly~~~~~~fp~~s~L~W~G~Ls~~Q~~as~~ 108 (441)
T COG4098 36 ENGKYRCNRCGNTHIELFAKLPCGCLYCRNCLMMGRVRS-------DQKLYYWKPYAFPKKSVLQWKGTLSPGQKKASNQ 108 (441)
T ss_pred ccCcEEehhcCCcchhhhcccccceEeehhhhhcccccc-------cceeeecCCcCCCccceeeeccccChhHHHHHHH
Confidence 44556788888 556667899999999999996444333 2222222211111111111122222111 111
Q ss_pred chhhc------cccccCcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhC--CCeEEEeecCCCHHH
Q 004925 539 ILNRI------QLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS--GVNCVQLVGSMSIPA 608 (723)
Q Consensus 539 ~~~~~------~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~--g~~~~~i~g~~~~~~ 608 (723)
..+.+ -.+.+.+++|.+.+-+-++..+. .|.+|.|-+...++.-.|+..|++. +..+..++|+.++.-
T Consensus 109 l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~--~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~f 184 (441)
T COG4098 109 LVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN--QGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSYF 184 (441)
T ss_pred HHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh--cCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchhc
Confidence 22211 33456789999999999998864 6689999999999999999999886 688888888866443
No 288
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=86.04 E-value=1.4 Score=42.36 Aligned_cols=57 Identities=18% Similarity=0.164 Sum_probs=31.9
Q ss_pred eeEEEEeeccccccCCCcH---HHHHHHhhh-cCceEEEeCcCCCCchhhHHHHHHHhccC
Q 004925 243 KWERIILDEAHFIKDRRSN---TAKAVLALE-SSYKWALSGTPLQNRVGELYSLVRFLQIT 299 (723)
Q Consensus 243 ~~~~vIiDEaH~~kn~~s~---~~~~l~~l~-~~~~l~LTaTP~~n~~~dl~~~l~lL~~~ 299 (723)
++|+|+||-+-+..+.... ..+.+..+. ....+.|+||--......+......+++.
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~ 143 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGID 143 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTC
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCc
Confidence 3689999998766433221 122222223 34456699987666666666666655433
No 289
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=85.97 E-value=4.9 Score=41.96 Aligned_cols=23 Identities=35% Similarity=0.304 Sum_probs=18.0
Q ss_pred CCCcc-cCCCCCcHHHHHHHHHhc
Q 004925 50 RGGIL-ADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 50 ~g~iL-ad~~GlGKT~~al~~i~~ 72 (723)
.+.+| ..+.|+|||..+-+++..
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHH
Confidence 45555 899999999988777654
No 290
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=85.79 E-value=3.7 Score=43.83 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=18.5
Q ss_pred CcccCCCCCcHHHHHHHHHhcCc
Q 004925 52 GILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~ 74 (723)
.+|.-++|+|||..++.++....
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a 107 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLA 107 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 36788999999999887776544
No 291
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=85.79 E-value=1.9 Score=45.28 Aligned_cols=48 Identities=17% Similarity=0.030 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCcccc
Q 004925 30 LLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIR 77 (723)
Q Consensus 30 L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~ 77 (723)
++|+|...-..+.....+-.+..++..+.|+|||..|..++..+....
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 578888887777765444434445789999999999999988877644
No 292
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.77 E-value=3.7 Score=46.81 Aligned_cols=44 Identities=18% Similarity=0.034 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhccC-CCCC-CcccCCCCCcHHHHHHHHHhcCccc
Q 004925 33 YQKEWLAWALKQEES-AIRG-GILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 33 ~Q~~~~~~~~~~~~~-~~~g-~iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
.|...+..+.+.... ...+ -|+..+.|+|||.+|..++..+...
T Consensus 20 GQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 20 AQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred CcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 355555555543332 3334 5689999999999999888776553
No 293
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=85.72 E-value=1.4 Score=41.84 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=34.2
Q ss_pred eeeEEEEeeccccccCCC----cHHHHHHHhhhcCceEEEeCcCCCCchhhHHHHHHHhc
Q 004925 242 LKWERIILDEAHFIKDRR----SNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQ 297 (723)
Q Consensus 242 ~~~~~vIiDEaH~~kn~~----s~~~~~l~~l~~~~~l~LTaTP~~n~~~dl~~~l~lL~ 297 (723)
-.|++||+||.-.+-+.. ......+..-+..--++|||--.+..+-++.+++.-+.
T Consensus 114 ~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlVTEm~ 173 (191)
T PRK05986 114 ESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLVTEMR 173 (191)
T ss_pred CCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchheecc
Confidence 368999999998876644 22333333323445799999765555555555544443
No 294
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.68 E-value=6.6 Score=44.55 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=21.6
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCcc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
...|+..+.|+|||.+|..++..+..
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhccc
Confidence 44567999999999999988887764
No 295
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.57 E-value=5.8 Score=45.46 Aligned_cols=44 Identities=18% Similarity=0.024 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhccCC--CCCCcccCCCCCcHHHHHHHHHhcCccc
Q 004925 33 YQKEWLAWALKQEESA--IRGGILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 33 ~Q~~~~~~~~~~~~~~--~~g~iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
.|...+..+.+....+ ....|+..+.|+|||.+|..++..+...
T Consensus 20 Gq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 20 GQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 3444444444333322 1445789999999999999988877643
No 296
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=85.52 E-value=5.8 Score=44.31 Aligned_cols=26 Identities=23% Similarity=0.134 Sum_probs=21.3
Q ss_pred CCC-cccCCCCCcHHHHHHHHHhcCcc
Q 004925 50 RGG-ILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 50 ~g~-iLad~~GlGKT~~al~~i~~~~~ 75 (723)
.+. |+..+.|+|||..|..++..+..
T Consensus 36 ~hayLf~Gp~G~GKTt~Ar~LAk~L~c 62 (535)
T PRK08451 36 AHAYLFSGLRGSGKTSSARIFARALVC 62 (535)
T ss_pred CeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence 444 78999999999999888877654
No 297
>PRK04195 replication factor C large subunit; Provisional
Probab=85.18 E-value=6.2 Score=43.99 Aligned_cols=25 Identities=32% Similarity=0.227 Sum_probs=20.8
Q ss_pred CCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 49 IRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 49 ~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
.+..||..++|+|||..|-+++..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3778999999999999987776643
No 298
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.10 E-value=3.5 Score=46.93 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcc-CCCCCC-cccCCCCCcHHHHHHHHHhcCcc
Q 004925 34 QKEWLAWALKQEE-SAIRGG-ILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 34 Q~~~~~~~~~~~~-~~~~g~-iLad~~GlGKT~~al~~i~~~~~ 75 (723)
|...+..+.+... +...+. |+....|+|||.+|..++..+..
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5555555444332 223344 78999999999999988877664
No 299
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.90 E-value=5 Score=44.76 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcc-CCCCCC-cccCCCCCcHHHHHHHHHhcCcc
Q 004925 34 QKEWLAWALKQEE-SAIRGG-ILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 34 Q~~~~~~~~~~~~-~~~~g~-iLad~~GlGKT~~al~~i~~~~~ 75 (723)
|...+..+.+... +...+. |+.-+.|+|||..|.+++..+..
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4445554443332 223444 88999999999999888877653
No 300
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=84.86 E-value=2.9 Score=45.90 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=46.8
Q ss_pred CCCccCChHHHHHHHHHHHHhccC-----CCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCc
Q 004925 24 PDLITPLLRYQKEWLAWALKQEES-----AIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKA 98 (723)
Q Consensus 24 ~~~~~~L~p~Q~~~~~~~~~~~~~-----~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (723)
++....|.|||...+.-++-.... ..+-+++..+=|=|||..+.+++....-.....+ ..
T Consensus 56 ~~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~---------------~~ 120 (546)
T COG4626 56 PGFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSG---------------AG 120 (546)
T ss_pred CCCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcC---------------Cc
Confidence 777889999999999988743332 2344588889999999987666554332222221 57
Q ss_pred eEEEech
Q 004925 99 TLVICPV 105 (723)
Q Consensus 99 ~LIv~P~ 105 (723)
+.|++|.
T Consensus 121 ~~i~A~s 127 (546)
T COG4626 121 IYILAPS 127 (546)
T ss_pred EEEEecc
Confidence 8888885
No 301
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=84.83 E-value=1.9 Score=33.98 Aligned_cols=48 Identities=21% Similarity=0.375 Sum_probs=36.7
Q ss_pred cccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCccc
Q 004925 466 QQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 514 (723)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (723)
...|+++..+-.+|+++++|+.|+.+|+..-... ....||.++.++..
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~-~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTYERSAIERWLEQ-NGGTDPFTRQPLSE 51 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCT-TSSB-TTT-SB-SG
T ss_pred ccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHc-CCCCCCCCCCcCCc
Confidence 3579999999999999999999999999777776 67788888777663
No 302
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.72 E-value=7.9 Score=44.12 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhc-cCCCCCC-cccCCCCCcHHHHHHHHHhcCccc
Q 004925 34 QKEWLAWALKQE-ESAIRGG-ILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 34 Q~~~~~~~~~~~-~~~~~g~-iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
|.+.+..+.+.. .+...++ |+..+.|+|||.+|..++..+...
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 21 QEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 344444433332 2233444 789999999999999888876543
No 303
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=84.70 E-value=0.49 Score=46.29 Aligned_cols=44 Identities=30% Similarity=0.731 Sum_probs=38.5
Q ss_pred cccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcc
Q 004925 468 VCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 513 (723)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (723)
-|-+|.....-|..+.|||.||.=|+.....+ -..||.|+.+.-
T Consensus 27 rC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~--qp~CP~Cr~~~~ 70 (391)
T COG5432 27 RCRICDCRISIPCETTCGHTFCSLCIRRHLGT--QPFCPVCREDPC 70 (391)
T ss_pred HhhhhhheeecceecccccchhHHHHHHHhcC--CCCCccccccHH
Confidence 49999999999999999999999999887765 467999987754
No 304
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=84.68 E-value=3.2 Score=44.23 Aligned_cols=45 Identities=13% Similarity=0.042 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcc-CCCC-CCcccCCCCCcHHHHHHHHHhcCcccc
Q 004925 33 YQKEWLAWALKQEE-SAIR-GGILADEMGMGKTIQAIALVLAKREIR 77 (723)
Q Consensus 33 ~Q~~~~~~~~~~~~-~~~~-g~iLad~~GlGKT~~al~~i~~~~~~~ 77 (723)
.|..+...+.+... +... .-|+..+.|+||+..|..++..++...
T Consensus 23 Gq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 23 GHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 34455554444333 2233 357899999999999999999887644
No 305
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=84.54 E-value=1.8 Score=48.67 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=22.0
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCccc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
+.-|+..+.|+|||..|..++..+...
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 345789999999999999888876543
No 306
>PRK11054 helD DNA helicase IV; Provisional
Probab=84.29 E-value=1.6 Score=50.64 Aligned_cols=87 Identities=15% Similarity=0.058 Sum_probs=58.9
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhh
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 107 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l 107 (723)
.+|-|-|++++..- . ++.++....|+|||.++++.+.++....... ...+|+++...-
T Consensus 195 ~~L~~~Q~~av~~~--~-----~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~---------------~~~IL~ltft~~ 252 (684)
T PRK11054 195 SPLNPSQARAVVNG--E-----DSLLVLAGAGSGKTSVLVARAGWLLARGQAQ---------------PEQILLLAFGRQ 252 (684)
T ss_pred CCCCHHHHHHHhCC--C-----CCeEEEEeCCCCHHHHHHHHHHHHHHhCCCC---------------HHHeEEEeccHH
Confidence 47888999888632 1 4456667799999999998887766543221 158899999776
Q ss_pred HHHHHHH-HHhhcCCCCcEEEEEeCCCCCCCccccCCCCEEEechhhhHHhh
Q 004925 108 VTQWVSE-INRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADY 158 (723)
Q Consensus 108 ~~qW~~e-i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ivi~t~~~l~~~~ 158 (723)
..+...+ |...++ ...+.+.|+..+...+
T Consensus 253 AA~em~eRL~~~lg----------------------~~~v~v~TFHSlal~I 282 (684)
T PRK11054 253 AAEEMDERIRERLG----------------------TEDITARTFHALALHI 282 (684)
T ss_pred HHHHHHHHHHHhcC----------------------CCCcEEEeHHHHHHHH
Confidence 6555555 555443 1256678888776554
No 307
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=84.24 E-value=1.8 Score=47.67 Aligned_cols=72 Identities=21% Similarity=0.172 Sum_probs=48.3
Q ss_pred CcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhhHHHHHHHHHhhcCCCCcEEEEEeC
Q 004925 52 GILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHG 131 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~~qW~~ei~~~~~~~~~~~~~~~g 131 (723)
.++-...|+|||.+|+.-+++++..+... ...+++||+.|+.++......+ +|
T Consensus 229 lVVQGaAGSGKTtiALHRvAyLlY~~R~~-------------l~~k~vlvl~PN~vFleYis~V---LP----------- 281 (747)
T COG3973 229 LVVQGAAGSGKTTIALHRVAYLLYGYRGP-------------LQAKPVLVLGPNRVFLEYISRV---LP----------- 281 (747)
T ss_pred EEEecCCCCCchhHHHHHHHHHHhccccc-------------cccCceEEEcCcHHHHHHHHHh---ch-----------
Confidence 35678899999999987777665443211 1126799999999876655443 43
Q ss_pred CCCCCCccccCCCCEEEechhhhHHhh
Q 004925 132 SNRERSAKQFSEFDFVITTYSIIEADY 158 (723)
Q Consensus 132 ~~~~~~~~~~~~~~ivi~t~~~l~~~~ 158 (723)
.++...++..|++.+....
T Consensus 282 --------eLGe~~V~q~Tf~e~a~~i 300 (747)
T COG3973 282 --------ELGEEGVVQETFEEWALAI 300 (747)
T ss_pred --------hhccCceeeccHHHHHHHh
Confidence 2345567788887765543
No 308
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=84.17 E-value=2.2 Score=45.56 Aligned_cols=23 Identities=22% Similarity=0.007 Sum_probs=19.0
Q ss_pred CCCcccCCCCCcHHHHHHHHHhc
Q 004925 50 RGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~ 72 (723)
.+.|+..+.|+|||..+.++...
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHH
Confidence 78889999999999888765544
No 309
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.16 E-value=5.1 Score=45.79 Aligned_cols=42 Identities=19% Similarity=0.127 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhccC-CCCCC-cccCCCCCcHHHHHHHHHhcCc
Q 004925 33 YQKEWLAWALKQEES-AIRGG-ILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 33 ~Q~~~~~~~~~~~~~-~~~g~-iLad~~GlGKT~~al~~i~~~~ 74 (723)
.|...+..+...... ...+. |+..+.|+|||.++..++..+.
T Consensus 20 Gq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 20 GQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 355555555443332 22333 7899999999999988887664
No 310
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=83.99 E-value=8.9 Score=40.04 Aligned_cols=48 Identities=10% Similarity=-0.008 Sum_probs=35.2
Q ss_pred ChHHHHHHHHHHHHhccC-CCCCC-cccCCCCCcHHHHHHHHHhcCcccc
Q 004925 30 LLRYQKEWLAWALKQEES-AIRGG-ILADEMGMGKTIQAIALVLAKREIR 77 (723)
Q Consensus 30 L~p~Q~~~~~~~~~~~~~-~~~g~-iLad~~GlGKT~~al~~i~~~~~~~ 77 (723)
++|+|...-..+.+.... ...++ |+..+.|+||+..|..++..+....
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 578888777776665543 33344 5789999999999999988877643
No 311
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=83.79 E-value=1.2 Score=46.28 Aligned_cols=68 Identities=16% Similarity=0.093 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechh-hH
Q 004925 30 LLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVA-AV 108 (723)
Q Consensus 30 L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~-l~ 108 (723)
|-+-|..++.+ .. +..++-...|+|||.+++..+..++..... +...+|++++.. ..
T Consensus 1 l~~eQ~~~i~~-~~------~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~---------------~~~~Il~lTft~~aa 58 (315)
T PF00580_consen 1 LTDEQRRIIRS-TE------GPLLVNAGAGSGKTTTLLERIAYLLYEGGV---------------PPERILVLTFTNAAA 58 (315)
T ss_dssp S-HHHHHHHHS--S------SEEEEEE-TTSSHHHHHHHHHHHHHHTSSS---------------TGGGEEEEESSHHHH
T ss_pred CCHHHHHHHhC-CC------CCEEEEeCCCCCchHHHHHHHHHhhccccC---------------ChHHheecccCHHHH
Confidence 44678887776 22 556777789999999998877766554421 126799999854 44
Q ss_pred HHHHHHHHhhc
Q 004925 109 TQWVSEINRFT 119 (723)
Q Consensus 109 ~qW~~ei~~~~ 119 (723)
..-+.-+...+
T Consensus 59 ~e~~~ri~~~l 69 (315)
T PF00580_consen 59 QEMRERIRELL 69 (315)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 44445554443
No 312
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=83.76 E-value=6.3 Score=36.02 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=18.0
Q ss_pred cccCCCCCcHHHHHHHHHhcCcc
Q 004925 53 ILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 53 iLad~~GlGKT~~al~~i~~~~~ 75 (723)
+|.-++|+|||..+..++.....
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHh
Confidence 56778999999999877765543
No 313
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=83.69 E-value=4.7 Score=45.61 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=20.7
Q ss_pred CcccCCCCCcHHHHHHHHHhcCcc
Q 004925 52 GILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
.|+..+.|+|||.+|..++..+..
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhcc
Confidence 578999999999999888887654
No 314
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=83.68 E-value=0.4 Score=48.07 Aligned_cols=44 Identities=34% Similarity=0.928 Sum_probs=39.1
Q ss_pred cccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcc
Q 004925 468 VCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 513 (723)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (723)
-|.+|.++..-|++++|+|.||.=|+.+.... .+-||.|...+.
T Consensus 25 RC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~--~p~CP~C~~~~~ 68 (442)
T KOG0287|consen 25 RCGICFEYFNIPMITPCSHTFCSLCIRKFLSY--KPQCPTCCVTVT 68 (442)
T ss_pred HHhHHHHHhcCceeccccchHHHHHHHHHhcc--CCCCCceecccc
Confidence 49999999999999999999999999877654 578999998876
No 315
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=83.61 E-value=2.8 Score=42.18 Aligned_cols=65 Identities=23% Similarity=0.146 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhhHHHHH
Q 004925 33 YQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWV 112 (723)
Q Consensus 33 ~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~~qW~ 112 (723)
.++..+........++ .|.++--++|+|||..|+|+..... ..+ ..++++.-+-++.+++
T Consensus 90 ~~l~~~~~~~~~~~~~-~nl~l~G~~G~GKThLa~Ai~~~l~-~~g------------------~sv~f~~~~el~~~Lk 149 (254)
T COG1484 90 KALEDLASLVEFFERG-ENLVLLGPPGVGKTHLAIAIGNELL-KAG------------------ISVLFITAPDLLSKLK 149 (254)
T ss_pred HHHHHHHHHHHHhccC-CcEEEECCCCCcHHHHHHHHHHHHH-HcC------------------CeEEEEEHHHHHHHHH
Confidence 3344443333333344 8889999999999999988887766 322 3556555577777777
Q ss_pred HHHHh
Q 004925 113 SEINR 117 (723)
Q Consensus 113 ~ei~~ 117 (723)
..+..
T Consensus 150 ~~~~~ 154 (254)
T COG1484 150 AAFDE 154 (254)
T ss_pred HHHhc
Confidence 77754
No 316
>PRK09183 transposase/IS protein; Provisional
Probab=83.38 E-value=4.4 Score=40.92 Aligned_cols=23 Identities=39% Similarity=0.387 Sum_probs=19.0
Q ss_pred CCCcccCCCCCcHHHHHHHHHhc
Q 004925 50 RGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~ 72 (723)
.+.+|..++|+|||..+.++...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 66788889999999998877544
No 317
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=83.34 E-value=0.32 Score=33.95 Aligned_cols=39 Identities=28% Similarity=0.787 Sum_probs=28.8
Q ss_pred ccccccCC---CCCcccccCCccchhhhhhhhcCcCCCCCCCCC
Q 004925 469 CGLCNDLA---DDPVVTNCGHAFCKACLFDSSASKFVAKCPTCS 509 (723)
Q Consensus 469 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (723)
|.+|.+.. +....++|+|.|+.+|+..-.... ..||.|+
T Consensus 3 C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~--~~CP~CR 44 (44)
T PF13639_consen 3 CPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN--NSCPVCR 44 (44)
T ss_dssp ETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS--SB-TTTH
T ss_pred CcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC--CcCCccC
Confidence 55666443 456788999999999999888774 4888874
No 318
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.24 E-value=0.82 Score=45.43 Aligned_cols=58 Identities=22% Similarity=0.515 Sum_probs=48.0
Q ss_pred ccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcccccccccCCC
Q 004925 465 VQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAG 523 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (723)
...+|.+|+.....|+.+.|.|.||.-|++..... ....|++|+.++...+..+....
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~n-dk~~CavCR~pids~i~~~psl~ 63 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKN-DKKTCAVCRFPIDSTIDFEPSLK 63 (324)
T ss_pred cCCcceeeeccCCcCccccccchhhhhhhcchhhc-CCCCCceecCCCCcchhcchhhh
Confidence 45789999999999999999999999999765554 45569999999998877665444
No 319
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=82.77 E-value=3.1 Score=38.64 Aligned_cols=45 Identities=18% Similarity=0.133 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcc-CCCCCC-cccCCCCCcHHHHHHHHHhcCccccC
Q 004925 34 QKEWLAWALKQEE-SAIRGG-ILADEMGMGKTIQAIALVLAKREIRG 78 (723)
Q Consensus 34 Q~~~~~~~~~~~~-~~~~g~-iLad~~GlGKT~~al~~i~~~~~~~~ 78 (723)
|...+..+.+... +...++ |+..+.|+||+..|..++........
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~ 48 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNP 48 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence 4455555554433 333454 78888999999999999988776554
No 320
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=82.73 E-value=3.3 Score=41.53 Aligned_cols=48 Identities=25% Similarity=0.399 Sum_probs=36.6
Q ss_pred CCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hhhHHHHHHHHHhhc
Q 004925 49 IRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAAVTQWVSEINRFT 119 (723)
Q Consensus 49 ~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~l~~qW~~ei~~~~ 119 (723)
-+|.+|..++|+||++.|=+++-.. ..+.+-+. .-|+..|.-|=.+..
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEA-----------------------nSTFFSvSSSDLvSKWmGESEkLV 214 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEA-----------------------NSTFFSVSSSDLVSKWMGESEKLV 214 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhc-----------------------CCceEEeehHHHHHHHhccHHHHH
Confidence 4788999999999999987776533 34455555 668999999877664
No 321
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=82.52 E-value=17 Score=41.10 Aligned_cols=89 Identities=12% Similarity=0.170 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcccH----hHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEec
Q 004925 554 IEALREEIRFMVERDGSAKGIVFSQFT----SFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 629 (723)
Q Consensus 554 l~~l~~~l~~~~~~~~~~KvIIF~~~~----~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~ 629 (723)
+-+++..+..+ ..|.++.+-+... +.+..+.++|...|+.+...+|+++..+|.+++.+-.++ ...++|-+=
T Consensus 298 vVA~laml~ai---~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G-~~~ivVGTH 373 (677)
T COG1200 298 VVALLAMLAAI---EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASG-EIDIVVGTH 373 (677)
T ss_pred HHHHHHHHHHH---HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCC-CCCEEEEcc
Confidence 34444444443 3456777666643 567788999999999999999999999999999999876 788777666
Q ss_pred CCCcccccccccCEEEE
Q 004925 630 KAGGVALNLTVASHVFL 646 (723)
Q Consensus 630 ~~~~eGlnL~~a~~vI~ 646 (723)
...-+.++++..-.||+
T Consensus 374 ALiQd~V~F~~LgLVIi 390 (677)
T COG1200 374 ALIQDKVEFHNLGLVII 390 (677)
T ss_pred hhhhcceeecceeEEEE
Confidence 66667788777666665
No 322
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=82.44 E-value=8.7 Score=43.56 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=19.5
Q ss_pred CcccCCCCCcHHHHHHHHHhcCcc
Q 004925 52 GILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
.|+..+.|+|||.+|-.++.....
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal~c 64 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAVNC 64 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Confidence 467999999999999887766544
No 323
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=82.41 E-value=5.1 Score=48.15 Aligned_cols=59 Identities=17% Similarity=0.017 Sum_probs=39.3
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhh
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 107 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l 107 (723)
..|-+-|++++..++... .-++|--..|+|||.+.-++....... . ..++.++|...
T Consensus 345 ~~Ls~eQr~Av~~il~s~----~v~vv~G~AGTGKTT~l~~~~~~~e~~-G------------------~~V~~~ApTGk 401 (988)
T PRK13889 345 LVLSGEQADALAHVTDGR----DLGVVVGYAGTGKSAMLGVAREAWEAA-G------------------YEVRGAALSGI 401 (988)
T ss_pred CCCCHHHHHHHHHHhcCC----CeEEEEeCCCCCHHHHHHHHHHHHHHc-C------------------CeEEEecCcHH
Confidence 368999999998876421 235788899999998754433332211 1 46788888765
Q ss_pred HH
Q 004925 108 VT 109 (723)
Q Consensus 108 ~~ 109 (723)
..
T Consensus 402 AA 403 (988)
T PRK13889 402 AA 403 (988)
T ss_pred HH
Confidence 43
No 324
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=82.22 E-value=0.65 Score=43.79 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=12.8
Q ss_pred cCCCCEEEechhhhHHh
Q 004925 141 FSEFDFVITTYSIIEAD 157 (723)
Q Consensus 141 ~~~~~ivi~t~~~l~~~ 157 (723)
...++|||++|.-+-+.
T Consensus 117 ~~~adivi~~y~yl~~~ 133 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDP 133 (174)
T ss_dssp GGG-SEEEEETHHHHSH
T ss_pred cccCCEEEeCHHHHhhH
Confidence 45689999999988654
No 325
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=82.18 E-value=1.1 Score=46.94 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=18.9
Q ss_pred CCCCCCcccCCCCCcHHHHHHHHH
Q 004925 47 SAIRGGILADEMGMGKTIQAIALV 70 (723)
Q Consensus 47 ~~~~g~iLad~~GlGKT~~al~~i 70 (723)
+...+-||..++|+|||..|-.+.
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA 69 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIA 69 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHH
Confidence 455777999999999999884443
No 326
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=82.13 E-value=9.8 Score=33.35 Aligned_cols=21 Identities=38% Similarity=0.317 Sum_probs=17.2
Q ss_pred cccCCCCCcHHHHHHHHHhcC
Q 004925 53 ILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 53 iLad~~GlGKT~~al~~i~~~ 73 (723)
+|--++|+|||..+-.++...
T Consensus 2 ll~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT
T ss_pred EEECcCCCCeeHHHHHHHhhc
Confidence 566789999999997777765
No 327
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.12 E-value=10 Score=42.45 Aligned_cols=97 Identities=10% Similarity=0.083 Sum_probs=70.8
Q ss_pred cCcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhC-CCeEEEeecCCCHHHHHHHHHhhcCCCCceEEE
Q 004925 548 FQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS-GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFL 626 (723)
Q Consensus 548 ~~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~-g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll 626 (723)
..+|+|....+..+...++ .+.++||.+........+.+.|++. |..+..++|+++..+|.....+-..+ ...|+|
T Consensus 5 ~TGsGKT~v~l~~i~~~l~--~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g-~~~IVV 81 (505)
T TIGR00595 5 VTGSGKTEVYLQAIEKVLA--LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNG-EILVVI 81 (505)
T ss_pred CCCCCHHHHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcC-CCCEEE
Confidence 3578899998888887764 4568999999998888888888764 78899999999999988887777654 566655
Q ss_pred EecCCCcccccccccCEEEEECC
Q 004925 627 MSLKAGGVALNLTVASHVFLMDP 649 (723)
Q Consensus 627 ~s~~~~~eGlnL~~a~~vI~~d~ 649 (723)
.+ .++- =+-+.....||+=|-
T Consensus 82 GT-rsal-f~p~~~l~lIIVDEe 102 (505)
T TIGR00595 82 GT-RSAL-FLPFKNLGLIIVDEE 102 (505)
T ss_pred CC-hHHH-cCcccCCCEEEEECC
Confidence 44 4321 123556666665543
No 328
>PRK05580 primosome assembly protein PriA; Validated
Probab=81.86 E-value=12 Score=43.60 Aligned_cols=96 Identities=13% Similarity=0.099 Sum_probs=72.2
Q ss_pred CcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhC-CCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEE
Q 004925 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS-GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLM 627 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~-g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~ 627 (723)
.+|.|....+..+.+.+. .+.++||.+.....+..+.+.|++. |..+..++|+++..+|.....+...+ .+.|+|.
T Consensus 171 TGSGKT~v~l~~i~~~l~--~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g-~~~IVVg 247 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLA--QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRG-EAKVVIG 247 (679)
T ss_pred CCChHHHHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcC-CCCEEEe
Confidence 678999998888877764 3568999999999888888888764 88999999999999998888887765 5676665
Q ss_pred ecCCCcccccccccCEEEEECC
Q 004925 628 SLKAGGVALNLTVASHVFLMDP 649 (723)
Q Consensus 628 s~~~~~eGlnL~~a~~vI~~d~ 649 (723)
+..+. =+.+.....+|+=|.
T Consensus 248 Trsal--~~p~~~l~liVvDEe 267 (679)
T PRK05580 248 ARSAL--FLPFKNLGLIIVDEE 267 (679)
T ss_pred ccHHh--cccccCCCEEEEECC
Confidence 53222 234556666666554
No 329
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=81.63 E-value=4.9 Score=44.76 Aligned_cols=43 Identities=23% Similarity=0.092 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhc----cCCCCCCcccCCCCCcHHHHHHHHHhcCc
Q 004925 32 RYQKEWLAWALKQE----ESAIRGGILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 32 p~Q~~~~~~~~~~~----~~~~~g~iLad~~GlGKT~~al~~i~~~~ 74 (723)
|+|...+..++-.. .+..+.++|.-+=|-|||..+.+++.+.+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l 47 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYML 47 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHH
Confidence 78998888777331 12345667888899999998766665444
No 330
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=81.47 E-value=5.3 Score=41.84 Aligned_cols=47 Identities=19% Similarity=0.082 Sum_probs=35.0
Q ss_pred ChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccc
Q 004925 30 LLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 30 L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
++|+|...-..+.....+-...-|+..+.|+|||..|..++....-.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~ 48 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCE 48 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 47888887777776644443345689999999999999888877653
No 331
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=81.12 E-value=3.7 Score=42.72 Aligned_cols=49 Identities=10% Similarity=-0.091 Sum_probs=36.4
Q ss_pred CChHHHHHHHHHHHHhcc-CCC-CCCcccCCCCCcHHHHHHHHHhcCcccc
Q 004925 29 PLLRYQKEWLAWALKQEE-SAI-RGGILADEMGMGKTIQAIALVLAKREIR 77 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~-~~~-~g~iLad~~GlGKT~~al~~i~~~~~~~ 77 (723)
.++|+|...-..+.+... +.. ..-++..+.|+||+..|..++....-..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~ 53 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN 53 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 578888888877776543 222 3457789999999999999888776543
No 332
>CHL00095 clpC Clp protease ATP binding subunit
Probab=81.08 E-value=4.6 Score=48.23 Aligned_cols=24 Identities=38% Similarity=0.354 Sum_probs=20.1
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcC
Q 004925 50 RGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
.+.||..++|+|||..+-+++...
T Consensus 201 ~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999987776654
No 333
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=80.96 E-value=3.4 Score=44.58 Aligned_cols=72 Identities=18% Similarity=0.265 Sum_probs=50.7
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhh-
Q 004925 29 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA- 107 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l- 107 (723)
..+|-|..=..-+-+....+ +.|+|-++.|+|||+.-|+++..+...++.. -.-||-|...+
T Consensus 16 ~iYPEQ~~YM~elKrsLDak-Gh~llEMPSGTGKTvsLLSli~aYq~~~p~~----------------~~KliYCSRTvp 78 (755)
T KOG1131|consen 16 YIYPEQYEYMRELKRSLDAK-GHCLLEMPSGTGKTVSLLSLIIAYQLHYPDE----------------HRKLIYCSRTVP 78 (755)
T ss_pred ccCHHHHHHHHHHHHhhccC-CcEEEECCCCCCcchHHHHHHHHHHHhCCcc----------------cceEEEecCcch
Confidence 67899988666665555566 8999999999999999998888766555421 34478776433
Q ss_pred -HHHHHHHHHh
Q 004925 108 -VTQWVSEINR 117 (723)
Q Consensus 108 -~~qW~~ei~~ 117 (723)
++.-..|++.
T Consensus 79 EieK~l~El~~ 89 (755)
T KOG1131|consen 79 EIEKALEELKR 89 (755)
T ss_pred HHHHHHHHHHH
Confidence 4444455443
No 334
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=80.90 E-value=8 Score=44.73 Aligned_cols=95 Identities=11% Similarity=0.082 Sum_probs=66.8
Q ss_pred CcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHH----HHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceE
Q 004925 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYS----LHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKI 624 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~----L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~v 624 (723)
.+|+|.....-.+...+ ..+.+++|-+.....+..+++. +...|+++..++|+++..+|...++...++ .+.+
T Consensus 265 TGSGKT~va~l~il~~~--~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g-~~~I 341 (630)
T TIGR00643 265 VGSGKTLVAALAMLAAI--EAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASG-QIHL 341 (630)
T ss_pred CCCcHHHHHHHHHHHHH--HcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCC-CCCE
Confidence 56788866544443333 2456899999988766655444 444589999999999999998888888765 6777
Q ss_pred EEEecCCCcccccccccCEEEE
Q 004925 625 FLMSLKAGGVALNLTVASHVFL 646 (723)
Q Consensus 625 ll~s~~~~~eGlnL~~a~~vI~ 646 (723)
+|.+.......+.+.....+|+
T Consensus 342 iVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 342 VVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred EEecHHHHhccccccccceEEE
Confidence 7777666666666666655554
No 335
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=80.83 E-value=6.7 Score=41.71 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=30.5
Q ss_pred eEEEEeeccccccCCCcHHHHHHHhhh-----cCceEEEeCcCCCCchhhHHHHHHHh
Q 004925 244 WERIILDEAHFIKDRRSNTAKAVLALE-----SSYKWALSGTPLQNRVGELYSLVRFL 296 (723)
Q Consensus 244 ~~~vIiDEaH~~kn~~s~~~~~l~~l~-----~~~~l~LTaTP~~n~~~dl~~~l~lL 296 (723)
.++|+||.+=..... ......+..+. ....+.|+||--.....+++..+.-+
T Consensus 216 ~DlVLIDTaG~~~~d-~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~ 272 (374)
T PRK14722 216 KHMVLIDTIGMSQRD-RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSA 272 (374)
T ss_pred CCEEEEcCCCCCccc-HHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHh
Confidence 488999999654222 22333444331 23457799998777767665544443
No 336
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=80.07 E-value=2.7 Score=47.09 Aligned_cols=69 Identities=26% Similarity=0.317 Sum_probs=51.4
Q ss_pred CChHHHHHHHHHHHHhcc-------CCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEE
Q 004925 29 PLLRYQKEWLAWALKQEE-------SAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLV 101 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~-------~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LI 101 (723)
..+....+.+.|.+.+.. ...+|.||..++|+|||+.|-++..... .+++-
T Consensus 249 ~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~----------------------~~fi~ 306 (494)
T COG0464 249 EAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR----------------------SRFIS 306 (494)
T ss_pred HHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC----------------------CeEEE
Confidence 456677788888776655 3446889999999999999988777332 24454
Q ss_pred EechhhHHHHHHHHHhhc
Q 004925 102 ICPVAAVTQWVSEINRFT 119 (723)
Q Consensus 102 v~P~~l~~qW~~ei~~~~ 119 (723)
|-...++..|.-|..+..
T Consensus 307 v~~~~l~sk~vGesek~i 324 (494)
T COG0464 307 VKGSELLSKWVGESEKNI 324 (494)
T ss_pred eeCHHHhccccchHHHHH
Confidence 444599999999988775
No 337
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=80.07 E-value=7.1 Score=44.14 Aligned_cols=40 Identities=18% Similarity=0.366 Sum_probs=25.4
Q ss_pred ccceeeEEEEeeccccccCCCcHHHHHHHhh---hcCceEEEeCcC
Q 004925 239 LHSLKWERIILDEAHFIKDRRSNTAKAVLAL---ESSYKWALSGTP 281 (723)
Q Consensus 239 l~~~~~~~vIiDEaH~~kn~~s~~~~~l~~l---~~~~~l~LTaTP 281 (723)
+..-.|+++|||||+.++... ...+.-. .....|.+|.|=
T Consensus 348 iRGqtfDLLIVDEAqFIk~~a---l~~ilp~l~~~n~k~I~ISS~N 390 (738)
T PHA03368 348 IRGQDFNLLFVDEANFIRPDA---VQTIMGFLNQTNCKIIFVSSTN 390 (738)
T ss_pred ccCCcccEEEEechhhCCHHH---HHHHHHHHhccCccEEEEecCC
Confidence 334478999999999997752 2222222 345567777653
No 338
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=79.62 E-value=15 Score=36.61 Aligned_cols=108 Identities=9% Similarity=0.091 Sum_probs=71.7
Q ss_pred EcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCC--CceEEEEecCCCcccccccccCEEEEECCCCCh
Q 004925 576 FSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDP--DCKIFLMSLKAGGVALNLTVASHVFLMDPWWNP 653 (723)
Q Consensus 576 F~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~--~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~ 653 (723)
...+.+....|...+.. ++.+..++++.+... -.|.++. +..+|++.-..++.|+.|.+-....+.-.+-+.
T Consensus 93 ~~s~~ei~~~l~~~~~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~ 166 (239)
T PF10593_consen 93 PPSWEEIKPELPKAISD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQY 166 (239)
T ss_pred CcCHHHHHHHHHHHHhc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchH
Confidence 34456667777777777 899999998765433 4444432 247788888999999999988888887777777
Q ss_pred hhHHHHHHhhhhcCCccc-EEEEEEEeCCCHHHHHHHHHH
Q 004925 654 AVEQQAQDRIHRIGQYKP-IRIVRFLIENTIEERILKLQE 692 (723)
Q Consensus 654 ~~~~Q~iGRi~R~Gq~~~-V~v~~l~~~~t~ee~~~~~~~ 692 (723)
.++.|. ||- +|-++. ..+-++++...+.+.......
T Consensus 167 DTL~Qm-gRw--FGYR~gY~dl~Ri~~~~~l~~~f~~i~~ 203 (239)
T PF10593_consen 167 DTLMQM-GRW--FGYRPGYEDLCRIYMPEELYDWFRHIAE 203 (239)
T ss_pred HHHHHH-hhc--ccCCcccccceEEecCHHHHHHHHHHHH
Confidence 777774 443 455544 445555666555544444433
No 339
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.56 E-value=9.3 Score=42.90 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=20.4
Q ss_pred CcccCCCCCcHHHHHHHHHhcCcc
Q 004925 52 GILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
.|+..+.|+|||..|..++..+..
T Consensus 41 ~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 578999999999999888876654
No 340
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=79.39 E-value=5.4 Score=46.50 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=20.4
Q ss_pred CCCCCCcccCCCCCcHHHHHHHHHhc
Q 004925 47 SAIRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 47 ~~~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
....+.||.-++|+|||..|-++...
T Consensus 50 ~~~~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 50 DRVGSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 33467899999999999988766643
No 341
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=79.31 E-value=4.8 Score=45.59 Aligned_cols=78 Identities=21% Similarity=0.115 Sum_probs=57.2
Q ss_pred CCCCccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEE
Q 004925 23 PPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVI 102 (723)
Q Consensus 23 p~~~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv 102 (723)
|...-..|...|+.+...++.. +-.|+..++|+|||++++-++..++.....+ -..-|+||+
T Consensus 372 p~~g~~ildsSq~~A~qs~lty-----elsliqgppGTgkt~vtlkav~tLL~n~s~~-------------~~~epIlvv 433 (1025)
T KOG1807|consen 372 PGPGLVILDSSQQFAKQSKLTY-----ELSLIQGPPGTGKTLVTLKAVDTLLLNSSGY-------------TEPEPILVV 433 (1025)
T ss_pred CCCCceeecHHHHHHHHHHhhh-----hhheeecCCCCCceeehHHHHHHHHhccccc-------------ccccceeee
Confidence 3334457778999999999887 5668899999999999887766655433111 112599999
Q ss_pred ec-hhhHHHHHHHHHhh
Q 004925 103 CP-VAAVTQWVSEINRF 118 (723)
Q Consensus 103 ~P-~~l~~qW~~ei~~~ 118 (723)
|- ++.++|.-.-+-.+
T Consensus 434 C~Tnhavdq~ligiy~~ 450 (1025)
T KOG1807|consen 434 CLTNHAVDQYLIGIYYH 450 (1025)
T ss_pred ehhhHHHHHHHHHHHhc
Confidence 98 67889988887654
No 342
>PRK04132 replication factor C small subunit; Provisional
Probab=79.22 E-value=5.7 Score=46.82 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=35.9
Q ss_pred eeEEEEeeccccccCCCcHHHHHHHhh----hcCceEEEeCcCCCCchhhHHHHHHHhccCcC
Q 004925 243 KWERIILDEAHFIKDRRSNTAKAVLAL----ESSYKWALSGTPLQNRVGELYSLVRFLQITPY 301 (723)
Q Consensus 243 ~~~~vIiDEaH~~kn~~s~~~~~l~~l----~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~ 301 (723)
++.+|||||+|.+... ...++.++ ....+++|+.++...-+.-|.+-+..+...+.
T Consensus 630 ~~KVvIIDEaD~Lt~~---AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~l 689 (846)
T PRK04132 630 SFKIIFLDEADALTQD---AQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPL 689 (846)
T ss_pred CCEEEEEECcccCCHH---HHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCC
Confidence 3678999999999543 22233333 34567888888876666666666666654443
No 343
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=78.90 E-value=1.4 Score=45.30 Aligned_cols=17 Identities=12% Similarity=0.176 Sum_probs=13.3
Q ss_pred cCCCCEEEechhhhHHh
Q 004925 141 FSEFDFVITTYSIIEAD 157 (723)
Q Consensus 141 ~~~~~ivi~t~~~l~~~ 157 (723)
...++|||++|.-+-..
T Consensus 209 ~~~Adivi~ny~yll~~ 225 (289)
T smart00488 209 IEFANVVVLPYQYLLDP 225 (289)
T ss_pred hhcCCEEEECHHHHhcH
Confidence 35688999999988654
No 344
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=78.90 E-value=1.4 Score=45.30 Aligned_cols=17 Identities=12% Similarity=0.176 Sum_probs=13.3
Q ss_pred cCCCCEEEechhhhHHh
Q 004925 141 FSEFDFVITTYSIIEAD 157 (723)
Q Consensus 141 ~~~~~ivi~t~~~l~~~ 157 (723)
...++|||++|.-+-..
T Consensus 209 ~~~Adivi~ny~yll~~ 225 (289)
T smart00489 209 IEFANVVVLPYQYLLDP 225 (289)
T ss_pred hhcCCEEEECHHHHhcH
Confidence 35688999999988654
No 345
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=78.85 E-value=10 Score=46.01 Aligned_cols=58 Identities=19% Similarity=0.017 Sum_probs=40.0
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhh
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 107 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l 107 (723)
..|-+-|+.++..+.. .. +-++|-...|+|||.+.-.+.......+ ..++.++|.+-
T Consensus 380 ~~Ls~eQ~~Av~~i~~---~~-r~~~v~G~AGTGKTt~l~~~~~~~e~~G-------------------~~V~g~ApTgk 436 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAG---PA-RIAAVVGRAGAGKTTMMKAAREAWEAAG-------------------YRVVGGALAGK 436 (1102)
T ss_pred CCCCHHHHHHHHHHhc---cC-CeEEEEeCCCCCHHHHHHHHHHHHHHcC-------------------CeEEEEcCcHH
Confidence 4689999999987642 11 4467888999999988766555432221 46788888654
Q ss_pred H
Q 004925 108 V 108 (723)
Q Consensus 108 ~ 108 (723)
.
T Consensus 437 A 437 (1102)
T PRK13826 437 A 437 (1102)
T ss_pred H
Confidence 3
No 346
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=78.59 E-value=1.8 Score=39.81 Aligned_cols=50 Identities=18% Similarity=0.263 Sum_probs=30.0
Q ss_pred eeEEEEeeccccccCCC----cHHHHHHHhhhcCceEEEeCcCCCCchhhHHHH
Q 004925 243 KWERIILDEAHFIKDRR----SNTAKAVLALESSYKWALSGTPLQNRVGELYSL 292 (723)
Q Consensus 243 ~~~~vIiDEaH~~kn~~----s~~~~~l~~l~~~~~l~LTaTP~~n~~~dl~~~ 292 (723)
.+|+||+||.-.+-+.. ......+..-+..--++|||-=.+..+-++.++
T Consensus 95 ~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~ 148 (159)
T cd00561 95 EYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADL 148 (159)
T ss_pred CCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCce
Confidence 57999999998874443 223333333344456999997554444444333
No 347
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=78.48 E-value=21 Score=40.35 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=36.9
Q ss_pred CccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHH
Q 004925 26 LITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIAL 69 (723)
Q Consensus 26 ~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~ 69 (723)
+...++.-|..-.+-+.+-...+ +-||+-.++|+|||+.-|..
T Consensus 12 fPy~PYdIQ~~lM~elyrvLe~G-kIgIfESPTGTGKSLSLiCa 54 (821)
T KOG1133|consen 12 FPYTPYDIQEDLMRELYRVLEEG-KIGIFESPTGTGKSLSLICA 54 (821)
T ss_pred CCCCchhHHHHHHHHHHHHHhcC-CeeeeeCCCCCCchHHHHHH
Confidence 67788999999999988888877 78999999999999986543
No 348
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=78.28 E-value=15 Score=36.05 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=19.0
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCcc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
...+|..+.|+|||-..-++......
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~ 60 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQK 60 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34688999999999876666554443
No 349
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=77.58 E-value=1.1 Score=42.35 Aligned_cols=26 Identities=31% Similarity=0.249 Sum_probs=21.8
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCcc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
.|.+|..++|+|||..|.+++.....
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~ 73 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIR 73 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhcc
Confidence 78889999999999999988876555
No 350
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=77.17 E-value=21 Score=42.13 Aligned_cols=46 Identities=15% Similarity=0.124 Sum_probs=30.7
Q ss_pred CChHHHHHHHHHHHHhc-c-CCCCCCc-ccCCCCCcHHHHHHHHHhcCc
Q 004925 29 PLLRYQKEWLAWALKQE-E-SAIRGGI-LADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~-~-~~~~g~i-Lad~~GlGKT~~al~~i~~~~ 74 (723)
+=|.-|...+..++.-. . ....++| |...+|+|||.++-.++..+.
T Consensus 758 PhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 758 PCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 44677777776655432 2 2323444 799999999999988776543
No 351
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=76.93 E-value=4.7 Score=40.85 Aligned_cols=39 Identities=26% Similarity=0.147 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHh
Q 004925 32 RYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVL 71 (723)
Q Consensus 32 p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~ 71 (723)
|..+..+..++.....+ +..+|..++|+|||..|-++..
T Consensus 5 ~~~~~l~~~~l~~l~~g-~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSG-YPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred HHHHHHHHHHHHHHhcC-CeEEEEcCCCCCHHHHHHHHHH
Confidence 44555555655555555 7789999999999999988776
No 352
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=76.32 E-value=1.1 Score=46.04 Aligned_cols=49 Identities=27% Similarity=0.679 Sum_probs=42.5
Q ss_pred ccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcccc
Q 004925 467 QVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 515 (723)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (723)
+.|.+|.+-..+--+-+|||..|..|+..--.++....||.|+-++.--
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 4578888877888899999999999999888888899999999888743
No 353
>PRK13342 recombination factor protein RarA; Reviewed
Probab=76.02 E-value=8.8 Score=41.81 Aligned_cols=24 Identities=33% Similarity=0.242 Sum_probs=19.5
Q ss_pred CCCCcccCCCCCcHHHHHHHHHhc
Q 004925 49 IRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 49 ~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
..+.+|..++|+|||..|-.+...
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999998776553
No 354
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=75.89 E-value=18 Score=38.56 Aligned_cols=55 Identities=18% Similarity=0.190 Sum_probs=36.6
Q ss_pred eEEEEeeccc-cccCCCcHHHHHHHhh-----hcCceEEEeCcCCCCchhhHHHHHHHhccCc
Q 004925 244 WERIILDEAH-FIKDRRSNTAKAVLAL-----ESSYKWALSGTPLQNRVGELYSLVRFLQITP 300 (723)
Q Consensus 244 ~~~vIiDEaH-~~kn~~s~~~~~l~~l-----~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~ 300 (723)
.|+|.||=+= ..++.. ....+..+ ....-|.||||-=..+..+++..++.++..-
T Consensus 282 ~d~ILVDTaGrs~~D~~--~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~ 342 (407)
T COG1419 282 CDVILVDTAGRSQYDKE--KIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDG 342 (407)
T ss_pred CCEEEEeCCCCCccCHH--HHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcce
Confidence 4889999553 344442 22233333 2344577999998889999999998887553
No 355
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.82 E-value=25 Score=40.43 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=19.7
Q ss_pred CcccCCCCCcHHHHHHHHHhcCcc
Q 004925 52 GILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
.|+..+.|+|||..|..++..+..
T Consensus 42 yLf~Gp~G~GKtt~A~~lAk~l~c 65 (614)
T PRK14971 42 YLFCGPRGVGKTTCARIFAKTINC 65 (614)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 578999999999988877776543
No 356
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=75.67 E-value=7.1 Score=43.54 Aligned_cols=39 Identities=26% Similarity=0.470 Sum_probs=24.5
Q ss_pred ccceeeEEEEeeccccccCCCcHHHHHHHhh---hcCceEEEeCc
Q 004925 239 LHSLKWERIILDEAHFIKDRRSNTAKAVLAL---ESSYKWALSGT 280 (723)
Q Consensus 239 l~~~~~~~vIiDEaH~~kn~~s~~~~~l~~l---~~~~~l~LTaT 280 (723)
+..-.|++++|||||.++... ...+..+ +....+.+|.|
T Consensus 295 iRGQ~fnll~VDEA~FI~~~a---~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 295 IRGQNFHLLLVDEAHFIKKDA---FNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred ccCCCCCEEEEehhhccCHHH---HHHhhhhhcccCceEEEEeCC
Confidence 444468999999999998763 2223322 34445556655
No 357
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=75.55 E-value=1.1 Score=41.25 Aligned_cols=48 Identities=33% Similarity=0.841 Sum_probs=37.6
Q ss_pred cccccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCC
Q 004925 462 AEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIP 511 (723)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (723)
.+.+...|.+|-...+.|+++.|||.||..|...... -...|..|...
T Consensus 192 ~e~IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~--kg~~C~~Cgk~ 239 (259)
T COG5152 192 GEKIPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQ--KGDECGVCGKA 239 (259)
T ss_pred CCCCceeehhchhhccchhhhhcchhHHHHHHHHHhc--cCCcceecchh
Confidence 3556788999999999999999999999999865444 34556666443
No 358
>PRK07952 DNA replication protein DnaC; Validated
Probab=75.19 E-value=5.5 Score=39.71 Aligned_cols=44 Identities=23% Similarity=0.088 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhc---cCCCCCCcccCCCCCcHHHHHHHHHhcCcc
Q 004925 32 RYQKEWLAWALKQE---ESAIRGGILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 32 p~Q~~~~~~~~~~~---~~~~~g~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
+.|..++..+.+.. .....+.+|...+|+|||..+.+++..+..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~ 125 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLL 125 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35655555544322 222257789999999999999888877654
No 359
>PRK10865 protein disaggregation chaperone; Provisional
Probab=74.98 E-value=9.9 Score=45.55 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcc-CCCCCCcccCCCCCcHHHHHHHHHhcCc
Q 004925 34 QKEWLAWALKQEE-SAIRGGILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 34 Q~~~~~~~~~~~~-~~~~g~iLad~~GlGKT~~al~~i~~~~ 74 (723)
|..-+..++.... +...+.||..++|+|||..+-+++....
T Consensus 183 r~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 183 RDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred CHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 3334555554332 2235789999999999999977776543
No 360
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.96 E-value=18 Score=40.21 Aligned_cols=42 Identities=21% Similarity=0.094 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhccC-CCCCC-cccCCCCCcHHHHHHHHHhcCc
Q 004925 33 YQKEWLAWALKQEES-AIRGG-ILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 33 ~Q~~~~~~~~~~~~~-~~~g~-iLad~~GlGKT~~al~~i~~~~ 74 (723)
.|...+..+.+.... ...++ |+..+.|+|||.+|..++....
T Consensus 20 Gq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 20 GQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455555555544432 33444 6799999999999988777654
No 361
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=74.74 E-value=4.8 Score=41.47 Aligned_cols=39 Identities=21% Similarity=0.144 Sum_probs=29.8
Q ss_pred EEEEeeccccccCCCcHHHHHHHhhhcCceEEEeCcCCCCc
Q 004925 245 ERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNR 285 (723)
Q Consensus 245 ~~vIiDEaH~~kn~~s~~~~~l~~l~~~~~l~LTaTP~~n~ 285 (723)
.+||+||||+. .-.+.-.+|.++....+..+||.+.+-+
T Consensus 245 AfVIlDEaQNt--T~~QmKMfLTRiGf~skmvItGD~tQiD 283 (348)
T COG1702 245 AFVILDEAQNT--TVGQMKMFLTRIGFESKMVITGDITQID 283 (348)
T ss_pred eEEEEeccccc--chhhhceeeeeecCCceEEEEcCccccc
Confidence 57999999993 2234445677888899999999998654
No 362
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=74.67 E-value=12 Score=44.01 Aligned_cols=25 Identities=36% Similarity=0.383 Sum_probs=20.6
Q ss_pred CCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 49 IRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 49 ~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
..+.||.-++|+|||..+-+++...
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3678999999999999987776654
No 363
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=74.17 E-value=19 Score=34.27 Aligned_cols=27 Identities=30% Similarity=0.286 Sum_probs=21.7
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCccc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
...|+..+.|+|||..+..++......
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 345789999999999998888776653
No 364
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=73.60 E-value=19 Score=41.78 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=20.1
Q ss_pred CcccCCCCCcHHHHHHHHHhcCcc
Q 004925 52 GILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
.|+..+.|+|||.+|-.++..+..
T Consensus 43 YLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcc
Confidence 478999999999999888776554
No 365
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=73.35 E-value=4.9 Score=38.04 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=22.7
Q ss_pred eEEEEeeccccccCCCcHHHHHHHhhhc--CceEEEeC
Q 004925 244 WERIILDEAHFIKDRRSNTAKAVLALES--SYKWALSG 279 (723)
Q Consensus 244 ~~~vIiDEaH~~kn~~s~~~~~l~~l~~--~~~l~LTa 279 (723)
.+.|.|||||.+... ....+..+.. ...++.+|
T Consensus 83 ~~~v~IDEaQF~~~~---~v~~l~~lad~lgi~Vi~~G 117 (201)
T COG1435 83 VDCVLIDEAQFFDEE---LVYVLNELADRLGIPVICYG 117 (201)
T ss_pred cCEEEEehhHhCCHH---HHHHHHHHHhhcCCEEEEec
Confidence 578999999999664 5556666644 44555555
No 366
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.33 E-value=1.6 Score=45.81 Aligned_cols=44 Identities=36% Similarity=0.875 Sum_probs=39.8
Q ss_pred cccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCC
Q 004925 464 HVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCS 509 (723)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (723)
.....|.+|.+....|.+++|+|.+|..|+..... ....||.|+
T Consensus 11 ~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~--~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE--GPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcCccccccchHhHHHHHHhcC--CCcCCcccC
Confidence 35578999999999999999999999999988887 779999999
No 367
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=72.79 E-value=15 Score=40.51 Aligned_cols=44 Identities=18% Similarity=-0.031 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhccC-CCCC-CcccCCCCCcHHHHHHHHHhcCccc
Q 004925 33 YQKEWLAWALKQEES-AIRG-GILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 33 ~Q~~~~~~~~~~~~~-~~~g-~iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
.|...+.++.+.... ...+ .|+..+.|+|||.+|..++..+...
T Consensus 21 Gq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 21 GQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred CcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 355555555544432 2334 5789999999999999888876543
No 368
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=72.77 E-value=3.9 Score=41.32 Aligned_cols=62 Identities=21% Similarity=0.463 Sum_probs=50.2
Q ss_pred CCCccccccccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcccccc
Q 004925 456 GETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFT 517 (723)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (723)
.+.+++.....+.|.+|-....--.+++|+|..|+-|-.-...-.....|+.|+++-.....
T Consensus 51 tsSaddtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~f 112 (493)
T COG5236 51 TSSADDTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAVVF 112 (493)
T ss_pred cccccccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccceEEE
Confidence 34445556677899999988888889999999999999887777788999999988664433
No 369
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=72.67 E-value=17 Score=39.33 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=31.1
Q ss_pred cchHHHHHHHHHHHHHhh--cCCceEEEEcccH---hHHHHHHHHHHhCCCeEEEeecCC
Q 004925 550 SSTKIEALREEIRFMVER--DGSAKGIVFSQFT---SFLDLINYSLHKSGVNCVQLVGSM 604 (723)
Q Consensus 550 ~s~Kl~~l~~~l~~~~~~--~~~~KvIIF~~~~---~~~~~l~~~L~~~g~~~~~i~g~~ 604 (723)
...++.+++..|....+. .++.=+|||..-. .....|-+.|..+|+....++...
T Consensus 453 ~~deivwi~~qI~~~~edeLe~dDIiVi~lDp~t~Rgy~~~li~sL~s~giq~hl~gvd~ 512 (660)
T COG3972 453 GPDEIVWIIIQIKEFREDELEQDDIIVIFLDPGTMRGYIYELIHSLKSKGIQQHLWGVDI 512 (660)
T ss_pred cchhhHHHHHHHHHhcccccccCCEEEEecCCccccchHHHHHHHHHHhhhhhhccccCc
Confidence 345777777777763211 1233456665543 456677777777776654444333
No 370
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=72.43 E-value=16 Score=38.43 Aligned_cols=49 Identities=10% Similarity=-0.029 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHHHhccC-CCCCC-cccCCCCCcHHHHHHHHHhcCcccc
Q 004925 29 PLLRYQKEWLAWALKQEES-AIRGG-ILADEMGMGKTIQAIALVLAKREIR 77 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~~-~~~g~-iLad~~GlGKT~~al~~i~~~~~~~ 77 (723)
.++|+|...-..+.+.... ...++ |+..+.|+||+..|.+++..+.-..
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~ 52 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQ 52 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 4678888888777766542 33444 5789999999999999988877643
No 371
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=72.20 E-value=15 Score=44.07 Aligned_cols=40 Identities=23% Similarity=0.206 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcc-CCCCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 34 QKEWLAWALKQEE-SAIRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 34 Q~~~~~~~~~~~~-~~~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
|.+-+.+++.... +...+.||.-++|+|||..+=+++...
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 5555666665322 233678999999999999986666544
No 372
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=72.06 E-value=23 Score=41.95 Aligned_cols=67 Identities=9% Similarity=0.206 Sum_probs=44.9
Q ss_pred CceEEEEcccHh----HHHHHHHHHHhCC-CeEEE-eecCCCHHHHHHHHHhhcCCCCceEEEEecCCCccccc
Q 004925 570 SAKGIVFSQFTS----FLDLINYSLHKSG-VNCVQ-LVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALN 637 (723)
Q Consensus 570 ~~KvIIF~~~~~----~~~~l~~~L~~~g-~~~~~-i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGln 637 (723)
+.|++|...... +.+.|..+-...| ..+.. +||.++..+++.++++|.++ +..|+|.|++-+..-.+
T Consensus 125 gkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~g-dfdIlitTs~FL~k~~e 197 (1187)
T COG1110 125 GKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESG-DFDILITTSQFLSKRFE 197 (1187)
T ss_pred CCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcC-CccEEEEeHHHHHhhHH
Confidence 456655555443 3444444444444 44333 89999999999999999986 88888888766654333
No 373
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=71.96 E-value=21 Score=37.17 Aligned_cols=44 Identities=11% Similarity=0.111 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhccCC--CCCCcccCCCCCcHHHHHHHHHhcCcccc
Q 004925 34 QKEWLAWALKQEESA--IRGGILADEMGMGKTIQAIALVLAKREIR 77 (723)
Q Consensus 34 Q~~~~~~~~~~~~~~--~~g~iLad~~GlGKT~~al~~i~~~~~~~ 77 (723)
|-++...+.+....+ ...-|+..+.|+||+..|.+++.......
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 444444444433222 25568899999999999999998876543
No 374
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=71.34 E-value=11 Score=44.13 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=19.5
Q ss_pred CCCCcccCCCCCcHHHHHHHHHhc
Q 004925 49 IRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 49 ~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
..+.||.-++|+|||..+=++...
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 367799999999999998776654
No 375
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=71.31 E-value=5.1 Score=37.98 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=32.8
Q ss_pred CcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhhHHHHHHHHHhh
Q 004925 52 GILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRF 118 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~~qW~~ei~~~ 118 (723)
.++..++|+|||..++.++......+ .+++++....-..+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g-------------------~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG-------------------EPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC-------------------CcEEEEECCCCHHHHHHHHHHc
Confidence 46788999999999988877654332 4778887755555555544433
No 376
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=71.31 E-value=13 Score=43.05 Aligned_cols=83 Identities=16% Similarity=0.184 Sum_probs=67.1
Q ss_pred ccccCcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhC-CCeEEEeecCCCHHHHHHHHHhhcCCCCce
Q 004925 545 LDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS-GVNCVQLVGSMSIPARDAAINRFTEDPDCK 623 (723)
Q Consensus 545 ~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~-g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~ 623 (723)
+.-..+|.|.+..++++.+.++ .|..+||..........+...|+.. |.++..++++.++.+|.....+...+ ..+
T Consensus 222 l~GvTGSGKTEvYl~~i~~~L~--~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G-~~~ 298 (730)
T COG1198 222 LDGVTGSGKTEVYLEAIAKVLA--QGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRG-EAR 298 (730)
T ss_pred EeCCCCCcHHHHHHHHHHHHHH--cCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcC-Cce
Confidence 3446889999999999999986 4478888888887766666666554 89999999999999999999999876 778
Q ss_pred EEEEecCC
Q 004925 624 IFLMSLKA 631 (723)
Q Consensus 624 vll~s~~~ 631 (723)
|+|-+ ++
T Consensus 299 vVIGt-RS 305 (730)
T COG1198 299 VVIGT-RS 305 (730)
T ss_pred EEEEe-ch
Confidence 76644 54
No 377
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=71.16 E-value=4.8 Score=44.60 Aligned_cols=48 Identities=27% Similarity=0.322 Sum_probs=36.7
Q ss_pred CCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hhhHHHHHHHHHhh
Q 004925 48 AIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAAVTQWVSEINRF 118 (723)
Q Consensus 48 ~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~l~~qW~~ei~~~ 118 (723)
...|.+|+.++|+|||+.|=+++... +...|-+- +-|++.|.-|=.+-
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa-----------------------g~NFisVKGPELlNkYVGESErA 592 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA-----------------------GANFISVKGPELLNKYVGESERA 592 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc-----------------------cCceEeecCHHHHHHHhhhHHHH
Confidence 45788999999999999997777543 45566666 66899998886544
No 378
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=71.06 E-value=22 Score=42.80 Aligned_cols=98 Identities=10% Similarity=-0.014 Sum_probs=71.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHh----CCCeEEEeecCCCHHHHHHHHHhhcCCCCceE
Q 004925 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK----SGVNCVQLVGSMSIPARDAAINRFTEDPDCKI 624 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~----~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~v 624 (723)
.+++|....+..+-..+. .+.+++|.+..+..+......|++ .++++..++|..+..++...++.+..+ .+.+
T Consensus 481 TGsGKT~val~a~l~al~--~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g-~~dI 557 (926)
T TIGR00580 481 VGFGKTEVAMRAAFKAVL--DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASG-KIDI 557 (926)
T ss_pred CCccHHHHHHHHHHHHHH--hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcC-CceE
Confidence 567888766655444332 346899999999877766665554 478888999999988999999988865 6788
Q ss_pred EEEecCCCcccccccccCEEEEECC
Q 004925 625 FLMSLKAGGVALNLTVASHVFLMDP 649 (723)
Q Consensus 625 ll~s~~~~~eGlnL~~a~~vI~~d~ 649 (723)
+|.|.......+.+.....+|+=+.
T Consensus 558 VIGTp~ll~~~v~f~~L~llVIDEa 582 (926)
T TIGR00580 558 LIGTHKLLQKDVKFKDLGLLIIDEE 582 (926)
T ss_pred EEchHHHhhCCCCcccCCEEEeecc
Confidence 8877766666777777777666333
No 379
>PRK11823 DNA repair protein RadA; Provisional
Probab=70.86 E-value=8.9 Score=42.15 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=30.9
Q ss_pred cccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhhHHHHHHHHHh
Q 004925 53 ILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINR 117 (723)
Q Consensus 53 iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~~qW~~ei~~ 117 (723)
+|.-++|+|||..++.++....... +++|.|.-..-..|......+
T Consensus 84 lI~G~pG~GKTtL~lq~a~~~a~~g-------------------~~vlYvs~Ees~~qi~~ra~r 129 (446)
T PRK11823 84 LIGGDPGIGKSTLLLQVAARLAAAG-------------------GKVLYVSGEESASQIKLRAER 129 (446)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcC-------------------CeEEEEEccccHHHHHHHHHH
Confidence 6889999999999888776543211 467777765545565544443
No 380
>PRK12377 putative replication protein; Provisional
Probab=70.84 E-value=8.7 Score=38.44 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=22.1
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCcc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
.+.+|..++|+|||..|.+++..+..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~ 127 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLA 127 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 67788999999999999888877654
No 381
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=70.78 E-value=9.9 Score=41.18 Aligned_cols=38 Identities=16% Similarity=0.117 Sum_probs=24.9
Q ss_pred eEEEEeeccccccCCCcHHHHHHHhhh---cCceEEEeCcCCC
Q 004925 244 WERIILDEAHFIKDRRSNTAKAVLALE---SSYKWALSGTPLQ 283 (723)
Q Consensus 244 ~~~vIiDEaH~~kn~~s~~~~~l~~l~---~~~~l~LTaTP~~ 283 (723)
++++++|||..+... .....+.+++ ...++++|.||-.
T Consensus 102 ~~~~~idEa~~~~~~--~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 102 IAIIWFEEASQLTFE--DIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred eeeehhhhhhhcCHH--HHHHHHHHhhccCCccEEEEEcCcCC
Confidence 589999999998432 3333444443 2234899999953
No 382
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=70.66 E-value=8.2 Score=37.78 Aligned_cols=21 Identities=33% Similarity=0.281 Sum_probs=16.2
Q ss_pred CCCcHHHHHHHHHhcCccccC
Q 004925 58 MGMGKTIQAIALVLAKREIRG 78 (723)
Q Consensus 58 ~GlGKT~~al~~i~~~~~~~~ 78 (723)
=|.|||..+++++..+...+.
T Consensus 11 GGaGKTT~~~~LAs~la~~G~ 31 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGA 31 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCC
Confidence 489999999888877765543
No 383
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=70.52 E-value=30 Score=35.96 Aligned_cols=27 Identities=26% Similarity=0.167 Sum_probs=22.7
Q ss_pred CcccCCCCCcHHHHHHHHHhcCccccC
Q 004925 52 GILADEMGMGKTIQAIALVLAKREIRG 78 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~~~~~ 78 (723)
.|+..+.|+|||..|.+++..+.....
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~~ 53 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCENP 53 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCCc
Confidence 688999999999999999987765443
No 384
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=70.00 E-value=25 Score=36.62 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=17.8
Q ss_pred cccCCCCCcHHHHHHHHHhcCcc
Q 004925 53 ILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 53 iLad~~GlGKT~~al~~i~~~~~ 75 (723)
++.-..|+|||.++..++..+..
T Consensus 118 ~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 118 LVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred EEECCCCCcHHHHHHHHHHHHHh
Confidence 45669999999999777776543
No 385
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.84 E-value=0.9 Score=46.19 Aligned_cols=49 Identities=31% Similarity=0.729 Sum_probs=39.0
Q ss_pred ccccccccccCCCCC-cccccCCccchhhhhhhhcCcCCCCCCCCCCCccc
Q 004925 465 VQQVCGLCNDLADDP-VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 514 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (723)
....|++|+++.... ....|+|-||.+|++..... +.-.||.|+..+..
T Consensus 42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~-gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRS-GNNECPTCRKKLVS 91 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh-cCCCCchHHhhccc
Confidence 456799999887764 46789999999999987765 56679999887653
No 386
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=69.55 E-value=9.3 Score=45.01 Aligned_cols=70 Identities=14% Similarity=0.094 Sum_probs=48.7
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hhh
Q 004925 29 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAA 107 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~l 107 (723)
.|-|-|++++.+- . +..++-...|+|||.+.+.-++++...... +...+|+|+- +..
T Consensus 9 ~Ln~~Q~~av~~~--~-----g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v---------------~p~~IL~lTFT~kA 66 (721)
T PRK11773 9 SLNDKQREAVAAP--L-----GNMLVLAGAGSGKTRVLVHRIAWLMQVENA---------------SPYSIMAVTFTNKA 66 (721)
T ss_pred hcCHHHHHHHhCC--C-----CCEEEEecCCCCHHHHHHHHHHHHHHcCCC---------------ChhHeEeeeccHHH
Confidence 6889999988742 1 456777789999999998888877643221 1257899988 445
Q ss_pred HHHHHHHHHhhcC
Q 004925 108 VTQWVSEINRFTS 120 (723)
Q Consensus 108 ~~qW~~ei~~~~~ 120 (723)
...-++-+.+.++
T Consensus 67 A~Em~~Rl~~~~~ 79 (721)
T PRK11773 67 AAEMRHRIEQLLG 79 (721)
T ss_pred HHHHHHHHHHHhc
Confidence 5666666666554
No 387
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=69.42 E-value=7.9 Score=40.35 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=29.1
Q ss_pred ChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCc
Q 004925 30 LLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 30 L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~ 74 (723)
+-+.|...+..++.. + ++.|++-++|+|||.++-+++....
T Consensus 129 ~~~~~~~~L~~~v~~---~-~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 129 MTEAQASVIRSAIDS---R-LNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred CCHHHHHHHHHHHHc---C-CeEEEECCCCCCHHHHHHHHHHHHh
Confidence 345666665555543 2 6778999999999999877776553
No 388
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=69.05 E-value=69 Score=36.77 Aligned_cols=38 Identities=26% Similarity=0.341 Sum_probs=24.0
Q ss_pred eeeEEEEeeccccccCCCcHHHHHHHhh-h-cCceEEEeCcCC
Q 004925 242 LKWERIILDEAHFIKDRRSNTAKAVLAL-E-SSYKWALSGTPL 282 (723)
Q Consensus 242 ~~~~~vIiDEaH~~kn~~s~~~~~l~~l-~-~~~~l~LTaTP~ 282 (723)
..+++||||||+.+... ....+.-. . ...++++..||.
T Consensus 293 ~~~DLLIVDEAAfI~~~---~l~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 293 QNPDLVIVDEAAFVNPG---ALLSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred CCCCEEEEECcccCCHH---HHHHHHHHHccCCCceEEEeCCC
Confidence 35799999999999764 33333332 2 355666655664
No 389
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=68.75 E-value=12 Score=43.99 Aligned_cols=70 Identities=14% Similarity=0.069 Sum_probs=49.3
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEech-hh
Q 004925 29 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AA 107 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~-~l 107 (723)
.|-|-|++++.+- . +.+++....|+|||.+.+.-++++...... +...+|+|+.. ..
T Consensus 4 ~Ln~~Q~~av~~~----~---g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v---------------~p~~IL~lTFTnkA 61 (715)
T TIGR01075 4 GLNDKQREAVAAP----P---GNLLVLAGAGSGKTRVLTHRIAWLLSVENA---------------SPHSIMAVTFTNKA 61 (715)
T ss_pred ccCHHHHHHHcCC----C---CCEEEEecCCCCHHHHHHHHHHHHHHcCCC---------------CHHHeEeeeccHHH
Confidence 5889999987641 1 556778889999999998888877653221 12678999884 45
Q ss_pred HHHHHHHHHhhcC
Q 004925 108 VTQWVSEINRFTS 120 (723)
Q Consensus 108 ~~qW~~ei~~~~~ 120 (723)
...-++-+.+.++
T Consensus 62 A~em~~Rl~~~~~ 74 (715)
T TIGR01075 62 AAEMRHRIGALLG 74 (715)
T ss_pred HHHHHHHHHHHhc
Confidence 5666666666654
No 390
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.75 E-value=1.5 Score=31.39 Aligned_cols=48 Identities=29% Similarity=0.760 Sum_probs=40.2
Q ss_pred cccccccccCCCCCcccccCC-ccchhhhhhhhcCcCCCCCCCCCCCccc
Q 004925 466 QQVCGLCNDLADDPVVTNCGH-AFCKACLFDSSASKFVAKCPTCSIPLTV 514 (723)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (723)
..+|.+|.+.+-+.++.-||| -.|.+|-...... +.+-||.|++++..
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~-~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKA-LHGCCPICRAPIKD 55 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHc-cCCcCcchhhHHHH
Confidence 367999999999999999988 6888888766655 88999999998763
No 391
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=68.68 E-value=15 Score=44.22 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcc-CCCCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 34 QKEWLAWALKQEE-SAIRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 34 Q~~~~~~~~~~~~-~~~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
|..-+..+..... +...+.||.-++|+|||..+-+++...
T Consensus 178 r~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 178 RDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3334555554332 233677889999999999987776654
No 392
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=68.32 E-value=28 Score=44.74 Aligned_cols=44 Identities=25% Similarity=0.210 Sum_probs=32.9
Q ss_pred ccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 27 ITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 27 ~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
...|-+-|++++..++.... +-.+|--..|+|||.+.-.++..+
T Consensus 965 ~~~Lt~~Q~~Av~~il~s~d---r~~~I~G~AGTGKTT~l~~v~~~~ 1008 (1747)
T PRK13709 965 MEGLTSGQRAATRMILESTD---RFTVVQGYAGVGKTTQFRAVMSAV 1008 (1747)
T ss_pred cCCCCHHHHHHHHHHHhCCC---cEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34789999999998875422 456888899999999875555443
No 393
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=68.15 E-value=34 Score=38.11 Aligned_cols=23 Identities=26% Similarity=0.167 Sum_probs=17.0
Q ss_pred CcccCCCCCcHHHHHHHHHhcCc
Q 004925 52 GILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~ 74 (723)
.+|...+|+|||.++..++..+.
T Consensus 353 IaLVGPtGvGKTTtaakLAa~la 375 (559)
T PRK12727 353 IALVGPTGAGKTTTIAKLAQRFA 375 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 34567899999999877766543
No 394
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=67.63 E-value=5.8 Score=46.16 Aligned_cols=70 Identities=11% Similarity=0.025 Sum_probs=48.0
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEech-hh
Q 004925 29 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AA 107 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~-~l 107 (723)
.|-|-|++++.+. . +.+++...+|+|||.+.+.-++++...... +...+|+|+.. ..
T Consensus 2 ~Ln~~Q~~av~~~--~-----g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v---------------~p~~IL~lTFT~kA 59 (672)
T PRK10919 2 RLNPGQQQAVEFV--T-----GPCLVLAGAGSGKTRVITNKIAHLIRGCGY---------------QARHIAAVTFTNKA 59 (672)
T ss_pred CCCHHHHHHHhCC--C-----CCEEEEecCCCCHHHHHHHHHHHHHHhcCC---------------CHHHeeeEechHHH
Confidence 4778899988752 1 556777889999999998888887653221 12578999984 44
Q ss_pred HHHHHHHHHhhcC
Q 004925 108 VTQWVSEINRFTS 120 (723)
Q Consensus 108 ~~qW~~ei~~~~~ 120 (723)
...-++-+...++
T Consensus 60 A~em~~Rl~~~l~ 72 (672)
T PRK10919 60 AREMKERVAQTLG 72 (672)
T ss_pred HHHHHHHHHHHhC
Confidence 5555555655544
No 395
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=67.47 E-value=37 Score=34.55 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=18.9
Q ss_pred CcccCCCCCcHHHHHHHHHhcCcc
Q 004925 52 GILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
.++.-.+|+|||.++..++..+..
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~ 98 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKK 98 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHh
Confidence 456689999999999888776543
No 396
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.10 E-value=4.1 Score=41.87 Aligned_cols=53 Identities=25% Similarity=0.579 Sum_probs=43.8
Q ss_pred cccccccccccccCCCCCcccccCC-ccchhhhhhhhcCcCCCCCCCCCCCccccc
Q 004925 462 AEHVQQVCGLCNDLADDPVVTNCGH-AFCKACLFDSSASKFVAKCPTCSIPLTVDF 516 (723)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (723)
..+...+|-+|..-..+.++++|+| =.|.+|.+... -..-.||.|+.++..-+
T Consensus 286 ~~~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr--~q~n~CPICRqpi~~ll 339 (349)
T KOG4265|consen 286 ESESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLR--YQTNNCPICRQPIEELL 339 (349)
T ss_pred cccCCCeeEEEecCCcceEEecchhhehhHhHHHHHH--HhhcCCCccccchHhhh
Confidence 4456789999999999999999988 68999998777 34557999999987443
No 397
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=66.76 E-value=28 Score=44.21 Aligned_cols=45 Identities=27% Similarity=0.276 Sum_probs=32.8
Q ss_pred CCccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhc
Q 004925 25 DLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 25 ~~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
.....|-+-|++++..++.... +-.+|--..|+|||.+.-+++..
T Consensus 831 ~~~~~Lt~~Qr~Av~~iLts~d---r~~~IqG~AGTGKTT~l~~i~~~ 875 (1623)
T PRK14712 831 ELMEKLTSGQRAATRMILETSD---RFTVVQGYAGVGKTTQFRAVMSA 875 (1623)
T ss_pred hhhcccCHHHHHHHHHHHhCCC---ceEEEEeCCCCCHHHHHHHHHHH
Confidence 3344789999999998875432 34678889999999986444443
No 398
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=66.68 E-value=31 Score=36.29 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhc-cCCCCCC-cccCCCCCcHHHHHHHHHhcCccc
Q 004925 33 YQKEWLAWALKQE-ESAIRGG-ILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 33 ~Q~~~~~~~~~~~-~~~~~g~-iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
.|...+..+.+.. .+...++ |+..+.|.|||..|..++......
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~ 55 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCL 55 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 3444555444443 2334555 889999999999998888876654
No 399
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=66.66 E-value=2.9 Score=40.60 Aligned_cols=45 Identities=33% Similarity=0.825 Sum_probs=34.2
Q ss_pred ccccccccCCCC-C-cccccCCccchhhhhhhhcCcCCCCCCCCCCCcccc
Q 004925 467 QVCGLCNDLADD-P-VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 515 (723)
Q Consensus 467 ~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (723)
.+|..|.-.... + -++.|+|++|..|....... .|+.|+.++...
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~----~C~lCkk~ir~i 50 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSPD----VCPLCKKSIRII 50 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCCcc----ccccccceeeee
Confidence 457788755552 2 48999999999999766655 899999996543
No 400
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=66.57 E-value=5 Score=41.53 Aligned_cols=26 Identities=31% Similarity=0.235 Sum_probs=20.0
Q ss_pred CCCCCCcccCCCCCcHHHHHHHHHhc
Q 004925 47 SAIRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 47 ~~~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
+.....||..++|+|||..|=.++..
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~t 185 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIAST 185 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhh
Confidence 45677899999999999887555443
No 401
>PRK06450 threonine synthase; Validated
Probab=66.56 E-value=54 Score=34.54 Aligned_cols=76 Identities=13% Similarity=0.049 Sum_probs=57.9
Q ss_pred ccCcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEE
Q 004925 547 EFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFL 626 (723)
Q Consensus 547 ~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll 626 (723)
+...|-|.+...-.|....+ .+.+.||-+..-.+...++.+-...|+++..+--...+..+...++.+ +..|+.
T Consensus 75 nPTGSfKDRga~~~i~~a~~--~g~~~vv~aSsGN~g~slA~~aa~~G~~~~i~vP~~~~~~k~~~i~~~----GA~vi~ 148 (338)
T PRK06450 75 NPTGSYKDRGSVTLISYLAE--KGIKQISEDSSGNAGASIAAYGAAAGIEVKIFVPETASGGKLKQIESY----GAEVVR 148 (338)
T ss_pred CCcCCCHHHHHHHHHHHHHH--cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHc----CCEEEE
Confidence 45678899988888887654 345667777777888899999999999998888776777777888887 445555
Q ss_pred Ee
Q 004925 627 MS 628 (723)
Q Consensus 627 ~s 628 (723)
+.
T Consensus 149 v~ 150 (338)
T PRK06450 149 VR 150 (338)
T ss_pred EC
Confidence 43
No 402
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=66.28 E-value=26 Score=37.85 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=32.4
Q ss_pred eeEEEEeeccccccCCCcHHHHHHHhh--------hcCceEEEeCcCCCCchhhHHHHHHHhccC
Q 004925 243 KWERIILDEAHFIKDRRSNTAKAVLAL--------ESSYKWALSGTPLQNRVGELYSLVRFLQIT 299 (723)
Q Consensus 243 ~~~~vIiDEaH~~kn~~s~~~~~l~~l--------~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~ 299 (723)
.+++||||=+-+.... ......+..+ .....+.|+||--.....++...+..++++
T Consensus 299 ~~D~VLIDTaGr~~rd-~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~ 362 (432)
T PRK12724 299 GSELILIDTAGYSHRN-LEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYR 362 (432)
T ss_pred CCCEEEEeCCCCCccC-HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCC
Confidence 4688999976554222 2233333332 113457799987766666666666655533
No 403
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=66.23 E-value=5.7 Score=41.08 Aligned_cols=36 Identities=28% Similarity=0.280 Sum_probs=27.0
Q ss_pred HHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCc
Q 004925 39 AWALKQEESAIRGGILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 39 ~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~ 74 (723)
-.|.+.-...-+|.+++.++|+|||..|+++...+-
T Consensus 55 v~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG 90 (450)
T COG1224 55 VKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELG 90 (450)
T ss_pred HHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhC
Confidence 345555444447889999999999999998887643
No 404
>PRK14873 primosome assembly protein PriA; Provisional
Probab=65.96 E-value=32 Score=39.87 Aligned_cols=96 Identities=9% Similarity=0.034 Sum_probs=71.1
Q ss_pred cchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhC-C-CeEEEeecCCCHHHHHHHHHhhcCCCCceEEEE
Q 004925 550 SSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS-G-VNCVQLVGSMSIPARDAAINRFTEDPDCKIFLM 627 (723)
Q Consensus 550 ~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~-g-~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~ 627 (723)
+|.|.+..++++...+. .+..+||...-......+.+.|+.. | ..++.++++++..+|.....+...+ ...|+|
T Consensus 170 GSGKTevyl~~i~~~l~--~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G-~~~IVi- 245 (665)
T PRK14873 170 GEDWARRLAAAAAATLR--AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRG-QARVVV- 245 (665)
T ss_pred CCcHHHHHHHHHHHHHH--cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCC-CCcEEE-
Confidence 68999999999999875 4567899988888888888888765 5 7799999999999999999998765 667655
Q ss_pred ecCCCcccccccccCEEEEECCC
Q 004925 628 SLKAGGVALNLTVASHVFLMDPW 650 (723)
Q Consensus 628 s~~~~~eGlnL~~a~~vI~~d~~ 650 (723)
.|.++- =.-+..-..||+-|-+
T Consensus 246 GtRSAv-FaP~~~LgLIIvdEEh 267 (665)
T PRK14873 246 GTRSAV-FAPVEDLGLVAIWDDG 267 (665)
T ss_pred EcceeE-EeccCCCCEEEEEcCC
Confidence 446541 1223344455555544
No 405
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=65.62 E-value=2.1 Score=39.95 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=32.6
Q ss_pred eeeEEEEeeccccccCCC----cHHHHHHHhhhcCceEEEeCcCCCCchhhHHHHHHHh
Q 004925 242 LKWERIILDEAHFIKDRR----SNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFL 296 (723)
Q Consensus 242 ~~~~~vIiDEaH~~kn~~----s~~~~~l~~l~~~~~l~LTaTP~~n~~~dl~~~l~lL 296 (723)
-.+|+||+||.-.+-+.. ......+..-+..--++|||.-.+..+-++.+++.-+
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~VTEm 154 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLVTEM 154 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCceeeee
Confidence 368999999998765544 2233333333444579999975544444444444333
No 406
>PRK08939 primosomal protein DnaI; Reviewed
Probab=65.33 E-value=13 Score=38.54 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.0
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCcc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
+|.+|..++|+|||..+.+++..+..
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~ 182 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAK 182 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 67888899999999999888877653
No 407
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=65.19 E-value=15 Score=40.34 Aligned_cols=74 Identities=15% Similarity=0.139 Sum_probs=45.1
Q ss_pred cCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhhHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 004925 55 ADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNR 134 (723)
Q Consensus 55 ad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~~qW~~ei~~~~~~~~~~~~~~~g~~~ 134 (723)
+.++.+|||.-||--+... +..+..-|..|+. .|+-+-+.......-.++|..+
T Consensus 197 ~GPTNSGKTy~ALqrl~~a-----------------------ksGvycGPLrLLA---~EV~~r~na~gipCdL~TGeE~ 250 (700)
T KOG0953|consen 197 VGPTNSGKTYRALQRLKSA-----------------------KSGVYCGPLRLLA---HEVYDRLNALGIPCDLLTGEER 250 (700)
T ss_pred eCCCCCchhHHHHHHHhhh-----------------------ccceecchHHHHH---HHHHHHhhhcCCCcccccccee
Confidence 6789999999887544432 4557788876653 3444433333555666777665
Q ss_pred CCCccccCCCCEEEechhhh
Q 004925 135 ERSAKQFSEFDFVITTYSII 154 (723)
Q Consensus 135 ~~~~~~~~~~~ivi~t~~~l 154 (723)
......-..+..+-.|.+++
T Consensus 251 ~~~~~~~~~a~hvScTVEM~ 270 (700)
T KOG0953|consen 251 RFVLDNGNPAQHVSCTVEMV 270 (700)
T ss_pred eecCCCCCcccceEEEEEEe
Confidence 55444334455666666664
No 408
>PRK10689 transcription-repair coupling factor; Provisional
Probab=65.01 E-value=31 Score=42.70 Aligned_cols=95 Identities=12% Similarity=-0.001 Sum_probs=67.2
Q ss_pred CcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHh----CCCeEEEeecCCCHHHHHHHHHhhcCCCCceE
Q 004925 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK----SGVNCVQLVGSMSIPARDAAINRFTEDPDCKI 624 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~----~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~v 624 (723)
.+++|....+..+.... ..+.+++|.+..+..+..+...|++ .++.+..++|..+..++..+++....+ .+.|
T Consensus 630 TGsGKT~val~aa~~~~--~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g-~~dI 706 (1147)
T PRK10689 630 VGFGKTEVAMRAAFLAV--ENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEG-KIDI 706 (1147)
T ss_pred CCcCHHHHHHHHHHHHH--HcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhC-CCCE
Confidence 46788876554443332 2457899999999887766666654 367788899999999998888888754 6778
Q ss_pred EEEecCCCcccccccccCEEEE
Q 004925 625 FLMSLKAGGVALNLTVASHVFL 646 (723)
Q Consensus 625 ll~s~~~~~eGlnL~~a~~vI~ 646 (723)
+|.|.......+++.....+|+
T Consensus 707 VVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 707 LIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred EEECHHHHhCCCCHhhCCEEEE
Confidence 8877666655566666666554
No 409
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=65.00 E-value=27 Score=38.43 Aligned_cols=46 Identities=13% Similarity=0.194 Sum_probs=31.3
Q ss_pred cccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhhHHHHHHHHHh
Q 004925 53 ILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINR 117 (723)
Q Consensus 53 iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~~qW~~ei~~ 117 (723)
+|+-++|+|||..++.++......+ +++|.|...--..|......+
T Consensus 98 lI~G~pGsGKTTL~lq~a~~~a~~g-------------------~kvlYvs~EEs~~qi~~ra~r 143 (454)
T TIGR00416 98 LIGGDPGIGKSTLLLQVACQLAKNQ-------------------MKVLYVSGEESLQQIKMRAIR 143 (454)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhcC-------------------CcEEEEECcCCHHHHHHHHHH
Confidence 7789999999999988776543321 467787775555565544433
No 410
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=64.74 E-value=5.8 Score=39.71 Aligned_cols=32 Identities=34% Similarity=0.366 Sum_probs=23.9
Q ss_pred HHhccCCCCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 42 LKQEESAIRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 42 ~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
++.....-+..+||.++|+|||..|+++...+
T Consensus 57 ik~KkmaGravLlaGppgtGKTAlAlaisqEL 88 (456)
T KOG1942|consen 57 IKSKKMAGRAVLLAGPPGTGKTALALAISQEL 88 (456)
T ss_pred HHhhhccCcEEEEecCCCCchhHHHHHHHHHh
Confidence 33333333788999999999999998887654
No 411
>PHA00350 putative assembly protein
Probab=64.71 E-value=13 Score=39.76 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=12.8
Q ss_pred ccCCCCCcHHHHHHHH
Q 004925 54 LADEMGMGKTIQAIAL 69 (723)
Q Consensus 54 Lad~~GlGKT~~al~~ 69 (723)
+--.+|+|||+.|+..
T Consensus 6 ~tG~pGSGKT~~aV~~ 21 (399)
T PHA00350 6 IVGRPGSYKSYEAVVY 21 (399)
T ss_pred EecCCCCchhHHHHHH
Confidence 4456899999999873
No 412
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=64.41 E-value=8.3 Score=39.09 Aligned_cols=43 Identities=16% Similarity=0.060 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCc
Q 004925 29 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~ 74 (723)
.+.+.|.+.+.+++.... +..+++-++|+|||.+.-+++....
T Consensus 63 g~~~~~~~~l~~~~~~~~---GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 63 GLKPENLEIFRKLLEKPH---GIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCCHHHHHHHHHHHhcCC---CEEEEECCCCCcHHHHHHHHHhhhC
Confidence 567788888877765421 3357899999999999888776653
No 413
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=64.10 E-value=14 Score=36.50 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=39.7
Q ss_pred CccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEech
Q 004925 26 LITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV 105 (723)
Q Consensus 26 ~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~ 105 (723)
+.....+|+.....-......+. +-..+..++|+|||+..=++.+.. ... ..++|+.|+
T Consensus 29 ~~~~~a~h~e~l~~l~~~i~d~q-g~~~vtGevGsGKTv~~Ral~~s~-~~d-------------------~~~~v~i~~ 87 (269)
T COG3267 29 LDYWAADHNEALLMLHAAIADGQ-GILAVTGEVGSGKTVLRRALLASL-NED-------------------QVAVVVIDK 87 (269)
T ss_pred hhhhhhhhhHHHHHHHHHHhcCC-ceEEEEecCCCchhHHHHHHHHhc-CCC-------------------ceEEEEecC
Confidence 33445556655443322222222 345678899999999886444333 221 345567776
Q ss_pred hh------HHHHHHHHHh
Q 004925 106 AA------VTQWVSEINR 117 (723)
Q Consensus 106 ~l------~~qW~~ei~~ 117 (723)
.. +.-|..++..
T Consensus 88 ~~~s~~~~~~ai~~~l~~ 105 (269)
T COG3267 88 PTLSDATLLEAIVADLES 105 (269)
T ss_pred cchhHHHHHHHHHHHhcc
Confidence 53 4667777644
No 414
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=64.01 E-value=68 Score=34.55 Aligned_cols=52 Identities=12% Similarity=0.254 Sum_probs=30.5
Q ss_pred eEEEEeeccccccCCCcHHHHHHHhh---h-cCceEEEeC--cCCCC--chhhHHHHHHH
Q 004925 244 WERIILDEAHFIKDRRSNTAKAVLAL---E-SSYKWALSG--TPLQN--RVGELYSLVRF 295 (723)
Q Consensus 244 ~~~vIiDEaH~~kn~~s~~~~~l~~l---~-~~~~l~LTa--TP~~n--~~~dl~~~l~l 295 (723)
.++++||-.+.+.+...-....+.-+ . ....+++|+ +|-.- ...+|.+-+.+
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~ 235 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEW 235 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhc
Confidence 48899999999977754433333333 2 334788888 45322 22345554444
No 415
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.99 E-value=4.5 Score=40.32 Aligned_cols=52 Identities=35% Similarity=0.669 Sum_probs=40.7
Q ss_pred cccccccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcc
Q 004925 460 ADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 513 (723)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (723)
.+...+...|.+|-.....|+++.|+|.||..|...... ....|..|.....
T Consensus 235 ~D~~~~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~q--k~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 235 EDIELLPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQ--KGEKCYVCSQQTH 286 (313)
T ss_pred CCcccCCccccccccccccchhhcCCceeehhhhccccc--cCCcceecccccc
Confidence 344556677999999999999999999999999854443 3577888866644
No 416
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=63.87 E-value=11 Score=41.20 Aligned_cols=63 Identities=25% Similarity=0.367 Sum_probs=41.1
Q ss_pred CCCCCCcccCCCCCcHHHHH--HHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechh--------------hHHH
Q 004925 47 SAIRGGILADEMGMGKTIQA--IALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVA--------------AVTQ 110 (723)
Q Consensus 47 ~~~~g~iLad~~GlGKT~~a--l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~--------------l~~q 110 (723)
.+++|.||-.++|+|||++| |+-+...++ |-+|=-|.- |+.-
T Consensus 254 ~HVKGiLLyGPPGTGKTLiARqIGkMLNAre----------------------PKIVNGPeIL~KYVGeSE~NvR~LFaD 311 (744)
T KOG0741|consen 254 KHVKGILLYGPPGTGKTLIARQIGKMLNARE----------------------PKIVNGPEILNKYVGESEENVRKLFAD 311 (744)
T ss_pred cceeeEEEECCCCCChhHHHHHHHHHhcCCC----------------------CcccCcHHHHHHhhcccHHHHHHHHHh
Confidence 56799999999999999998 444443322 223333432 3344
Q ss_pred HHHHHHhhcCCCCcEEEEEeC
Q 004925 111 WVSEINRFTSVGSTKVLIYHG 131 (723)
Q Consensus 111 W~~ei~~~~~~~~~~~~~~~g 131 (723)
-.+|++...+.+.++++++.-
T Consensus 312 AEeE~r~~g~~SgLHIIIFDE 332 (744)
T KOG0741|consen 312 AEEEQRRLGANSGLHIIIFDE 332 (744)
T ss_pred HHHHHHhhCccCCceEEEehh
Confidence 455666677777888888744
No 417
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=63.78 E-value=27 Score=34.66 Aligned_cols=61 Identities=15% Similarity=0.144 Sum_probs=34.4
Q ss_pred CcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec---hhhHHHHHHHHHhhc
Q 004925 52 GILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP---VAAVTQWVSEINRFT 119 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P---~~l~~qW~~ei~~~~ 119 (723)
++|+-+.|+|||..++.++.....-....+. -......+++|++.- ..-+.+-...+...+
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~-------~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~ 67 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGG-------GLKVTEPGRVVYLSAEDPREEIHRRLEAILQHL 67 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCC-------ccccCCCceEEEEECCCCHHHHHHHHHHHHhhc
Confidence 5788899999999998887654321111100 000112368888883 344454455554443
No 418
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=63.05 E-value=5.8 Score=28.88 Aligned_cols=46 Identities=30% Similarity=0.761 Sum_probs=35.9
Q ss_pred cccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcccc
Q 004925 466 QQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 515 (723)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (723)
.+.|-.|........+++|+|..|..|..-. .--.||.|.+++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~----rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGE----RYNGCPFCGTPFEFD 52 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChh----hccCCCCCCCcccCC
Confidence 4556777778788999999999999998533 334699999988743
No 419
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=62.96 E-value=8.5 Score=39.08 Aligned_cols=43 Identities=19% Similarity=0.043 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhccC-CCCCCcccCCCCCcHHHHHHHHHhcCcc
Q 004925 33 YQKEWLAWALKQEES-AIRGGILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 33 ~Q~~~~~~~~~~~~~-~~~g~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
+|-..+.-+.+...+ ...+-++-.++|+|||-+|+++...+..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 788877777655443 3355677889999999999999987654
No 420
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=62.79 E-value=8.1 Score=40.47 Aligned_cols=48 Identities=21% Similarity=0.364 Sum_probs=37.8
Q ss_pred CCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hhhHHHHHHHHHhh
Q 004925 48 AIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAAVTQWVSEINRF 118 (723)
Q Consensus 48 ~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~l~~qW~~ei~~~ 118 (723)
.-+|.++..++|+|||+.|=+++.. ++.|.+=|. ..|...|.-|=.+.
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATE-----------------------c~tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATE-----------------------CGTTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHh-----------------------hcCeEEEechhhhhhhhccchHHH
Confidence 4578899999999999998777653 367788777 45789999886655
No 421
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=62.16 E-value=26 Score=37.33 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=35.7
Q ss_pred cccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhhHHHHHHHHHhhc
Q 004925 53 ILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFT 119 (723)
Q Consensus 53 iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~~qW~~ei~~~~ 119 (723)
+++-++|.||+..-|-++..+... +++|.|.=.--..||+---.+..
T Consensus 97 LIgGdPGIGKSTLLLQva~~lA~~--------------------~~vLYVsGEES~~QiklRA~RL~ 143 (456)
T COG1066 97 LIGGDPGIGKSTLLLQVAARLAKR--------------------GKVLYVSGEESLQQIKLRADRLG 143 (456)
T ss_pred EEccCCCCCHHHHHHHHHHHHHhc--------------------CcEEEEeCCcCHHHHHHHHHHhC
Confidence 679999999998766665554332 57788888777899998887774
No 422
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=62.12 E-value=35 Score=34.82 Aligned_cols=66 Identities=9% Similarity=0.117 Sum_probs=54.5
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcC-----CCCceEEEEecCCCcccccccc
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE-----DPDCKIFLMSLKAGGVALNLTV 640 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~-----~~~~~vll~s~~~~~eGlnL~~ 640 (723)
.+.+|||..--..+....+..|+..|+++.++.|....+.-..+.+.|++ -++..+++++ |.|++.
T Consensus 75 npd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~------GwDy~~ 145 (337)
T COG2247 75 NPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVY------GWDYAD 145 (337)
T ss_pred CCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEe------ccccHH
Confidence 44599999999999999999999999999999999988888888888863 2345677776 666663
No 423
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=61.88 E-value=14 Score=36.39 Aligned_cols=41 Identities=27% Similarity=0.404 Sum_probs=26.5
Q ss_pred eeEEEEeeccccccCCCcHHHHHHHhhhcCceEEEeCcCCCCch
Q 004925 243 KWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRV 286 (723)
Q Consensus 243 ~~~~vIiDEaH~~kn~~s~~~~~l~~l~~~~~l~LTaTP~~n~~ 286 (723)
.++.+||||++.+-.. ....+..+.....+.+-|=|.+-..
T Consensus 62 ~~~~liiDE~~~~~~g---~l~~l~~~~~~~~~~l~GDp~Q~~~ 102 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPG---YLLLLLSLSPAKNVILFGDPLQIPY 102 (234)
T ss_pred cCCEEEEeccccCChH---HHHHHHhhccCcceEEEECchhccC
Confidence 4688999999998543 2223444444446777788876543
No 424
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=61.58 E-value=6.6 Score=41.18 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=20.4
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~ 74 (723)
++.|++.++|+|||..|+++...+-
T Consensus 51 r~iLiaGppGtGKTAlA~~ia~eLG 75 (398)
T PF06068_consen 51 RAILIAGPPGTGKTALAMAIAKELG 75 (398)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHCT
T ss_pred cEEEEeCCCCCCchHHHHHHHHHhC
Confidence 7778999999999999999888654
No 425
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=61.48 E-value=18 Score=37.34 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=32.2
Q ss_pred eeEEEEeeccccccCCCcHHHHHHHhh---------hcCceEEE--eCcCCCCchhhHHHHHHHhc
Q 004925 243 KWERIILDEAHFIKDRRSNTAKAVLAL---------ESSYKWAL--SGTPLQNRVGELYSLVRFLQ 297 (723)
Q Consensus 243 ~~~~vIiDEaH~~kn~~s~~~~~l~~l---------~~~~~l~L--TaTP~~n~~~dl~~~l~lL~ 297 (723)
.+|.|+||=|=++-|.. .+..-|.++ .+++..+| =||--+|.+.....+-..++
T Consensus 221 ~~DvvliDTAGRLhnk~-nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~ 285 (340)
T COG0552 221 GIDVVLIDTAGRLHNKK-NLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVG 285 (340)
T ss_pred CCCEEEEeCcccccCch-hHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcC
Confidence 57999999998886654 223333333 23444443 58887777666555444443
No 426
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.88 E-value=5 Score=42.72 Aligned_cols=49 Identities=37% Similarity=0.731 Sum_probs=41.0
Q ss_pred cccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCccc
Q 004925 464 HVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 514 (723)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (723)
.....|..|......|+.++|||.+|..|+.... +....||.|+.++..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~l--d~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSL--DQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHh--ccCCCCccccccccc
Confidence 3456799999999999999999999999987733 388999999887663
No 427
>PHA00012 I assembly protein
Probab=60.81 E-value=8.3 Score=39.69 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=18.0
Q ss_pred cccCCCCCcHHHHHHHHHhcCccc
Q 004925 53 ILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 53 iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
++.--+|+|||+.|+.-+...+..
T Consensus 5 lITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEecCCCCCchHHHHHHHHHHHHc
Confidence 345679999999999877665554
No 428
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=60.31 E-value=4.6 Score=39.90 Aligned_cols=46 Identities=37% Similarity=0.839 Sum_probs=36.8
Q ss_pred ccccccccccCCCCCccc-ccCCccchhhhhhhhcCcCCCCCCCCCCC
Q 004925 465 VQQVCGLCNDLADDPVVT-NCGHAFCKACLFDSSASKFVAKCPTCSIP 511 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (723)
+...|..|..+...|..+ +|++.||.+|+....-.+ .-.||.|.+.
T Consensus 273 i~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~ds-Df~CpnC~rk 319 (427)
T COG5222 273 ISLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDS-DFKCPNCSRK 319 (427)
T ss_pred ccccCcchhhhhhCcccCccccchHHHHHHhhhhhhc-cccCCCcccc
Confidence 346799999999999988 779999999997655544 3468999764
No 429
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=60.21 E-value=13 Score=38.32 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=21.1
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~ 74 (723)
++.+++-++|+|||..+-+++....
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhh
Confidence 7889999999999999877776553
No 430
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=60.11 E-value=34 Score=39.98 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=17.1
Q ss_pred CcccCCCCCcHHHHHHHHHhcC
Q 004925 52 GILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~ 73 (723)
..|...+|+|||.++.-++..+
T Consensus 188 i~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 188 LALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred EEEECCCCCcHHHHHHHHHhhH
Confidence 3578899999999986666554
No 431
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=60.05 E-value=72 Score=28.64 Aligned_cols=84 Identities=19% Similarity=0.212 Sum_probs=55.7
Q ss_pred eEEEEcccHhHHHHHHHHHHhCCCe--EEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEECC
Q 004925 572 KGIVFSQFTSFLDLINYSLHKSGVN--CVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDP 649 (723)
Q Consensus 572 KvIIF~~~~~~~~~l~~~L~~~g~~--~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~ 649 (723)
.|=+++|.-.....+..++...|+. ...-.|....-.-...++.|.+|+..+++++- ++.
T Consensus 3 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly------------------~E~ 64 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLY------------------LEG 64 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEE------------------ES-
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEE------------------ccC
Confidence 5668999999999999999988655 45555655556677899999999888877655 555
Q ss_pred CCChhhHHHHHHhhhhcCCcccEEEEE
Q 004925 650 WWNPAVEQQAQDRIHRIGQYKPIRIVR 676 (723)
Q Consensus 650 ~wn~~~~~Q~iGRi~R~Gq~~~V~v~~ 676 (723)
.-++..+.++..|+.|. |+|.++.
T Consensus 65 ~~d~~~f~~~~~~a~~~---KPVv~lk 88 (138)
T PF13607_consen 65 IGDGRRFLEAARRAARR---KPVVVLK 88 (138)
T ss_dssp -S-HHHHHHHHHHHCCC---S-EEEEE
T ss_pred CCCHHHHHHHHHHHhcC---CCEEEEe
Confidence 56788888888888773 7877754
No 432
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=59.70 E-value=38 Score=36.77 Aligned_cols=54 Identities=15% Similarity=0.110 Sum_probs=31.5
Q ss_pred eEEEEeeccccccCCCcHHHHHHHhhh-----cCceEEEeCcCCCCchhhHHHHHHHhcc
Q 004925 244 WERIILDEAHFIKDRRSNTAKAVLALE-----SSYKWALSGTPLQNRVGELYSLVRFLQI 298 (723)
Q Consensus 244 ~~~vIiDEaH~~kn~~s~~~~~l~~l~-----~~~~l~LTaTP~~n~~~dl~~~l~lL~~ 298 (723)
++.|+||.+=...+ .......+..+. .+..+.|+||--.+...++...++.+++
T Consensus 270 ~d~VLIDTaGrsqr-d~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~ 328 (420)
T PRK14721 270 KHMVLIDTVGMSQR-DQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGI 328 (420)
T ss_pred CCEEEecCCCCCcc-hHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCC
Confidence 57899998622211 223344444442 2344669999777777777766665543
No 433
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=59.68 E-value=11 Score=44.16 Aligned_cols=70 Identities=13% Similarity=0.053 Sum_probs=48.3
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hhh
Q 004925 29 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAA 107 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~l 107 (723)
.|-|-|+.++.+. . +.+++-...|+|||.+.+.-+.++...... +.+.+|+|+. +..
T Consensus 1 ~Ln~~Q~~av~~~--~-----~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~---------------~p~~IL~vTFt~~A 58 (664)
T TIGR01074 1 KLNPQQQEAVEYV--T-----GPCLVLAGAGSGKTRVITNKIAYLIQNCGY---------------KARNIAAVTFTNKA 58 (664)
T ss_pred CCCHHHHHHHhCC--C-----CCEEEEecCCCCHHHHHHHHHHHHHHhcCC---------------CHHHeEEEeccHHH
Confidence 3678898877641 1 556777889999999998888877643211 1146677765 667
Q ss_pred HHHHHHHHHhhcC
Q 004925 108 VTQWVSEINRFTS 120 (723)
Q Consensus 108 ~~qW~~ei~~~~~ 120 (723)
...-+..+.+.++
T Consensus 59 a~em~~Rl~~~l~ 71 (664)
T TIGR01074 59 AREMKERVAKTLG 71 (664)
T ss_pred HHHHHHHHHHHhC
Confidence 7777777777654
No 434
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=59.54 E-value=2.4 Score=42.95 Aligned_cols=46 Identities=35% Similarity=0.829 Sum_probs=38.4
Q ss_pred cccccccccCCCC-CcccccCCccchhhhhhhhcCcCCCCCCCCCCCcc
Q 004925 466 QQVCGLCNDLADD-PVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 513 (723)
Q Consensus 466 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (723)
...|..|....-+ ..+.-|.|.||.+|+-+...+ ...||+|...+-
T Consensus 15 ~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~--~~~CP~C~i~ih 61 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE--SKYCPTCDIVIH 61 (331)
T ss_pred ceehhhccceeecchhHHHHHHHHHHHHHHHHHHH--hccCCccceecc
Confidence 3468889866555 678999999999999999988 899999987765
No 435
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=59.45 E-value=13 Score=41.22 Aligned_cols=42 Identities=14% Similarity=0.121 Sum_probs=32.2
Q ss_pred cCChHHHHHHHHHHHHhccCCCCC-CcccCCCCCcHHHHHHHHHhcC
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRG-GILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g-~iLad~~GlGKT~~al~~i~~~ 73 (723)
..+-|.|++.+.+++... +| .+++-++|+|||.+.-+++...
T Consensus 224 Lg~~~~~~~~l~~~~~~~----~GlilitGptGSGKTTtL~a~L~~l 266 (486)
T TIGR02533 224 LGMSPELLSRFERLIRRP----HGIILVTGPTGSGKTTTLYAALSRL 266 (486)
T ss_pred cCCCHHHHHHHHHHHhcC----CCEEEEEcCCCCCHHHHHHHHHhcc
Confidence 367788998888877652 33 4689999999999987776654
No 436
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=58.53 E-value=16 Score=38.05 Aligned_cols=49 Identities=14% Similarity=0.132 Sum_probs=30.8
Q ss_pred eeeEEEEeeccccccCCCcHHHHHHHhhhcCceEEEeCcCCCCchhhHHHHHHHh
Q 004925 242 LKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFL 296 (723)
Q Consensus 242 ~~~~~vIiDEaH~~kn~~s~~~~~l~~l~~~~~l~LTaTP~~n~~~dl~~~l~lL 296 (723)
.++|+||+.|.=. . ....++..+.+.+.-.+ +|-..+++.+...-+..+
T Consensus 218 ~~PD~IivGEiR~---~--Ea~~~l~A~~tGh~G~~-tTiHa~s~~~ai~Rl~~l 266 (319)
T PRK13894 218 MRPDRILVGEVRG---P--EALDLLMAWNTGHEGGA-ATLHANNAKAGLDRLKSL 266 (319)
T ss_pred CCCCEEEEeccCC---H--HHHHHHHHHHcCCCceE-EEECCCCHHHHHHHHHHH
Confidence 4689999999743 2 23456677766655333 566677777766554433
No 437
>PHA00673 acetyltransferase domain containing protein
Probab=58.44 E-value=20 Score=32.75 Aligned_cols=48 Identities=21% Similarity=0.025 Sum_probs=38.0
Q ss_pred cceeeEEEEeeccccccCCCcHHHHHHHhh---hcCceEEEeCcCCCCchh
Q 004925 240 HSLKWERIILDEAHFIKDRRSNTAKAVLAL---ESSYKWALSGTPLQNRVG 287 (723)
Q Consensus 240 ~~~~~~~vIiDEaH~~kn~~s~~~~~l~~l---~~~~~l~LTaTP~~n~~~ 287 (723)
.....+.|.||+.|+-++-.+.+.+.+... ...++|-+||||..|..+
T Consensus 84 ~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 84 LIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred cEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 334688999999999998887777766655 457889999999988743
No 438
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=57.87 E-value=31 Score=37.49 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=18.8
Q ss_pred CcccCCCCCcHHHHHHHHHhcCcc
Q 004925 52 GILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
.+++-..|+|||.++..++..+..
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~ 126 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQR 126 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 356788999999999877776543
No 439
>PF12846 AAA_10: AAA-like domain
Probab=57.54 E-value=10 Score=39.05 Aligned_cols=46 Identities=13% Similarity=0.116 Sum_probs=31.6
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhhHHHHHHH
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSE 114 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~~qW~~e 114 (723)
+++++.-.+|+|||.++..++......+ ..++|+=|+.=...|.+.
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~g-------------------~~~~i~D~~g~~~~~~~~ 47 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRRG-------------------PRVVIFDPKGDYSPLARA 47 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHcC-------------------CCEEEEcCCchHHHHHHh
Confidence 4677888999999999887776655543 366777676544444443
No 440
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=57.42 E-value=14 Score=41.54 Aligned_cols=95 Identities=11% Similarity=0.135 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCC-------eEEEeecCCCHHHHHHHHHhhcC----CCCc
Q 004925 554 IEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGV-------NCVQLVGSMSIPARDAAINRFTE----DPDC 622 (723)
Q Consensus 554 l~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~-------~~~~i~g~~~~~~r~~~i~~F~~----~~~~ 622 (723)
++.|-..+..+...-| .-||+|-..-+.+..+.+..++.|+ +.+.+-...+ -.+++..|.. +.+.
T Consensus 614 l~~l~~~~~nL~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~Ga 689 (821)
T KOG1133|consen 614 IKDLGSSISNLSNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGA 689 (821)
T ss_pred HHHHHHHHHHHHhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCe
Confidence 3444455555544445 4788888888888888888887654 3333333333 2356666653 2223
Q ss_pred eEEEEecCCCccccccc--ccCEEEEECCCCC
Q 004925 623 KIFLMSLKAGGVALNLT--VASHVFLMDPWWN 652 (723)
Q Consensus 623 ~vll~s~~~~~eGlnL~--~a~~vI~~d~~wn 652 (723)
-.|-+=-.-++||||++ -|+.||....|+-
T Consensus 690 iLlaVVGGKlSEGINF~D~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 690 ILLAVVGGKLSEGINFSDDLGRAVVVVGLPYP 721 (821)
T ss_pred EEEEEeccccccccccccccccEEEEeecCCC
Confidence 22222235567999999 4788888888764
No 441
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=57.40 E-value=1.3e+02 Score=33.00 Aligned_cols=94 Identities=18% Similarity=0.133 Sum_probs=58.4
Q ss_pred CcchHHHHHHH-HHHHH-----HhhcCCceEEEEcccHhHHHHHHHHHH----hCCCeEEEeecCCCHHHHHHHHHhhcC
Q 004925 549 QSSTKIEALRE-EIRFM-----VERDGSAKGIVFSQFTSFLDLINYSLH----KSGVNCVQLVGSMSIPARDAAINRFTE 618 (723)
Q Consensus 549 ~~s~Kl~~l~~-~l~~~-----~~~~~~~KvIIF~~~~~~~~~l~~~L~----~~g~~~~~i~g~~~~~~r~~~i~~F~~ 618 (723)
..|.|..+++- .+.+. +..+.+.=.||.+..+..+..+....+ ..|+.++.++|+++.-++...++ .
T Consensus 269 tgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk---~ 345 (731)
T KOG0339|consen 269 TGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK---E 345 (731)
T ss_pred ccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh---c
Confidence 45667665542 22222 112333445777787776655544443 34899999999999877766666 2
Q ss_pred CCCceEEEEecCCCc-----ccccccccCEEEEE
Q 004925 619 DPDCKIFLMSLKAGG-----VALNLTVASHVFLM 647 (723)
Q Consensus 619 ~~~~~vll~s~~~~~-----eGlnL~~a~~vI~~ 647 (723)
++-+++++..-+- -|+||.+++++++=
T Consensus 346 --g~EivVaTPgRlid~VkmKatn~~rvS~LV~D 377 (731)
T KOG0339|consen 346 --GAEIVVATPGRLIDMVKMKATNLSRVSYLVLD 377 (731)
T ss_pred --CCeEEEechHHHHHHHHhhcccceeeeEEEEe
Confidence 4555666654322 38899999999873
No 442
>PRK10436 hypothetical protein; Provisional
Probab=57.37 E-value=13 Score=41.02 Aligned_cols=43 Identities=19% Similarity=0.122 Sum_probs=32.0
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
..+-|.|...+..++.... +-.|++-++|+|||.+..+++...
T Consensus 200 LG~~~~~~~~l~~~~~~~~---GliLvtGpTGSGKTTtL~a~l~~~ 242 (462)
T PRK10436 200 LGMTPAQLAQFRQALQQPQ---GLILVTGPTGSGKTVTLYSALQTL 242 (462)
T ss_pred cCcCHHHHHHHHHHHHhcC---CeEEEECCCCCChHHHHHHHHHhh
Confidence 3677788888888775521 334679999999999987777664
No 443
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=57.36 E-value=62 Score=27.99 Aligned_cols=97 Identities=13% Similarity=0.073 Sum_probs=62.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCC---CeEEEeecCCCHHHHHHHHHhhcCCCCceEE
Q 004925 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSG---VNCVQLVGSMSIPARDAAINRFTEDPDCKIF 625 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g---~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vl 625 (723)
.+++|--.+...+..........++||.+............+.... ..+..+++........ ... .....++
T Consensus 9 ~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~i~ 83 (144)
T cd00046 9 TGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE---KLL--SGKTDIV 83 (144)
T ss_pred CCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH---HHh--cCCCCEE
Confidence 5678988888888877655566799999999988877777766553 7778888776544333 111 2255667
Q ss_pred EEecCCCcccccc----cccCEEEEECCC
Q 004925 626 LMSLKAGGVALNL----TVASHVFLMDPW 650 (723)
Q Consensus 626 l~s~~~~~eGlnL----~~a~~vI~~d~~ 650 (723)
+++.......... .....+|++|-.
T Consensus 84 i~t~~~~~~~~~~~~~~~~~~~~iiiDE~ 112 (144)
T cd00046 84 VGTPGRLLDELERLKLSLKKLDLLILDEA 112 (144)
T ss_pred EECcHHHHHHHHcCCcchhcCCEEEEeCH
Confidence 7776655544432 223445555654
No 444
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=57.36 E-value=69 Score=26.66 Aligned_cols=56 Identities=9% Similarity=-0.023 Sum_probs=37.5
Q ss_pred ceEEEEccc------HhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEE
Q 004925 571 AKGIVFSQF------TSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFL 626 (723)
Q Consensus 571 ~KvIIF~~~------~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll 626 (723)
.+|+||+.. =..-..+.++|...|+++..++=....+.+..+.+......-++|+|
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 499999763 23466788899999999888775545555555555444444466655
No 445
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=57.04 E-value=11 Score=41.18 Aligned_cols=46 Identities=17% Similarity=0.105 Sum_probs=33.8
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccc
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
..+.|+|...+..++++.. +=.|+..++|+|||.+..+++......
T Consensus 240 Lg~~~~~~~~~~~~~~~p~---GliLvTGPTGSGKTTTLY~~L~~ln~~ 285 (500)
T COG2804 240 LGMSPFQLARLLRLLNRPQ---GLILVTGPTGSGKTTTLYAALSELNTP 285 (500)
T ss_pred hCCCHHHHHHHHHHHhCCC---eEEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence 3567888888887776632 112558999999999998888876543
No 446
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=56.80 E-value=4.6 Score=35.56 Aligned_cols=23 Identities=35% Similarity=0.294 Sum_probs=16.5
Q ss_pred CcccCCCCCcHHHHHHHHHhcCc
Q 004925 52 GILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~ 74 (723)
++|-+.+|+|||..+-+++...-
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~ 24 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG 24 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT
T ss_pred EeeECCCccHHHHHHHHHHHHcC
Confidence 57889999999999988887653
No 447
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=56.74 E-value=64 Score=32.72 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=30.1
Q ss_pred eeEEEEeeccccccCCCcHHHHHHHhh----hcCc-eEEEeCcCCCCchhhHHHHHHHhc
Q 004925 243 KWERIILDEAHFIKDRRSNTAKAVLAL----ESSY-KWALSGTPLQNRVGELYSLVRFLQ 297 (723)
Q Consensus 243 ~~~~vIiDEaH~~kn~~s~~~~~l~~l----~~~~-~l~LTaTP~~n~~~dl~~~l~lL~ 297 (723)
.+++||||-+=+.-... .....+..+ .... .+.|+||--.+...++...++-++
T Consensus 154 ~~D~ViIDt~Gr~~~~~-~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~ 212 (270)
T PRK06731 154 RVDYILIDTAGKNYRAS-ETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIH 212 (270)
T ss_pred CCCEEEEECCCCCcCCH-HHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCCCC
Confidence 46999999886543221 222223222 2333 455899876666666655555444
No 448
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=55.98 E-value=42 Score=44.14 Aligned_cols=41 Identities=20% Similarity=0.115 Sum_probs=30.4
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHh
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVL 71 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~ 71 (723)
..|-+-|+.++..++.... +-.+|--..|+|||.+..+++.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~---~~~~i~G~AGtGKTt~l~~~~~ 1058 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKD---RFVAVQGLAGVGKTTMLESRYK 1058 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCC---cEEEEEeCCCCCHHHhHHHHHH
Confidence 4789999999998765422 3456678899999998854433
No 449
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=55.93 E-value=1e+02 Score=29.30 Aligned_cols=95 Identities=13% Similarity=0.101 Sum_probs=57.6
Q ss_pred CcchHH-HHHHHHHHHHHhh--cCCceEEEEcccHhHHHHHHHHHH----hCCCeEEEeecCCCHHHHHHHHHhhcCCCC
Q 004925 549 QSSTKI-EALREEIRFMVER--DGSAKGIVFSQFTSFLDLINYSLH----KSGVNCVQLVGSMSIPARDAAINRFTEDPD 621 (723)
Q Consensus 549 ~~s~Kl-~~l~~~l~~~~~~--~~~~KvIIF~~~~~~~~~l~~~L~----~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~ 621 (723)
.+++|- ..+..++..+... ..+.++||.+.....+......++ ..++.+..++|+.+..+....+. .+
T Consensus 45 TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 119 (203)
T cd00268 45 TGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK-----RG 119 (203)
T ss_pred CCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc-----CC
Confidence 566775 3456666665543 356689999998876665544443 34788899999887655433332 35
Q ss_pred ceEEEEecCCC-----cccccccccCEEEEEC
Q 004925 622 CKIFLMSLKAG-----GVALNLTVASHVFLMD 648 (723)
Q Consensus 622 ~~vll~s~~~~-----~eGlnL~~a~~vI~~d 648 (723)
+.+++++.... ..-.++...+.+|+=+
T Consensus 120 ~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE 151 (203)
T cd00268 120 PHIVVATPGRLLDLLERGKLDLSKVKYLVLDE 151 (203)
T ss_pred CCEEEEChHHHHHHHHcCCCChhhCCEEEEeC
Confidence 66777774321 1125566666666533
No 450
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=55.70 E-value=19 Score=37.76 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=20.8
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~ 74 (723)
++.+++-++|+|||...-+++....
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCC
Confidence 7889999999999998877766553
No 451
>PRK06921 hypothetical protein; Provisional
Probab=55.54 E-value=17 Score=36.83 Aligned_cols=26 Identities=23% Similarity=0.059 Sum_probs=22.1
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCcc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
.+.+|.-++|+|||..+.+++.....
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 67889999999999999888876654
No 452
>PRK13766 Hef nuclease; Provisional
Probab=55.22 E-value=1.9e+02 Score=34.45 Aligned_cols=114 Identities=10% Similarity=-0.001 Sum_probs=69.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhC-C---CeEEEeecCCCHHHHHHHHHhhcCCCCceE
Q 004925 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS-G---VNCVQLVGSMSIPARDAAINRFTEDPDCKI 624 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~-g---~~~~~i~g~~~~~~r~~~i~~F~~~~~~~v 624 (723)
.+++|.....-.+...+ ..++.++||.+.....+......++.. + .++..++|+.+..+|..+.. +..|
T Consensus 38 tG~GKT~~a~~~i~~~l-~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~------~~~i 110 (773)
T PRK13766 38 TGLGKTAIALLVIAERL-HKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE------KAKV 110 (773)
T ss_pred CCccHHHHHHHHHHHHH-HhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh------CCCE
Confidence 56778875555555554 346679999999887775555555543 3 47888999998877755443 2456
Q ss_pred EEEecCCCc-----ccccccccCEEEEECCCCCh-hhHHHHHHhhhhcCCc
Q 004925 625 FLMSLKAGG-----VALNLTVASHVFLMDPWWNP-AVEQQAQDRIHRIGQY 669 (723)
Q Consensus 625 ll~s~~~~~-----eGlnL~~a~~vI~~d~~wn~-~~~~Q~iGRi~R~Gq~ 669 (723)
+++++.... .-+++...+.+|+=+.+-.. ..-.-.+.+..|....
T Consensus 111 iv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~ 161 (773)
T PRK13766 111 IVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAK 161 (773)
T ss_pred EEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCC
Confidence 777765442 23456667777776665321 1122234555554444
No 453
>PRK10824 glutaredoxin-4; Provisional
Probab=54.37 E-value=71 Score=27.66 Aligned_cols=71 Identities=11% Similarity=0.110 Sum_probs=42.0
Q ss_pred HHHHHHHhhcCCceEEEEccc------HhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcC-CCCceEEEEecCC
Q 004925 559 EEIRFMVERDGSAKGIVFSQF------TSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE-DPDCKIFLMSLKA 631 (723)
Q Consensus 559 ~~l~~~~~~~~~~KvIIF~~~------~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~-~~~~~vll~s~~~ 631 (723)
+.|++.+.. .+|+||+.. =..-....+.|...|+.+..++=....+. +..+.++.. ..-++|+|-...+
T Consensus 6 ~~v~~~I~~---~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~-~~~l~~~sg~~TVPQIFI~G~~I 81 (115)
T PRK10824 6 EKIQRQIAE---NPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDI-RAELPKYANWPTFPQLWVDGELV 81 (115)
T ss_pred HHHHHHHhc---CCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHH-HHHHHHHhCCCCCCeEEECCEEE
Confidence 444444432 499999884 23566777888888877665554334343 344555543 3457777755555
Q ss_pred Cc
Q 004925 632 GG 633 (723)
Q Consensus 632 ~~ 633 (723)
||
T Consensus 82 GG 83 (115)
T PRK10824 82 GG 83 (115)
T ss_pred cC
Confidence 43
No 454
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=54.36 E-value=3.5 Score=43.74 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=16.7
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~ 74 (723)
|++|+ .+.|+|||..+-.++....
T Consensus 171 R~lIv-gppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 171 RGLIV-APPKAGKTVLLQNIANSIT 194 (416)
T ss_pred eEEEe-CCCCCChhHHHHHHHHHHH
Confidence 55555 5699999987766555443
No 455
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=54.27 E-value=6.5 Score=29.18 Aligned_cols=45 Identities=24% Similarity=0.554 Sum_probs=31.5
Q ss_pred cccccccccccCCCCCccc-ccCCccchhhhhhhhcCcCCCCCCCC
Q 004925 464 HVQQVCGLCNDLADDPVVT-NCGHAFCKACLFDSSASKFVAKCPTC 508 (723)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (723)
.....|++......+|+.. .|+|+|..+.+.+.........||..
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~ 54 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVA 54 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCC
Confidence 3456789999999999875 99999999999999977788888873
No 456
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=53.97 E-value=17 Score=36.64 Aligned_cols=39 Identities=26% Similarity=0.234 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhc
Q 004925 33 YQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 33 ~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
-|+.......+......-+++|..++|+|||..|- +++.
T Consensus 36 ~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~-IIA~ 74 (332)
T COG2255 36 EQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAH-IIAN 74 (332)
T ss_pred HHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHH-HHHH
Confidence 35555555555555666888999999999999884 4443
No 457
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=53.63 E-value=2.1e+02 Score=27.41 Aligned_cols=100 Identities=10% Similarity=0.043 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHh----hcCCceEEEEcccHhH----HHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceE
Q 004925 553 KIEALREEIRFMVE----RDGSAKGIVFSQFTSF----LDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKI 624 (723)
Q Consensus 553 Kl~~l~~~l~~~~~----~~~~~KvIIF~~~~~~----~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~v 624 (723)
-+...+..+..... .....|+|++|-.-+. ...+...|+.+|+.+..+....+.++-.+.+.+.+. .+
T Consensus 63 ~~~~~l~~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~p----d~ 138 (197)
T TIGR02370 63 AMLAGIKVLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKP----LM 138 (197)
T ss_pred HHHHHHHHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCC----CE
Confidence 44555555555443 1223578888765433 678899999999999999888888888888877754 34
Q ss_pred EEEecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEE
Q 004925 625 FLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRI 674 (723)
Q Consensus 625 ll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v 674 (723)
+.+|... +-+.....+.+..+.+.|....+.|
T Consensus 139 v~lS~~~------------------~~~~~~~~~~i~~l~~~~~~~~v~i 170 (197)
T TIGR02370 139 LTGSALM------------------TTTMYGQKDINDKLKEEGYRDSVKF 170 (197)
T ss_pred EEEcccc------------------ccCHHHHHHHHHHHHHcCCCCCCEE
Confidence 4444211 1234456677777777766555544
No 458
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=53.47 E-value=19 Score=37.45 Aligned_cols=44 Identities=23% Similarity=0.123 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHHHHhcc-----------CCCCCCcccCCCCCcHHHHHHHHHhc
Q 004925 29 PLLRYQKEWLAWALKQEE-----------SAIRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~-----------~~~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
.=..-|.+-+.-.....- ...+|.||-.++|+|||+.|=|++..
T Consensus 154 GGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~ 208 (406)
T COG1222 154 GGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ 208 (406)
T ss_pred cCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 345667766655544322 34699999999999999998777654
No 459
>PRK05973 replicative DNA helicase; Provisional
Probab=53.05 E-value=12 Score=37.22 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=19.4
Q ss_pred cccCCCCCcHHHHHHHHHhcCcc
Q 004925 53 ILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 53 iLad~~GlGKT~~al~~i~~~~~ 75 (723)
+|+..+|+|||..++.++.....
T Consensus 68 LIaG~PG~GKT~lalqfa~~~a~ 90 (237)
T PRK05973 68 LLGARPGHGKTLLGLELAVEAMK 90 (237)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHh
Confidence 78999999999999988776543
No 460
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=52.43 E-value=17 Score=39.15 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=20.9
Q ss_pred CCCCCcccCCCCCcHHHHHHHHHhc
Q 004925 48 AIRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 48 ~~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
..+|.+|.-++|+|||..|-+++..
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHH
Confidence 3478899999999999998777654
No 461
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=51.97 E-value=9.5 Score=43.97 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=21.7
Q ss_pred CCCCCCcccCCCCCcHHHHHHHHHhc
Q 004925 47 SAIRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 47 ~~~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
.-.+|+||.-++|+|||+.|-|++-.
T Consensus 342 KiPkGvLL~GPPGTGKTLLAKAiAGE 367 (774)
T KOG0731|consen 342 KIPKGVLLVGPPGTGKTLLAKAIAGE 367 (774)
T ss_pred cCcCceEEECCCCCcHHHHHHHHhcc
Confidence 34699999999999999998776643
No 462
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=51.88 E-value=16 Score=35.67 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=17.9
Q ss_pred CCCCCcccCCCCCcHHHHHHHHHhc
Q 004925 48 AIRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 48 ~~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
...+.|+..++|+|||..|-.++..
T Consensus 49 ~l~h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 49 ALDHMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp ---EEEEESSTTSSHHHHHHHHHHH
T ss_pred CcceEEEECCCccchhHHHHHHHhc
Confidence 3467899999999999988544443
No 463
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=51.46 E-value=17 Score=39.21 Aligned_cols=25 Identities=36% Similarity=0.383 Sum_probs=20.8
Q ss_pred CCCCCcccCCCCCcHHHHHHHHHhc
Q 004925 48 AIRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 48 ~~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
..+|.+|..++|+|||..+=+++..
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3488999999999999998776653
No 464
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=51.39 E-value=19 Score=40.98 Aligned_cols=44 Identities=16% Similarity=0.088 Sum_probs=32.3
Q ss_pred ccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 27 ITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 27 ~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
...+.|.|+..+..++.... +-.+++-++|+|||.+..+++...
T Consensus 297 ~lg~~~~~~~~l~~~~~~~~---Glilv~G~tGSGKTTtl~a~l~~~ 340 (564)
T TIGR02538 297 KLGFEPDQKALFLEAIHKPQ---GMVLVTGPTGSGKTVSLYTALNIL 340 (564)
T ss_pred HcCCCHHHHHHHHHHHHhcC---CeEEEECCCCCCHHHHHHHHHHhh
Confidence 34677888888887765421 334689999999999987777654
No 465
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=50.62 E-value=14 Score=36.29 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=31.8
Q ss_pred CcccCCCCCcHHHHHHHHHhcCccc-cCCCCccCCCCCCCCCCCCCCceEEEechhhHHHHHHHHHhh
Q 004925 52 GILADEMGMGKTIQAIALVLAKREI-RGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRF 118 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~~qW~~ei~~~ 118 (723)
.++.-++|+|||..++-++...... + .+++.|.-..-..+..+.+..+
T Consensus 22 ~li~G~~GsGKT~l~~q~l~~~~~~~g-------------------e~vlyvs~ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 22 VLISGPPGSGKTTLALQFLYNGLKNFG-------------------EKVLYVSFEEPPEELIENMKSF 70 (226)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHHT---------------------EEEEESSS-HHHHHHHHHTT
T ss_pred EEEEeCCCCCcHHHHHHHHHHhhhhcC-------------------CcEEEEEecCCHHHHHHHHHHc
Confidence 3778899999999999888765554 3 3667777544445555555544
No 466
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=50.41 E-value=14 Score=38.58 Aligned_cols=49 Identities=22% Similarity=0.372 Sum_probs=35.2
Q ss_pred CCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hhhHHHHHHHHHhhc
Q 004925 48 AIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAAVTQWVSEINRFT 119 (723)
Q Consensus 48 ~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~l~~qW~~ei~~~~ 119 (723)
..+|.+|..++|+|||+.|-++.... +...|=+- ..+...|..|=.+.+
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akea-----------------------ga~fInv~~s~lt~KWfgE~eKlv 175 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEA-----------------------GANFINVSVSNLTSKWFGEAQKLV 175 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHc-----------------------CCCcceeeccccchhhHHHHHHHH
Confidence 44899999999999999998777643 23344344 446678888776664
No 467
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=50.36 E-value=19 Score=39.20 Aligned_cols=34 Identities=29% Similarity=0.228 Sum_probs=24.9
Q ss_pred HHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 39 AWALKQEESAIRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 39 ~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
..++.....+ ++.||...+|+|||..|-.+....
T Consensus 185 e~l~~~L~~~-~~iil~GppGtGKT~lA~~la~~l 218 (459)
T PRK11331 185 ETILKRLTIK-KNIILQGPPGVGKTFVARRLAYLL 218 (459)
T ss_pred HHHHHHHhcC-CCEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444444 889999999999999997766554
No 468
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=50.02 E-value=18 Score=37.97 Aligned_cols=46 Identities=22% Similarity=0.128 Sum_probs=34.9
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCC-cccCCCCCcHHHHHHHHHhcC
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGG-ILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~-iLad~~GlGKT~~al~~i~~~ 73 (723)
..-|.+|..-+.-++-......... +|-...|+|||.+.-.++...
T Consensus 8 v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~ 54 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL 54 (438)
T ss_pred ccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc
Confidence 3668899998888776554433444 788899999999988877755
No 469
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=49.59 E-value=3.5 Score=49.80 Aligned_cols=93 Identities=16% Similarity=0.114 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 632 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~ 632 (723)
+...+.+.+... . +++|+-...+...+...+. ..+.++..+...++.+|... | .....
T Consensus 432 ~~~~~~~~~~~~----~---~~~~~v~itty~~l~~~~~--------~~~~l~~~~~~~~v~DEa~~------i-kn~~s 489 (866)
T COG0553 432 KREALRDLLKLH----L---VIIFDVVITTYELLRRFLV--------DHGGLKKIEWDRVVLDEAHR------I-KNDQS 489 (866)
T ss_pred HHHHHHHHhhhc----c---cceeeEEechHHHHHHhhh--------hHHHHhhceeeeeehhhHHH------H-hhhhh
Confidence 455666655432 1 6888888888888877541 11222222333333333322 3 33777
Q ss_pred cccccccccCEEEEECCCCChhhHHHHHHhhhhcCCc
Q 004925 633 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQY 669 (723)
Q Consensus 633 ~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~ 669 (723)
.+|.+++.++..+.++.+|+| ++|++++.|++++.
T Consensus 490 ~~~~~l~~~~~~~~~~LtgTP--len~l~eL~sl~~~ 524 (866)
T COG0553 490 SEGKALQFLKALNRLDLTGTP--LENRLGELWSLLQE 524 (866)
T ss_pred HHHHHHHHHhhcceeeCCCCh--HhhhHHHHHHHHHH
Confidence 899999999999999999999 79999999999995
No 470
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=49.44 E-value=96 Score=28.32 Aligned_cols=93 Identities=16% Similarity=0.121 Sum_probs=60.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhC----CCeEEEeecCCCHH-HHHHHHHhhcCCCCce
Q 004925 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS----GVNCVQLVGSMSIP-ARDAAINRFTEDPDCK 623 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~----g~~~~~i~g~~~~~-~r~~~i~~F~~~~~~~ 623 (723)
.+++|-....-.+-..+......++||.++....+..+...+... ++.+..++|+.+.. +....+ ..++.
T Consensus 23 tGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 97 (169)
T PF00270_consen 23 TGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL-----SNQAD 97 (169)
T ss_dssp TTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH-----HTTSS
T ss_pred CCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccccccccccccccc-----ccccc
Confidence 678888877766655443444459999999998877776666554 56788889988744 332333 22567
Q ss_pred EEEEecCCCcccc-----cccccCEEEE
Q 004925 624 IFLMSLKAGGVAL-----NLTVASHVFL 646 (723)
Q Consensus 624 vll~s~~~~~eGl-----nL~~a~~vI~ 646 (723)
+++++...+..-+ ++...+++|+
T Consensus 98 ilv~T~~~l~~~~~~~~~~~~~~~~iVi 125 (169)
T PF00270_consen 98 ILVTTPEQLLDLISNGKINISRLSLIVI 125 (169)
T ss_dssp EEEEEHHHHHHHHHTTSSTGTTESEEEE
T ss_pred ccccCcchhhccccccccccccceeecc
Confidence 7888876655433 4555555554
No 471
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=49.26 E-value=49 Score=31.46 Aligned_cols=100 Identities=12% Similarity=0.033 Sum_probs=53.2
Q ss_pred CCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCC------CCCCCCCCCCCceEE-----Ee--chhhHHHHHHHHHh
Q 004925 51 GGILADEMGMGKTIQAIALVLAKREIRGTIGELDAS------SSSSTGLLGIKATLV-----IC--PVAAVTQWVSEINR 117 (723)
Q Consensus 51 g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~LI-----v~--P~~l~~qW~~ei~~ 117 (723)
..-++.++|+|||.....++..+...+. .+-+... ..+....++ -+++- .| |.++...-.+++..
T Consensus 15 ~i~v~Gp~GSGKTaLie~~~~~L~~~~~-~aVI~~Di~t~~Da~~l~~~~g-~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 15 RIGVGGPPGSGKTALIEKTLRALKDEYK-IAVITGDIYTKEDADRLRKLPG-EPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred EEEecCCCCcCHHHHHHHHHHHHHhhCC-eEEEeceeechhhHHHHHhCCC-CeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 4567899999999887777776554321 1100000 000000000 11111 23 77888899999999
Q ss_pred hcCCCCcEEEEEeCCCCCCCccccCC-CCEEEechh
Q 004925 118 FTSVGSTKVLIYHGSNRERSAKQFSE-FDFVITTYS 152 (723)
Q Consensus 118 ~~~~~~~~~~~~~g~~~~~~~~~~~~-~~ivi~t~~ 152 (723)
|++..++-++.--|....+....+.+ ..|++.+-.
T Consensus 93 ~~~~~Dll~iEs~GNL~~~~sp~L~d~~~v~Vidvt 128 (202)
T COG0378 93 DFPDLDLLFIESVGNLVCPFSPDLGDHLRVVVIDVT 128 (202)
T ss_pred cCCcCCEEEEecCcceecccCcchhhceEEEEEECC
Confidence 98853333333344344445555555 666666554
No 472
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=49.13 E-value=27 Score=28.35 Aligned_cols=38 Identities=16% Similarity=0.113 Sum_probs=31.3
Q ss_pred cCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCC
Q 004925 568 DGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMS 605 (723)
Q Consensus 568 ~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~ 605 (723)
.++.++|+||............|+..|+.+..+.|++.
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 35578999998866677888899999998899999874
No 473
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=48.93 E-value=66 Score=35.59 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=16.9
Q ss_pred cccCCCCCcHHHHHHHHHhcC
Q 004925 53 ILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 53 iLad~~GlGKT~~al~~i~~~ 73 (723)
+|.-.+|+|||.++..++..+
T Consensus 260 ~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 260 ALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred EEECCCCccHHHHHHHHHHHH
Confidence 467799999999987777654
No 474
>PF13173 AAA_14: AAA domain
Probab=48.25 E-value=16 Score=32.21 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=24.7
Q ss_pred eEEEEeeccccccCCCcHHHHHHHhh---hcCceEEEeCcCC
Q 004925 244 WERIILDEAHFIKDRRSNTAKAVLAL---ESSYKWALSGTPL 282 (723)
Q Consensus 244 ~~~vIiDEaH~~kn~~s~~~~~l~~l---~~~~~l~LTaTP~ 282 (723)
..+|++||+|++.+ ....++.+ .....+++||+-.
T Consensus 62 ~~~i~iDEiq~~~~----~~~~lk~l~d~~~~~~ii~tgS~~ 99 (128)
T PF13173_consen 62 KKYIFIDEIQYLPD----WEDALKFLVDNGPNIKIILTGSSS 99 (128)
T ss_pred CcEEEEehhhhhcc----HHHHHHHHHHhccCceEEEEccch
Confidence 37899999999975 33444444 2356899999753
No 475
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=47.92 E-value=15 Score=34.55 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=31.2
Q ss_pred eeeEEEEeeccccccCCCcH----HHHHHHhhhcCceEEEeCcCCCCchhhHHHHHHH
Q 004925 242 LKWERIILDEAHFIKDRRSN----TAKAVLALESSYKWALSGTPLQNRVGELYSLVRF 295 (723)
Q Consensus 242 ~~~~~vIiDEaH~~kn~~s~----~~~~l~~l~~~~~l~LTaTP~~n~~~dl~~~l~l 295 (723)
-.||+||+||.-.+-+..-. ....+..-+..--++|||--. +.+|..+..+
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~---p~~Lie~AD~ 168 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEM---PESLLAIADQ 168 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCC---CHHHHHhCCe
Confidence 36899999999887665422 223333334445799999644 4555544443
No 476
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=47.57 E-value=10 Score=47.39 Aligned_cols=95 Identities=13% Similarity=0.125 Sum_probs=71.1
Q ss_pred eEEEEcccHhHHHHHHHHHHhC-CCeEEEeecCCCHH-----------HHHHHHHhhcCCCCceEEEEecCCCccccccc
Q 004925 572 KGIVFSQFTSFLDLINYSLHKS-GVNCVQLVGSMSIP-----------ARDAAINRFTEDPDCKIFLMSLKAGGVALNLT 639 (723)
Q Consensus 572 KvIIF~~~~~~~~~l~~~L~~~-g~~~~~i~g~~~~~-----------~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~ 639 (723)
-.|||++.+.++-.+...+... -..+..+.|.+... .+..++..|... .+++|+ .+.+.-||+|+.
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~-~ln~L~-~~~~~~e~~d~~ 371 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFH-ELNLLI-ATSVLEEGVDVP 371 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhh-hhhHHH-HHHHHHhhcchh
Confidence 3489999998877777777664 33334455554321 355677888765 677555 558889999999
Q ss_pred ccCEEEEECCCCChhhHHHHHHhhhhcCC
Q 004925 640 VASHVFLMDPWWNPAVEQQAQDRIHRIGQ 668 (723)
Q Consensus 640 ~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq 668 (723)
.|+.++.++.+-....+.|..||..+.+.
T Consensus 372 ~~~~~~~~~~~~~~~~~vq~~~r~~~~~~ 400 (1606)
T KOG0701|consen 372 KCNLVVLFDAPTYYRSYVQKKGRARAADS 400 (1606)
T ss_pred hhhhheeccCcchHHHHHHhhcccccchh
Confidence 99999999999999999999999887654
No 477
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=47.55 E-value=21 Score=38.09 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=20.8
Q ss_pred CCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 49 IRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 49 ~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
.+|.+|..++|+|||..|-+++...
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC
Confidence 4788999999999999987776643
No 478
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=47.54 E-value=17 Score=34.92 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=18.2
Q ss_pred CcccCCCCCcHHHHHHHHHhcCc
Q 004925 52 GILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~ 74 (723)
.+++-++|+|||.+.-+++....
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 46789999999999877666543
No 479
>PRK13531 regulatory ATPase RavA; Provisional
Probab=47.51 E-value=19 Score=39.51 Aligned_cols=37 Identities=22% Similarity=0.154 Sum_probs=26.1
Q ss_pred HHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 36 EWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 36 ~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
+.+.-++.....+ ++.+|-+++|+|||..|-++....
T Consensus 27 ~vI~lll~aalag-~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 27 HAIRLCLLAALSG-ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred HHHHHHHHHHccC-CCEEEECCCChhHHHHHHHHHHHh
Confidence 3344444333344 788999999999999998777654
No 480
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=47.15 E-value=25 Score=37.64 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=19.2
Q ss_pred CcccCCCCCcHHHHHHHHHhcCcc
Q 004925 52 GILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
.+++-=.|+|||.++--++.++..
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk 126 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKK 126 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHH
Confidence 456777899999999777777766
No 481
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=47.11 E-value=21 Score=40.14 Aligned_cols=49 Identities=27% Similarity=0.297 Sum_probs=37.2
Q ss_pred CCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hhhHHHHHHHHHhh
Q 004925 47 SAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAAVTQWVSEINRF 118 (723)
Q Consensus 47 ~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~l~~qW~~ei~~~ 118 (723)
+..+|.|+-.++|+|||+.|=+++... +..++-++ +-|+..|..|=.+.
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~-----------------------~~nFlsvkgpEL~sk~vGeSEr~ 515 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEA-----------------------GMNFLSVKGPELFSKYVGESERA 515 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhh-----------------------cCCeeeccCHHHHHHhcCchHHH
Confidence 456999999999999999987766543 45577777 66888888775554
No 482
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=46.75 E-value=33 Score=36.63 Aligned_cols=61 Identities=21% Similarity=0.207 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHHhccC-CCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhhH
Q 004925 30 LLRYQKEWLAWALKQEES-AIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAV 108 (723)
Q Consensus 30 L~p~Q~~~~~~~~~~~~~-~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~ 108 (723)
|-+-|+.++..+++.... ......|.-.-|+|||+..=++....... . +.+++++|..+.
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~-~------------------~~~~~~a~tg~A 62 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR-G------------------KKVLVTAPTGIA 62 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc-c------------------ceEEEecchHHH
Confidence 667899998888655532 22555788899999999876666655432 1 588999998765
Q ss_pred H
Q 004925 109 T 109 (723)
Q Consensus 109 ~ 109 (723)
.
T Consensus 63 A 63 (364)
T PF05970_consen 63 A 63 (364)
T ss_pred H
Confidence 3
No 483
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=46.61 E-value=12 Score=45.16 Aligned_cols=192 Identities=31% Similarity=0.461 Sum_probs=158.4
Q ss_pred cccccccccCCC-CCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcccccccccCCCCCCccccccCCccccchhhcc
Q 004925 466 QQVCGLCNDLAD-DPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQ 544 (723)
Q Consensus 466 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (723)
...|++|.+... -..+..|||..|-.|..--.. ..-.||.|...
T Consensus 1153 ~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~--~~s~~~~~ksi--------------------------------- 1197 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGGIAGCGHEPCCRCDELWLY--ASSRCPICKSI--------------------------------- 1197 (1394)
T ss_pred ccchHHHHHHHHhcCCeeeechhHhhhHHHHHHH--HhccCcchhhh---------------------------------
Confidence 347999998888 678999999999999843332 33445555311
Q ss_pred ccccCcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceE
Q 004925 545 LDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKI 624 (723)
Q Consensus 545 ~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~v 624 (723)
...-++|+..+...+....-+++-+|+|+|+++....+++...+..++++.....+ + ++....+..|.. +.+
T Consensus 1198 --~~dfg~kI~~v~~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~-t--~d~~dc~~~fk~---I~c 1269 (1394)
T KOG0298|consen 1198 --KGDFGTKIDSVVIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE-T--EDFDDCIICFKS---IDC 1269 (1394)
T ss_pred --hhhhccCchhHHHHHHHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC-C--cchhhhhhhccc---ceE
Confidence 11336888888877777655677799999999999999999999999998666544 2 566788899964 889
Q ss_pred EEEecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHhhc
Q 004925 625 FLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEG 700 (723)
Q Consensus 625 ll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~~~~ 700 (723)
|++..+.++-|+||-.|.||++.+|.-||+...||+||++|+||++++.||+++..+|+||.|+.....|......
T Consensus 1270 lll~~~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~~ee~l~~ 1345 (1394)
T KOG0298|consen 1270 LLLFVSKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITSKEETLTK 1345 (1394)
T ss_pred EEEEeccCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhhhHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999987777554443
No 484
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=46.54 E-value=78 Score=29.51 Aligned_cols=51 Identities=18% Similarity=0.114 Sum_probs=31.4
Q ss_pred HhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhhHHHHH
Q 004925 43 KQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWV 112 (723)
Q Consensus 43 ~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~~qW~ 112 (723)
++........+|.-++|+||+..|=++-....+. .+|.+.|--..+-..+.
T Consensus 16 ~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~-------------------~~pfi~vnc~~~~~~~~ 66 (168)
T PF00158_consen 16 KRAASSDLPVLITGETGTGKELLARAIHNNSPRK-------------------NGPFISVNCAALPEELL 66 (168)
T ss_dssp HHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTT-------------------TS-EEEEETTTS-HHHH
T ss_pred HHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcc-------------------cCCeEEEehhhhhcchh
Confidence 3333333778999999999999986665533221 15777777777754443
No 485
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=46.49 E-value=82 Score=32.74 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=20.9
Q ss_pred CCC-cccCCCCCcHHHHHHHHHhcCcc
Q 004925 50 RGG-ILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 50 ~g~-iLad~~GlGKT~~al~~i~~~~~ 75 (723)
.++ ++..+-|.|||..|..++..+..
T Consensus 26 ~ha~Lf~G~~G~Gk~~la~~~a~~l~c 52 (313)
T PRK05564 26 SHAHIIVGEDGIGKSLLAKEIALKILG 52 (313)
T ss_pred CceEEeECCCCCCHHHHHHHHHHHHcC
Confidence 344 78999999999999888876543
No 486
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=46.47 E-value=54 Score=36.46 Aligned_cols=51 Identities=22% Similarity=0.247 Sum_probs=30.2
Q ss_pred eeEEEEeeccccccCCCcHHHHH-HHhh--hcCceEE-EeCcCCCCchhhHHHHHHHh
Q 004925 243 KWERIILDEAHFIKDRRSNTAKA-VLAL--ESSYKWA-LSGTPLQNRVGELYSLVRFL 296 (723)
Q Consensus 243 ~~~~vIiDEaH~~kn~~s~~~~~-l~~l--~~~~~l~-LTaTP~~n~~~dl~~~l~lL 296 (723)
++...||||+|-+... .+.+ |+.+ +..++.+ |--|=...-|..|.+-+...
T Consensus 119 ryKVyiIDEvHMLS~~---afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f 173 (515)
T COG2812 119 RYKVYIIDEVHMLSKQ---AFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRF 173 (515)
T ss_pred cceEEEEecHHhhhHH---HHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccc
Confidence 6788999999999554 3333 3444 4556655 44444444455555544443
No 487
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=45.99 E-value=17 Score=33.67 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=21.0
Q ss_pred cccCCCCCcHHHHHHHHHhcCcccc
Q 004925 53 ILADEMGMGKTIQAIALVLAKREIR 77 (723)
Q Consensus 53 iLad~~GlGKT~~al~~i~~~~~~~ 77 (723)
|.+-++|.|||.++++++..+.+.+
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~~g 26 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKKAG 26 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHHCC
Confidence 4567899999999999999887654
No 488
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=45.77 E-value=27 Score=34.70 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=20.4
Q ss_pred CCCCcccCCCCCcHHHHHHHHHhc
Q 004925 49 IRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 49 ~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
.++.+.-.++|+|||.+|=+++..
T Consensus 151 PknVLFyGppGTGKTm~Akalane 174 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANE 174 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhcc
Confidence 578899999999999999777654
No 489
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=45.61 E-value=15 Score=37.23 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=21.4
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCcc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
++.+++-++|+|||.++-+++...-.
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred eEEEEECCCccccchHHHHHhhhccc
Confidence 67788999999999999888765544
No 490
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=45.55 E-value=91 Score=25.40 Aligned_cols=55 Identities=11% Similarity=0.114 Sum_probs=34.8
Q ss_pred ceEEEEccc------HhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhc-CCCCceEEE
Q 004925 571 AKGIVFSQF------TSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFT-EDPDCKIFL 626 (723)
Q Consensus 571 ~KvIIF~~~------~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~-~~~~~~vll 626 (723)
.+|+||+.. =..-..+.++|...|+++..++=....+.+. .+.+.. ...-+.|++
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~-~l~~~~g~~tvP~vfi 69 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQ-GLKEYSNWPTFPQLYV 69 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHH-HHHHHhCCCCCCEEEE
Confidence 499999873 3456788889999999988887544443333 333332 232355544
No 491
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=44.91 E-value=50 Score=32.58 Aligned_cols=57 Identities=28% Similarity=0.203 Sum_probs=35.9
Q ss_pred cccCCCCCCCCcc--CChHHHHHHHHHHHHhc-----------cCCCCCCcccCCCCCcHHHHHHHHHhc
Q 004925 16 MTETAEDPPDLIT--PLLRYQKEWLAWALKQE-----------ESAIRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 16 ~~~~~~~p~~~~~--~L~p~Q~~~~~~~~~~~-----------~~~~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
+-.+.+.|.-... .-.+-|++-+....... -...+|.+|-.++|+|||..+=+++..
T Consensus 143 ml~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 143 MLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred ccCCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 3344555655443 33456666554443322 145699999999999999988666643
No 492
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=44.68 E-value=28 Score=41.08 Aligned_cols=69 Identities=14% Similarity=0.051 Sum_probs=44.6
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEech-hh
Q 004925 29 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AA 107 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~-~l 107 (723)
.|-|-|+.++.+. . +..++-...|+|||.+.+.-++++...... ....+|+++-. ..
T Consensus 4 ~Ln~~Q~~av~~~--~-----g~~lV~AgaGSGKT~~l~~ria~Li~~~~i---------------~P~~IL~lTFT~kA 61 (726)
T TIGR01073 4 HLNPEQREAVKTT--E-----GPLLIMAGAGSGKTRVLTHRIAHLIAEKNV---------------APWNILAITFTNKA 61 (726)
T ss_pred ccCHHHHHHHhCC--C-----CCEEEEeCCCCCHHHHHHHHHHHHHHcCCC---------------CHHHeeeeeccHHH
Confidence 5889999988742 1 556777889999999998888877653221 11467777764 33
Q ss_pred HHHHHHHHHhhc
Q 004925 108 VTQWVSEINRFT 119 (723)
Q Consensus 108 ~~qW~~ei~~~~ 119 (723)
...-++-+.+.+
T Consensus 62 A~em~~Rl~~~~ 73 (726)
T TIGR01073 62 AREMKERVEKLL 73 (726)
T ss_pred HHHHHHHHHHHh
Confidence 344444444443
No 493
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=44.61 E-value=50 Score=27.46 Aligned_cols=38 Identities=16% Similarity=0.113 Sum_probs=28.9
Q ss_pred cCCceEEEEcccHhHHHHHHHHHHhCCCe-EEEeecCCC
Q 004925 568 DGSAKGIVFSQFTSFLDLINYSLHKSGVN-CVQLVGSMS 605 (723)
Q Consensus 568 ~~~~KvIIF~~~~~~~~~l~~~L~~~g~~-~~~i~g~~~ 605 (723)
.++.++||||+.-........+|...|+. +..+.|++.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 45678999998765556667788889995 777888763
No 494
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=44.59 E-value=14 Score=37.43 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHhcCccc
Q 004925 57 EMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 57 ~~GlGKT~~al~~i~~~~~~ 76 (723)
-=|.|||.+++.++..+...
T Consensus 8 KGGVGKTT~~~nLA~~La~~ 27 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKL 27 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhC
Confidence 56999999998877766543
No 495
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=44.59 E-value=40 Score=33.05 Aligned_cols=24 Identities=33% Similarity=0.196 Sum_probs=20.0
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcC
Q 004925 50 RGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
+..+|..+.|+|||..+-++....
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999887776643
No 496
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=44.57 E-value=68 Score=33.89 Aligned_cols=17 Identities=35% Similarity=0.630 Sum_probs=12.2
Q ss_pred eeeEEEEeeccccccCC
Q 004925 242 LKWERIILDEAHFIKDR 258 (723)
Q Consensus 242 ~~~~~vIiDEaH~~kn~ 258 (723)
..++.||+||+-.....
T Consensus 96 ~~~~~i~iDE~~~~~~~ 112 (384)
T PF03237_consen 96 FEYDLIIIDEAAKVPDD 112 (384)
T ss_dssp S--SEEEEESGGGSTTH
T ss_pred cccceeeeeecccCchH
Confidence 46789999998888554
No 497
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=44.50 E-value=50 Score=39.66 Aligned_cols=185 Identities=17% Similarity=0.158 Sum_probs=111.2
Q ss_pred hHHHHHHHHHHHHhccCC---------------------------------CCCCcccCCCCCcHHHHHHHHHhcCcccc
Q 004925 31 LRYQKEWLAWALKQEESA---------------------------------IRGGILADEMGMGKTIQAIALVLAKREIR 77 (723)
Q Consensus 31 ~p~Q~~~~~~~~~~~~~~---------------------------------~~g~iLad~~GlGKT~~al~~i~~~~~~~ 77 (723)
.|||.+++..++...... ..+..+.+++|+|||.+++..|..+....
T Consensus 8 l~hQ~~av~ai~~~F~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~M~TGtGKT~~~~~~i~~l~~~~ 87 (986)
T PRK15483 8 LPHQEQALAAILAAFTGIDIASADPNHYANPLIKLRYENGIPGRSRTRIDDKANIDIKMETGTGKTYVYTRLMYELHQKY 87 (986)
T ss_pred ChhHHHHHHHHHHHhcCCCccCCccccccCcccccchhhccccccccccCccceEEEEeCCCCCHHHHHHHHHHHHHHHc
Confidence 789999888887765421 13667899999999999999888776654
Q ss_pred CCCCccCCCCCCCCCCCCCCceEEEech-hhHHHHHHHH---------HhhcCCCCcEEEEEeCCCCCCC-----ccc--
Q 004925 78 GTIGELDASSSSSTGLLGIKATLVICPV-AAVTQWVSEI---------NRFTSVGSTKVLIYHGSNRERS-----AKQ-- 140 (723)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~LIv~P~-~l~~qW~~ei---------~~~~~~~~~~~~~~~g~~~~~~-----~~~-- 140 (723)
+. ..+|||||. ++.....+-+ ...++...+.+.+|.+.++... ...
T Consensus 88 ~~-----------------~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~ 150 (986)
T PRK15483 88 GL-----------------FKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKSGRKNFPAQLS 150 (986)
T ss_pred CC-----------------cEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccccccccChHHHH
Confidence 42 689999995 5554444332 2333333466677775442111 111
Q ss_pred ---------cCCCCEEEechhhhHHhhhhccCCCcccccccCccchhhhhhhhhhhc-cCCcchhhhhhhHHHHhhhccc
Q 004925 141 ---------FSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHLKYF-CGPSAVRTEKQSKQEKKKMKSS 210 (723)
Q Consensus 141 ---------~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 210 (723)
-....|.|+|.+.|.+...... -+ ...+ .+.
T Consensus 151 ~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~-----------------~~---D~~l~~g~------------------- 191 (986)
T PRK15483 151 NFVKASRQNSNTIHVLLINAGMLNSASMTRD-----------------DY---DQTLLGGF------------------- 191 (986)
T ss_pred HHHhccccCCCceEEEEEehHHhcccccccc-----------------hh---hhhhccCC-------------------
Confidence 0135688999998854311000 00 0000 000
Q ss_pred cccCCCCCCCCCCcCCCCCCCCCCCCCCccc--eeeEEEEeeccccccCCCcHHHHHHHhhhcCceEEEeCcCCCC----
Q 004925 211 VYEGYPGKKNGKKSSVGGVQKPSGGKSPLHS--LKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQN---- 284 (723)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vIiDEaH~~kn~~s~~~~~l~~l~~~~~l~LTaTP~~n---- 284 (723)
..++.. -.=..||+||+|++... .+.+.++..+++-+.+..|||--..
T Consensus 192 -------------------------~~p~~~i~~~~PivIiDEPh~~~~~-~k~~~~i~~lnpl~~lrysAT~~~~~~~~ 245 (986)
T PRK15483 192 -------------------------TSPVDALAATRPVVIIDEPHRFPRD-NKFYQAIEALKPQMIIRFGATFPDITEGK 245 (986)
T ss_pred -------------------------CChHHHHHhCCCEEEEECCCCCCcc-hHHHHHHHhcCcccEEEEeeecCCccccc
Confidence 001111 11247999999999663 4577889999999999999996431
Q ss_pred -----chhhHHHHHHHhc
Q 004925 285 -----RVGELYSLVRFLQ 297 (723)
Q Consensus 285 -----~~~dl~~~l~lL~ 297 (723)
...|.++++.-|+
T Consensus 246 g~~~~~~~d~~NlvY~Ld 263 (986)
T PRK15483 246 GKNKCTRKDYYNLQFDLN 263 (986)
T ss_pred cccccccccccCceeecC
Confidence 1224566666664
No 498
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=44.07 E-value=15 Score=36.98 Aligned_cols=26 Identities=38% Similarity=0.409 Sum_probs=21.6
Q ss_pred CCCCCCcccCCCCCcHHHHHHHHHhc
Q 004925 47 SAIRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 47 ~~~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
...+|.||..++|+|||+.|=+++..
T Consensus 217 kpPKGVIlyG~PGTGKTLLAKAVANq 242 (440)
T KOG0726|consen 217 KPPKGVILYGEPGTGKTLLAKAVANQ 242 (440)
T ss_pred CCCCeeEEeCCCCCchhHHHHHHhcc
Confidence 34589999999999999998776653
No 499
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=43.92 E-value=33 Score=32.53 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=27.9
Q ss_pred ChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 30 LLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 30 L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
+-+.|...+.++++. + ...+++-++|+|||...-+++...
T Consensus 10 ~~~~~~~~l~~~v~~---g-~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 10 FSPLQAAYLWLAVEA---R-KNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCHHHHHHHHHHHhC---C-CEEEEECCCCCCHHHHHHHHHhhc
Confidence 345677777766554 2 566889999999998876655443
No 500
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=43.76 E-value=30 Score=33.88 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=32.0
Q ss_pred cccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhhHHHHHHHHHhh
Q 004925 53 ILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRF 118 (723)
Q Consensus 53 iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~~qW~~ei~~~ 118 (723)
+++.++|+|||..++.++......+ .+++++.-..-..+-.+.+..+
T Consensus 20 li~G~~G~GKt~~~~~~~~~~~~~g-------------------~~~~y~s~e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 20 VVIGEYGTGKTTFSLQFLYQGLKNG-------------------EKAMYISLEEREERILGYAKSK 66 (224)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCC-------------------CeEEEEECCCCHHHHHHHHHHc
Confidence 6788999999999988876544332 4778887755455545554443
Done!