Query 004925
Match_columns 723
No_of_seqs 148 out of 1796
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 09:59:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004925.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004925hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z3i_X Similar to RAD54-like; 100.0 5.5E-67 1.9E-71 597.8 35.5 501 22-722 48-569 (644)
2 3mwy_W Chromo domain-containin 100.0 2.9E-66 9.9E-71 606.7 35.2 477 26-721 233-730 (800)
3 1z63_A Helicase of the SNF2/RA 100.0 3.5E-65 1.2E-69 571.1 37.0 463 23-722 31-494 (500)
4 3dmq_A RNA polymerase-associat 100.0 1E-46 3.5E-51 447.3 27.5 472 22-709 146-643 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 2.5E-41 8.6E-46 376.9 32.6 452 28-699 8-493 (494)
6 1z5z_A Helicase of the SNF2/RA 100.0 1.6E-38 5.6E-43 321.9 22.2 253 367-722 12-265 (271)
7 2fwr_A DNA repair protein RAD2 100.0 2.5E-37 8.5E-42 342.9 19.8 378 26-697 90-470 (472)
8 4a2w_A RIG-I, retinoic acid in 100.0 8.2E-36 2.8E-40 353.6 29.4 148 549-702 610-769 (936)
9 4a2q_A RIG-I, retinoic acid in 100.0 1.1E-35 3.6E-40 349.3 27.1 148 549-702 610-769 (797)
10 4a2p_A RIG-I, retinoic acid in 100.0 1.2E-35 4.2E-40 336.8 26.2 148 549-702 369-528 (556)
11 3tbk_A RIG-I helicase domain; 100.0 2.1E-35 7.4E-40 334.7 25.6 161 549-719 368-540 (555)
12 2oca_A DAR protein, ATP-depend 100.0 2.2E-33 7.5E-38 314.4 27.2 346 27-682 111-459 (510)
13 4gl2_A Interferon-induced heli 100.0 1.1E-32 3.9E-37 320.7 25.5 143 550-698 379-536 (699)
14 2ykg_A Probable ATP-dependent 100.0 3.8E-32 1.3E-36 316.2 27.4 131 550-685 378-520 (696)
15 3h1t_A Type I site-specific re 100.0 3.1E-31 1E-35 301.9 19.9 125 553-678 421-558 (590)
16 1xti_A Probable ATP-dependent 100.0 8.2E-30 2.8E-34 275.5 29.4 135 551-694 235-369 (391)
17 1hv8_A Putative ATP-dependent 100.0 4.9E-29 1.7E-33 266.8 29.5 123 552-683 225-347 (367)
18 1s2m_A Putative ATP-dependent 100.0 8E-29 2.7E-33 268.6 29.2 124 552-683 244-367 (400)
19 2j0s_A ATP-dependent RNA helic 100.0 5.8E-29 2E-33 270.6 26.2 123 553-683 263-385 (410)
20 3pey_A ATP-dependent RNA helic 100.0 4.8E-28 1.6E-32 261.9 30.2 116 553-674 230-351 (395)
21 2z0m_A 337AA long hypothetical 100.0 9.9E-29 3.4E-33 261.2 21.9 117 567-690 217-333 (337)
22 3eiq_A Eukaryotic initiation f 100.0 3.7E-28 1.3E-32 264.6 24.4 121 553-681 267-387 (414)
23 3fht_A ATP-dependent RNA helic 100.0 1.3E-26 4.5E-31 252.1 32.8 134 552-694 252-391 (412)
24 1fuu_A Yeast initiation factor 100.0 5.4E-29 1.8E-33 269.3 13.4 109 569-681 258-366 (394)
25 2db3_A ATP-dependent RNA helic 100.0 1.9E-27 6.6E-32 259.6 25.7 120 551-679 286-405 (434)
26 2i4i_A ATP-dependent RNA helic 100.0 2.2E-27 7.6E-32 258.7 21.1 124 552-682 261-384 (417)
27 1oyw_A RECQ helicase, ATP-depe 99.9 2.6E-26 8.8E-31 255.6 24.4 116 553-674 223-338 (523)
28 3oiy_A Reverse gyrase helicase 99.9 9.3E-26 3.2E-30 245.5 25.2 114 553-678 240-362 (414)
29 2v1x_A ATP-dependent DNA helic 99.9 1.1E-25 3.9E-30 252.8 26.3 118 553-675 253-370 (591)
30 3fho_A ATP-dependent RNA helic 99.9 1.4E-26 4.6E-31 257.9 12.4 117 552-674 343-465 (508)
31 3sqw_A ATP-dependent RNA helic 99.9 5E-25 1.7E-29 249.8 24.3 119 568-692 286-407 (579)
32 2eyq_A TRCF, transcription-rep 99.9 9.5E-25 3.3E-29 262.4 27.0 109 569-681 811-922 (1151)
33 3fmp_B ATP-dependent RNA helic 99.9 2.2E-25 7.5E-30 247.3 18.2 116 553-674 320-441 (479)
34 3i5x_A ATP-dependent RNA helic 99.9 1.2E-24 4E-29 246.5 24.4 119 568-692 337-458 (563)
35 2xgj_A ATP-dependent RNA helic 99.9 2.6E-23 8.7E-28 246.3 32.3 124 553-682 330-500 (1010)
36 1gm5_A RECG; helicase, replica 99.9 8.2E-25 2.8E-29 251.0 10.6 104 569-674 577-692 (780)
37 3hgt_A HDA1 complex subunit 3; 99.9 9E-23 3.1E-27 205.3 20.9 217 382-690 20-246 (328)
38 3l9o_A ATP-dependent RNA helic 99.9 3.2E-22 1.1E-26 238.9 28.0 121 568-690 439-606 (1108)
39 2va8_A SSO2462, SKI2-type heli 99.9 1.4E-21 4.7E-26 227.3 30.0 112 569-682 251-409 (715)
40 4a4z_A Antiviral helicase SKI2 99.9 1.3E-21 4.4E-26 231.8 28.5 133 551-690 321-501 (997)
41 2zj8_A DNA helicase, putative 99.9 8.6E-22 2.9E-26 228.9 25.9 115 569-685 236-391 (720)
42 2p6r_A Afuhel308 helicase; pro 99.9 7.9E-22 2.7E-26 228.5 24.6 115 569-685 241-392 (702)
43 4ddu_A Reverse gyrase; topoiso 99.9 4.8E-21 1.6E-25 228.8 21.6 87 553-651 297-388 (1104)
44 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 1.4E-21 4.8E-26 229.9 16.0 106 570-678 537-706 (1038)
45 1gku_B Reverse gyrase, TOP-RG; 99.9 1.9E-20 6.3E-25 224.0 23.0 119 570-697 275-468 (1054)
46 1rif_A DAR protein, DNA helica 99.8 5E-19 1.7E-23 181.5 12.9 165 28-298 112-278 (282)
47 1t5i_A C_terminal domain of A 99.8 2E-17 6.8E-22 155.8 17.1 136 549-693 14-149 (172)
48 2v6i_A RNA helicase; membrane, 99.7 5.9E-18 2E-22 183.8 14.1 95 570-671 171-282 (431)
49 2hjv_A ATP-dependent RNA helic 99.7 1.5E-17 5.2E-22 155.3 14.5 125 549-681 18-142 (163)
50 3rc3_A ATP-dependent RNA helic 99.7 5.6E-17 1.9E-21 183.3 19.4 105 573-679 323-443 (677)
51 2jgn_A DBX, DDX3, ATP-dependen 99.7 1.2E-17 4.1E-22 159.1 11.8 127 548-681 27-153 (185)
52 2jlq_A Serine protease subunit 99.7 5.5E-17 1.9E-21 177.4 17.4 95 570-671 188-302 (451)
53 1yks_A Genome polyprotein [con 99.7 4.3E-17 1.5E-21 177.4 15.1 94 570-670 177-289 (440)
54 2z83_A Helicase/nucleoside tri 99.7 2.7E-17 9.3E-22 180.1 12.9 104 570-681 190-313 (459)
55 2wv9_A Flavivirin protease NS2 99.7 4.1E-17 1.4E-21 185.0 14.6 96 569-671 409-524 (673)
56 2p6n_A ATP-dependent RNA helic 99.7 2.5E-17 8.6E-22 157.6 10.3 124 549-681 38-161 (191)
57 2xau_A PRE-mRNA-splicing facto 99.7 3.7E-17 1.3E-21 188.9 13.7 112 567-683 300-445 (773)
58 4f92_B U5 small nuclear ribonu 99.7 1.7E-15 5.9E-20 187.5 28.6 115 29-157 79-195 (1724)
59 1fuk_A Eukaryotic initiation f 99.7 8E-17 2.8E-21 150.7 12.6 125 552-684 16-140 (165)
60 1tf5_A Preprotein translocase 99.7 7.5E-16 2.6E-20 173.4 21.5 115 551-671 415-537 (844)
61 2fz4_A DNA repair protein RAD2 99.7 1.2E-16 4E-21 158.8 13.2 142 25-285 89-232 (237)
62 4f92_B U5 small nuclear ribonu 99.7 1.1E-15 3.7E-20 189.3 24.4 85 595-681 1214-1308(1724)
63 1nkt_A Preprotein translocase 99.7 3.8E-15 1.3E-19 167.3 24.9 116 551-672 443-610 (922)
64 2whx_A Serine protease/ntpase/ 99.7 2.7E-16 9.3E-21 177.2 15.6 102 570-679 355-476 (618)
65 1c4o_A DNA nucleotide excision 99.7 1.9E-14 6.6E-19 163.8 30.8 123 553-682 424-551 (664)
66 2rb4_A ATP-dependent RNA helic 99.7 6.2E-16 2.1E-20 146.2 15.2 124 552-683 20-149 (175)
67 3eaq_A Heat resistant RNA depe 99.7 5.3E-16 1.8E-20 151.3 14.5 125 549-681 14-138 (212)
68 2fsf_A Preprotein translocase 99.7 1.4E-15 4.8E-20 170.6 19.4 118 549-672 422-576 (853)
69 3o8b_A HCV NS3 protease/helica 99.7 5.7E-17 2E-21 180.9 7.0 100 569-682 395-515 (666)
70 2d7d_A Uvrabc system protein B 99.6 6E-14 2.1E-18 159.7 28.7 123 553-682 430-557 (661)
71 2yjt_D ATP-dependent RNA helic 99.4 2.1E-17 7.2E-22 155.5 0.0 118 551-674 15-132 (170)
72 1qde_A EIF4A, translation init 99.6 1.7E-14 5.7E-19 142.4 16.8 110 28-159 35-147 (224)
73 3jux_A Protein translocase sub 99.6 1.7E-13 5.7E-18 150.7 24.7 117 550-672 456-580 (822)
74 2gxq_A Heat resistant RNA depe 99.6 1.2E-14 4.2E-19 141.5 14.2 112 28-159 22-136 (207)
75 3i32_A Heat resistant RNA depe 99.6 9.5E-15 3.3E-19 149.3 13.5 126 549-682 11-136 (300)
76 3b6e_A Interferon-induced heli 99.6 3.2E-15 1.1E-19 146.6 9.1 118 23-159 27-148 (216)
77 2oxc_A Probable ATP-dependent 99.6 2.4E-14 8.1E-19 141.8 15.2 109 29-159 46-158 (230)
78 1vec_A ATP-dependent RNA helic 99.6 3E-14 1E-18 138.5 15.2 111 28-159 24-138 (206)
79 1t6n_A Probable ATP-dependent 99.6 1.9E-14 6.4E-19 141.6 13.5 110 29-159 36-150 (220)
80 1q0u_A Bstdead; DEAD protein, 99.6 2.4E-14 8.2E-19 140.7 13.7 111 28-159 25-142 (219)
81 2pl3_A Probable ATP-dependent 99.6 2E-14 6.8E-19 143.1 12.8 115 28-159 46-162 (236)
82 3bor_A Human initiation factor 99.5 8E-14 2.8E-18 138.7 15.1 110 29-159 52-165 (237)
83 3ber_A Probable ATP-dependent 99.5 4.5E-14 1.6E-18 141.4 12.0 111 28-159 64-177 (249)
84 1wrb_A DJVLGB; RNA helicase, D 99.5 1.2E-13 4.2E-18 138.9 13.3 120 28-159 44-166 (253)
85 3dkp_A Probable ATP-dependent 99.5 3.4E-13 1.2E-17 134.9 13.4 112 28-159 50-165 (245)
86 3iuy_A Probable ATP-dependent 99.5 5.2E-13 1.8E-17 132.0 14.3 116 28-159 41-159 (228)
87 3ly5_A ATP-dependent RNA helic 99.4 4.8E-13 1.6E-17 135.1 12.6 114 29-159 76-192 (262)
88 3fe2_A Probable ATP-dependent 99.4 1.4E-12 4.9E-17 130.1 10.6 116 28-159 50-168 (242)
89 2vl7_A XPD; helicase, unknown 99.3 2.8E-10 9.6E-15 126.8 25.1 112 555-674 370-516 (540)
90 3fmo_B ATP-dependent RNA helic 99.2 1.3E-10 4.4E-15 119.4 16.6 111 28-159 113-226 (300)
91 2ipc_A Preprotein translocase 99.0 1.3E-08 4.3E-13 114.5 22.4 97 29-155 79-180 (997)
92 3llm_A ATP-dependent RNA helic 98.7 4.5E-08 1.6E-12 96.7 9.7 109 28-159 60-171 (235)
93 3crv_A XPD/RAD3 related DNA he 98.6 1.2E-07 4.2E-12 105.9 11.0 80 29-131 3-83 (551)
94 4b3f_X DNA-binding protein smu 97.6 0.00013 4.5E-09 83.0 9.5 72 24-118 184-256 (646)
95 2gk6_A Regulator of nonsense t 97.3 0.00072 2.5E-08 76.4 10.1 68 28-118 179-247 (624)
96 2wjy_A Regulator of nonsense t 96.9 0.0017 5.8E-08 75.0 9.2 68 28-118 355-423 (800)
97 2xzl_A ATP-dependent helicase 96.9 0.0016 5.6E-08 75.2 8.4 68 28-118 359-427 (802)
98 3e1s_A Exodeoxyribonuclease V, 96.8 0.0022 7.4E-08 71.4 8.3 64 27-114 187-250 (574)
99 4a15_A XPD helicase, ATP-depen 96.7 0.00078 2.7E-08 75.8 4.0 115 554-674 433-579 (620)
100 2yur_A Retinoblastoma-binding 96.7 0.0013 4.4E-08 51.2 4.0 50 464-513 13-63 (74)
101 3ztg_A E3 ubiquitin-protein li 96.4 0.0017 5.8E-08 53.0 3.2 49 464-512 11-60 (92)
102 2ecy_A TNF receptor-associated 96.3 0.0033 1.1E-07 47.5 4.3 50 465-515 14-63 (66)
103 3upu_A ATP-dependent DNA helic 96.3 0.012 4E-07 63.8 10.2 63 28-108 24-86 (459)
104 2ysl_A Tripartite motif-contai 96.3 0.0039 1.3E-07 48.2 4.7 52 464-515 18-70 (73)
105 2egp_A Tripartite motif-contai 96.3 0.0051 1.7E-07 48.4 5.3 51 465-515 11-66 (79)
106 2ecv_A Tripartite motif-contai 96.3 0.0073 2.5E-07 48.2 6.3 52 464-515 17-72 (85)
107 1bor_A Transcription factor PM 96.3 0.0034 1.1E-07 45.7 3.8 46 465-515 5-50 (56)
108 2ecw_A Tripartite motif-contai 96.2 0.0058 2E-07 48.8 5.5 51 465-515 18-72 (85)
109 2csy_A Zinc finger protein 183 96.2 0.0027 9.3E-08 50.3 3.3 49 463-513 12-60 (81)
110 2djb_A Polycomb group ring fin 96.2 0.0054 1.9E-07 47.3 4.7 50 464-515 13-63 (72)
111 2d8t_A Dactylidin, ring finger 96.2 0.003 1E-07 48.6 3.2 51 464-516 13-63 (71)
112 3lrq_A E3 ubiquitin-protein li 96.0 0.0049 1.7E-07 51.1 4.1 49 465-514 21-70 (100)
113 2ct2_A Tripartite motif protei 96.0 0.005 1.7E-07 49.6 4.0 52 464-515 13-69 (88)
114 1w36_D RECD, exodeoxyribonucle 95.9 0.0097 3.3E-07 66.8 7.4 67 31-117 151-218 (608)
115 4ayc_A E3 ubiquitin-protein li 95.9 0.0035 1.2E-07 55.4 2.7 45 467-513 54-98 (138)
116 4a15_A XPD helicase, ATP-depen 95.8 0.027 9.4E-07 63.2 10.2 84 29-131 3-87 (620)
117 3fl2_A E3 ubiquitin-protein li 95.8 0.0041 1.4E-07 53.9 2.7 48 466-514 52-99 (124)
118 2ecj_A Tripartite motif-contai 95.7 0.011 3.9E-07 43.1 4.6 45 464-508 13-58 (58)
119 1t1h_A Gspef-atpub14, armadill 95.7 0.0054 1.9E-07 48.1 3.0 49 465-514 7-55 (78)
120 2o0j_A Terminase, DNA packagin 95.7 0.03 1E-06 58.5 9.2 71 26-118 160-231 (385)
121 2ysj_A Tripartite motif-contai 95.6 0.012 4E-07 43.9 4.4 45 464-508 18-63 (63)
122 1jm7_A BRCA1, breast cancer ty 95.6 0.0085 2.9E-07 50.7 4.1 49 466-514 21-70 (112)
123 2kre_A Ubiquitin conjugation f 95.6 0.015 5.1E-07 48.0 5.4 48 465-514 28-75 (100)
124 1z6u_A NP95-like ring finger p 95.5 0.0061 2.1E-07 54.7 2.9 49 466-515 78-126 (150)
125 1jm7_B BARD1, BRCA1-associated 95.5 0.023 8E-07 48.4 6.3 45 465-513 21-66 (117)
126 3cpe_A Terminase, DNA packagin 95.5 0.055 1.9E-06 60.5 11.0 73 26-120 160-233 (592)
127 2ea5_A Cell growth regulator w 95.5 0.018 6.3E-07 43.6 4.9 50 461-516 10-60 (68)
128 2orw_A Thymidine kinase; TMTK, 95.3 0.034 1.1E-06 51.8 7.4 35 243-280 76-111 (184)
129 2y43_A E3 ubiquitin-protein li 95.3 0.018 6.2E-07 47.5 4.8 48 465-514 21-69 (99)
130 2ckl_B Ubiquitin ligase protei 95.3 0.011 3.7E-07 54.1 3.6 48 465-513 53-101 (165)
131 3l11_A E3 ubiquitin-protein li 95.2 0.009 3.1E-07 50.9 2.8 48 465-513 14-61 (115)
132 1e4u_A Transcriptional repress 95.1 0.041 1.4E-06 42.9 6.0 53 464-517 9-65 (78)
133 2j9r_A Thymidine kinase; TK1, 95.0 0.033 1.1E-06 52.7 6.4 35 243-280 101-136 (214)
134 2ckl_A Polycomb group ring fin 95.0 0.01 3.5E-07 49.9 2.6 48 465-514 14-62 (108)
135 2ect_A Ring finger protein 126 95.0 0.038 1.3E-06 43.1 5.7 52 463-516 12-66 (78)
136 2ea6_A Ring finger protein 4; 94.9 0.0078 2.7E-07 45.8 1.4 48 464-513 13-67 (69)
137 1chc_A Equine herpes virus-1 r 94.7 0.028 9.6E-07 42.5 4.2 48 465-514 4-52 (68)
138 4ic3_A E3 ubiquitin-protein li 94.7 0.016 5.5E-07 44.8 2.8 44 466-515 24-68 (74)
139 1g25_A CDK-activating kinase a 94.7 0.013 4.5E-07 44.0 2.2 49 466-515 3-56 (65)
140 1wgm_A Ubiquitin conjugation f 94.7 0.027 9.1E-07 46.2 4.2 48 465-514 21-69 (98)
141 2ecg_A Baculoviral IAP repeat- 94.7 0.024 8.2E-07 43.9 3.7 44 466-515 25-69 (75)
142 2kr4_A Ubiquitin conjugation f 94.7 0.015 5E-07 46.5 2.5 48 465-514 13-60 (85)
143 1iym_A EL5; ring-H2 finger, ub 94.6 0.035 1.2E-06 39.9 4.2 47 465-513 4-54 (55)
144 2kiz_A E3 ubiquitin-protein li 94.5 0.026 8.8E-07 42.9 3.4 53 462-516 10-65 (69)
145 2vje_B MDM4 protein; proto-onc 94.5 0.018 6E-07 43.0 2.3 50 463-514 4-56 (63)
146 2f42_A STIP1 homology and U-bo 94.4 0.016 5.6E-07 53.0 2.4 49 465-514 105-153 (179)
147 2ecm_A Ring finger and CHY zin 94.3 0.023 7.9E-07 40.9 2.7 46 466-513 5-54 (55)
148 2c2l_A CHIP, carboxy terminus 94.3 0.016 5.6E-07 58.1 2.5 49 465-514 207-255 (281)
149 2y1n_A E3 ubiquitin-protein li 94.2 0.019 6.6E-07 59.2 2.7 49 466-515 332-380 (389)
150 3htk_C E3 SUMO-protein ligase 94.1 0.043 1.5E-06 53.0 4.8 51 463-513 178-231 (267)
151 1xx6_A Thymidine kinase; NESG, 94.1 0.056 1.9E-06 50.5 5.4 34 53-105 12-45 (191)
152 2b8t_A Thymidine kinase; deoxy 94.0 0.039 1.3E-06 52.9 4.3 35 243-280 89-124 (223)
153 3vkw_A Replicase large subunit 93.9 0.11 3.8E-06 54.9 7.8 43 51-117 163-206 (446)
154 1v87_A Deltex protein 2; ring- 93.9 0.039 1.3E-06 46.7 3.6 50 466-515 25-95 (114)
155 3hct_A TNF receptor-associated 93.9 0.023 7.9E-07 48.6 2.2 49 465-514 17-65 (118)
156 2xeu_A Ring finger protein 4; 93.6 0.014 4.7E-07 43.6 0.3 48 466-515 3-57 (64)
157 1rmd_A RAG1; V(D)J recombinati 93.6 0.028 9.6E-07 47.9 2.2 49 465-514 22-70 (116)
158 3ng2_A RNF4, snurf, ring finge 93.5 0.015 5.2E-07 44.4 0.4 49 465-515 9-64 (71)
159 2yho_A E3 ubiquitin-protein li 93.3 0.043 1.5E-06 43.0 2.6 44 466-515 18-62 (79)
160 2vje_A E3 ubiquitin-protein li 93.2 0.048 1.6E-06 40.7 2.6 48 465-514 7-57 (64)
161 2ep4_A Ring finger protein 24; 93.1 0.085 2.9E-06 40.6 4.1 49 464-514 13-64 (74)
162 2orv_A Thymidine kinase; TP4A 93.0 0.14 4.9E-06 48.8 6.3 33 243-279 90-123 (234)
163 2yu4_A E3 SUMO-protein ligase 92.8 0.049 1.7E-06 44.3 2.4 47 465-511 6-59 (94)
164 2l0b_A E3 ubiquitin-protein li 92.8 0.052 1.8E-06 43.8 2.6 49 464-514 38-89 (91)
165 2ecn_A Ring finger protein 141 92.7 0.037 1.3E-06 42.1 1.4 48 465-515 14-61 (70)
166 3crv_A XPD/RAD3 related DNA he 92.6 0.81 2.8E-05 50.5 12.8 90 554-651 378-473 (551)
167 1l8q_A Chromosomal replication 92.5 0.53 1.8E-05 47.9 10.4 25 49-73 37-61 (324)
168 3syl_A Protein CBBX; photosynt 92.3 0.56 1.9E-05 47.3 10.3 25 50-74 68-92 (309)
169 1x4j_A Ring finger protein 38; 92.2 0.054 1.9E-06 41.9 1.9 48 464-513 21-71 (75)
170 3t6p_A Baculoviral IAP repeat- 91.7 0.082 2.8E-06 54.1 3.0 45 465-515 294-339 (345)
171 3u61_B DNA polymerase accessor 91.6 0.6 2E-05 47.5 9.5 54 243-296 105-160 (324)
172 3e2i_A Thymidine kinase; Zn-bi 91.4 0.21 7.3E-06 47.1 5.2 21 53-73 32-52 (219)
173 1w4r_A Thymidine kinase; type 90.9 0.26 8.9E-06 45.8 5.2 32 244-279 92-124 (195)
174 3knv_A TNF receptor-associated 90.7 0.037 1.3E-06 48.9 -0.6 49 464-513 29-77 (141)
175 3eie_A Vacuolar protein sortin 90.3 0.26 9E-06 50.2 5.3 23 50-72 52-74 (322)
176 2z4s_A Chromosomal replication 89.7 1.3 4.4E-05 47.2 10.4 25 49-73 130-154 (440)
177 2chg_A Replication factor C sm 89.5 0.9 3.1E-05 42.7 8.2 41 31-73 22-62 (226)
178 3hcs_A TNF receptor-associated 89.5 0.13 4.3E-06 47.1 1.9 49 465-514 17-65 (170)
179 2p65_A Hypothetical protein PF 89.3 0.96 3.3E-05 41.2 8.0 24 50-73 44-67 (187)
180 3n70_A Transport activator; si 89.2 0.73 2.5E-05 40.6 6.7 24 50-73 25-48 (145)
181 4ap4_A E3 ubiquitin ligase RNF 89.1 0.11 3.6E-06 45.3 1.0 49 465-515 6-61 (133)
182 3bos_A Putative DNA replicatio 88.0 0.42 1.4E-05 45.9 4.7 24 50-73 53-76 (242)
183 1wim_A KIAA0161 protein; ring 86.5 0.17 5.8E-06 41.0 0.7 46 466-511 5-61 (94)
184 2qp9_X Vacuolar protein sortin 86.1 0.55 1.9E-05 48.6 4.5 24 50-73 85-108 (355)
185 2ecl_A Ring-box protein 2; RNF 86.1 0.5 1.7E-05 36.9 3.2 48 466-515 15-77 (81)
186 1iqp_A RFCS; clamp loader, ext 84.5 2.2 7.6E-05 43.0 8.2 41 31-73 30-70 (327)
187 3lfu_A DNA helicase II; SF1 he 84.2 1.1 3.8E-05 50.4 6.3 71 28-120 8-79 (647)
188 3h4m_A Proteasome-activating n 83.6 0.74 2.5E-05 45.8 4.0 24 49-72 51-74 (285)
189 2qz4_A Paraplegin; AAA+, SPG7, 83.4 6.3 0.00022 38.1 10.7 24 49-72 39-62 (262)
190 2qby_B CDC6 homolog 3, cell di 83.0 3.7 0.00013 42.5 9.3 43 31-73 25-69 (384)
191 3dpl_R Ring-box protein 1; ubi 82.7 0.78 2.7E-05 38.0 3.0 47 466-514 37-101 (106)
192 1gm5_A RECG; helicase, replica 81.6 4.4 0.00015 46.4 9.8 99 549-650 398-500 (780)
193 1jr3_A DNA polymerase III subu 80.2 2.9 0.0001 43.1 7.3 43 31-74 21-63 (373)
194 2bay_A PRE-mRNA splicing facto 80.1 0.64 2.2E-05 34.1 1.4 48 466-515 3-51 (61)
195 3vfd_A Spastin; ATPase, microt 79.9 1.9 6.6E-05 45.0 5.7 24 49-72 148-171 (389)
196 3hu3_A Transitional endoplasmi 79.8 2.8 9.5E-05 45.2 7.0 26 47-72 236-261 (489)
197 2d8s_A Cellular modulator of i 77.9 2.5 8.4E-05 32.8 4.3 55 463-517 12-73 (80)
198 1sxj_B Activator 1 37 kDa subu 77.1 2.1 7.3E-05 43.0 4.9 41 31-73 26-66 (323)
199 3oiy_A Reverse gyrase helicase 76.5 7.7 0.00026 40.6 9.3 95 549-646 45-145 (414)
200 4ap4_A E3 ubiquitin ligase RNF 76.5 0.58 2E-05 40.4 0.3 50 464-515 70-126 (133)
201 2zpa_A Uncharacterized protein 76.1 5.2 0.00018 44.5 7.8 40 29-72 175-214 (671)
202 2gno_A DNA polymerase III, gam 75.3 3.8 0.00013 41.1 6.1 22 50-71 19-40 (305)
203 2l82_A Designed protein OR32; 74.1 14 0.00048 29.6 7.6 48 572-619 4-51 (162)
204 3ec2_A DNA replication protein 72.9 3.4 0.00012 37.5 4.7 43 31-73 16-62 (180)
205 3pvs_A Replication-associated 72.5 3.8 0.00013 43.7 5.5 24 50-73 51-74 (447)
206 4b4t_L 26S protease subunit RP 70.8 1.3 4.4E-05 46.8 1.4 27 47-73 213-239 (437)
207 1uaa_A REP helicase, protein ( 70.3 3.3 0.00011 46.8 4.7 70 29-120 2-72 (673)
208 4b4t_J 26S protease regulatory 69.4 1.3 4.5E-05 46.1 1.0 49 47-117 180-228 (405)
209 4b4t_M 26S protease regulatory 68.9 1.5 5.2E-05 46.3 1.4 48 47-116 213-260 (434)
210 1sxj_E Activator 1 40 kDa subu 68.3 9.9 0.00034 38.7 7.5 39 34-72 19-59 (354)
211 3ber_A Probable ATP-dependent 68.2 26 0.0009 33.5 10.2 93 549-646 89-192 (249)
212 2oxc_A Probable ATP-dependent 67.5 14 0.00048 34.9 8.0 92 549-646 70-172 (230)
213 2w58_A DNAI, primosome compone 67.2 5.4 0.00019 36.9 4.8 25 50-74 55-79 (202)
214 1t6n_A Probable ATP-dependent 66.2 23 0.00078 33.0 9.2 114 549-666 60-186 (220)
215 4b4t_I 26S protease regulatory 66.1 1.9 6.6E-05 45.2 1.5 48 47-116 214-261 (437)
216 3vk6_A E3 ubiquitin-protein li 64.0 2.7 9.2E-05 33.7 1.6 47 468-515 3-50 (101)
217 4b4t_K 26S protease regulatory 63.4 2.1 7.3E-05 45.1 1.2 26 47-72 204-229 (428)
218 4b4t_H 26S protease regulatory 63.2 2.3 8E-05 45.0 1.4 26 47-72 241-266 (467)
219 4ddu_A Reverse gyrase; topoiso 63.0 17 0.00059 43.4 9.0 95 549-646 102-202 (1104)
220 1qvr_A CLPB protein; coiled co 62.4 17 0.00059 42.2 8.8 24 50-73 192-215 (854)
221 4a0k_B E3 ubiquitin-protein li 61.8 1.7 5.7E-05 36.6 0.0 47 466-514 48-112 (117)
222 3i42_A Response regulator rece 61.5 20 0.00068 29.6 7.0 77 590-668 43-124 (127)
223 1pjr_A PCRA; DNA repair, DNA r 61.4 7.2 0.00025 44.4 5.2 71 28-120 10-81 (724)
224 3co5_A Putative two-component 60.7 4.5 0.00015 35.2 2.7 33 36-68 14-46 (143)
225 3ipz_A Monothiol glutaredoxin- 60.2 46 0.0016 27.1 8.8 66 558-626 8-79 (109)
226 3gx8_A Monothiol glutaredoxin- 58.8 60 0.002 27.0 9.4 67 557-626 5-80 (121)
227 1tue_A Replication protein E1; 58.1 5.8 0.0002 37.0 3.0 24 50-73 59-82 (212)
228 2eyq_A TRCF, transcription-rep 58.0 27 0.00091 42.0 9.5 98 548-648 632-733 (1151)
229 2qgz_A Helicase loader, putati 57.9 8.5 0.00029 38.6 4.5 25 50-74 153-177 (308)
230 1a5t_A Delta prime, HOLB; zinc 57.3 6.7 0.00023 39.8 3.7 46 30-75 3-50 (334)
231 2j48_A Two-component sensor ki 57.1 22 0.00077 28.4 6.5 18 647-664 99-116 (119)
232 3hjh_A Transcription-repair-co 56.3 14 0.00046 39.7 6.0 65 570-648 382-446 (483)
233 3g5j_A Putative ATP/GTP bindin 55.1 15 0.0005 31.1 5.0 52 551-605 72-125 (134)
234 2wul_A Glutaredoxin related pr 54.8 68 0.0023 26.7 8.9 56 572-628 21-84 (118)
235 3lte_A Response regulator; str 54.2 54 0.0018 26.9 8.6 31 570-600 6-36 (132)
236 3cg4_A Response regulator rece 54.2 93 0.0032 25.8 11.2 19 647-665 108-126 (142)
237 3h5i_A Response regulator/sens 54.0 93 0.0032 25.9 10.3 29 571-599 6-34 (140)
238 1wp9_A ATP-dependent RNA helic 53.4 31 0.0011 36.2 8.5 91 549-646 32-131 (494)
239 3u4q_B ATP-dependent helicase/ 53.1 14 0.00047 44.7 6.1 51 54-120 6-56 (1166)
240 2zan_A Vacuolar protein sortin 52.9 7.2 0.00024 41.4 3.1 25 49-73 167-191 (444)
241 3cf0_A Transitional endoplasmi 52.7 15 0.00051 36.5 5.3 25 49-73 49-73 (301)
242 3fe2_A Probable ATP-dependent 52.3 69 0.0024 30.1 10.0 93 549-646 75-182 (242)
243 3a10_A Response regulator; pho 52.3 63 0.0022 25.7 8.5 16 648-663 99-114 (116)
244 1jbk_A CLPB protein; beta barr 52.2 11 0.00036 34.0 3.8 41 31-73 27-67 (195)
245 3t15_A Ribulose bisphosphate c 52.1 5.4 0.00019 39.7 1.9 25 49-73 36-60 (293)
246 3q9s_A DNA-binding response re 50.7 1.2E+02 0.0043 28.5 11.6 129 590-721 77-231 (249)
247 2pl3_A Probable ATP-dependent 50.4 49 0.0017 31.0 8.5 92 549-646 71-177 (236)
248 2bjv_A PSP operon transcriptio 49.5 26 0.0009 33.7 6.5 24 50-73 30-53 (265)
249 1qde_A EIF4A, translation init 49.3 23 0.00077 33.1 5.8 94 549-648 60-163 (224)
250 3zyw_A Glutaredoxin-3; metal b 48.7 81 0.0028 25.7 8.5 65 558-626 6-77 (111)
251 1xti_A Probable ATP-dependent 48.3 57 0.0019 33.2 9.3 94 549-646 54-158 (391)
252 3iuy_A Probable ATP-dependent 48.0 47 0.0016 30.9 7.9 93 549-646 66-173 (228)
253 3uk6_A RUVB-like 2; hexameric 47.5 12 0.00041 38.3 3.7 43 31-73 49-94 (368)
254 2wem_A Glutaredoxin-related pr 47.1 88 0.003 25.9 8.5 54 572-626 21-82 (118)
255 1xwi_A SKD1 protein; VPS4B, AA 46.7 5 0.00017 40.6 0.6 24 50-73 46-69 (322)
256 3tbk_A RIG-I helicase domain; 46.4 29 0.001 37.5 7.0 93 549-646 28-133 (555)
257 3f6p_A Transcriptional regulat 45.7 1E+02 0.0035 24.7 8.9 27 572-598 4-30 (120)
258 2zts_A Putative uncharacterize 45.5 12 0.00039 35.8 3.1 21 52-72 33-53 (251)
259 3grc_A Sensor protein, kinase; 45.3 90 0.0031 25.8 8.7 27 571-597 7-33 (140)
260 2r62_A Cell division protease 45.1 11 0.00038 36.6 2.9 24 49-72 44-67 (268)
261 2c9o_A RUVB-like 1; hexameric 45.0 15 0.00052 39.0 4.2 24 50-73 64-87 (456)
262 2wci_A Glutaredoxin-4; redox-a 44.9 1.1E+02 0.0037 26.1 8.8 68 556-626 23-96 (135)
263 3dm5_A SRP54, signal recogniti 44.4 14 0.00047 39.0 3.5 24 52-75 103-126 (443)
264 2r44_A Uncharacterized protein 44.2 7.9 0.00027 39.1 1.7 24 50-73 47-70 (331)
265 2r8r_A Sensor protein; KDPD, P 44.2 8.4 0.00029 36.5 1.7 26 51-76 8-33 (228)
266 3eqz_A Response regulator; str 44.0 1.3E+02 0.0044 24.5 9.4 23 646-668 105-127 (135)
267 3ly5_A ATP-dependent RNA helic 43.6 1.1E+02 0.0037 29.2 9.9 93 549-646 100-207 (262)
268 1ojl_A Transcriptional regulat 43.5 25 0.00087 34.9 5.3 27 47-73 23-49 (304)
269 4a2q_A RIG-I, retinoic acid in 43.1 44 0.0015 38.4 8.0 94 548-646 271-377 (797)
270 4a2p_A RIG-I, retinoic acid in 42.6 37 0.0013 36.7 7.0 93 549-646 31-136 (556)
271 1ofh_A ATP-dependent HSL prote 42.6 21 0.00072 35.2 4.6 24 49-72 50-73 (310)
272 3gk5_A Uncharacterized rhodane 42.5 25 0.00086 28.6 4.3 37 568-604 53-89 (108)
273 3foj_A Uncharacterized protein 41.8 21 0.0007 28.6 3.6 36 569-604 55-90 (100)
274 2qxy_A Response regulator; reg 41.7 98 0.0033 25.7 8.4 28 571-598 5-32 (142)
275 1njg_A DNA polymerase III subu 41.2 22 0.00075 33.2 4.3 42 31-73 28-69 (250)
276 1u0j_A DNA replication protein 41.2 18 0.00061 35.2 3.6 24 50-73 105-128 (267)
277 3cnb_A DNA-binding response re 40.9 1.2E+02 0.0042 24.9 8.9 26 571-596 9-35 (143)
278 3cf2_A TER ATPase, transitiona 40.7 12 0.0004 42.9 2.5 26 48-73 510-535 (806)
279 3te6_A Regulatory protein SIR3 40.6 17 0.00057 36.5 3.4 44 31-74 25-70 (318)
280 1u6t_A SH3 domain-binding glut 40.0 64 0.0022 27.0 6.4 45 573-617 2-53 (121)
281 1d2n_A N-ethylmaleimide-sensit 39.6 16 0.00054 35.6 3.1 26 47-72 62-87 (272)
282 2ct0_A Non-SMC element 1 homol 39.6 64 0.0022 24.3 5.7 55 461-515 10-65 (74)
283 3eme_A Rhodanese-like domain p 39.2 21 0.00072 28.7 3.3 36 569-604 55-90 (103)
284 3k1l_B Fancl; UBC, ring, RWD, 39.0 12 0.00041 37.6 1.9 56 463-518 305-377 (381)
285 1gku_B Reverse gyrase, TOP-RG; 38.9 59 0.002 38.6 8.3 93 549-646 80-181 (1054)
286 3pfi_A Holliday junction ATP-d 38.8 26 0.0009 35.2 4.7 41 32-72 35-78 (338)
287 3kht_A Response regulator; PSI 38.4 1.2E+02 0.004 25.3 8.4 27 570-596 5-31 (144)
288 3d8b_A Fidgetin-like protein 1 38.4 21 0.00073 36.4 3.9 24 49-72 117-140 (357)
289 3gl9_A Response regulator; bet 38.3 1.2E+02 0.0041 24.4 8.2 28 572-599 4-31 (122)
290 2kpo_A Rossmann 2X2 fold prote 38.2 1.2E+02 0.0042 22.6 7.8 65 555-620 36-100 (110)
291 1zgz_A Torcad operon transcrip 38.1 1.3E+02 0.0046 23.9 8.4 27 572-598 4-30 (122)
292 3kto_A Response regulator rece 37.8 80 0.0027 26.1 7.1 62 570-638 6-70 (136)
293 2yan_A Glutaredoxin-3; oxidore 37.5 1.5E+02 0.0051 23.5 8.3 65 558-625 7-77 (105)
294 3hdv_A Response regulator; PSI 37.1 1.3E+02 0.0045 24.6 8.4 31 570-600 7-37 (136)
295 1q0u_A Bstdead; DEAD protein, 37.0 23 0.00078 33.0 3.6 93 549-646 50-156 (219)
296 3fwy_A Light-independent proto 36.9 13 0.00045 37.3 1.9 24 54-77 53-76 (314)
297 3iwh_A Rhodanese-like domain p 36.8 26 0.00087 28.4 3.4 36 569-604 55-90 (103)
298 2gxq_A Heat resistant RNA depe 36.7 1E+02 0.0035 27.8 8.2 94 549-647 47-151 (207)
299 2v1u_A Cell division control p 36.7 23 0.0008 36.1 3.9 43 31-73 24-68 (387)
300 1byi_A Dethiobiotin synthase; 36.6 15 0.00051 34.4 2.2 24 53-76 6-29 (224)
301 1hv8_A Putative ATP-dependent 36.3 91 0.0031 31.1 8.5 77 549-631 53-133 (367)
302 1dbw_A Transcriptional regulat 36.2 1.6E+02 0.0054 23.6 8.7 29 571-599 4-32 (126)
303 2db3_A ATP-dependent RNA helic 36.0 1E+02 0.0034 32.2 8.9 93 549-646 102-209 (434)
304 1vec_A ATP-dependent RNA helic 36.0 93 0.0032 28.1 7.8 93 549-646 49-152 (206)
305 3ea0_A ATPase, para family; al 36.0 18 0.00063 34.3 2.8 24 53-76 9-32 (245)
306 1wrb_A DJVLGB; RNA helicase, D 35.8 1.6E+02 0.0055 27.6 9.7 95 549-648 69-182 (253)
307 2gkg_A Response regulator homo 35.8 1E+02 0.0034 24.7 7.3 28 572-599 7-34 (127)
308 3nbx_X ATPase RAVA; AAA+ ATPas 35.7 11 0.00039 40.5 1.3 24 50-73 42-65 (500)
309 1oyw_A RECQ helicase, ATP-depe 35.2 54 0.0019 35.4 6.7 61 571-632 66-126 (523)
310 1wv9_A Rhodanese homolog TT165 35.0 30 0.001 27.1 3.5 35 571-605 54-88 (94)
311 3b9p_A CG5977-PA, isoform A; A 34.6 28 0.00095 34.2 4.0 24 49-72 54-77 (297)
312 1qkk_A DCTD, C4-dicarboxylate 34.5 1.1E+02 0.0038 25.9 7.6 61 570-637 3-64 (155)
313 3gt7_A Sensor protein; structu 34.5 1.2E+02 0.0041 25.7 7.9 63 569-638 6-69 (154)
314 2r2a_A Uncharacterized protein 34.0 19 0.00066 33.3 2.5 22 52-73 8-29 (199)
315 3hix_A ALR3790 protein; rhodan 33.3 34 0.0011 27.6 3.6 37 568-604 50-87 (106)
316 2dr3_A UPF0273 protein PH0284; 33.2 26 0.00088 33.1 3.3 46 52-116 26-71 (247)
317 2rdm_A Response regulator rece 33.2 1.9E+02 0.0065 23.3 9.9 26 572-597 7-32 (132)
318 3hws_A ATP-dependent CLP prote 33.2 32 0.0011 35.1 4.3 24 50-73 52-75 (363)
319 3u4q_A ATP-dependent helicase/ 33.1 34 0.0012 41.5 5.0 59 27-105 8-66 (1232)
320 1gmx_A GLPE protein; transfera 32.9 39 0.0013 27.3 4.0 38 568-605 56-94 (108)
321 1tmy_A CHEY protein, TMY; chem 32.7 1.6E+02 0.0056 23.2 8.1 25 572-596 4-28 (120)
322 3hv2_A Response regulator/HD d 32.6 1.5E+02 0.0052 24.9 8.2 31 570-600 14-44 (153)
323 1t1v_A SH3BGRL3, SH3 domain-bi 32.2 88 0.003 24.3 5.9 46 572-617 3-55 (93)
324 2zay_A Response regulator rece 32.2 87 0.003 26.2 6.4 29 570-598 8-36 (147)
325 1lv7_A FTSH; alpha/beta domain 31.8 17 0.00059 34.9 1.8 23 49-71 45-67 (257)
326 3kjh_A CO dehydrogenase/acetyl 31.4 17 0.00057 34.6 1.6 22 55-76 6-27 (254)
327 3b6e_A Interferon-induced heli 31.3 45 0.0015 30.5 4.6 79 549-632 57-143 (216)
328 3flh_A Uncharacterized protein 31.3 32 0.0011 28.7 3.3 37 568-604 69-107 (124)
329 2jtq_A Phage shock protein E; 31.2 76 0.0026 24.1 5.3 36 568-604 39-75 (85)
330 2qr3_A Two-component system re 31.0 1.3E+02 0.0045 24.7 7.4 28 571-598 4-31 (140)
331 2a9o_A Response regulator; ess 30.8 1.1E+02 0.0038 24.2 6.7 26 572-597 3-28 (120)
332 1cp2_A CP2, nitrogenase iron p 30.6 21 0.00074 34.4 2.3 22 55-76 7-28 (269)
333 1hqc_A RUVB; extended AAA-ATPa 30.5 61 0.0021 32.0 5.8 23 50-72 39-61 (324)
334 2qmh_A HPR kinase/phosphorylas 30.1 17 0.00058 33.7 1.3 24 50-73 35-58 (205)
335 3pxg_A Negative regulator of g 30.0 35 0.0012 36.3 4.0 24 50-73 202-225 (468)
336 3nhv_A BH2092 protein; alpha-b 29.9 40 0.0014 29.1 3.7 36 569-604 71-108 (144)
337 3hdg_A Uncharacterized protein 29.9 1.2E+02 0.0042 24.8 7.0 30 571-600 8-37 (137)
338 3nhm_A Response regulator; pro 29.8 2.2E+02 0.0075 22.9 10.2 95 569-667 26-123 (133)
339 1fuu_A Yeast initiation factor 29.7 80 0.0027 32.0 6.7 64 549-612 67-135 (394)
340 2l82_A Designed protein OR32; 29.5 2.2E+02 0.0074 22.8 8.7 69 555-625 62-133 (162)
341 2rjn_A Response regulator rece 29.5 1.6E+02 0.0054 24.8 7.8 63 569-638 6-69 (154)
342 1srr_A SPO0F, sporulation resp 29.3 1.5E+02 0.0052 23.6 7.3 26 572-597 5-30 (124)
343 2qzj_A Two-component response 28.8 1.7E+02 0.0058 24.0 7.7 29 571-599 5-33 (136)
344 3of5_A Dethiobiotin synthetase 28.7 25 0.00087 33.2 2.3 25 53-77 9-33 (228)
345 1y80_A Predicted cobalamin bin 28.6 2.3E+02 0.0078 25.9 9.1 55 570-628 88-146 (210)
346 2i4i_A ATP-dependent RNA helic 28.4 2.2E+02 0.0075 28.9 10.0 93 549-646 61-181 (417)
347 1um8_A ATP-dependent CLP prote 28.3 25 0.00085 36.1 2.4 24 50-73 73-96 (376)
348 1mvo_A PHOP response regulator 28.2 2.4E+02 0.0081 22.8 8.8 17 649-665 104-120 (136)
349 3eod_A Protein HNR; response r 28.0 1.5E+02 0.0051 23.9 7.1 82 569-657 6-95 (130)
350 1sxj_A Activator 1 95 kDa subu 27.9 38 0.0013 36.5 3.9 24 50-73 78-101 (516)
351 1zh2_A KDP operon transcriptio 27.9 1.5E+02 0.005 23.5 6.9 24 573-596 4-27 (121)
352 3qxc_A Dethiobiotin synthetase 27.8 27 0.00094 33.4 2.4 25 53-77 26-50 (242)
353 3fgn_A Dethiobiotin synthetase 27.6 19 0.00064 34.8 1.2 25 53-77 31-55 (251)
354 2q6t_A DNAB replication FORK h 27.6 42 0.0015 35.3 4.1 46 52-115 203-248 (444)
355 3cf2_A TER ATPase, transitiona 27.5 22 0.00074 40.7 1.8 25 48-72 237-261 (806)
356 1g3q_A MIND ATPase, cell divis 27.5 26 0.00087 33.0 2.2 23 53-75 7-29 (237)
357 3snk_A Response regulator CHEY 27.4 80 0.0027 26.1 5.2 81 569-656 13-102 (135)
358 2v1x_A ATP-dependent DNA helic 27.2 1.5E+02 0.0052 32.3 8.7 62 570-631 84-146 (591)
359 2r2a_A Uncharacterized protein 27.1 29 0.00099 32.0 2.4 38 244-281 88-132 (199)
360 2ct6_A SH3 domain-binding glut 26.9 1.2E+02 0.0041 24.6 6.0 46 571-616 8-60 (111)
361 3zq6_A Putative arsenical pump 26.9 24 0.00082 35.4 1.9 24 53-76 18-41 (324)
362 1xhf_A DYE resistance, aerobic 26.8 1.7E+02 0.0058 23.2 7.2 28 571-598 4-31 (123)
363 1k66_A Phytochrome response re 26.8 1.8E+02 0.0063 23.9 7.7 32 569-600 5-38 (149)
364 3iqw_A Tail-anchored protein t 26.8 31 0.0011 34.8 2.7 25 52-76 19-43 (334)
365 2q5c_A NTRC family transcripti 26.7 1.4E+02 0.0048 27.2 7.0 93 570-669 4-96 (196)
366 2hhg_A Hypothetical protein RP 26.5 40 0.0014 28.7 3.1 36 569-604 85-121 (139)
367 2afh_E Nitrogenase iron protei 26.5 25 0.00085 34.5 1.9 22 55-76 8-29 (289)
368 2k0z_A Uncharacterized protein 26.4 70 0.0024 25.9 4.5 38 568-605 54-91 (110)
369 3eul_A Possible nitrate/nitrit 26.4 2.1E+02 0.0073 23.9 8.0 27 569-595 14-40 (152)
370 3fmo_B ATP-dependent RNA helic 26.3 76 0.0026 31.2 5.5 90 549-646 140-241 (300)
371 3cg0_A Response regulator rece 26.2 1.4E+02 0.0049 24.4 6.7 63 569-638 8-73 (140)
372 1sxj_C Activator 1 40 kDa subu 26.1 39 0.0013 34.0 3.4 39 33-73 32-70 (340)
373 3end_A Light-independent proto 26.1 25 0.00087 34.8 1.9 23 54-76 46-68 (307)
374 2fsx_A RV0390, COG0607: rhodan 26.1 54 0.0018 28.3 3.9 37 569-605 79-116 (148)
375 1tq1_A AT5G66040, senescence-a 25.9 41 0.0014 28.3 3.0 38 568-605 80-118 (129)
376 4dzz_A Plasmid partitioning pr 25.6 30 0.001 31.6 2.2 22 54-75 7-28 (206)
377 1k68_A Phytochrome response re 25.5 1.7E+02 0.0058 23.8 7.1 62 570-637 2-72 (140)
378 3q9l_A Septum site-determining 25.4 29 0.00099 33.2 2.2 24 53-76 7-30 (260)
379 3dmn_A Putative DNA helicase; 25.4 3E+02 0.01 24.1 9.0 80 553-651 46-125 (174)
380 2ph1_A Nucleotide-binding prot 25.4 29 0.00099 33.4 2.2 24 53-76 23-46 (262)
381 3a8t_A Adenylate isopentenyltr 24.7 32 0.0011 34.7 2.3 23 51-73 42-64 (339)
382 1qxn_A SUD, sulfide dehydrogen 24.7 46 0.0016 28.4 3.1 37 568-604 80-117 (137)
383 1jbe_A Chemotaxis protein CHEY 24.7 2.6E+02 0.0091 22.2 8.4 25 571-595 5-29 (128)
384 3tqf_A HPR(Ser) kinase; transf 24.6 24 0.00081 31.9 1.2 23 50-72 17-39 (181)
385 3bh0_A DNAB-like replicative h 24.4 73 0.0025 31.6 5.0 22 52-73 71-92 (315)
386 1hyq_A MIND, cell division inh 24.3 31 0.001 33.1 2.1 24 53-76 7-30 (263)
387 2qby_A CDC6 homolog 1, cell di 24.2 42 0.0014 34.1 3.3 43 31-73 25-69 (386)
388 3f6c_A Positive transcription 24.1 2.1E+02 0.0071 23.1 7.3 16 650-665 104-119 (134)
389 3jte_A Response regulator rece 24.0 2.6E+02 0.0087 22.9 8.0 79 571-655 4-91 (143)
390 1iy2_A ATP-dependent metallopr 23.9 82 0.0028 30.4 5.2 23 50-72 74-96 (278)
391 2ykg_A Probable ATP-dependent 23.9 1.1E+02 0.0038 34.0 7.0 95 549-648 37-144 (696)
392 2r6a_A DNAB helicase, replicat 23.8 58 0.002 34.4 4.3 24 51-74 205-228 (454)
393 1ixz_A ATP-dependent metallopr 23.7 30 0.001 33.1 1.8 23 50-72 50-72 (254)
394 1wik_A Thioredoxin-like protei 23.7 2.7E+02 0.0094 22.1 7.7 47 571-617 15-67 (109)
395 1g41_A Heat shock protein HSLU 23.6 36 0.0012 35.9 2.5 25 49-73 50-74 (444)
396 2yxb_A Coenzyme B12-dependent 23.6 2E+02 0.0068 25.2 7.2 57 569-629 17-77 (161)
397 4fcw_A Chaperone protein CLPB; 23.5 26 0.00088 34.7 1.4 23 51-73 49-71 (311)
398 1xp8_A RECA protein, recombina 23.5 28 0.00095 35.7 1.6 44 50-112 75-118 (366)
399 2oze_A ORF delta'; para, walke 23.5 42 0.0014 33.0 2.9 20 56-75 44-63 (298)
400 4dad_A Putative pilus assembly 23.4 3.1E+02 0.011 22.5 11.0 19 647-665 122-140 (146)
401 4gl2_A Interferon-induced heli 23.4 24 0.00081 39.8 1.2 95 549-648 31-144 (699)
402 1s2m_A Putative ATP-dependent 23.4 2.1E+02 0.0072 28.9 8.6 95 549-648 67-171 (400)
403 2woj_A ATPase GET3; tail-ancho 23.4 34 0.0012 34.8 2.3 23 52-74 21-43 (354)
404 4dpp_A DHDPS 2, dihydrodipicol 23.4 2.2E+02 0.0077 28.8 8.3 12 641-652 155-166 (360)
405 3d1p_A Putative thiosulfate su 23.3 54 0.0019 27.8 3.3 36 569-604 90-126 (139)
406 1vyx_A ORF K3, K3RING; zinc-bi 23.2 51 0.0018 23.6 2.6 50 465-514 5-59 (60)
407 3crn_A Response regulator rece 23.2 2.5E+02 0.0085 22.7 7.7 28 571-598 4-31 (132)
408 3k9g_A PF-32 protein; ssgcid, 23.1 42 0.0014 32.3 2.8 22 53-74 32-53 (267)
409 2jba_A Phosphate regulon trans 23.1 1.9E+02 0.0066 23.0 6.9 27 572-598 4-30 (127)
410 3bor_A Human initiation factor 23.1 1.5E+02 0.0051 27.6 6.8 94 549-646 76-179 (237)
411 3h1g_A Chemotaxis protein CHEY 22.9 2.9E+02 0.01 22.1 8.1 26 571-596 6-31 (129)
412 3ilm_A ALR3790 protein; rhodan 22.7 66 0.0023 27.5 3.7 37 568-604 54-91 (141)
413 3kl4_A SRP54, signal recogniti 22.5 36 0.0012 35.7 2.3 24 52-75 100-123 (433)
414 3cio_A ETK, tyrosine-protein k 22.5 34 0.0012 33.8 2.0 21 55-75 111-131 (299)
415 3ug7_A Arsenical pump-driving 22.3 48 0.0017 33.6 3.2 25 52-76 29-53 (349)
416 2x8a_A Nuclear valosin-contain 22.2 33 0.0011 33.5 1.8 22 50-71 45-66 (274)
417 1e9r_A Conjugal transfer prote 22.0 33 0.0011 36.0 1.9 40 50-108 54-93 (437)
418 1u94_A RECA protein, recombina 21.9 36 0.0012 34.7 2.1 26 50-75 64-89 (356)
419 3to5_A CHEY homolog; alpha(5)b 21.8 3.5E+02 0.012 22.6 9.3 27 570-596 12-38 (134)
420 3klo_A Transcriptional regulat 21.8 3.4E+02 0.012 24.6 9.1 97 569-667 31-130 (225)
421 1g8p_A Magnesium-chelatase 38 21.7 24 0.00082 35.6 0.7 24 50-73 46-69 (350)
422 1g5t_A COB(I)alamin adenosyltr 21.7 38 0.0013 31.1 2.0 27 50-76 29-55 (196)
423 3t6k_A Response regulator rece 21.4 2.7E+02 0.0093 22.7 7.6 27 572-598 6-32 (136)
424 3k1j_A LON protease, ATP-depen 21.3 1.6E+02 0.0054 32.4 7.3 25 50-74 61-85 (604)
425 4a2w_A RIG-I, retinoic acid in 21.3 72 0.0025 37.3 4.8 94 548-646 271-377 (936)
426 3bfv_A CAPA1, CAPB2, membrane 21.2 39 0.0013 32.8 2.2 21 55-75 89-109 (271)
427 2csu_A 457AA long hypothetical 21.2 3.3E+02 0.011 28.5 9.5 85 571-676 150-236 (457)
428 2xxa_A Signal recognition part 21.1 43 0.0015 35.2 2.5 26 51-76 102-127 (433)
429 2owm_A Nckin3-434, related to 21.0 31 0.0011 36.3 1.4 36 33-68 116-156 (443)
430 3trf_A Shikimate kinase, SK; a 21.0 38 0.0013 30.3 1.9 23 50-72 6-28 (185)
431 3la6_A Tyrosine-protein kinase 20.9 44 0.0015 32.8 2.4 23 54-76 98-120 (286)
432 3bgw_A DNAB-like replicative h 20.8 45 0.0015 35.2 2.6 24 52-75 200-223 (444)
433 2chq_A Replication factor C sm 20.6 58 0.002 32.0 3.4 24 50-73 39-62 (319)
434 2lqo_A Putative glutaredoxin R 20.6 2.4E+02 0.0081 22.0 6.3 45 571-615 4-49 (92)
435 3tg1_B Dual specificity protei 20.5 57 0.002 28.5 2.9 35 570-604 93-136 (158)
436 1in4_A RUVB, holliday junction 20.3 90 0.0031 31.2 4.7 40 32-71 31-73 (334)
437 2oap_1 GSPE-2, type II secreti 20.3 69 0.0024 34.4 4.0 37 32-72 247-283 (511)
438 3io3_A DEHA2D07832P; chaperone 20.2 44 0.0015 33.9 2.3 23 52-74 21-43 (348)
439 1qtn_A Caspase-8; apoptosis, d 20.1 3.8E+02 0.013 23.5 8.2 46 582-628 56-105 (164)
440 3ez2_A Plasmid partition prote 20.1 39 0.0013 35.0 1.9 22 53-74 113-134 (398)
441 2xj4_A MIPZ; replication, cell 20.1 43 0.0015 32.7 2.2 24 53-76 9-32 (286)
442 2ce7_A Cell division protein F 20.0 39 0.0013 36.0 2.0 23 49-71 49-71 (476)
No 1
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.5e-67 Score=597.83 Aligned_cols=501 Identities=26% Similarity=0.330 Sum_probs=393.1
Q ss_pred CCCCCccCChHHHHHHHHHHHHhcc----CCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCC
Q 004925 22 DPPDLITPLLRYQKEWLAWALKQEE----SAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIK 97 (723)
Q Consensus 22 ~p~~~~~~L~p~Q~~~~~~~~~~~~----~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (723)
.+|.+...|+|||++++.||+.... ...+||||||+||+|||+++|+++...+..... ..+..+
T Consensus 48 ~~p~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~------------~~p~~~ 115 (644)
T 1z3i_X 48 VDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD------------CKPEID 115 (644)
T ss_dssp CCHHHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT------------SSCSCS
T ss_pred eChhhhhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc------------ccCCCC
Confidence 3566778999999999999987653 233789999999999999999999876544321 112346
Q ss_pred ceEEEechhhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc----------ccCCCCEEEechhhhHHhhhhccCCCcc
Q 004925 98 ATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAK----------QFSEFDFVITTYSIIEADYRKHVMPPKQ 167 (723)
Q Consensus 98 ~~LIv~P~~l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~~~ivi~t~~~l~~~~~~~~~~~~~ 167 (723)
++|||||.+++.||.+|+.+|++. ...++.+++..+..... ....++|+|+||++++....
T Consensus 116 ~~LiV~P~sll~qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~-------- 186 (644)
T 1z3i_X 116 KVIVVSPSSLVRNWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE-------- 186 (644)
T ss_dssp CEEEEECHHHHHHHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--------
T ss_pred cEEEEecHHHHHHHHHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--------
Confidence 899999999999999999999974 45566666543221110 01247899999999986632
Q ss_pred cccccCccchhhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEE
Q 004925 168 KCQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERI 247 (723)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v 247 (723)
.+....|++|
T Consensus 187 ----------------------------------------------------------------------~l~~~~~~~v 196 (644)
T 1z3i_X 187 ----------------------------------------------------------------------VLHKGKVGLV 196 (644)
T ss_dssp ----------------------------------------------------------------------TTTTSCCCEE
T ss_pred ----------------------------------------------------------------------HhhcCCccEE
Confidence 3555689999
Q ss_pred EeeccccccCCCcHHHHHHHhhhcCceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCcccccCCCCCCCCCCCCC
Q 004925 248 ILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHN 327 (723)
Q Consensus 248 IiDEaH~~kn~~s~~~~~l~~l~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (723)
|+||||+++|..++.++++..+.+.++|+|||||++|++.|+|++++++++..++
T Consensus 197 I~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~------------------------- 251 (644)
T 1z3i_X 197 ICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILG------------------------- 251 (644)
T ss_dssp EETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHC-------------------------
T ss_pred EEECceecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCC-------------------------
Confidence 9999999999999999999999999999999999999999999999999976654
Q ss_pred CccchhhhhhhccccccccCCCcchh------HHHHHHHHHHhHhHhhhhccCCcccccCCCCceEEEEEecCCHHHHHH
Q 004925 328 SVRHFCWWNRYVATPIQTHGNSYGGR------RAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADY 401 (723)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~~~~rr~~~~~~~~~~lp~~~~~~~~~~l~~~~~~~ 401 (723)
.+..|.+.+..++..+....... ......+..++.++++||++.++... +|++.+..+.++|++.|+++
T Consensus 252 ---~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~--LP~k~~~~v~~~ls~~q~~l 326 (644)
T 1z3i_X 252 ---TAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKY--LPVKIEQVVCCNLTPLQKEL 326 (644)
T ss_dssp ---CHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGT--SCCEEEEEEEECCCHHHHHH
T ss_pred ---CHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhh--CCCceEEEEEeCCCHHHHHH
Confidence 34567777777765544332211 12244567889999999999887765 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhccCcccccccccccccCCCccccccccccccccccCCCCCcc
Q 004925 402 YESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVV 481 (723)
Q Consensus 402 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (723)
|+.+........ ...........+..+..+|++|+||.++........... . .+.+.
T Consensus 327 Y~~~~~~~~~~~-----~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~-~-----------~~~~~------ 383 (644)
T 1z3i_X 327 YKLFLKQAKPVE-----SLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGF-D-----------GALDL------ 383 (644)
T ss_dssp HHHHHHHHCGGG-----SSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTC-T-----------TGGGT------
T ss_pred HHHHHHHHHHHH-----HHhcCccchhHHHHHHHHHHHhCCHHHHHHHHhcccchh-h-----------hHHhh------
Confidence 998876543210 111112335678889999999999998743211000000 0 00000
Q ss_pred cccCCccchhhhhhhhcCcCCCCCCCCCCCcccccccccCCCCCCccccccCCccccchhhccccccCcchHHHHHHHHH
Q 004925 482 TNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEI 561 (723)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l 561 (723)
.| . .+ .........|+|+..+..++
T Consensus 384 -----------------------~~---------------------~----~~-------~~~~~~~~~s~K~~~l~~ll 408 (644)
T 1z3i_X 384 -----------------------FP---------------------Q----NY-------STKAVEPQLSGKMLVLDYIL 408 (644)
T ss_dssp -----------------------SC---------------------S----SC-------CSSSCCGGGSHHHHHHHHHH
T ss_pred -----------------------cc---------------------c----cc-------cccccCcccChHHHHHHHHH
Confidence 00 0 00 00001123578999988888
Q ss_pred HHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCC-ceEEEEecCCCcccccccc
Q 004925 562 RFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPD-CKIFLMSLKAGGVALNLTV 640 (723)
Q Consensus 562 ~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~-~~vll~s~~~~~eGlnL~~ 640 (723)
..+. ..+++|+||||++..+++.|+.+|...|+.+..++|+++.++|+.++++|++++. ..++|++++++++||||+.
T Consensus 409 ~~~~-~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~ 487 (644)
T 1z3i_X 409 AMTR-TTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIG 487 (644)
T ss_dssp HHHH-HHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTT
T ss_pred HHHh-hcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCccccc
Confidence 7764 2457899999999999999999999999999999999999999999999998644 4588999999999999999
Q ss_pred cCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHhhcccCCCccccCCCCHHHHHhh
Q 004925 641 ASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFL 720 (723)
Q Consensus 641 a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~l 720 (723)
|++||+||++|||..+.||+||++|+||+++|+||+|++.+|+||.|++++..|..+++.++++.......++.++++.|
T Consensus 488 a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~~~~~~~~~~~l~~L 567 (644)
T 1z3i_X 488 ANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELREL 567 (644)
T ss_dssp EEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSSCCCSSCHHHHHHH
T ss_pred CCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHHHHHHHhcCcchhhcCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988777889999999999
Q ss_pred hc
Q 004925 721 FV 722 (723)
Q Consensus 721 ~~ 722 (723)
|.
T Consensus 568 f~ 569 (644)
T 1z3i_X 568 FS 569 (644)
T ss_dssp TC
T ss_pred hC
Confidence 85
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-66 Score=606.71 Aligned_cols=477 Identities=25% Similarity=0.427 Sum_probs=374.1
Q ss_pred CccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEech
Q 004925 26 LITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV 105 (723)
Q Consensus 26 ~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~ 105 (723)
....|+|||++++.||+.....+ +||||||+||+|||+++|+++..+...... .+++|||||.
T Consensus 233 ~~~~Lr~yQ~egv~~l~~~~~~~-~~~ILademGlGKT~~ai~~i~~l~~~~~~----------------~~~~LIV~P~ 295 (800)
T 3mwy_W 233 KGGELRDFQLTGINWMAFLWSKG-DNGILADEMGLGKTVQTVAFISWLIFARRQ----------------NGPHIIVVPL 295 (800)
T ss_dssp CSSCCCTHHHHHHHHHHHHHTTT-CCEEECCCTTSSTTHHHHHHHHHHHHHHSC----------------CSCEEEECCT
T ss_pred CCCCcCHHHHHHHHHHHHHhhcC-CCEEEEeCCCcchHHHHHHHHHHHHHhcCC----------------CCCEEEEECc
Confidence 35699999999999999877777 899999999999999999999876543322 2799999999
Q ss_pred hhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc--------------cccCCCCEEEechhhhHHhhhhccCCCcccccc
Q 004925 106 AAVTQWVSEINRFTSVGSTKVLIYHGSNRERSA--------------KQFSEFDFVITTYSIIEADYRKHVMPPKQKCQY 171 (723)
Q Consensus 106 ~l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~--------------~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~ 171 (723)
+++.||..|+.+|++ .+.+.+++|....+.. .....++|+|+||+++......
T Consensus 296 sll~qW~~E~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~----------- 362 (800)
T 3mwy_W 296 STMPAWLDTFEKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE----------- 362 (800)
T ss_dssp TTHHHHHHHHHHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH-----------
T ss_pred hHHHHHHHHHHHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH-----------
Confidence 999999999999998 7889999987643311 2345788999999999776432
Q ss_pred cCccchhhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeec
Q 004925 172 CGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDE 251 (723)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDE 251 (723)
+....|++|||||
T Consensus 363 -------------------------------------------------------------------l~~~~w~~vIvDE 375 (800)
T 3mwy_W 363 -------------------------------------------------------------------LGSIKWQFMAVDE 375 (800)
T ss_dssp -------------------------------------------------------------------HHTSEEEEEEETT
T ss_pred -------------------------------------------------------------------HhcCCcceeehhh
Confidence 5566899999999
Q ss_pred cccccCCCcHHHHHHHhhhcCceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCcccccCCCCCCCCCCCCCCccc
Q 004925 252 AHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRH 331 (723)
Q Consensus 252 aH~~kn~~s~~~~~l~~l~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (723)
||+++|.+++.++++..+.+++||+|||||++|++.|+|+++++|.|..|....
T Consensus 376 aH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~-------------------------- 429 (800)
T 3mwy_W 376 AHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQ-------------------------- 429 (800)
T ss_dssp GGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC------------------------------
T ss_pred hhhhcCchhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchh--------------------------
Confidence 999999999999999999999999999999999999999999999988764321
Q ss_pred hhhhhhhccccccccCCCcchhHHHHHHHHHHhHhHhhhhccCCcccccCCCCceEEEEEecCCHHHHHHHHHHHHHHHH
Q 004925 332 FCWWNRYVATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQA 411 (723)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~~~lp~~~~~~~~~~l~~~~~~~y~~~~~~~~~ 411 (723)
.|.. .............++.++.++++||++.++... +|++.+..+.++|++.|+..|+.+......
T Consensus 430 --~~~~---------~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~--LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~ 496 (800)
T 3mwy_W 430 --EIDF---------ENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKS--LPSKTERILRVELSDVQTEYYKNILTKNYS 496 (800)
T ss_dssp ----------------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTT--SCCEEEEEEEECCCHHHHHHHHHHHHHCCC
T ss_pred --hhcc---------cccchhHHHHHHHHHHHHhHHHhhhhHHhhhhc--cCCcEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 0100 001112233455678899999999999998776 999999999999999999999998876444
Q ss_pred HHHHHHHhccccccHHHHHHHHHHHHhhccCcccccccccccccCCCccccccccccccccccCCCCCcccccCCccchh
Q 004925 412 QFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKA 491 (723)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (723)
.+..... .....++..+..+|++|+||+++.............
T Consensus 497 ~l~~~~~-----~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~-------------------------------- 539 (800)
T 3mwy_W 497 ALTAGAK-----GGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGD-------------------------------- 539 (800)
T ss_dssp ---------------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----------------------------------
T ss_pred HHhhccc-----cchhhHHHHHHHHHHHhcChhhhcchHHHHHHhccc--------------------------------
Confidence 3322111 122357889999999999999874322111000000
Q ss_pred hhhhhhcCcCCCCCCCCCCCcccccccccCCCCCCccccccCCccccchhhccccccCcchHHHHHHHHHHHHHhhcCCc
Q 004925 492 CLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSA 571 (723)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~ 571 (723)
........ .......|+|+..|.++|..+ ...++
T Consensus 540 ----------------------------------------~~~~~~~~----~~~l~~~s~K~~~L~~lL~~~--~~~g~ 573 (800)
T 3mwy_W 540 ----------------------------------------GKMTRENV----LRGLIMSSGKMVLLDQLLTRL--KKDGH 573 (800)
T ss_dssp ------------------------------------------CCSHHH----HHHHHHTCHHHHHHHHHHHHH--TTTTC
T ss_pred ----------------------------------------ccccHHHH----HHHhhhcChHHHHHHHHHHHH--hhCCC
Confidence 00000000 011124589999999999988 45678
Q ss_pred eEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCC-CCceEEEEecCCCcccccccccCEEEEECCC
Q 004925 572 KGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTED-PDCKIFLMSLKAGGVALNLTVASHVFLMDPW 650 (723)
Q Consensus 572 KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~-~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~ 650 (723)
|+||||++..+++.|..+|...|+++..++|+++..+|+.++++|+++ ....++|++++++++||||+.|++||+||++
T Consensus 574 kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~ 653 (800)
T 3mwy_W 574 RVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSD 653 (800)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCC
T ss_pred eEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCC
Confidence 999999999999999999999999999999999999999999999984 3456899999999999999999999999999
Q ss_pred CChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHhhcccCCCcc------ccCCCCHHHHHhhh
Q 004925 651 WNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSAD------AFGKLTEADMRFLF 721 (723)
Q Consensus 651 wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~~~~~~~~~~~------~~~~~~~~~~~~l~ 721 (723)
|||..+.||+||++|+||+++|+||+|++++|+||.|++++..|..+.++++++... .-..++..++..|+
T Consensus 654 wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll 730 (800)
T 3mwy_W 654 WNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAIL 730 (800)
T ss_dssp SCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC----------------CCCCHHHHHHHH
T ss_pred CChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHccCcccccccccccCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999874321 12466788888776
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=3.5e-65 Score=571.11 Aligned_cols=463 Identities=30% Similarity=0.507 Sum_probs=387.3
Q ss_pred CCCCccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEE
Q 004925 23 PPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVI 102 (723)
Q Consensus 23 p~~~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv 102 (723)
|++++..|+|||++++.|+......+ +|+||+|+||+|||+++++++........ .+++|||
T Consensus 31 p~~~~~~L~~~Q~~~v~~l~~~~~~~-~~~ilad~~GlGKT~~ai~~i~~~~~~~~-----------------~~~~LIv 92 (500)
T 1z63_A 31 PYNIKANLRPYQIKGFSWMRFMNKLG-FGICLADDMGLGKTLQTIAVFSDAKKENE-----------------LTPSLVI 92 (500)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHHHTT-CCEEECCCTTSCHHHHHHHHHHHHHHTTC-----------------CSSEEEE
T ss_pred ChhhhccchHHHHHHHHHHHHHhhCC-CCEEEEeCCCCcHHHHHHHHHHHHHhcCC-----------------CCCEEEE
Confidence 88899999999999999998766666 79999999999999999998887654322 2799999
Q ss_pred echhhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccccCCCCEEEechhhhHHhhhhccCCCcccccccCccchhhhhh
Q 004925 103 CPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLV 182 (723)
Q Consensus 103 ~P~~l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (723)
||.+|+.||.+|+.+|++ ..++.+++|.... .....++|+|+||+++.....
T Consensus 93 ~P~~l~~qw~~e~~~~~~--~~~v~~~~g~~~~---~~~~~~~ivi~t~~~l~~~~~----------------------- 144 (500)
T 1z63_A 93 CPLSVLKNWEEELSKFAP--HLRFAVFHEDRSK---IKLEDYDIILTTYAVLLRDTR----------------------- 144 (500)
T ss_dssp ECSTTHHHHHHHHHHHCT--TSCEEECSSSTTS---CCGGGSSEEEEEHHHHTTCHH-----------------------
T ss_pred ccHHHHHHHHHHHHHHCC--CceEEEEecCchh---ccccCCcEEEeeHHHHhccch-----------------------
Confidence 999999999999999997 6788888887632 345678999999999864421
Q ss_pred hhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccccccCCCcHH
Q 004925 183 VHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNT 262 (723)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~ 262 (723)
+....|++||+||||+++|..++.
T Consensus 145 --------------------------------------------------------l~~~~~~~vIvDEaH~~kn~~~~~ 168 (500)
T 1z63_A 145 --------------------------------------------------------LKEVEWKYIVIDEAQNIKNPQTKI 168 (500)
T ss_dssp --------------------------------------------------------HHTCCEEEEEEETGGGGSCTTSHH
T ss_pred --------------------------------------------------------hcCCCcCEEEEeCccccCCHhHHH
Confidence 334579999999999999999999
Q ss_pred HHHHHhhhcCceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCcccccCCCCCCCCCCCCCCccchhhhhhhcccc
Q 004925 263 AKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATP 342 (723)
Q Consensus 263 ~~~l~~l~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (723)
++++..+.++++|+|||||+.|++.|+|+++++|++..++ .+..|...+..+
T Consensus 169 ~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~----------------------------~~~~f~~~~~~~ 220 (500)
T 1z63_A 169 FKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLG----------------------------SYSEFKSKFATP 220 (500)
T ss_dssp HHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTC----------------------------CHHHHHTTTHHH
T ss_pred HHHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCC----------------------------CHHHHHHHhccc
Confidence 9999999999999999999999999999999999977654 345666666655
Q ss_pred ccccCCCcchhHHHHHHHHHHhHhHhhhhccCCcccccCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 004925 343 IQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTV 422 (723)
Q Consensus 343 ~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~~~lp~~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 422 (723)
+..+. ......+..++.++++||++.+......+|++....+.++|++.|...|+.+.......+. ....
T Consensus 221 ~~~~~------~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~----~~~~ 290 (500)
T 1z63_A 221 IKKGD------NMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNID----SVTG 290 (500)
T ss_dssp HHTTC------HHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTT----TCCT
T ss_pred ccccc------HHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHH----hhhc
Confidence 54422 2234456788999999999876333335999999999999999999999987765432211 1112
Q ss_pred cccHHHHHHHHHHHHhhccCcccccccccccccCCCccccccccccccccccCCCCCcccccCCccchhhhhhhhcCcCC
Q 004925 423 MNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFV 502 (723)
Q Consensus 423 ~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (723)
......++..+.++|++|.||.+.....
T Consensus 291 ~~~~~~~~~~l~~lr~~~~~p~l~~~~~---------------------------------------------------- 318 (500)
T 1z63_A 291 IKRKGMILSTLLKLKQIVDHPALLKGGE---------------------------------------------------- 318 (500)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHCSC----------------------------------------------------
T ss_pred ccchHHHHHHHHHHHHHhCCHHHhcCcc----------------------------------------------------
Confidence 2334567888999999999998753110
Q ss_pred CCCCCCCCCcccccccccCCCCCCccccccCCccccchhhccccccCcchHHHHHHHHHHHHHhhcCCceEEEEcccHhH
Q 004925 503 AKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSF 582 (723)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~ 582 (723)
.....++|+..+.++|.+.. .+++|+|||+++..+
T Consensus 319 -------------------------------------------~~~~~s~K~~~l~~~l~~~~--~~~~k~lvF~~~~~~ 353 (500)
T 1z63_A 319 -------------------------------------------QSVRRSGKMIRTMEIIEEAL--DEGDKIAIFTQFVDM 353 (500)
T ss_dssp -------------------------------------------CCSTTCHHHHHHHHHHHHHH--TTTCCEEEECSCHHH
T ss_pred -------------------------------------------chhhcchhHHHHHHHHHHHH--ccCCcEEEEEehHHH
Confidence 01244789999999999885 467899999999999
Q ss_pred HHHHHHHHHhC-CCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEECCCCChhhHHHHHH
Q 004925 583 LDLINYSLHKS-GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQD 661 (723)
Q Consensus 583 ~~~l~~~L~~~-g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iG 661 (723)
++.|...|... |+.+..++|+++..+|+.++++|++++++.++|++++++++|+||+.|++||++|++|||..+.|++|
T Consensus 354 ~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~g 433 (500)
T 1z63_A 354 GKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATD 433 (500)
T ss_dssp HHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHH
T ss_pred HHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHH
Confidence 99999999986 99999999999999999999999998778888999999999999999999999999999999999999
Q ss_pred hhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHhhcccCCCccccCCCCHHHHHhhhc
Q 004925 662 RIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLFV 722 (723)
Q Consensus 662 Ri~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 722 (723)
|++|+||+++|+||+|++++|+||.|++++..|..+++.++++.......++.+|++.||.
T Consensus 434 R~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 494 (500)
T 1z63_A 434 RVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIE 494 (500)
T ss_dssp TTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGGSTTGGGGSSCHHHHHHHHS
T ss_pred HHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcCcchhccCCHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999888899999999999985
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1e-46 Score=447.27 Aligned_cols=472 Identities=20% Similarity=0.225 Sum_probs=322.3
Q ss_pred CCCCCccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEE
Q 004925 22 DPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLV 101 (723)
Q Consensus 22 ~p~~~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LI 101 (723)
...+....|+|||++++.|++... . +++||||+||+|||++|+.++......+. .+++||
T Consensus 146 ~l~~~~~~LrpyQ~eav~~~l~~~--~-~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-----------------~~rvLI 205 (968)
T 3dmq_A 146 GLRGQRTSLIPHQLNIAHDVGRRH--A-PRVLLADEVGLGKTIEAGMILHQQLLSGA-----------------AERVLI 205 (968)
T ss_dssp SSSCCSSCCCHHHHHHHHHHHHSS--S-CEEEECCCTTSCHHHHHHHHHHHHHHTSS-----------------CCCEEE
T ss_pred cccCCCCCCcHHHHHHHHHHHHhc--C-CCEEEECCCCCcHHHHHHHHHHHHHHhCC-----------------CCeEEE
Confidence 344567899999999999998754 2 67899999999999999998877654332 268999
Q ss_pred EechhhHHHHHHHHHhhcCCCCcEEEEEeCCCCC----CCccccCCCCEEEechhhhHHhhhhccCCCcccccccCccch
Q 004925 102 ICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRE----RSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFY 177 (723)
Q Consensus 102 v~P~~l~~qW~~ei~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~~~ 177 (723)
|||.+|+.||..|+.++++ ..+.+++|.... .....+..++|+|+||+.+......
T Consensus 206 VvP~sLl~Qw~~E~~~~f~---l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~----------------- 265 (968)
T 3dmq_A 206 IVPETLQHQWLVEMLRRFN---LRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQR----------------- 265 (968)
T ss_dssp ECCTTTHHHHHHHHHHHSC---CCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTT-----------------
T ss_pred EeCHHHHHHHHHHHHHHhC---CCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHH-----------------
Confidence 9999999999999988884 556666664311 1224456789999999998654210
Q ss_pred hhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccccccC
Q 004925 178 QKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKD 257 (723)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~kn 257 (723)
...+....|++|||||||+++|
T Consensus 266 ----------------------------------------------------------~~~l~~~~~dlVIvDEAH~~kn 287 (968)
T 3dmq_A 266 ----------------------------------------------------------LEHLCEAEWDLLVVDEAHHLVW 287 (968)
T ss_dssp ----------------------------------------------------------THHHHTSCCCEEEECCSSCCCC
T ss_pred ----------------------------------------------------------HHHhhhcCCCEEEehhhHhhcC
Confidence 0124455799999999999998
Q ss_pred CCcH---HHHHHHhh--hcCceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCccc----ccCCCCCCCCCCCCCC
Q 004925 258 RRSN---TAKAVLAL--ESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCK----VLDYSSAECPNCPHNS 328 (723)
Q Consensus 258 ~~s~---~~~~l~~l--~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 328 (723)
..+. .++.+..+ .++++|+|||||++|++.|+|++++++.+..+........... ............ .-.
T Consensus 288 ~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~-~~~ 366 (968)
T 3dmq_A 288 SEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGN-KLS 366 (968)
T ss_dssp BTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSC-CCC
T ss_pred CCCcchHHHHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccC-CCC
Confidence 7644 47788888 6788999999999999999999999999887764321100000 000000000000 000
Q ss_pred ccchhhhhhhcc----ccccccCC--CcchhHHHHHHHHHHhH-----hHhhhhccCCcccccCCCCceEEEEEecCCHH
Q 004925 329 VRHFCWWNRYVA----TPIQTHGN--SYGGRRAMILLKHKVLR-----SVILRRTKKGRAADLALPPRIVSLRRDSLDIR 397 (723)
Q Consensus 329 ~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~l~~~l~-----~~~~rr~~~~~~~~~~lp~~~~~~~~~~l~~~ 397 (723)
......+...+. .++..... ...........+..++. .+++|+++..+. .+|.+....+.+++++.
T Consensus 367 ~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~---~~p~r~~~~~~l~~~~~ 443 (968)
T 3dmq_A 367 NDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVK---GFPKRELHTIKLPLPTQ 443 (968)
T ss_dssp GGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCC---CCCCCCCCEEEECCCHH
T ss_pred HHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhc---ccChhheEeeecCCCHH
Confidence 000000000000 00000000 00011122223333332 345555565543 38888888899999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhccCcccccccccccccCCCccccccccccccccccCCC
Q 004925 398 EADYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLAD 477 (723)
Q Consensus 398 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (723)
....|+..... ........ ....+.+|......
T Consensus 444 ~~~~~~~~~~~---------~~~~~~~~----------~~~~~l~pe~~~~~---------------------------- 476 (968)
T 3dmq_A 444 YQTAIKVSGIM---------GARKSAED----------RARDMLYPERIYQE---------------------------- 476 (968)
T ss_dssp HHHHHHHHHHT---------TCCSSGGG----------GTHHHHCSGGGTTT----------------------------
T ss_pred HHHHHHHHhhh---------hhhhhhHH----------HHhhhcChHHHHHH----------------------------
Confidence 88877532110 00000000 00000011000000
Q ss_pred CCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcccccccccCCCCCCccccccCCccccchhhccccccCcchHHHHH
Q 004925 478 DPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEAL 557 (723)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l 557 (723)
...........++|+..+
T Consensus 477 --------------------------------------------------------------l~~~~~~~~~~~~K~~~L 494 (968)
T 3dmq_A 477 --------------------------------------------------------------FEGDNATWWNFDPRVEWL 494 (968)
T ss_dssp --------------------------------------------------------------TTSSSCCTTTTSHHHHHH
T ss_pred --------------------------------------------------------------hhhhhhcccCccHHHHHH
Confidence 000001123557899999
Q ss_pred HHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHh-CCCeEEEeecCCCHHHHHHHHHhhcCCC-CceEEEEecCCCccc
Q 004925 558 REEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK-SGVNCVQLVGSMSIPARDAAINRFTEDP-DCKIFLMSLKAGGVA 635 (723)
Q Consensus 558 ~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~-~g~~~~~i~g~~~~~~r~~~i~~F~~~~-~~~vll~s~~~~~eG 635 (723)
.+++.. .++.|+||||++..+++.|...|.. .|+++..++|+++..+|..++++|+++. .++||| +|.++++|
T Consensus 495 ~~ll~~----~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLv-aT~v~~~G 569 (968)
T 3dmq_A 495 MGYLTS----HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLL-CSEIGSEG 569 (968)
T ss_dssp HHHHHH----TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEE-CSCCTTCS
T ss_pred HHHHHh----CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEE-ecchhhcC
Confidence 999985 4678999999999999999999995 5999999999999999999999999874 366655 66999999
Q ss_pred ccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHhhcccCCCcccc
Q 004925 636 LNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAF 709 (723)
Q Consensus 636 lnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~~~~~~~~~~~~~ 709 (723)
+|++.|++||++|++||+..+.|++||++|.||++.|.+|+++.++|+|+.|++.+.+|..+++..+.+....+
T Consensus 570 lDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~~~~~i~ 643 (968)
T 3dmq_A 570 RNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIY 643 (968)
T ss_dssp SCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCSSHHHHH
T ss_pred CCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCceecCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998887776544433
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.5e-41 Score=376.88 Aligned_cols=452 Identities=15% Similarity=0.165 Sum_probs=277.2
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEech-h
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-A 106 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~-~ 106 (723)
..|+|||.+++.+++. +++||+++||+|||++++.++....... .+++|||||. .
T Consensus 8 ~~l~~~Q~~~i~~~~~------~~~ll~~~tG~GKT~~~~~~~~~~~~~~------------------~~~~liv~P~~~ 63 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE------TNCLIVLPTGLGKTLIAMMIAEYRLTKY------------------GGKVLMLAPTKP 63 (494)
T ss_dssp HCCCHHHHHHHHHGGG------SCEEEECCTTSCHHHHHHHHHHHHHHHS------------------CSCEEEECSSHH
T ss_pred CCccHHHHHHHHHHhh------CCEEEEcCCCCCHHHHHHHHHHHHHhcC------------------CCeEEEEECCHH
Confidence 4899999999999876 3889999999999999998887654411 2689999995 8
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc-cccCCCCEEEechhhhHHhhhhccCCCcccccccCccchhhhhhhhh
Q 004925 107 AVTQWVSEINRFTSVGSTKVLIYHGSNRERSA-KQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHL 185 (723)
Q Consensus 107 l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (723)
|+.||.+++.++++.....+..++|....... ..+..++|+|+||+.+...+...
T Consensus 64 L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~------------------------ 119 (494)
T 1wp9_A 64 LVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAG------------------------ 119 (494)
T ss_dssp HHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTT------------------------
T ss_pred HHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcC------------------------
Confidence 99999999999986446688999987654322 22356899999999998765421
Q ss_pred hhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccccccCCCcHH--H
Q 004925 186 KYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNT--A 263 (723)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~--~ 263 (723)
.+....|++|||||||++++..+.. .
T Consensus 120 ----------------------------------------------------~~~~~~~~~vIiDEaH~~~~~~~~~~~~ 147 (494)
T 1wp9_A 120 ----------------------------------------------------RISLEDVSLIVFDEAHRAVGNYAYVFIA 147 (494)
T ss_dssp ----------------------------------------------------SCCTTSCSEEEEETGGGCSTTCHHHHHH
T ss_pred ----------------------------------------------------CcchhhceEEEEECCcccCCCCcHHHHH
Confidence 1233468999999999998754221 1
Q ss_pred HHHHh-hhcCceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCcccccCCCCCCCCCCCCCCccchhhhhhhcccc
Q 004925 264 KAVLA-LESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATP 342 (723)
Q Consensus 264 ~~l~~-l~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (723)
..+.. ....++|+|||||. ++..++..++.+++........... ......+...
T Consensus 148 ~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~------------------------~~~~~~~~~~ 202 (494)
T 1wp9_A 148 REYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENS------------------------PDVRPYVKGI 202 (494)
T ss_dssp HHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTS------------------------TTTGGGCCCC
T ss_pred HHHHhcCCCCeEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCc------------------------HHHHHhcCCC
Confidence 12222 24678999999999 7788899999888754332110000 0000000000
Q ss_pred ccccCCCcchhHHHHHHHHHHhHhHhhhhccCCcccccCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHH-------
Q 004925 343 IQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNT------- 415 (723)
Q Consensus 343 ~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~~~lp~~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~------- 415 (723)
........... ....+...+...+.++.+...... .+++.. ..++......... .....+..
T Consensus 203 -~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 271 (494)
T 1wp9_A 203 -RFEWVRVDLPE-IYKEVRKLLREMLRDALKPLAETG-LLESSS-----PDIPKKEVLRAGQ---IINEEMAKGNHDLRG 271 (494)
T ss_dssp -CEEEEEECCCH-HHHHHHHHHHHHHHHHHHHHHHHT-SSSCCC-----TTSCHHHHHHHHH---HHHHHHTTTCCSTTT
T ss_pred -ceeEEecCCcH-HHHHHHHHHHHHHHHHHHHHHHhc-cccccC-----CCcchhHHHHHHH---HHHHHhhccccchhh
Confidence 00000000011 112223444555555554332221 121111 1111111100000 00000000
Q ss_pred ------------HHHhccccccHHHHHHHHHHHHhhccCcccccccccccccCCCccccccccccccccccCCCCCcccc
Q 004925 416 ------------YVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTN 483 (723)
Q Consensus 416 ------------~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (723)
.............+...+..+...+.++........ ..++.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------------------------~~~~~--- 324 (494)
T 1wp9_A 272 LLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEI------------------------FSDKR--- 324 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHH------------------------HTSHH---
T ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhh------------------------hhhHH---
Confidence 000000000111112222222222222110000000 00000
Q ss_pred cCCccchhhhhhhhcCcCCCCCCCCCCCcccccccccCCCCCCccccccCCccccchhhc--cccccCcchHHHHHHHHH
Q 004925 484 CGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRI--QLDEFQSSTKIEALREEI 561 (723)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~Kl~~l~~~l 561 (723)
. ....... .......++|+..+.++|
T Consensus 325 ---------~-------------------------------------------~~~~~~~~~~~~~~~~~~k~~~l~~~l 352 (494)
T 1wp9_A 325 ---------M-------------------------------------------KKAISLLVQAKEIGLDHPKMDKLKEII 352 (494)
T ss_dssp ---------H-------------------------------------------HHHHHHHHHHHHHTCSCHHHHHHHHHH
T ss_pred ---------H-------------------------------------------HHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 0 0000000 000114578999999999
Q ss_pred HHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeec--------CCCHHHHHHHHHhhcCCCCceEEEEecCCCc
Q 004925 562 RFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVG--------SMSIPARDAAINRFTEDPDCKIFLMSLKAGG 633 (723)
Q Consensus 562 ~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g--------~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~ 633 (723)
..+....++.|+|||+++..+++.|++.|...|+.+..++| +++..+|+.++++|+++ .+.|| ++|++++
T Consensus 353 ~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~-~~~vL-v~T~~~~ 430 (494)
T 1wp9_A 353 REQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARG-EFNVL-VATSVGE 430 (494)
T ss_dssp HHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHT-SCSEE-EECGGGG
T ss_pred HHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcC-CceEE-EECCccc
Confidence 99875567889999999999999999999999999999999 99999999999999986 56654 5669999
Q ss_pred ccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHhh
Q 004925 634 VALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFE 699 (723)
Q Consensus 634 eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~~~ 699 (723)
+|+||+.|++||+++++||+..+.|++||++|.|+ +.+|.|++++|+||.++.++..|...++
T Consensus 431 ~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 431 EGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp GGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred cCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC---ceEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999998 8899999999999999999999987765
No 6
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=1.6e-38 Score=321.95 Aligned_cols=253 Identities=29% Similarity=0.431 Sum_probs=195.9
Q ss_pred HhhhhccCCcccccCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhccCcccc
Q 004925 367 VILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLV 446 (723)
Q Consensus 367 ~~~rr~~~~~~~~~~lp~~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~ 446 (723)
.-+||+++++..+ ||++.+..+.++|++.|++.|+.+.......+. ..........++..++++|++|+||+++
T Consensus 12 ~~~rr~k~~v~~~--LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~----~~~~~~~~~~~l~~l~~Lrq~~~hP~l~ 85 (271)
T 1z5z_A 12 SGLVPRGSHMASD--LPDKIETNVYCNLTPEQAAMYKAEVENLFNNID----SVTGIKRKGMILSTLLKLKQIVDHPALL 85 (271)
T ss_dssp ------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHTTCTHHH
T ss_pred ccccccHHHHHhh--CCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHH----hccccchHHHHHHHHHHHHHHcCCHHHh
Confidence 3478999998877 999999999999999999999999876554432 1111223456789999999999999986
Q ss_pred cccccccccCCCccccccccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcccccccccCCCCCC
Q 004925 447 VYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRT 526 (723)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (723)
....
T Consensus 86 ~~~~---------------------------------------------------------------------------- 89 (271)
T 1z5z_A 86 KGGE---------------------------------------------------------------------------- 89 (271)
T ss_dssp HCSC----------------------------------------------------------------------------
T ss_pred cCCc----------------------------------------------------------------------------
Confidence 3100
Q ss_pred ccccccCCccccchhhccccccCcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhC-CCeEEEeecCCC
Q 004925 527 SKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS-GVNCVQLVGSMS 605 (723)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~-g~~~~~i~g~~~ 605 (723)
.....++|+..+.++|..+.+ +++|+||||++..+++.|..+|... |+++..++|+++
T Consensus 90 -------------------~~~~~s~K~~~L~~ll~~~~~--~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~ 148 (271)
T 1z5z_A 90 -------------------QSVRRSGKMIRTMEIIEEALD--EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELS 148 (271)
T ss_dssp -------------------CCSTTCHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSC
T ss_pred -------------------cccccCHHHHHHHHHHHHHHh--CCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCC
Confidence 012448899999999998854 5689999999999999999999985 999999999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHH
Q 004925 606 IPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEE 685 (723)
Q Consensus 606 ~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee 685 (723)
..+|+.++++|++++.+.|+|++++++++||||+.|++||+||++|||..+.||+||++|+||+++|+||+|++.+|+||
T Consensus 149 ~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe 228 (271)
T 1z5z_A 149 KKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 228 (271)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHH
Confidence 99999999999998788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCccccCCCCHHHHHhhhc
Q 004925 686 RILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLFV 722 (723)
Q Consensus 686 ~~~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 722 (723)
.|++++..|..+++.++++.......++.+|++.||.
T Consensus 229 ~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 265 (271)
T 1z5z_A 229 KIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIE 265 (271)
T ss_dssp HHHHHHHHCHHHHTTGGGGTTHHHHTSCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHccCchhhhcCCHHHHHHHhc
Confidence 9999999999999999998877888999999999985
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=2.5e-37 Score=342.91 Aligned_cols=378 Identities=17% Similarity=0.148 Sum_probs=251.3
Q ss_pred CccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEech
Q 004925 26 LITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV 105 (723)
Q Consensus 26 ~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~ 105 (723)
....|+|||.+++.+++.. +++||+++||+|||++++.++... . +++|||||.
T Consensus 90 ~~~~l~~~Q~~ai~~i~~~-----~~~ll~~~TGsGKT~~~l~~i~~~----~------------------~~~Lvl~P~ 142 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLVD-----KRGCIVLPTGSGKTHVAMAAINEL----S------------------TPTLIVVPT 142 (472)
T ss_dssp CCCCBCHHHHHHHHHHTTT-----TEEEEECCTTSCHHHHHHHHHHHH----C------------------SCEEEEESS
T ss_pred CCCCcCHHHHHHHHHHHhc-----CCEEEEeCCCCCHHHHHHHHHHHc----C------------------CCEEEEECC
Confidence 3458999999999987764 568999999999999998887753 1 689999996
Q ss_pred -hhHHHHHHHHHhhcCCCCcE-EEEEeCCCCCCCccccCCCCEEEechhhhHHhhhhccCCCcccccccCccchhhhhhh
Q 004925 106 -AAVTQWVSEINRFTSVGSTK-VLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVV 183 (723)
Q Consensus 106 -~l~~qW~~ei~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (723)
.|+.||.+++.+| ... +..++|..+. ..+|+|+||+.+.......
T Consensus 143 ~~L~~Q~~~~~~~~----~~~~v~~~~g~~~~-------~~~Ivv~T~~~l~~~~~~~---------------------- 189 (472)
T 2fwr_A 143 LALAEQWKERLGIF----GEEYVGEFSGRIKE-------LKPLTVSTYDSAYVNAEKL---------------------- 189 (472)
T ss_dssp HHHHHHHHHHGGGG----CGGGEEEBSSSCBC-------CCSEEEEEHHHHHHTHHHH----------------------
T ss_pred HHHHHHHHHHHHhC----CCcceEEECCCcCC-------cCCEEEEEcHHHHHHHHHh----------------------
Confidence 8999999999994 356 7888886643 3589999999986553210
Q ss_pred hhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccccccCCCcHHH
Q 004925 184 HLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTA 263 (723)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~ 263 (723)
...|++|||||+|++.+....
T Consensus 190 ---------------------------------------------------------~~~~~liIvDEaH~~~~~~~~-- 210 (472)
T 2fwr_A 190 ---------------------------------------------------------GNRFMLLIFDEVHHLPAESYV-- 210 (472)
T ss_dssp ---------------------------------------------------------TTTCSEEEEETGGGTTSTTTH--
T ss_pred ---------------------------------------------------------cCCCCEEEEECCcCCCChHHH--
Confidence 114899999999999887644
Q ss_pred HHHHhhhcCceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCcccccCCCCCCCCCCCCCCccchhhhhhhccccc
Q 004925 264 KAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPI 343 (723)
Q Consensus 264 ~~l~~l~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (723)
..+..+.+.++++|||||..++..+ ..+..++
T Consensus 211 ~~~~~~~~~~~l~lSATp~~~~~~~-~~l~~~~----------------------------------------------- 242 (472)
T 2fwr_A 211 QIAQMSIAPFRLGLTATFEREDGRH-EILKEVV----------------------------------------------- 242 (472)
T ss_dssp HHHHTCCCSEEEEEESCCCCTTSGG-GSHHHHT-----------------------------------------------
T ss_pred HHHHhcCCCeEEEEecCccCCCCHH-HHHHHHh-----------------------------------------------
Confidence 3555567889999999998654221 0111122
Q ss_pred cccCCCcchhHHHHHHHHHHhHhHhhhhccCCcccccCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 004925 344 QTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTVM 423 (723)
Q Consensus 344 ~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~~~lp~~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 423 (723)
++.+.+....++. ...+++.....+.+++++.+...|+.+.......
T Consensus 243 ---------------------~~~~~~~~~~~l~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 289 (472)
T 2fwr_A 243 ---------------------GGKVFELFPDSLA-GKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQF----------- 289 (472)
T ss_dssp ---------------------CCEEEECCHHHHT-SCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSC-----------
T ss_pred ---------------------CCeEeecCHHHHh-cCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHH-----------
Confidence 2222222211111 1125666667788899999988876554322110
Q ss_pred ccHHHHHHHHHHHHhhccCcccccccccccccCCCccccccccccccccccCCCCCcccccCCccchhhhhhhhcCcCCC
Q 004925 424 NNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVA 503 (723)
Q Consensus 424 ~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (723)
.....+... .. ...... ..| ..
T Consensus 290 ----------------l~~~~~~~~---------~~---~~~~~~-------------~~~-----------------~~ 311 (472)
T 2fwr_A 290 ----------------LRARGITLR---------RA---EDFNKI-------------VMA-----------------SG 311 (472)
T ss_dssp ----------------SSSCCCTTT---------CC---SSSTTT-------------TTT-----------------TC
T ss_pred ----------------HHhcCcccc---------ch---hhHHHH-------------HHH-----------------hc
Confidence 000000000 00 000000 000 00
Q ss_pred CCCCCCCCcccccccccCCCCCCccccccCCccccchhhccccccCcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHH
Q 004925 504 KCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFL 583 (723)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~ 583 (723)
.++.+...+ .............+.|+..+.+++.. ..+.|+|||+++...+
T Consensus 312 ~~~~~~~~~-------------------------~~~~~~~~~~~~~~~k~~~l~~~l~~----~~~~k~lvF~~~~~~~ 362 (472)
T 2fwr_A 312 YDERAYEAL-------------------------RAWEEARRIAFNSKNKIRKLREILER----HRKDKIIIFTRHNELV 362 (472)
T ss_dssp CSSSSSTTT-------------------------HHHHHHHHHHHSCSHHHHHHHHHHHH----TSSSCBCCBCSCHHHH
T ss_pred cCHHHHHHH-------------------------HHHHHHHHHhhcChHHHHHHHHHHHh----CCCCcEEEEECCHHHH
Confidence 000000000 00000111123457899999888875 4678999999999999
Q ss_pred HHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEECCCCChhhHHHHHHhh
Q 004925 584 DLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRI 663 (723)
Q Consensus 584 ~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi 663 (723)
+.+.+.|. +..++|+++..+|+.++++|+++ .++|| ++|+++++|+|++.+++||+++++||+..+.|++||+
T Consensus 363 ~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g-~~~vL-v~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~ 435 (472)
T 2fwr_A 363 YRISKVFL-----IPAITHRTSREEREEILEGFRTG-RFRAI-VSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRI 435 (472)
T ss_dssp HHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHS-SCSBC-BCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHS
T ss_pred HHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCC-CCCEE-EEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhc
Confidence 99999984 45688999999999999999985 67765 5669999999999999999999999999999999999
Q ss_pred hhcCCc-ccEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 004925 664 HRIGQY-KPIRIVRFLIENTIEERILKLQEKKKLV 697 (723)
Q Consensus 664 ~R~Gq~-~~V~v~~l~~~~t~ee~~~~~~~~K~~~ 697 (723)
+|.|+. +.|.+|.|++++|+|+.+.++..+|...
T Consensus 436 ~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~ 470 (472)
T 2fwr_A 436 LRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKG 470 (472)
T ss_dssp BCCCTTTCCEEEEEEEECSCC--------------
T ss_pred cCCCCCCceEEEEEEEeCCCchHHHHHHHHHhhcc
Confidence 999998 7899999999999999999888777654
No 8
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=8.2e-36 Score=353.59 Aligned_cols=148 Identities=12% Similarity=0.199 Sum_probs=92.2
Q ss_pred CcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhC------------CCeEEEeecCCCHHHHHHHHHhh
Q 004925 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS------------GVNCVQLVGSMSIPARDAAINRF 616 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~------------g~~~~~i~g~~~~~~r~~~i~~F 616 (723)
..++|+..|.++|...+...++.|+||||+++.+++.|.++|... |..+..++|+++..+|..++++|
T Consensus 610 ~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~F 689 (936)
T 4a2w_A 610 NENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 689 (936)
T ss_dssp CCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC------------------------
T ss_pred CCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHh
Confidence 358999999999998765567899999999999999999999986 55566667889999999999999
Q ss_pred cCCCCceEEEEecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHH
Q 004925 617 TEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKL 696 (723)
Q Consensus 617 ~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~ 696 (723)
++++.++|| ++|+++++|||++.|++||+||++||+..+.||+|| +| .+++.+|.|++.+|+++... ....|..
T Consensus 690 r~~g~~~VL-VaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR---~~~g~vi~Li~~~t~ee~~~-~~~~ke~ 763 (936)
T 4a2w_A 690 KTSKDNRLL-IATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVENEK-CNRYKEE 763 (936)
T ss_dssp ----CCSEE-EEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHHH
T ss_pred hccCCeeEE-EEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCCEEEEEEeCCCHHHHHH-HHHHHHH
Confidence 985577765 566999999999999999999999999999999999 44 56788889999999999765 5555655
Q ss_pred Hhhccc
Q 004925 697 VFEGTV 702 (723)
Q Consensus 697 ~~~~~~ 702 (723)
++...+
T Consensus 764 ~~~~~i 769 (936)
T 4a2w_A 764 MMNKAV 769 (936)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.1e-35 Score=349.33 Aligned_cols=148 Identities=13% Similarity=0.211 Sum_probs=93.0
Q ss_pred CcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhC------------CCeEEEeecCCCHHHHHHHHHhh
Q 004925 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS------------GVNCVQLVGSMSIPARDAAINRF 616 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~------------g~~~~~i~g~~~~~~r~~~i~~F 616 (723)
..++|+..|.++|...+...++.|+||||+++.+++.|.++|+.. |..+..++|+++..+|..++++|
T Consensus 610 ~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F 689 (797)
T 4a2q_A 610 NENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 689 (797)
T ss_dssp CCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC------------------------
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHh
Confidence 458999999999998776678899999999999999999999874 56667778889999999999999
Q ss_pred cCCCCceEEEEecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHH
Q 004925 617 TEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKL 696 (723)
Q Consensus 617 ~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~ 696 (723)
++++.++||| +|+++++|||++.|++||+||+|||+..+.||+|| +| .+++.+|.|++.+++++. +.....|..
T Consensus 690 ~~~g~~~vLV-aT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR---~~~g~~i~l~~~~~~ee~-~~~~~~ke~ 763 (797)
T 4a2q_A 690 KTSKDNRLLI-ATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVEN-EKCNRYKEE 763 (797)
T ss_dssp ----CCSEEE-EECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHHHH
T ss_pred hccCCceEEE-EcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCceEEEEEeCCcHHHH-HHHHHHHHH
Confidence 9855777655 56999999999999999999999999999999999 55 477888999999999998 666666776
Q ss_pred Hhhccc
Q 004925 697 VFEGTV 702 (723)
Q Consensus 697 ~~~~~~ 702 (723)
+++..+
T Consensus 764 ~~~~~i 769 (797)
T 4a2q_A 764 MMNKAV 769 (797)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666655
No 10
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.2e-35 Score=336.78 Aligned_cols=148 Identities=13% Similarity=0.211 Sum_probs=87.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhC------------CCeEEEeecCCCHHHHHHHHHhh
Q 004925 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS------------GVNCVQLVGSMSIPARDAAINRF 616 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~------------g~~~~~i~g~~~~~~r~~~i~~F 616 (723)
..++|+..|.++|.......++.|+||||+++.+++.|.+.|... |..+..++|+++..+|..++++|
T Consensus 369 ~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F 448 (556)
T 4a2p_A 369 NENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 448 (556)
T ss_dssp SCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC-------------------------
T ss_pred CCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHh
Confidence 358899999999998876677899999999999999999999876 55566667789999999999999
Q ss_pred cCCCCceEEEEecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHH
Q 004925 617 TEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKL 696 (723)
Q Consensus 617 ~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~ 696 (723)
++++.++||| +|+++++|||++.+++||+||+|||+..+.||+|| +| .+++.+|.|++++++++. +.....|..
T Consensus 449 ~~~g~~~vLv-aT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR---~~~g~~~~l~~~~~~~~~-~~~~~~k~~ 522 (556)
T 4a2p_A 449 KTSKDNRLLI-ATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVEN-EKCNRYKEE 522 (556)
T ss_dssp -----CCEEE-EEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHHH
T ss_pred cccCceEEEE-EcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCceEEEEEeCcchHHH-HHhhHHHHH
Confidence 9855778665 55999999999999999999999999999999999 55 467888999999999998 666777777
Q ss_pred Hhhccc
Q 004925 697 VFEGTV 702 (723)
Q Consensus 697 ~~~~~~ 702 (723)
+++..+
T Consensus 523 ~~~~~i 528 (556)
T 4a2p_A 523 MMNKAV 528 (556)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766665
No 11
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.1e-35 Score=334.66 Aligned_cols=161 Identities=14% Similarity=0.182 Sum_probs=110.3
Q ss_pred CcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCC------------CeEEEeecCCCHHHHHHHHHhh
Q 004925 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSG------------VNCVQLVGSMSIPARDAAINRF 616 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g------------~~~~~i~g~~~~~~r~~~i~~F 616 (723)
..++|+..+.++|.......++.|+||||++..+++.|...|...| .....++|+++..+|..++++|
T Consensus 368 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F 447 (555)
T 3tbk_A 368 NENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAF 447 (555)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC----------------------
T ss_pred cCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHH
Confidence 3478999999999998877788999999999999999999999864 3445555699999999999999
Q ss_pred cCCCCceEEEEecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHH
Q 004925 617 TEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKL 696 (723)
Q Consensus 617 ~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~ 696 (723)
++++.++||| +|+++++|||++.+++||+||+|||+..+.||+|| |+.+++.+|.|+..++.++. ......|..
T Consensus 448 ~~~g~~~vLv-aT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~~e~ 521 (555)
T 3tbk_A 448 RASGDNNILI-ATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTSSADVIEK-EKANMIKEK 521 (555)
T ss_dssp ----CCSEEE-ECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEESCHHHHHH-HHHHHHHHH
T ss_pred hcCCCeeEEE-EcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEcCCCHHHH-HHHhhHHHH
Confidence 9855778765 66999999999999999999999999999999999 66678999999999998887 444555555
Q ss_pred HhhcccCCCccccCCCCHHHHHh
Q 004925 697 VFEGTVGGSADAFGKLTEADMRF 719 (723)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~ 719 (723)
+++..+. .+..++.+++..
T Consensus 522 ~~~~~~~----~~~~~~~~~~~~ 540 (555)
T 3tbk_A 522 IMNESIL----RLQTWDEMKFGK 540 (555)
T ss_dssp HHHHHHH----HHHHSCHHHHHH
T ss_pred HHHHHHH----hccCCChHHHHH
Confidence 5555442 233445555443
No 12
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=2.2e-33 Score=314.36 Aligned_cols=346 Identities=13% Similarity=0.102 Sum_probs=247.1
Q ss_pred ccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEech-
Q 004925 27 ITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV- 105 (723)
Q Consensus 27 ~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~- 105 (723)
...|+|||.+++.+++.. +++||+++||+|||.+++.++........ +++|||||.
T Consensus 111 ~~~l~~~Q~~ai~~~~~~-----~~~ll~~~tGsGKT~~~~~~~~~~~~~~~------------------~~vlvl~P~~ 167 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVN-----RRRILNLPTSAGRSLIQALLARYYLENYE------------------GKILIIVPTT 167 (510)
T ss_dssp EECCCHHHHHHHHHHHHH-----SEEEEECCSTTTHHHHHHHHHHHHHHHCS------------------SEEEEEESSH
T ss_pred CCCCCHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHHhCCC------------------CeEEEEECcH
Confidence 458999999999998876 77899999999999999877665443221 489999994
Q ss_pred hhHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccccCCCCEEEechhhhHHhhhhccCCCcccccccCccchhhhhhhhh
Q 004925 106 AAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHL 185 (723)
Q Consensus 106 ~l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (723)
.|..||.+++.++.......+..++|....... .....+|+|+|++.+.....
T Consensus 168 ~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~I~i~T~~~l~~~~~-------------------------- 220 (510)
T 2oca_A 168 ALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-YKNDAPVVVGTWQTVVKQPK-------------------------- 220 (510)
T ss_dssp HHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-GCTTCSEEEEEHHHHTTSCG--------------------------
T ss_pred HHHHHHHHHHHHhhcCCccceEEEecCCccccc-cccCCcEEEEeHHHHhhchh--------------------------
Confidence 789999999999855435677777776443322 34678999999998743210
Q ss_pred hhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccccccCCCcHHHHH
Q 004925 186 KYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTAKA 265 (723)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~ 265 (723)
.....|++|||||+|++.+. .....
T Consensus 221 -----------------------------------------------------~~~~~~~liIiDE~H~~~~~--~~~~i 245 (510)
T 2oca_A 221 -----------------------------------------------------EWFSQFGMMMNDECHLATGK--SISSI 245 (510)
T ss_dssp -----------------------------------------------------GGGGGEEEEEEETGGGCCHH--HHHHH
T ss_pred -----------------------------------------------------hhhhcCCEEEEECCcCCCcc--cHHHH
Confidence 11125899999999999773 23334
Q ss_pred HHhh-hcCceEEEeCcCCCCchhhHHHHHHHhccCcCCcccccCCcccccCCCCCCCCCCCCCCccchhhhhhhcccccc
Q 004925 266 VLAL-ESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQ 344 (723)
Q Consensus 266 l~~l-~~~~~l~LTaTP~~n~~~dl~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (723)
+..+ .+.++++||||| .+...+++.+..++++..+...
T Consensus 246 l~~~~~~~~~l~lSATp-~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 284 (510)
T 2oca_A 246 ISGLNNCMFKFGLSGSL-RDGKANIMQYVGMFGEIFKPVT---------------------------------------- 284 (510)
T ss_dssp GGGCTTCCEEEEEESCG-GGCSSCHHHHHHHHCSEECCCC----------------------------------------
T ss_pred HHhcccCcEEEEEEeCC-CCCcccHHHhHHhhCCeEEeeC----------------------------------------
Confidence 4555 567899999999 4555566666666653221100
Q ss_pred ccCCCcchhHHHHHHHHHHhHhHhhhhccCCcccccCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 004925 345 THGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTVMN 424 (723)
Q Consensus 345 ~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~~~lp~~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 424 (723)
..+......+++.....+.+.++........ + .
T Consensus 285 ----------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----------------~---~ 317 (510)
T 2oca_A 285 ----------------------------TSKLMEDGQVTELKINSIFLRYPDEFTTKLK----------------G---K 317 (510)
T ss_dssp ----------------------------CC---------CCEEEEEEEECCHHHHHHHT----------------T---C
T ss_pred ----------------------------HHHHhhCCcCCCceEEEEeecCChHHhcccc----------------c---c
Confidence 0000001125666666667777765431100 0 0
Q ss_pred cHHHHHHHHHHHHhhccCcccccccccccccCCCccccccccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCC
Q 004925 425 NYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAK 504 (723)
Q Consensus 425 ~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (723)
.+...+..+
T Consensus 318 ~~~~~~~~~----------------------------------------------------------------------- 326 (510)
T 2oca_A 318 TYQEEIKII----------------------------------------------------------------------- 326 (510)
T ss_dssp CHHHHHHHH-----------------------------------------------------------------------
T ss_pred chHHHHHHH-----------------------------------------------------------------------
Confidence 000000000
Q ss_pred CCCCCCCcccccccccCCCCCCccccccCCccccchhhccccccCcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHH
Q 004925 505 CPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLD 584 (723)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~ 584 (723)
.....|...+.+.+..... ..+.++|||+. ...+.
T Consensus 327 -------------------------------------------~~~~~~~~~l~~~l~~~~~-~~~~~~ivf~~-~~~~~ 361 (510)
T 2oca_A 327 -------------------------------------------TGLSKRNKWIAKLAIKLAQ-KDENAFVMFKH-VSHGK 361 (510)
T ss_dssp -------------------------------------------HTCHHHHHHHHHHHHHHHT-TTCEEEEEESS-HHHHH
T ss_pred -------------------------------------------hccHHHHHHHHHHHHHHHh-cCCCeEEEEec-HHHHH
Confidence 0113466667777777653 45667888888 78888
Q ss_pred HHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEECCCCChhhHHHHHHhhh
Q 004925 585 LINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIH 664 (723)
Q Consensus 585 ~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~ 664 (723)
.|.+.|...+.++..++|+++..+|+.++++|+++ ...|||+|..++++|+|++.+++||+++++|++..+.|++||++
T Consensus 362 ~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g-~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~g 440 (510)
T 2oca_A 362 AIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENG-KGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVL 440 (510)
T ss_dssp HHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHC-CSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCC-CCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhccc
Confidence 89999999988999999999999999999999976 67777766699999999999999999999999999999999999
Q ss_pred hcCCcc-cEEEEEEEeCCC
Q 004925 665 RIGQYK-PIRIVRFLIENT 682 (723)
Q Consensus 665 R~Gq~~-~V~v~~l~~~~t 682 (723)
|.|+.+ .|.+|.++...+
T Consensus 441 R~g~~~~~v~i~~~~~~~~ 459 (510)
T 2oca_A 441 RKHGSKTIATVWDLIDDAG 459 (510)
T ss_dssp TTTCCCCCCEEEEEEEECC
T ss_pred ccCCCCceEEEEEeecchh
Confidence 999987 699999998654
No 13
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=320.74 Aligned_cols=143 Identities=17% Similarity=0.204 Sum_probs=109.8
Q ss_pred cchHHHHHHHHHHHHHhhcC-CceEEEEcccHhHHHHHHHHHHhC------CCeEEEeecC--------CCHHHHHHHHH
Q 004925 550 SSTKIEALREEIRFMVERDG-SAKGIVFSQFTSFLDLINYSLHKS------GVNCVQLVGS--------MSIPARDAAIN 614 (723)
Q Consensus 550 ~s~Kl~~l~~~l~~~~~~~~-~~KvIIF~~~~~~~~~l~~~L~~~------g~~~~~i~g~--------~~~~~r~~~i~ 614 (723)
.++|+..|.++|...+...+ +.++|||++++.+++.|+++|... |+++..++|+ ++..+|..+++
T Consensus 379 ~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~ 458 (699)
T 4gl2_A 379 ENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVIS 458 (699)
T ss_dssp ---CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHH
Confidence 46788899999988766656 789999999999999999999988 9999999999 99999999999
Q ss_pred hhcCCCCceEEEEecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 004925 615 RFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKK 694 (723)
Q Consensus 615 ~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K 694 (723)
+|+++ ..+||| +|.++++|||++.+++||+||+|||+..+.|++||++|-| ..++.+...++.+.........+
T Consensus 459 ~F~~g-~~~VLV-aT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~~~~~~~~~~~~~ 532 (699)
T 4gl2_A 459 KFRTG-KINLLI-ATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAHSGSGVIERETVNDFR 532 (699)
T ss_dssp HHCC----CCSE-EECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEESSSCSHHHHHHHHHH
T ss_pred HHhcC-CCcEEE-EccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEeCCchHHHHHHHHHHH
Confidence 99985 677655 6699999999999999999999999999999999975544 34444566666444433333333
Q ss_pred HHHh
Q 004925 695 KLVF 698 (723)
Q Consensus 695 ~~~~ 698 (723)
..++
T Consensus 533 ~~~~ 536 (699)
T 4gl2_A 533 EKMM 536 (699)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 14
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3.8e-32 Score=316.21 Aligned_cols=131 Identities=16% Similarity=0.214 Sum_probs=83.8
Q ss_pred cchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCC----CeEEEeec--------CCCHHHHHHHHHhhc
Q 004925 550 SSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSG----VNCVQLVG--------SMSIPARDAAINRFT 617 (723)
Q Consensus 550 ~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g----~~~~~i~g--------~~~~~~r~~~i~~F~ 617 (723)
.++|+..+.++|.......++.++|||++++.+++.|+++|...| +++..++| +++.++|..++++|+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~ 457 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHH
Confidence 478999999999987655677899999999999999999999998 88888854 999999999999999
Q ss_pred CCCCceEEEEecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHH
Q 004925 618 EDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEE 685 (723)
Q Consensus 618 ~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee 685 (723)
+++..+|| ++|+++++|||++.+++||+||+|||+..+.||+|| +|. ++..++.|+..+++++
T Consensus 458 ~~g~~~vL-VaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~ 520 (696)
T 2ykg_A 458 ASGDHNIL-IATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIE 520 (696)
T ss_dssp ---CCSCS-EEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEESCHHHHH
T ss_pred hcCCccEE-EEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCHHH
Confidence 74477765 566999999999999999999999999999999999 885 5567788888887754
No 15
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.97 E-value=3.1e-31 Score=301.87 Aligned_cols=125 Identities=16% Similarity=0.177 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHhh-cCCceEEEEcccHhHHHHHHHHHHhCCCe--------EEEeecCCCHHHHHHHHHhhcCCC-Cc
Q 004925 553 KIEALREEIRFMVER-DGSAKGIVFSQFTSFLDLINYSLHKSGVN--------CVQLVGSMSIPARDAAINRFTEDP-DC 622 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~-~~~~KvIIF~~~~~~~~~l~~~L~~~g~~--------~~~i~g~~~~~~r~~~i~~F~~~~-~~ 622 (723)
+...+.+.|..++.. .++.|+||||.....++.+++.|...+.. +..++|.++ ++|+.++++|.++. ..
T Consensus 421 r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~ 499 (590)
T 3h1t_A 421 RTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETST 499 (590)
T ss_dssp THHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCC
Confidence 445555555444332 45679999999999999999999876443 778899875 46999999999853 36
Q ss_pred eEEEEecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCC---cccEEEEEEE
Q 004925 623 KIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQ---YKPIRIVRFL 678 (723)
Q Consensus 623 ~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq---~~~V~v~~l~ 678 (723)
.++|++++++++|+|++.+++||+++++|++..+.|++||++|.|+ +..+.|+.++
T Consensus 500 ~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 500 PVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp CCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred CEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 6788899999999999999999999999999999999999999985 4557787765
No 16
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.97 E-value=8.2e-30 Score=275.52 Aligned_cols=135 Identities=13% Similarity=0.114 Sum_probs=111.4
Q ss_pred chHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 004925 551 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 630 (723)
Q Consensus 551 s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~ 630 (723)
..|...+.+++.. ..+.|+|||++....+..+++.|...|+.+..++|+++..+|..+++.|+++ ...|| ++|+
T Consensus 235 ~~~~~~l~~~l~~----~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vl-v~T~ 308 (391)
T 1xti_A 235 NEKNRKLFDLLDV----LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF-QRRIL-VATN 308 (391)
T ss_dssp GGHHHHHHHHHHH----SCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-CCSEE-EESC
T ss_pred hhHHHHHHHHHHh----cCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC-CCcEE-EECC
Confidence 3466666666654 3667999999999999999999999999999999999999999999999875 56655 5669
Q ss_pred CCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 004925 631 AGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKK 694 (723)
Q Consensus 631 ~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K 694 (723)
++++|+|++.+++||++++||++..+.|++||++|.|+...+.+ |+... -+..++..+.++
T Consensus 309 ~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~--~~~~~-~~~~~~~~~~~~ 369 (391)
T 1xti_A 309 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAIT--FVSDE-NDAKILNDVQDR 369 (391)
T ss_dssp CCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEE--EECSH-HHHHHHHHHHHH
T ss_pred hhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEE--EEccc-chHHHHHHHHHH
Confidence 99999999999999999999999999999999999997655443 44433 344555555444
No 17
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=4.9e-29 Score=266.82 Aligned_cols=123 Identities=16% Similarity=0.198 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 004925 552 TKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 631 (723)
Q Consensus 552 ~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~ 631 (723)
.|+..+.+++. ..+.++|||++....+..+++.|+..|+.+..++|+++..+|..+++.|+++ ...|++ +|++
T Consensus 225 ~~~~~l~~~l~-----~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv-~T~~ 297 (367)
T 1hv8_A 225 ERFEALCRLLK-----NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQK-KIRILI-ATDV 297 (367)
T ss_dssp GHHHHHHHHHC-----STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTT-SSSEEE-ECTT
T ss_pred HHHHHHHHHHh-----cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcC-CCeEEE-ECCh
Confidence 46666666663 5667999999999999999999999999999999999999999999999976 666555 6699
Q ss_pred CcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCH
Q 004925 632 GGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTI 683 (723)
Q Consensus 632 ~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ 683 (723)
+++|+|++.+++||+++++|++..+.|++||++|.|+...+.+ ++.....
T Consensus 298 ~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~--~~~~~~~ 347 (367)
T 1hv8_A 298 MSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAIS--IINRREY 347 (367)
T ss_dssp HHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEE--EECTTSH
T ss_pred hhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEE--EEcHHHH
Confidence 9999999999999999999999999999999999998765544 5565544
No 18
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.97 E-value=8e-29 Score=268.61 Aligned_cols=124 Identities=14% Similarity=0.168 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 004925 552 TKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 631 (723)
Q Consensus 552 ~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~ 631 (723)
.|+..+..++.. ..+.++|||++....++.+++.|...|+.+..++|+++..+|..+++.|.++ ...|| ++|++
T Consensus 244 ~k~~~l~~~~~~----~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vL-v~T~~ 317 (400)
T 1s2m_A 244 QKLHCLNTLFSK----LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQG-KVRTL-VCSDL 317 (400)
T ss_dssp GHHHHHHHHHHH----SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTT-SSSEE-EESSC
T ss_pred hHHHHHHHHHhh----cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcC-CCcEE-EEcCc
Confidence 466666666653 3567999999999999999999999999999999999999999999999876 66655 46699
Q ss_pred CcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCH
Q 004925 632 GGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTI 683 (723)
Q Consensus 632 ~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ 683 (723)
+++|+|++.+++||+++++|++..+.|++||++|.|+... ++.|+..+..
T Consensus 318 ~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~l~~~~~~ 367 (400)
T 1s2m_A 318 LTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGL--AINLINWNDR 367 (400)
T ss_dssp SSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEE--EEEEECGGGH
T ss_pred cccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCce--EEEEeccchH
Confidence 9999999999999999999999999999999999997644 4446666543
No 19
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.97 E-value=5.8e-29 Score=270.64 Aligned_cols=123 Identities=15% Similarity=0.246 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 632 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~ 632 (723)
|+..+.+++... ...++|||++....++.+++.|...|+.+..++|+++..+|..++++|+++ ...|| ++|+++
T Consensus 263 k~~~l~~~~~~~----~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vl-v~T~~~ 336 (410)
T 2j0s_A 263 KFDTLCDLYDTL----TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG-ASRVL-ISTDVW 336 (410)
T ss_dssp HHHHHHHHHHHH----TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHT-SSCEE-EECGGG
T ss_pred HHHHHHHHHHhc----CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCC-CCCEE-EECChh
Confidence 666677766654 446999999999999999999999999999999999999999999999976 56655 567999
Q ss_pred cccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCH
Q 004925 633 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTI 683 (723)
Q Consensus 633 ~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ 683 (723)
++|+|++.+++||++++||++..+.|++||++|.|++.. ++.|+..+..
T Consensus 337 ~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~~~ 385 (410)
T 2j0s_A 337 ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV--AINFVKNDDI 385 (410)
T ss_dssp SSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEE--EEEEEEGGGH
T ss_pred hCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceE--EEEEecHHHH
Confidence 999999999999999999999999999999999997753 4456666543
No 20
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.96 E-value=4.8e-28 Score=261.88 Aligned_cols=116 Identities=21% Similarity=0.228 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 632 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~ 632 (723)
|...+.+++. ...+.++|||++....++.++..|+..|+.+..++|+++..+|..++++|+++ ..+| |++|+++
T Consensus 230 ~~~~l~~~~~----~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~v-lv~T~~~ 303 (395)
T 3pey_A 230 KFDVLTELYG----LMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREG-RSKV-LITTNVL 303 (395)
T ss_dssp HHHHHHHHHT----TTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT-SCCE-EEECGGG
T ss_pred HHHHHHHHHH----hccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCC-CCCE-EEECChh
Confidence 4444444443 34567999999999999999999999999999999999999999999999976 6665 4567999
Q ss_pred cccccccccCEEEEECCCC------ChhhHHHHHHhhhhcCCcccEEE
Q 004925 633 GVALNLTVASHVFLMDPWW------NPAVEQQAQDRIHRIGQYKPIRI 674 (723)
Q Consensus 633 ~eGlnL~~a~~vI~~d~~w------n~~~~~Q~iGRi~R~Gq~~~V~v 674 (723)
++|+|++.+++||++++|| ++..+.|++||++|.|+...+.+
T Consensus 304 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~ 351 (395)
T 3pey_A 304 ARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAIS 351 (395)
T ss_dssp SSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEE
T ss_pred hcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEE
Confidence 9999999999999999999 99999999999999997654443
No 21
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.96 E-value=9.9e-29 Score=261.23 Aligned_cols=117 Identities=16% Similarity=0.241 Sum_probs=98.3
Q ss_pred hcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEE
Q 004925 567 RDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL 646 (723)
Q Consensus 567 ~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~ 646 (723)
...+.++|||++....++.+++.|. .+..++|+++..+|..++++|+++ ...+|+ +|+++++|+|++.+++||+
T Consensus 217 ~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv-~T~~~~~Gid~~~~~~Vi~ 290 (337)
T 2z0m_A 217 ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREG-EYDMLI-TTDVASRGLDIPLVEKVIN 290 (337)
T ss_dssp TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTT-SCSEEE-ECHHHHTTCCCCCBSEEEE
T ss_pred hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcC-CCcEEE-EcCccccCCCccCCCEEEE
Confidence 3566799999999999999998887 568899999999999999999976 666554 6699999999999999999
Q ss_pred ECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHH
Q 004925 647 MDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKL 690 (723)
Q Consensus 647 ~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~ 690 (723)
+++||++..+.|++||++|.|+...+.+|.. .+..+.+.+...
T Consensus 291 ~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~ 333 (337)
T 2z0m_A 291 FDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKV 333 (337)
T ss_dssp SSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC--
T ss_pred ecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHH
Confidence 9999999999999999999998877777655 433455555443
No 22
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.96 E-value=3.7e-28 Score=264.59 Aligned_cols=121 Identities=16% Similarity=0.211 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 632 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~ 632 (723)
|+..+.+++. ...+.++|||+.....++.+++.|...|+.+..++|+++..+|..+++.|+++ ..+| |++|+++
T Consensus 267 ~~~~l~~~~~----~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~v-lv~T~~~ 340 (414)
T 3eiq_A 267 KLDTLCDLYE----TLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSG-SSRV-LITTDLL 340 (414)
T ss_dssp HHHHHHHHHH----SSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC----C-EEECSSC
T ss_pred HHHHHHHHHH----hCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcC-CCcE-EEECCcc
Confidence 6666666665 34667999999999999999999999999999999999999999999999875 5665 5567999
Q ss_pred cccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCC
Q 004925 633 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 681 (723)
Q Consensus 633 ~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~ 681 (723)
++|+|++.+++||+++++|++..+.|++||++|.|+...+ +.|+.++
T Consensus 341 ~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~~ 387 (414)
T 3eiq_A 341 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVA--INMVTEE 387 (414)
T ss_dssp C--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CE--EEEECST
T ss_pred ccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceE--EEEEcHH
Confidence 9999999999999999999999999999999999977544 4466665
No 23
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.96 E-value=1.3e-26 Score=252.12 Aligned_cols=134 Identities=19% Similarity=0.213 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 004925 552 TKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 631 (723)
Q Consensus 552 ~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~ 631 (723)
.|+..+.+++... .+.++|||++....+..++..|...|+.+..++|+++..+|..++++|.++ ..+|| ++|++
T Consensus 252 ~~~~~l~~~~~~~----~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vl-v~T~~ 325 (412)
T 3fht_A 252 EKFQALCNLYGAI----TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG-KEKVL-VTTNV 325 (412)
T ss_dssp HHHHHHHHHHHHH----SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT-SCSEE-EECGG
T ss_pred HHHHHHHHHHhhc----CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCC-CCcEE-EEcCc
Confidence 3666666666543 556999999999999999999999999999999999999999999999976 66654 56699
Q ss_pred CcccccccccCEEEEECCCCCh------hhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 004925 632 GGVALNLTVASHVFLMDPWWNP------AVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKK 694 (723)
Q Consensus 632 ~~eGlnL~~a~~vI~~d~~wn~------~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K 694 (723)
+++|+|++.+++||++++||++ ..+.|++||++|.|+...+.+ |+.. .-|..++..+.++
T Consensus 326 ~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~--~~~~-~~~~~~~~~i~~~ 391 (412)
T 3fht_A 326 CARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVN--MVDS-KHSMNILNRIQEH 391 (412)
T ss_dssp GTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEE--EECS-HHHHHHHHHHHHH
T ss_pred cccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEE--EEcC-hhhHHHHHHHHHH
Confidence 9999999999999999999865 799999999999997644433 4433 3344455544443
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.96 E-value=5.4e-29 Score=269.34 Aligned_cols=109 Identities=14% Similarity=0.171 Sum_probs=0.0
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEEC
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMD 648 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d 648 (723)
++.++|||+.....++.+++.|+..|+.+..++|+++..+|..+++.|+++ ...|+ ++|+++++|+|++.+++||+++
T Consensus 258 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vl-v~T~~~~~Gldi~~~~~Vi~~~ 335 (394)
T 1fuu_A 258 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG-SSRIL-ISTDLLARGIDVQQVSLVINYD 335 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCC-CCcEE-EECChhhcCCCcccCCEEEEeC
Confidence 456999999999999999999999999999999999999999999999865 56654 5669999999999999999999
Q ss_pred CCCChhhHHHHHHhhhhcCCcccEEEEEEEeCC
Q 004925 649 PWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 681 (723)
Q Consensus 649 ~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~ 681 (723)
+||++..+.|++||++|.|+...+.+ |+..+
T Consensus 336 ~p~s~~~~~Qr~GR~~R~g~~g~~~~--~~~~~ 366 (394)
T 1fuu_A 336 LPANKENYIHRIGRGGRFGRKGVAIN--FVTNE 366 (394)
T ss_dssp ---------------------------------
T ss_pred CCCCHHHHHHHcCcccCCCCCceEEE--EEchh
Confidence 99999999999999999998755444 45544
No 25
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.96 E-value=1.9e-27 Score=259.64 Aligned_cols=120 Identities=18% Similarity=0.165 Sum_probs=104.0
Q ss_pred chHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 004925 551 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 630 (723)
Q Consensus 551 s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~ 630 (723)
..|...+.+++... +.++|||++....++.+++.|...|+++..++|++++.+|..++++|.++ ...|| ++|+
T Consensus 286 ~~k~~~l~~~l~~~-----~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g-~~~vL-vaT~ 358 (434)
T 2db3_A 286 YAKRSKLIEILSEQ-----ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNG-SMKVL-IATS 358 (434)
T ss_dssp GGHHHHHHHHHHHC-----CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTS-SCSEE-EECG
T ss_pred HHHHHHHHHHHHhC-----CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcC-CCcEE-EEch
Confidence 34777777777542 23599999999999999999999999999999999999999999999876 66655 5669
Q ss_pred CCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEe
Q 004925 631 AGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLI 679 (723)
Q Consensus 631 ~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~ 679 (723)
++++|+|++.+++||+||+|+++..+.||+||++|.|+...+.+ |+.
T Consensus 359 v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~--~~~ 405 (434)
T 2db3_A 359 VASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATS--FFD 405 (434)
T ss_dssp GGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEE--EEC
T ss_pred hhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEE--EEe
Confidence 99999999999999999999999999999999999998754444 555
No 26
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.95 E-value=2.2e-27 Score=258.73 Aligned_cols=124 Identities=19% Similarity=0.233 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 004925 552 TKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 631 (723)
Q Consensus 552 ~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~ 631 (723)
.|...+.+++... ..+.++|||+.....++.+++.|...|+.+..++|+++.++|..++++|+++ ..+|| ++|++
T Consensus 261 ~~~~~l~~~l~~~---~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vl-vaT~~ 335 (417)
T 2i4i_A 261 DKRSFLLDLLNAT---GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG-KSPIL-VATAV 335 (417)
T ss_dssp GHHHHHHHHHHTC---CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHT-SSCEE-EECHH
T ss_pred hHHHHHHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcC-CCCEE-EECCh
Confidence 4666666666542 3567999999999999999999999999999999999999999999999875 66655 46699
Q ss_pred CcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCC
Q 004925 632 GGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENT 682 (723)
Q Consensus 632 ~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t 682 (723)
+++|+|++.+++||++++||++..+.|++||++|.|+.. .++.|+.+..
T Consensus 336 ~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~~ 384 (417)
T 2i4i_A 336 AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG--LATSFFNERN 384 (417)
T ss_dssp HHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCE--EEEEEECGGG
T ss_pred hhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCc--eEEEEEcccc
Confidence 999999999999999999999999999999999999764 3444565543
No 27
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.94 E-value=2.6e-26 Score=255.57 Aligned_cols=116 Identities=17% Similarity=0.199 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 632 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~ 632 (723)
|+..+.+.+.. .++.++|||+..+..++.++..|...|+.+..++|+++.++|..++++|.++ ...||+ +|.++
T Consensus 223 ~~~~l~~~l~~----~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~vlV-aT~a~ 296 (523)
T 1oyw_A 223 PLDQLMRYVQE----QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRD-DLQIVV-ATVAF 296 (523)
T ss_dssp HHHHHHHHHHH----TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEE-ECTTS
T ss_pred HHHHHHHHHHh----cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC-CCeEEE-Eechh
Confidence 45555555543 3667999999999999999999999999999999999999999999999986 677655 66999
Q ss_pred cccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEE
Q 004925 633 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRI 674 (723)
Q Consensus 633 ~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v 674 (723)
++|||++.+++||++++|+++..+.|++||++|.|+...+.+
T Consensus 297 ~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l 338 (523)
T 1oyw_A 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (523)
T ss_dssp CTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEE
T ss_pred hCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEE
Confidence 999999999999999999999999999999999998765544
No 28
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.94 E-value=9.3e-26 Score=245.50 Aligned_cols=114 Identities=16% Similarity=0.024 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEE-EeecCCCHHHHHHHHHhhcCCCCceEEEEe---
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCV-QLVGSMSIPARDAAINRFTEDPDCKIFLMS--- 628 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~-~i~g~~~~~~r~~~i~~F~~~~~~~vll~s--- 628 (723)
|...+.+++... +.++|||++.+..++.++..|...|+.+. .++|. +|. +++|.++ ..+||+++
T Consensus 240 ~~~~l~~~l~~~-----~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g-~~~vLvat~s~ 307 (414)
T 3oiy_A 240 SKEKLVELLEIF-----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVG-KINILIGVQAY 307 (414)
T ss_dssp CHHHHHHHHHHH-----CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTT-SCSEEEEECCT
T ss_pred HHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCC-CCeEEEEecCc
Confidence 555566666552 26999999999999999999999999998 88883 444 9999976 78887775
Q ss_pred cCCCcccccccc-cCEEEEECCC--CChhhHHHHHHhhhhcCCc--ccEEEEEEE
Q 004925 629 LKAGGVALNLTV-ASHVFLMDPW--WNPAVEQQAQDRIHRIGQY--KPIRIVRFL 678 (723)
Q Consensus 629 ~~~~~eGlnL~~-a~~vI~~d~~--wn~~~~~Q~iGRi~R~Gq~--~~V~v~~l~ 678 (723)
|+++++|+|++. +++||++++| +++..+.|++||++|.|+. +.-.++.|+
T Consensus 308 T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 308 YGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp TCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred CchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 899999999999 9999999999 9999999999999999974 345555555
No 29
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.94 E-value=1.1e-25 Score=252.85 Aligned_cols=118 Identities=13% Similarity=0.102 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 632 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~ 632 (723)
++..+.+++.. ..++.++||||..+..++.++..|...|+.+..++|+++.++|..++++|.++ ...|| ++|.++
T Consensus 253 ~~~~l~~~l~~---~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g-~~~Vl-VAT~a~ 327 (591)
T 2v1x_A 253 FIEDIVKLING---RYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSAN-EIQVV-VATVAF 327 (591)
T ss_dssp HHHHHHHHHTT---TTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SSSEE-EECTTS
T ss_pred HHHHHHHHHHH---hccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC-CCeEE-EEechh
Confidence 34444444432 23567999999999999999999999999999999999999999999999976 66755 466999
Q ss_pred cccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEE
Q 004925 633 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIV 675 (723)
Q Consensus 633 ~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~ 675 (723)
++|||++.+++||++++|++...+.|++||++|.|+...+.++
T Consensus 328 ~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 328 GMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp CTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred hcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 9999999999999999999999999999999999987555443
No 30
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.93 E-value=1.4e-26 Score=257.91 Aligned_cols=117 Identities=18% Similarity=0.206 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 004925 552 TKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 631 (723)
Q Consensus 552 ~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~ 631 (723)
.|...+.+++... .+.++|||+..+..+..+...|...|+.+..++|+++..+|..++++|.++ ..+| |++|++
T Consensus 343 ~k~~~l~~ll~~~----~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g-~~~V-LVaT~~ 416 (508)
T 3fho_A 343 HKYNVLVELYGLL----TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVG-TSKV-LVTTNV 416 (508)
T ss_dssp HHHHHHHHHHC-------CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSS-SCCC-CEECC-
T ss_pred HHHHHHHHHHHhc----CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCC-CCeE-EEeCCh
Confidence 3555555555433 557999999999999999999999999999999999999999999999876 5665 456699
Q ss_pred CcccccccccCEEEEECCC------CChhhHHHHHHhhhhcCCcccEEE
Q 004925 632 GGVALNLTVASHVFLMDPW------WNPAVEQQAQDRIHRIGQYKPIRI 674 (723)
Q Consensus 632 ~~eGlnL~~a~~vI~~d~~------wn~~~~~Q~iGRi~R~Gq~~~V~v 674 (723)
+++|+|++.+++||+++++ +++..+.|++||++|.|+...+.+
T Consensus 417 l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~ 465 (508)
T 3fho_A 417 IARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSIN 465 (508)
T ss_dssp ----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEE
T ss_pred hhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEE
Confidence 9999999999999999999 789999999999999997655544
No 31
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.93 E-value=5e-25 Score=249.77 Aligned_cols=119 Identities=18% Similarity=0.293 Sum_probs=101.3
Q ss_pred cCCceEEEEcccHhHHHHHHHHHHhC---CCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEE
Q 004925 568 DGSAKGIVFSQFTSFLDLINYSLHKS---GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHV 644 (723)
Q Consensus 568 ~~~~KvIIF~~~~~~~~~l~~~L~~~---g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~v 644 (723)
.++.++|||+.....++.++..|... |+.+..++|++++.+|..++++|.++ ...||| +|+++++|||++.+++|
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g-~~~vLV-aT~~~~~GiDip~v~~V 363 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD-ESGILV-CTDVGARGMDFPNVHEV 363 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHC-SSEEEE-ECGGGTSSCCCTTCCEE
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcC-CCeEEE-EcchhhcCCCcccCCEE
Confidence 56789999999999999999999987 99999999999999999999999986 677554 66999999999999999
Q ss_pred EEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHH
Q 004925 645 FLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQE 692 (723)
Q Consensus 645 I~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~ 692 (723)
|++++|+++..+.|++||++|.|+...+.+ |+..+ |..++..+.
T Consensus 364 I~~~~p~s~~~y~Qr~GRagR~g~~g~~i~--~~~~~--e~~~~~~l~ 407 (579)
T 3sqw_A 364 LQIGVPSELANYIHRIGRTARSGKEGSSVL--FICKD--ELPFVRELE 407 (579)
T ss_dssp EEESCCSSTTHHHHHHTTSSCTTCCEEEEE--EEEGG--GHHHHHHHH
T ss_pred EEcCCCCCHHHhhhhccccccCCCCceEEE--EEccc--HHHHHHHHH
Confidence 999999999999999999999997644433 55554 333444333
No 32
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.93 E-value=9.5e-25 Score=262.37 Aligned_cols=109 Identities=9% Similarity=0.052 Sum_probs=95.1
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhC--CCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEE
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKS--GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL 646 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~--g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~ 646 (723)
.+.+++|||+....++.+++.|+.. ++.+..++|+|+..+|+.++++|.++ .++||| +|.++++|+|++.+++||+
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g-~~~VLV-aT~v~e~GiDip~v~~VIi 888 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ-RFNVLV-CTTIIETGIDIPTANTIII 888 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTT-SCCEEE-ESSTTGGGSCCTTEEEEEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcC-CCcEEE-ECCcceeeecccCCcEEEE
Confidence 4579999999999999999999987 89999999999999999999999975 677655 5589999999999999999
Q ss_pred ECC-CCChhhHHHHHHhhhhcCCcccEEEEEEEeCC
Q 004925 647 MDP-WWNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 681 (723)
Q Consensus 647 ~d~-~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~ 681 (723)
+++ .|+...+.|++||++|.|+... .|.++..+
T Consensus 889 ~~~~~~~l~~l~Qr~GRvgR~g~~g~--~~ll~~~~ 922 (1151)
T 2eyq_A 889 ERADHFGLAQLHQLRGRVGRSHHQAY--AWLLTPHP 922 (1151)
T ss_dssp TTTTSSCHHHHHHHHTTCCBTTBCEE--EEEEECCG
T ss_pred eCCCCCCHHHHHHHHhccCcCCCceE--EEEEECCc
Confidence 988 5999999999999999987643 44455443
No 33
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.93 E-value=2.2e-25 Score=247.27 Aligned_cols=116 Identities=21% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 632 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~ 632 (723)
|...+..++... ...++||||+....+..++..|...|+.+..++|+++..+|..+++.|.++ ...|| ++|+++
T Consensus 320 ~~~~l~~~~~~~----~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g-~~~iL-v~T~~~ 393 (479)
T 3fmp_B 320 KFQALCNLYGAI----TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG-KEKVL-VTTNVC 393 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhc----cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcC-CCcEE-EEcccc
Confidence 444444444432 446899999999999999999999999999999999999999999999976 66655 566999
Q ss_pred cccccccccCEEEEECCCCCh------hhHHHHHHhhhhcCCcccEEE
Q 004925 633 GVALNLTVASHVFLMDPWWNP------AVEQQAQDRIHRIGQYKPIRI 674 (723)
Q Consensus 633 ~eGlnL~~a~~vI~~d~~wn~------~~~~Q~iGRi~R~Gq~~~V~v 674 (723)
++|+|++.+++||+|++||++ ..+.|++||++|.|+...+.+
T Consensus 394 ~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~ 441 (479)
T 3fmp_B 394 ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVN 441 (479)
T ss_dssp ------------------------------------------------
T ss_pred ccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEE
Confidence 999999999999999999865 689999999999997654433
No 34
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.93 E-value=1.2e-24 Score=246.52 Aligned_cols=119 Identities=18% Similarity=0.284 Sum_probs=101.2
Q ss_pred cCCceEEEEcccHhHHHHHHHHHHhC---CCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEE
Q 004925 568 DGSAKGIVFSQFTSFLDLINYSLHKS---GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHV 644 (723)
Q Consensus 568 ~~~~KvIIF~~~~~~~~~l~~~L~~~---g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~v 644 (723)
.++.++|||+.....++.++..|... |+.+..++|++++.+|..+++.|.++ ...||| +|+++++|||++.+++|
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g-~~~vLv-aT~~~~~GiDip~v~~V 414 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD-ESGILV-CTDVGARGMDFPNVHEV 414 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHC-SSEEEE-ECGGGTSSCCCTTCCEE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcC-CCCEEE-EcchhhcCCCcccCCEE
Confidence 56789999999999999999999987 99999999999999999999999976 677555 66999999999999999
Q ss_pred EEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHH
Q 004925 645 FLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQE 692 (723)
Q Consensus 645 I~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~ 692 (723)
|++++|+++..+.|++||++|.|+...+ +.|+..+. ...++.+.
T Consensus 415 I~~~~p~s~~~y~Qr~GRagR~g~~g~~--i~~~~~~e--~~~~~~l~ 458 (563)
T 3i5x_A 415 LQIGVPSELANYIHRIGRTARSGKEGSS--VLFICKDE--LPFVRELE 458 (563)
T ss_dssp EEESCCSSTTHHHHHHTTSSCTTCCEEE--EEEEEGGG--HHHHHHHH
T ss_pred EEECCCCchhhhhhhcCccccCCCCceE--EEEEchhH--HHHHHHHH
Confidence 9999999999999999999999976443 33555543 33444443
No 35
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.6e-23 Score=246.28 Aligned_cols=124 Identities=18% Similarity=0.119 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCe------------------------------------
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVN------------------------------------ 596 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~------------------------------------ 596 (723)
++..+++.+.. ....++|||+..+...+.++..|...++.
T Consensus 330 ~l~~l~~~l~~----~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l 405 (1010)
T 2xgj_A 330 DIYKIVKMIWK----KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLL 405 (1010)
T ss_dssp HHHHHHHHHHH----HTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHh----cCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHH
Confidence 44555555543 34568999999999999999998775442
Q ss_pred ---EEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEE----ECC----CCChhhHHHHHHhhhh
Q 004925 597 ---CVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL----MDP----WWNPAVEQQAQDRIHR 665 (723)
Q Consensus 597 ---~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~----~d~----~wn~~~~~Q~iGRi~R 665 (723)
+..++|++++.+|..+.+.|.++ ..+||+ +|.++++|||++.++.||. ||. +|++..+.|++||++|
T Consensus 406 ~~gI~~~Hggl~~~eR~~ve~~F~~G-~ikVLV-AT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR 483 (1010)
T 2xgj_A 406 RRGIGIHHSGLLPILKEVIEILFQEG-FLKVLF-ATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGR 483 (1010)
T ss_dssp HHTEEEESTTSCHHHHHHHHHHHHTT-CCSEEE-EEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCC
T ss_pred hCCeeEECCCCCHHHHHHHHHHHhcC-CCcEEE-EehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhccc
Confidence 78899999999999999999975 777666 5599999999999999998 999 8999999999999999
Q ss_pred cCCcccEEEEEEEeCCC
Q 004925 666 IGQYKPIRIVRFLIENT 682 (723)
Q Consensus 666 ~Gq~~~V~v~~l~~~~t 682 (723)
.|+....++|.++.++.
T Consensus 484 ~G~d~~G~vi~l~~~~~ 500 (1010)
T 2xgj_A 484 RGLDDRGIVIMMIDEKM 500 (1010)
T ss_dssp TTTCSSEEEEEEECSCC
T ss_pred CCCCCceEEEEEECCCC
Confidence 99987788888887663
No 36
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.91 E-value=8.2e-25 Score=250.95 Aligned_cols=104 Identities=17% Similarity=0.178 Sum_probs=84.0
Q ss_pred CCceEEEEcccH--------hHHHHHHHHHHh---CCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCccccc
Q 004925 569 GSAKGIVFSQFT--------SFLDLINYSLHK---SGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALN 637 (723)
Q Consensus 569 ~~~KvIIF~~~~--------~~~~~l~~~L~~---~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGln 637 (723)
.+.+++|||... ..+..+.+.|.. .++.+..++|+++.++|..++++|.++ ..+|| ++|.++++|+|
T Consensus 577 ~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G-~~~IL-VaT~vie~GID 654 (780)
T 1gm5_A 577 RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEG-RYDIL-VSTTVIEVGID 654 (780)
T ss_dssp TSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTT-SSSBC-CCSSCCCSCSC
T ss_pred cCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCC-CCeEE-EECCCCCcccc
Confidence 445677777644 346777788877 478899999999999999999999976 66755 56699999999
Q ss_pred ccccCEEEEECCC-CChhhHHHHHHhhhhcCCcccEEE
Q 004925 638 LTVASHVFLMDPW-WNPAVEQQAQDRIHRIGQYKPIRI 674 (723)
Q Consensus 638 L~~a~~vI~~d~~-wn~~~~~Q~iGRi~R~Gq~~~V~v 674 (723)
++.+++||+++++ |+...+.|++||++|.|+...+.+
T Consensus 655 iP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~il 692 (780)
T 1gm5_A 655 VPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFL 692 (780)
T ss_dssp CTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEEC
T ss_pred CCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEE
Confidence 9999999999998 578999999999999997755444
No 37
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.90 E-value=9e-23 Score=205.35 Aligned_cols=217 Identities=15% Similarity=0.139 Sum_probs=159.9
Q ss_pred CCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHhccccc--cHHHHHHHHHHHHhhccCcccccccccccccCCCc
Q 004925 382 LPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTVMN--NYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETE 459 (723)
Q Consensus 382 lp~~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~~~~~ 459 (723)
.|.+.+.+++++|++.|+++|+.+.......+..+.+...... ....+...+.++|++|+||+++......... ..
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~~--~~ 97 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKSL--IT 97 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSCS--CS
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCccc--cc
Confidence 4888999999999999999999999877777766665433221 1245678889999999999987311000000 00
Q ss_pred cccccccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcccccccccCCCCCCccccccCCccccc
Q 004925 460 ADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSI 539 (723)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (723)
T Consensus 98 -------------------------------------------------------------------------------- 97 (328)
T 3hgt_A 98 -------------------------------------------------------------------------------- 97 (328)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhccccccCcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCC
Q 004925 540 LNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTED 619 (723)
Q Consensus 540 ~~~~~~~~~~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~ 619 (723)
..........|+|+..|-.+|..+ ...++||+||+++..+++.|+++|...|+.+.+++|+... .+++. .+
T Consensus 98 -~~~~~~l~~~SGKf~~L~~LL~~l--~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~-~~~k~-----~~ 168 (328)
T 3hgt_A 98 -RDVPAHLAENSGKFSVLRDLINLV--QEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIK-SAAAA-----ND 168 (328)
T ss_dssp -TTHHHHHHHTCHHHHHHHHHHHHH--TTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-------------C
T ss_pred -cchhhHHHHcCccHHHHHHHHHHH--HhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchh-hhhhc-----cc
Confidence 000011224699999999999988 4578999999999999999999999999999999999543 32221 13
Q ss_pred CCceEEEEecCCCccccc-----ccccCEEEEECCCCChhhH-HHHHHhhhhc--CCcccEEEEEEEeCCCHHHHHHHH
Q 004925 620 PDCKIFLMSLKAGGVALN-----LTVASHVFLMDPWWNPAVE-QQAQDRIHRI--GQYKPIRIVRFLIENTIEERILKL 690 (723)
Q Consensus 620 ~~~~vll~s~~~~~eGln-----L~~a~~vI~~d~~wn~~~~-~Q~iGRi~R~--Gq~~~V~v~~l~~~~t~ee~~~~~ 690 (723)
..+.++|++ .+|+.|+| |..|+.||+||+.|||... .|++.|++|. ||+++|.||+|++.+|+|+.++..
T Consensus 169 ~~~~i~Llt-sag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~ 246 (328)
T 3hgt_A 169 FSCTVHLFS-SEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFF 246 (328)
T ss_dssp CSEEEEEEE-SSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHH
T ss_pred CCceEEEEE-CCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHc
Confidence 467777765 67777886 8999999999999999997 8999999998 788999999999999999999886
No 38
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.2e-22 Score=238.93 Aligned_cols=121 Identities=16% Similarity=0.088 Sum_probs=97.1
Q ss_pred cCCceEEEEcccHhHHHHHHHHHHhCCCe---------------------------------------EEEeecCCCHHH
Q 004925 568 DGSAKGIVFSQFTSFLDLINYSLHKSGVN---------------------------------------CVQLVGSMSIPA 608 (723)
Q Consensus 568 ~~~~KvIIF~~~~~~~~~l~~~L~~~g~~---------------------------------------~~~i~g~~~~~~ 608 (723)
....++|||+..+...+.++..|...|+. +..++|++++.+
T Consensus 439 ~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~ 518 (1108)
T 3l9o_A 439 KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPIL 518 (1108)
T ss_dssp TTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHH
T ss_pred cCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHH
Confidence 45669999999999999999988664332 789999999999
Q ss_pred HHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEECCCCCh--------hhHHHHHHhhhhcCCcccEEEEEEEeC
Q 004925 609 RDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNP--------AVEQQAQDRIHRIGQYKPIRIVRFLIE 680 (723)
Q Consensus 609 r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~--------~~~~Q~iGRi~R~Gq~~~V~v~~l~~~ 680 (723)
|..++..|.++ ..+||+ +|.++++|||++.+++||.++.+|++ ..+.|++||++|.|+....++|.++..
T Consensus 519 R~~v~~~F~~G-~ikVLV-AT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~ 596 (1108)
T 3l9o_A 519 KEVIEILFQEG-FLKVLF-ATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDE 596 (1108)
T ss_dssp HHHHHHHHHHT-CCCEEE-EESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECC
T ss_pred HHHHHHHHhCC-CCeEEE-ECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecC
Confidence 99999999976 777665 55999999999999999987776654 459999999999999888888888877
Q ss_pred CCHHHHHHHH
Q 004925 681 NTIEERILKL 690 (723)
Q Consensus 681 ~t~ee~~~~~ 690 (723)
+..+..+.+.
T Consensus 597 ~~~~~~~~~l 606 (1108)
T 3l9o_A 597 KMEPQVAKGM 606 (1108)
T ss_dssp CCCHHHHHHH
T ss_pred CcCHHHHHHH
Confidence 6444433333
No 39
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.89 E-value=1.4e-21 Score=227.30 Aligned_cols=112 Identities=12% Similarity=0.074 Sum_probs=93.3
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhCC------------------------------------CeEEEeecCCCHHHHHHH
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKSG------------------------------------VNCVQLVGSMSIPARDAA 612 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~g------------------------------------~~~~~i~g~~~~~~r~~~ 612 (723)
++.++|||+..+...+.++..|.... ..+..++|+++.++|..+
T Consensus 251 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v 330 (715)
T 2va8_A 251 KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLI 330 (715)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHH
Confidence 55799999999999999999987642 248899999999999999
Q ss_pred HHhhcCCCCceEEEEecCCCcccccccccCEEEE----EC-------CCCChhhHHHHHHhhhhcCCcccEEEEEEEeCC
Q 004925 613 INRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL----MD-------PWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 681 (723)
Q Consensus 613 i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~----~d-------~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~ 681 (723)
.+.|.++ ..+|++ +|.++++|+|++..++||. |+ .++++..+.|++||++|.|+...-..|.++...
T Consensus 331 ~~~f~~g-~~~vlv-aT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~ 408 (715)
T 2va8_A 331 EEGFRQR-KIKVIV-ATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDK 408 (715)
T ss_dssp HHHHHTT-CSCEEE-ECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCG
T ss_pred HHHHHcC-CCeEEE-EChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCc
Confidence 9999976 777655 5599999999999999998 88 789999999999999999988887888888765
Q ss_pred C
Q 004925 682 T 682 (723)
Q Consensus 682 t 682 (723)
.
T Consensus 409 ~ 409 (715)
T 2va8_A 409 E 409 (715)
T ss_dssp G
T ss_pred h
Confidence 4
No 40
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.89 E-value=1.3e-21 Score=231.77 Aligned_cols=133 Identities=13% Similarity=0.052 Sum_probs=108.1
Q ss_pred chHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCC-----------------------------------
Q 004925 551 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGV----------------------------------- 595 (723)
Q Consensus 551 s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~----------------------------------- 595 (723)
..++..+++.+.. ....++|||+..+...+.++..|...|+
T Consensus 321 ~~~~~~li~~l~~----~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~ 396 (997)
T 4a4z_A 321 KKTWPEIVNYLRK----RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRS 396 (997)
T ss_dssp TTHHHHHHHHHHH----TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHH
T ss_pred hhHHHHHHHHHHh----CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHH
Confidence 3566667666653 4567999999999999999999977665
Q ss_pred ----eEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEECCCC---------ChhhHHHHHHh
Q 004925 596 ----NCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWW---------NPAVEQQAQDR 662 (723)
Q Consensus 596 ----~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~w---------n~~~~~Q~iGR 662 (723)
.+..++|++++.+|..+++.|..+ ..+||+ +|.++++|||++. ..||+++.++ ++..+.|++||
T Consensus 397 ~l~~gi~~~H~gl~~~~R~~v~~~F~~G-~~kVLv-AT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GR 473 (997)
T 4a4z_A 397 LLERGIAVHHGGLLPIVKELIEILFSKG-FIKVLF-ATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGR 473 (997)
T ss_dssp HHTTTEEEECTTSCHHHHHHHHHHHHTT-CCSEEE-ECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGG
T ss_pred HhhcCeeeecCCCCHHHHHHHHHHHHCC-CCcEEE-EchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcc
Confidence 478999999999999999999976 677655 5699999999999 7777766655 89999999999
Q ss_pred hhhcCCcccEEEEEEEeCCCHHHHHHHH
Q 004925 663 IHRIGQYKPIRIVRFLIENTIEERILKL 690 (723)
Q Consensus 663 i~R~Gq~~~V~v~~l~~~~t~ee~~~~~ 690 (723)
++|.|+...-+++.++..+..++.++..
T Consensus 474 AGR~G~~~~G~vi~l~~~~~~~~~~~~~ 501 (997)
T 4a4z_A 474 AGRRGLDSTGTVIVMAYNSPLSIATFKE 501 (997)
T ss_dssp GCCTTTCSSEEEEEECCSSCCCHHHHHH
T ss_pred cccCCCCcceEEEEecCCCcchHHHHHH
Confidence 9999988887887777666655555543
No 41
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.89 E-value=8.6e-22 Score=228.91 Aligned_cols=115 Identities=10% Similarity=-0.004 Sum_probs=98.1
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhC------------------C---------------CeEEEeecCCCHHHHHHHHHh
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKS------------------G---------------VNCVQLVGSMSIPARDAAINR 615 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~------------------g---------------~~~~~i~g~~~~~~r~~~i~~ 615 (723)
++.++|||+..+.....++..|... + ..+..++|+++.++|..+.+.
T Consensus 236 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 315 (720)
T 2zj8_A 236 KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEEN 315 (720)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 4579999999999998888888653 1 248999999999999999999
Q ss_pred hcCCCCceEEEEecCCCcccccccccCEEEE----EC----CCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHH
Q 004925 616 FTEDPDCKIFLMSLKAGGVALNLTVASHVFL----MD----PWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEE 685 (723)
Q Consensus 616 F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~----~d----~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee 685 (723)
|.++ ..+|++ +|.++++|+|++..++||. || .++++..+.|++||++|.|+...-.+|.++.....+.
T Consensus 316 f~~g-~~~vlv-aT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 316 FRKG-IIKAVV-ATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp HHTT-SSCEEE-ECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHH
T ss_pred HHCC-CCeEEE-ECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHH
Confidence 9976 677655 5699999999999999887 76 5789999999999999999888878888888877554
No 42
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.89 E-value=7.9e-22 Score=228.53 Aligned_cols=115 Identities=12% Similarity=0.053 Sum_probs=97.9
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhC------------------------------CCeEEEeecCCCHHHHHHHHHhhcC
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKS------------------------------GVNCVQLVGSMSIPARDAAINRFTE 618 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~------------------------------g~~~~~i~g~~~~~~r~~~i~~F~~ 618 (723)
++.++|||+..+.....++..|... +..+..++|+++.++|..+.+.|.+
T Consensus 241 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 320 (702)
T 2p6r_A 241 ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRR 320 (702)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHT
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHC
Confidence 4579999999999988888888642 2357789999999999999999997
Q ss_pred CCCceEEEEecCCCcccccccccCEEEE----EC---CCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHH
Q 004925 619 DPDCKIFLMSLKAGGVALNLTVASHVFL----MD---PWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEE 685 (723)
Q Consensus 619 ~~~~~vll~s~~~~~eGlnL~~a~~vI~----~d---~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee 685 (723)
+ ..+|++ +|.+++.|+|++..++||. || .++++..+.|++||++|.|+...-.+|.++.....+.
T Consensus 321 g-~~~vlv-aT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 392 (702)
T 2p6r_A 321 G-NIKVVV-ATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREI 392 (702)
T ss_dssp T-SCCEEE-ECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHH
T ss_pred C-CCeEEE-ECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHH
Confidence 6 677655 6699999999999999988 66 6789999999999999999988888888888776553
No 43
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.86 E-value=4.8e-21 Score=228.80 Aligned_cols=87 Identities=13% Similarity=0.032 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEE-EeecCCCHHHHHHHHHhhcCCCCceEEEEe---
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCV-QLVGSMSIPARDAAINRFTEDPDCKIFLMS--- 628 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~-~i~g~~~~~~r~~~i~~F~~~~~~~vll~s--- 628 (723)
|...+.+++... +.++|||++....++.++..|...|+.+. .++| +|.+ +++|.++ ..+|||++
T Consensus 297 k~~~L~~ll~~~-----~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G-~~~VLVatas~ 364 (1104)
T 4ddu_A 297 SKEKLVELLEIF-----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVG-KINILIGVQAY 364 (1104)
T ss_dssp CHHHHHHHHHHH-----CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHT-SCSEEEEETTT
T ss_pred HHHHHHHHHHhc-----CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCC-CCCEEEEecCC
Confidence 555566666552 26999999999999999999999999998 8888 2555 9999986 78877764
Q ss_pred cCCCcccccccc-cCEEEEECCCC
Q 004925 629 LKAGGVALNLTV-ASHVFLMDPWW 651 (723)
Q Consensus 629 ~~~~~eGlnL~~-a~~vI~~d~~w 651 (723)
|+++++|||++. +++||+||+|-
T Consensus 365 TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 365 YGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCeeEecCcCCCCCCEEEEECCCC
Confidence 799999999999 99999999997
No 44
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.86 E-value=1.4e-21 Score=229.92 Aligned_cols=106 Identities=11% Similarity=0.039 Sum_probs=83.1
Q ss_pred CceEEEEcccHhHHHHHHHHHHhCC------------CeE-EEeecC----------C----------CH----------
Q 004925 570 SAKGIVFSQFTSFLDLINYSLHKSG------------VNC-VQLVGS----------M----------SI---------- 606 (723)
Q Consensus 570 ~~KvIIF~~~~~~~~~l~~~L~~~g------------~~~-~~i~g~----------~----------~~---------- 606 (723)
+.|.||||..+..+..+++.|.+.+ +++ +.++|. + +.
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 4689999999999999999997754 455 445542 1 21
Q ss_pred -------------------HHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcC
Q 004925 607 -------------------PARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIG 667 (723)
Q Consensus 607 -------------------~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~G 667 (723)
..|..++++|.++ .+++||+ ++.+.+|+|.+.+ +++++|.|.+...+.|++||+.|.+
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g-~i~ILIv-vd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~ 693 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQ-DIDLLIV-VGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIY 693 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTT-SSSEEEE-SSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCC
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHcC-CCeEEEE-cchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCC
Confidence 1377889999875 7886665 5999999999999 7788999999999999999999998
Q ss_pred Cc-c-cEEEEEEE
Q 004925 668 QY-K-PIRIVRFL 678 (723)
Q Consensus 668 q~-~-~V~v~~l~ 678 (723)
.. + ...|+.|+
T Consensus 694 ~~~K~~G~IVdf~ 706 (1038)
T 2w00_A 694 DATKTFGNIVTFR 706 (1038)
T ss_dssp CTTCCSEEEEESS
T ss_pred CCCCCcEEEEEcc
Confidence 64 3 36666665
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.85 E-value=1.9e-20 Score=223.96 Aligned_cols=119 Identities=13% Similarity=0.124 Sum_probs=91.3
Q ss_pred CceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEe---cCCCccccccccc-CEEE
Q 004925 570 SAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMS---LKAGGVALNLTVA-SHVF 645 (723)
Q Consensus 570 ~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s---~~~~~eGlnL~~a-~~vI 645 (723)
+.++||||.....++.++..|+.. +++..++|++ ..++++|.++ ..+|||++ |+++++|||++.+ ++||
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G-~~~VLVaTas~Tdv~~rGIDip~VI~~VI 347 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEG-EIDHLIGTAHYYGTLVRGLDLPERIRFAV 347 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHT-SCSEEEEECC------CCSCCTTTCCEEE
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcC-CCcEEEEecCCCCeeEeccccCCcccEEE
Confidence 468999999999999999999998 9999999987 3788999976 77888875 8999999999996 9999
Q ss_pred EECCC-----------------------------------------------------------------------CChh
Q 004925 646 LMDPW-----------------------------------------------------------------------WNPA 654 (723)
Q Consensus 646 ~~d~~-----------------------------------------------------------------------wn~~ 654 (723)
++++| .+..
T Consensus 348 ~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 427 (1054)
T 1gku_B 348 FVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLR 427 (1054)
T ss_dssp EESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHH
T ss_pred EeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHH
Confidence 99999 7899
Q ss_pred hHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHH
Q 004925 655 VEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLV 697 (723)
Q Consensus 655 ~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~K~~~ 697 (723)
.+.|++||++|.|.......+.++..+ |..++..+.++...
T Consensus 428 ~yiQr~GRagR~g~~g~~~g~~~~~~~--d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 428 TYIQGSGRTSRLFAGGLTKGASFLLED--DSELLSAFIERAKL 468 (1054)
T ss_dssp HHHHHHHTTCCEETTEECCEEEEEECS--CHHHHHHHHHHHHT
T ss_pred HHhhhhchhhhccCCCCceEEEEEEec--CHHHHHHHHHHHhh
Confidence 999999999998876421222234444 34455555555554
No 46
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.78 E-value=5e-19 Score=181.49 Aligned_cols=165 Identities=18% Similarity=0.210 Sum_probs=123.5
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hh
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VA 106 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~ 106 (723)
..|+|||.+++.+++.. +++||+++||+|||++++.++........ +++||||| ..
T Consensus 112 ~~l~~~Q~~ai~~~l~~-----~~~ll~~~tGsGKT~~~~~~~~~~~~~~~------------------~~~lil~Pt~~ 168 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN-----RRRILNLPTSAGRSLIQALLARYYLENYE------------------GKILIIVPTTA 168 (282)
T ss_dssp CCCCHHHHHHHHHHHHH-----SEEEECCCTTSCHHHHHHHHHHHHHHHCS------------------SEEEEECSSHH
T ss_pred cCccHHHHHHHHHHHhc-----CCeEEEcCCCCCcHHHHHHHHHHHHHcCC------------------CeEEEEECCHH
Confidence 48999999999998876 66799999999999999887765443221 58999999 57
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccccCCCCEEEechhhhHHhhhhccCCCcccccccCccchhhhhhhhhh
Q 004925 107 AVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHLK 186 (723)
Q Consensus 107 l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (723)
|+.||.+++.++.......+..+.+...... ......+|+|+|++.+.....
T Consensus 169 L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~I~v~T~~~l~~~~~--------------------------- 220 (282)
T 1rif_A 169 LTTQMADDFVDYRLFSHAMIKKIGGGASKDD-KYKNDAPVVVGTWQTVVKQPK--------------------------- 220 (282)
T ss_dssp HHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-CCCTTCSEEEECHHHHTTSCG---------------------------
T ss_pred HHHHHHHHHHHhcccccceEEEEeCCCcchh-hhccCCcEEEEchHHHHhhHH---------------------------
Confidence 9999999999997644556666666543322 334678999999998743310
Q ss_pred hccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccccccCCCcHHHHHH
Q 004925 187 YFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTAKAV 266 (723)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~l 266 (723)
.....|++||+||||++.+. .....+
T Consensus 221 ----------------------------------------------------~~~~~~~~vIiDEaH~~~~~--~~~~il 246 (282)
T 1rif_A 221 ----------------------------------------------------EWFSQFGMMMNDECHLATGK--SISSII 246 (282)
T ss_dssp ----------------------------------------------------GGGGGEEEEEEETGGGCCHH--HHHHHT
T ss_pred ----------------------------------------------------HHHhhCCEEEEECCccCCcc--cHHHHH
Confidence 11125799999999999864 344455
Q ss_pred Hhh-hcCceEEEeCcCCCCchhhHHHHHHHhcc
Q 004925 267 LAL-ESSYKWALSGTPLQNRVGELYSLVRFLQI 298 (723)
Q Consensus 267 ~~l-~~~~~l~LTaTP~~n~~~dl~~~l~lL~~ 298 (723)
..+ ...++++|||||.. ...+++.++.++++
T Consensus 247 ~~~~~~~~~l~lSATp~~-~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 247 SGLNNCMFKFGLSGSLRD-GKANIMQYVGMFGE 278 (282)
T ss_dssp TTCTTCCEEEEECSSCCT-TSTTHHHHHHHHCE
T ss_pred HHhhcCCeEEEEeCCCCC-cchHHHHHHHhcCC
Confidence 555 57889999999964 45788888888874
No 47
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.75 E-value=2e-17 Score=155.78 Aligned_cols=136 Identities=13% Similarity=0.129 Sum_probs=114.5
Q ss_pred CcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEe
Q 004925 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMS 628 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s 628 (723)
..+.|+..|.+++... ++.|+|||+++...++.++..|...|+.+..++|++++.+|..++++|+++ ...||| +
T Consensus 14 ~~~~K~~~L~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g-~~~vLv-a 87 (172)
T 1t5i_A 14 KDNEKNRKLFDLLDVL----EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF-QRRILV-A 87 (172)
T ss_dssp CGGGHHHHHHHHHHHS----CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEE-E
T ss_pred ChHHHHHHHHHHHHhC----CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCC-CCcEEE-E
Confidence 4567999999988753 567999999999999999999999999999999999999999999999975 677655 5
Q ss_pred cCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHH
Q 004925 629 LKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEK 693 (723)
Q Consensus 629 ~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ee~~~~~~~~ 693 (723)
|+++++|+|++.+++||+||+||++..+.|++||++|.|+...+. .|+... -|..++..+.+
T Consensus 88 T~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~--~~~~~~-~~~~~~~~l~~ 149 (172)
T 1t5i_A 88 TNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAI--TFVSDE-NDAKILNDVQD 149 (172)
T ss_dssp SSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEE--EEECSH-HHHHHHHHHHH
T ss_pred CCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEE--EEEcCh-hHHHHHHHHHH
Confidence 599999999999999999999999999999999999999875443 345432 24444444443
No 48
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.75 E-value=5.9e-18 Score=183.78 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=82.7
Q ss_pred CceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCE------
Q 004925 570 SAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASH------ 643 (723)
Q Consensus 570 ~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~------ 643 (723)
+.++|||+.....++.++..|+..|+++..++|+ +|..++++|.++ ..+||+ +|.++++|+|++ ..+
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g-~~~vLV-aT~v~e~GiDip-~~~VI~~g~ 243 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSE-KWDFVI-TTDISEMGANFK-ADRVIDPRK 243 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHS-CCSEEE-ECGGGGTSCCCC-CSEEEECCE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCC-CCeEEE-ECchHHcCcccC-CcEEEecCc
Confidence 4589999999999999999999999999999996 578899999876 667554 669999999998 544
Q ss_pred -----------EEEECCCCChhhHHHHHHhhhhcCCccc
Q 004925 644 -----------VFLMDPWWNPAVEQQAQDRIHRIGQYKP 671 (723)
Q Consensus 644 -----------vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~ 671 (723)
+|+++.|.+...+.|++||++|.|....
T Consensus 244 ~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~ 282 (431)
T 2v6i_A 244 TIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLG 282 (431)
T ss_dssp EEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCC
T ss_pred cccceecccceeecccccCCHHHHHHhhhccCCCCCCCC
Confidence 5778899999999999999999986544
No 49
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.74 E-value=1.5e-17 Score=155.31 Aligned_cols=125 Identities=15% Similarity=0.238 Sum_probs=110.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEe
Q 004925 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMS 628 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s 628 (723)
..+.|+..|.+++... ++.|+|||++....++.+...|...|+.+..++|++++.+|..++++|+++ ...+|+ +
T Consensus 18 ~~~~K~~~L~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g-~~~vlv-~ 91 (163)
T 2hjv_A 18 REENKFSLLKDVLMTE----NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG-EYRYLV-A 91 (163)
T ss_dssp CGGGHHHHHHHHHHHH----CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEE-E
T ss_pred ChHHHHHHHHHHHHhc----CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC-CCeEEE-E
Confidence 4577999999998764 557999999999999999999999999999999999999999999999976 667655 6
Q ss_pred cCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCC
Q 004925 629 LKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 681 (723)
Q Consensus 629 ~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~ 681 (723)
|+++++|+|++.+++||++++||++..+.|++||++|.|+...+ +.|+...
T Consensus 92 T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~ 142 (163)
T 2hjv_A 92 TDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKA--ISFVTAF 142 (163)
T ss_dssp CGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEE--EEEECGG
T ss_pred CChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceE--EEEecHH
Confidence 69999999999999999999999999999999999999987554 4455544
No 50
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.73 E-value=5.6e-17 Score=183.27 Aligned_cols=105 Identities=16% Similarity=0.214 Sum_probs=90.7
Q ss_pred EEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCC-CCceEEEEecCCCcccccccccCEEEEECC--
Q 004925 573 GIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTED-PDCKIFLMSLKAGGVALNLTVASHVFLMDP-- 649 (723)
Q Consensus 573 vIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~-~~~~vll~s~~~~~eGlnL~~a~~vI~~d~-- 649 (723)
.|||+..+..++.++..|+..|+.+..++|++++++|..+++.|+++ +..+||| +|++++.|||+ .+++||+++.
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLV-ATdi~e~GlDi-~v~~VI~~~~~k 400 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILV-ATDAIGMGLNL-SIRRIIFYSLIK 400 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEE-ECGGGGSSCCC-CBSEEEESCSBC
T ss_pred CEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEE-eCcHHHCCcCc-CccEEEECCccc
Confidence 37888889999999999999999999999999999999999999972 3566555 66999999999 9999999999
Q ss_pred ------------CCChhhHHHHHHhhhhcCCc-ccEEEEEEEe
Q 004925 650 ------------WWNPAVEQQAQDRIHRIGQY-KPIRIVRFLI 679 (723)
Q Consensus 650 ------------~wn~~~~~Q~iGRi~R~Gq~-~~V~v~~l~~ 679 (723)
+++...+.|++||++|.|+. ..-.+|.+..
T Consensus 401 ~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~ 443 (677)
T 3rc3_A 401 PSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNH 443 (677)
T ss_dssp -----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESST
T ss_pred cccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEec
Confidence 78999999999999999987 3345554443
No 51
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=159.14 Aligned_cols=127 Identities=19% Similarity=0.237 Sum_probs=97.4
Q ss_pred cCcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEE
Q 004925 548 FQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLM 627 (723)
Q Consensus 548 ~~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~ 627 (723)
+..+.|+..|.++|... .++.|+|||++....++.++..|...|+.+..++|+++..+|..++++|+++ ...|||
T Consensus 27 v~~~~K~~~L~~ll~~~---~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g-~~~vLv- 101 (185)
T 2jgn_A 27 VEESDKRSFLLDLLNAT---GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG-KSPILV- 101 (185)
T ss_dssp CCGGGHHHHHHHHHHHC----CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT-SSSEEE-
T ss_pred eCcHHHHHHHHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC-CCeEEE-
Confidence 34578999999998764 3567999999999999999999999999999999999999999999999976 667655
Q ss_pred ecCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCC
Q 004925 628 SLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 681 (723)
Q Consensus 628 s~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~ 681 (723)
+|+++++|+|++.+++||++|+||++..+.|++||++|.|+... ++.|+...
T Consensus 102 aT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~--~~~~~~~~ 153 (185)
T 2jgn_A 102 ATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL--ATSFFNER 153 (185)
T ss_dssp EEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEE--EEEEECGG
T ss_pred EcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcE--EEEEEchh
Confidence 55999999999999999999999999999999999999997644 44456554
No 52
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.72 E-value=5.5e-17 Score=177.36 Aligned_cols=95 Identities=20% Similarity=0.147 Sum_probs=83.7
Q ss_pred CceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEEC-
Q 004925 570 SAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMD- 648 (723)
Q Consensus 570 ~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d- 648 (723)
+.++|||++.+..++.++..|+..|+.+..++|.+ ++.+++.|.++ ..+||| +|+++++|+|++. ++||.++
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g-~~~vLV-aT~v~~~GiDip~-~~VI~~~~ 260 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLT-DWDFVV-TTDISEMGANFRA-GRVIDPRR 260 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSS-CCSEEE-ECGGGGSSCCCCC-SEEEECCE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccC-CceEEE-ECCHHHhCcCCCC-CEEEECCC
Confidence 34899999999999999999999999999999965 46799999875 667654 6699999999999 9999988
Q ss_pred -------------------CCCChhhHHHHHHhhhhcCCccc
Q 004925 649 -------------------PWWNPAVEQQAQDRIHRIGQYKP 671 (723)
Q Consensus 649 -------------------~~wn~~~~~Q~iGRi~R~Gq~~~ 671 (723)
+|.+...+.|++||++|.|....
T Consensus 261 ~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g 302 (451)
T 2jlq_A 261 CLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED 302 (451)
T ss_dssp EEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCC
T ss_pred cccccccccccceeeecccccCCHHHHHHhccccCCCCCCCc
Confidence 88999999999999999997443
No 53
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.71 E-value=4.3e-17 Score=177.39 Aligned_cols=94 Identities=16% Similarity=0.114 Sum_probs=76.2
Q ss_pred CceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEE---
Q 004925 570 SAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL--- 646 (723)
Q Consensus 570 ~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~--- 646 (723)
+.++||||.....++.++..|+..|+++..++| ++|..++++|.++ ...||+ +|.++++|+|++ +++||+
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g-~~~vLV-aT~v~e~GiDip-v~~VI~~g~ 249 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQK-KPDFIL-ATDIAEMGANLC-VERVLDCRT 249 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------C-CCSEEE-ESSSTTCCTTCC-CSEEEECCE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCC-CceEEE-ECChhheeeccC-ceEEEeCCc
Confidence 469999999999999999999999999999999 4688999999876 677654 669999999999 999985
Q ss_pred ----------------ECCCCChhhHHHHHHhhhhcCCcc
Q 004925 647 ----------------MDPWWNPAVEQQAQDRIHRIGQYK 670 (723)
Q Consensus 647 ----------------~d~~wn~~~~~Q~iGRi~R~Gq~~ 670 (723)
++.|.++..+.|++||++|.|...
T Consensus 250 ~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~ 289 (440)
T 1yks_A 250 AFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRD 289 (440)
T ss_dssp EEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred cceeeecccccceeeccccccCHHHHHHhccccCCCCCCC
Confidence 899999999999999999985443
No 54
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.71 E-value=2.7e-17 Score=180.07 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=85.0
Q ss_pred CceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEE---
Q 004925 570 SAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL--- 646 (723)
Q Consensus 570 ~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~--- 646 (723)
+.++|||+.....++.++..|+..|+.+..++|. +|..++++|.++ ..+|| ++|+++++|+|++. ++||.
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g-~~~iL-VaT~v~~~GiDip~-~~VI~~G~ 262 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNG-DWDFV-ITTDISEMGANFGA-SRVIDCRK 262 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSC-CCSEE-EESSCC---CCCSC-SEEEECCE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCC-CceEE-EECChHHhCeecCC-CEEEECCc
Confidence 4699999999999999999999999999999984 677899999875 66755 56699999999998 99998
Q ss_pred -----------------ECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCC
Q 004925 647 -----------------MDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 681 (723)
Q Consensus 647 -----------------~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~ 681 (723)
|++|.++..+.|++||++|.|.... ..|.|+...
T Consensus 263 ~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G-~~~~~~~~~ 313 (459)
T 2z83_A 263 SVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVG-DEYHYGGAT 313 (459)
T ss_dssp ECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCC-EEEEECSCC
T ss_pred ccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCC-eEEEEEccc
Confidence 7899999999999999999997433 233455553
No 55
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.71 E-value=4.1e-17 Score=185.01 Aligned_cols=96 Identities=18% Similarity=0.184 Sum_probs=84.0
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEE--
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL-- 646 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~-- 646 (723)
.+.++|||+.....++.++..|+..|+.+..++| ++|..++++|.++ ..+||| +|+++++|||++ +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~g-~~~VLV-aTdv~e~GIDip-v~~VI~~g 481 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKNG-DWDFVI-TTDISEMGANFG-ASRVIDCR 481 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGTC-CCSEEE-ECGGGGTTCCCC-CSEEEECC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHCC-CceEEE-ECchhhcceeeC-CcEEEECC
Confidence 4569999999999999999999999999999999 3789999999876 677655 669999999999 999997
Q ss_pred ------------------ECCCCChhhHHHHHHhhhhcCCccc
Q 004925 647 ------------------MDPWWNPAVEQQAQDRIHRIGQYKP 671 (723)
Q Consensus 647 ------------------~d~~wn~~~~~Q~iGRi~R~Gq~~~ 671 (723)
+++|.++..+.|++||++|.|....
T Consensus 482 ~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G 524 (673)
T 2wv9_A 482 KSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIG 524 (673)
T ss_dssp EECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCC
T ss_pred CcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCC
Confidence 5688899999999999999944433
No 56
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.70 E-value=2.5e-17 Score=157.64 Aligned_cols=124 Identities=19% Similarity=0.190 Sum_probs=105.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEe
Q 004925 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMS 628 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s 628 (723)
....|+..|.+++.. .+.|+|||+++...++.+...|...|+.+..++|++++.+|..++++|+++ ...||| +
T Consensus 38 ~~~~K~~~L~~~l~~-----~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g-~~~vLv-a 110 (191)
T 2p6n_A 38 KEEAKMVYLLECLQK-----TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG-KKDVLV-A 110 (191)
T ss_dssp CGGGHHHHHHHHHTT-----SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHT-SCSEEE-E
T ss_pred ChHHHHHHHHHHHHh-----CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CCEEEE-E
Confidence 446799998888853 345899999999999999999999999999999999999999999999976 667655 6
Q ss_pred cCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCC
Q 004925 629 LKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 681 (723)
Q Consensus 629 ~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~ 681 (723)
|+++++|+|++.+++||+||+||++..+.|++||++|.|++..+ +.|+...
T Consensus 111 T~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~--i~l~~~~ 161 (191)
T 2p6n_A 111 TDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIA--TTFINKA 161 (191)
T ss_dssp CHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEE--EEEECTT
T ss_pred cCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEE--EEEEcCc
Confidence 69999999999999999999999999999999999999987544 3456554
No 57
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.70 E-value=3.7e-17 Score=188.93 Aligned_cols=112 Identities=14% Similarity=0.114 Sum_probs=94.1
Q ss_pred hcCCceEEEEcccHhHHHHHHHHHHh-----------CCCeEEEeecCCCHHHHHHHHHhhc-----CCCCceEEEEecC
Q 004925 567 RDGSAKGIVFSQFTSFLDLINYSLHK-----------SGVNCVQLVGSMSIPARDAAINRFT-----EDPDCKIFLMSLK 630 (723)
Q Consensus 567 ~~~~~KvIIF~~~~~~~~~l~~~L~~-----------~g~~~~~i~g~~~~~~r~~~i~~F~-----~~~~~~vll~s~~ 630 (723)
..++.++|||+.....++.++..|.. .++.+..++|+++.++|..+++.|. ++ ..+| |++|+
T Consensus 300 ~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g-~~kV-lVAT~ 377 (773)
T 2xau_A 300 TEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRP-GRKV-VISTN 377 (773)
T ss_dssp HSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSC-CEEE-EEECT
T ss_pred hcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCC-ceEE-EEeCc
Confidence 34567999999999999999999975 5889999999999999999999998 43 5565 55669
Q ss_pred CCcccccccccCEEEEECC------------------CCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCH
Q 004925 631 AGGVALNLTVASHVFLMDP------------------WWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTI 683 (723)
Q Consensus 631 ~~~eGlnL~~a~~vI~~d~------------------~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ 683 (723)
++++|||++.+++||.++. +.+...+.||+||++|. ++-..|.|+.+...
T Consensus 378 iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 378 IAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp HHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred HHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 9999999999999999666 78999999999999998 34456677765544
No 58
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.70 E-value=1.7e-15 Score=187.48 Aligned_cols=115 Identities=18% Similarity=0.129 Sum_probs=81.8
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccc-cCCCCccCCCCCCCCCCCCCCceEEEec-hh
Q 004925 29 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREI-RGTIGELDASSSSSTGLLGIKATLVICP-VA 106 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~ 106 (723)
.|.|.|..++..++.. . .+.+++.+||+|||+.|...+...+.. ....+. ...+.+++|+|+| ++
T Consensus 79 ~ln~iQs~~~~~al~~---~-~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~---------~~~~~~k~lyiaP~kA 145 (1724)
T 4f92_B 79 TLNRIQSKLYRAALET---D-ENLLLCAPTGAGKTNVALMCMLREIGKHINMDGT---------INVDDFKIIYIAPMRS 145 (1724)
T ss_dssp BCCHHHHHTHHHHHTC---C-CCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSS---------CCTTSCEEEEECSSHH
T ss_pred CCCHHHHHHHHHHHcC---C-CcEEEEeCCcchHHHHHHHHHHHHHHhhcccccc---------ccCCCCEEEEECCHHH
Confidence 6889999988876643 2 678999999999999985444432221 111000 0112367899999 78
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccccCCCCEEEechhhhHHh
Q 004925 107 AVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEAD 157 (723)
Q Consensus 107 l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ivi~t~~~l~~~ 157 (723)
|..|-.+++.+.+..-.+++..++|+..... .....++|+|+|++.+...
T Consensus 146 La~e~~~~l~~~~~~~gi~V~~~tGd~~~~~-~~~~~~~IlVtTpEkld~l 195 (1724)
T 4f92_B 146 LVQEMVGSFGKRLATYGITVAELTGDHQLCK-EEISATQIIVCTPEKWDII 195 (1724)
T ss_dssp HHHHHHHHHHHHHTTTTCCEEECCSSCSSCC-TTGGGCSEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEECCCCCCc-cccCCCCEEEECHHHHHHH
Confidence 9999999998877766788999999765433 3456789999999987544
No 59
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.70 E-value=8e-17 Score=150.74 Aligned_cols=125 Identities=14% Similarity=0.198 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 004925 552 TKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 631 (723)
Q Consensus 552 ~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~ 631 (723)
.|+..|.+++... ++.|+|||++....++.++..|...|+.+..++|+++..+|..++++|+++ ...+|+ +|++
T Consensus 16 ~K~~~l~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv-~T~~ 89 (165)
T 1fuk_A 16 YKYECLTDLYDSI----SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG-SSRILI-STDL 89 (165)
T ss_dssp GHHHHHHHHHHHT----TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEE-EEGG
T ss_pred hHHHHHHHHHHhC----CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcC-CCEEEE-EcCh
Confidence 3999999888754 567999999999999999999999999999999999999999999999976 667665 5599
Q ss_pred CcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCCHH
Q 004925 632 GGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIE 684 (723)
Q Consensus 632 ~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~e 684 (723)
+++|+|++.+++||++++||++..+.|++||++|.|+...+ +.|+..+..+
T Consensus 90 ~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~--~~~~~~~~~~ 140 (165)
T 1fuk_A 90 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVA--INFVTNEDVG 140 (165)
T ss_dssp GTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEE--EEEEETTTHH
T ss_pred hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE--EEEEcchHHH
Confidence 99999999999999999999999999999999999976544 4567776544
No 60
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.69 E-value=7.5e-16 Score=173.37 Aligned_cols=115 Identities=13% Similarity=0.064 Sum_probs=97.0
Q ss_pred chHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 004925 551 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 630 (723)
Q Consensus 551 s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~ 630 (723)
..|..++++.|.... ..+.++||||......+.|...|...|++...++|.+...+|..+..+|..+ .| +++|+
T Consensus 415 ~~K~~al~~~i~~~~--~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g---~V-lIATd 488 (844)
T 1tf5_A 415 EGKFKAVAEDVAQRY--MTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG---AV-TIATN 488 (844)
T ss_dssp HHHHHHHHHHHHHHH--HHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT---CE-EEEET
T ss_pred HHHHHHHHHHHHHHH--hcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC---eE-EEeCC
Confidence 569999999887653 2456899999999999999999999999999999998766665555555543 44 45669
Q ss_pred CCccccccc--------ccCEEEEECCCCChhhHHHHHHhhhhcCCccc
Q 004925 631 AGGVALNLT--------VASHVFLMDPWWNPAVEQQAQDRIHRIGQYKP 671 (723)
Q Consensus 631 ~~~eGlnL~--------~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~ 671 (723)
.++.|+|+. ...+||++|.|-++..+.|++||.+|.|..-.
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~ 537 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGI 537 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCe
Confidence 999999999 78899999999999999999999999997644
No 61
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.69 E-value=1.2e-16 Score=158.81 Aligned_cols=142 Identities=23% Similarity=0.310 Sum_probs=107.9
Q ss_pred CCccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec
Q 004925 25 DLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP 104 (723)
Q Consensus 25 ~~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P 104 (723)
.+...|+|||.+++..++.. +.+|++++||+|||.+++.++... . +++|||||
T Consensus 89 ~~~~~l~~~Q~~ai~~~~~~-----~~~ll~~~tG~GKT~~a~~~~~~~----~------------------~~~liv~P 141 (237)
T 2fz4_A 89 DAEISLRDYQEKALERWLVD-----KRGCIVLPTGSGKTHVAMAAINEL----S------------------TPTLIVVP 141 (237)
T ss_dssp CCCCCCCHHHHHHHHHHTTT-----SEEEEEESSSTTHHHHHHHHHHHS----C------------------SCEEEEES
T ss_pred cCCCCcCHHHHHHHHHHHhC-----CCEEEEeCCCCCHHHHHHHHHHHc----C------------------CCEEEEeC
Confidence 34568999999999987654 458999999999999998887754 1 58899999
Q ss_pred h-hhHHHHHHHHHhhcCCCCcE-EEEEeCCCCCCCccccCCCCEEEechhhhHHhhhhccCCCcccccccCccchhhhhh
Q 004925 105 V-AAVTQWVSEINRFTSVGSTK-VLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLV 182 (723)
Q Consensus 105 ~-~l~~qW~~ei~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~ivi~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (723)
. .|+.||.+++.++ ... +..+.|..+. ..+|+|+||+.+.......
T Consensus 142 ~~~L~~q~~~~~~~~----~~~~v~~~~g~~~~-------~~~i~v~T~~~l~~~~~~~--------------------- 189 (237)
T 2fz4_A 142 TLALAEQWKERLGIF----GEEYVGEFSGRIKE-------LKPLTVSTYDSAYVNAEKL--------------------- 189 (237)
T ss_dssp SHHHHHHHHHHHGGG----CGGGEEEESSSCBC-------CCSEEEEEHHHHHHTHHHH---------------------
T ss_pred CHHHHHHHHHHHHhC----CCCeEEEEeCCCCC-------cCCEEEEeHHHHHhhHHHh---------------------
Confidence 5 8899999999994 355 7777776543 4589999999886553210
Q ss_pred hhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCcCCCCCCCCCCCCCCccceeeEEEEeeccccccCCCcHH
Q 004925 183 VHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNT 262 (723)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~ 262 (723)
...|++|||||+|++.+.. .
T Consensus 190 ----------------------------------------------------------~~~~~llIiDEaH~l~~~~--~ 209 (237)
T 2fz4_A 190 ----------------------------------------------------------GNRFMLLIFDEVHHLPAES--Y 209 (237)
T ss_dssp ----------------------------------------------------------TTTCSEEEEECSSCCCTTT--H
T ss_pred ----------------------------------------------------------cccCCEEEEECCccCCChH--H
Confidence 1147999999999997764 3
Q ss_pred HHHHHhhhcCceEEEeCcCCCCc
Q 004925 263 AKAVLALESSYKWALSGTPLQNR 285 (723)
Q Consensus 263 ~~~l~~l~~~~~l~LTaTP~~n~ 285 (723)
.+.+..+...++++|||||..++
T Consensus 210 ~~i~~~~~~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 210 VQIAQMSIAPFRLGLTATFERED 232 (237)
T ss_dssp HHHHHTCCCSEEEEEEESCC---
T ss_pred HHHHHhccCCEEEEEecCCCCCC
Confidence 34445567889999999998765
No 62
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.69 E-value=1.1e-15 Score=189.26 Aligned_cols=85 Identities=13% Similarity=0.005 Sum_probs=66.3
Q ss_pred CeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEE----ECC------CCChhhHHHHHHhhh
Q 004925 595 VNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL----MDP------WWNPAVEQQAQDRIH 664 (723)
Q Consensus 595 ~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~----~d~------~wn~~~~~Q~iGRi~ 664 (723)
..++..||++++.+|..+.+.|.++ ..+||++| .+++.|+|++....||. |+. +.++..+.|++||++
T Consensus 1214 ~GIa~hHagL~~~~R~~VE~lF~~G-~i~VLvaT-~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAG 1291 (1724)
T 4f92_B 1214 NGVGYLHEGLSPMERRLVEQLFSSG-AIQVVVAS-RSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHAN 1291 (1724)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHHT-SBCEEEEE-GGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBC
T ss_pred CCEEEECCCCCHHHHHHHHHHHHCC-CCeEEEEC-hHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhcccc
Confidence 4578899999999999999999986 78877655 89999999996555552 222 357889999999999
Q ss_pred hcCCcccEEEEEEEeCC
Q 004925 665 RIGQYKPIRIVRFLIEN 681 (723)
Q Consensus 665 R~Gq~~~V~v~~l~~~~ 681 (723)
|.|....-.++.+....
T Consensus 1292 R~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1292 RPLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp CTTTCSCEEEEEEEEGG
T ss_pred CCCCCCceEEEEEecch
Confidence 99987665555455443
No 63
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.68 E-value=3.8e-15 Score=167.32 Aligned_cols=116 Identities=9% Similarity=0.026 Sum_probs=97.5
Q ss_pred chHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 004925 551 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 630 (723)
Q Consensus 551 s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~ 630 (723)
..|..++++.|.... ..+..+||||......+.|...|.+.|++...++|.+...++..+.++|+.+ .| +++|+
T Consensus 443 ~~K~~al~~~i~~~~--~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G---~V-tIATn 516 (922)
T 1nkt_A 443 EAKYIAVVDDVAERY--AKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG---GV-TVATN 516 (922)
T ss_dssp HHHHHHHHHHHHHHH--HTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT---CE-EEEET
T ss_pred HHHHHHHHHHHHHHH--hcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC---eE-EEecc
Confidence 469999999887653 3567899999999999999999999999999999998666665666777654 34 55669
Q ss_pred CCccccccccc----------------------------------------------------CEEEEECCCCChhhHHH
Q 004925 631 AGGVALNLTVA----------------------------------------------------SHVFLMDPWWNPAVEQQ 658 (723)
Q Consensus 631 ~~~eGlnL~~a----------------------------------------------------~~vI~~d~~wn~~~~~Q 658 (723)
.++.|+|+... .|||.++.|-+...+.|
T Consensus 517 mAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~q 596 (922)
T 1nkt_A 517 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 596 (922)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred hhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHH
Confidence 99999998853 59999999999999999
Q ss_pred HHHhhhhcCCcccE
Q 004925 659 AQDRIHRIGQYKPI 672 (723)
Q Consensus 659 ~iGRi~R~Gq~~~V 672 (723)
++||.+|.|..-..
T Consensus 597 r~GRTGRqGdpG~s 610 (922)
T 1nkt_A 597 LRGRSGRQGDPGES 610 (922)
T ss_dssp HHHTSSGGGCCEEE
T ss_pred HhcccccCCCCeeE
Confidence 99999999977443
No 64
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.67 E-value=2.7e-16 Score=177.19 Aligned_cols=102 Identities=21% Similarity=0.129 Sum_probs=86.8
Q ss_pred CceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEE-----
Q 004925 570 SAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHV----- 644 (723)
Q Consensus 570 ~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~v----- 644 (723)
+.++|||+.....++.+++.|+..|+++..++|. +|..++++|.++ ...||| +|+++++|||+. +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g-~~~VLV-aTdv~~rGiDi~-v~~VId~g~ 427 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLT-DWDFVV-TTDISEMGANFR-AGRVIDPRR 427 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHS-CCSEEE-ECGGGGTTCCCC-CSEEEECCE
T ss_pred CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCC-CcEEEE-ECcHHHcCcccC-ceEEEECcc
Confidence 4599999999999999999999999999999984 788899999876 666554 669999999996 8887
Q ss_pred ---------------EEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEe
Q 004925 645 ---------------FLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLI 679 (723)
Q Consensus 645 ---------------I~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~ 679 (723)
|++++|-++..+.||+||++|.|..... .|.|+.
T Consensus 428 ~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~-ai~l~~ 476 (618)
T 2whx_A 428 CLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDD-QYVFSG 476 (618)
T ss_dssp EEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCE-EEEECS
T ss_pred eecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCe-EEEEcc
Confidence 7788889999999999999999865443 344564
No 65
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.67 E-value=1.9e-14 Score=163.84 Aligned_cols=123 Identities=15% Similarity=0.113 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 632 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~ 632 (723)
++..+++.|..+.+ .+.++|||+.....++.|...|...|+++..++|++++.+|..++++|..+ .+.|+ ++|+++
T Consensus 424 ~~~~Ll~~l~~~~~--~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g-~~~VL-vaT~~l 499 (664)
T 1c4o_A 424 QILDLMEGIRERAA--RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLG-HYDCL-VGINLL 499 (664)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTT-SCSEE-EESCCC
T ss_pred hHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcC-CceEE-EccChh
Confidence 44555555655532 457999999999999999999999999999999999999999999999875 66655 566999
Q ss_pred cccccccccCEEEEECC-----CCChhhHHHHHHhhhhcCCcccEEEEEEEeCCC
Q 004925 633 GVALNLTVASHVFLMDP-----WWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENT 682 (723)
Q Consensus 633 ~eGlnL~~a~~vI~~d~-----~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t 682 (723)
++|+|++.+++||++|. |+++..+.|++||++|.|. -.++.|+...+
T Consensus 500 ~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~---G~~i~~~~~~~ 551 (664)
T 1c4o_A 500 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR---GEVWLYADRVS 551 (664)
T ss_dssp CTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT---CEEEEECSSCC
T ss_pred hcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCC---CEEEEEEcCCC
Confidence 99999999999999998 8999999999999999863 23444565554
No 66
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=6.2e-16 Score=146.18 Aligned_cols=124 Identities=15% Similarity=0.183 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCC
Q 004925 552 TKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 631 (723)
Q Consensus 552 ~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~ 631 (723)
.|+..|.+++.. .++.|+|||++....+..++..|...|+.+..++|+++..+|..++++|+++ ...+|| +|++
T Consensus 20 ~K~~~L~~ll~~----~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g-~~~vLv-aT~~ 93 (175)
T 2rb4_A 20 DKYQALCNIYGS----ITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG-KEKVLI-TTNV 93 (175)
T ss_dssp HHHHHHHHHHTT----SCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT-SCSEEE-ECCS
T ss_pred hHHHHHHHHHHh----CCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC-CCeEEE-Eecc
Confidence 488888888764 3567999999999999999999999999999999999999999999999976 667655 6699
Q ss_pred CcccccccccCEEEEECCC------CChhhHHHHHHhhhhcCCcccEEEEEEEeCCCH
Q 004925 632 GGVALNLTVASHVFLMDPW------WNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTI 683 (723)
Q Consensus 632 ~~eGlnL~~a~~vI~~d~~------wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t~ 683 (723)
+++|+|++.+++||+|++| +++..+.|++||++|.|+. -.++.|+..+..
T Consensus 94 ~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~~ 149 (175)
T 2rb4_A 94 CARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDEL 149 (175)
T ss_dssp CCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGGH
T ss_pred hhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccchH
Confidence 9999999999999999999 7789999999999999965 445667776653
No 67
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.67 E-value=5.3e-16 Score=151.29 Aligned_cols=125 Identities=16% Similarity=0.228 Sum_probs=108.9
Q ss_pred CcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEe
Q 004925 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMS 628 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s 628 (723)
..+.|+..|.+++... ++.++|||+.....++.+...|...|+.+..++|++++.+|..++++|.++ ..+|+| +
T Consensus 14 ~~~~k~~~l~~ll~~~----~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g-~~~vlv-a 87 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYVA----SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQG-EVRVLV-A 87 (212)
T ss_dssp CTTSHHHHHHHHHHHH----CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSS-SCCEEE-E
T ss_pred CHHHHHHHHHHHHHhC----CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCC-CCeEEE-e
Confidence 4567999999998754 567999999999999999999999999999999999999999999999976 677655 6
Q ss_pred cCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCC
Q 004925 629 LKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 681 (723)
Q Consensus 629 ~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~ 681 (723)
|+++++|+|++.+++||++++||++..+.|++||++|.|+.. .++.|+...
T Consensus 88 T~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~ 138 (212)
T 3eaq_A 88 TDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR 138 (212)
T ss_dssp CTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--B--EEEEEECGG
T ss_pred cChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCC--eEEEEEchh
Confidence 699999999999999999999999999999999999999774 344456554
No 68
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.66 E-value=1.4e-15 Score=170.64 Aligned_cols=118 Identities=14% Similarity=0.144 Sum_probs=100.0
Q ss_pred CcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEe
Q 004925 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMS 628 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s 628 (723)
....|..++.+.|... ...+..+||||......+.|...|.+.|++...++|.+...++..+.++|+.+ . ++++
T Consensus 422 ~~~~K~~al~~~i~~~--~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G---~-VtIA 495 (853)
T 2fsf_A 422 TEAEKIQAIIEDIKER--TAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA---A-VTIA 495 (853)
T ss_dssp SHHHHHHHHHHHHHHH--HTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT---C-EEEE
T ss_pred CHHHHHHHHHHHHHHH--hcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC---e-EEEe
Confidence 3456999999988765 34567899999999999999999999999999999998777776677888765 3 4556
Q ss_pred cCCCccccccccc-------------------------------------CEEEEECCCCChhhHHHHHHhhhhcCCccc
Q 004925 629 LKAGGVALNLTVA-------------------------------------SHVFLMDPWWNPAVEQQAQDRIHRIGQYKP 671 (723)
Q Consensus 629 ~~~~~eGlnL~~a-------------------------------------~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~ 671 (723)
|+.+|.|+|+... .|||.++.|-+...+.|++||.+|.|..-.
T Consensus 496 TnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~ 575 (853)
T 2fsf_A 496 TNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGS 575 (853)
T ss_dssp ESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred cccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCee
Confidence 6999999999853 599999999999999999999999997644
Q ss_pred E
Q 004925 672 I 672 (723)
Q Consensus 672 V 672 (723)
.
T Consensus 576 s 576 (853)
T 2fsf_A 576 S 576 (853)
T ss_dssp E
T ss_pred E
Confidence 3
No 69
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.65 E-value=5.7e-17 Score=180.90 Aligned_cols=100 Identities=15% Similarity=0.154 Sum_probs=82.4
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEE---
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVF--- 645 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI--- 645 (723)
.+.++|||++.+..++.+++.|++.|+++..++|++++++ |.++ ..+ +|++|+++++|||+. +++||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~-~~~-VLVATdVaerGIDId-V~~VI~~G 464 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTI-GDV-VVVATDALMTGYTGD-FDSVIDCN 464 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSS-SCE-EEEECTTHHHHCCCC-BSEEEECC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhC-CCc-EEEECChHHccCCCC-CcEEEecC
Confidence 4569999999999999999999999999999999998764 4443 335 555779999999986 99888
Q ss_pred -------EEC-----------CCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCC
Q 004925 646 -------LMD-----------PWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENT 682 (723)
Q Consensus 646 -------~~d-----------~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t 682 (723)
+|| .|-+...+.||+||++| |... . |.|+..+.
T Consensus 465 l~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G-~--i~lvt~~e 515 (666)
T 3o8b_A 465 TCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRG-I--YRFVTPGE 515 (666)
T ss_dssp EEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE-E--EEESCCCC
T ss_pred cccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCC-E--EEEEecch
Confidence 566 78888999999999999 6553 3 67777654
No 70
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.63 E-value=6e-14 Score=159.67 Aligned_cols=123 Identities=16% Similarity=0.171 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 632 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~ 632 (723)
++..++..|..+. ..+.++|||+.....++.|...|...|+++..++|++++.+|..++++|..+ .+.| |++|+++
T Consensus 430 ~~~~Ll~~l~~~~--~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g-~~~V-LVaT~~l 505 (661)
T 2d7d_A 430 QIDDLIGEIQARI--ERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLG-KYDV-LVGINLL 505 (661)
T ss_dssp HHHHHHHHHHHHH--TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHT-SCSE-EEESCCC
T ss_pred hHHHHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcC-CeEE-EEecchh
Confidence 4455555565553 3557999999999999999999999999999999999999999999999875 6665 4566999
Q ss_pred cccccccccCEEEEECC-----CCChhhHHHHHHhhhhcCCcccEEEEEEEeCCC
Q 004925 633 GVALNLTVASHVFLMDP-----WWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENT 682 (723)
Q Consensus 633 ~eGlnL~~a~~vI~~d~-----~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t 682 (723)
++|+|++.+++||++|. |+++..+.|++||++|.+ .-.++.|+...+
T Consensus 506 ~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~ 557 (661)
T 2d7d_A 506 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA---EGRVIMYADKIT 557 (661)
T ss_dssp STTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTST---TCEEEEECSSCC
T ss_pred hCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCC---CCEEEEEEeCCC
Confidence 99999999999999998 899999999999999962 233445666654
No 71
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.43 E-value=2.1e-17 Score=155.48 Aligned_cols=118 Identities=21% Similarity=0.258 Sum_probs=105.5
Q ss_pred chHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecC
Q 004925 551 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 630 (723)
Q Consensus 551 s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~ 630 (723)
+.|+..|.+++.. .++.|+|||+++...++.++..|+..|+.+..++|+++..+|..++++|+++ ...+| ++|+
T Consensus 15 ~~k~~~l~~ll~~----~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g-~~~vL-vaT~ 88 (170)
T 2yjt_D 15 EHKTALLVHLLKQ----PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG-RVNVL-VATD 88 (170)
Confidence 5688888888864 3557999999999999999999999999999999999999999999999976 66655 4669
Q ss_pred CCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEE
Q 004925 631 AGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRI 674 (723)
Q Consensus 631 ~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v 674 (723)
++++|+|++.+++||++++||++..+.|++||++|.|+...+.+
T Consensus 89 ~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~ 132 (170)
T 2yjt_D 89 VAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS 132 (170)
Confidence 99999999999999999999999999999999999998765543
No 72
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.59 E-value=1.7e-14 Score=142.40 Aligned_cols=110 Identities=14% Similarity=0.044 Sum_probs=78.9
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHH-HHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-h
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAI-ALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-V 105 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~ 105 (723)
..|+|||.+++..++.. +++++..++|+|||++++ .++........ ...+||++| .
T Consensus 35 ~~~~~~Q~~~i~~~~~~-----~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~-----------------~~~~lil~Pt~ 92 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIEG-----HDVLAQAQSGTGKTGTFSIAALQRIDTSVK-----------------APQALMLAPTR 92 (224)
T ss_dssp CSCCHHHHHHHHHHHTT-----CCEEEECCTTSSHHHHHHHHHHHHCCTTCC-----------------SCCEEEECSSH
T ss_pred CCCcHHHHHHHHHHhcC-----CCEEEECCCCCcHHHHHHHHHHHHHhccCC-----------------CceEEEEECCH
Confidence 47999999999988764 778999999999999854 44443322111 258999999 5
Q ss_pred hhHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-CccccCCCCEEEechhhhHHhhh
Q 004925 106 AAVTQWVSEINRFTSVGSTKVLIYHGSNRER-SAKQFSEFDFVITTYSIIEADYR 159 (723)
Q Consensus 106 ~l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~ivi~t~~~l~~~~~ 159 (723)
.|..||.+++.++.......+..+.|..... ....+..++|+|+|++.+...+.
T Consensus 93 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~ 147 (224)
T 1qde_A 93 ELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQ 147 (224)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHH
Confidence 7899999999998876567778877755432 23334568999999999876644
No 73
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.58 E-value=1.7e-13 Score=150.71 Aligned_cols=117 Identities=14% Similarity=0.099 Sum_probs=96.2
Q ss_pred cchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEec
Q 004925 550 SSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 629 (723)
Q Consensus 550 ~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~ 629 (723)
...|..++++.|.... ..+.++||||......+.|.+.|.+.|++...++|+....++..+..+|..+ .| +++|
T Consensus 456 ~~eK~~al~~~I~~~~--~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g---~V-tVAT 529 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRY--KKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG---MV-TIAT 529 (822)
T ss_dssp HHHHHHHHHHHHHHHH--HHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT---CE-EEEE
T ss_pred HHHHHHHHHHHHHHHh--hCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC---eE-EEEc
Confidence 3569999999988763 2456899999999999999999999999999999986544444444555543 34 5566
Q ss_pred CCCccccccc--------ccCEEEEECCCCChhhHHHHHHhhhhcCCcccE
Q 004925 630 KAGGVALNLT--------VASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPI 672 (723)
Q Consensus 630 ~~~~eGlnL~--------~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V 672 (723)
+.++.|+|+. +..+||+++.|-++..+.|++||.+|.|..-..
T Consensus 530 dmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a 580 (822)
T 3jux_A 530 NMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGES 580 (822)
T ss_dssp TTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEE
T ss_pred chhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeE
Confidence 9999999997 667999999999999999999999999987543
No 74
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.58 E-value=1.2e-14 Score=141.46 Aligned_cols=112 Identities=21% Similarity=0.115 Sum_probs=81.6
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEech-h
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-A 106 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~-~ 106 (723)
..|+|||.+++..+++. +++++..++|+|||++++..+......... ..+...+||++|. .
T Consensus 22 ~~~~~~Q~~~i~~~~~~-----~~~li~~~TGsGKT~~~~~~~~~~l~~~~~-------------~~~~~~~lil~P~~~ 83 (207)
T 2gxq_A 22 TTPTPIQAAALPLALEG-----KDLIGQARTGTGKTLAFALPIAERLAPSQE-------------RGRKPRALVLTPTRE 83 (207)
T ss_dssp CSCCHHHHHHHHHHHTT-----CCEEEECCTTSCHHHHHHHHHHHHCCCCCC-------------TTCCCSEEEECSSHH
T ss_pred CCCCHHHHHHHHHHcCC-----CCEEEECCCCChHHHHHHHHHHHHHhhccc-------------cCCCCcEEEEECCHH
Confidence 47999999999998765 788999999999999865544433221110 0012689999995 8
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc--cccCCCCEEEechhhhHHhhh
Q 004925 107 AVTQWVSEINRFTSVGSTKVLIYHGSNRERSA--KQFSEFDFVITTYSIIEADYR 159 (723)
Q Consensus 107 l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~ivi~t~~~l~~~~~ 159 (723)
|..||.+++.++++ ...+..++|....... .....++|+|+|++.+...+.
T Consensus 84 L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~ 136 (207)
T 2gxq_A 84 LALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLR 136 (207)
T ss_dssp HHHHHHHHHHHHCT--TSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--cceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHH
Confidence 89999999999987 4777778776543211 112468999999999876654
No 75
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.58 E-value=9.5e-15 Score=149.26 Aligned_cols=126 Identities=17% Similarity=0.229 Sum_probs=106.6
Q ss_pred CcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEe
Q 004925 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMS 628 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s 628 (723)
..+.|+..|.+++... .+.++|||+.....++.|...|...|+.+..++|++++.+|..+++.|.++ ..+|+| +
T Consensus 11 ~~~~K~~~L~~ll~~~----~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g-~~~vLV-a 84 (300)
T 3i32_A 11 PVRGRLEVLSDLLYVA----SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQG-EVRVLV-A 84 (300)
T ss_dssp CSSSHHHHHHHHHHHH----CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHT-SCCEEE-E
T ss_pred CHHHHHHHHHHHHHhc----CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcC-CceEEE-E
Confidence 4567999999998765 467999999999999999999999999999999999999999999999976 677655 5
Q ss_pred cCCCcccccccccCEEEEECCCCChhhHHHHHHhhhhcCCcccEEEEEEEeCCC
Q 004925 629 LKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENT 682 (723)
Q Consensus 629 ~~~~~eGlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~l~~~~t 682 (723)
|+++++|+|++.+++||++++||++..+.|++||++|.|+.. ..|.|+....
T Consensus 85 T~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G--~~i~l~~~~e 136 (300)
T 3i32_A 85 TDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPRE 136 (300)
T ss_dssp CSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----C--EEEEEECSST
T ss_pred echhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCc--eEEEEeChHH
Confidence 699999999999999999999999999999999999999774 3444565543
No 76
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.57 E-value=3.2e-15 Score=146.57 Aligned_cols=118 Identities=21% Similarity=0.218 Sum_probs=84.9
Q ss_pred CCCCccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEE
Q 004925 23 PPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVI 102 (723)
Q Consensus 23 p~~~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv 102 (723)
+......|+|||.+++..++.. +++++..++|+|||++++..+.......... ...+++|||
T Consensus 27 ~~~~~~~l~~~Q~~~i~~~~~~-----~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~-------------~~~~~~lil 88 (216)
T 3b6e_A 27 SPEPELQLRPYQMEVAQPALEG-----KNIIICLPTGSGKTRVAVYIAKDHLDKKKKA-------------SEPGKVIVL 88 (216)
T ss_dssp CCSCCCCCCHHHHHHHHHHHTT-----CCEEEECSCHHHHHHHHHHHHHHHHHHHHHT-------------TCCCCEEEE
T ss_pred CccCCCCchHHHHHHHHHHhcC-----CCEEEEcCCCCCHHHHHHHHHHHHHhhcccc-------------cCCCcEEEE
Confidence 4445569999999999988764 7889999999999999987776543221100 012689999
Q ss_pred ech-hhHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCCc--cccCCCCEEEechhhhHHhhh
Q 004925 103 CPV-AAVTQ-WVSEINRFTSVGSTKVLIYHGSNRERSA--KQFSEFDFVITTYSIIEADYR 159 (723)
Q Consensus 103 ~P~-~l~~q-W~~ei~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~ivi~t~~~l~~~~~ 159 (723)
||. .|+.| |.+++.++... ...+..+.|....... ......+|+|+|++.+...+.
T Consensus 89 ~p~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~ 148 (216)
T 3b6e_A 89 VNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLL 148 (216)
T ss_dssp ESSHHHHHHHHHHTHHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHh
Confidence 995 67899 99999998864 5677777776543322 223468999999999977654
No 77
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.57 E-value=2.4e-14 Score=141.85 Aligned_cols=109 Identities=12% Similarity=0.015 Sum_probs=80.9
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHH-HHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hh
Q 004925 29 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIA-LVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VA 106 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~ 106 (723)
.++|||.+++..++.. +++++..++|+|||++++. ++........ ...+|||+| ..
T Consensus 46 ~~~~~Q~~~i~~~~~~-----~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~-----------------~~~~lil~Pt~~ 103 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRCG-----LDLIVQAKSGTGKTCVFSTIALDSLVLENL-----------------STQILILAPTRE 103 (230)
T ss_dssp SCCHHHHHHHHHHHTT-----CCEEEECCTTSSHHHHHHHHHHHHCCTTSC-----------------SCCEEEECSSHH
T ss_pred CCCHHHHHHHHHHhCC-----CCEEEECCCCCcHHHHHHHHHHHHHHhcCC-----------------CceEEEEeCCHH
Confidence 5899999999987764 7889999999999998544 3333322211 258999999 58
Q ss_pred hHHHHHHHHHhhcCCC-CcEEEEEeCCCCCC-CccccCCCCEEEechhhhHHhhh
Q 004925 107 AVTQWVSEINRFTSVG-STKVLIYHGSNRER-SAKQFSEFDFVITTYSIIEADYR 159 (723)
Q Consensus 107 l~~qW~~ei~~~~~~~-~~~~~~~~g~~~~~-~~~~~~~~~ivi~t~~~l~~~~~ 159 (723)
|..||.+++.++.... .+++..+.|..... ....+...+|+|+|++.+...+.
T Consensus 104 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~ 158 (230)
T 2oxc_A 104 IAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIE 158 (230)
T ss_dssp HHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHh
Confidence 9999999999987532 57788888865432 22334678999999999876643
No 78
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.56 E-value=3e-14 Score=138.51 Aligned_cols=111 Identities=19% Similarity=0.141 Sum_probs=80.7
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hh
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VA 106 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~ 106 (723)
..|+|||.+++..++.. +++++..++|+|||++++..+........ ...++||++| ..
T Consensus 24 ~~~~~~Q~~~i~~~~~~-----~~~lv~apTGsGKT~~~~~~~~~~~~~~~----------------~~~~~lil~Pt~~ 82 (206)
T 1vec_A 24 EKPSPIQEESIPIALSG-----RDILARAKNGTGKSGAYLIPLLERLDLKK----------------DNIQAMVIVPTRE 82 (206)
T ss_dssp CSCCHHHHHHHHHHHTT-----CCEEEECCSSSTTHHHHHHHHHHHCCTTS----------------CSCCEEEECSCHH
T ss_pred CCCCHHHHHHHHHHccC-----CCEEEECCCCCchHHHHHHHHHHHhcccC----------------CCeeEEEEeCcHH
Confidence 37999999999988764 78899999999999987654443322111 1157999999 57
Q ss_pred hHHHHHHHHHhhcCCC-CcEEEEEeCCCCCCCc--cccCCCCEEEechhhhHHhhh
Q 004925 107 AVTQWVSEINRFTSVG-STKVLIYHGSNRERSA--KQFSEFDFVITTYSIIEADYR 159 (723)
Q Consensus 107 l~~qW~~ei~~~~~~~-~~~~~~~~g~~~~~~~--~~~~~~~ivi~t~~~l~~~~~ 159 (723)
|..||.+++.++.... ...+..+.|....... ......+|+++|++.+...+.
T Consensus 83 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~ 138 (206)
T 1vec_A 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIK 138 (206)
T ss_dssp HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHH
Confidence 8999999999887543 5677777776543211 113567899999999876654
No 79
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.56 E-value=1.9e-14 Score=141.62 Aligned_cols=110 Identities=24% Similarity=0.214 Sum_probs=81.2
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hhh
Q 004925 29 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAA 107 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~l 107 (723)
.|+|||.+++..++.. +++++..++|+|||++++..+........ +..++||||| ..|
T Consensus 36 ~~~~~Q~~~i~~~~~~-----~~~li~~~TGsGKT~~~~~~~~~~~~~~~----------------~~~~~lil~Pt~~L 94 (220)
T 1t6n_A 36 HPSEVQHECIPQAILG-----MDVLCQAKSGMGKTAVFVLATLQQLEPVT----------------GQVSVLVMCHTREL 94 (220)
T ss_dssp CCCHHHHHHHHHHHTT-----CCEEEECCTTSCHHHHHHHHHHHHCCCCT----------------TCCCEEEECSCHHH
T ss_pred CCCHHHHHHHHHHhCC-----CCEEEECCCCCchhhhhhHHHHHhhhccC----------------CCEEEEEEeCCHHH
Confidence 5999999999988764 77899999999999988766654432211 1148999999 588
Q ss_pred HHHHHHHHHhhcCCC-CcEEEEEeCCCCCCCc-ccc--CCCCEEEechhhhHHhhh
Q 004925 108 VTQWVSEINRFTSVG-STKVLIYHGSNRERSA-KQF--SEFDFVITTYSIIEADYR 159 (723)
Q Consensus 108 ~~qW~~ei~~~~~~~-~~~~~~~~g~~~~~~~-~~~--~~~~ivi~t~~~l~~~~~ 159 (723)
..||.+++.++.... ..++..++|....... ..+ ...+|+++|++.+...+.
T Consensus 95 ~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~ 150 (220)
T 1t6n_A 95 AFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALAR 150 (220)
T ss_dssp HHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHH
Confidence 999999999987532 5778888886543211 111 346899999999876644
No 80
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.56 E-value=2.4e-14 Score=140.71 Aligned_cols=111 Identities=18% Similarity=0.111 Sum_probs=79.7
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hh
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VA 106 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~ 106 (723)
..++|+|.+++..++.. +++++..++|+|||++++..+........ ....+||++| ..
T Consensus 25 ~~~~~~Q~~~i~~~~~~-----~~~lv~a~TGsGKT~~~~~~~l~~l~~~~----------------~~~~~lil~Pt~~ 83 (219)
T 1q0u_A 25 YKPTEIQERIIPGALRG-----ESMVGQSQTGTGKTHAYLLPIMEKIKPER----------------AEVQAVITAPTRE 83 (219)
T ss_dssp CSCCHHHHHHHHHHHHT-----CCEEEECCSSHHHHHHHHHHHHHHCCTTS----------------CSCCEEEECSSHH
T ss_pred CCCCHHHHHHHHHHhCC-----CCEEEECCCCChHHHHHHHHHHHHHHhCc----------------CCceEEEEcCcHH
Confidence 36899999999998875 78899999999999986554443322111 1157999999 57
Q ss_pred hHHHHHHHHHhhcCCC----CcEEEEEeCCCCCCC--ccccCCCCEEEechhhhHHhhh
Q 004925 107 AVTQWVSEINRFTSVG----STKVLIYHGSNRERS--AKQFSEFDFVITTYSIIEADYR 159 (723)
Q Consensus 107 l~~qW~~ei~~~~~~~----~~~~~~~~g~~~~~~--~~~~~~~~ivi~t~~~l~~~~~ 159 (723)
|..||.+++.++.... ...+..+.|...... .......+|+|+|++.+...+.
T Consensus 84 L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~ 142 (219)
T 1q0u_A 84 LATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIR 142 (219)
T ss_dssp HHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHH
Confidence 8999999999987643 456667777543211 1112467899999999876543
No 81
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.55 E-value=2e-14 Score=143.10 Aligned_cols=115 Identities=16% Similarity=0.122 Sum_probs=82.2
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hh
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VA 106 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~ 106 (723)
..|+|+|.+++..++.. +++|+..++|+|||++++..+.......... ..+...+||++| ..
T Consensus 46 ~~~~~~Q~~~i~~~~~~-----~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~------------~~~~~~~lil~Pt~~ 108 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQG-----KDVLGAAKTGSGKTLAFLVPVLEALYRLQWT------------STDGLGVLIISPTRE 108 (236)
T ss_dssp CBCCHHHHHHHHHHHTT-----CCEEEECCTTSCHHHHHHHHHHHHHHHTTCC------------GGGCCCEEEECSSHH
T ss_pred CCCCHHHHHHHHHHhCC-----CCEEEEeCCCCcHHHHHHHHHHHHHHhhccc------------ccCCceEEEEeCCHH
Confidence 47899999999998765 7889999999999998765443322110000 001257899999 58
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-CccccCCCCEEEechhhhHHhhh
Q 004925 107 AVTQWVSEINRFTSVGSTKVLIYHGSNRER-SAKQFSEFDFVITTYSIIEADYR 159 (723)
Q Consensus 107 l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~ivi~t~~~l~~~~~ 159 (723)
|..||.+++.++.....+.+..++|..... ....+...+|+|+|++.+...+.
T Consensus 109 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~ 162 (236)
T 2pl3_A 109 LAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMD 162 (236)
T ss_dssp HHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHH
Confidence 999999999999875567888888865432 22334678999999999976644
No 82
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.53 E-value=8e-14 Score=138.68 Aligned_cols=110 Identities=17% Similarity=0.096 Sum_probs=76.7
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hhh
Q 004925 29 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAA 107 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~l 107 (723)
.|+|+|.+++..++.. +.+|+..++|+|||++++..+........ ....+|||+| ..|
T Consensus 52 ~~~~~Q~~ai~~i~~~-----~~~li~apTGsGKT~~~~l~~l~~l~~~~----------------~~~~~lil~Pt~~L 110 (237)
T 3bor_A 52 KPSAIQQRAIIPCIKG-----YDVIAQAQSGTGKTATFAISILQQLEIEF----------------KETQALVLAPTREL 110 (237)
T ss_dssp SCCHHHHHHHHHHHTT-----CCEEECCCSSHHHHHHHHHHHHHHCCTTS----------------CSCCEEEECSSHHH
T ss_pred CCCHHHHHHHHHHhCC-----CCEEEECCCCCcHHHHHHHHHHHHHHhcC----------------CCceEEEEECcHHH
Confidence 5999999999988764 77899999999999986555543332111 1258999999 578
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc-ccc--CCCCEEEechhhhHHhhh
Q 004925 108 VTQWVSEINRFTSVGSTKVLIYHGSNRERSA-KQF--SEFDFVITTYSIIEADYR 159 (723)
Q Consensus 108 ~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~-~~~--~~~~ivi~t~~~l~~~~~ 159 (723)
..||.+++.++.......+..+.|....... ..+ ...+|+++|++.+...+.
T Consensus 111 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~ 165 (237)
T 3bor_A 111 AQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLN 165 (237)
T ss_dssp HHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHH
Confidence 9999999999886555667777765433221 122 237899999999876643
No 83
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.52 E-value=4.5e-14 Score=141.45 Aligned_cols=111 Identities=20% Similarity=0.080 Sum_probs=81.2
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hh
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VA 106 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~ 106 (723)
..++|+|.+++..++.. +++++..++|+|||++++..+......... ...+||++| ..
T Consensus 64 ~~~~~~Q~~~i~~i~~~-----~~~lv~a~TGsGKT~~~~~~il~~l~~~~~----------------~~~~lil~Ptr~ 122 (249)
T 3ber_A 64 TKPTKIQIEAIPLALQG-----RDIIGLAETGSGKTGAFALPILNALLETPQ----------------RLFALVLTPTRE 122 (249)
T ss_dssp CSCCHHHHHHHHHHHTT-----CCEEEECCTTSCHHHHHHHHHHHHHHHSCC----------------SSCEEEECSSHH
T ss_pred CCCCHHHHHHHHHHhCC-----CCEEEEcCCCCCchhHhHHHHHHHHhcCCC----------------CceEEEEeCCHH
Confidence 37899999999988765 788999999999999876555433222111 147899999 57
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc--cccCCCCEEEechhhhHHhhh
Q 004925 107 AVTQWVSEINRFTSVGSTKVLIYHGSNRERSA--KQFSEFDFVITTYSIIEADYR 159 (723)
Q Consensus 107 l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~ivi~t~~~l~~~~~ 159 (723)
|..||.+++.++.......+..+.|....... ......+|+|+|++.+...+.
T Consensus 123 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~ 177 (249)
T 3ber_A 123 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLE 177 (249)
T ss_dssp HHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHH
Confidence 89999999999876445677777776543211 113567999999999876654
No 84
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.49 E-value=1.2e-13 Score=138.90 Aligned_cols=120 Identities=14% Similarity=0.115 Sum_probs=82.4
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hh
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VA 106 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~ 106 (723)
..|+|+|.+++..++.. +++++..++|+|||++++..+........... ..........+|||+| ..
T Consensus 44 ~~~~~~Q~~~i~~i~~~-----~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~-------~~~~~~~~~~~lil~Pt~~ 111 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILEH-----RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQ-------QRYSKTAYPKCLILAPTRE 111 (253)
T ss_dssp CSCCHHHHHHHHHHHTT-----CCEEEECCTTSSHHHHHHHHHHHHHHTTCC-------------CCBCCSEEEECSSHH
T ss_pred CCCCHHHHHHHHHHhCC-----CCEEEECCCCChHHHHHHHHHHHHHHhhcccc-------ccccccCCceEEEEECCHH
Confidence 36899999999988765 78899999999999987654443322111000 0000111258999999 57
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc--cccCCCCEEEechhhhHHhhh
Q 004925 107 AVTQWVSEINRFTSVGSTKVLIYHGSNRERSA--KQFSEFDFVITTYSIIEADYR 159 (723)
Q Consensus 107 l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~ivi~t~~~l~~~~~ 159 (723)
|..||.+++.++.......+..+.|....... ......+|+|+|++.+...+.
T Consensus 112 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~ 166 (253)
T 1wrb_A 112 LAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIE 166 (253)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHH
Confidence 99999999999887556777777776543221 112467999999999977654
No 85
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.46 E-value=3.4e-13 Score=134.95 Aligned_cols=112 Identities=17% Similarity=0.142 Sum_probs=79.3
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hh
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VA 106 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~ 106 (723)
..++|+|.+++..++.. +++++..++|+|||++++..+......... ....+|||+| ..
T Consensus 50 ~~~~~~Q~~~i~~~~~~-----~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~---------------~~~~~lil~Pt~~ 109 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLHG-----RELLASAPTGSGKTLAFSIPILMQLKQPAN---------------KGFRALIISPTRE 109 (245)
T ss_dssp CSCCHHHHHHHHHHHTT-----CCEEEECCTTSCHHHHHHHHHHHHHCSCCS---------------SSCCEEEECSSHH
T ss_pred CCCCHHHHHHHHHHhCC-----CCEEEECCCCCcHHHHHHHHHHHHHhhccc---------------CCceEEEEeCCHH
Confidence 36999999999987764 778999999999999865444432221111 1147899999 57
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEeCCCCC---CCccccCCCCEEEechhhhHHhhh
Q 004925 107 AVTQWVSEINRFTSVGSTKVLIYHGSNRE---RSAKQFSEFDFVITTYSIIEADYR 159 (723)
Q Consensus 107 l~~qW~~ei~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~ivi~t~~~l~~~~~ 159 (723)
|..||.+++.+++......+..+.|.... .........+|+|+|++.+...+.
T Consensus 110 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~ 165 (245)
T 3dkp_A 110 LASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLK 165 (245)
T ss_dssp HHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHH
Confidence 89999999999987555666665553211 112223567999999999977654
No 86
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.46 E-value=5.2e-13 Score=132.01 Aligned_cols=116 Identities=14% Similarity=0.088 Sum_probs=76.7
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hh
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VA 106 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~ 106 (723)
..++|+|.+++..++.. +++++..++|+|||+.++..+.......... ........+||++| ..
T Consensus 41 ~~~~~~Q~~~i~~~~~~-----~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~----------~~~~~~~~~lil~Pt~~ 105 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQG-----IDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS----------REQRNGPGMLVLTPTRE 105 (228)
T ss_dssp CSCCHHHHHHHHHHHTT-----CCEEEECCTTSCHHHHHHHHHHHHHC-------------------CCCSEEEECSSHH
T ss_pred CCCCHHHHHHHHHHhCC-----CCEEEECCCCChHHHHHHHHHHHHHHhccch----------hhccCCCcEEEEeCCHH
Confidence 47999999999988764 7889999999999998765443322111000 00011257899999 57
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc--cccCCCCEEEechhhhHHhhh
Q 004925 107 AVTQWVSEINRFTSVGSTKVLIYHGSNRERSA--KQFSEFDFVITTYSIIEADYR 159 (723)
Q Consensus 107 l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~ivi~t~~~l~~~~~ 159 (723)
|..||.+++.++... ...+..++|....... ......+|+|+|++.+.....
T Consensus 106 L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~ 159 (228)
T 3iuy_A 106 LALHVEAECSKYSYK-GLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQM 159 (228)
T ss_dssp HHHHHHHHHHHHCCT-TCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc-CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHH
Confidence 899999999998643 5666666665433221 123567999999999876543
No 87
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.44 E-value=4.8e-13 Score=135.07 Aligned_cols=114 Identities=11% Similarity=0.084 Sum_probs=80.7
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hhh
Q 004925 29 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAA 107 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~l 107 (723)
.|+|+|.+++..++.. +++|+..++|+|||++++..+.......... ......+|||+| ..|
T Consensus 76 ~~~~~Q~~~i~~~~~~-----~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~------------~~~~~~~lil~Pt~~L 138 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLEG-----RDLLAAAKTGSGKTLAFLIPAVELIVKLRFM------------PRNGTGVLILSPTREL 138 (262)
T ss_dssp BCCHHHHHHHHHHHHT-----CCCEECCCTTSCHHHHHHHHHHHHHHHTTCC------------GGGCCCEEEECSSHHH
T ss_pred CCCHHHHHHHHHHhCC-----CcEEEEccCCCCchHHHHHHHHHHHHhcccc------------ccCCceEEEEeCCHHH
Confidence 4899999999888775 7789999999999998755444322111000 001257899999 578
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCcc--ccCCCCEEEechhhhHHhhh
Q 004925 108 VTQWVSEINRFTSVGSTKVLIYHGSNRERSAK--QFSEFDFVITTYSIIEADYR 159 (723)
Q Consensus 108 ~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~ivi~t~~~l~~~~~ 159 (723)
..||.+++.+++......+..+.|........ .....+|+|+|++.+...+.
T Consensus 139 a~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~ 192 (262)
T 3ly5_A 139 AMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQ 192 (262)
T ss_dssp HHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHH
Confidence 99999999999876667777777755332211 12457899999999876654
No 88
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.37 E-value=1.4e-12 Score=130.06 Aligned_cols=116 Identities=14% Similarity=0.028 Sum_probs=81.1
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hh
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VA 106 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~ 106 (723)
..++|+|.+++..++.. +.+++..++|+|||+.++..+.......... .......+|||+| ..
T Consensus 50 ~~~~~~Q~~~i~~~~~g-----~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~-----------~~~~~~~~lil~Pt~~ 113 (242)
T 3fe2_A 50 TEPTAIQAQGWPVALSG-----LDMVGVAQTGSGKTLSYLLPAIVHINHQPFL-----------ERGDGPICLVLAPTRE 113 (242)
T ss_dssp CSCCHHHHHHHHHHHHT-----CCEEEEECTTSCHHHHHHHHHHHHHHTSCCC-----------CTTCCCSEEEECSSHH
T ss_pred CCCCHHHHHHHHHHhCC-----CCEEEECCCcCHHHHHHHHHHHHHHHhcccc-----------ccCCCCEEEEEeCcHH
Confidence 36899999999988765 7889999999999998655444322211100 0011257899999 67
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCc--cccCCCCEEEechhhhHHhhh
Q 004925 107 AVTQWVSEINRFTSVGSTKVLIYHGSNRERSA--KQFSEFDFVITTYSIIEADYR 159 (723)
Q Consensus 107 l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~ivi~t~~~l~~~~~ 159 (723)
|..||.+.+.++.......+..++|....... .....++|+|+|++.+...+.
T Consensus 114 L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~ 168 (242)
T 3fe2_A 114 LAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE 168 (242)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHH
Confidence 88999999998876556777777776533221 112457999999999976654
No 89
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.30 E-value=2.8e-10 Score=126.84 Aligned_cols=112 Identities=11% Similarity=0.049 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEE-EecCCCc
Q 004925 555 EALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFL-MSLKAGG 633 (723)
Q Consensus 555 ~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll-~s~~~~~ 633 (723)
..+.+.|..++.. .+.++|||......++.+...|.. ++ ..+.|.. .+|..++++|..++ .|++ +.+.+.+
T Consensus 370 ~~~~~~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~--~il~~V~~~~~~ 441 (540)
T 2vl7_A 370 PIYSILLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK--YLVMLVMRAKES 441 (540)
T ss_dssp HHHHHHHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC--CEEEEEC-----
T ss_pred HHHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC--eEEEEEecCcee
Confidence 5566666666544 345899999999999888888765 33 3445543 46889999998743 3343 2569999
Q ss_pred ccccccc----cCEEEEECCCCChh------------------------------hHHHHHHhhhhcCCcccEEE
Q 004925 634 VALNLTV----ASHVFLMDPWWNPA------------------------------VEQQAQDRIHRIGQYKPIRI 674 (723)
Q Consensus 634 eGlnL~~----a~~vI~~d~~wn~~------------------------------~~~Q~iGRi~R~Gq~~~V~v 674 (723)
||||++. ++.||+...|+.+. .+.|++||+.|--+...+.+
T Consensus 442 EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~ 516 (540)
T 2vl7_A 442 EGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIY 516 (540)
T ss_dssp ----------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEE
T ss_pred cceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEE
Confidence 9999996 88899999886332 24599999999766666533
No 90
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.23 E-value=1.3e-10 Score=119.44 Aligned_cols=111 Identities=17% Similarity=0.102 Sum_probs=76.7
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHH-HHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-h
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAI-ALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-V 105 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~ 105 (723)
..+.|+|..++..++.. .+ ++.|+..++|+|||+..+ .++........ ...+|||+| .
T Consensus 113 ~~pt~iQ~~ai~~il~~--~~-~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~-----------------~~~~lil~Ptr 172 (300)
T 3fmo_B 113 NRPSKIQENALPLMLAE--PP-QNLIAQSQSGTGKTAAFVLAMLSQVEPANK-----------------YPQCLCLSPTY 172 (300)
T ss_dssp CSCCHHHHHHHHHHTSS--SC-CCEEEECCTTSSHHHHHHHHHHHHCCTTSC-----------------SCCEEEECSSH
T ss_pred CCCCHHHHHHHHHHHcC--CC-CeEEEECCCCCCccHHHHHHHHHhhhccCC-----------------CceEEEEcCcH
Confidence 36789999999876542 12 678999999999999865 33433322111 136899999 5
Q ss_pred hhHHHHHHHHHhhcCC-CCcEEEEEeCCCCCCCccccCCCCEEEechhhhHHhhh
Q 004925 106 AAVTQWVSEINRFTSV-GSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYR 159 (723)
Q Consensus 106 ~l~~qW~~ei~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~ivi~t~~~l~~~~~ 159 (723)
.|..|+.+.+..+... ....+....|....... .....+|+|+|+..+...+.
T Consensus 173 eLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~IlV~TP~~l~~~l~ 226 (300)
T 3fmo_B 173 ELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-QKISEQIVIGTPGTVLDWCS 226 (300)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-CCCCCSEEEECHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-hcCCCCEEEECHHHHHHHHH
Confidence 7889999998887642 25667777765543322 24567899999999876653
No 91
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.04 E-value=1.3e-08 Score=114.52 Aligned_cols=97 Identities=20% Similarity=0.130 Sum_probs=66.6
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHh-cCccccCCCCccCCCCCCCCCCCCCCceEEEechh-
Q 004925 29 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVL-AKREIRGTIGELDASSSSSTGLLGIKATLVICPVA- 106 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~- 106 (723)
++.|-|..++-.+++ |-|....+|+|||++++.-+. ..+. . +.++||+|..
T Consensus 79 ~Pt~VQ~~~ip~Llq-------G~IaeakTGeGKTLvf~Lp~~L~aL~--G------------------~qv~VvTPTre 131 (997)
T 2ipc_A 79 RHFDVQLIGGAVLHE-------GKIAEMKTGEGKTLVATLAVALNALT--G------------------KGVHVVTVNDY 131 (997)
T ss_dssp CCCHHHHHHHHHHHT-------TSEEECCSTHHHHHHHHHHHHHHHTT--C------------------SCCEEEESSHH
T ss_pred CCcHHHHhhcccccC-------CceeeccCCCchHHHHHHHHHHHHHh--C------------------CCEEEEeCCHH
Confidence 778899999887654 238889999999998743332 2211 1 4689999965
Q ss_pred hH---HHHHHHHHhhcCCCCcEEEEEeCCCCCCCccccCCCCEEEechhhhH
Q 004925 107 AV---TQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIE 155 (723)
Q Consensus 107 l~---~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ivi~t~~~l~ 155 (723)
|. ..|...+.+++ .+.+..+.|+............+|++.|+..+.
T Consensus 132 LA~Qdae~m~~l~~~l---GLsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlg 180 (997)
T 2ipc_A 132 LARRDAEWMGPVYRGL---GLSVGVIQHASTPAERRKAYLADVTYVTNSELG 180 (997)
T ss_dssp HHHHHHHHHHHHHHTT---TCCEEECCTTCCHHHHHHHHTSSEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHHhc---CCeEEEEeCCCCHHHHHHHcCCCEEEECchhhh
Confidence 54 44666666665 577888887654333333346799999999983
No 92
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.68 E-value=4.5e-08 Score=96.69 Aligned_cols=109 Identities=15% Similarity=0.109 Sum_probs=64.5
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEech-h
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-A 106 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~-~ 106 (723)
.+++++|.+++..+... +..++..++|+|||.....++.......... ....+++++|. .
T Consensus 60 ~p~~~~q~~~i~~i~~g-----~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~--------------~~~~~l~~~p~~~ 120 (235)
T 3llm_A 60 LPVKKFESEILEAISQN-----SVVIIRGATGCGKTTQVPQFILDDFIQNDRA--------------AECNIVVTQPRRI 120 (235)
T ss_dssp SGGGGGHHHHHHHHHHC-----SEEEEECCTTSSHHHHHHHHHHHHHHHTTCG--------------GGCEEEEEESSHH
T ss_pred CChHHHHHHHHHHHhcC-----CEEEEEeCCCCCcHHhHHHHHhcchhhcCCC--------------CceEEEEeccchH
Confidence 36788999988887664 6678999999999976544333221111100 01367888895 4
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCccc--cCCCCEEEechhhhHHhhh
Q 004925 107 AVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQ--FSEFDFVITTYSIIEADYR 159 (723)
Q Consensus 107 l~~qW~~ei~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~ivi~t~~~l~~~~~ 159 (723)
+..|..+.+.+.+.........+ +. +.... ....+|+++|...+...+.
T Consensus 121 la~q~~~~~~~~~~~~~~~~~g~-~~---~~~~~~~~~~~~Ivv~Tpg~l~~~l~ 171 (235)
T 3llm_A 121 SAVSVAERVAFERGEEPGKSCGY-SV---RFESILPRPHASIMFCTVGVLLRKLE 171 (235)
T ss_dssp HHHHHHHHHHHTTTCCTTSSEEE-EE---TTEEECCCSSSEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCceEEE-ee---chhhccCCCCCeEEEECHHHHHHHHH
Confidence 66787777776654211111111 10 11111 1456799999988876643
No 93
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.59 E-value=1.2e-07 Score=105.93 Aligned_cols=80 Identities=13% Similarity=0.112 Sum_probs=61.7
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hhh
Q 004925 29 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAA 107 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~l 107 (723)
.+||+|++.+..+.+....+ +.+++..++|+|||+..+.-+.. .. .+++|++| ..+
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~-~~~~~~a~TGtGKT~~~l~p~l~----~~------------------~~v~i~~pt~~l 59 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNN-FLVALNAPTGSGKTLFSLLVSLE----VK------------------PKVLFVVRTHNE 59 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTT-CEEEEECCTTSSHHHHHHHHHHH----HC------------------SEEEEEESSGGG
T ss_pred CCCHHHHHHHHHHHHHHHcC-CcEEEECCCCccHHHHHHHHHHh----CC------------------CeEEEEcCCHHH
Confidence 68999999988777666555 77888999999999987655443 11 58999999 568
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeC
Q 004925 108 VTQWVSEINRFTSVGSTKVLIYHG 131 (723)
Q Consensus 108 ~~qW~~ei~~~~~~~~~~~~~~~g 131 (723)
..|+.+++........+++..+.|
T Consensus 60 ~~q~~~~~~~l~~~~~~~~~~l~g 83 (551)
T 3crv_A 60 FYPIYRDLTKIREKRNITFSFLVG 83 (551)
T ss_dssp HHHHHHHHTTCCCSSCCCEEECCC
T ss_pred HHHHHHHHHHHhhhcCccEEEEcc
Confidence 899999998875544566666655
No 94
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.59 E-value=0.00013 Score=83.00 Aligned_cols=72 Identities=26% Similarity=0.258 Sum_probs=54.6
Q ss_pred CCCccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEe
Q 004925 24 PDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVIC 103 (723)
Q Consensus 24 ~~~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~ 103 (723)
..+...|-+.|++++..++... .=.|+..++|+|||.|.+.++..+.... .++||++
T Consensus 184 ~~~~~~LN~~Q~~AV~~al~~~----~~~lI~GPPGTGKT~ti~~~I~~l~~~~-------------------~~ILv~a 240 (646)
T 4b3f_X 184 TFFNTCLDTSQKEAVLFALSQK----ELAIIHGPPGTGKTTTVVEIILQAVKQG-------------------LKVLCCA 240 (646)
T ss_dssp CCSSTTCCHHHHHHHHHHHHCS----SEEEEECCTTSCHHHHHHHHHHHHHHTT-------------------CCEEEEE
T ss_pred cccCCCCCHHHHHHHHHHhcCC----CceEEECCCCCCHHHHHHHHHHHHHhCC-------------------CeEEEEc
Confidence 3345689999999999988641 2357888999999999988887765432 5899999
Q ss_pred chh-hHHHHHHHHHhh
Q 004925 104 PVA-AVTQWVSEINRF 118 (723)
Q Consensus 104 P~~-l~~qW~~ei~~~ 118 (723)
|.+ -+++-..-+...
T Consensus 241 ~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 241 PSNIAVDNLVERLALC 256 (646)
T ss_dssp SSHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHhc
Confidence 965 467777767654
No 95
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.25 E-value=0.00072 Score=76.38 Aligned_cols=68 Identities=21% Similarity=0.209 Sum_probs=50.5
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhh
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 107 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l 107 (723)
..|-+.|..++..++.. +-.++..++|+|||.++..++..+..... +++|+++|.+.
T Consensus 179 ~~ln~~Q~~av~~~l~~-----~~~li~GppGTGKT~~~~~~i~~l~~~~~------------------~~ilv~a~tn~ 235 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQR-----PLSLIQGPPGTGKTVTSATIVYHLARQGN------------------GPVLVCAPSNI 235 (624)
T ss_dssp CCCCHHHHHHHHHHHTC-----SEEEEECCTTSCHHHHHHHHHHHHHTSSS------------------CCEEEEESSHH
T ss_pred CCCCHHHHHHHHHHhcC-----CCeEEECCCCCCHHHHHHHHHHHHHHcCC------------------CeEEEEeCcHH
Confidence 46889999999987753 45688889999999998887766543221 68999999654
Q ss_pred -HHHHHHHHHhh
Q 004925 108 -VTQWVSEINRF 118 (723)
Q Consensus 108 -~~qW~~ei~~~ 118 (723)
+.+-...+.+.
T Consensus 236 A~~~l~~~l~~~ 247 (624)
T 2gk6_A 236 AVDQLTEKIHQT 247 (624)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 56666666554
No 96
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.93 E-value=0.0017 Score=75.00 Aligned_cols=68 Identities=21% Similarity=0.209 Sum_probs=50.2
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhh
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 107 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l 107 (723)
..|-+.|.+++..++.. +-.++...+|+|||.++..++..+..... +++|+++|.+.
T Consensus 355 ~~Ln~~Q~~Av~~~l~~-----~~~lI~GppGTGKT~ti~~~i~~l~~~~~------------------~~ilv~a~tn~ 411 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQR-----PLSLIQGPPGTGKTVTSATIVYHLARQGN------------------GPVLVCAPSNI 411 (800)
T ss_dssp CCCCHHHHHHHHHHHTS-----SEEEEECCTTSCHHHHHHHHHHHHHTTCS------------------SCEEEEESSHH
T ss_pred cCCCHHHHHHHHHhccC-----CeEEEEcCCCCCHHHHHHHHHHHHHHcCC------------------CcEEEEcCcHH
Confidence 46889999999987653 45688899999999998887776543221 68999999664
Q ss_pred -HHHHHHHHHhh
Q 004925 108 -VTQWVSEINRF 118 (723)
Q Consensus 108 -~~qW~~ei~~~ 118 (723)
+.+-.+.+.+.
T Consensus 412 A~~~l~~~l~~~ 423 (800)
T 2wjy_A 412 AVDQLTEKIHQT 423 (800)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 56655556543
No 97
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.0016 Score=75.23 Aligned_cols=68 Identities=19% Similarity=0.296 Sum_probs=50.5
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhh
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 107 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l 107 (723)
..|-+.|.+++..++.. +-.++..++|+|||.++..++..+..... .++|+++|.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~~-----~~~lI~GppGTGKT~~i~~~i~~l~~~~~------------------~~ILv~a~tn~ 415 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQR-----PLSLIQGPPGTGKTVTSATIVYHLSKIHK------------------DRILVCAPSNV 415 (802)
T ss_dssp CCCCHHHHHHHHHHTTC-----SEEEEECSTTSSHHHHHHHHHHHHHHHHC------------------CCEEEEESSHH
T ss_pred ccCCHHHHHHHHHHhcC-----CCEEEECCCCCCHHHHHHHHHHHHHhCCC------------------CeEEEEcCcHH
Confidence 46889999999987642 44688889999999998877765543222 68999999654
Q ss_pred -HHHHHHHHHhh
Q 004925 108 -VTQWVSEINRF 118 (723)
Q Consensus 108 -~~qW~~ei~~~ 118 (723)
+.+-...+.+.
T Consensus 416 A~d~l~~rL~~~ 427 (802)
T 2xzl_A 416 AVDHLAAKLRDL 427 (802)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 56666666654
No 98
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.78 E-value=0.0022 Score=71.36 Aligned_cols=64 Identities=17% Similarity=0.112 Sum_probs=47.8
Q ss_pred ccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechh
Q 004925 27 ITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVA 106 (723)
Q Consensus 27 ~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~ 106 (723)
...|-+.|+.++..++.. +..++.-.+|+|||.++.+++..+...+ .++++++|..
T Consensus 187 ~~~L~~~Q~~Av~~~~~~-----~~~~I~G~pGTGKTt~i~~l~~~l~~~g-------------------~~Vl~~ApT~ 242 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGH-----RLVVLTGGPGTGKSTTTKAVADLAESLG-------------------LEVGLCAPTG 242 (574)
T ss_dssp TTTCCHHHHHHHHHHTTC-----SEEEEECCTTSCHHHHHHHHHHHHHHTT-------------------CCEEEEESSH
T ss_pred cCCCCHHHHHHHHHHHhC-----CEEEEEcCCCCCHHHHHHHHHHHHHhcC-------------------CeEEEecCcH
Confidence 457889999999987643 5678889999999999877776554321 5889999977
Q ss_pred hHHHHHHH
Q 004925 107 AVTQWVSE 114 (723)
Q Consensus 107 l~~qW~~e 114 (723)
-......+
T Consensus 243 ~Aa~~L~e 250 (574)
T 3e1s_A 243 KAARRLGE 250 (574)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhHh
Confidence 65544443
No 99
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=96.71 E-value=0.00078 Score=75.81 Aligned_cols=115 Identities=10% Similarity=0.071 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEe-cCCC
Q 004925 554 IEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMS-LKAG 632 (723)
Q Consensus 554 l~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s-~~~~ 632 (723)
+..+.+.|..++...++ .++||......++.+...|+. +... ...+++..++..++++|. + ..-||+.. ..++
T Consensus 433 ~~~~~~~i~~l~~~~~g-~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~-~~~vL~~v~~gsf 506 (620)
T 4a15_A 433 LDRMATVIEDIILKVKK-NTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-R-DHGTIFAVSGGRL 506 (620)
T ss_dssp HHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-T-SCCEEEEETTSCC
T ss_pred HHHHHHHHHHHHHhCCC-CEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-c-CCcEEEEEecCce
Confidence 45566666666554454 577777777777877777762 2222 444555678999999999 3 44455544 3599
Q ss_pred ccccccc--ccCEEEEECCCCCh-----------------------------hhHHHHHHhhhhcCCcccEEE
Q 004925 633 GVALNLT--VASHVFLMDPWWNP-----------------------------AVEQQAQDRIHRIGQYKPIRI 674 (723)
Q Consensus 633 ~eGlnL~--~a~~vI~~d~~wn~-----------------------------~~~~Q~iGRi~R~Gq~~~V~v 674 (723)
+||||++ .++.||+.-.|+-+ ....|++||+.|--+...|.+
T Consensus 507 ~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~ 579 (620)
T 4a15_A 507 SEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACV 579 (620)
T ss_dssp --------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEE
T ss_pred eccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEE
Confidence 9999998 57888888777532 123599999999777666544
No 100
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=96.68 E-value=0.0013 Score=51.19 Aligned_cols=50 Identities=28% Similarity=0.686 Sum_probs=43.9
Q ss_pred cccccccccccCCCCCcccc-cCCccchhhhhhhhcCcCCCCCCCCCCCcc
Q 004925 464 HVQQVCGLCNDLADDPVVTN-CGHAFCKACLFDSSASKFVAKCPTCSIPLT 513 (723)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (723)
.....|.+|.+...+|+.+. |+|.||..|+...........||.|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 34578999999999999999 999999999999888766789999999743
No 101
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=96.41 E-value=0.0017 Score=52.98 Aligned_cols=49 Identities=29% Similarity=0.700 Sum_probs=43.4
Q ss_pred cccccccccccCCCCCcccc-cCCccchhhhhhhhcCcCCCCCCCCCCCc
Q 004925 464 HVQQVCGLCNDLADDPVVTN-CGHAFCKACLFDSSASKFVAKCPTCSIPL 512 (723)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (723)
.....|.+|.+...+|+.++ |||.||..|+...........||.|+..+
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 34578999999999999999 99999999999888766678999999886
No 102
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.35 E-value=0.0033 Score=47.53 Aligned_cols=50 Identities=28% Similarity=0.656 Sum_probs=43.0
Q ss_pred ccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcccc
Q 004925 465 VQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 515 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (723)
....|.+|.+...+|+.+.|||.||..|+..... .....||.|+..+..+
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHRFCESCMAALLS-SSSPKCTACQESIVKD 63 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHT-TSSCCCTTTCCCCCTT
T ss_pred cCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHH-hCcCCCCCCCcCCChh
Confidence 4567999999999999999999999999988875 4567899999987643
No 103
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.32 E-value=0.012 Score=63.79 Aligned_cols=63 Identities=16% Similarity=0.115 Sum_probs=47.8
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhh
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 107 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l 107 (723)
..|-+.|++++..++.....+.+..+|....|+|||.++..++..+...+. +.+++++|.+.
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~------------------~~il~~a~T~~ 85 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGE------------------TGIILAAPTHA 85 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTC------------------CCEEEEESSHH
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC------------------ceEEEecCcHH
Confidence 478899999999887654444346788899999999988877776654322 47899999765
Q ss_pred H
Q 004925 108 V 108 (723)
Q Consensus 108 ~ 108 (723)
.
T Consensus 86 A 86 (459)
T 3upu_A 86 A 86 (459)
T ss_dssp H
T ss_pred H
Confidence 4
No 104
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.31 E-value=0.0039 Score=48.18 Aligned_cols=52 Identities=29% Similarity=0.777 Sum_probs=44.4
Q ss_pred cccccccccccCCCCCcccccCCccchhhhhhhhcC-cCCCCCCCCCCCcccc
Q 004925 464 HVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSAS-KFVAKCPTCSIPLTVD 515 (723)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 515 (723)
.....|.+|.+...+|+.++|+|.||..|+...... .....||.|+..+..+
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 345689999999999999999999999999988764 3577999999987643
No 105
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=96.30 E-value=0.0051 Score=48.37 Aligned_cols=51 Identities=29% Similarity=0.826 Sum_probs=43.8
Q ss_pred ccccccccccCCCCCcccccCCccchhhhhhhhcCc-----CCCCCCCCCCCcccc
Q 004925 465 VQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASK-----FVAKCPTCSIPLTVD 515 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 515 (723)
....|.+|.+...+|+.++|||.||..|+....... ....||.|+..+...
T Consensus 11 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 456799999999999999999999999998877663 478999999998753
No 106
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.28 E-value=0.0073 Score=48.15 Aligned_cols=52 Identities=33% Similarity=0.832 Sum_probs=44.4
Q ss_pred cccccccccccCCCCCcccccCCccchhhhhhhhcC----cCCCCCCCCCCCcccc
Q 004925 464 HVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSAS----KFVAKCPTCSIPLTVD 515 (723)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 515 (723)
.....|.+|.+...+|+.++|+|.||..|+...... .....||.|+..+..+
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred cCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 345789999999999999999999999999887655 3588999999998753
No 107
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.28 E-value=0.0034 Score=45.71 Aligned_cols=46 Identities=28% Similarity=0.635 Sum_probs=39.8
Q ss_pred ccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcccc
Q 004925 465 VQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 515 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (723)
....|.+|.+...+|+.++|+|.||..|+.. ....||.|+..+...
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~-----~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA-----SGMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS-----SSSSCSSCCSSSSCC
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHcc-----CCCCCCcCCcEeecC
Confidence 4456999999999999999999999999976 467899999987754
No 108
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.24 E-value=0.0058 Score=48.77 Aligned_cols=51 Identities=31% Similarity=0.846 Sum_probs=44.1
Q ss_pred ccccccccccCCCCCcccccCCccchhhhhhhhcCc----CCCCCCCCCCCcccc
Q 004925 465 VQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASK----FVAKCPTCSIPLTVD 515 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 515 (723)
....|.+|.+...+|+.++|+|.||..|+....... ....||.|+..+..+
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred cCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 456899999999999999999999999998876663 488999999998754
No 109
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.22 E-value=0.0027 Score=50.32 Aligned_cols=49 Identities=31% Similarity=0.783 Sum_probs=42.6
Q ss_pred ccccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcc
Q 004925 463 EHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 513 (723)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (723)
......|.+|.+...+|++++|+|.||..|+...... ...||.|+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 3456789999999999999999999999999887754 668999999876
No 110
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.16 E-value=0.0054 Score=47.26 Aligned_cols=50 Identities=26% Similarity=0.681 Sum_probs=42.6
Q ss_pred cccccccccccCCCCCccc-ccCCccchhhhhhhhcCcCCCCCCCCCCCcccc
Q 004925 464 HVQQVCGLCNDLADDPVVT-NCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 515 (723)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (723)
.....|.+|.+...+|+.+ .|+|.||..|+...... ...||.|+..+...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY--SNRCPKCNIVVHQT 63 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH--CSSCTTTCCCCCSS
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc--CCcCCCcCcccCcc
Confidence 3467899999999999876 99999999999887754 57899999998754
No 111
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.15 E-value=0.003 Score=48.57 Aligned_cols=51 Identities=27% Similarity=0.627 Sum_probs=43.0
Q ss_pred cccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCccccc
Q 004925 464 HVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDF 516 (723)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (723)
.....|.+|.+...+++.++|+|.||..|+....... ..||.|+..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG--KRCALCRQEIPEDF 63 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS--SBCSSSCCBCCHHH
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC--CcCcCcCchhCHhh
Confidence 4456799999999999999999999999998766543 78999999987543
No 112
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=96.03 E-value=0.0049 Score=51.09 Aligned_cols=49 Identities=24% Similarity=0.589 Sum_probs=41.7
Q ss_pred ccccccccccCCCCCcc-cccCCccchhhhhhhhcCcCCCCCCCCCCCccc
Q 004925 465 VQQVCGLCNDLADDPVV-TNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 514 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (723)
....|.+|.+...+|+. ++|||.||..|+........ ..||.|+.++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR-AQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC-SBCTTTCCBCCG
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCc-CCCCCCCCcCCH
Confidence 34679999999999999 99999999999987766543 689999999863
No 113
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.01 E-value=0.005 Score=49.58 Aligned_cols=52 Identities=29% Similarity=0.645 Sum_probs=43.9
Q ss_pred cccccccccccCCCC----CcccccCCccchhhhhhhhcCc-CCCCCCCCCCCcccc
Q 004925 464 HVQQVCGLCNDLADD----PVVTNCGHAFCKACLFDSSASK-FVAKCPTCSIPLTVD 515 (723)
Q Consensus 464 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 515 (723)
.....|.+|.+...+ +..++|||.||..|+....... ....||.|+..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 345679999999888 8999999999999998887654 468999999987754
No 114
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.95 E-value=0.0097 Score=66.76 Aligned_cols=67 Identities=19% Similarity=0.231 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhh-HH
Q 004925 31 LRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA-VT 109 (723)
Q Consensus 31 ~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l-~~ 109 (723)
-+.|+.++..++.. +-.++.-.+|+|||.++..++..+....... ...+++++|..- ..
T Consensus 151 ~~~Q~~Ai~~~l~~-----~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~---------------~~~vll~APTg~AA~ 210 (608)
T 1w36_D 151 INWQKVAAAVALTR-----RISVISGGPGTGKTTTVAKLLAALIQMADGE---------------RCRIRLAAPTGKAAA 210 (608)
T ss_dssp CCHHHHHHHHHHTB-----SEEEEECCTTSTHHHHHHHHHHHHHHTCSSC---------------CCCEEEEBSSHHHHH
T ss_pred CHHHHHHHHHHhcC-----CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcC---------------CCeEEEEeCChhHHH
Confidence 46899999887643 6678899999999988766665443221110 147899999654 45
Q ss_pred HHHHHHHh
Q 004925 110 QWVSEINR 117 (723)
Q Consensus 110 qW~~ei~~ 117 (723)
+-.+.+..
T Consensus 211 ~L~e~~~~ 218 (608)
T 1w36_D 211 RLTESLGK 218 (608)
T ss_dssp HHHHHHTH
T ss_pred HHHHHHHH
Confidence 55444443
No 115
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=95.86 E-value=0.0035 Score=55.44 Aligned_cols=45 Identities=27% Similarity=0.721 Sum_probs=39.4
Q ss_pred ccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcc
Q 004925 467 QVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 513 (723)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (723)
..|.+|.+...+|+.++|||.||..|+...... ...||.|+.++.
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR--KIECPICRKDIK 98 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT--CSBCTTTCCBCC
T ss_pred CCCcccCcccCCceECCCCCCccHHHHHHHHHc--CCcCCCCCCcCC
Confidence 469999999999999999999999999876554 467999998875
No 116
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=95.79 E-value=0.027 Score=63.17 Aligned_cols=84 Identities=21% Similarity=0.235 Sum_probs=60.1
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hhh
Q 004925 29 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAA 107 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~l 107 (723)
.+||+|++.+..+.+....+ +.+++..+||+|||+..+.-+........ ++++|++| ..+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~-~~~~~~apTGtGKT~a~l~p~l~~~~~~~------------------~kvli~t~T~~l 63 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKS-YGVALESPTGSGKTIMALKSALQYSSERK------------------LKVLYLVRTNSQ 63 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHS-SEEEEECCTTSCHHHHHHHHHHHHHHHHT------------------CEEEEEESSHHH
T ss_pred CCCHHHHHHHHHHHHHHHcC-CCEEEECCCCCCHHHHHHHHHHHhhhhcC------------------CeEEEECCCHHH
Confidence 57999999998777666555 78899999999999987654433322111 58899999 568
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeC
Q 004925 108 VTQWVSEINRFTSVGSTKVLIYHG 131 (723)
Q Consensus 108 ~~qW~~ei~~~~~~~~~~~~~~~g 131 (723)
..|+.+++.+......+++..+.|
T Consensus 64 ~~Qi~~el~~l~~~~~~~~~~l~g 87 (620)
T 4a15_A 64 EEQVIKELRSLSSTMKIRAIPMQG 87 (620)
T ss_dssp HHHHHHHHHHHHHHSCCCEEECCC
T ss_pred HHHHHHHHHHHhhccCeEEEEEEC
Confidence 899999988875433456666555
No 117
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=95.78 E-value=0.0041 Score=53.87 Aligned_cols=48 Identities=35% Similarity=0.663 Sum_probs=41.4
Q ss_pred cccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCccc
Q 004925 466 QQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 514 (723)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (723)
...|.+|.+...+|+.++|||.||..|+..... .....||.|+..+..
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHNVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCcEEeeCCCcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 457999999999999999999999999988776 345689999998863
No 118
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.75 E-value=0.011 Score=43.06 Aligned_cols=45 Identities=36% Similarity=0.909 Sum_probs=37.6
Q ss_pred cccccccccccCCCCCcccccCCccchhhhhhhhcC-cCCCCCCCC
Q 004925 464 HVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSAS-KFVAKCPTC 508 (723)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 508 (723)
.....|.+|.+...+|+.++|+|.||..|+...... .....||.|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345679999999999999999999999999887654 356778876
No 119
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=95.74 E-value=0.0054 Score=48.10 Aligned_cols=49 Identities=18% Similarity=0.327 Sum_probs=42.5
Q ss_pred ccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCccc
Q 004925 465 VQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 514 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (723)
....|.+|.+...+|+.++|||.||..|+...... +...||.|+.++..
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~-~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDA-GHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTT-TCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccCCEEcCCCCeecHHHHHHHHHH-CcCCCCCCcCCCCh
Confidence 35679999999999999999999999999888753 47889999988763
No 120
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.68 E-value=0.03 Score=58.50 Aligned_cols=71 Identities=14% Similarity=0.092 Sum_probs=45.3
Q ss_pred CccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEech
Q 004925 26 LITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV 105 (723)
Q Consensus 26 ~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~ 105 (723)
....|.|||+..+..+... +-.++.-.-+.|||..+.+++.+...... ...++++.|.
T Consensus 160 ~p~~L~p~Qk~il~~l~~~-----R~~vi~~sRq~GKT~l~a~~~l~~a~~~~-----------------g~~v~~vA~t 217 (385)
T 2o0j_A 160 IKVQLRDYQRDMLKIMSSK-----RMTVCNLSRQLGKTTVVAIFLAHFVCFNK-----------------DKAVGILAHK 217 (385)
T ss_dssp EECCCCHHHHHHHHHHHHS-----SEEEEEECSSSCHHHHHHHHHHHHHHSSS-----------------SCEEEEEESS
T ss_pred CCCCCCHHHHHHHHhhccC-----cEEEEEEcCcCChhHHHHHHHHHHHHhCC-----------------CCeEEEEeCC
Confidence 3458999999988876422 44678888999999987666554222211 1468888885
Q ss_pred h-hHHHHHHHHHhh
Q 004925 106 A-AVTQWVSEINRF 118 (723)
Q Consensus 106 ~-l~~qW~~ei~~~ 118 (723)
. ....+.+.+..+
T Consensus 218 ~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 218 GSMSAEVLDRTKQA 231 (385)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 3 333333555544
No 121
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.64 E-value=0.012 Score=43.93 Aligned_cols=45 Identities=33% Similarity=0.883 Sum_probs=37.9
Q ss_pred cccccccccccCCCCCcccccCCccchhhhhhhhcC-cCCCCCCCC
Q 004925 464 HVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSAS-KFVAKCPTC 508 (723)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 508 (723)
.....|.+|.+...+|+.++|||.||..|+...... .....||.|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345679999999999999999999999999888763 346678876
No 122
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.63 E-value=0.0085 Score=50.75 Aligned_cols=49 Identities=35% Similarity=0.783 Sum_probs=42.3
Q ss_pred cccccccccCCCCCcccccCCccchhhhhhhhcCc-CCCCCCCCCCCccc
Q 004925 466 QQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASK-FVAKCPTCSIPLTV 514 (723)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 514 (723)
...|.+|.....+|+.++|||.||..|+....... ....||.|+..+..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 45799999999999999999999999998887754 45789999988764
No 123
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=95.62 E-value=0.015 Score=47.98 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=42.2
Q ss_pred ccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCccc
Q 004925 465 VQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 514 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (723)
....|++|.....+|++++|||.||..|+...... ...||.|+.++..
T Consensus 28 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN--SPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS--CSBCSSSCCBCCT
T ss_pred HhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc--CCCCCCCCCCCCh
Confidence 45789999999999999999999999999888774 5789999988763
No 124
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=95.54 E-value=0.0061 Score=54.66 Aligned_cols=49 Identities=37% Similarity=0.727 Sum_probs=42.4
Q ss_pred cccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcccc
Q 004925 466 QQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 515 (723)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (723)
...|.+|.+...+|+.++|||.||..|+...... ....||.|+..+...
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKA-QVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCCEEcCCCCchhHHHHHHHHHh-CCCcCCCCCccCCCC
Confidence 4579999999999999999999999999888764 445899999998744
No 125
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.46 E-value=0.023 Score=48.44 Aligned_cols=45 Identities=31% Similarity=0.813 Sum_probs=39.7
Q ss_pred ccccccccccCCCCCccc-ccCCccchhhhhhhhcCcCCCCCCCCCCCcc
Q 004925 465 VQQVCGLCNDLADDPVVT-NCGHAFCKACLFDSSASKFVAKCPTCSIPLT 513 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (723)
....|.+|.+...+|+.+ +|||.||..|+..... ..||.|+..+.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG----TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT----TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc----CCCcCCCCcCc
Confidence 356799999999999999 9999999999987765 78999998864
No 126
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.46 E-value=0.055 Score=60.51 Aligned_cols=73 Identities=14% Similarity=0.091 Sum_probs=47.1
Q ss_pred CccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEech
Q 004925 26 LITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV 105 (723)
Q Consensus 26 ~~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~ 105 (723)
....|.|||+..+..+... +-.++.-.-|.|||..+.+++.......+ ...++++.|.
T Consensus 160 ~~~~l~p~Q~~i~~~l~~~-----r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-----------------~~~i~~va~t 217 (592)
T 3cpe_A 160 IKVQLRDYQRDMLKIMSSK-----RMTVCNLSRQLGKTTVVAIFLAHFVCFNK-----------------DKAVGILAHK 217 (592)
T ss_dssp BBCCCCHHHHHHHHHHHHC-----SEEEEEECSSSCHHHHHHHHHHHHHHTSS-----------------SCEEEEEESS
T ss_pred ccCcCCHHHHHHHHhhccc-----cEEEEEEcCccChHHHHHHHHHHHHHhCC-----------------CCeEEEEECC
Confidence 3457999999988876221 44677889999999987655544332222 1478888884
Q ss_pred -hhHHHHHHHHHhhcC
Q 004925 106 -AAVTQWVSEINRFTS 120 (723)
Q Consensus 106 -~l~~qW~~ei~~~~~ 120 (723)
.........+..++.
T Consensus 218 ~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 218 GSMSAEVLDRTKQAIE 233 (592)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 344444456666553
No 127
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.46 E-value=0.018 Score=43.60 Aligned_cols=50 Identities=24% Similarity=0.604 Sum_probs=42.0
Q ss_pred ccccccccccccccCCCCCcccccCCc-cchhhhhhhhcCcCCCCCCCCCCCccccc
Q 004925 461 DAEHVQQVCGLCNDLADDPVVTNCGHA-FCKACLFDSSASKFVAKCPTCSIPLTVDF 516 (723)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (723)
..+.....|.+|.+...++++++|+|. +|..|... ...||.|+..+....
T Consensus 10 ~~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~------~~~CP~CR~~i~~~~ 60 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY------FQQCPMCRQFVQESF 60 (68)
T ss_dssp CSCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH------CSSCTTTCCCCCCEE
T ss_pred ccCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc------CCCCCCCCcchhceE
Confidence 344456789999999999999999999 99999973 478999999987543
No 128
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.34 E-value=0.034 Score=51.80 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=23.3
Q ss_pred eeEEEEeeccccccCCCcHHHHHHHhh-hcCceEEEeCc
Q 004925 243 KWERIILDEAHFIKDRRSNTAKAVLAL-ESSYKWALSGT 280 (723)
Q Consensus 243 ~~~~vIiDEaH~~kn~~s~~~~~l~~l-~~~~~l~LTaT 280 (723)
.+++|||||+|.+... ....+..+ .....+++||.
T Consensus 76 ~~dvviIDE~Q~~~~~---~~~~l~~l~~~~~~Vi~~Gl 111 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPS---LFEVVKDLLDRGIDVFCAGL 111 (184)
T ss_dssp TEEEEEECCGGGSCTT---HHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEECcccCCHH---HHHHHHHHHHCCCCEEEEee
Confidence 4689999999998432 44455544 33566777766
No 129
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=95.26 E-value=0.018 Score=47.45 Aligned_cols=48 Identities=25% Similarity=0.717 Sum_probs=40.9
Q ss_pred ccccccccccCCCCCccc-ccCCccchhhhhhhhcCcCCCCCCCCCCCccc
Q 004925 465 VQQVCGLCNDLADDPVVT-NCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 514 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (723)
....|.+|.+...+|+.+ +|||.||..|+...... ...||.|+..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY--KTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC--CCCCCCCCCcCCh
Confidence 346799999999999887 99999999999887764 4789999988763
No 130
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=95.26 E-value=0.011 Score=54.14 Aligned_cols=48 Identities=31% Similarity=0.762 Sum_probs=41.1
Q ss_pred ccccccccccCCCCCccc-ccCCccchhhhhhhhcCcCCCCCCCCCCCcc
Q 004925 465 VQQVCGLCNDLADDPVVT-NCGHAFCKACLFDSSASKFVAKCPTCSIPLT 513 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (723)
....|.+|.+...+|+.+ +|||.||..|+...... ....||.|+..+.
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRS-GNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHT-TCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHh-CcCCCCCCCCcCC
Confidence 345799999999999887 99999999999888764 3678999998875
No 131
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=95.21 E-value=0.009 Score=50.90 Aligned_cols=48 Identities=27% Similarity=0.752 Sum_probs=41.3
Q ss_pred ccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcc
Q 004925 465 VQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 513 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (723)
....|.+|.....+|+.++|||.||..|+...... ....||.|+..+.
T Consensus 14 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEK-ASLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCT-TTSBCTTTCCBCH
T ss_pred CCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhH-CcCCCCCCCcccC
Confidence 45679999999999999999999999999876653 3578999999876
No 132
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=95.10 E-value=0.041 Score=42.92 Aligned_cols=53 Identities=25% Similarity=0.520 Sum_probs=40.5
Q ss_pred cccccccccccCCC--CCcccc--cCCccchhhhhhhhcCcCCCCCCCCCCCcccccc
Q 004925 464 HVQQVCGLCNDLAD--DPVVTN--CGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFT 517 (723)
Q Consensus 464 ~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (723)
.....|++|.+... ++.+++ |||.||..|+...... ....||.|+.++.....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-ENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-SCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-CCCCCCCCCCccCCCch
Confidence 34567999998764 345555 9999999999877644 57899999999886533
No 133
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.04 E-value=0.033 Score=52.68 Aligned_cols=35 Identities=23% Similarity=0.457 Sum_probs=23.8
Q ss_pred eeEEEEeeccccccCCCcHHHHHHHhh-hcCceEEEeCc
Q 004925 243 KWERIILDEAHFIKDRRSNTAKAVLAL-ESSYKWALSGT 280 (723)
Q Consensus 243 ~~~~vIiDEaH~~kn~~s~~~~~l~~l-~~~~~l~LTaT 280 (723)
.+++|+|||++.+... ....+..+ .....++++|=
T Consensus 101 ~~dvViIDEaQF~~~~---~V~~l~~l~~~~~~Vi~~Gl 136 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGD---IVEVVQVLANRGYRVIVAGL 136 (214)
T ss_dssp SCCEEEECCGGGSCTT---HHHHHHHHHHTTCEEEEEEC
T ss_pred CCCEEEEECcccCCHH---HHHHHHHHhhCCCEEEEEec
Confidence 3799999999998543 33556654 34556777764
No 134
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=95.04 E-value=0.01 Score=49.92 Aligned_cols=48 Identities=27% Similarity=0.706 Sum_probs=41.6
Q ss_pred ccccccccccCCCCCccc-ccCCccchhhhhhhhcCcCCCCCCCCCCCccc
Q 004925 465 VQQVCGLCNDLADDPVVT-NCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 514 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (723)
....|.+|.+...+|+.+ +|||.||..|+....... ..||.|+..+..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS--KYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC--SBCTTTCCBSCS
T ss_pred CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC--CcCcCCCccccc
Confidence 456799999999999987 999999999998887654 889999988763
No 135
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=94.99 E-value=0.038 Score=43.09 Aligned_cols=52 Identities=21% Similarity=0.403 Sum_probs=41.1
Q ss_pred ccccccccccccCCCCC---cccccCCccchhhhhhhhcCcCCCCCCCCCCCccccc
Q 004925 463 EHVQQVCGLCNDLADDP---VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDF 516 (723)
Q Consensus 463 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (723)
......|.+|.+....+ ..+.|+|.||..|+..-.... ..||.|+..+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH--DSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT--CSCTTTCCCCCCSC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC--CcCcCcCCccCCcc
Confidence 44567899999877655 457999999999998877543 68999999987543
No 136
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.93 E-value=0.0078 Score=45.81 Aligned_cols=48 Identities=38% Similarity=0.792 Sum_probs=40.0
Q ss_pred cccccccccccCCCCC-------cccccCCccchhhhhhhhcCcCCCCCCCCCCCcc
Q 004925 464 HVQQVCGLCNDLADDP-------VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 513 (723)
Q Consensus 464 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (723)
.....|.+|.+...++ +.+.|+|.||..|+..-... ...||.|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--CCCCCCCCCccC
Confidence 4567799999877766 78999999999999887665 568999998875
No 137
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=94.75 E-value=0.028 Score=42.50 Aligned_cols=48 Identities=27% Similarity=0.691 Sum_probs=39.8
Q ss_pred ccccccccccCCCCC-cccccCCccchhhhhhhhcCcCCCCCCCCCCCccc
Q 004925 465 VQQVCGLCNDLADDP-VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 514 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (723)
....|.+|.+...++ ..++|+|.||..|+..-... ...||.|+..+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ--NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH--SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC--cCcCcCCChhhHh
Confidence 356799999988886 78999999999999876543 3689999998874
No 138
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=94.72 E-value=0.016 Score=44.81 Aligned_cols=44 Identities=34% Similarity=0.761 Sum_probs=38.6
Q ss_pred cccccccccCCCCCcccccCCc-cchhhhhhhhcCcCCCCCCCCCCCcccc
Q 004925 466 QQVCGLCNDLADDPVVTNCGHA-FCKACLFDSSASKFVAKCPTCSIPLTVD 515 (723)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (723)
...|.+|.+...++++++|||. +|..|+... ..||.|+..+...
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV------DKCPMCYTVITFK 68 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC------SBCTTTCCBCSEE
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC------ccCCCcCcCccCc
Confidence 4579999999999999999999 999999755 8899999987643
No 139
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.71 E-value=0.013 Score=43.98 Aligned_cols=49 Identities=31% Similarity=0.720 Sum_probs=38.6
Q ss_pred ccccccccc-CCCCC----cccccCCccchhhhhhhhcCcCCCCCCCCCCCcccc
Q 004925 466 QQVCGLCND-LADDP----VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 515 (723)
Q Consensus 466 ~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (723)
...|.+|.+ ...++ ++++|||.||.+|+...... ....||.|+..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-GAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT-TSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc-CCCcCCCCCCccccc
Confidence 456899998 66666 46899999999999887543 467899999988643
No 140
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=94.69 E-value=0.027 Score=46.25 Aligned_cols=48 Identities=21% Similarity=0.157 Sum_probs=42.2
Q ss_pred ccccccccccCCCCCcccccC-CccchhhhhhhhcCcCCCCCCCCCCCccc
Q 004925 465 VQQVCGLCNDLADDPVVTNCG-HAFCKACLFDSSASKFVAKCPTCSIPLTV 514 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (723)
....|++|.++..+|+++.|| |.||..|+...... ...||.|+.++..
T Consensus 21 ~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~--~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS--DQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT--SCBCTTTCSBCCT
T ss_pred HhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh--CCCCCCCCCCCCh
Confidence 457899999999999999999 99999999888775 5689999988763
No 141
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.69 E-value=0.024 Score=43.95 Aligned_cols=44 Identities=36% Similarity=0.794 Sum_probs=38.1
Q ss_pred cccccccccCCCCCcccccCCc-cchhhhhhhhcCcCCCCCCCCCCCcccc
Q 004925 466 QQVCGLCNDLADDPVVTNCGHA-FCKACLFDSSASKFVAKCPTCSIPLTVD 515 (723)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (723)
...|.+|.+...++++++|||. +|..|+.. ...||.|+.++...
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~------~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEA------VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH------CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhC------CCCCccCCceecCc
Confidence 4579999999999999999999 99999953 37899999988743
No 142
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=94.67 E-value=0.015 Score=46.45 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=42.0
Q ss_pred ccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCccc
Q 004925 465 VQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 514 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (723)
....|++|.+...+|+++.|||.||..|+...... ...||.|+.++..
T Consensus 13 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN--SPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred hheECcccCchhcCCeECCCCCEECHHHHHHHHhc--CCCCCCCcCCCCh
Confidence 45789999999999999999999999999888774 5789999888763
No 143
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=94.59 E-value=0.035 Score=39.87 Aligned_cols=47 Identities=26% Similarity=0.570 Sum_probs=37.0
Q ss_pred ccccccccccCCCC---Ccccc-cCCccchhhhhhhhcCcCCCCCCCCCCCcc
Q 004925 465 VQQVCGLCNDLADD---PVVTN-CGHAFCKACLFDSSASKFVAKCPTCSIPLT 513 (723)
Q Consensus 465 ~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (723)
....|.+|.+.... +..+. |+|.||.+|+..-... ...||.|+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 34578999877665 56665 9999999999877654 568999998865
No 144
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=94.48 E-value=0.026 Score=42.90 Aligned_cols=53 Identities=23% Similarity=0.601 Sum_probs=40.5
Q ss_pred cccccccccccccCCC---CCcccccCCccchhhhhhhhcCcCCCCCCCCCCCccccc
Q 004925 462 AEHVQQVCGLCNDLAD---DPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDF 516 (723)
Q Consensus 462 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (723)
.......|.+|.+... .+..++|+|.||..|+..-.... ..||.|+..+...+
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN--KKCPICRVDIEAQL 65 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC--SBCTTTCSBSCSCC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC--CCCcCcCccccCcC
Confidence 3445678999987653 45789999999999998776553 46999999887553
No 145
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=94.46 E-value=0.018 Score=42.97 Aligned_cols=50 Identities=24% Similarity=0.574 Sum_probs=41.3
Q ss_pred ccccccccccccCCCCCccc--ccCCc-cchhhhhhhhcCcCCCCCCCCCCCccc
Q 004925 463 EHVQQVCGLCNDLADDPVVT--NCGHA-FCKACLFDSSASKFVAKCPTCSIPLTV 514 (723)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (723)
......|.+|.+...+++++ +|||. +|.+|....... ...||.|+.++..
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i~~ 56 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA--GASCPICKKEIQL 56 (63)
T ss_dssp GGGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT--TCBCTTTCCBCCE
T ss_pred CCcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh--CCcCCCcCchhhc
Confidence 44567899999999888877 99998 999999876654 4789999998863
No 146
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=94.40 E-value=0.016 Score=53.04 Aligned_cols=49 Identities=16% Similarity=0.128 Sum_probs=42.0
Q ss_pred ccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCccc
Q 004925 465 VQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 514 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (723)
....|++|..+..+|++++|||.||..|+..-....+. .||.|+.++..
T Consensus 105 ~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~-tcP~t~~~l~~ 153 (179)
T 2f42_A 105 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGH-FDPVTRSPLTQ 153 (179)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCS-BCTTTCCBCCG
T ss_pred HhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCC-CCCCCcCCCCh
Confidence 45679999999999999999999999999888765433 69999988764
No 147
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=94.34 E-value=0.023 Score=40.85 Aligned_cols=46 Identities=26% Similarity=0.602 Sum_probs=37.6
Q ss_pred cccccccccCCCC----CcccccCCccchhhhhhhhcCcCCCCCCCCCCCcc
Q 004925 466 QQVCGLCNDLADD----PVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 513 (723)
Q Consensus 466 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (723)
...|.+|.+...+ +..++|+|.||.+|+..-.... ..||.|+..+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 4578999877644 6789999999999998877665 88999998764
No 148
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=94.32 E-value=0.016 Score=58.07 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=41.2
Q ss_pred ccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCccc
Q 004925 465 VQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 514 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (723)
....|++|.....+|++++|||.||..|+..-...... .||.|+.++..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~-~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGH-FNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCS-SCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCC-CCcCCCCCCch
Confidence 45679999999999999999999999999877765332 39999988763
No 149
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=94.18 E-value=0.019 Score=59.18 Aligned_cols=49 Identities=29% Similarity=0.662 Sum_probs=41.8
Q ss_pred cccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcccc
Q 004925 466 QQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 515 (723)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (723)
...|.+|.+...+++.++|||.+|..|+..-... ....||.|+.++...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES-EGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHH-TCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhc-CCCCCCCCCCccCCc
Confidence 3689999999999999999999999999765542 567899999998754
No 150
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=94.15 E-value=0.043 Score=52.95 Aligned_cols=51 Identities=18% Similarity=0.494 Sum_probs=43.9
Q ss_pred ccccccccccccCCCCCccc-ccCCccchhhhhhhhcCcCCCCCCC--CCCCcc
Q 004925 463 EHVQQVCGLCNDLADDPVVT-NCGHAFCKACLFDSSASKFVAKCPT--CSIPLT 513 (723)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 513 (723)
......|++|.....+|+.. .|||.||..|+.......+...||. |+..+.
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 44667799999999999985 9999999999998887666778999 988765
No 151
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.07 E-value=0.056 Score=50.54 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=25.3
Q ss_pred cccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEech
Q 004925 53 ILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV 105 (723)
Q Consensus 53 iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~ 105 (723)
++.-+||+|||..++.++..+...+ .+++|+.|.
T Consensus 12 v~~G~mgsGKTT~ll~~a~r~~~~g-------------------~kV~v~k~~ 45 (191)
T 1xx6_A 12 VIVGPMYSGKSEELIRRIRRAKIAK-------------------QKIQVFKPE 45 (191)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTT-------------------CCEEEEEEC
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCC-------------------CEEEEEEec
Confidence 5577899999998888777654322 578888876
No 152
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.00 E-value=0.039 Score=52.92 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=23.7
Q ss_pred eeEEEEeeccccccCCCcHHHHHHHhh-hcCceEEEeCc
Q 004925 243 KWERIILDEAHFIKDRRSNTAKAVLAL-ESSYKWALSGT 280 (723)
Q Consensus 243 ~~~~vIiDEaH~~kn~~s~~~~~l~~l-~~~~~l~LTaT 280 (723)
.+++|||||+|.+... ....+..+ .....++++|-
T Consensus 89 ~~dvViIDEaQ~l~~~---~ve~l~~L~~~gi~Vil~Gl 124 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDR---ICEVANILAENGFVVIISGL 124 (223)
T ss_dssp TCCEEEECSGGGSCTH---HHHHHHHHHHTTCEEEEECC
T ss_pred CCCEEEEecCccCcHH---HHHHHHHHHhCCCeEEEEec
Confidence 4699999999987543 44445544 23566888885
No 153
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.89 E-value=0.11 Score=54.90 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=32.7
Q ss_pred CCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hhhHHHHHHHHHh
Q 004925 51 GGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAAVTQWVSEINR 117 (723)
Q Consensus 51 g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~l~~qW~~ei~~ 117 (723)
-.++....|+|||.....++.. ++.+|++| ..+...|.+.+.+
T Consensus 163 v~~I~G~aGsGKTt~I~~~~~~------------------------~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRVNF------------------------EEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHCCT------------------------TTCEEEESCHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHhcc------------------------CCeEEEeCCHHHHHHHHHHhhh
Confidence 3467889999999877665521 36699999 5688999988854
No 154
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=93.87 E-value=0.039 Score=46.75 Aligned_cols=50 Identities=24% Similarity=0.529 Sum_probs=39.6
Q ss_pred cccccccccCCCCCc------------------ccccCCccchhhhhhhhcC---cCCCCCCCCCCCcccc
Q 004925 466 QQVCGLCNDLADDPV------------------VTNCGHAFCKACLFDSSAS---KFVAKCPTCSIPLTVD 515 (723)
Q Consensus 466 ~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 515 (723)
...|.+|.+....+. +++|+|.||..|+..-... .....||.|+..+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 357999987776543 7899999999999877643 4577999999988754
No 155
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=93.86 E-value=0.023 Score=48.56 Aligned_cols=49 Identities=35% Similarity=0.624 Sum_probs=41.2
Q ss_pred ccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCccc
Q 004925 465 VQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 514 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (723)
....|.+|.....+|+.++|||.||..|+........ ..||.|+..+..
T Consensus 17 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG-HKCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC-SBCTTTCCBCCG
T ss_pred CCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCC-CCCCCCCCCcCH
Confidence 4467999999999999999999999999987765443 389999988763
No 156
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=93.64 E-value=0.014 Score=43.60 Aligned_cols=48 Identities=38% Similarity=0.799 Sum_probs=38.7
Q ss_pred cccccccccCCCCC-------cccccCCccchhhhhhhhcCcCCCCCCCCCCCcccc
Q 004925 466 QQVCGLCNDLADDP-------VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 515 (723)
Q Consensus 466 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (723)
...|.+|.+...++ +.++|+|.||.+|+..-... ...||.|+..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHK 57 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--CSBCTTTCCBCTTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--CCCCCCCCccCCcc
Confidence 34688888776665 78999999999999887665 56999999987743
No 157
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=93.60 E-value=0.028 Score=47.85 Aligned_cols=49 Identities=31% Similarity=0.789 Sum_probs=41.9
Q ss_pred ccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCccc
Q 004925 465 VQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 514 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (723)
....|.+|.+...+|+.++|||.||..|+....... ...||.|+..+..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVM-GSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHC-cCcCCCCCCCCCH
Confidence 356799999999999999999999999998776653 4579999998764
No 158
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=93.53 E-value=0.015 Score=44.43 Aligned_cols=49 Identities=37% Similarity=0.764 Sum_probs=40.2
Q ss_pred ccccccccccCCCCC-------cccccCCccchhhhhhhhcCcCCCCCCCCCCCcccc
Q 004925 465 VQQVCGLCNDLADDP-------VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 515 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (723)
....|.+|.+...++ +.++|+|.||.+|+..-.... ..||.|+..+...
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTCRKKINHK 64 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--SBCTTTCCBCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--CCCCCCCCccChh
Confidence 456799999887766 899999999999998776543 5899999988743
No 159
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=93.28 E-value=0.043 Score=42.98 Aligned_cols=44 Identities=23% Similarity=0.655 Sum_probs=38.4
Q ss_pred cccccccccCCCCCcccccCCc-cchhhhhhhhcCcCCCCCCCCCCCcccc
Q 004925 466 QQVCGLCNDLADDPVVTNCGHA-FCKACLFDSSASKFVAKCPTCSIPLTVD 515 (723)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (723)
...|.+|.+...++++++|||. +|..|.... ..||.|+..+...
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL------QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC------SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc------CcCCCCCchhhCe
Confidence 3579999999999999999999 999999754 3999999998854
No 160
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=93.18 E-value=0.048 Score=40.71 Aligned_cols=48 Identities=21% Similarity=0.564 Sum_probs=40.2
Q ss_pred ccccccccccCCCCCccc--ccCCc-cchhhhhhhhcCcCCCCCCCCCCCccc
Q 004925 465 VQQVCGLCNDLADDPVVT--NCGHA-FCKACLFDSSASKFVAKCPTCSIPLTV 514 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (723)
....|.+|.+...+++++ +|||. +|.+|...... ....||.|+.++..
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~--~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKK--RNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHH--TTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHH--cCCcCCCcCcchhc
Confidence 345799999999999987 99999 89999987765 35689999998863
No 161
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.07 E-value=0.085 Score=40.56 Aligned_cols=49 Identities=24% Similarity=0.656 Sum_probs=38.7
Q ss_pred cccccccccccCCCCCcc---cccCCccchhhhhhhhcCcCCCCCCCCCCCccc
Q 004925 464 HVQQVCGLCNDLADDPVV---TNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 514 (723)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (723)
.....|.+|.+....+.. ++|+|.||..|+..-.... ..||.|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~--~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR--KVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC--SBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC--CcCCCcCccccc
Confidence 345689999988776654 4999999999998876543 489999998764
No 162
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.02 E-value=0.14 Score=48.83 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=22.4
Q ss_pred eeEEEEeeccccccCCCcHHHHHHHhh-hcCceEEEeC
Q 004925 243 KWERIILDEAHFIKDRRSNTAKAVLAL-ESSYKWALSG 279 (723)
Q Consensus 243 ~~~~vIiDEaH~~kn~~s~~~~~l~~l-~~~~~l~LTa 279 (723)
.++.|+|||++.+.. ....+..+ .....+++||
T Consensus 90 ~~dvViIDEaQF~~~----v~el~~~l~~~gi~VI~~G 123 (234)
T 2orv_A 90 GVAVIGIDEGQFFPD----IVEFCEAMANAGKTVIVAA 123 (234)
T ss_dssp TCSEEEESSGGGCTT----HHHHHHHHHHTTCEEEEEC
T ss_pred cCCEEEEEchhhhhh----HHHHHHHHHhCCCEEEEEe
Confidence 368999999999953 44444444 2445677776
No 163
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.81 E-value=0.049 Score=44.31 Aligned_cols=47 Identities=26% Similarity=0.552 Sum_probs=39.2
Q ss_pred ccccccccccCCCCCcccc-cCCccchhhhhhhhcCc----CCCCCCC--CCCC
Q 004925 465 VQQVCGLCNDLADDPVVTN-CGHAFCKACLFDSSASK----FVAKCPT--CSIP 511 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~ 511 (723)
....|++|.....+|+.+. |||.||..|+....... ....||. |...
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3467999999999999995 99999999998887653 3678998 7655
No 164
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=92.79 E-value=0.052 Score=43.83 Aligned_cols=49 Identities=20% Similarity=0.413 Sum_probs=38.7
Q ss_pred cccccccccccCCCC---CcccccCCccchhhhhhhhcCcCCCCCCCCCCCccc
Q 004925 464 HVQQVCGLCNDLADD---PVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 514 (723)
Q Consensus 464 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (723)
.....|.+|.+.... +..++|+|.||..|+..-... ...||.|+..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK--SGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT--TCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc--CCcCcCcCccCCC
Confidence 345679999876655 667899999999999887654 4589999988753
No 165
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.70 E-value=0.037 Score=42.15 Aligned_cols=48 Identities=29% Similarity=0.720 Sum_probs=40.5
Q ss_pred ccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcccc
Q 004925 465 VQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 515 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (723)
....|.+|.+...+ +.++|+|.||..|+..-.. ....||.|+..+...
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD--RHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC--CCSSCHHHHHCTTCC
T ss_pred CCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH--CcCcCCCcCCcccCC
Confidence 45689999998888 9999999999999987655 578899998887643
No 166
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=92.63 E-value=0.81 Score=50.49 Aligned_cols=90 Identities=7% Similarity=-0.018 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEe-cCCC
Q 004925 554 IEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMS-LKAG 632 (723)
Q Consensus 554 l~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s-~~~~ 632 (723)
...+.+.|..+....++ .++||......++.+.. ..+.++..=..+++ +..+++.|..+++ -|+++. ....
T Consensus 378 ~~~l~~~i~~l~~~~~g-~~lvlF~Sy~~l~~v~~---~~~~~v~~q~~~~~---~~~~~~~~~~~~~-~vl~~v~gg~~ 449 (551)
T 3crv_A 378 WKRYADYLLKIYFQAKA-NVLVVFPSYEIMDRVMS---RISLPKYVESEDSS---VEDLYSAISANNK-VLIGSVGKGKL 449 (551)
T ss_dssp HHHHHHHHHHHHHHCSS-EEEEEESCHHHHHHHHT---TCCSSEEECCSSCC---HHHHHHHTTSSSS-CEEEEESSCCS
T ss_pred HHHHHHHHHHHHHhCCC-CEEEEecCHHHHHHHHH---hcCCcEEEcCCCCC---HHHHHHHHHhcCC-eEEEEEeccee
Confidence 56777777777655555 67777766666666654 33444433222333 4568888864333 444443 2699
Q ss_pred ccccccc-----ccCEEEEECCCC
Q 004925 633 GVALNLT-----VASHVFLMDPWW 651 (723)
Q Consensus 633 ~eGlnL~-----~a~~vI~~d~~w 651 (723)
+||||++ .++.||+.-.|+
T Consensus 450 ~EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 450 AEGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp CCSSCCEETTEESEEEEEEESCCC
T ss_pred cccccccccCCcceeEEEEEcCCC
Confidence 9999999 477888876654
No 167
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.50 E-value=0.53 Score=47.93 Aligned_cols=25 Identities=20% Similarity=0.041 Sum_probs=20.1
Q ss_pred CCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 49 IRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 49 ~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
..+.+|..++|+|||..+-+++...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 3678899999999999887766554
No 168
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.30 E-value=0.56 Score=47.27 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=20.1
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~ 74 (723)
.+.+|.-++|+|||..|-+++....
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999977766543
No 169
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.24 E-value=0.054 Score=41.85 Aligned_cols=48 Identities=23% Similarity=0.442 Sum_probs=39.1
Q ss_pred cccccccccccCCCCC---cccccCCccchhhhhhhhcCcCCCCCCCCCCCcc
Q 004925 464 HVQQVCGLCNDLADDP---VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 513 (723)
Q Consensus 464 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (723)
.....|.+|.+....+ ..++|+|.||..|+..-... ...||.|+..+.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~--~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA--NRTCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH--CSSCTTTCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc--CCcCcCcCCcCC
Confidence 4556799999877766 67899999999999877654 358999998875
No 170
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=91.66 E-value=0.082 Score=54.12 Aligned_cols=45 Identities=29% Similarity=0.660 Sum_probs=39.5
Q ss_pred ccccccccccCCCCCcccccCCc-cchhhhhhhhcCcCCCCCCCCCCCcccc
Q 004925 465 VQQVCGLCNDLADDPVVTNCGHA-FCKACLFDSSASKFVAKCPTCSIPLTVD 515 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (723)
....|.+|.+...+++.++|||. +|..|+... ..||.|+..+...
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~------~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL------RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC------SBCTTTCCBCCEE
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC------CcCCCCCCCccCe
Confidence 45679999999999999999999 999999754 7899999998743
No 171
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.58 E-value=0.6 Score=47.51 Aligned_cols=54 Identities=15% Similarity=0.168 Sum_probs=31.9
Q ss_pred eeEEEEeecccccc-CC-CcHHHHHHHhhhcCceEEEeCcCCCCchhhHHHHHHHh
Q 004925 243 KWERIILDEAHFIK-DR-RSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFL 296 (723)
Q Consensus 243 ~~~~vIiDEaH~~k-n~-~s~~~~~l~~l~~~~~l~LTaTP~~n~~~dl~~~l~lL 296 (723)
...+|||||+|.+. .. .....+.+.......++++|+++...-...+.+-+..+
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i 160 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVI 160 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEE
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEE
Confidence 46889999999985 22 12222333333456678887777654445555544433
No 172
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=91.36 E-value=0.21 Score=47.06 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=15.9
Q ss_pred cccCCCCCcHHHHHHHHHhcC
Q 004925 53 ILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 53 iLad~~GlGKT~~al~~i~~~ 73 (723)
++.-+||+|||...+..+..+
T Consensus 32 vitG~M~sGKTT~Llr~~~r~ 52 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRG 52 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 567789999998777666443
No 173
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=90.88 E-value=0.26 Score=45.75 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=20.5
Q ss_pred eEEEEeeccccccCCCcHHHHHHHhh-hcCceEEEeC
Q 004925 244 WERIILDEAHFIKDRRSNTAKAVLAL-ESSYKWALSG 279 (723)
Q Consensus 244 ~~~vIiDEaH~~kn~~s~~~~~l~~l-~~~~~l~LTa 279 (723)
.+.|+|||+|.+ .. ....+..+ .....++++|
T Consensus 92 ~DvIlIDEaQFf-k~---~ve~~~~L~~~gk~VI~~G 124 (195)
T 1w4r_A 92 VAVIGIDEGQFF-PD---IVEFCEAMANAGKTVIVAA 124 (195)
T ss_dssp CSEEEESSGGGC-TT---HHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEchhhh-HH---HHHHHHHHHHCCCeEEEEe
Confidence 589999999999 32 44444444 3444555555
No 174
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=90.73 E-value=0.037 Score=48.88 Aligned_cols=49 Identities=22% Similarity=0.626 Sum_probs=41.1
Q ss_pred cccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCcc
Q 004925 464 HVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 513 (723)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (723)
.....|.+|.....+|+.+.|||.||..|+..... .....||.|+.++.
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~-~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILS-SGPQNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGG-GSCEECHHHHHTTC
T ss_pred CcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHh-cCCCCCCCCCCccc
Confidence 34567999999999999999999999999988764 34568999988754
No 175
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.28 E-value=0.26 Score=50.25 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=19.6
Q ss_pred CCCcccCCCCCcHHHHHHHHHhc
Q 004925 50 RGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~ 72 (723)
+|.+|.-++|+|||..|-+++..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 57899999999999998777654
No 176
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=89.74 E-value=1.3 Score=47.24 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=20.2
Q ss_pred CCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 49 IRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 49 ~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
..+.+|..++|+|||..+-++....
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3678899999999999887666544
No 177
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=89.50 E-value=0.9 Score=42.74 Aligned_cols=41 Identities=24% Similarity=0.172 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 31 LRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 31 ~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
+......+...+... ..++.+|..+.|+|||..+-.++...
T Consensus 22 ~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 22 QDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CHHHHHHHHHHHHTT--CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344445454444432 22457889999999999887766543
No 178
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=89.50 E-value=0.13 Score=47.15 Aligned_cols=49 Identities=35% Similarity=0.624 Sum_probs=41.2
Q ss_pred ccccccccccCCCCCcccccCCccchhhhhhhhcCcCCCCCCCCCCCccc
Q 004925 465 VQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 514 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (723)
....|.+|.+...+|+.++|||.||..|+........ ..||.|+..+..
T Consensus 17 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG-HKCPVDNEILLE 65 (170)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC-SBCTTTCCBCCG
T ss_pred CCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCC-CCCCCCccCcch
Confidence 4567999999999999999999999999988765432 389999888763
No 179
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.30 E-value=0.96 Score=41.21 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=19.9
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcC
Q 004925 50 RGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
++.+|.-++|+|||..+-.++...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 567889999999999987776654
No 180
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=89.17 E-value=0.73 Score=40.57 Aligned_cols=24 Identities=21% Similarity=0.008 Sum_probs=19.9
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcC
Q 004925 50 RGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
...+|.-++|+|||..|-++....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 678999999999999987666543
No 181
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=89.11 E-value=0.11 Score=45.26 Aligned_cols=49 Identities=37% Similarity=0.764 Sum_probs=41.0
Q ss_pred ccccccccccCCCCC-------cccccCCccchhhhhhhhcCcCCCCCCCCCCCcccc
Q 004925 465 VQQVCGLCNDLADDP-------VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 515 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (723)
....|.+|.+...++ +.+.|||.||.+|+....... ..||.|+..+...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTCRKKINHK 61 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC--SBCTTTCCBCTTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC--CCCCCCCCcCccc
Confidence 356799999888777 899999999999998887654 4899999988754
No 182
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=87.98 E-value=0.42 Score=45.92 Aligned_cols=24 Identities=17% Similarity=0.001 Sum_probs=19.6
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcC
Q 004925 50 RGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
++.+|.-++|+|||..+-+++...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 677899999999999887666543
No 183
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=86.52 E-value=0.17 Score=41.03 Aligned_cols=46 Identities=26% Similarity=0.522 Sum_probs=36.4
Q ss_pred cccccccccCCCCCccc---ccCCccchhhhhhhhcCc------CCCCCCC--CCCC
Q 004925 466 QQVCGLCNDLADDPVVT---NCGHAFCKACLFDSSASK------FVAKCPT--CSIP 511 (723)
Q Consensus 466 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~~ 511 (723)
...|.+|.+....+..+ +|+|.||.+|+....... ....||. |...
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45799999887776544 799999999998887653 2468999 9877
No 184
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=86.11 E-value=0.55 Score=48.57 Aligned_cols=24 Identities=29% Similarity=0.301 Sum_probs=20.2
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcC
Q 004925 50 RGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
+|.+|.-++|+|||..|-+++...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 678999999999999997777643
No 185
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.05 E-value=0.5 Score=36.93 Aligned_cols=48 Identities=25% Similarity=0.583 Sum_probs=35.6
Q ss_pred cccccccccCCCC--------------C-cccccCCccchhhhhhhhcCcCCCCCCCCCCCcccc
Q 004925 466 QQVCGLCNDLADD--------------P-VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 515 (723)
Q Consensus 466 ~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (723)
...|.+|.+...+ + .+.+|+|.|+..|+..-.... ..||.|+.++...
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN--NRCPLCQQDWVVQ 77 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC--CBCTTTCCBCCEE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC--CCCCCcCCCcchh
Confidence 4557777766644 3 344699999999998876654 5899999987643
No 186
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=84.48 E-value=2.2 Score=42.99 Aligned_cols=41 Identities=24% Similarity=0.212 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 31 LRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 31 ~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
++.....+..++... ...+.+|..+.|+|||..+-+++...
T Consensus 30 ~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp CHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 455555555554432 22357899999999999987777643
No 187
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=84.21 E-value=1.1 Score=50.44 Aligned_cols=71 Identities=14% Similarity=0.096 Sum_probs=50.5
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEech-h
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-A 106 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~-~ 106 (723)
..|-|.|++++.. .. +..++-...|+|||.+.+..+..+...... +...+|+|++. .
T Consensus 8 ~~Ln~~Q~~av~~------~~-~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~---------------~~~~iL~ltft~~ 65 (647)
T 3lfu_A 8 DSLNDKQREAVAA------PR-SNLLVLAGAGSGKTRVLVHRIAWLMSVENC---------------SPYSIMAVTFTNK 65 (647)
T ss_dssp TTCCHHHHHHHTC------CS-SCEEEEECTTSCHHHHHHHHHHHHHHTSCC---------------CGGGEEEEESSHH
T ss_pred hcCCHHHHHHHhC------CC-CCEEEEECCCCCHHHHHHHHHHHHHHhCCC---------------ChhhEEEEeccHH
Confidence 4788999998862 11 556777889999999998877766543221 12588999985 4
Q ss_pred hHHHHHHHHHhhcC
Q 004925 107 AVTQWVSEINRFTS 120 (723)
Q Consensus 107 l~~qW~~ei~~~~~ 120 (723)
....-.+.+.+.++
T Consensus 66 aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 66 AAAEMRHRIGQLMG 79 (647)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 56777777777764
No 188
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=83.62 E-value=0.74 Score=45.76 Aligned_cols=24 Identities=33% Similarity=0.373 Sum_probs=20.1
Q ss_pred CCCCcccCCCCCcHHHHHHHHHhc
Q 004925 49 IRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 49 ~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
.++.+|..++|+|||..+-+++..
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 377899999999999998777654
No 189
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=83.37 E-value=6.3 Score=38.10 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=19.5
Q ss_pred CCCCcccCCCCCcHHHHHHHHHhc
Q 004925 49 IRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 49 ~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
.++.+|.-++|+|||..|-+++..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 366789999999999998776653
No 190
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=82.96 E-value=3.7 Score=42.49 Aligned_cols=43 Identities=14% Similarity=-0.015 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHhc--cCCCCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 31 LRYQKEWLAWALKQE--ESAIRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 31 ~p~Q~~~~~~~~~~~--~~~~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
+..++..+...+... ....++.+|.-+.|+|||..+-.++...
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 455666555444432 2222567889999999999987777654
No 191
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=82.68 E-value=0.78 Score=37.96 Aligned_cols=47 Identities=21% Similarity=0.382 Sum_probs=36.9
Q ss_pred cccccccccCCCCC------------------cccccCCccchhhhhhhhcCcCCCCCCCCCCCccc
Q 004925 466 QQVCGLCNDLADDP------------------VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 514 (723)
Q Consensus 466 ~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (723)
...|.+|....+.+ +++.|+|.|+..|+..-... ...||+|+..+..
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREWEF 101 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--CSBCSSSCSBCCE
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--CCcCcCCCCccee
Confidence 45688888766644 45899999999999887665 5789999998653
No 192
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=81.56 E-value=4.4 Score=46.38 Aligned_cols=99 Identities=8% Similarity=0.008 Sum_probs=72.1
Q ss_pred CcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHH----HhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceE
Q 004925 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSL----HKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKI 624 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L----~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~v 624 (723)
.+|+|.-...-.+...+. .+.+++|.+..+..+..+.+.+ ...|+++..++|+++..++...+....++ .+.+
T Consensus 398 TGSGKTlvall~il~~l~--~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g-~~~I 474 (780)
T 1gm5_A 398 VGSGKTVVAQLAILDNYE--AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNG-QIDV 474 (780)
T ss_dssp SSSSHHHHHHHHHHHHHH--HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSS-CCCE
T ss_pred CCCCHHHHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcC-CCCE
Confidence 567887766655555443 3468999999887655554444 44589999999999999999898888765 6778
Q ss_pred EEEecCCCcccccccccCEEEEECCC
Q 004925 625 FLMSLKAGGVALNLTVASHVFLMDPW 650 (723)
Q Consensus 625 ll~s~~~~~eGlnL~~a~~vI~~d~~ 650 (723)
+|.+.......+++...+.||+=+.+
T Consensus 475 vVgT~~ll~~~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 475 VIGTHALIQEDVHFKNLGLVIIDEQH 500 (780)
T ss_dssp EEECTTHHHHCCCCSCCCEEEEESCC
T ss_pred EEECHHHHhhhhhccCCceEEecccc
Confidence 88887766666777777777664444
No 193
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=80.23 E-value=2.9 Score=43.08 Aligned_cols=43 Identities=21% Similarity=0.078 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCc
Q 004925 31 LRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 31 ~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~ 74 (723)
+......+...+...... +..++..+.|+|||..+-.++....
T Consensus 21 ~~~~~~~L~~~l~~~~~~-~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIH-HAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CHHHHHHHHHHHHHTCCC-SEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHhCCCC-eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 455555555555432211 3358899999999999877766543
No 194
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=80.11 E-value=0.64 Score=34.05 Aligned_cols=48 Identities=19% Similarity=0.412 Sum_probs=40.3
Q ss_pred cccccccccCCCCCccc-ccCCccchhhhhhhhcCcCCCCCCCCCCCcccc
Q 004925 466 QQVCGLCNDLADDPVVT-NCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 515 (723)
Q Consensus 466 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (723)
...|+++.....+|++. .+|+.|+.+|+..-.... ..||..+.++..+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~--~~cP~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT--GNDPITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH--SBCTTTCCBCCGG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC--CCCcCCcCCCChh
Confidence 35799999999999999 999999999999988764 3499998887644
No 195
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=79.91 E-value=1.9 Score=45.00 Aligned_cols=24 Identities=38% Similarity=0.401 Sum_probs=20.1
Q ss_pred CCCCcccCCCCCcHHHHHHHHHhc
Q 004925 49 IRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 49 ~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
.++.||.-++|+|||..|-+++..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 367899999999999998777554
No 196
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=79.83 E-value=2.8 Score=45.23 Aligned_cols=26 Identities=35% Similarity=0.346 Sum_probs=20.9
Q ss_pred CCCCCCcccCCCCCcHHHHHHHHHhc
Q 004925 47 SAIRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 47 ~~~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
...++.+|.-++|+|||..|-++...
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 33477899999999999998777654
No 197
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.88 E-value=2.5 Score=32.85 Aligned_cols=55 Identities=24% Similarity=0.520 Sum_probs=43.3
Q ss_pred ccccccccccccCC--CCCcccccC-----CccchhhhhhhhcCcCCCCCCCCCCCcccccc
Q 004925 463 EHVQQVCGLCNDLA--DDPVVTNCG-----HAFCKACLFDSSASKFVAKCPTCSIPLTVDFT 517 (723)
Q Consensus 463 ~~~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (723)
......|.+|.+.. ..+++++|. |.|-.+|++.=........||.|+..+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~ 73 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETK 73 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence 34456799998544 356788896 99999999888887777899999999876543
No 198
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.10 E-value=2.1 Score=43.02 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 31 LRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 31 ~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
++.....+..++... ...+.+|..+.|+|||..+-.++...
T Consensus 26 ~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 26 NKETIDRLQQIAKDG--NMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CTHHHHHHHHHHHSC--CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 344455554444332 22447899999999999987776543
No 199
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=76.53 E-value=7.7 Score=40.56 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=70.3
Q ss_pred CcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHh---CCCeEEEeecCCCHHHHHHHHHhhcCCCCceEE
Q 004925 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK---SGVNCVQLVGSMSIPARDAAINRFTEDPDCKIF 625 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~---~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vl 625 (723)
.+++|--..+-.+.... ..+.++||.++.+..+..+.+.++. .|+++..++|+.+..++...+..+..+ .+.|+
T Consensus 45 TGsGKT~~~l~~~~~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~-~~~Ii 121 (414)
T 3oiy_A 45 TGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED-DYHIL 121 (414)
T ss_dssp SSSSHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHT-CCSEE
T ss_pred CCCCHHHHHHHHHHHHh--cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcC-CCCEE
Confidence 67788875554444442 4567999999999998888888887 588999999999998888888888764 57788
Q ss_pred EEecCCCccc---ccccccCEEEE
Q 004925 626 LMSLKAGGVA---LNLTVASHVFL 646 (723)
Q Consensus 626 l~s~~~~~eG---lnL~~a~~vI~ 646 (723)
++|......- +++...+.+|+
T Consensus 122 v~Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 122 VFSTQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp EEEHHHHHHCHHHHTTCCCSEEEE
T ss_pred EECHHHHHHHHHHhccccccEEEE
Confidence 8887665322 34456666655
No 200
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=76.46 E-value=0.58 Score=40.38 Aligned_cols=50 Identities=36% Similarity=0.751 Sum_probs=39.9
Q ss_pred cccccccccccCCCCC-------cccccCCccchhhhhhhhcCcCCCCCCCCCCCcccc
Q 004925 464 HVQQVCGLCNDLADDP-------VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 515 (723)
Q Consensus 464 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (723)
.....|.+|.+....+ +.+.|+|.||..|+..-... ...||.|+..+..+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH--CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc--CCCCCCCCCcCChh
Confidence 3456799998777665 78999999999999877654 45999999988743
No 201
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=76.13 E-value=5.2 Score=44.54 Aligned_cols=40 Identities=13% Similarity=0.102 Sum_probs=27.3
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhc
Q 004925 29 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
.+-+.|.+++..+..... +-.+|-.+-|-|||.. ++++..
T Consensus 175 ~~T~dQ~~al~~~~~~~~---~~~vlta~RGRGKSa~-lG~~~a 214 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPP---GVAAVTAARGRGKSAL-AGQLIS 214 (671)
T ss_dssp SCCHHHHHHHHHHTTCCS---EEEEEEECTTSSHHHH-HHHHHH
T ss_pred CCCHHHHHHHHHHHHhhh---CeEEEecCCCCCHHHH-HHHHHH
Confidence 566789999988776443 2246667799999944 444443
No 202
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=75.26 E-value=3.8 Score=41.07 Aligned_cols=22 Identities=9% Similarity=-0.179 Sum_probs=18.8
Q ss_pred CCCcccCCCCCcHHHHHHHHHh
Q 004925 50 RGGILADEMGMGKTIQAIALVL 71 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~ 71 (723)
...|+..+.|+|||..+.+++.
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4678899999999999887775
No 203
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=74.06 E-value=14 Score=29.60 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=43.3
Q ss_pred eEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCC
Q 004925 572 KGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTED 619 (723)
Q Consensus 572 KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~ 619 (723)
-.++|+.-+..+..+.+.++..|..++.+++......|...+..|...
T Consensus 4 ifvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekq 51 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQ 51 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTT
T ss_pred EEEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHc
Confidence 468999999999999999999999999999999999999999999864
No 204
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=72.88 E-value=3.4 Score=37.52 Aligned_cols=43 Identities=23% Similarity=0.064 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHhccC----CCCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 31 LRYQKEWLAWALKQEES----AIRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 31 ~p~Q~~~~~~~~~~~~~----~~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
.+.|.+++..+.....+ ...+.+|.-++|+|||..+-+++...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 46788888777644321 12567888999999999987766554
No 205
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=72.46 E-value=3.8 Score=43.66 Aligned_cols=24 Identities=29% Similarity=0.184 Sum_probs=19.6
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcC
Q 004925 50 RGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
.+.||.-++|+|||..|-.+....
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Confidence 567999999999999987666543
No 206
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.84 E-value=1.3 Score=46.84 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=22.3
Q ss_pred CCCCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 47 SAIRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 47 ~~~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
...+|.||.-++|+|||+.|=+++...
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345899999999999999998777643
No 207
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=70.28 E-value=3.3 Score=46.80 Aligned_cols=70 Identities=11% Similarity=0.021 Sum_probs=48.9
Q ss_pred CChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEec-hhh
Q 004925 29 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAA 107 (723)
Q Consensus 29 ~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P-~~l 107 (723)
.|-|.|++++... . +..++....|+|||.+.+.-+..+...... +...+|+|+. +..
T Consensus 2 ~L~~~Q~~av~~~------~-~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~---------------~~~~IL~lTfT~~A 59 (673)
T 1uaa_A 2 RLNPGQQQAVEFV------T-GPCLVLAGAGSGKTRVITNKIAHLIRGCGY---------------QARHIAAVTFTNKA 59 (673)
T ss_dssp CCCHHHHHHHHCC------S-SEEEECCCTTSCHHHHHHHHHHHHHHHHCC---------------CGGGEEEEESSHHH
T ss_pred CCCHHHHHHHhCC------C-CCEEEEeCCCCChHHHHHHHHHHHHHhcCC---------------CHHHeEEEeccHHH
Confidence 4778999988741 1 456777889999999988777665543211 1257899987 456
Q ss_pred HHHHHHHHHhhcC
Q 004925 108 VTQWVSEINRFTS 120 (723)
Q Consensus 108 ~~qW~~ei~~~~~ 120 (723)
...-++.+.+.++
T Consensus 60 a~em~~Rl~~~l~ 72 (673)
T 1uaa_A 60 AREMKERVGQTLG 72 (673)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcC
Confidence 6777777777765
No 208
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.45 E-value=1.3 Score=46.14 Aligned_cols=49 Identities=24% Similarity=0.283 Sum_probs=35.2
Q ss_pred CCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhhHHHHHHHHHh
Q 004925 47 SAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINR 117 (723)
Q Consensus 47 ~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~~qW~~ei~~ 117 (723)
...+|.||.-++|+|||+.|=+++.... .+++.|....++..|..|-.+
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~----------------------~~f~~v~~s~l~sk~vGese~ 228 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTD----------------------CKFIRVSGAELVQKYIGEGSR 228 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHT----------------------CEEEEEEGGGGSCSSTTHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhC----------------------CCceEEEhHHhhccccchHHH
Confidence 3458999999999999999977776431 355666667777777655433
No 209
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.95 E-value=1.5 Score=46.26 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=34.1
Q ss_pred CCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhhHHHHHHHHH
Q 004925 47 SAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEIN 116 (723)
Q Consensus 47 ~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~~qW~~ei~ 116 (723)
...+|.||.-++|+|||+.|=+++.... .+++.|-...++..|..+-.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~----------------------~~f~~v~~s~l~~~~vGese 260 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTN----------------------ATFLKLAAPQLVQMYIGEGA 260 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT----------------------CEEEEEEGGGGCSSCSSHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhC----------------------CCEEEEehhhhhhcccchHH
Confidence 3458999999999999999977776431 35566666777666654443
No 210
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=68.34 E-value=9.9 Score=38.70 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhc-c-CCCCCCcccCCCCCcHHHHHHHHHhc
Q 004925 34 QKEWLAWALKQE-E-SAIRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 34 Q~~~~~~~~~~~-~-~~~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
|...+..+.... . ....+.+|..+.|+|||..+-.++..
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 444555544433 2 22234788999999999988766663
No 211
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=68.20 E-value=26 Score=33.49 Aligned_cols=93 Identities=15% Similarity=0.149 Sum_probs=59.0
Q ss_pred CcchHHHHH-HHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHh----CCCeEEEeecCCCHHHHHHHHHhhcCCCCce
Q 004925 549 QSSTKIEAL-REEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK----SGVNCVQLVGSMSIPARDAAINRFTEDPDCK 623 (723)
Q Consensus 549 ~~s~Kl~~l-~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~----~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~ 623 (723)
.+++|--.. +-++..+.....+.++||.+..+..+..+.+.++. .++.+..+.|+.+..++...+. .++.
T Consensus 89 TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~ 163 (249)
T 3ber_A 89 TGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA-----KKPH 163 (249)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH-----TCCS
T ss_pred CCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc-----CCCC
Confidence 667887654 44444444334456799999998877666655554 3889999999887554433322 2566
Q ss_pred EEEEecCCCc------ccccccccCEEEE
Q 004925 624 IFLMSLKAGG------VALNLTVASHVFL 646 (723)
Q Consensus 624 vll~s~~~~~------eGlnL~~a~~vI~ 646 (723)
|++++...+. .++++...+.+|+
T Consensus 164 I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 164 IIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp EEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred EEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 7777754431 3456666776665
No 212
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=67.46 E-value=14 Score=34.88 Aligned_cols=92 Identities=14% Similarity=0.155 Sum_probs=60.9
Q ss_pred CcchHHHH-HHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhC-----CCeEEEeecCCCHHHHHHHHHhhcCCCCc
Q 004925 549 QSSTKIEA-LREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS-----GVNCVQLVGSMSIPARDAAINRFTEDPDC 622 (723)
Q Consensus 549 ~~s~Kl~~-l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~-----g~~~~~i~g~~~~~~r~~~i~~F~~~~~~ 622 (723)
.+++|--. ++-++..+.....+.++||.+..+..+..+.+.++.. ++.+..+.|+.+..++...+ . ++
T Consensus 70 TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~---~~ 143 (230)
T 2oxc_A 70 SGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL---K---KC 143 (230)
T ss_dssp TTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT---T---SC
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc---c---CC
Confidence 66788765 4455555433345679999999998887777777653 78889999998766544332 1 46
Q ss_pred eEEEEecCCCc-----ccccccccCEEEE
Q 004925 623 KIFLMSLKAGG-----VALNLTVASHVFL 646 (723)
Q Consensus 623 ~vll~s~~~~~-----eGlnL~~a~~vI~ 646 (723)
.|++++..... ..+++...+.+|+
T Consensus 144 ~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 144 HIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp SEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred CEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 67777765442 2345666666654
No 213
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=67.21 E-value=5.4 Score=36.88 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=20.3
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~ 74 (723)
++.+|.-++|+|||..+-+++....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5678899999999999877776543
No 214
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=66.25 E-value=23 Score=32.96 Aligned_cols=114 Identities=15% Similarity=0.102 Sum_probs=68.9
Q ss_pred CcchHHHHHHHHHHHHHhhc-CCceEEEEcccHhHHHHHHHHHHhC-----CCeEEEeecCCCHHHHHHHHHhhcCCCCc
Q 004925 549 QSSTKIEALREEIRFMVERD-GSAKGIVFSQFTSFLDLINYSLHKS-----GVNCVQLVGSMSIPARDAAINRFTEDPDC 622 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~-~~~KvIIF~~~~~~~~~l~~~L~~~-----g~~~~~i~g~~~~~~r~~~i~~F~~~~~~ 622 (723)
.+++|--...-.+...+... .+.++||.+..+..+..+.+.++.. ++.+..+.|+.+..++...+.. + .+
T Consensus 60 TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~---~-~~ 135 (220)
T 1t6n_A 60 SGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK---N-CP 135 (220)
T ss_dssp TTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH---S-CC
T ss_pred CCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc---C-CC
Confidence 56778765554444433222 2348999999998877777766654 7889999999886655444432 2 45
Q ss_pred eEEEEecCCCc-----ccccccccCEEEEECCCC--ChhhHHHHHHhhhhc
Q 004925 623 KIFLMSLKAGG-----VALNLTVASHVFLMDPWW--NPAVEQQAQDRIHRI 666 (723)
Q Consensus 623 ~vll~s~~~~~-----eGlnL~~a~~vI~~d~~w--n~~~~~Q~iGRi~R~ 666 (723)
.|++++..... ..+++...+.+|+=|.+- ........+.++.+.
T Consensus 136 ~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~ 186 (220)
T 1t6n_A 136 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRM 186 (220)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHT
T ss_pred CEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHh
Confidence 67777755432 235666777777644431 112334455555553
No 215
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.08 E-value=1.9 Score=45.15 Aligned_cols=48 Identities=23% Similarity=0.255 Sum_probs=34.1
Q ss_pred CCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhhHHHHHHHHH
Q 004925 47 SAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEIN 116 (723)
Q Consensus 47 ~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~~qW~~ei~ 116 (723)
...+|.||.-++|+|||+.|-+++.... .+++.|....++..|..|-.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~----------------------~~fi~v~~s~l~sk~vGese 261 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTS----------------------ATFLRIVGSELIQKYLGDGP 261 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHT----------------------CEEEEEESGGGCCSSSSHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhC----------------------CCEEEEEHHHhhhccCchHH
Confidence 3458999999999999999977776432 35566666667666655543
No 216
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=63.96 E-value=2.7 Score=33.72 Aligned_cols=47 Identities=28% Similarity=0.517 Sum_probs=34.0
Q ss_pred cccccccCCCC-CcccccCCccchhhhhhhhcCcCCCCCCCCCCCcccc
Q 004925 468 VCGLCNDLADD-PVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 515 (723)
Q Consensus 468 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (723)
.|..|+..... +.+.+|.|+||.+|...... .....||.|..++...
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~-~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEK-KGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHH-TTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHh-ccCCCCcCcCCeeeee
Confidence 36666666555 56899999999999965432 3456799999887743
No 217
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.42 E-value=2.1 Score=45.07 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=21.8
Q ss_pred CCCCCCcccCCCCCcHHHHHHHHHhc
Q 004925 47 SAIRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 47 ~~~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
...+|.||..++|+|||..|=+++..
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34588999999999999999777764
No 218
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.22 E-value=2.3 Score=44.99 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=22.0
Q ss_pred CCCCCCcccCCCCCcHHHHHHHHHhc
Q 004925 47 SAIRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 47 ~~~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
...+|.||.-++|+|||+.|=+++..
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 44589999999999999999777764
No 219
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=62.96 E-value=17 Score=43.41 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=73.0
Q ss_pred CcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHh---CCCeEEEeecCCCHHHHHHHHHhhcCCCCceEE
Q 004925 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK---SGVNCVQLVGSMSIPARDAAINRFTEDPDCKIF 625 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~---~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vl 625 (723)
.+++|-...+-.+.... ..+.++||.+..+..+..+.+.|+. .++.+..++|+++..+|...+..+..+ .+.++
T Consensus 102 TGSGKTl~~l~~il~~~--~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g-~~~Il 178 (1104)
T 4ddu_A 102 TGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED-DYHIL 178 (1104)
T ss_dssp TTCCHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTS-CCSEE
T ss_pred CCCcHHHHHHHHHHHHH--hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCC-CCCEE
Confidence 67888887666665554 4567999999999999999999988 578999999999988888888888765 57888
Q ss_pred EEecCCCccc---ccccccCEEEE
Q 004925 626 LMSLKAGGVA---LNLTVASHVFL 646 (723)
Q Consensus 626 l~s~~~~~eG---lnL~~a~~vI~ 646 (723)
|+|+..+..- +++...+.+|+
T Consensus 179 V~Tp~rL~~~l~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 179 VFSTQFVSKNREKLSQKRFDFVFV 202 (1104)
T ss_dssp EEEHHHHHHSHHHHHTSCCSEEEE
T ss_pred EECHHHHHHHHHhhcccCcCEEEE
Confidence 8887655222 44556666665
No 220
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=62.35 E-value=17 Score=42.16 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=20.2
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcC
Q 004925 50 RGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
++.+|.-++|+|||..+-+++...
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 678999999999999987777654
No 221
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=61.79 E-value=1.7 Score=36.61 Aligned_cols=47 Identities=21% Similarity=0.382 Sum_probs=0.4
Q ss_pred cccccccccCCCCC------------------cccccCCccchhhhhhhhcCcCCCCCCCCCCCccc
Q 004925 466 QQVCGLCNDLADDP------------------VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 514 (723)
Q Consensus 466 ~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (723)
...|.+|....+.+ +.+.|+|.|+..|+..-... ...||+|+.++..
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREWEF 112 (117)
T ss_dssp C------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--CCcCCCCCCeeee
Confidence 35688888665542 23689999999999876655 5689999998653
No 222
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=61.49 E-value=20 Score=29.57 Aligned_cols=77 Identities=10% Similarity=0.012 Sum_probs=38.4
Q ss_pred HHhCCCeEEEeecCCCHHHHHHHHHhhcC---CCCceEEEEecCCCccccccc--ccCEEEEECCCCChhhHHHHHHhhh
Q 004925 590 LHKSGVNCVQLVGSMSIPARDAAINRFTE---DPDCKIFLMSLKAGGVALNLT--VASHVFLMDPWWNPAVEQQAQDRIH 664 (723)
Q Consensus 590 L~~~g~~~~~i~g~~~~~~r~~~i~~F~~---~~~~~vll~s~~~~~eGlnL~--~a~~vI~~d~~wn~~~~~Q~iGRi~ 664 (723)
+......++.++-.++...-...++..+. .+...+++++.....+-.... .++. ++.-|.++..+.+++.+.+
T Consensus 43 l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~--~l~KP~~~~~L~~~i~~~~ 120 (127)
T 3i42_A 43 MSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDF--YLEKPIDIASLEPILQSIE 120 (127)
T ss_dssp HHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSE--EEESSCCHHHHHHHHHHHC
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHH--heeCCCCHHHHHHHHHHhh
Confidence 34455666776655543333344444433 345566666644332211111 2332 4556678888888888877
Q ss_pred hcCC
Q 004925 665 RIGQ 668 (723)
Q Consensus 665 R~Gq 668 (723)
+-++
T Consensus 121 ~~~~ 124 (127)
T 3i42_A 121 GHHH 124 (127)
T ss_dssp ----
T ss_pred ccCC
Confidence 7554
No 223
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=61.45 E-value=7.2 Score=44.42 Aligned_cols=71 Identities=14% Similarity=0.029 Sum_probs=48.5
Q ss_pred cCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechh-
Q 004925 28 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVA- 106 (723)
Q Consensus 28 ~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~- 106 (723)
..|-|.|++++... . +..++-...|+|||.+.+.-++++...... +...+|+|+...
T Consensus 10 ~~Ln~~Q~~av~~~------~-g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~---------------~p~~IL~vTFTnk 67 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT------E-GPLLIMAGAGSGKTRVLTHRIAYLMAEKHV---------------APWNILAITFTNK 67 (724)
T ss_dssp TTSCHHHHHHHHCC------S-SCEEEEECTTSCHHHHHHHHHHHHHHTTCC---------------CGGGEEEEESSHH
T ss_pred hhCCHHHHHHHhCC------C-CCEEEEEcCCCCHHHHHHHHHHHHHHhcCC---------------CHHHeEEEeccHH
Confidence 46889999988741 1 556777789999999988777766543221 126889999854
Q ss_pred hHHHHHHHHHhhcC
Q 004925 107 AVTQWVSEINRFTS 120 (723)
Q Consensus 107 l~~qW~~ei~~~~~ 120 (723)
....-++-+.+.++
T Consensus 68 AA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 68 AAREMRERVQSLLG 81 (724)
T ss_dssp HHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhc
Confidence 45556666666543
No 224
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=60.70 E-value=4.5 Score=35.22 Aligned_cols=33 Identities=12% Similarity=-0.003 Sum_probs=21.1
Q ss_pred HHHHHHHHhccCCCCCCcccCCCCCcHHHHHHH
Q 004925 36 EWLAWALKQEESAIRGGILADEMGMGKTIQAIA 68 (723)
Q Consensus 36 ~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~ 68 (723)
..+...+........+.+|.-++|+|||..|-+
T Consensus 14 ~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~ 46 (143)
T 3co5_A 14 QEMNREVEAAAKRTSPVFLTGEAGSPFETVARY 46 (143)
T ss_dssp HHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGG
T ss_pred HHHHHHHHHHhCCCCcEEEECCCCccHHHHHHH
Confidence 333333333333337789999999999976643
No 225
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=60.17 E-value=46 Score=27.06 Aligned_cols=66 Identities=12% Similarity=0.071 Sum_probs=39.9
Q ss_pred HHHHHHHHhhcCCceEEEEccc------HhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEE
Q 004925 558 REEIRFMVERDGSAKGIVFSQF------TSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFL 626 (723)
Q Consensus 558 ~~~l~~~~~~~~~~KvIIF~~~------~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll 626 (723)
.+.|+..++ ..+|+||+.. =..-....++|...|+++..++=....+.+..+........-+.++|
T Consensus 8 ~~~v~~~i~---~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~ifi 79 (109)
T 3ipz_A 8 KDTLEKLVN---SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLYI 79 (109)
T ss_dssp HHHHHHHHT---SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEEE
T ss_pred HHHHHHHHc---cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEEE
Confidence 344555543 3489999984 45678889999999998887765444444444433333333344443
No 226
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=58.83 E-value=60 Score=27.03 Aligned_cols=67 Identities=15% Similarity=0.073 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhcCCceEEEEccc------HhHHHHHHHHHHhCCCe---EEEeecCCCHHHHHHHHHhhcCCCCceEEE
Q 004925 557 LREEIRFMVERDGSAKGIVFSQF------TSFLDLINYSLHKSGVN---CVQLVGSMSIPARDAAINRFTEDPDCKIFL 626 (723)
Q Consensus 557 l~~~l~~~~~~~~~~KvIIF~~~------~~~~~~l~~~L~~~g~~---~~~i~g~~~~~~r~~~i~~F~~~~~~~vll 626 (723)
+.+.|+.++.. .+|+||+.. =..-....++|...|++ +..++=....+.+..+........-++|+|
T Consensus 5 ~~~~v~~~i~~---~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~vfI 80 (121)
T 3gx8_A 5 IRKAIEDAIES---APVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQLYV 80 (121)
T ss_dssp HHHHHHHHHHS---CSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEEEE
T ss_pred HHHHHHHHhcc---CCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 34455555433 389999984 34577888888888988 766665545444444433333333345544
No 227
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=58.12 E-value=5.8 Score=37.04 Aligned_cols=24 Identities=8% Similarity=0.128 Sum_probs=20.0
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcC
Q 004925 50 RGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
++.++..++|+|||..|.+++...
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 357789999999999998887753
No 228
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=57.98 E-value=27 Score=42.00 Aligned_cols=98 Identities=11% Similarity=0.003 Sum_probs=69.6
Q ss_pred cCcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHh----CCCeEEEeecCCCHHHHHHHHHhhcCCCCce
Q 004925 548 FQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK----SGVNCVQLVGSMSIPARDAAINRFTEDPDCK 623 (723)
Q Consensus 548 ~~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~----~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~ 623 (723)
..+++|....+..+.... ..+.+++|.+..+..+....+.+.+ .++.+..++|..+..++...++....+ .+.
T Consensus 632 ~TGsGKT~val~aa~~~~--~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g-~~d 708 (1151)
T 2eyq_A 632 DVGFGKTEVAMRAAFLAV--DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEG-KID 708 (1151)
T ss_dssp CCCTTTHHHHHHHHHHHH--TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTT-CCS
T ss_pred CCCCCHHHHHHHHHHHHH--HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcC-CCC
Confidence 356788866554443332 3456999999998777666666553 378899999999988988888888765 677
Q ss_pred EEEEecCCCcccccccccCEEEEEC
Q 004925 624 IFLMSLKAGGVALNLTVASHVFLMD 648 (723)
Q Consensus 624 vll~s~~~~~eGlnL~~a~~vI~~d 648 (723)
++|++.......+++...+.+|+=+
T Consensus 709 IvV~T~~ll~~~~~~~~l~lvIiDE 733 (1151)
T 2eyq_A 709 ILIGTHKLLQSDVKFKDLGLLIVDE 733 (1151)
T ss_dssp EEEECTHHHHSCCCCSSEEEEEEES
T ss_pred EEEECHHHHhCCccccccceEEEec
Confidence 8888877776667776666555533
No 229
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=57.89 E-value=8.5 Score=38.57 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.3
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~ 74 (723)
.+.+|..++|+|||..+.+++....
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999988776554
No 230
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=57.30 E-value=6.7 Score=39.82 Aligned_cols=46 Identities=11% Similarity=-0.025 Sum_probs=34.9
Q ss_pred ChHHHHHHHHHHHHhccC-CCC-CCcccCCCCCcHHHHHHHHHhcCcc
Q 004925 30 LLRYQKEWLAWALKQEES-AIR-GGILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 30 L~p~Q~~~~~~~~~~~~~-~~~-g~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
++|+|.+....+.+.... ... ..++..+.|+|||..|..++.....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 579999988877765543 223 3688899999999999888876554
No 231
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=57.09 E-value=22 Score=28.41 Aligned_cols=18 Identities=6% Similarity=0.084 Sum_probs=10.0
Q ss_pred ECCCCChhhHHHHHHhhh
Q 004925 647 MDPWWNPAVEQQAQDRIH 664 (723)
Q Consensus 647 ~d~~wn~~~~~Q~iGRi~ 664 (723)
+.-|.++..+.+++.++.
T Consensus 99 l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 99 LSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp CSSCSTTHHHHHHHHTTC
T ss_pred ccCCCCHHHHHHHHHHHh
Confidence 344556666666665543
No 232
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=56.30 E-value=14 Score=39.67 Aligned_cols=65 Identities=8% Similarity=0.066 Sum_probs=46.1
Q ss_pred CceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEEC
Q 004925 570 SAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMD 648 (723)
Q Consensus 570 ~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d 648 (723)
+.+|||.+......+.|...|...|++...+... ..+.. +.+ .| .......|.-++....+|+-+
T Consensus 382 ~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~----------~~~~~-g~v--~i-~~g~L~~GF~~p~~klaVITE 446 (483)
T 3hjh_A 382 DGPVVFSVESEGRREALGELLARIKIAPQRIMRL----------DEASD-RGR--YL-MIGAAEHGFVDTVRNLALICE 446 (483)
T ss_dssp CSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG----------GGCCT-TCE--EE-EESCCCSCEEETTTTEEEEEH
T ss_pred CCeEEEEeCChHHHHHHHHHHHHcCCCceecCch----------hhcCC-CcE--EE-EEcccccCcccCCCCEEEEEc
Confidence 4699999999999999999999999876554321 11222 233 23 336778999999888888754
No 233
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=55.11 E-value=15 Score=31.15 Aligned_cols=52 Identities=19% Similarity=0.114 Sum_probs=38.0
Q ss_pred chHHHHHHHHHHHHHhhcCC-ceEEEEcc-cHhHHHHHHHHHHhCCCeEEEeecCCC
Q 004925 551 STKIEALREEIRFMVERDGS-AKGIVFSQ-FTSFLDLINYSLHKSGVNCVQLVGSMS 605 (723)
Q Consensus 551 s~Kl~~l~~~l~~~~~~~~~-~KvIIF~~-~~~~~~~l~~~L~~~g~~~~~i~g~~~ 605 (723)
.+++..+.+.+..+ .++ .++||||. .-.........|+..|+.+..+.|++.
T Consensus 72 ~~~~~~~~~~~~~~---~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 72 SYKLKDIYLQAAEL---ALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp GGGHHHHHHHHHHH---HTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred cccHHHHHHHHHHh---ccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 34555666666554 234 68999994 656677888899999999999999874
No 234
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=54.75 E-value=68 Score=26.66 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=35.0
Q ss_pred eEEEEccc------HhHHHHHHHHHHhCCC-eEEEeecCCCHHHHHHHHHhhcC-CCCceEEEEe
Q 004925 572 KGIVFSQF------TSFLDLINYSLHKSGV-NCVQLVGSMSIPARDAAINRFTE-DPDCKIFLMS 628 (723)
Q Consensus 572 KvIIF~~~------~~~~~~l~~~L~~~g~-~~~~i~g~~~~~~r~~~i~~F~~-~~~~~vll~s 628 (723)
+|+||+.. =..-....+.|...|+ ++..++=...++-| +.+..+.. ..-++|+|-.
T Consensus 21 ~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r-~~l~~~sg~~TvPqIFI~g 84 (118)
T 2wul_A 21 KVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELR-QGIKDYSNWPTIPQVYLNG 84 (118)
T ss_dssp SEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHH-HHHHHHHTCCSSCEEEETT
T ss_pred CEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHH-HHHHHhccCCCCCeEeECC
Confidence 99999763 2345667778888887 46666655555444 45555544 4446766633
No 235
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=54.24 E-value=54 Score=26.92 Aligned_cols=31 Identities=13% Similarity=0.054 Sum_probs=20.2
Q ss_pred CceEEEEcccHhHHHHHHHHHHhCCCeEEEe
Q 004925 570 SAKGIVFSQFTSFLDLINYSLHKSGVNCVQL 600 (723)
Q Consensus 570 ~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i 600 (723)
+.+++|..........+...|...|+.+...
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~ 36 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIA 36 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEe
Confidence 3467777777777777777777766655443
No 236
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=54.24 E-value=93 Score=25.78 Aligned_cols=19 Identities=0% Similarity=-0.155 Sum_probs=10.1
Q ss_pred ECCCCChhhHHHHHHhhhh
Q 004925 647 MDPWWNPAVEQQAQDRIHR 665 (723)
Q Consensus 647 ~d~~wn~~~~~Q~iGRi~R 665 (723)
+.-|.++..+.+++.++.+
T Consensus 108 l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 108 ITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp EESSCCHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHH
Confidence 3345556666655555544
No 237
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=53.98 E-value=93 Score=25.86 Aligned_cols=29 Identities=17% Similarity=0.054 Sum_probs=17.4
Q ss_pred ceEEEEcccHhHHHHHHHHHHhCCCeEEE
Q 004925 571 AKGIVFSQFTSFLDLINYSLHKSGVNCVQ 599 (723)
Q Consensus 571 ~KvIIF~~~~~~~~~l~~~L~~~g~~~~~ 599 (723)
.+++|..........+...|...|+.+..
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~ 34 (140)
T 3h5i_A 6 KKILIVEDSKFQAKTIANILNKYGYTVEI 34 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHcCCEEEE
Confidence 45666666666666666666666655443
No 238
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=53.36 E-value=31 Score=36.23 Aligned_cols=91 Identities=13% Similarity=0.095 Sum_probs=62.4
Q ss_pred CcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhC-CC---eEEEeecCCCHHHHHHHHHhhcCCCCceE
Q 004925 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS-GV---NCVQLVGSMSIPARDAAINRFTEDPDCKI 624 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~-g~---~~~~i~g~~~~~~r~~~i~~F~~~~~~~v 624 (723)
.+++|--.....+...+. .++.++||.+.....+....+.+.+. +. .+..++|+.+..++..... ...|
T Consensus 32 tG~GKT~~~~~~~~~~~~-~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~------~~~i 104 (494)
T 1wp9_A 32 TGLGKTLIAMMIAEYRLT-KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA------RAKV 104 (494)
T ss_dssp TTSCHHHHHHHHHHHHHH-HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH------HCSE
T ss_pred CCCCHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc------CCCE
Confidence 567888887777776654 45679999999988877777777654 66 8999999998776554432 2456
Q ss_pred EEEecCCCcc-----cccccccCEEEE
Q 004925 625 FLMSLKAGGV-----ALNLTVASHVFL 646 (723)
Q Consensus 625 ll~s~~~~~e-----GlnL~~a~~vI~ 646 (723)
+|++...+.. .+++...+.||+
T Consensus 105 vv~T~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 105 IVATPQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp EEECHHHHHHHHHTTSCCTTSCSEEEE
T ss_pred EEecHHHHHHHHhcCCcchhhceEEEE
Confidence 6766654432 234555566655
No 239
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=53.10 E-value=14 Score=44.68 Aligned_cols=51 Identities=18% Similarity=0.120 Sum_probs=36.6
Q ss_pred ccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhhHHHHHHHHHhhcC
Q 004925 54 LADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFTS 120 (723)
Q Consensus 54 Lad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~~qW~~ei~~~~~ 120 (723)
+-...|+|||.+.+.-++++...... ..++|++||..+..+-...+...++
T Consensus 6 V~agAGSGKT~~l~~ri~~ll~~~~~----------------~~~il~lVP~q~TFt~~~rl~~~l~ 56 (1166)
T 3u4q_B 6 LVGRSGSGKTKLIINSIQDELRRAPF----------------GKPIIFLVPDQMTFLMEYELAKTPD 56 (1166)
T ss_dssp EEECTTSSHHHHHHHHHHHHHHHCTT----------------SSCEEEECCGGGHHHHHHHHTCCSS
T ss_pred EEeCCCCChHHHHHHHHHHHHHhCCC----------------CCcEEEEecCcccHHHHHHHHHhhh
Confidence 34468999999998877776554321 1689999999988776666655543
No 240
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=52.88 E-value=7.2 Score=41.45 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=21.3
Q ss_pred CCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 49 IRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 49 ~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
.+|.||.-++|+|||..|-+++...
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 3778999999999999998877654
No 241
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=52.71 E-value=15 Score=36.52 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=20.5
Q ss_pred CCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 49 IRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 49 ~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
.++.+|.-++|+|||..|-+++...
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHh
Confidence 3678999999999999987777643
No 242
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=52.33 E-value=69 Score=30.13 Aligned_cols=93 Identities=12% Similarity=0.081 Sum_probs=58.7
Q ss_pred CcchHHHH-HHHHHHHHHhh-----cCCceEEEEcccHhHHHHHHHHHH----hCCCeEEEeecCCCHHHHHHHHHhhcC
Q 004925 549 QSSTKIEA-LREEIRFMVER-----DGSAKGIVFSQFTSFLDLINYSLH----KSGVNCVQLVGSMSIPARDAAINRFTE 618 (723)
Q Consensus 549 ~~s~Kl~~-l~~~l~~~~~~-----~~~~KvIIF~~~~~~~~~l~~~L~----~~g~~~~~i~g~~~~~~r~~~i~~F~~ 618 (723)
.+++|--. ++-++..+... ..+.++||.+..+..+..+.+.++ ..++.+..+.|+.+.......+..
T Consensus 75 TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--- 151 (242)
T 3fe2_A 75 TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER--- 151 (242)
T ss_dssp TTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH---
T ss_pred CcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC---
Confidence 67788755 44445444321 245689999999877665555444 458999999999886655444432
Q ss_pred CCCceEEEEecCCCcc-----cccccccCEEEE
Q 004925 619 DPDCKIFLMSLKAGGV-----ALNLTVASHVFL 646 (723)
Q Consensus 619 ~~~~~vll~s~~~~~e-----GlnL~~a~~vI~ 646 (723)
++.|++++...... .+++...+++|+
T Consensus 152 --~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 152 --GVEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp --CCSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred --CCCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 45677777644321 345667776665
No 243
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=52.26 E-value=63 Score=25.69 Aligned_cols=16 Identities=6% Similarity=-0.016 Sum_probs=9.0
Q ss_pred CCCCChhhHHHHHHhh
Q 004925 648 DPWWNPAVEQQAQDRI 663 (723)
Q Consensus 648 d~~wn~~~~~Q~iGRi 663 (723)
.-|+++..+.+++.++
T Consensus 99 ~Kp~~~~~l~~~i~~~ 114 (116)
T 3a10_A 99 VKSFNFDELKEKVKKL 114 (116)
T ss_dssp ECCSSTHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHHH
Confidence 3455666666665554
No 244
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=52.20 E-value=11 Score=34.02 Aligned_cols=41 Identities=20% Similarity=0.132 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 31 LRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 31 ~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
+..++..+...+.. ...++.+|.-+.|+|||..+-.++...
T Consensus 27 ~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 27 RDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34444444433332 222567899999999999987776654
No 245
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=52.12 E-value=5.4 Score=39.66 Aligned_cols=25 Identities=16% Similarity=-0.077 Sum_probs=20.3
Q ss_pred CCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 49 IRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 49 ~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
.+|.+|.-++|+|||..|-+++...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3677888999999999987777654
No 246
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=50.66 E-value=1.2e+02 Score=28.48 Aligned_cols=129 Identities=12% Similarity=0.046 Sum_probs=74.3
Q ss_pred HHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcc----cccccccCEEEEECCCCChhhHHHHHHhhhh
Q 004925 590 LHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGV----ALNLTVASHVFLMDPWWNPAVEQQAQDRIHR 665 (723)
Q Consensus 590 L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~e----GlnL~~a~~vI~~d~~wn~~~~~Q~iGRi~R 665 (723)
+......++.++-.++..+=...++.....+...|++++.....+ ++.. .|+. ++.-|.++..+.+++.++.|
T Consensus 77 ~~~~~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~lt~~~~~~~~~~a~~~-Ga~~--yl~Kp~~~~~L~~~i~~~l~ 153 (249)
T 3q9s_A 77 AREDHPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLTARDTVEEKVRLLGL-GADD--YLIKPFHPDELLARVKVQLR 153 (249)
T ss_dssp HHHSCCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEEESCCSHHHHHHHHHH-TCSE--EEESSCCHHHHHHHHHHHHC
T ss_pred HhcCCCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEEECCCCHHHHHHHHHC-CCcE--EEECCCCHHHHHHHHHHHHh
Confidence 344567788888888876666677777665567777777544322 2221 2333 34457789999999999888
Q ss_pred cCCcccEEEEEEE---------e------CCCHHHHHHHHH-------HHHHHHhhcccCCCccccCCCCHHHHHhhh
Q 004925 666 IGQYKPIRIVRFL---------I------ENTIEERILKLQ-------EKKKLVFEGTVGGSADAFGKLTEADMRFLF 721 (723)
Q Consensus 666 ~Gq~~~V~v~~l~---------~------~~t~ee~~~~~~-------~~K~~~~~~~~~~~~~~~~~~~~~~~~~l~ 721 (723)
-+......+-.+. . -..-|-.++..+ ..+..+.+.+++.........-+..+..|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~evL~ll~~g~~~~~s~~eIa~~l~~~~l~~s~~TV~~hi~~lr 231 (249)
T 3q9s_A 154 QRTSESLSMGDLTLDPQKRLVTYKGEELRLSPKEFDILALLIRQPGRVYSRQEIGQEIWQGRLPEGSNVVDVHMANLR 231 (249)
T ss_dssp CCCSCCEEETTEEEETTTTEEEETTEEECCCHHHHHHHHHHHHSTTCCCCHHHHHHHHHTTCSCTTCSHHHHHHHHHH
T ss_pred hcccCceeECCEEEecccCEEEECCEEeecCHHHHHHHHHHHHCCCceEcHHHHHHHhcCCCCCCCccCHHHHHHHHH
Confidence 5543222111000 0 123455666666 345677777776644444444455555443
No 247
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=50.37 E-value=49 Score=31.00 Aligned_cols=92 Identities=12% Similarity=0.056 Sum_probs=55.2
Q ss_pred CcchHHHHHHH-HHHHHHh----hcCCceEEEEcccHhHHHHHHHHHHhC----CCeEEEeecCCCHHHHHHHHHhhcCC
Q 004925 549 QSSTKIEALRE-EIRFMVE----RDGSAKGIVFSQFTSFLDLINYSLHKS----GVNCVQLVGSMSIPARDAAINRFTED 619 (723)
Q Consensus 549 ~~s~Kl~~l~~-~l~~~~~----~~~~~KvIIF~~~~~~~~~l~~~L~~~----g~~~~~i~g~~~~~~r~~~i~~F~~~ 619 (723)
.+++|--...- ++..+.. ..++.++||.+..+..+..+.+.++.. ++.+..+.|+.+.......+
T Consensus 71 TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------ 144 (236)
T 2pl3_A 71 TGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI------ 144 (236)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH------
T ss_pred CCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC------
Confidence 56778765443 3333322 134568999999988877777776654 57888899987654433332
Q ss_pred CCceEEEEecCCCcc------cccccccCEEEE
Q 004925 620 PDCKIFLMSLKAGGV------ALNLTVASHVFL 646 (723)
Q Consensus 620 ~~~~vll~s~~~~~e------GlnL~~a~~vI~ 646 (723)
.++.|++++...... .+++...+++|+
T Consensus 145 ~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 145 NNINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred CCCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 256677877654422 245556655554
No 248
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=49.52 E-value=26 Score=33.75 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.1
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcC
Q 004925 50 RGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
.+.+|.-++|+|||..|-++....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 778999999999999887766554
No 249
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=49.31 E-value=23 Score=33.08 Aligned_cols=94 Identities=7% Similarity=0.032 Sum_probs=54.3
Q ss_pred CcchHHHH-HHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHh----CCCeEEEeecCCCHHHHHHHHHhhcCCCCce
Q 004925 549 QSSTKIEA-LREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK----SGVNCVQLVGSMSIPARDAAINRFTEDPDCK 623 (723)
Q Consensus 549 ~~s~Kl~~-l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~----~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~ 623 (723)
.+++|--. ++-++..+.....+.++||.+..+..+..+.+.+.. .++.+..+.|+.+..+... .+. .+.
T Consensus 60 TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~---~~~ 133 (224)
T 1qde_A 60 SGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE---GLR---DAQ 133 (224)
T ss_dssp TTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT---TCS
T ss_pred CCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh---cCC---CCC
Confidence 67788866 555555443334556899999998887766666654 3788888888876444322 222 366
Q ss_pred EEEEecCCCc-----ccccccccCEEEEEC
Q 004925 624 IFLMSLKAGG-----VALNLTVASHVFLMD 648 (723)
Q Consensus 624 vll~s~~~~~-----eGlnL~~a~~vI~~d 648 (723)
|++++..... ..+++...+.+|+=+
T Consensus 134 iiv~Tp~~l~~~~~~~~~~~~~~~~iViDE 163 (224)
T 1qde_A 134 IVVGTPGRVFDNIQRRRFRTDKIKMFILDE 163 (224)
T ss_dssp EEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred EEEECHHHHHHHHHhCCcchhhCcEEEEcC
Confidence 7777765432 244566666666533
No 250
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=48.73 E-value=81 Score=25.68 Aligned_cols=65 Identities=11% Similarity=0.184 Sum_probs=39.4
Q ss_pred HHHHHHHHhhcCCceEEEEcc-----cH-hHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcC-CCCceEEE
Q 004925 558 REEIRFMVERDGSAKGIVFSQ-----FT-SFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE-DPDCKIFL 626 (723)
Q Consensus 558 ~~~l~~~~~~~~~~KvIIF~~-----~~-~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~-~~~~~vll 626 (723)
.+.|+.++. ..+|+||+. .. ..-....++|...|+++..++=....+.+.. +.++.. ..-+.|+|
T Consensus 6 ~~~v~~~i~---~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~-l~~~~g~~tvP~ifi 77 (111)
T 3zyw_A 6 NLRLKKLTH---AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQG-LKAYSSWPTYPQLYV 77 (111)
T ss_dssp HHHHHHHHT---SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHH-HHHHHTCCSSCEEEE
T ss_pred HHHHHHHHh---cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHH-HHHHHCCCCCCEEEE
Confidence 344555543 349999997 33 3467888889999998888765545444444 444432 32344443
No 251
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=48.32 E-value=57 Score=33.21 Aligned_cols=94 Identities=16% Similarity=0.133 Sum_probs=59.9
Q ss_pred CcchHHHHHHHHHHHHHh-hcCCceEEEEcccHhHHHHHHHHHHhC-----CCeEEEeecCCCHHHHHHHHHhhcCCCCc
Q 004925 549 QSSTKIEALREEIRFMVE-RDGSAKGIVFSQFTSFLDLINYSLHKS-----GVNCVQLVGSMSIPARDAAINRFTEDPDC 622 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~-~~~~~KvIIF~~~~~~~~~l~~~L~~~-----g~~~~~i~g~~~~~~r~~~i~~F~~~~~~ 622 (723)
.+++|--...-.+...+. ...+.++||.+..+..+..+.+.+... ++.+..+.|+.+..+....+.. +.+
T Consensus 54 TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~ 129 (391)
T 1xti_A 54 SGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK----NCP 129 (391)
T ss_dssp SCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHH----SCC
T ss_pred CCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhc----CCC
Confidence 567787655444433322 223568999999998887777776654 7899999999886665544433 245
Q ss_pred eEEEEecCCCc-----ccccccccCEEEE
Q 004925 623 KIFLMSLKAGG-----VALNLTVASHVFL 646 (723)
Q Consensus 623 ~vll~s~~~~~-----eGlnL~~a~~vI~ 646 (723)
.|++++...+. ..+++...+.+|+
T Consensus 130 ~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 130 HIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred CEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 66777755442 2345566666665
No 252
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=47.95 E-value=47 Score=30.92 Aligned_cols=93 Identities=10% Similarity=0.110 Sum_probs=54.4
Q ss_pred CcchHHHH-HHHHHHHHHh------hcCCceEEEEcccHhHHHHHHHHHHhC---CCeEEEeecCCCHHHHHHHHHhhcC
Q 004925 549 QSSTKIEA-LREEIRFMVE------RDGSAKGIVFSQFTSFLDLINYSLHKS---GVNCVQLVGSMSIPARDAAINRFTE 618 (723)
Q Consensus 549 ~~s~Kl~~-l~~~l~~~~~------~~~~~KvIIF~~~~~~~~~l~~~L~~~---g~~~~~i~g~~~~~~r~~~i~~F~~ 618 (723)
.+++|--. ++-.+..+.. ...+.++||.+..+..+..+.+.++.. ++.+..+.|+.+..++... +..
T Consensus 66 TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 142 (228)
T 3iuy_A 66 TGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---ISK 142 (228)
T ss_dssp TTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HHS
T ss_pred CCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hcC
Confidence 66788754 3333433211 125678999999999888888888763 7888888888764433222 222
Q ss_pred CCCceEEEEecCCCcc-----cccccccCEEEE
Q 004925 619 DPDCKIFLMSLKAGGV-----ALNLTVASHVFL 646 (723)
Q Consensus 619 ~~~~~vll~s~~~~~e-----GlnL~~a~~vI~ 646 (723)
++.|++++...... .+++...+.+|+
T Consensus 143 --~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 143 --GVDIIIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp --CCSEEEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred --CCCEEEECHHHHHHHHHcCCcCcccceEEEE
Confidence 45677777544432 445666776665
No 253
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=47.50 E-value=12 Score=38.32 Aligned_cols=43 Identities=21% Similarity=0.158 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHhccCC---CCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 31 LRYQKEWLAWALKQEESA---IRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 31 ~p~Q~~~~~~~~~~~~~~---~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
.+.++..+..+......+ .++.+|.-++|+|||..|-+++...
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 455666555555444332 2467899999999999998877664
No 254
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=47.12 E-value=88 Score=25.88 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=34.5
Q ss_pred eEEEEccc------HhHHHHHHHHHHhCCCe-EEEeecCCCHHHHHHHHHhhc-CCCCceEEE
Q 004925 572 KGIVFSQF------TSFLDLINYSLHKSGVN-CVQLVGSMSIPARDAAINRFT-EDPDCKIFL 626 (723)
Q Consensus 572 KvIIF~~~------~~~~~~l~~~L~~~g~~-~~~i~g~~~~~~r~~~i~~F~-~~~~~~vll 626 (723)
+|+||+.. =..-....++|...|++ +..++=....+.++. +.++. ...-+.|+|
T Consensus 21 ~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~-l~~~tg~~tvP~vfI 82 (118)
T 2wem_A 21 KVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQG-IKDYSNWPTIPQVYL 82 (118)
T ss_dssp SEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHH-HHHHHTCCSSCEEEE
T ss_pred CEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHH-HHHHhCCCCcCeEEE
Confidence 89999984 34577888889999985 777765555444444 44443 232344443
No 255
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=46.70 E-value=5 Score=40.57 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=20.8
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcC
Q 004925 50 RGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
+|.+|.-++|+|||..|-+++...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 678999999999999998887654
No 256
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=46.43 E-value=29 Score=37.46 Aligned_cols=93 Identities=13% Similarity=0.096 Sum_probs=57.5
Q ss_pred CcchHHHHHHHHHHHHHhhcC---CceEEEEcccHhHHHHHHHHHHh----CCCeEEEeecCCCHHHHHHHHHhhcCCCC
Q 004925 549 QSSTKIEALREEIRFMVERDG---SAKGIVFSQFTSFLDLINYSLHK----SGVNCVQLVGSMSIPARDAAINRFTEDPD 621 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~---~~KvIIF~~~~~~~~~l~~~L~~----~g~~~~~i~g~~~~~~r~~~i~~F~~~~~ 621 (723)
.+++|.-...-.+.+.+...+ +.++||.+..+..+..+.+.+.. .++.+..++|+.+...+...+.. +
T Consensus 28 tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~ 102 (555)
T 3tbk_A 28 TGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIE-----D 102 (555)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHH-----H
T ss_pred CCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhc-----C
Confidence 667888776666665554444 67899999998766555554444 49999999999865443222211 3
Q ss_pred ceEEEEecCCCccc-----c-cccccCEEEE
Q 004925 622 CKIFLMSLKAGGVA-----L-NLTVASHVFL 646 (723)
Q Consensus 622 ~~vll~s~~~~~eG-----l-nL~~a~~vI~ 646 (723)
+.|+|++...+..- + ++...+++|+
T Consensus 103 ~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 133 (555)
T 3tbk_A 103 NDIIILTPQILVNNLNNGAIPSLSVFTLMIF 133 (555)
T ss_dssp CSEEEECHHHHHHHHHTSSSCCGGGCSEEEE
T ss_pred CCEEEECHHHHHHHHhcCcccccccCCEEEE
Confidence 45667666554332 2 3445555554
No 257
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=45.72 E-value=1e+02 Score=24.74 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=15.4
Q ss_pred eEEEEcccHhHHHHHHHHHHhCCCeEE
Q 004925 572 KGIVFSQFTSFLDLINYSLHKSGVNCV 598 (723)
Q Consensus 572 KvIIF~~~~~~~~~l~~~L~~~g~~~~ 598 (723)
+++|.-........+...|+..|+.+.
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~g~~v~ 30 (120)
T 3f6p_A 4 KILVVDDEKPIADILEFNLRKEGYEVH 30 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred eEEEEECCHHHHHHHHHHHHhCCEEEE
Confidence 555555555555666666655555543
No 258
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=45.45 E-value=12 Score=35.77 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=17.9
Q ss_pred CcccCCCCCcHHHHHHHHHhc
Q 004925 52 GILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~ 72 (723)
.+++-++|+|||..++.++..
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 488999999999999887654
No 259
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=45.28 E-value=90 Score=25.84 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=14.0
Q ss_pred ceEEEEcccHhHHHHHHHHHHhCCCeE
Q 004925 571 AKGIVFSQFTSFLDLINYSLHKSGVNC 597 (723)
Q Consensus 571 ~KvIIF~~~~~~~~~l~~~L~~~g~~~ 597 (723)
.+++|..........+...|...|+.+
T Consensus 7 ~~iLivdd~~~~~~~l~~~l~~~g~~v 33 (140)
T 3grc_A 7 PRILICEDDPDIARLLNLMLEKGGFDS 33 (140)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHCCCeE
Confidence 345555555555555555555555443
No 260
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=45.07 E-value=11 Score=36.58 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=20.0
Q ss_pred CCCCcccCCCCCcHHHHHHHHHhc
Q 004925 49 IRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 49 ~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
.+|.+|.-++|+|||..|-+++..
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 367899999999999998777653
No 261
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=44.96 E-value=15 Score=39.00 Aligned_cols=24 Identities=38% Similarity=0.432 Sum_probs=20.9
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcC
Q 004925 50 RGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
+|.||..++|+|||..|-+++...
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHh
Confidence 678999999999999998877653
No 262
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=44.92 E-value=1.1e+02 Score=26.10 Aligned_cols=68 Identities=9% Similarity=-0.005 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhcCCceEEEEcc------cHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEE
Q 004925 556 ALREEIRFMVERDGSAKGIVFSQ------FTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFL 626 (723)
Q Consensus 556 ~l~~~l~~~~~~~~~~KvIIF~~------~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll 626 (723)
.+.+.|+...... +|+||+. +=..-..+.++|...|+++..++=...++.+..+........-+.|+|
T Consensus 23 ~~~~~v~~~i~~~---~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~VfI 96 (135)
T 2wci_A 23 TTIEKIQRQIAEN---PILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQLWV 96 (135)
T ss_dssp HHHHHHHHHHHHC---SEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEE
T ss_pred HHHHHHHHHhccC---CEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcCEEEE
Confidence 3445555554333 8999987 334577888999999999888876655555555444443332345443
No 263
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=44.35 E-value=14 Score=39.04 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=19.3
Q ss_pred CcccCCCCCcHHHHHHHHHhcCcc
Q 004925 52 GILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
.+++-..|+|||.++..++.++..
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHHHH
Confidence 456778999999999888876654
No 264
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=44.22 E-value=7.9 Score=39.11 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=20.2
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcC
Q 004925 50 RGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
++.+|..++|+|||..+-++....
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 688999999999999987776643
No 265
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=44.18 E-value=8.4 Score=36.52 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=21.4
Q ss_pred CCcccCCCCCcHHHHHHHHHhcCccc
Q 004925 51 GGILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 51 g~iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
+.++....|+|||.+|+.++......
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35788999999999999888776654
No 266
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=44.00 E-value=1.3e+02 Score=24.47 Aligned_cols=23 Identities=9% Similarity=-0.139 Sum_probs=12.8
Q ss_pred EECCCCChhhHHHHHHhhhhcCC
Q 004925 646 LMDPWWNPAVEQQAQDRIHRIGQ 668 (723)
Q Consensus 646 ~~d~~wn~~~~~Q~iGRi~R~Gq 668 (723)
++.-|.++..+.+++.++...++
T Consensus 105 ~l~KP~~~~~l~~~l~~~~~~~~ 127 (135)
T 3eqz_A 105 TFTKPINTEVLTCFLTSLSNRQA 127 (135)
T ss_dssp EEESSCCHHHHHHHHHHHSCCC-
T ss_pred eeCCCCCHHHHHHHHHHHHhhcc
Confidence 34455666666666666655433
No 267
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=43.62 E-value=1.1e+02 Score=29.23 Aligned_cols=93 Identities=11% Similarity=0.048 Sum_probs=57.0
Q ss_pred CcchHHHH-HHHHHHHHHhh----cCCceEEEEcccHhHHHHHHHHHHh----CCCeEEEeecCCCHHHHHHHHHhhcCC
Q 004925 549 QSSTKIEA-LREEIRFMVER----DGSAKGIVFSQFTSFLDLINYSLHK----SGVNCVQLVGSMSIPARDAAINRFTED 619 (723)
Q Consensus 549 ~~s~Kl~~-l~~~l~~~~~~----~~~~KvIIF~~~~~~~~~l~~~L~~----~g~~~~~i~g~~~~~~r~~~i~~F~~~ 619 (723)
.+++|--. ++-++..+... ..+.++||.+..+..+..+.+.++. .+..+..+.|+.+.......+ ..
T Consensus 100 TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~- 175 (262)
T 3ly5_A 100 TGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GN- 175 (262)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HH-
T ss_pred CCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cC-
Confidence 66778765 44444443321 2456899999999877766666655 477888899988755443332 22
Q ss_pred CCceEEEEecCCC------cccccccccCEEEE
Q 004925 620 PDCKIFLMSLKAG------GVALNLTVASHVFL 646 (723)
Q Consensus 620 ~~~~vll~s~~~~------~eGlnL~~a~~vI~ 646 (723)
++.|++++.... ..++++...+.+|+
T Consensus 176 -~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 176 -GINIIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp -CCSEEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred -CCCEEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 356677664322 12456677776665
No 268
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=43.47 E-value=25 Score=34.89 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=21.1
Q ss_pred CCCCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 47 SAIRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 47 ~~~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
....+.+|.-++|+|||..|-++....
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 333778999999999999987766644
No 269
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=43.13 E-value=44 Score=38.36 Aligned_cols=94 Identities=12% Similarity=0.053 Sum_probs=56.2
Q ss_pred cCcchHHHHHHHHHHHHHhhcC---CceEEEEcccHhHHHHHHHHHHh----CCCeEEEeecCCCHHHHHHHHHhhcCCC
Q 004925 548 FQSSTKIEALREEIRFMVERDG---SAKGIVFSQFTSFLDLINYSLHK----SGVNCVQLVGSMSIPARDAAINRFTEDP 620 (723)
Q Consensus 548 ~~~s~Kl~~l~~~l~~~~~~~~---~~KvIIF~~~~~~~~~l~~~L~~----~g~~~~~i~g~~~~~~r~~~i~~F~~~~ 620 (723)
..+++|.-...-.+...+...+ +.++||.+.....+..+...++. .++.+..++|+.+...+...+. .
T Consensus 271 ~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~-- 345 (797)
T 4a2q_A 271 PTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI---E-- 345 (797)
T ss_dssp CTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH---H--
T ss_pred CCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh---C--
Confidence 3577888776666666654444 67999999998776665555544 4999999999986544322221 1
Q ss_pred CceEEEEecCCCccc-----c-cccccCEEEE
Q 004925 621 DCKIFLMSLKAGGVA-----L-NLTVASHVFL 646 (723)
Q Consensus 621 ~~~vll~s~~~~~eG-----l-nL~~a~~vI~ 646 (723)
++.|+|+|+..+..- + .+...+.||+
T Consensus 346 ~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 377 (797)
T 4a2q_A 346 DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (797)
T ss_dssp TCSEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred CCCEEEEchHHHHHHHHhccccccccCCEEEE
Confidence 455777776544322 2 3445556554
No 270
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=42.61 E-value=37 Score=36.69 Aligned_cols=93 Identities=12% Similarity=0.067 Sum_probs=55.4
Q ss_pred CcchHHHHHHHHHHHHHhhcC---CceEEEEcccHhHHHHHHHHHHh----CCCeEEEeecCCCHHHHHHHHHhhcCCCC
Q 004925 549 QSSTKIEALREEIRFMVERDG---SAKGIVFSQFTSFLDLINYSLHK----SGVNCVQLVGSMSIPARDAAINRFTEDPD 621 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~---~~KvIIF~~~~~~~~~l~~~L~~----~g~~~~~i~g~~~~~~r~~~i~~F~~~~~ 621 (723)
.+++|.-...-.+.+.+...+ +.++||.+..+..+..+.+.++. .++.+..++|+.+...+...+. . .
T Consensus 31 tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~--~ 105 (556)
T 4a2p_A 31 TGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI---E--D 105 (556)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH---H--H
T ss_pred CCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh---C--C
Confidence 677888776666655554444 67899999998776655555544 4899999999986544322221 1 2
Q ss_pred ceEEEEecCCCccc-----c-cccccCEEEE
Q 004925 622 CKIFLMSLKAGGVA-----L-NLTVASHVFL 646 (723)
Q Consensus 622 ~~vll~s~~~~~eG-----l-nL~~a~~vI~ 646 (723)
+.|+|+++..+..- + ++...+++|+
T Consensus 106 ~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 136 (556)
T 4a2p_A 106 SDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 136 (556)
T ss_dssp CSEEEECHHHHHHHHHSSSCCCSTTCSEEEE
T ss_pred CCEEEECHHHHHHHHHhCcccccccCCEEEE
Confidence 45667666554421 2 4555666665
No 271
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=42.58 E-value=21 Score=35.21 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=19.9
Q ss_pred CCCCcccCCCCCcHHHHHHHHHhc
Q 004925 49 IRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 49 ~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
..+.+|.-++|+|||..|-++...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 367899999999999998776654
No 272
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=42.50 E-value=25 Score=28.58 Aligned_cols=37 Identities=19% Similarity=0.154 Sum_probs=31.9
Q ss_pred cCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCC
Q 004925 568 DGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSM 604 (723)
Q Consensus 568 ~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~ 604 (723)
..+.++|+||..-.........|...|+.+..+.|++
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~ 89 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGI 89 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcH
Confidence 3557899999887778889999999999999999986
No 273
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=41.78 E-value=21 Score=28.56 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=31.3
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCC
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSM 604 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~ 604 (723)
++.++|+||..-.........|...|+.+..+.|++
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 456899999988788899999999999988898876
No 274
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=41.66 E-value=98 Score=25.67 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=16.4
Q ss_pred ceEEEEcccHhHHHHHHHHHHhCCCeEE
Q 004925 571 AKGIVFSQFTSFLDLINYSLHKSGVNCV 598 (723)
Q Consensus 571 ~KvIIF~~~~~~~~~l~~~L~~~g~~~~ 598 (723)
.+++|..........+...|...|+.+.
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~ 32 (142)
T 2qxy_A 5 PTVMVVDESRITFLAVKNALEKDGFNVI 32 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHGGGTCEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEE
Confidence 3566666666666666666665555544
No 275
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=41.23 E-value=22 Score=33.23 Aligned_cols=42 Identities=21% Similarity=0.077 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 31 LRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 31 ~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
+..++..+...+...... +..+|.-+.|+|||..+-.++...
T Consensus 28 ~~~~~~~l~~~l~~~~~~-~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIH-HAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp CHHHHHHHHHHHHHTCCC-SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHh
Confidence 455556665555442221 346889999999999887766543
No 276
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=41.17 E-value=18 Score=35.19 Aligned_cols=24 Identities=25% Similarity=0.022 Sum_probs=20.3
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcC
Q 004925 50 RGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
.+.+|..++|+|||..+.+++...
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhh
Confidence 457889999999999999888753
No 277
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=40.90 E-value=1.2e+02 Score=24.90 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=14.0
Q ss_pred ceEEEEcccHhHHHHHHHHHHh-CCCe
Q 004925 571 AKGIVFSQFTSFLDLINYSLHK-SGVN 596 (723)
Q Consensus 571 ~KvIIF~~~~~~~~~l~~~L~~-~g~~ 596 (723)
.+++|..........+...|.. .|+.
T Consensus 9 ~~iLivdd~~~~~~~l~~~L~~~~~~~ 35 (143)
T 3cnb_A 9 FSILIIEDDKEFADMLTQFLENLFPYA 35 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHCTTC
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCcc
Confidence 3555555555555555555555 4554
No 278
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=40.66 E-value=12 Score=42.87 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=21.5
Q ss_pred CCCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 48 AIRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 48 ~~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
..+|.||.-++|+|||+.|-+++...
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTT
T ss_pred CCceEEEecCCCCCchHHHHHHHHHh
Confidence 34789999999999999987777643
No 279
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=40.63 E-value=17 Score=36.52 Aligned_cols=44 Identities=5% Similarity=-0.230 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHH-hc-cCCCCCCcccCCCCCcHHHHHHHHHhcCc
Q 004925 31 LRYQKEWLAWALK-QE-ESAIRGGILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 31 ~p~Q~~~~~~~~~-~~-~~~~~g~iLad~~GlGKT~~al~~i~~~~ 74 (723)
|.-|...+...+. .. ....++.+|.-++|+|||.++-.++..+.
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4455555543332 22 23335567899999999999987776654
No 280
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=40.02 E-value=64 Score=26.98 Aligned_cols=45 Identities=9% Similarity=-0.161 Sum_probs=36.7
Q ss_pred EEEEcccHhHH-------HHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhc
Q 004925 573 GIVFSQFTSFL-------DLINYSLHKSGVNCVQLVGSMSIPARDAAINRFT 617 (723)
Q Consensus 573 vIIF~~~~~~~-------~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~ 617 (723)
|.||+...... ..+..+|...|+++..++=++..+.|...+++..
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 56776654433 6899999999999999999888999999998883
No 281
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=39.62 E-value=16 Score=35.56 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=21.0
Q ss_pred CCCCCCcccCCCCCcHHHHHHHHHhc
Q 004925 47 SAIRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 47 ~~~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
...++.+|.-++|+|||..|-+++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34467889999999999999777764
No 282
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.60 E-value=64 Score=24.30 Aligned_cols=55 Identities=18% Similarity=0.435 Sum_probs=42.8
Q ss_pred ccccccccccccccCCCCCcc-cccCCccchhhhhhhhcCcCCCCCCCCCCCcccc
Q 004925 461 DAEHVQQVCGLCNDLADDPVV-TNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 515 (723)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (723)
...+.-..|.+|......... ..|+|.|=..|+..-..+.....||.|+......
T Consensus 10 ~y~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 10 TYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp CCSSSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred hccCCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 344556779999988775432 3789999999999888887778999999887644
No 283
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=39.24 E-value=21 Score=28.66 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=31.1
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCC
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSM 604 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~ 604 (723)
++.++||||..-.........|...|+.+..+.|++
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 456899999988778889999999999989898876
No 284
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=38.97 E-value=12 Score=37.58 Aligned_cols=56 Identities=23% Similarity=0.462 Sum_probs=40.8
Q ss_pred ccccccccccccCCCC-Ccc-------cccCCccchhhhhhhhcCc---------CCCCCCCCCCCccccccc
Q 004925 463 EHVQQVCGLCNDLADD-PVV-------TNCGHAFCKACLFDSSASK---------FVAKCPTCSIPLTVDFTA 518 (723)
Q Consensus 463 ~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 518 (723)
++....|.+|.....+ +.+ ..|+|.|=..|+.+=..+. ....||.|+.++...+.+
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~~ 377 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFAA 377 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHHH
Confidence 3567889999977765 222 4799999999997755443 236899999998865543
No 285
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=38.92 E-value=59 Score=38.61 Aligned_cols=93 Identities=12% Similarity=0.075 Sum_probs=64.1
Q ss_pred CcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHh----CCC----eEEEeecCCCHHHHHHHHHhhcCCC
Q 004925 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK----SGV----NCVQLVGSMSIPARDAAINRFTEDP 620 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~----~g~----~~~~i~g~~~~~~r~~~i~~F~~~~ 620 (723)
.+|+|--..+-.+.... ..+.++||.+..+..+..+.+.++. .++ .+..++|+++..++....+.+..
T Consensus 80 TGSGKTl~~lp~l~~~~--~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-- 155 (1054)
T 1gku_B 80 TGVGKTSFGLAMSLFLA--LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-- 155 (1054)
T ss_dssp BTSCSHHHHHHHHHHHH--TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--
T ss_pred CCCCHHHHHHHHHHHHh--hcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--
Confidence 67788866666666553 3557899999999877666666654 367 89999999998887777777765
Q ss_pred CceEEEEecCCCccccc-ccccCEEEE
Q 004925 621 DCKIFLMSLKAGGVALN-LTVASHVFL 646 (723)
Q Consensus 621 ~~~vll~s~~~~~eGln-L~~a~~vI~ 646 (723)
+.|++++...+-.-+. |...+.+|+
T Consensus 156 -~~IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 156 -FKIVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp -CSEEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred -CCEEEEcHHHHHHHHHHhccCCEEEE
Confidence 6778877654443333 445555554
No 286
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=38.80 E-value=26 Score=35.15 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhc---cCCCCCCcccCCCCCcHHHHHHHHHhc
Q 004925 32 RYQKEWLAWALKQE---ESAIRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 32 p~Q~~~~~~~~~~~---~~~~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
......+..++... .....+.+|.-++|+|||..|-++...
T Consensus 35 ~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 35 ESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34444444444332 233367899999999999998777554
No 287
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=38.45 E-value=1.2e+02 Score=25.25 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=19.8
Q ss_pred CceEEEEcccHhHHHHHHHHHHhCCCe
Q 004925 570 SAKGIVFSQFTSFLDLINYSLHKSGVN 596 (723)
Q Consensus 570 ~~KvIIF~~~~~~~~~l~~~L~~~g~~ 596 (723)
..+++|..........+...|...|+.
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~ 31 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIH 31 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCC
Confidence 356777777777777777777777766
No 288
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=38.43 E-value=21 Score=36.40 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=20.4
Q ss_pred CCCCcccCCCCCcHHHHHHHHHhc
Q 004925 49 IRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 49 ~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
.++.+|.-++|+|||..|-+++..
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 477899999999999999777654
No 289
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=38.29 E-value=1.2e+02 Score=24.39 Aligned_cols=28 Identities=14% Similarity=0.419 Sum_probs=18.2
Q ss_pred eEEEEcccHhHHHHHHHHHHhCCCeEEE
Q 004925 572 KGIVFSQFTSFLDLINYSLHKSGVNCVQ 599 (723)
Q Consensus 572 KvIIF~~~~~~~~~l~~~L~~~g~~~~~ 599 (723)
+++|.-..+.....+...|+..|+.+..
T Consensus 4 ~ILivdd~~~~~~~l~~~l~~~g~~v~~ 31 (122)
T 3gl9_A 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIE 31 (122)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEE
Confidence 5666666666666677777666665543
No 290
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=38.17 E-value=1.2e+02 Score=22.60 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCC
Q 004925 555 EALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDP 620 (723)
Q Consensus 555 ~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~ 620 (723)
+.+...+.+..+...+-||+|.......++.....-++-.+.+.. ..-+++.+-..-|+.|.+.+
T Consensus 36 delkkyleefrkesqnikvlilvsndeeldkakelaqkmeidvrt-rkvtspdeakrwikefseeg 100 (110)
T 2kpo_A 36 DELKKYLEEFRKESQNIKVLILVSNDEELDKAKELAQKMEIDVRT-RKVTSPDEAKRWIKEFSEEG 100 (110)
T ss_dssp HHHHHHHHHHTSSTTSEEEEEEESSHHHHHHHHHHHHHTTCCEEE-EECSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhccCeEEEEEEcChHHHHHHHHHHHhhceeeee-eecCChHHHHHHHHHHhhcc
Confidence 556677777766778899999999999888877777776666443 34456788888899998653
No 291
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=38.06 E-value=1.3e+02 Score=23.88 Aligned_cols=27 Identities=4% Similarity=0.009 Sum_probs=16.1
Q ss_pred eEEEEcccHhHHHHHHHHHHhCCCeEE
Q 004925 572 KGIVFSQFTSFLDLINYSLHKSGVNCV 598 (723)
Q Consensus 572 KvIIF~~~~~~~~~l~~~L~~~g~~~~ 598 (723)
+++|..........+...|...|+.+.
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~~~v~ 30 (122)
T 1zgz_A 4 HIVIVEDEPVTQARLQSYFTQEGYTVS 30 (122)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCeEE
Confidence 556666666666666666665555543
No 292
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=37.77 E-value=80 Score=26.12 Aligned_cols=62 Identities=8% Similarity=0.044 Sum_probs=39.1
Q ss_pred CceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCc---ccccc
Q 004925 570 SAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGG---VALNL 638 (723)
Q Consensus 570 ~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~---eGlnL 638 (723)
..+++|..........+...|...|+.+..... -...+..+... .+.++|+.....+ .|+++
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~------~~~a~~~l~~~-~~dlvi~D~~l~~~~~~g~~~ 70 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFAS------AESFMRQQISD-DAIGMIIEAHLEDKKDSGIEL 70 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEESS------HHHHTTSCCCT-TEEEEEEETTGGGBTTHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCC------HHHHHHHHhcc-CCCEEEEeCcCCCCCccHHHH
Confidence 358888888888888999999888887664432 12344444433 5667776655433 45553
No 293
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=37.51 E-value=1.5e+02 Score=23.49 Aligned_cols=65 Identities=14% Similarity=0.112 Sum_probs=39.8
Q ss_pred HHHHHHHHhhcCCceEEEEcc------cHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEE
Q 004925 558 REEIRFMVERDGSAKGIVFSQ------FTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIF 625 (723)
Q Consensus 558 ~~~l~~~~~~~~~~KvIIF~~------~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vl 625 (723)
.+.+..... ..+++||+. +=..-..+..+|...++++..++=...+..+..+...+....-+.++
T Consensus 7 ~~~~~~~i~---~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~ 77 (105)
T 2yan_A 7 EERLKVLTN---KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLY 77 (105)
T ss_dssp HHHHHHHHT---SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHHHHhc---cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 344444432 237999986 22456788888888889888877665555555555555433334443
No 294
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=37.06 E-value=1.3e+02 Score=24.57 Aligned_cols=31 Identities=13% Similarity=0.124 Sum_probs=20.1
Q ss_pred CceEEEEcccHhHHHHHHHHHHhCCCeEEEe
Q 004925 570 SAKGIVFSQFTSFLDLINYSLHKSGVNCVQL 600 (723)
Q Consensus 570 ~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i 600 (723)
..+++|..........+...|...|+.+...
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~ 37 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGA 37 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEe
Confidence 3466777776777777777777666665443
No 295
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=36.98 E-value=23 Score=33.00 Aligned_cols=93 Identities=12% Similarity=0.091 Sum_probs=55.5
Q ss_pred CcchHHHHH-HHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhC--------CCeEEEeecCCCHHHHHHHHHhhcCC
Q 004925 549 QSSTKIEAL-REEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS--------GVNCVQLVGSMSIPARDAAINRFTED 619 (723)
Q Consensus 549 ~~s~Kl~~l-~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~--------g~~~~~i~g~~~~~~r~~~i~~F~~~ 619 (723)
.+++|--.. +-++..+.....+.++||.+..+..+..+.+.++.. ++.+..+.|+.+..+ ..+.+.
T Consensus 50 TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~-- 124 (219)
T 1q0u_A 50 TGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQK---ALEKLN-- 124 (219)
T ss_dssp SSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHH---TTCCCS--
T ss_pred CCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHH---HHHHcC--
Confidence 677888764 334443322234568999999988777666665543 678888888864332 122222
Q ss_pred CCceEEEEecCCCcc-----cccccccCEEEE
Q 004925 620 PDCKIFLMSLKAGGV-----ALNLTVASHVFL 646 (723)
Q Consensus 620 ~~~~vll~s~~~~~e-----GlnL~~a~~vI~ 646 (723)
.++.|++++...... .+++...+.+|+
T Consensus 125 ~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 125 VQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp SCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred CCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 256677777543322 345666666655
No 296
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=36.93 E-value=13 Score=37.30 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=18.4
Q ss_pred ccCCCCCcHHHHHHHHHhcCcccc
Q 004925 54 LADEMGMGKTIQAIALVLAKREIR 77 (723)
Q Consensus 54 Lad~~GlGKT~~al~~i~~~~~~~ 77 (723)
++--=|.|||.+++.+..++...+
T Consensus 53 IaGKGGVGKTTtavNLA~aLA~~G 76 (314)
T 3fwy_A 53 VYGKGGIGKSTTSSNLSAAFSILG 76 (314)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTT
T ss_pred EECCCccCHHHHHHHHHHHHHHCC
Confidence 345678999999988888776654
No 297
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=36.83 E-value=26 Score=28.39 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=30.2
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCC
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSM 604 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~ 604 (723)
++.++||||..-......+..|...|+....+.|++
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 456899999887777788899999999988888875
No 298
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=36.69 E-value=1e+02 Score=27.83 Aligned_cols=94 Identities=13% Similarity=0.106 Sum_probs=58.8
Q ss_pred CcchHHHHHHHHHHHHHh----hcCCceEEEEcccHhHHHHHHHHHHhC--CCeEEEeecCCCHHHHHHHHHhhcCCCCc
Q 004925 549 QSSTKIEALREEIRFMVE----RDGSAKGIVFSQFTSFLDLINYSLHKS--GVNCVQLVGSMSIPARDAAINRFTEDPDC 622 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~----~~~~~KvIIF~~~~~~~~~l~~~L~~~--g~~~~~i~g~~~~~~r~~~i~~F~~~~~~ 622 (723)
.+++|.-...-.+...+. ...+.++||.+..+..+..+.+.+... ++.+..+.|+.+.......+. . ++
T Consensus 47 TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~ 121 (207)
T 2gxq_A 47 TGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL---R--GA 121 (207)
T ss_dssp TTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH---H--CC
T ss_pred CCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh---C--CC
Confidence 677888764443333321 134568999999998888888888765 467888888877544433332 1 45
Q ss_pred eEEEEecCCCcc-----cccccccCEEEEE
Q 004925 623 KIFLMSLKAGGV-----ALNLTVASHVFLM 647 (723)
Q Consensus 623 ~vll~s~~~~~e-----GlnL~~a~~vI~~ 647 (723)
.|++++...... .+++...+.+|+=
T Consensus 122 ~i~v~T~~~l~~~~~~~~~~~~~~~~iViD 151 (207)
T 2gxq_A 122 DAVVATPGRALDYLRQGVLDLSRVEVAVLD 151 (207)
T ss_dssp SEEEECHHHHHHHHHHTSSCCTTCSEEEEE
T ss_pred CEEEECHHHHHHHHHcCCcchhhceEEEEE
Confidence 667777543321 3456666766653
No 299
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=36.66 E-value=23 Score=36.13 Aligned_cols=43 Identities=21% Similarity=0.095 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHhc--cCCCCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 31 LRYQKEWLAWALKQE--ESAIRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 31 ~p~Q~~~~~~~~~~~--~~~~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
+..+...+...+... ....++.+|..+.|+|||..+-.++...
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 455555555444332 2333678899999999999987776544
No 300
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=36.63 E-value=15 Score=34.41 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=18.7
Q ss_pred cccCCCCCcHHHHHHHHHhcCccc
Q 004925 53 ILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 53 iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
|..-..|.|||.+++.++..+...
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~ 29 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAA 29 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC
Confidence 445568999999999888876554
No 301
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=36.32 E-value=91 Score=31.13 Aligned_cols=77 Identities=10% Similarity=0.168 Sum_probs=51.2
Q ss_pred CcchHHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHh----CCCeEEEeecCCCHHHHHHHHHhhcCCCCceE
Q 004925 549 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK----SGVNCVQLVGSMSIPARDAAINRFTEDPDCKI 624 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~----~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~v 624 (723)
.+++|--...-.+...+...++.++||.+..+..+..+.+.+.. .++.+..+.|+....+....+. ...+
T Consensus 53 TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~i 126 (367)
T 1hv8_A 53 TGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK------NANI 126 (367)
T ss_dssp SSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH------TCSE
T ss_pred CCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC------CCCE
Confidence 67889877666555554445677999999998877766666655 4778888998887554333322 3445
Q ss_pred EEEecCC
Q 004925 625 FLMSLKA 631 (723)
Q Consensus 625 ll~s~~~ 631 (723)
++++...
T Consensus 127 iv~T~~~ 133 (367)
T 1hv8_A 127 VVGTPGR 133 (367)
T ss_dssp EEECHHH
T ss_pred EEecHHH
Confidence 6655443
No 302
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=36.16 E-value=1.6e+02 Score=23.64 Aligned_cols=29 Identities=7% Similarity=0.035 Sum_probs=19.5
Q ss_pred ceEEEEcccHhHHHHHHHHHHhCCCeEEE
Q 004925 571 AKGIVFSQFTSFLDLINYSLHKSGVNCVQ 599 (723)
Q Consensus 571 ~KvIIF~~~~~~~~~l~~~L~~~g~~~~~ 599 (723)
.+++|..........+...|...|+.+..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~ 32 (126)
T 1dbw_A 4 YTVHIVDDEEPVRKSLAFMLTMNGFAVKM 32 (126)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCcEEEE
Confidence 46777777777777777777766665543
No 303
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=36.03 E-value=1e+02 Score=32.19 Aligned_cols=93 Identities=16% Similarity=0.136 Sum_probs=57.6
Q ss_pred CcchHHHH-HHHHHHHHHhhc-----CCceEEEEcccHhHHHHHHHHHHhC----CCeEEEeecCCCHHHHHHHHHhhcC
Q 004925 549 QSSTKIEA-LREEIRFMVERD-----GSAKGIVFSQFTSFLDLINYSLHKS----GVNCVQLVGSMSIPARDAAINRFTE 618 (723)
Q Consensus 549 ~~s~Kl~~-l~~~l~~~~~~~-----~~~KvIIF~~~~~~~~~l~~~L~~~----g~~~~~i~g~~~~~~r~~~i~~F~~ 618 (723)
.+|+|-.+ ++-++..+.... .+.++||.+..+..+..+.+.+++. ++.+..++|+.+...+...+.
T Consensus 102 TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~---- 177 (434)
T 2db3_A 102 TGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECIT---- 177 (434)
T ss_dssp TTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHT----
T ss_pred CCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhh----
Confidence 67788764 455555554322 2458999999998887777776653 678888999987655433332
Q ss_pred CCCceEEEEecCCCcc-----cccccccCEEEE
Q 004925 619 DPDCKIFLMSLKAGGV-----ALNLTVASHVFL 646 (723)
Q Consensus 619 ~~~~~vll~s~~~~~e-----GlnL~~a~~vI~ 646 (723)
.++.|++++...+-. .+++...+++|+
T Consensus 178 -~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVl 209 (434)
T 2db3_A 178 -RGCHVVIATPGRLLDFVDRTFITFEDTRFVVL 209 (434)
T ss_dssp -TCCSEEEECHHHHHHHHHTTSCCCTTCCEEEE
T ss_pred -cCCCEEEEChHHHHHHHHhCCcccccCCeEEE
Confidence 245666666543311 234555555554
No 304
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=35.99 E-value=93 Score=28.11 Aligned_cols=93 Identities=8% Similarity=0.042 Sum_probs=56.5
Q ss_pred CcchHHHHHH-HHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhC-----CCeEEEeecCCCHHHHHHHHHhhcCCCCc
Q 004925 549 QSSTKIEALR-EEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS-----GVNCVQLVGSMSIPARDAAINRFTEDPDC 622 (723)
Q Consensus 549 ~~s~Kl~~l~-~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~-----g~~~~~i~g~~~~~~r~~~i~~F~~~~~~ 622 (723)
.+++|--... -++........+.++||.+..+..+..+.+.+... ++.+..+.|+.+..+.. ..+. .++
T Consensus 49 TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~--~~~ 123 (206)
T 1vec_A 49 NGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI---MRLD--DTV 123 (206)
T ss_dssp SSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHH---HHTT--SCC
T ss_pred CCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHH---HhcC--CCC
Confidence 3466775443 34433322234568999999998877776666543 67888899988754432 2232 356
Q ss_pred eEEEEecCCCcc-----cccccccCEEEE
Q 004925 623 KIFLMSLKAGGV-----ALNLTVASHVFL 646 (723)
Q Consensus 623 ~vll~s~~~~~e-----GlnL~~a~~vI~ 646 (723)
.+++++...... .+++...+.+|+
T Consensus 124 ~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 152 (206)
T 1vec_A 124 HVVIATPGRILDLIKKGVAKVDHVQMIVL 152 (206)
T ss_dssp SEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred CEEEeCHHHHHHHHHcCCcCcccCCEEEE
Confidence 777877654321 234566677665
No 305
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=35.96 E-value=18 Score=34.27 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=18.1
Q ss_pred cccCCCCCcHHHHHHHHHhcCccc
Q 004925 53 ILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 53 iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
+..---|.|||.+++.++..+...
T Consensus 9 v~s~kGGvGKTt~a~~LA~~la~~ 32 (245)
T 3ea0_A 9 FVSAKGGDGGSCIAANFAFALSQE 32 (245)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTTS
T ss_pred EECCCCCcchHHHHHHHHHHHHhC
Confidence 344567999999998888776554
No 306
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=35.83 E-value=1.6e+02 Score=27.64 Aligned_cols=95 Identities=14% Similarity=0.144 Sum_probs=57.6
Q ss_pred CcchHHHH-HHHHHHHHHhh---------cCCceEEEEcccHhHHHHHHHHHHh----CCCeEEEeecCCCHHHHHHHHH
Q 004925 549 QSSTKIEA-LREEIRFMVER---------DGSAKGIVFSQFTSFLDLINYSLHK----SGVNCVQLVGSMSIPARDAAIN 614 (723)
Q Consensus 549 ~~s~Kl~~-l~~~l~~~~~~---------~~~~KvIIF~~~~~~~~~l~~~L~~----~g~~~~~i~g~~~~~~r~~~i~ 614 (723)
.+++|--. ++-++..+... ..+.++||.+..+..+..+.+.++. .++.+..+.|+.+..+....+
T Consensus 69 TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~- 147 (253)
T 1wrb_A 69 TGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV- 147 (253)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH-
T ss_pred CCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh-
Confidence 56778765 33444443321 1235899999998877766666654 367888888887654433322
Q ss_pred hhcCCCCceEEEEecCCCcc-----cccccccCEEEEEC
Q 004925 615 RFTEDPDCKIFLMSLKAGGV-----ALNLTVASHVFLMD 648 (723)
Q Consensus 615 ~F~~~~~~~vll~s~~~~~e-----GlnL~~a~~vI~~d 648 (723)
. .++.|+|++...+-. .+++...+++|+=+
T Consensus 148 --~--~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDE 182 (253)
T 1wrb_A 148 --Q--MGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDE 182 (253)
T ss_dssp --S--SCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEET
T ss_pred --C--CCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeC
Confidence 2 256778877655432 34566667766533
No 307
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=35.81 E-value=1e+02 Score=24.72 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=18.2
Q ss_pred eEEEEcccHhHHHHHHHHHHhCCCeEEE
Q 004925 572 KGIVFSQFTSFLDLINYSLHKSGVNCVQ 599 (723)
Q Consensus 572 KvIIF~~~~~~~~~l~~~L~~~g~~~~~ 599 (723)
+++|..........+...|...|+.+..
T Consensus 7 ~ilivdd~~~~~~~l~~~L~~~g~~v~~ 34 (127)
T 2gkg_A 7 KILIVESDTALSATLRSALEGRGFTVDE 34 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEE
Confidence 5666666666666777777666665543
No 308
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=35.74 E-value=11 Score=40.50 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=19.8
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcC
Q 004925 50 RGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
++.+|..++|+|||..|-++....
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred CeeEeecCchHHHHHHHHHHHHHH
Confidence 678999999999999886666543
No 309
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=35.16 E-value=54 Score=35.36 Aligned_cols=61 Identities=11% Similarity=0.123 Sum_probs=50.3
Q ss_pred ceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 004925 571 AKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 632 (723)
Q Consensus 571 ~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~ 632 (723)
.++||.+..+..+....+.|...|+++..++|+.+..++.........+ .+.++++++..+
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~-~~~ilv~Tpe~l 126 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTG-QIRLLYIAPERL 126 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHT-CCSEEEECHHHH
T ss_pred CCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CCCEEEECHHHH
Confidence 4899999999999999999999999999999999988887777777654 566777665443
No 310
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=35.05 E-value=30 Score=27.11 Aligned_cols=35 Identities=11% Similarity=0.183 Sum_probs=30.0
Q ss_pred ceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCC
Q 004925 571 AKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMS 605 (723)
Q Consensus 571 ~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~ 605 (723)
.++||||..-.........|...|+++..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 68999999887788889999999999778888763
No 311
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=34.63 E-value=28 Score=34.20 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=20.1
Q ss_pred CCCCcccCCCCCcHHHHHHHHHhc
Q 004925 49 IRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 49 ~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
.++.+|.-++|+|||..|-+++..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 367899999999999998777654
No 312
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=34.49 E-value=1.1e+02 Score=25.91 Aligned_cols=61 Identities=11% Similarity=0.205 Sum_probs=35.6
Q ss_pred CceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCc-cccc
Q 004925 570 SAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGG-VALN 637 (723)
Q Consensus 570 ~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~-eGln 637 (723)
+.+++|..........+...|...|+.+..... -...+..+... .+.++|+.....+ .|+.
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~------~~~a~~~l~~~-~~dliild~~l~~~~g~~ 64 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFAS------ATEALAGLSAD-FAGIVISDIRMPGMDGLA 64 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESC------HHHHHHTCCTT-CCSEEEEESCCSSSCHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECC------HHHHHHHHHhC-CCCEEEEeCCCCCCCHHH
Confidence 347788888888888888888877776554322 12344444433 4556666654432 3444
No 313
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=34.48 E-value=1.2e+02 Score=25.71 Aligned_cols=63 Identities=6% Similarity=0.045 Sum_probs=38.3
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCC-cccccc
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG-GVALNL 638 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~-~eGlnL 638 (723)
.+.+++|..........+...|+..|+.+..... .. ..+...... .+.++|+..... ..|+++
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~---~~---~al~~l~~~-~~dlii~D~~l~~~~g~~~ 69 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRN---GR---EAVRFLSLT-RPDLIISDVLMPEMDGYAL 69 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESS---HH---HHHHHHTTC-CCSEEEEESCCSSSCHHHH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCC---HH---HHHHHHHhC-CCCEEEEeCCCCCCCHHHH
Confidence 3457888888888888888888888877655432 12 233344332 455666665432 245553
No 314
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=34.00 E-value=19 Score=33.26 Aligned_cols=22 Identities=18% Similarity=0.463 Sum_probs=17.4
Q ss_pred CcccCCCCCcHHHHHHHHHhcC
Q 004925 52 GILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~ 73 (723)
.++.-.+|+|||..|+..+...
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 3567889999999998876554
No 315
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=33.31 E-value=34 Score=27.65 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=31.0
Q ss_pred cCCceEEEEcccHhHHHHHHHHHHhCCCe-EEEeecCC
Q 004925 568 DGSAKGIVFSQFTSFLDLINYSLHKSGVN-CVQLVGSM 604 (723)
Q Consensus 568 ~~~~KvIIF~~~~~~~~~l~~~L~~~g~~-~~~i~g~~ 604 (723)
..+..+||||..-.........|...|+. +..+.|++
T Consensus 50 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 50 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 35568999999887888899999999996 78888876
No 316
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=33.23 E-value=26 Score=33.14 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=29.7
Q ss_pred CcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhhHHHHHHHHH
Q 004925 52 GILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEIN 116 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~~qW~~ei~ 116 (723)
.+|+-++|+|||..++.++....... ++++++.-..-..+....+.
T Consensus 26 ~~i~G~~GsGKTtl~~~~~~~~~~~~-------------------~~v~~~~~e~~~~~~~~~~~ 71 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFLWNGLKMG-------------------EPGIYVALEEHPVQVRQNMA 71 (247)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTT-------------------CCEEEEESSSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC-------------------CeEEEEEccCCHHHHHHHHH
Confidence 47788999999999887766543321 46777766544444444443
No 317
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=33.21 E-value=1.9e+02 Score=23.26 Aligned_cols=26 Identities=12% Similarity=0.037 Sum_probs=12.9
Q ss_pred eEEEEcccHhHHHHHHHHHHhCCCeE
Q 004925 572 KGIVFSQFTSFLDLINYSLHKSGVNC 597 (723)
Q Consensus 572 KvIIF~~~~~~~~~l~~~L~~~g~~~ 597 (723)
+++|..........+...|...|+.+
T Consensus 7 ~ilivdd~~~~~~~l~~~L~~~g~~v 32 (132)
T 2rdm_A 7 TILLADDEAILLLDFESTLTDAGFLV 32 (132)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHcCCEE
Confidence 45555555555555555555444443
No 318
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=33.15 E-value=32 Score=35.06 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=20.4
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcC
Q 004925 50 RGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
++.+|.-++|+|||..|-++....
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 678999999999999997777654
No 319
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=33.08 E-value=34 Score=41.52 Aligned_cols=59 Identities=15% Similarity=0.116 Sum_probs=39.6
Q ss_pred ccCChHHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEech
Q 004925 27 ITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV 105 (723)
Q Consensus 27 ~~~L~p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~ 105 (723)
...|-|-|..++..- . ++.++....|+|||.+.+.-+...+..+.. ..+...+|+|++.
T Consensus 8 ~~~~t~eQ~~~i~~~------~-~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~-------------~~~~~~il~~Tft 66 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVST------G-QDILVAAAAGSGKTAVLVERMIRKITAEEN-------------PIDVDRLLVVTFT 66 (1232)
T ss_dssp --CCCHHHHHHHHCC------S-SCEEEEECTTCCHHHHHHHHHHHHHSCSSS-------------CCCGGGEEEECSS
T ss_pred CCCCCHHHHHHHhCC------C-CCEEEEecCCCcHHHHHHHHHHHHHhcCCC-------------CCCccceEEEecc
Confidence 347889999987641 2 677888999999999987765554443210 0012689999995
No 320
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=32.93 E-value=39 Score=27.30 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=31.3
Q ss_pred cCCceEEEEcccHhHHHHHHHHHHhCCCe-EEEeecCCC
Q 004925 568 DGSAKGIVFSQFTSFLDLINYSLHKSGVN-CVQLVGSMS 605 (723)
Q Consensus 568 ~~~~KvIIF~~~~~~~~~l~~~L~~~g~~-~~~i~g~~~ 605 (723)
.++.++||||..-.........|...|++ +..+.|++.
T Consensus 56 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 56 DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 45678999999877788889999999995 778888763
No 321
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=32.68 E-value=1.6e+02 Score=23.19 Aligned_cols=25 Identities=8% Similarity=0.185 Sum_probs=13.4
Q ss_pred eEEEEcccHhHHHHHHHHHHhCCCe
Q 004925 572 KGIVFSQFTSFLDLINYSLHKSGVN 596 (723)
Q Consensus 572 KvIIF~~~~~~~~~l~~~L~~~g~~ 596 (723)
+++|..........+...|+..|+.
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~g~~ 28 (120)
T 1tmy_A 4 RVLIVDDAAFMRMMLKDIITKAGYE 28 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCE
T ss_pred eEEEEcCcHHHHHHHHHHHhhcCcE
Confidence 4555555555555555555555554
No 322
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=32.60 E-value=1.5e+02 Score=24.93 Aligned_cols=31 Identities=6% Similarity=-0.067 Sum_probs=22.4
Q ss_pred CceEEEEcccHhHHHHHHHHHHhCCCeEEEe
Q 004925 570 SAKGIVFSQFTSFLDLINYSLHKSGVNCVQL 600 (723)
Q Consensus 570 ~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i 600 (723)
..+++|..........+...|...|+.+...
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~ 44 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPLPYTLHFA 44 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTSSCEEEEE
T ss_pred CceEEEECCCHHHHHHHHHHhcccCcEEEEE
Confidence 3577777777777888888887777765544
No 323
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=32.23 E-value=88 Score=24.25 Aligned_cols=46 Identities=13% Similarity=-0.084 Sum_probs=33.6
Q ss_pred eEEEEcccHhH-H------HHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhc
Q 004925 572 KGIVFSQFTSF-L------DLINYSLHKSGVNCVQLVGSMSIPARDAAINRFT 617 (723)
Q Consensus 572 KvIIF~~~~~~-~------~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~ 617 (723)
+++||+..... - ....++|...|+++..++=....+.++.+.....
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g 55 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAG 55 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhC
Confidence 67888765433 2 5888889999999888887777666666666554
No 324
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=32.16 E-value=87 Score=26.21 Aligned_cols=29 Identities=10% Similarity=0.047 Sum_probs=17.6
Q ss_pred CceEEEEcccHhHHHHHHHHHHhCCCeEE
Q 004925 570 SAKGIVFSQFTSFLDLINYSLHKSGVNCV 598 (723)
Q Consensus 570 ~~KvIIF~~~~~~~~~l~~~L~~~g~~~~ 598 (723)
..+++|..........+...|...|+.+.
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~g~~v~ 36 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQEGFDII 36 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTEEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCeEE
Confidence 34566666666666666666666665544
No 325
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=31.77 E-value=17 Score=34.90 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=18.8
Q ss_pred CCCCcccCCCCCcHHHHHHHHHh
Q 004925 49 IRGGILADEMGMGKTIQAIALVL 71 (723)
Q Consensus 49 ~~g~iLad~~GlGKT~~al~~i~ 71 (723)
.+|.+|.-++|+|||..+-++..
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 36788999999999998866654
No 326
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=31.36 E-value=17 Score=34.65 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=17.4
Q ss_pred cCCCCCcHHHHHHHHHhcCccc
Q 004925 55 ADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 55 ad~~GlGKT~~al~~i~~~~~~ 76 (723)
.---|.|||.+++.++..+...
T Consensus 6 s~kGGvGKTt~a~~LA~~la~~ 27 (254)
T 3kjh_A 6 AGKGGVGKTTVAAGLIKIMASD 27 (254)
T ss_dssp ECSSSHHHHHHHHHHHHHHTTT
T ss_pred ecCCCCCHHHHHHHHHHHHHHC
Confidence 4467999999998888776654
No 327
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=31.29 E-value=45 Score=30.54 Aligned_cols=79 Identities=11% Similarity=0.130 Sum_probs=46.3
Q ss_pred CcchHHHHHHHHHHHHHhh----cCCceEEEEcccHhHHHH-HHHHHHh---CCCeEEEeecCCCHHHHHHHHHhhcCCC
Q 004925 549 QSSTKIEALREEIRFMVER----DGSAKGIVFSQFTSFLDL-INYSLHK---SGVNCVQLVGSMSIPARDAAINRFTEDP 620 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~----~~~~KvIIF~~~~~~~~~-l~~~L~~---~g~~~~~i~g~~~~~~r~~~i~~F~~~~ 620 (723)
.+++|--.....+...+.. ..+.++||.+.....+.. +.+.+.. .++.+..++|+.....+...+. .
T Consensus 57 tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~ 131 (216)
T 3b6e_A 57 TGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV-----K 131 (216)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH-----H
T ss_pred CCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc-----c
Confidence 6778887776666654432 235789999998877554 5554444 3678888888765332221111 1
Q ss_pred CceEEEEecCCC
Q 004925 621 DCKIFLMSLKAG 632 (723)
Q Consensus 621 ~~~vll~s~~~~ 632 (723)
.+.|++++...+
T Consensus 132 ~~~i~v~T~~~l 143 (216)
T 3b6e_A 132 SCDIIISTAQIL 143 (216)
T ss_dssp HCSEEEEEHHHH
T ss_pred CCCEEEECHHHH
Confidence 345677776554
No 328
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=31.29 E-value=32 Score=28.71 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=30.5
Q ss_pred cCCceEEEEcccHhH--HHHHHHHHHhCCCeEEEeecCC
Q 004925 568 DGSAKGIVFSQFTSF--LDLINYSLHKSGVNCVQLVGSM 604 (723)
Q Consensus 568 ~~~~KvIIF~~~~~~--~~~l~~~L~~~g~~~~~i~g~~ 604 (723)
.++.++||||..... .......|...|+.+..+.|++
T Consensus 69 ~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~ 107 (124)
T 3flh_A 69 DPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGAL 107 (124)
T ss_dssp CTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcH
Confidence 345689999998765 7888899999999988888876
No 329
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=31.21 E-value=76 Score=24.07 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=28.1
Q ss_pred cCCceEEEEcccHhHHHHHHHHHHhCCCe-EEEeecCC
Q 004925 568 DGSAKGIVFSQFTSFLDLINYSLHKSGVN-CVQLVGSM 604 (723)
Q Consensus 568 ~~~~KvIIF~~~~~~~~~l~~~L~~~g~~-~~~i~g~~ 604 (723)
.++.++||||..-.........|...|++ +..+ |++
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~ 75 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGL 75 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EET
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCH
Confidence 45678999999877788889999999996 4444 765
No 330
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=30.99 E-value=1.3e+02 Score=24.65 Aligned_cols=28 Identities=11% Similarity=0.116 Sum_probs=16.5
Q ss_pred ceEEEEcccHhHHHHHHHHHHhCCCeEE
Q 004925 571 AKGIVFSQFTSFLDLINYSLHKSGVNCV 598 (723)
Q Consensus 571 ~KvIIF~~~~~~~~~l~~~L~~~g~~~~ 598 (723)
.+++|..........+...|...|+.+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~ 31 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVI 31 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSSEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCcEEE
Confidence 3566666666666666666665555544
No 331
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=30.78 E-value=1.1e+02 Score=24.19 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=12.8
Q ss_pred eEEEEcccHhHHHHHHHHHHhCCCeE
Q 004925 572 KGIVFSQFTSFLDLINYSLHKSGVNC 597 (723)
Q Consensus 572 KvIIF~~~~~~~~~l~~~L~~~g~~~ 597 (723)
+++|..........+...|...|+.+
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v 28 (120)
T 2a9o_A 3 KILIVDDEKPISDIIKFNMTKEGYEV 28 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEE
T ss_pred eEEEEcCCHHHHHHHHHHHHhcCcEE
Confidence 34455555555555555555444443
No 332
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=30.55 E-value=21 Score=34.43 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=16.8
Q ss_pred cCCCCCcHHHHHHHHHhcCccc
Q 004925 55 ADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 55 ad~~GlGKT~~al~~i~~~~~~ 76 (723)
..--|.|||.+++.++..+...
T Consensus 7 s~KGGvGKTT~a~nLA~~la~~ 28 (269)
T 1cp2_A 7 YGKGGIGKSTTTQNLTSGLHAM 28 (269)
T ss_dssp EECTTSSHHHHHHHHHHHHHTT
T ss_pred ecCCCCcHHHHHHHHHHHHHHC
Confidence 3467999999998888776543
No 333
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=30.48 E-value=61 Score=32.04 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=19.5
Q ss_pred CCCcccCCCCCcHHHHHHHHHhc
Q 004925 50 RGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~ 72 (723)
.+.+|.-++|+|||..|-++...
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999998777653
No 334
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=30.15 E-value=17 Score=33.67 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=20.5
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcC
Q 004925 50 RGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
++.++.-++|+|||..|+.++...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 556889999999999999988754
No 335
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=29.97 E-value=35 Score=36.34 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=20.2
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcC
Q 004925 50 RGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
.+.||..++|+|||..+-+++...
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 677999999999999987777654
No 336
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=29.92 E-value=40 Score=29.08 Aligned_cols=36 Identities=11% Similarity=0.070 Sum_probs=30.4
Q ss_pred CCceEEEEcccH--hHHHHHHHHHHhCCCeEEEeecCC
Q 004925 569 GSAKGIVFSQFT--SFLDLINYSLHKSGVNCVQLVGSM 604 (723)
Q Consensus 569 ~~~KvIIF~~~~--~~~~~l~~~L~~~g~~~~~i~g~~ 604 (723)
.+.++||||..- .........|...|+.+..+.|++
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~ 108 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGI 108 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcH
Confidence 456899999987 467788899999999999999986
No 337
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=29.91 E-value=1.2e+02 Score=24.80 Aligned_cols=30 Identities=7% Similarity=-0.063 Sum_probs=19.6
Q ss_pred ceEEEEcccHhHHHHHHHHHHhCCCeEEEe
Q 004925 571 AKGIVFSQFTSFLDLINYSLHKSGVNCVQL 600 (723)
Q Consensus 571 ~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i 600 (723)
.+++|..........+...|...|+.+...
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~ 37 (137)
T 3hdg_A 8 LKILIVEDDTDAREWLSTIISNHFPEVWSA 37 (137)
T ss_dssp CCEEEECSCHHHHHHHHHHHHTTCSCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHhcCcEEEEE
Confidence 467777777777777777777666554443
No 338
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=29.83 E-value=2.2e+02 Score=22.93 Aligned_cols=95 Identities=11% Similarity=-0.114 Sum_probs=49.8
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcC---CCCceEEEEecCCCcccccccccCEEE
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE---DPDCKIFLMSLKAGGVALNLTVASHVF 645 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~---~~~~~vll~s~~~~~eGlnL~~a~~vI 645 (723)
.+..+..+....+.+. .+......++.++-.++...-...++..+. .+...+++++.....+-.....+...-
T Consensus 26 ~~~~v~~~~~~~~a~~----~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~ 101 (133)
T 3nhm_A 26 GEFDCTTAADGASGLQ----QALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDA 101 (133)
T ss_dssp TTSEEEEESSHHHHHH----HHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSE
T ss_pred CCcEEEEECCHHHHHH----HHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCce
Confidence 3445555554444333 344556777887766654444445555543 235566666644322222221222122
Q ss_pred EECCCCChhhHHHHHHhhhhcC
Q 004925 646 LMDPWWNPAVEQQAQDRIHRIG 667 (723)
Q Consensus 646 ~~d~~wn~~~~~Q~iGRi~R~G 667 (723)
++.-|+++..+.+++.++.+.+
T Consensus 102 ~l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 102 YLVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp EEESSCCHHHHHHHHHHHHHHH
T ss_pred EEeccCCHHHHHHHHHHHHhhh
Confidence 4446788888888888887643
No 339
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=29.68 E-value=80 Score=32.02 Aligned_cols=64 Identities=6% Similarity=0.057 Sum_probs=43.3
Q ss_pred CcchHHHH-HHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHh----CCCeEEEeecCCCHHHHHHH
Q 004925 549 QSSTKIEA-LREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK----SGVNCVQLVGSMSIPARDAA 612 (723)
Q Consensus 549 ~~s~Kl~~-l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~----~g~~~~~i~g~~~~~~r~~~ 612 (723)
.+++|--. ++-++..+.....+.++||.+..+..+..+.+.+.. .++.+..+.|+.+..+....
T Consensus 67 TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 135 (394)
T 1fuu_A 67 SGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG 135 (394)
T ss_dssp SSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhh
Confidence 67888866 444444332223456999999998887766666654 47889999999876554443
No 340
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=29.50 E-value=2.2e+02 Score=22.76 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHh---CCCeEEEeecCCCHHHHHHHHHhhcCCCCceEE
Q 004925 555 EALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK---SGVNCVQLVGSMSIPARDAAINRFTEDPDCKIF 625 (723)
Q Consensus 555 ~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~---~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vl 625 (723)
.-+.+.+.++.+..|.-.+++.... +...++.+++.. .|..+..++..-....|....+.|..+ +..|-
T Consensus 62 edfrenireiwerypqldvvvivtt-ddkewikdfieeakergvevfvvynnkdddrrkeaqqefrsd-gvdvr 133 (162)
T 2l82_A 62 EDFRENIREIWERYPQLDVVVIVTT-DDKEWIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFRSD-GVDVR 133 (162)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEEC-CCHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHCCS-SCEEE
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEec-CcHHHHHHHHHHHHhcCcEEEEEecCCCchhHHHHHHHhhhc-Cceee
Confidence 4456667777766776665555432 334566666644 599999999888888999999999876 55443
No 341
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=29.45 E-value=1.6e+02 Score=24.77 Aligned_cols=63 Identities=6% Similarity=0.136 Sum_probs=39.6
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCc-ccccc
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGG-VALNL 638 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~-eGlnL 638 (723)
.+.+++|..........+...|...|+.+..... .. ..+...... .+.++|+.....+ .|+.+
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~---~~---~a~~~l~~~-~~dlvi~d~~l~~~~g~~~ 69 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTS---PL---DALEALKGT-SVQLVISDMRMPEMGGEVF 69 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESC---HH---HHHHHHTTS-CCSEEEEESSCSSSCHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCC---HH---HHHHHHhcC-CCCEEEEecCCCCCCHHHH
Confidence 3468888888888888899999888887664432 12 334444433 4566776655432 45543
No 342
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=29.27 E-value=1.5e+02 Score=23.62 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=13.9
Q ss_pred eEEEEcccHhHHHHHHHHHHhCCCeE
Q 004925 572 KGIVFSQFTSFLDLINYSLHKSGVNC 597 (723)
Q Consensus 572 KvIIF~~~~~~~~~l~~~L~~~g~~~ 597 (723)
+++|..........+...|...|+.+
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~v 30 (124)
T 1srr_A 5 KILIVDDQSGIRILLNEVFNKEGYQT 30 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEE
Confidence 45555555555555555555555543
No 343
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=28.76 E-value=1.7e+02 Score=24.01 Aligned_cols=29 Identities=10% Similarity=0.043 Sum_probs=20.6
Q ss_pred ceEEEEcccHhHHHHHHHHHHhCCCeEEE
Q 004925 571 AKGIVFSQFTSFLDLINYSLHKSGVNCVQ 599 (723)
Q Consensus 571 ~KvIIF~~~~~~~~~l~~~L~~~g~~~~~ 599 (723)
.+++|..........+...|...|+.+..
T Consensus 5 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~ 33 (136)
T 2qzj_A 5 TKILIIDGDKDNCQKLKGFLEEKGISIDL 33 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEE
Confidence 46777777777777777777777766543
No 344
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=28.73 E-value=25 Score=33.24 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=20.6
Q ss_pred cccCCCCCcHHHHHHHHHhcCcccc
Q 004925 53 ILADEMGMGKTIQAIALVLAKREIR 77 (723)
Q Consensus 53 iLad~~GlGKT~~al~~i~~~~~~~ 77 (723)
|-+-++|.|||.++++++..+...+
T Consensus 9 Itgt~t~vGKT~vt~~L~~~l~~~G 33 (228)
T 3of5_A 9 IIGTDTEVGKTYISTKLIEVCEHQN 33 (228)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHCC
Confidence 4577899999999999998876654
No 345
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=28.58 E-value=2.3e+02 Score=25.93 Aligned_cols=55 Identities=16% Similarity=0.085 Sum_probs=42.2
Q ss_pred CceEEEEcccH----hHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEe
Q 004925 570 SAKGIVFSQFT----SFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMS 628 (723)
Q Consensus 570 ~~KvIIF~~~~----~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s 628 (723)
+.++|+.+--- --...+...|+.+|+.+..+....+.++-...+.+.+. .++.+|
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~----d~v~lS 146 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQP----DIVGMS 146 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCC----SEEEEE
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCC----CEEEEe
Confidence 45788887543 34789999999999999988888888888888887743 345555
No 346
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=28.43 E-value=2.2e+02 Score=28.95 Aligned_cols=93 Identities=14% Similarity=0.103 Sum_probs=56.4
Q ss_pred CcchHHH-HHHHHHHHHHhhcC------------------CceEEEEcccHhHHHHHHHHHHh----CCCeEEEeecCCC
Q 004925 549 QSSTKIE-ALREEIRFMVERDG------------------SAKGIVFSQFTSFLDLINYSLHK----SGVNCVQLVGSMS 605 (723)
Q Consensus 549 ~~s~Kl~-~l~~~l~~~~~~~~------------------~~KvIIF~~~~~~~~~l~~~L~~----~g~~~~~i~g~~~ 605 (723)
.+++|-- +++-++..+..... +.++||.+..+..+..+.+.++. .++.+..+.|+.+
T Consensus 61 TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~ 140 (417)
T 2i4i_A 61 TGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAD 140 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSC
T ss_pred CCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCC
Confidence 6677875 45555555443221 14799999999877766666654 4788999999887
Q ss_pred HHHHHHHHHhhcCCCCceEEEEecCCCcc-----cccccccCEEEE
Q 004925 606 IPARDAAINRFTEDPDCKIFLMSLKAGGV-----ALNLTVASHVFL 646 (723)
Q Consensus 606 ~~~r~~~i~~F~~~~~~~vll~s~~~~~e-----GlnL~~a~~vI~ 646 (723)
..+.... ... ++.|++++...+.. .+++...+++|+
T Consensus 141 ~~~~~~~---~~~--~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iVi 181 (417)
T 2i4i_A 141 IGQQIRD---LER--GCHLLVATPGRLVDMMERGKIGLDFCKYLVL 181 (417)
T ss_dssp HHHHHHH---HTT--CCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred HHHHHHH---hhC--CCCEEEEChHHHHHHHHcCCcChhhCcEEEE
Confidence 6544332 222 45677777644322 234555555554
No 347
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=28.31 E-value=25 Score=36.12 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=20.2
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcC
Q 004925 50 RGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
.+.+|..++|+|||..|-++....
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 678899999999999987777654
No 348
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=28.25 E-value=2.4e+02 Score=22.82 Aligned_cols=17 Identities=18% Similarity=0.143 Sum_probs=8.8
Q ss_pred CCCChhhHHHHHHhhhh
Q 004925 649 PWWNPAVEQQAQDRIHR 665 (723)
Q Consensus 649 ~~wn~~~~~Q~iGRi~R 665 (723)
-|.++..+.+++.++.+
T Consensus 104 KP~~~~~l~~~i~~~~~ 120 (136)
T 1mvo_A 104 KPFSPREVNARVKAILR 120 (136)
T ss_dssp SSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 34455555555555544
No 349
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=28.04 E-value=1.5e+02 Score=23.95 Aligned_cols=82 Identities=12% Similarity=0.044 Sum_probs=46.5
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCC-ccccccc-------c
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG-GVALNLT-------V 640 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~-~eGlnL~-------~ 640 (723)
.+.+++|..........+...|...|+.+.... +.. ..+...... .+.++|+..... ..|+++- .
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~---~~~---~a~~~l~~~-~~dlvi~d~~l~~~~g~~~~~~l~~~~~ 78 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAA---DGV---DALELLGGF-TPDLMICDIAMPRMNGLKLLEHIRNRGD 78 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEES---CHH---HHHHHHTTC-CCSEEEECCC-----CHHHHHHHHHTTC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeC---CHH---HHHHHHhcC-CCCEEEEecCCCCCCHHHHHHHHHhcCC
Confidence 456888888888888999999988888765532 222 334444433 456677665432 2355532 1
Q ss_pred cCEEEEECCCCChhhHH
Q 004925 641 ASHVFLMDPWWNPAVEQ 657 (723)
Q Consensus 641 a~~vI~~d~~wn~~~~~ 657 (723)
...+|++....++....
T Consensus 79 ~~~ii~~t~~~~~~~~~ 95 (130)
T 3eod_A 79 QTPVLVISATENMADIA 95 (130)
T ss_dssp CCCEEEEECCCCHHHHH
T ss_pred CCCEEEEEcCCCHHHHH
Confidence 22355555554544333
No 350
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=27.94 E-value=38 Score=36.51 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=20.5
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcC
Q 004925 50 RGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
++.+|.-++|+|||..|-+++...
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 677899999999999998877654
No 351
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=27.90 E-value=1.5e+02 Score=23.48 Aligned_cols=24 Identities=8% Similarity=0.225 Sum_probs=10.4
Q ss_pred EEEEcccHhHHHHHHHHHHhCCCe
Q 004925 573 GIVFSQFTSFLDLINYSLHKSGVN 596 (723)
Q Consensus 573 vIIF~~~~~~~~~l~~~L~~~g~~ 596 (723)
++|..........+...|...|+.
T Consensus 4 ilivdd~~~~~~~l~~~l~~~~~~ 27 (121)
T 1zh2_A 4 VLIVEDEQAIRRFLRTALEGDGMR 27 (121)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTCE
T ss_pred EEEEeCCHHHHHHHHHHHhcCCCE
Confidence 344444444444444444444443
No 352
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=27.81 E-value=27 Score=33.38 Aligned_cols=25 Identities=28% Similarity=0.110 Sum_probs=21.1
Q ss_pred cccCCCCCcHHHHHHHHHhcCcccc
Q 004925 53 ILADEMGMGKTIQAIALVLAKREIR 77 (723)
Q Consensus 53 iLad~~GlGKT~~al~~i~~~~~~~ 77 (723)
|.+-++|+|||+++++++..+...+
T Consensus 26 ItgT~t~vGKT~vs~gL~~~L~~~G 50 (242)
T 3qxc_A 26 ISATNTNAGKTTCARLLAQYCNACG 50 (242)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCcHHHHHHHHHHHHHhCC
Confidence 5578899999999999998877654
No 353
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=27.56 E-value=19 Score=34.79 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=20.9
Q ss_pred cccCCCCCcHHHHHHHHHhcCcccc
Q 004925 53 ILADEMGMGKTIQAIALVLAKREIR 77 (723)
Q Consensus 53 iLad~~GlGKT~~al~~i~~~~~~~ 77 (723)
|-+-++|+|||.++++++..+.+.+
T Consensus 31 Itgt~t~vGKT~vt~gL~~~l~~~G 55 (251)
T 3fgn_A 31 VTGTGTGVGKTVVCAALASAARQAG 55 (251)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCC
Confidence 5578899999999999998876654
No 354
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=27.55 E-value=42 Score=35.33 Aligned_cols=46 Identities=20% Similarity=0.181 Sum_probs=30.6
Q ss_pred CcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhhHHHHHHHH
Q 004925 52 GILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEI 115 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~~qW~~ei 115 (723)
.+|+..+|+|||..++.++........ .+++++....-..++..-+
T Consensus 203 ~ii~G~pg~GKT~lal~ia~~~a~~~g------------------~~vl~~slE~~~~~l~~R~ 248 (444)
T 2q6t_A 203 NIIAARPAMGKTAFALTIAQNAALKEG------------------VGVGIYSLEMPAAQLTLRM 248 (444)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTC------------------CCEEEEESSSCHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCC------------------CeEEEEECCCCHHHHHHHH
Confidence 488999999999999887765443211 4778877654344444443
No 355
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=27.54 E-value=22 Score=40.68 Aligned_cols=25 Identities=36% Similarity=0.359 Sum_probs=20.7
Q ss_pred CCCCCcccCCCCCcHHHHHHHHHhc
Q 004925 48 AIRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 48 ~~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
..+|.||.-++|+|||..|=+++..
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999998766653
No 356
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=27.45 E-value=26 Score=33.04 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=18.0
Q ss_pred cccCCCCCcHHHHHHHHHhcCcc
Q 004925 53 ILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 53 iLad~~GlGKT~~al~~i~~~~~ 75 (723)
+..-.-|.|||.+++.++..+..
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~ 29 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGD 29 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHH
T ss_pred EecCCCCCCHHHHHHHHHHHHHh
Confidence 34567899999999888877654
No 357
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=27.44 E-value=80 Score=26.05 Aligned_cols=81 Identities=9% Similarity=-0.043 Sum_probs=48.1
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhCC-CeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCC-Ccccccccc------
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKSG-VNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA-GGVALNLTV------ 640 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~g-~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~-~~eGlnL~~------ 640 (723)
...+++|..........+...|+..| +.+....... ..+..+.. ..+.++|+.... ...|+.+-.
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~------~a~~~l~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 85 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDD------FLKGPPAD-TRPGIVILDLGGGDLLGKPGIVEARALW 85 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGG------GGGCCCTT-CCCSEEEEEEETTGGGGSTTHHHHHGGG
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHH------HHHHHHhc-cCCCEEEEeCCCCCchHHHHHHHHHhhC
Confidence 34589999999999999999999998 8776554321 22333332 245666665443 234665421
Q ss_pred -cCEEEEECCCCChhhH
Q 004925 641 -ASHVFLMDPWWNPAVE 656 (723)
Q Consensus 641 -a~~vI~~d~~wn~~~~ 656 (723)
.-.+|++....++...
T Consensus 86 ~~~~ii~~s~~~~~~~~ 102 (135)
T 3snk_A 86 ATVPLIAVSDELTSEQT 102 (135)
T ss_dssp TTCCEEEEESCCCHHHH
T ss_pred CCCcEEEEeCCCCHHHH
Confidence 2235555554444433
No 358
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=27.18 E-value=1.5e+02 Score=32.35 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=50.9
Q ss_pred CceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcC-CCCceEEEEecCC
Q 004925 570 SAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE-DPDCKIFLMSLKA 631 (723)
Q Consensus 570 ~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~-~~~~~vll~s~~~ 631 (723)
+.++||.++.+..+....+.|...|+.+..++|+.+..++..+...+.. .+.+.+++++...
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~ 146 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEK 146 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhH
Confidence 3589999999999998889998889999999999998888888777742 3467777777653
No 359
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=27.07 E-value=29 Score=32.03 Aligned_cols=38 Identities=18% Similarity=0.073 Sum_probs=22.5
Q ss_pred eEEEEeeccccccC---CCcHHHHHHHhhhcC----ceEEEeCcC
Q 004925 244 WERIILDEAHFIKD---RRSNTAKAVLALESS----YKWALSGTP 281 (723)
Q Consensus 244 ~~~vIiDEaH~~kn---~~s~~~~~l~~l~~~----~~l~LTaTP 281 (723)
-.+|||||||.+-+ ......+.+..+... .-++|.+.|
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 36899999999832 222223445555332 246777777
No 360
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.92 E-value=1.2e+02 Score=24.57 Aligned_cols=46 Identities=15% Similarity=-0.025 Sum_probs=34.4
Q ss_pred ceEEEEcccHhH-HH------HHHHHHHhCCCeEEEeecCCCHHHHHHHHHhh
Q 004925 571 AKGIVFSQFTSF-LD------LINYSLHKSGVNCVQLVGSMSIPARDAAINRF 616 (723)
Q Consensus 571 ~KvIIF~~~~~~-~~------~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F 616 (723)
.+|+||+..... -. .+.++|...|+++..++=....+.++.+...+
T Consensus 8 m~V~vy~~~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~ 60 (111)
T 2ct6_A 8 MVIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNV 60 (111)
T ss_dssp CCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSC
T ss_pred cEEEEEEcCCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh
Confidence 478899765543 22 58889999999998888777777777666665
No 361
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=26.88 E-value=24 Score=35.44 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=18.8
Q ss_pred cccCCCCCcHHHHHHHHHhcCccc
Q 004925 53 ILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 53 iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
+..-.-|.|||.+|.+++..+...
T Consensus 18 v~sgKGGvGKTTvA~~LA~~lA~~ 41 (324)
T 3zq6_A 18 FIGGKGGVGKTTISAATALWMARS 41 (324)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEeCCCCchHHHHHHHHHHHHHHC
Confidence 556778999999998888776543
No 362
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=26.84 E-value=1.7e+02 Score=23.21 Aligned_cols=28 Identities=4% Similarity=0.046 Sum_probs=19.4
Q ss_pred ceEEEEcccHhHHHHHHHHHHhCCCeEE
Q 004925 571 AKGIVFSQFTSFLDLINYSLHKSGVNCV 598 (723)
Q Consensus 571 ~KvIIF~~~~~~~~~l~~~L~~~g~~~~ 598 (723)
.+++|..........+...|...|+.+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~ 31 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVF 31 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEE
Confidence 3677777777777777777777676644
No 363
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=26.80 E-value=1.8e+02 Score=23.92 Aligned_cols=32 Identities=13% Similarity=0.118 Sum_probs=23.6
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhCCC--eEEEe
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKSGV--NCVQL 600 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~g~--~~~~i 600 (723)
...+++|..........+...|...|+ .+...
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~ 38 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRC 38 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEE
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEE
Confidence 345788888888888888888888877 44443
No 364
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=26.76 E-value=31 Score=34.83 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=19.3
Q ss_pred CcccCCCCCcHHHHHHHHHhcCccc
Q 004925 52 GILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
.+...--|.|||.+|++++..+...
T Consensus 19 ~~~sgkGGvGKTt~a~~lA~~la~~ 43 (334)
T 3iqw_A 19 IFVGGKGGVGKTTTSCSLAIQLAKV 43 (334)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTTS
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhC
Confidence 4556778999999998888776543
No 365
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=26.69 E-value=1.4e+02 Score=27.23 Aligned_cols=93 Identities=12% Similarity=0.043 Sum_probs=62.7
Q ss_pred CceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEECC
Q 004925 570 SAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDP 649 (723)
Q Consensus 570 ~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d~ 649 (723)
+.|+++.+.|....+.+.+.+.+.+..+..+.|.. ++-....+.. + .++.|+|.- |+.+-=|...-.+=..+.
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l--~~~v~~a~~~-~-~~~dVIISR---Ggta~~lr~~~~iPVV~I 76 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASL--TRASKIAFGL-Q-DEVDAIISR---GATSDYIKKSVSIPSISI 76 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCH--HHHHHHHHHH-T-TTCSEEEEE---HHHHHHHHTTCSSCEEEE
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCH--HHHHHHHHHh-c-CCCeEEEEC---ChHHHHHHHhCCCCEEEE
Confidence 35889999999999988888887777777777775 4444555555 3 466766633 222222333222445666
Q ss_pred CCChhhHHHHHHhhhhcCCc
Q 004925 650 WWNPAVEQQAQDRIHRIGQY 669 (723)
Q Consensus 650 ~wn~~~~~Q~iGRi~R~Gq~ 669 (723)
+.+..++.|++-++.+.+.+
T Consensus 77 ~~s~~Dil~al~~a~~~~~k 96 (196)
T 2q5c_A 77 KVTRFDTMRAVYNAKRFGNE 96 (196)
T ss_dssp CCCHHHHHHHHHHHGGGCSE
T ss_pred cCCHhHHHHHHHHHHhhCCc
Confidence 77899999999999988763
No 366
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=26.49 E-value=40 Score=28.65 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=30.6
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhCCCe-EEEeecCC
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKSGVN-CVQLVGSM 604 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~g~~-~~~i~g~~ 604 (723)
.+.++||||..-.........|...|+. +..+.|++
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 121 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGF 121 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCH
Confidence 4568999999887777888999999996 88888876
No 367
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=26.47 E-value=25 Score=34.50 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=17.0
Q ss_pred cCCCCCcHHHHHHHHHhcCccc
Q 004925 55 ADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 55 ad~~GlGKT~~al~~i~~~~~~ 76 (723)
..--|.|||.+++.++..+...
T Consensus 8 s~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 8 YGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp EECTTSSHHHHHHHHHHHHHHT
T ss_pred eCCCcCcHHHHHHHHHHHHHHC
Confidence 3467999999998888776543
No 368
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=26.44 E-value=70 Score=25.86 Aligned_cols=38 Identities=16% Similarity=0.052 Sum_probs=31.4
Q ss_pred cCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCC
Q 004925 568 DGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMS 605 (723)
Q Consensus 568 ~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~ 605 (723)
.++.++||||..-.........|...|+....+.|++.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 45678999999887788889999999997677888863
No 369
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=26.37 E-value=2.1e+02 Score=23.85 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=17.2
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhCCC
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKSGV 595 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~g~ 595 (723)
.+.|++|..........+...|...|.
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~~~ 40 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLSGS 40 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHSS
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhCCC
Confidence 445666666666666666666666653
No 370
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=26.30 E-value=76 Score=31.24 Aligned_cols=90 Identities=7% Similarity=-0.026 Sum_probs=58.4
Q ss_pred CcchHHHH-HHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhC-----CCeEEEeecCCCHHHHHHHHHhhcCCCCc
Q 004925 549 QSSTKIEA-LREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS-----GVNCVQLVGSMSIPARDAAINRFTEDPDC 622 (723)
Q Consensus 549 ~~s~Kl~~-l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~-----g~~~~~i~g~~~~~~r~~~i~~F~~~~~~ 622 (723)
.+|+|.-+ ++-++..+.....+.++||.+..+..+..+.+.++.. ++.+..+.|+.+..... ...+
T Consensus 140 TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 211 (300)
T 3fmo_B 140 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ--------KISE 211 (300)
T ss_dssp TTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC--------CCCC
T ss_pred CCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh--------cCCC
Confidence 56788755 5566665543344558999999998887777766653 56777777776532211 2356
Q ss_pred eEEEEecCCC-----c-ccccccccCEEEE
Q 004925 623 KIFLMSLKAG-----G-VALNLTVASHVFL 646 (723)
Q Consensus 623 ~vll~s~~~~-----~-eGlnL~~a~~vI~ 646 (723)
.|+|++.... . ..+++....++|+
T Consensus 212 ~IlV~TP~~l~~~l~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 212 QIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (300)
T ss_dssp SEEEECHHHHHHHHTTTCCCCGGGCSEEEE
T ss_pred CEEEECHHHHHHHHHhcCCCChhhceEEEE
Confidence 6788776543 1 2467778877776
No 371
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=26.18 E-value=1.4e+02 Score=24.39 Aligned_cols=63 Identities=6% Similarity=-0.048 Sum_probs=37.5
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhCCCeEEE-eecCCCHHHHHHHHHhhcCCCCceEEEEecCCC--cccccc
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQ-LVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG--GVALNL 638 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~-i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~--~eGlnL 638 (723)
...+++|..........+...|...|+.+.. ... ..+-...+... .+.++|+..... ..|+.+
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~---~~~a~~~~~~~----~~dlii~d~~~~~~~~g~~~ 73 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDN---GEEAVRCAPDL----RPDIALVDIMLCGALDGVET 73 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESS---HHHHHHHHHHH----CCSEEEEESSCCSSSCHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECC---HHHHHHHHHhC----CCCEEEEecCCCCCCCHHHH
Confidence 4467888888888888888888888877653 322 12222222222 345666665542 356553
No 372
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.11 E-value=39 Score=34.03 Aligned_cols=39 Identities=15% Similarity=0.057 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 33 YQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 33 ~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
+.+..+...+.. +...+.++..+.|+|||.++-+++...
T Consensus 32 ~~~~~L~~~i~~--g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 32 EVITTVRKFVDE--GKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHHHHT--TCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 444444444432 222347889999999999987777653
No 373
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=26.08 E-value=25 Score=34.80 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=18.0
Q ss_pred ccCCCCCcHHHHHHHHHhcCccc
Q 004925 54 LADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 54 Lad~~GlGKT~~al~~i~~~~~~ 76 (723)
++.--|.|||.+++.++..+...
T Consensus 46 v~~KGGvGKTT~a~nLA~~La~~ 68 (307)
T 3end_A 46 VYGKGGIGKSTTSSNLSAAFSIL 68 (307)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHT
T ss_pred EECCCCccHHHHHHHHHHHHHHC
Confidence 34688999999998888776553
No 374
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=26.07 E-value=54 Score=28.30 Aligned_cols=37 Identities=5% Similarity=-0.018 Sum_probs=29.8
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhCCCe-EEEeecCCC
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKSGVN-CVQLVGSMS 605 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~g~~-~~~i~g~~~ 605 (723)
++.++||||..-.........|...|++ +..+.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 4568999999876677888899999995 888999874
No 375
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=25.86 E-value=41 Score=28.28 Aligned_cols=38 Identities=24% Similarity=0.101 Sum_probs=31.3
Q ss_pred cCCceEEEEcccHhHHHHHHHHHHhCCCe-EEEeecCCC
Q 004925 568 DGSAKGIVFSQFTSFLDLINYSLHKSGVN-CVQLVGSMS 605 (723)
Q Consensus 568 ~~~~KvIIF~~~~~~~~~l~~~L~~~g~~-~~~i~g~~~ 605 (723)
.++.++||||..-.........|...|++ +..+.|++.
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 80 GQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 35578999999877788888899999996 888899873
No 376
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=25.58 E-value=30 Score=31.64 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=17.2
Q ss_pred ccCCCCCcHHHHHHHHHhcCcc
Q 004925 54 LADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 54 Lad~~GlGKT~~al~~i~~~~~ 75 (723)
..-.-|.|||.+++.++..+..
T Consensus 7 ~s~kgG~GKTt~a~~la~~la~ 28 (206)
T 4dzz_A 7 LNPKGGSGKTTAVINIATALSR 28 (206)
T ss_dssp CCSSTTSSHHHHHHHHHHHHHH
T ss_pred EeCCCCccHHHHHHHHHHHHHH
Confidence 3456799999999888877665
No 377
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=25.51 E-value=1.7e+02 Score=23.79 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=37.6
Q ss_pred CceEEEEcccHhHHHHHHHHHHhCCC--eEEEeecCCCHHHHHHHHHhhcC------CCCceEEEEecCCCc-cccc
Q 004925 570 SAKGIVFSQFTSFLDLINYSLHKSGV--NCVQLVGSMSIPARDAAINRFTE------DPDCKIFLMSLKAGG-VALN 637 (723)
Q Consensus 570 ~~KvIIF~~~~~~~~~l~~~L~~~g~--~~~~i~g~~~~~~r~~~i~~F~~------~~~~~vll~s~~~~~-eGln 637 (723)
+.+++|..........+...|...|+ .+..... .. ..+..... ...+.++|+.....+ .|+.
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~---~~---~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~ 72 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRD---GM---EAMAYLRQEGEYANASRPDLILLXLNLPKKDGRE 72 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECS---HH---HHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECC---HH---HHHHHHHcccccccCCCCcEEEEecCCCcccHHH
Confidence 35788888888888888888888887 4444332 12 23333333 135666776655432 4554
No 378
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=25.45 E-value=29 Score=33.18 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=18.4
Q ss_pred cccCCCCCcHHHHHHHHHhcCccc
Q 004925 53 ILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 53 iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
+..-.-|.|||.+++.++..+...
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~ 30 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQK 30 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHT
T ss_pred EECCCCCCcHHHHHHHHHHHHHhC
Confidence 345668999999998888776643
No 379
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=25.44 E-value=3e+02 Score=24.13 Aligned_cols=80 Identities=6% Similarity=0.120 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCC
Q 004925 553 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 632 (723)
Q Consensus 553 Kl~~l~~~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~ 632 (723)
-...+.+.|.. ...+ ...+.|.+........+...|...|+++..++++.. .|. ..|.+++ -..
T Consensus 46 e~~~i~~~I~~-~~~g-~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~~----~~v~v~t-~~~ 109 (174)
T 3dmn_A 46 GVDQVVDQLAM-NDSE-RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RLA----PGVIVVP-SFL 109 (174)
T ss_dssp HHHHHHHHHHH-HHHT-TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CCC----SSEEEEE-GGG
T ss_pred HHHHHHHHHHH-hccC-CCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------ccC----CCeEEEE-ccc
Confidence 34566666665 3333 457888888888899999999999999888876532 122 2344444 556
Q ss_pred cccccccccCEEEEECCCC
Q 004925 633 GVALNLTVASHVFLMDPWW 651 (723)
Q Consensus 633 ~eGlnL~~a~~vI~~d~~w 651 (723)
+-|+- .+.||++++..
T Consensus 110 ~KGlE---f~~V~~~~~~~ 125 (174)
T 3dmn_A 110 AKGLE---FDAVIVWNANQ 125 (174)
T ss_dssp CTTCC---EEEEEEETCBT
T ss_pred cCCcC---CCEEEEecCCc
Confidence 67765 57788888753
No 380
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=25.40 E-value=29 Score=33.44 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=18.5
Q ss_pred cccCCCCCcHHHHHHHHHhcCccc
Q 004925 53 ILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 53 iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
+..-.-|.|||.+++.++..+...
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~~ 46 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYARQ 46 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHT
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHC
Confidence 446677999999998888776543
No 381
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=24.73 E-value=32 Score=34.69 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=19.5
Q ss_pred CCcccCCCCCcHHHHHHHHHhcC
Q 004925 51 GGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 51 g~iLad~~GlGKT~~al~~i~~~ 73 (723)
-.+|.-+||+|||..++.++..+
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHC
Confidence 36789999999999999888754
No 382
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=24.70 E-value=46 Score=28.36 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=31.1
Q ss_pred cCCceEEEEcccHhHHHHHHHHHHhCCCe-EEEeecCC
Q 004925 568 DGSAKGIVFSQFTSFLDLINYSLHKSGVN-CVQLVGSM 604 (723)
Q Consensus 568 ~~~~KvIIF~~~~~~~~~l~~~L~~~g~~-~~~i~g~~ 604 (723)
.++.++||||..-.........|...|++ +..+.|++
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~ 117 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGM 117 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcH
Confidence 45678999999887778888999999994 88899987
No 383
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=24.67 E-value=2.6e+02 Score=22.18 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=17.2
Q ss_pred ceEEEEcccHhHHHHHHHHHHhCCC
Q 004925 571 AKGIVFSQFTSFLDLINYSLHKSGV 595 (723)
Q Consensus 571 ~KvIIF~~~~~~~~~l~~~L~~~g~ 595 (723)
.+++|..........+...|...|+
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~~~~~ 29 (128)
T 1jbe_A 5 LKFLVVDDFSTMRRIVRNLLKELGF 29 (128)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTC
T ss_pred cEEEEECCCHHHHHHHHHHHHHcCC
Confidence 4667777777777777777776666
No 384
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=24.61 E-value=24 Score=31.87 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.5
Q ss_pred CCCcccCCCCCcHHHHHHHHHhc
Q 004925 50 RGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~ 72 (723)
+|.++.-+.|+|||.+|++++..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 67788999999999999999874
No 385
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=24.43 E-value=73 Score=31.64 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=18.4
Q ss_pred CcccCCCCCcHHHHHHHHHhcC
Q 004925 52 GILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~ 73 (723)
.+|+..+|+|||..++.++...
T Consensus 71 ~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 5889999999999988777543
No 386
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=24.29 E-value=31 Score=33.15 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=18.4
Q ss_pred cccCCCCCcHHHHHHHHHhcCccc
Q 004925 53 ILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 53 iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
+..-.-|.|||.+++.++..+...
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~ 30 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQL 30 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHT
T ss_pred EECCCCCCCHHHHHHHHHHHHHhC
Confidence 445678999999998888776543
No 387
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=24.20 E-value=42 Score=34.05 Aligned_cols=43 Identities=19% Similarity=0.007 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHhc--cCCCCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 31 LRYQKEWLAWALKQE--ESAIRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 31 ~p~Q~~~~~~~~~~~--~~~~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
+..+++.+...+... ....+..+|.-+.|+|||..+-.++...
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 455666555444432 2223567889999999999887766543
No 388
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=24.09 E-value=2.1e+02 Score=23.12 Aligned_cols=16 Identities=6% Similarity=-0.296 Sum_probs=8.5
Q ss_pred CCChhhHHHHHHhhhh
Q 004925 650 WWNPAVEQQAQDRIHR 665 (723)
Q Consensus 650 ~wn~~~~~Q~iGRi~R 665 (723)
|.++..+.+++.++.+
T Consensus 104 p~~~~~l~~~i~~~~~ 119 (134)
T 3f6c_A 104 KEGMNNIIAAIEAAKN 119 (134)
T ss_dssp GGCTHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHC
Confidence 3455555555555554
No 389
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=23.96 E-value=2.6e+02 Score=22.90 Aligned_cols=79 Identities=16% Similarity=0.202 Sum_probs=43.7
Q ss_pred ceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcC-CCCceEEEEecCCC-ccccccc-------cc
Q 004925 571 AKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE-DPDCKIFLMSLKAG-GVALNLT-------VA 641 (723)
Q Consensus 571 ~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~-~~~~~vll~s~~~~-~eGlnL~-------~a 641 (723)
.+++|..........+...|...|+.+...... . ..+..... ...+.++|+..... ..|+++- ..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~---~---~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~ 77 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSS---T---EGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPH 77 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSH---H---HHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTT
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCH---H---HHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCC
Confidence 478888888888888888888888766544321 2 22333321 22455666665432 2355532 12
Q ss_pred CEEEEECCCCChhh
Q 004925 642 SHVFLMDPWWNPAV 655 (723)
Q Consensus 642 ~~vI~~d~~wn~~~ 655 (723)
-.+|++....+...
T Consensus 78 ~~ii~ls~~~~~~~ 91 (143)
T 3jte_A 78 MAVIILTGHGDLDN 91 (143)
T ss_dssp CEEEEEECTTCHHH
T ss_pred CeEEEEECCCCHHH
Confidence 34555555444433
No 390
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=23.93 E-value=82 Score=30.43 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=18.7
Q ss_pred CCCcccCCCCCcHHHHHHHHHhc
Q 004925 50 RGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~ 72 (723)
+|.+|.-+.|+|||..+-++...
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcChHHHHHHHHHHH
Confidence 56789999999999988666654
No 391
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=23.92 E-value=1.1e+02 Score=34.05 Aligned_cols=95 Identities=11% Similarity=0.085 Sum_probs=59.1
Q ss_pred CcchHHHHHHHHHHHHHhhcC---CceEEEEcccHhHHHHHHHHHHhC----CCeEEEeecCCCHHHHHHHHHhhcCCCC
Q 004925 549 QSSTKIEALREEIRFMVERDG---SAKGIVFSQFTSFLDLINYSLHKS----GVNCVQLVGSMSIPARDAAINRFTEDPD 621 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~---~~KvIIF~~~~~~~~~l~~~L~~~----g~~~~~i~g~~~~~~r~~~i~~F~~~~~ 621 (723)
.+++|--...-.+.+.+...+ +.++||.+..+..+....+.++.. |+.+..++|+.+...+...+. . +
T Consensus 37 TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~--~ 111 (696)
T 2ykg_A 37 TGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV---E--N 111 (696)
T ss_dssp TTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH---H--T
T ss_pred CCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc---c--C
Confidence 567887766666655544333 268999999877666555555443 899999999886433222221 1 4
Q ss_pred ceEEEEecCCCcc----c-c-cccccCEEEEEC
Q 004925 622 CKIFLMSLKAGGV----A-L-NLTVASHVFLMD 648 (723)
Q Consensus 622 ~~vll~s~~~~~e----G-l-nL~~a~~vI~~d 648 (723)
+.|+++|...+-. | + ++...++||+=+
T Consensus 112 ~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDE 144 (696)
T 2ykg_A 112 NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 144 (696)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCGGGCSEEEEET
T ss_pred CCEEEECHHHHHHHHhcCcccccccccEEEEeC
Confidence 5678877665432 1 2 466667777633
No 392
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=23.79 E-value=58 Score=34.38 Aligned_cols=24 Identities=25% Similarity=0.162 Sum_probs=19.5
Q ss_pred CCcccCCCCCcHHHHHHHHHhcCc
Q 004925 51 GGILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 51 g~iLad~~GlGKT~~al~~i~~~~ 74 (723)
-.+|+..+|+|||..++.++....
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 358899999999999888776554
No 393
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=23.70 E-value=30 Score=33.09 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=18.8
Q ss_pred CCCcccCCCCCcHHHHHHHHHhc
Q 004925 50 RGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~ 72 (723)
+|.+|.-++|+|||..+-++...
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999988666654
No 394
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=23.70 E-value=2.7e+02 Score=22.06 Aligned_cols=47 Identities=17% Similarity=0.074 Sum_probs=33.3
Q ss_pred ceEEEEcc-----cH-hHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhc
Q 004925 571 AKGIVFSQ-----FT-SFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFT 617 (723)
Q Consensus 571 ~KvIIF~~-----~~-~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~ 617 (723)
.+|+||+. .. ..-..+..+|...|+++..++=....+.+..+.....
T Consensus 15 ~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g 67 (109)
T 1wik_A 15 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSN 67 (109)
T ss_dssp SSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHS
T ss_pred CCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhC
Confidence 47999988 22 2467788889999999988887666555555554443
No 395
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=23.63 E-value=36 Score=35.87 Aligned_cols=25 Identities=24% Similarity=0.209 Sum_probs=20.7
Q ss_pred CCCCcccCCCCCcHHHHHHHHHhcC
Q 004925 49 IRGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 49 ~~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
.++.+|..++|+|||..|-+++...
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHc
Confidence 3788999999999999987776654
No 396
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=23.60 E-value=2e+02 Score=25.19 Aligned_cols=57 Identities=12% Similarity=-0.018 Sum_probs=40.9
Q ss_pred CCceEEEEccc----HhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcCCCCceEEEEec
Q 004925 569 GSAKGIVFSQF----TSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 629 (723)
Q Consensus 569 ~~~KvIIF~~~----~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~ 629 (723)
...|+|+++-- .--..++...|+..|+.+..+....+.++-...+.+++ +.++.+|.
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~----~diV~lS~ 77 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQED----VDVIGVSI 77 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTT----CSEEEEEE
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC----CCEEEEEe
Confidence 45688888643 34478999999999999888877888887666666663 33455553
No 397
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=23.53 E-value=26 Score=34.65 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=19.0
Q ss_pred CCcccCCCCCcHHHHHHHHHhcC
Q 004925 51 GGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 51 g~iLad~~GlGKT~~al~~i~~~ 73 (723)
..+|.-++|+|||.+|-++....
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHH
Confidence 46889999999999987776654
No 398
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=23.52 E-value=28 Score=35.69 Aligned_cols=44 Identities=20% Similarity=0.086 Sum_probs=30.9
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhhHHHHH
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWV 112 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~~qW~ 112 (723)
.-.+|+-++|+|||..++.++....... +++++|.......+|.
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~g-------------------~~vlyi~~E~s~~~~~ 118 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAG-------------------GTCAFIDAEHALDPVY 118 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT-------------------CCEEEEESSCCCCHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHCC-------------------CeEEEEECCCChhHHH
Confidence 3457789999999999988877654321 4677777765555553
No 399
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=23.47 E-value=42 Score=32.95 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=16.0
Q ss_pred CCCCCcHHHHHHHHHhcCcc
Q 004925 56 DEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 56 d~~GlGKT~~al~~i~~~~~ 75 (723)
.--|.|||.+++.++..+..
T Consensus 44 ~KGGvGKTT~a~nLA~~la~ 63 (298)
T 2oze_A 44 FKGGVGKSKLSTMFAYLTDK 63 (298)
T ss_dssp SSSSSSHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHh
Confidence 36799999999888876654
No 400
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=23.43 E-value=3.1e+02 Score=22.50 Aligned_cols=19 Identities=16% Similarity=0.048 Sum_probs=10.4
Q ss_pred ECCCCChhhHHHHHHhhhh
Q 004925 647 MDPWWNPAVEQQAQDRIHR 665 (723)
Q Consensus 647 ~d~~wn~~~~~Q~iGRi~R 665 (723)
+.-|.++..+.+++.++.+
T Consensus 122 l~Kp~~~~~L~~~i~~~~~ 140 (146)
T 4dad_A 122 LRWPLEPRALDDALKRAAA 140 (146)
T ss_dssp EESSCCHHHHHHHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHHh
Confidence 3345556666666655554
No 401
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=23.40 E-value=24 Score=39.79 Aligned_cols=95 Identities=11% Similarity=0.123 Sum_probs=58.2
Q ss_pred CcchHHHHHHHHHHHHHhhcC----CceEEEEcccHhHHHHH-HHHHHhC---CCeEEEeecCCCHHHHHHHHHhhcCCC
Q 004925 549 QSSTKIEALREEIRFMVERDG----SAKGIVFSQFTSFLDLI-NYSLHKS---GVNCVQLVGSMSIPARDAAINRFTEDP 620 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~~~~----~~KvIIF~~~~~~~~~l-~~~L~~~---g~~~~~i~g~~~~~~r~~~i~~F~~~~ 620 (723)
.+++|--...-.+..++...+ +.++||.+.....+..+ .+.|+.. ++.+..++|+.+..++...+. +
T Consensus 31 TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~ 105 (699)
T 4gl2_A 31 TGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV-----K 105 (699)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH-----H
T ss_pred CCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh-----c
Confidence 567887766666655443332 26899999988776666 6666655 389999999886544322222 2
Q ss_pred CceEEEEecCCCccc-----------ccccccCEEEEEC
Q 004925 621 DCKIFLMSLKAGGVA-----------LNLTVASHVFLMD 648 (723)
Q Consensus 621 ~~~vll~s~~~~~eG-----------lnL~~a~~vI~~d 648 (723)
...|+++|+..+..- +.+...++||+=+
T Consensus 106 ~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDE 144 (699)
T 4gl2_A 106 SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDE 144 (699)
T ss_dssp SCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEES
T ss_pred CCCEEEECHHHHHHHHhccccccccceecccCcEEEEEC
Confidence 566788887666532 4566777777633
No 402
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=23.39 E-value=2.1e+02 Score=28.89 Aligned_cols=95 Identities=11% Similarity=0.112 Sum_probs=56.6
Q ss_pred CcchHHHHHHHHHHHHHh-hcCCceEEEEcccHhHHHHHHHHHHhC----CCeEEEeecCCCHHHHHHHHHhhcCCCCce
Q 004925 549 QSSTKIEALREEIRFMVE-RDGSAKGIVFSQFTSFLDLINYSLHKS----GVNCVQLVGSMSIPARDAAINRFTEDPDCK 623 (723)
Q Consensus 549 ~~s~Kl~~l~~~l~~~~~-~~~~~KvIIF~~~~~~~~~l~~~L~~~----g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~ 623 (723)
.+++|--...-.+...+. ...+.++||.+..+..+..+.+.++.. ++.+..+.|+....+.. .... ..+.
T Consensus 67 TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~--~~~~ 141 (400)
T 1s2m_A 67 NGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDI---LRLN--ETVH 141 (400)
T ss_dssp TTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHH---HHTT--SCCS
T ss_pred CCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHH---HHhc--CCCC
Confidence 677888655444433322 224568999999988877666666543 78888999988654322 1222 3556
Q ss_pred EEEEecCCC-----cccccccccCEEEEEC
Q 004925 624 IFLMSLKAG-----GVALNLTVASHVFLMD 648 (723)
Q Consensus 624 vll~s~~~~-----~eGlnL~~a~~vI~~d 648 (723)
+++++...+ ....++...+.+|+=+
T Consensus 142 Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 171 (400)
T 1s2m_A 142 ILVGTPGRVLDLASRKVADLSDCSLFIMDE 171 (400)
T ss_dssp EEEECHHHHHHHHHTTCSCCTTCCEEEEES
T ss_pred EEEEchHHHHHHHHhCCcccccCCEEEEeC
Confidence 777665432 1224455566666533
No 403
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=23.38 E-value=34 Score=34.81 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=18.1
Q ss_pred CcccCCCCCcHHHHHHHHHhcCc
Q 004925 52 GILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~ 74 (723)
.+..---|.|||.++.+++..+.
T Consensus 21 ~v~sgKGGvGKTTvaanLA~~lA 43 (354)
T 2woj_A 21 IFVGGKGGVGKTTSSCSIAIQMA 43 (354)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEeCCCCCcHHHHHHHHHHHHH
Confidence 34566789999999988877765
No 404
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=23.35 E-value=2.2e+02 Score=28.75 Aligned_cols=12 Identities=8% Similarity=0.540 Sum_probs=5.4
Q ss_pred cCEEEEECCCCC
Q 004925 641 ASHVFLMDPWWN 652 (723)
Q Consensus 641 a~~vI~~d~~wn 652 (723)
|+.+...-|.++
T Consensus 155 adavlvv~PyY~ 166 (360)
T 4dpp_A 155 MHAALHINPYYG 166 (360)
T ss_dssp CSEEEEECCCSS
T ss_pred CCEEEEcCCCCC
Confidence 444444444443
No 405
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=23.26 E-value=54 Score=27.83 Aligned_cols=36 Identities=14% Similarity=0.028 Sum_probs=30.4
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhCCCe-EEEeecCC
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKSGVN-CVQLVGSM 604 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~g~~-~~~i~g~~ 604 (723)
++.++||||..-.........|...|++ +..+.|++
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~ 126 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSM 126 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcH
Confidence 4578999999877788889999999996 78888876
No 406
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=23.24 E-value=51 Score=23.56 Aligned_cols=50 Identities=20% Similarity=0.447 Sum_probs=36.3
Q ss_pred ccccccccccCCCCCcccccC--C---ccchhhhhhhhcCcCCCCCCCCCCCccc
Q 004925 465 VQQVCGLCNDLADDPVVTNCG--H---AFCKACLFDSSASKFVAKCPTCSIPLTV 514 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (723)
....|.+|.....++.+.+|. + .+=.+|+..=....+...||.|+.++..
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 345688888766667788863 3 5656677776666677899999988764
No 407
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=23.23 E-value=2.5e+02 Score=22.69 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=19.1
Q ss_pred ceEEEEcccHhHHHHHHHHHHhCCCeEE
Q 004925 571 AKGIVFSQFTSFLDLINYSLHKSGVNCV 598 (723)
Q Consensus 571 ~KvIIF~~~~~~~~~l~~~L~~~g~~~~ 598 (723)
.+++|..........+...|+..|+.+.
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~ 31 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGYEVE 31 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCceEE
Confidence 3667777777777777777776666554
No 408
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=23.14 E-value=42 Score=32.30 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=17.7
Q ss_pred cccCCCCCcHHHHHHHHHhcCc
Q 004925 53 ILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 53 iLad~~GlGKT~~al~~i~~~~ 74 (723)
+..---|.|||.+++.++..+.
T Consensus 32 v~s~kGGvGKTT~a~~LA~~la 53 (267)
T 3k9g_A 32 IASIKGGVGKSTSAIILATLLS 53 (267)
T ss_dssp ECCSSSSSCHHHHHHHHHHHHT
T ss_pred EEeCCCCchHHHHHHHHHHHHH
Confidence 4466789999999988887665
No 409
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=23.11 E-value=1.9e+02 Score=22.99 Aligned_cols=27 Identities=15% Similarity=0.333 Sum_probs=16.2
Q ss_pred eEEEEcccHhHHHHHHHHHHhCCCeEE
Q 004925 572 KGIVFSQFTSFLDLINYSLHKSGVNCV 598 (723)
Q Consensus 572 KvIIF~~~~~~~~~l~~~L~~~g~~~~ 598 (723)
+++|..........+...|...|+.+.
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~g~~v~ 30 (127)
T 2jba_A 4 RILVVEDEAPIREMVCFVLEQNGFQPV 30 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCceEE
Confidence 556666666666666666666555543
No 410
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=23.07 E-value=1.5e+02 Score=27.59 Aligned_cols=94 Identities=10% Similarity=0.095 Sum_probs=51.2
Q ss_pred CcchHHHHHHH-HHHHHHhhcCCceEEEEcccHhHHHHHHHHHHhC----CCeEEEeecCCCHHHHHHHHHhhcCCCCce
Q 004925 549 QSSTKIEALRE-EIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS----GVNCVQLVGSMSIPARDAAINRFTEDPDCK 623 (723)
Q Consensus 549 ~~s~Kl~~l~~-~l~~~~~~~~~~KvIIF~~~~~~~~~l~~~L~~~----g~~~~~i~g~~~~~~r~~~i~~F~~~~~~~ 623 (723)
.+++|--...- ++..+.....+.++||.+..+..+..+.+.++.. ++.+..+.|+.+... ....... +.+.
T Consensus 76 TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~-~~~~ 151 (237)
T 3bor_A 76 SGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQA-EAPH 151 (237)
T ss_dssp SSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-----------------CCCS
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhc-CCCC
Confidence 67888866443 3333322234568999999998877777777654 677778888765332 2223322 2466
Q ss_pred EEEEecCCCc-----ccccccccCEEEE
Q 004925 624 IFLMSLKAGG-----VALNLTVASHVFL 646 (723)
Q Consensus 624 vll~s~~~~~-----eGlnL~~a~~vI~ 646 (723)
+++++....- ..+++...+.+|+
T Consensus 152 Ilv~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 152 IVVGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp EEEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred EEEECHHHHHHHHHhCCcCcccCcEEEE
Confidence 7777643321 2345666666665
No 411
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=22.89 E-value=2.9e+02 Score=22.08 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=17.6
Q ss_pred ceEEEEcccHhHHHHHHHHHHhCCCe
Q 004925 571 AKGIVFSQFTSFLDLINYSLHKSGVN 596 (723)
Q Consensus 571 ~KvIIF~~~~~~~~~l~~~L~~~g~~ 596 (723)
.|++|.-........+...|+..|+.
T Consensus 6 ~~iLivdd~~~~~~~l~~~L~~~g~~ 31 (129)
T 3h1g_A 6 MKLLVVDDSSTMRRIIKNTLSRLGYE 31 (129)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred cEEEEEeCCHHHHHHHHHHHHHcCCc
Confidence 46677777677777777777766664
No 412
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=22.72 E-value=66 Score=27.53 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=30.4
Q ss_pred cCCceEEEEcccHhHHHHHHHHHHhCCCe-EEEeecCC
Q 004925 568 DGSAKGIVFSQFTSFLDLINYSLHKSGVN-CVQLVGSM 604 (723)
Q Consensus 568 ~~~~KvIIF~~~~~~~~~l~~~L~~~g~~-~~~i~g~~ 604 (723)
..+..+||||..-.........|...|+. +..+.|++
T Consensus 54 ~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 91 (141)
T 3ilm_A 54 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 91 (141)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHH
T ss_pred CCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHH
Confidence 34568999999877788889999999996 77888875
No 413
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=22.49 E-value=36 Score=35.69 Aligned_cols=24 Identities=29% Similarity=0.242 Sum_probs=18.7
Q ss_pred CcccCCCCCcHHHHHHHHHhcCcc
Q 004925 52 GILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
.+++-..|+|||.++..++..+..
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 466788999999998777766544
No 414
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=22.48 E-value=34 Score=33.84 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=16.4
Q ss_pred cCCCCCcHHHHHHHHHhcCcc
Q 004925 55 ADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 55 ad~~GlGKT~~al~~i~~~~~ 75 (723)
.-..|.|||.+++.++..+..
T Consensus 111 s~kgG~GKTtva~nLA~~lA~ 131 (299)
T 3cio_A 111 GATPDSGKTFVSSTLAAVIAQ 131 (299)
T ss_dssp ESSSSSCHHHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHh
Confidence 445799999999888877654
No 415
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=22.32 E-value=48 Score=33.59 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=19.4
Q ss_pred CcccCCCCCcHHHHHHHHHhcCccc
Q 004925 52 GILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
.+..---|.|||.+|.+++..+...
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~ 53 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEK 53 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHS
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHC
Confidence 4556788999999998887776543
No 416
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=22.16 E-value=33 Score=33.46 Aligned_cols=22 Identities=41% Similarity=0.454 Sum_probs=18.3
Q ss_pred CCCcccCCCCCcHHHHHHHHHh
Q 004925 50 RGGILADEMGMGKTIQAIALVL 71 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~ 71 (723)
+|.+|.-+.|+|||..+=+++.
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 6788999999999998866554
No 417
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=22.04 E-value=33 Score=36.04 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=27.8
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCccccCCCCccCCCCCCCCCCCCCCceEEEechhhH
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAV 108 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIv~P~~l~ 108 (723)
+++++.-.+|+|||...-.++......+ .+++|+=|+.=.
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~~g-------------------~~viv~Dpkge~ 93 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLLRG-------------------DRMVIVDPNGDM 93 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTT-------------------CEEEEEEETTHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCC-------------------CcEEEEeCCCch
Confidence 6778889999999998644554443321 477888887633
No 418
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=21.87 E-value=36 Score=34.70 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=20.8
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCcc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
+-.+|+-++|+|||..++.++.....
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~ 89 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQR 89 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44678899999999999888876543
No 419
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=21.85 E-value=3.5e+02 Score=22.59 Aligned_cols=27 Identities=19% Similarity=0.397 Sum_probs=18.1
Q ss_pred CceEEEEcccHhHHHHHHHHHHhCCCe
Q 004925 570 SAKGIVFSQFTSFLDLINYSLHKSGVN 596 (723)
Q Consensus 570 ~~KvIIF~~~~~~~~~l~~~L~~~g~~ 596 (723)
+-||+|--..+.....+...|+..|+.
T Consensus 12 ~~rILiVDD~~~~r~~l~~~L~~~G~~ 38 (134)
T 3to5_A 12 NMKILIVDDFSTMRRIVKNLLRDLGFN 38 (134)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCc
Confidence 346777767666777777777766664
No 420
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=21.76 E-value=3.4e+02 Score=24.57 Aligned_cols=97 Identities=9% Similarity=-0.135 Sum_probs=56.8
Q ss_pred CCceEEEEcccHhHHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcC--CCCceEEEEecCCCcccc-cccccCEEE
Q 004925 569 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE--DPDCKIFLMSLKAGGVAL-NLTVASHVF 645 (723)
Q Consensus 569 ~~~KvIIF~~~~~~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~--~~~~~vll~s~~~~~eGl-nL~~a~~vI 645 (723)
.+..++..+. ...+.+...+......++.++-.++..+=...++.... .++..+++++.....+-. ..-.+...=
T Consensus 31 ~~~~v~~~~~--~~~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~ 108 (225)
T 3klo_A 31 LPLALEITPF--SELWLEENKPESRSIQMLVIDYSRISDDVLTDYSSFKHISCPDAKEVIINCPQDIEHKLLFKWNNLAG 108 (225)
T ss_dssp SSEEEEEECG--GGHHHHTTCSGGGGCCEEEEEGGGCCHHHHHHHHHHHHHHCTTCEEEEEEECTTCCHHHHTTSTTEEE
T ss_pred CCceEEEEeC--CcHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHhhCCCCcEEEEECCcchhHHHHHHHhCCCE
Confidence 4444443322 23333434445556778888877776555556666554 456777777754432211 112233333
Q ss_pred EECCCCChhhHHHHHHhhhhcC
Q 004925 646 LMDPWWNPAVEQQAQDRIHRIG 667 (723)
Q Consensus 646 ~~d~~wn~~~~~Q~iGRi~R~G 667 (723)
++.-|+++..+.+++.++.|-+
T Consensus 109 ~l~Kp~~~~~L~~~i~~~~~~~ 130 (225)
T 3klo_A 109 VFYIDDDMDTLIKGMSKILQDE 130 (225)
T ss_dssp EEETTCCHHHHHHHHHHHHTTC
T ss_pred EEecCCCHHHHHHHHHHHHCCC
Confidence 5566889999999999998754
No 421
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=21.72 E-value=24 Score=35.60 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=20.3
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcC
Q 004925 50 RGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
++.+|..++|+|||..|-++....
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHS
T ss_pred ceEEEECCCCccHHHHHHHHHHhC
Confidence 678999999999999987777654
No 422
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=21.69 E-value=38 Score=31.13 Aligned_cols=27 Identities=22% Similarity=0.036 Sum_probs=22.1
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCccc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
+..++--..|-|||..|++++......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~ 55 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH 55 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 556778899999999999988876554
No 423
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=21.41 E-value=2.7e+02 Score=22.65 Aligned_cols=27 Identities=7% Similarity=0.202 Sum_probs=14.9
Q ss_pred eEEEEcccHhHHHHHHHHHHhCCCeEE
Q 004925 572 KGIVFSQFTSFLDLINYSLHKSGVNCV 598 (723)
Q Consensus 572 KvIIF~~~~~~~~~l~~~L~~~g~~~~ 598 (723)
+++|.-........+...|+..|+.+.
T Consensus 6 ~iLivdd~~~~~~~l~~~L~~~g~~v~ 32 (136)
T 3t6k_A 6 TLLIVDDDDTVAEMLELVLRGAGYEVR 32 (136)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEE
Confidence 555555555555555555555555443
No 424
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=21.33 E-value=1.6e+02 Score=32.36 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=20.7
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcCc
Q 004925 50 RGGILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~~ 74 (723)
...+|.-+.|+|||..+-+++....
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 6778999999999999877776553
No 425
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=21.27 E-value=72 Score=37.31 Aligned_cols=94 Identities=11% Similarity=0.042 Sum_probs=54.0
Q ss_pred cCcchHHHHHHHHHHHHHhhcC---CceEEEEcccHhHHHHHHHHHHh----CCCeEEEeecCCCHHHHHHHHHhhcCCC
Q 004925 548 FQSSTKIEALREEIRFMVERDG---SAKGIVFSQFTSFLDLINYSLHK----SGVNCVQLVGSMSIPARDAAINRFTEDP 620 (723)
Q Consensus 548 ~~~s~Kl~~l~~~l~~~~~~~~---~~KvIIF~~~~~~~~~l~~~L~~----~g~~~~~i~g~~~~~~r~~~i~~F~~~~ 620 (723)
..+++|.-...-.+...+...+ +.++||.+.....+..+...++. .++.+..++|+.+...+...+..
T Consensus 271 ~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~----- 345 (936)
T 4a2w_A 271 PTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----- 345 (936)
T ss_dssp CTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHH-----
T ss_pred CCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhcc-----
Confidence 4577888776666655544333 67899999988766655555544 48999999999864432211111
Q ss_pred CceEEEEecCCCccc-----c-cccccCEEEE
Q 004925 621 DCKIFLMSLKAGGVA-----L-NLTVASHVFL 646 (723)
Q Consensus 621 ~~~vll~s~~~~~eG-----l-nL~~a~~vI~ 646 (723)
++.|+|+|+..+..- + .+...+++|+
T Consensus 346 ~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liVi 377 (936)
T 4a2w_A 346 DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (936)
T ss_dssp HCSEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred CCCEEEecHHHHHHHHHcCccccccCCCEEEE
Confidence 244666665544321 2 3445566655
No 426
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=21.22 E-value=39 Score=32.83 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=16.4
Q ss_pred cCCCCCcHHHHHHHHHhcCcc
Q 004925 55 ADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 55 ad~~GlGKT~~al~~i~~~~~ 75 (723)
.-..|.|||.+++.++..+..
T Consensus 89 s~kgG~GKTt~a~nLA~~lA~ 109 (271)
T 3bfv_A 89 SEAPGAGKSTIAANLAVAYAQ 109 (271)
T ss_dssp CSSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHh
Confidence 345799999999888777654
No 427
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=21.18 E-value=3.3e+02 Score=28.53 Aligned_cols=85 Identities=16% Similarity=0.143 Sum_probs=64.8
Q ss_pred ceEEEEcccHhHHHHHHHHHHhCCC--eEEEeecCCCHHHHHHHHHhhcCCCCceEEEEecCCCcccccccccCEEEEEC
Q 004925 571 AKGIVFSQFTSFLDLINYSLHKSGV--NCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMD 648 (723)
Q Consensus 571 ~KvIIF~~~~~~~~~l~~~L~~~g~--~~~~i~g~~~~~~r~~~i~~F~~~~~~~vll~s~~~~~eGlnL~~a~~vI~~d 648 (723)
.++=|++|+-.....+..++...|+ ..+.-.|+...-.-...++.|.+|++.+++++- ++
T Consensus 150 G~v~~vsqSG~~~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~d~l~~~~~D~~t~~I~l~------------------~E 211 (457)
T 2csu_A 150 GNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMADVDFAELMEYLADTEEDKAIALY------------------IE 211 (457)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHTTCEESEEEECTTCCSSCHHHHHHHHTTCSSCCEEEEE------------------ES
T ss_pred CCEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCCcCCCCHHHHHHHHhcCCCCCEEEEE------------------Ee
Confidence 4788999999999999999988855 456666766666778899999998888877655 34
Q ss_pred CCCChhhHHHHHHhhhhcCCcccEEEEE
Q 004925 649 PWWNPAVEQQAQDRIHRIGQYKPIRIVR 676 (723)
Q Consensus 649 ~~wn~~~~~Q~iGRi~R~Gq~~~V~v~~ 676 (723)
..-++..+..+.-|+.| .|+|.+|.
T Consensus 212 ~i~~~~~f~~~a~~~~~---~KPVv~~k 236 (457)
T 2csu_A 212 GVRNGKKFMEVAKRVTK---KKPIIALK 236 (457)
T ss_dssp CCSCHHHHHHHHHHHHH---HSCEEEEE
T ss_pred cCCCHHHHHHHHHHhcC---CCCEEEEE
Confidence 33467888888877753 67887765
No 428
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=21.08 E-value=43 Score=35.18 Aligned_cols=26 Identities=31% Similarity=0.144 Sum_probs=19.7
Q ss_pred CCcccCCCCCcHHHHHHHHHhcCccc
Q 004925 51 GGILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 51 g~iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
..+++-..|+|||.++..++..+...
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 34455679999999998888776553
No 429
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=21.05 E-value=31 Score=36.33 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=22.9
Q ss_pred HHHHHHHH----HHHhccCCCCCCcccC-CCCCcHHHHHHH
Q 004925 33 YQKEWLAW----ALKQEESAIRGGILAD-EMGMGKTIQAIA 68 (723)
Q Consensus 33 ~Q~~~~~~----~~~~~~~~~~g~iLad-~~GlGKT~~al~ 68 (723)
-|.+.... ++...-.++.++|+|- .+|+|||+|+.+
T Consensus 116 sQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G 156 (443)
T 2owm_A 116 TQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMG 156 (443)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTC
T ss_pred CHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeec
Confidence 35554433 3333335667788865 589999999964
No 430
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=21.03 E-value=38 Score=30.31 Aligned_cols=23 Identities=30% Similarity=0.205 Sum_probs=18.1
Q ss_pred CCCcccCCCCCcHHHHHHHHHhc
Q 004925 50 RGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~ 72 (723)
+..+|.-.+|+|||..+-.+...
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 45678889999999998766653
No 431
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=20.94 E-value=44 Score=32.84 Aligned_cols=23 Identities=13% Similarity=0.080 Sum_probs=17.6
Q ss_pred ccCCCCCcHHHHHHHHHhcCccc
Q 004925 54 LADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 54 Lad~~GlGKT~~al~~i~~~~~~ 76 (723)
..-..|.|||.+++.++..+...
T Consensus 98 ts~kgG~GKTtva~nLA~~lA~~ 120 (286)
T 3la6_A 98 TGVSPSIGMTFVCANLAAVISQT 120 (286)
T ss_dssp EESSSSSSHHHHHHHHHHHHHTT
T ss_pred ECCCCCCcHHHHHHHHHHHHHhC
Confidence 35567999999998888776543
No 432
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=20.77 E-value=45 Score=35.20 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=19.9
Q ss_pred CcccCCCCCcHHHHHHHHHhcCcc
Q 004925 52 GILADEMGMGKTIQAIALVLAKRE 75 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~~ 75 (723)
.+|+..+|+|||..++.++.....
T Consensus 200 iiIaG~pG~GKTtlal~ia~~~a~ 223 (444)
T 3bgw_A 200 VLIAARPSMGKTAFALKQAKNMSD 223 (444)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCChHHHHHHHHHHHHH
Confidence 588999999999999888776543
No 433
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=20.59 E-value=58 Score=31.98 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=19.7
Q ss_pred CCCcccCCCCCcHHHHHHHHHhcC
Q 004925 50 RGGILADEMGMGKTIQAIALVLAK 73 (723)
Q Consensus 50 ~g~iLad~~GlGKT~~al~~i~~~ 73 (723)
.+.+|..+.|+|||..+-.++...
T Consensus 39 ~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 39 PHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECcCCcCHHHHHHHHHHHh
Confidence 457899999999999987777653
No 434
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=20.59 E-value=2.4e+02 Score=21.96 Aligned_cols=45 Identities=7% Similarity=-0.119 Sum_probs=34.4
Q ss_pred ceEEEEcccHhH-HHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHh
Q 004925 571 AKGIVFSQFTSF-LDLINYSLHKSGVNCVQLVGSMSIPARDAAINR 615 (723)
Q Consensus 571 ~KvIIF~~~~~~-~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~ 615 (723)
.+|.||+..... -....++|.+.|+++..++=...++.++.+.+.
T Consensus 4 a~I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~ 49 (92)
T 2lqo_A 4 AALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSV 49 (92)
T ss_dssp SCEEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHH
T ss_pred CcEEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHH
Confidence 478999886643 667888899999999998877776666655544
No 435
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=20.54 E-value=57 Score=28.51 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=30.0
Q ss_pred CceEEEEcccH---------hHHHHHHHHHHhCCCeEEEeecCC
Q 004925 570 SAKGIVFSQFT---------SFLDLINYSLHKSGVNCVQLVGSM 604 (723)
Q Consensus 570 ~~KvIIF~~~~---------~~~~~l~~~L~~~g~~~~~i~g~~ 604 (723)
+..|||||... .....+...|...|+.+..+.|++
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~ 136 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGL 136 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcH
Confidence 56899999987 467888999999999999999986
No 436
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=20.29 E-value=90 Score=31.22 Aligned_cols=40 Identities=28% Similarity=0.282 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhc---cCCCCCCcccCCCCCcHHHHHHHHHh
Q 004925 32 RYQKEWLAWALKQE---ESAIRGGILADEMGMGKTIQAIALVL 71 (723)
Q Consensus 32 p~Q~~~~~~~~~~~---~~~~~g~iLad~~GlGKT~~al~~i~ 71 (723)
.+.+..+...+... .......+|.-++|+|||..+=.++.
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 45556665555432 12225678899999999988755554
No 437
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=20.25 E-value=69 Score=34.41 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhccCCCCCCcccCCCCCcHHHHHHHHHhc
Q 004925 32 RYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLA 72 (723)
Q Consensus 32 p~Q~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~al~~i~~ 72 (723)
+.++..+.+.+.. + .+.++.-++|+|||.+.-+++..
T Consensus 247 ~~~l~~l~~~v~~---g-~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 247 SGVLAYLWLAIEH---K-FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp HHHHHHHHHHHHT---T-CCEEEEESTTSSHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhC---C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 4445555554442 2 45788899999999877555443
No 438
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=20.24 E-value=44 Score=33.92 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=18.1
Q ss_pred CcccCCCCCcHHHHHHHHHhcCc
Q 004925 52 GILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 52 ~iLad~~GlGKT~~al~~i~~~~ 74 (723)
.++..--|.|||.+|.+++..+.
T Consensus 21 ~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 21 IFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEeCCCCCcHHHHHHHHHHHHH
Confidence 45566789999999988877665
No 439
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=20.08 E-value=3.8e+02 Score=23.48 Aligned_cols=46 Identities=7% Similarity=0.062 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhCCCeEEEeecCCCHHHHHHHHHhhcC----CCCceEEEEe
Q 004925 582 FLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE----DPDCKIFLMS 628 (723)
Q Consensus 582 ~~~~l~~~L~~~g~~~~~i~g~~~~~~r~~~i~~F~~----~~~~~vll~s 628 (723)
-++.|.+.|+..|+.+..+ ...+..+-...++.|.. +.++.|+++-
T Consensus 56 D~~~L~~~f~~LgF~V~~~-~dlt~~em~~~l~~~~~~dh~~~dc~vv~il 105 (164)
T 1qtn_A 56 DAGALTTTFEELHFEIKPH-DDCTVEQIYEILKIYQLMDHSNMDCFICCIL 105 (164)
T ss_dssp HHHHHHHHHHHTTCEEEEE-ESCCHHHHHHHHHHHHHSCCTTCSCEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEe-cCCCHHHHHHHHHHHHHhhccCCCEEEEEeC
Confidence 3678999999999997554 56678888899999864 2445554433
No 440
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=20.06 E-value=39 Score=34.98 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=17.1
Q ss_pred cccCCCCCcHHHHHHHHHhcCc
Q 004925 53 ILADEMGMGKTIQAIALVLAKR 74 (723)
Q Consensus 53 iLad~~GlGKT~~al~~i~~~~ 74 (723)
+..---|.|||.+++.++..+.
T Consensus 113 v~s~KGGvGKTT~a~nLA~~La 134 (398)
T 3ez2_A 113 ISNLKGGVSKTVSTVSLAHAMR 134 (398)
T ss_dssp ECCSSSSSSHHHHHHHHHHHHH
T ss_pred EEeCCCCccHHHHHHHHHHHHH
Confidence 4456788999999988877654
No 441
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=20.05 E-value=43 Score=32.74 Aligned_cols=24 Identities=29% Similarity=0.213 Sum_probs=18.1
Q ss_pred cccCCCCCcHHHHHHHHHhcCccc
Q 004925 53 ILADEMGMGKTIQAIALVLAKREI 76 (723)
Q Consensus 53 iLad~~GlGKT~~al~~i~~~~~~ 76 (723)
+..-.-|.|||.+++.++..+...
T Consensus 9 v~s~KGGvGKTT~a~nLA~~La~~ 32 (286)
T 2xj4_A 9 VGNEKGGAGKSTIAVHLVTALLYG 32 (286)
T ss_dssp ECCSSSCTTHHHHHHHHHHHHHHT
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHC
Confidence 334567999999998888776543
No 442
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=20.01 E-value=39 Score=35.96 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=19.1
Q ss_pred CCCCcccCCCCCcHHHHHHHHHh
Q 004925 49 IRGGILADEMGMGKTIQAIALVL 71 (723)
Q Consensus 49 ~~g~iLad~~GlGKT~~al~~i~ 71 (723)
.+|.+|.-++|+|||..+=+++.
T Consensus 49 p~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 36789999999999998866654
Done!