Query 004926
Match_columns 723
No_of_seqs 274 out of 1265
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 15:10:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004926.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004926hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05505 Bromo_WSTF_like Bromod 99.9 9.4E-25 2E-29 196.2 10.7 96 3-98 1-96 (97)
2 cd05496 Bromo_WDR9_II Bromodom 99.9 4.4E-24 9.5E-29 198.6 12.5 105 3-107 6-111 (119)
3 cd05509 Bromo_gcn5_like Bromod 99.9 3.9E-24 8.4E-29 191.9 11.3 101 2-102 1-101 (101)
4 cd05495 Bromo_cbp_like Bromodo 99.9 7.9E-24 1.7E-28 193.4 12.1 100 4-103 5-107 (108)
5 cd05497 Bromo_Brdt_I_like Brom 99.9 6.4E-24 1.4E-28 193.8 11.3 97 5-101 8-106 (107)
6 cd05503 Bromo_BAZ2A_B_like Bro 99.9 7E-24 1.5E-28 189.8 10.8 97 3-99 1-97 (97)
7 cd05504 Bromo_Acf1_like Bromod 99.9 8E-24 1.7E-28 195.4 11.2 100 3-102 13-112 (115)
8 cd05507 Bromo_brd8_like Bromod 99.9 1.1E-23 2.4E-28 191.0 11.3 99 3-101 4-102 (104)
9 cd05513 Bromo_brd7_like Bromod 99.9 1.8E-23 3.8E-28 188.4 10.7 96 2-97 1-96 (98)
10 cd05502 Bromo_tif1_like Bromod 99.9 3.7E-23 8.1E-28 188.5 12.2 100 3-103 5-107 (109)
11 cd05508 Bromo_RACK7 Bromodomai 99.9 3.4E-23 7.4E-28 186.9 10.8 94 4-98 5-98 (99)
12 cd05511 Bromo_TFIID Bromodomai 99.9 6.9E-23 1.5E-27 188.3 12.9 107 5-111 3-109 (112)
13 cd05512 Bromo_brd1_like Bromod 99.9 3.4E-23 7.3E-28 186.4 9.7 95 2-96 1-95 (98)
14 cd05510 Bromo_SPT7_like Bromod 99.9 6.6E-23 1.4E-27 188.8 11.4 100 3-102 8-109 (112)
15 cd05499 Bromo_BDF1_2_II Bromod 99.9 7.5E-23 1.6E-27 184.2 10.9 97 3-99 1-102 (102)
16 cd05506 Bromo_plant1 Bromodoma 99.9 1.4E-22 3.1E-27 180.9 11.1 96 4-99 2-99 (99)
17 cd05498 Bromo_Brdt_II_like Bro 99.9 1.4E-22 3E-27 182.1 11.0 97 3-99 1-102 (102)
18 cd05516 Bromo_SNF2L2 Bromodoma 99.9 1.3E-22 2.7E-27 185.1 10.6 98 4-101 3-106 (107)
19 cd05501 Bromo_SP100C_like Brom 99.9 3.2E-22 6.8E-27 181.9 12.1 97 3-102 3-99 (102)
20 cd05500 Bromo_BDF1_2_I Bromodo 99.9 3.4E-22 7.4E-27 180.6 11.2 95 4-98 6-102 (103)
21 cd05528 Bromo_AAA Bromodomain; 99.9 6.1E-22 1.3E-26 182.3 11.5 99 4-102 5-107 (112)
22 cd05524 Bromo_polybromo_I Brom 99.9 7.9E-22 1.7E-26 181.6 11.2 102 2-103 2-109 (113)
23 cd05519 Bromo_SNF2 Bromodomain 99.9 7.1E-22 1.5E-26 178.5 10.5 96 4-99 2-103 (103)
24 cd05515 Bromo_polybromo_V Brom 99.9 1.5E-21 3.2E-26 177.4 10.9 96 4-99 2-103 (105)
25 cd05517 Bromo_polybromo_II Bro 99.9 2.1E-21 4.6E-26 176.2 10.2 94 4-97 2-101 (103)
26 KOG1474 Transcription initiati 99.9 9.2E-22 2E-26 226.0 9.6 105 4-108 224-330 (640)
27 cd05518 Bromo_polybromo_IV Bro 99.9 2.3E-21 5.1E-26 176.0 10.1 95 4-98 2-102 (103)
28 cd05520 Bromo_polybromo_III Br 99.8 3.4E-21 7.5E-26 174.8 10.1 93 6-98 4-102 (103)
29 cd05525 Bromo_ASH1 Bromodomain 99.8 5.8E-21 1.3E-25 174.3 10.8 95 4-98 4-104 (106)
30 smart00297 BROMO bromo domain. 99.8 7.1E-21 1.5E-25 169.9 11.0 98 4-101 9-106 (107)
31 cd05529 Bromo_WDR9_I_like Brom 99.8 1E-20 2.2E-25 177.8 11.9 97 4-100 26-126 (128)
32 cd05522 Bromo_Rsc1_2_II Bromod 99.8 1.9E-20 4.2E-25 170.0 10.6 97 2-98 1-103 (104)
33 cd04369 Bromodomain Bromodomai 99.8 5.2E-20 1.1E-24 158.6 10.0 95 4-98 2-98 (99)
34 PF00439 Bromodomain: Bromodom 99.8 5.3E-20 1.2E-24 157.7 9.4 84 7-90 1-84 (84)
35 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 7.1E-20 1.5E-24 167.3 10.8 94 4-99 3-102 (106)
36 KOG0955 PHD finger protein BR1 99.8 3.2E-20 6.9E-25 219.5 8.1 289 1-314 564-865 (1051)
37 cd05492 Bromo_ZMYND11 Bromodom 99.8 1.3E-18 2.9E-23 159.9 11.8 98 6-103 4-107 (109)
38 cd05526 Bromo_polybromo_VI Bro 99.7 8.5E-17 1.9E-21 148.3 10.8 98 4-103 5-108 (110)
39 COG5076 Transcription factor i 99.6 7E-16 1.5E-20 167.1 9.5 102 4-105 144-251 (371)
40 KOG1245 Chromatin remodeling c 99.6 3.3E-15 7.2E-20 182.8 8.1 95 7-102 1306-1400(1404)
41 KOG1472 Histone acetyltransfer 99.3 9.9E-13 2.1E-17 151.5 6.3 99 5-103 609-707 (720)
42 cd05494 Bromodomain_1 Bromodom 99.0 3.7E-10 8.1E-15 104.8 4.8 76 4-79 2-89 (114)
43 KOG0008 Transcription initiati 98.9 1.6E-09 3.5E-14 129.9 7.2 102 7-108 1387-1488(1563)
44 KOG1827 Chromatin remodeling c 98.9 2.3E-09 5E-14 122.6 7.6 100 1-100 51-156 (629)
45 KOG0386 Chromatin remodeling c 98.9 2.4E-09 5.1E-14 126.2 7.0 99 5-103 1027-1131(1157)
46 KOG0008 Transcription initiati 98.8 9E-09 1.9E-13 123.7 8.9 149 5-164 1264-1412(1563)
47 cd05491 Bromo_TBP7_like Bromod 98.8 6.6E-09 1.4E-13 97.3 4.4 44 39-82 61-104 (119)
48 KOG1828 IRF-2-binding protein 98.4 6.5E-08 1.4E-12 105.0 -0.1 99 1-99 18-116 (418)
49 KOG1472 Histone acetyltransfer 98.4 2.8E-07 6.1E-12 107.3 4.7 77 17-93 301-378 (720)
50 KOG1828 IRF-2-binding protein 98.0 4.1E-06 8.9E-11 91.4 4.0 88 5-93 211-298 (418)
51 KOG1474 Transcription initiati 97.8 4.1E-06 8.9E-11 97.8 0.4 90 13-102 3-94 (640)
52 COG5076 Transcription factor i 96.4 0.00096 2.1E-08 73.2 0.9 92 11-102 272-363 (371)
53 cd05493 Bromo_ALL-1 Bromodomai 95.2 0.023 5.1E-07 54.8 4.4 64 42-105 59-122 (131)
54 KOG0644 Uncharacterized conser 83.3 0.6 1.3E-05 56.4 1.8 60 38-97 1049-1108(1113)
55 KOG0732 AAA+-type ATPase conta 77.5 1.9 4.1E-05 53.8 3.4 63 19-81 532-601 (1080)
56 KOG1827 Chromatin remodeling c 64.3 1.3 2.8E-05 52.5 -1.9 75 21-95 214-288 (629)
57 KOG0644 Uncharacterized conser 50.0 4.5 9.8E-05 49.4 -0.6 71 23-94 86-186 (1113)
58 cd05522 Bromo_Rsc1_2_II Bromod 46.1 5.6 0.00012 36.6 -0.5 32 196-228 1-32 (104)
59 TIGR02606 antidote_CC2985 puta 35.5 57 0.0012 28.2 4.1 27 46-72 12-38 (69)
60 PF03693 RHH_2: Uncharacterise 25.6 83 0.0018 28.1 3.5 26 46-71 15-40 (80)
No 1
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=9.4e-25 Score=196.17 Aligned_cols=96 Identities=32% Similarity=0.449 Sum_probs=93.4
Q ss_pred cHHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCC
Q 004926 3 DKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDT 82 (723)
Q Consensus 3 dkK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS 82 (723)
|.++|..||+.|++++.+++|..||++..+||||++|++||||+||++||+++.|.++++|.+||.|||.||+.||+++|
T Consensus 1 ~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s 80 (97)
T cd05505 1 ELQKCEEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGS 80 (97)
T ss_pred CHHHHHHHHHHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 004926 83 VYHKQARAIQELAKKK 98 (723)
Q Consensus 83 ~Iyk~A~~Le~lfek~ 98 (723)
.+|.+|..|++.|...
T Consensus 81 ~i~~~a~~le~~f~~~ 96 (97)
T cd05505 81 YVLSCMRKTEQCCVNL 96 (97)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998764
No 2
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=4.4e-24 Score=198.56 Aligned_cols=105 Identities=25% Similarity=0.424 Sum_probs=100.7
Q ss_pred cHHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCC-C
Q 004926 3 DKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP-D 81 (723)
Q Consensus 3 dkK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~p-d 81 (723)
.++.|..||+.|++++.+++|.+||++..+||||+||++||||+||++||.++.|.++++|..||+|||.||+.||++ +
T Consensus 6 w~~~c~~il~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~~~~ 85 (119)
T cd05496 6 WKKQCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTPNKR 85 (119)
T ss_pred HHHHHHHHHHHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999999985 8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004926 82 TVYHKQARAIQELAKKKFHRLRAGIE 107 (723)
Q Consensus 82 S~Iyk~A~~Le~lfek~~kkL~~eie 107 (723)
+.+|.+|..|+..|++.+.++...+.
T Consensus 86 s~i~~~a~~L~~~F~~~~~~l~~~~~ 111 (119)
T cd05496 86 SRIYSMTLRLSALFEEHIKKIISDWK 111 (119)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987664
No 3
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3.9e-24 Score=191.86 Aligned_cols=101 Identities=43% Similarity=0.671 Sum_probs=98.4
Q ss_pred CcHHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCC
Q 004926 2 PDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 81 (723)
Q Consensus 2 PdkK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pd 81 (723)
|+++.|..||+.|++++.+++|.+||++..+|+||++|++||||.||++||+++.|.++++|..||+|||+||+.||+++
T Consensus 1 ~~~~~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~ 80 (101)
T cd05509 1 PLYTQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPD 80 (101)
T ss_pred ChHHHHHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 004926 82 TVYHKQARAIQELAKKKFHRL 102 (723)
Q Consensus 82 S~Iyk~A~~Le~lfek~~kkL 102 (723)
|.++.+|..|++.|++.++++
T Consensus 81 s~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 81 TEYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred CHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999988763
No 4
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=7.9e-24 Score=193.38 Aligned_cols=100 Identities=33% Similarity=0.584 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHcc-CCCCcccCCCCCC--CCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCC
Q 004926 4 KKSLELILDKLQKK-DTYGVYAEPVDPE--ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP 80 (723)
Q Consensus 4 kK~Le~ILd~L~k~-d~s~pF~ePVd~e--elPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~p 80 (723)
+++|..|+++|+++ +.+++|.+||++. .+||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.||++
T Consensus 5 ~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 84 (108)
T cd05495 5 RQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLYNRK 84 (108)
T ss_pred HHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 58899999999999 9999999999987 69999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 004926 81 DTVYHKQARAIQELAKKKFHRLR 103 (723)
Q Consensus 81 dS~Iyk~A~~Le~lfek~~kkL~ 103 (723)
+|.+|.+|..|++.|++.++.+.
T Consensus 85 ~s~i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 85 TSRVYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999987764
No 5
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=6.4e-24 Score=193.80 Aligned_cols=97 Identities=32% Similarity=0.491 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHccCCCCcccCCCCCC--CCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCC
Q 004926 5 KSLELILDKLQKKDTYGVYAEPVDPE--ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDT 82 (723)
Q Consensus 5 K~Le~ILd~L~k~d~s~pF~ePVd~e--elPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS 82 (723)
-.++.||+.|++++.+++|.+|||+. .+||||++|++||||+||++||+++.|.++++|++||+|||.||+.||+++|
T Consensus 8 ~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s 87 (107)
T cd05497 8 YLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNKPGD 87 (107)
T ss_pred HHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 35678899999999999999999987 6999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004926 83 VYHKQARAIQELAKKKFHR 101 (723)
Q Consensus 83 ~Iyk~A~~Le~lfek~~kk 101 (723)
.+|.+|..|+++|++.+..
T Consensus 88 ~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 88 DVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 9999999999999998864
No 6
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=7e-24 Score=189.78 Aligned_cols=97 Identities=31% Similarity=0.618 Sum_probs=94.1
Q ss_pred cHHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCC
Q 004926 3 DKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDT 82 (723)
Q Consensus 3 dkK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS 82 (723)
|...|+.||+.|++++.+++|..||++..+|+||++|++||||+||++||+++.|.++++|..||.|||.||+.||++++
T Consensus 1 ~~~~c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s 80 (97)
T cd05503 1 DLALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDS 80 (97)
T ss_pred CHHHHHHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004926 83 VYHKQARAIQELAKKKF 99 (723)
Q Consensus 83 ~Iyk~A~~Le~lfek~~ 99 (723)
.++.+|..|++.|++.|
T Consensus 81 ~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 81 EVGRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999999998764
No 7
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=8e-24 Score=195.38 Aligned_cols=100 Identities=32% Similarity=0.533 Sum_probs=97.6
Q ss_pred cHHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCC
Q 004926 3 DKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDT 82 (723)
Q Consensus 3 dkK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS 82 (723)
+.+.|..||+.|++++.+++|.+||+...+||||++|++||||+||++||+++.|.++++|+.||.|||.||+.||+++|
T Consensus 13 ~~~~c~~il~~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~~~s 92 (115)
T cd05504 13 NLSALEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNPEHT 92 (115)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004926 83 VYHKQARAIQELAKKKFHRL 102 (723)
Q Consensus 83 ~Iyk~A~~Le~lfek~~kkL 102 (723)
.+|.+|..|+++|++.++++
T Consensus 93 ~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 93 SVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999876
No 8
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.1e-23 Score=191.00 Aligned_cols=99 Identities=30% Similarity=0.504 Sum_probs=95.4
Q ss_pred cHHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCC
Q 004926 3 DKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDT 82 (723)
Q Consensus 3 dkK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS 82 (723)
.++.|..|++.|++++.+++|.+||+.+.+||||++|++||||+||++||+++.|.+++||.+||.|||.||+.||++++
T Consensus 4 ~~~~~~~il~~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s 83 (104)
T cd05507 4 WKKAILLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSSDH 83 (104)
T ss_pred HHHHHHHHHHHHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004926 83 VYHKQARAIQELAKKKFHR 101 (723)
Q Consensus 83 ~Iyk~A~~Le~lfek~~kk 101 (723)
.+|.+|..|++.+.+.+..
T Consensus 84 ~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 84 DVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999998887754
No 9
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.8e-23 Score=188.44 Aligned_cols=96 Identities=42% Similarity=0.766 Sum_probs=92.4
Q ss_pred CcHHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCC
Q 004926 2 PDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 81 (723)
Q Consensus 2 PdkK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pd 81 (723)
|.++.|+.||+.|++++.+++|..||+...+||||++|++||||+||++||+++.|.++++|+.||+|||.||+.||+++
T Consensus 1 ~l~~~l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 80 (98)
T cd05513 1 PLQKALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPD 80 (98)
T ss_pred CHHHHHHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 004926 82 TVYHKQARAIQELAKK 97 (723)
Q Consensus 82 S~Iyk~A~~Le~lfek 97 (723)
|.+|++|..|.+...+
T Consensus 81 s~~~~~A~~L~~~~~~ 96 (98)
T cd05513 81 TIYYKAAKKLLHSGMK 96 (98)
T ss_pred CHHHHHHHHHHHhhhh
Confidence 9999999999876554
No 10
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=3.7e-23 Score=188.54 Aligned_cols=100 Identities=28% Similarity=0.520 Sum_probs=96.4
Q ss_pred cHHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhc---CCCCCHHHHHHHHHHHHHhhhhcCC
Q 004926 3 DKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLAN---GSYSSLDQFESDVFLICTNAMQYNA 79 (723)
Q Consensus 3 dkK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkn---g~Y~SieEF~~DV~LIf~NA~~YN~ 79 (723)
++++|+.||.+|++++.+++|.+||++ .+|+||++|++||||+||++||++ +.|.++++|.+||+|||+||+.||+
T Consensus 5 ~~~~c~~il~~l~~~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~yN~ 83 (109)
T cd05502 5 DQRKCERLLLELYCHELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFNE 83 (109)
T ss_pred HHHHHHHHHHHHHhCCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 578999999999999999999999998 899999999999999999999998 5999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q 004926 80 PDTVYHKQARAIQELAKKKFHRLR 103 (723)
Q Consensus 80 pdS~Iyk~A~~Le~lfek~~kkL~ 103 (723)
++|.++.+|..|++.|++.+.++-
T Consensus 84 ~~s~i~~~a~~l~~~f~~~~~~~~ 107 (109)
T cd05502 84 EDSEVAQAGKELELFFEEQLKEIL 107 (109)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999998763
No 11
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=3.4e-23 Score=186.90 Aligned_cols=94 Identities=31% Similarity=0.544 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCH
Q 004926 4 KKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTV 83 (723)
Q Consensus 4 kK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS~ 83 (723)
...|+.+++.|+ ++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||+.||+++|.
T Consensus 5 ~~~L~~~~~~~~-~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~s~ 83 (99)
T cd05508 5 SKLLKFALERMK-QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGDHK 83 (99)
T ss_pred HHHHHHHHHHHh-CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 357888999988 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 004926 84 YHKQARAIQELAKKK 98 (723)
Q Consensus 84 Iyk~A~~Le~lfek~ 98 (723)
++.+|+.|.+.|+..
T Consensus 84 i~~~A~~l~~~~~~e 98 (99)
T cd05508 84 LTQAAKAIVKICEQE 98 (99)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988764
No 12
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=6.9e-23 Score=188.27 Aligned_cols=107 Identities=34% Similarity=0.591 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCHH
Q 004926 5 KSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVY 84 (723)
Q Consensus 5 K~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS~I 84 (723)
-.|+.|+++|++++.+++|..||++..+|+||++|++||||.+|++||+++.|.++++|..||+|||+||+.||+++|.+
T Consensus 3 ~~l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i 82 (112)
T cd05511 3 FILDEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSVY 82 (112)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 004926 85 HKQARAIQELAKKKFHRLRAGIERSEK 111 (723)
Q Consensus 85 yk~A~~Le~lfek~~kkL~~eie~~E~ 111 (723)
+.+|..|.+.|++.+..+.+++...|.
T Consensus 83 ~~~A~~l~~~~~~~~~~~~~~~~~~~~ 109 (112)
T cd05511 83 TKKAKEMLELAEELLAEREEKLTQLEK 109 (112)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999999888776554
No 13
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=3.4e-23 Score=186.35 Aligned_cols=95 Identities=44% Similarity=0.733 Sum_probs=91.8
Q ss_pred CcHHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCC
Q 004926 2 PDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 81 (723)
Q Consensus 2 PdkK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pd 81 (723)
|....|+.+|+.|+.++.+++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||+++
T Consensus 1 p~~~~l~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 80 (98)
T cd05512 1 PLEVLLRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKD 80 (98)
T ss_pred CHHHHHHHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 004926 82 TVYHKQARAIQELAK 96 (723)
Q Consensus 82 S~Iyk~A~~Le~lfe 96 (723)
|.+|++|..|++..+
T Consensus 81 s~~~~~A~~l~~~~~ 95 (98)
T cd05512 81 TIFYRAAVRLRDQGG 95 (98)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999988654
No 14
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=6.6e-23 Score=188.79 Aligned_cols=100 Identities=30% Similarity=0.462 Sum_probs=94.9
Q ss_pred cHHHHHHHHHHHHcc-CCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCC
Q 004926 3 DKKSLELILDKLQKK-DTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 81 (723)
Q Consensus 3 dkK~Le~ILd~L~k~-d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pd 81 (723)
.++.|..||+.|+++ +.+++|.+||++..+||||++|++||||+||++||+++.|.++++|..||.|||.||+.||+++
T Consensus 8 ~~~~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~yN~~~ 87 (112)
T cd05510 8 FYESLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYNSDP 87 (112)
T ss_pred HHHHHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 468999999999999 8999999999999999999999999999999999999999999999999999999999999976
Q ss_pred C-HHHHHHHHHHHHHHHHHHHH
Q 004926 82 T-VYHKQARAIQELAKKKFHRL 102 (723)
Q Consensus 82 S-~Iyk~A~~Le~lfek~~kkL 102 (723)
+ .++.+|..|++.|++.+..+
T Consensus 88 s~~~~~~A~~l~~~~~~~~~~~ 109 (112)
T cd05510 88 SHPLRRHANFMKKKAEHLLKLI 109 (112)
T ss_pred CHHHHHHHHHHHHHHHHHHHHC
Confidence 5 78899999999999988765
No 15
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=7.5e-23 Score=184.20 Aligned_cols=97 Identities=35% Similarity=0.568 Sum_probs=92.2
Q ss_pred cHHHHHHHHHHHHcc---CCCCcccCCCCCC--CCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhc
Q 004926 3 DKKSLELILDKLQKK---DTYGVYAEPVDPE--ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQY 77 (723)
Q Consensus 3 dkK~Le~ILd~L~k~---d~s~pF~ePVd~e--elPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~Y 77 (723)
+.+.|..||+.|+++ +.+++|.+||++. .+||||++|++||||++|++||+++.|.++++|+.||+|||.||+.|
T Consensus 1 ~~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~y 80 (102)
T cd05499 1 ELKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTF 80 (102)
T ss_pred ChHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999994 5689999999998 89999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 004926 78 NAPDTVYHKQARAIQELAKKKF 99 (723)
Q Consensus 78 N~pdS~Iyk~A~~Le~lfek~~ 99 (723)
|+++|.++.+|..|++.|+++|
T Consensus 81 n~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 81 NPEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998764
No 16
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.4e-22 Score=180.91 Aligned_cols=96 Identities=41% Similarity=0.641 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHccCCCCcccCCCCCC--CCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCC
Q 004926 4 KKSLELILDKLQKKDTYGVYAEPVDPE--ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 81 (723)
Q Consensus 4 kK~Le~ILd~L~k~d~s~pF~ePVd~e--elPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pd 81 (723)
.+.|..||+.|++++.+++|..||++. .+|+||++|++||||+||++||+++.|.++++|..||.|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~ 81 (99)
T cd05506 2 MKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPG 81 (99)
T ss_pred HHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 578999999999999999999999876 699999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 004926 82 TVYHKQARAIQELAKKKF 99 (723)
Q Consensus 82 S~Iyk~A~~Le~lfek~~ 99 (723)
|.+|.+|..|++.|++.|
T Consensus 82 s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 82 NDVHTMAKELLKIFETRW 99 (99)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999998764
No 17
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.4e-22 Score=182.15 Aligned_cols=97 Identities=39% Similarity=0.652 Sum_probs=92.4
Q ss_pred cHHHHHHHHHHHHcc---CCCCcccCCCCCC--CCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhc
Q 004926 3 DKKSLELILDKLQKK---DTYGVYAEPVDPE--ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQY 77 (723)
Q Consensus 3 dkK~Le~ILd~L~k~---d~s~pF~ePVd~e--elPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~Y 77 (723)
+++.|+.||+.|+++ +.+++|.+||++. .+||||++|++||||++|++||+++.|.++++|..||+|||+||+.|
T Consensus 1 ~~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 80 (102)
T cd05498 1 QLKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKY 80 (102)
T ss_pred ChhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 368999999999999 7899999999986 59999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 004926 78 NAPDTVYHKQARAIQELAKKKF 99 (723)
Q Consensus 78 N~pdS~Iyk~A~~Le~lfek~~ 99 (723)
|+++|.++.+|..|++.|+++|
T Consensus 81 n~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 81 NPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998864
No 18
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.3e-22 Score=185.10 Aligned_cols=98 Identities=28% Similarity=0.548 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHccCC------CCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhc
Q 004926 4 KKSLELILDKLQKKDT------YGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQY 77 (723)
Q Consensus 4 kK~Le~ILd~L~k~d~------s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~Y 77 (723)
.+.|..||+.|.++.+ +++|.++|+...+||||++|++||||++|++||++|.|.++++|..||.|||.||+.|
T Consensus 3 ~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 82 (107)
T cd05516 3 TKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQTF 82 (107)
T ss_pred HHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5789999999999876 6899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q 004926 78 NAPDTVYHKQARAIQELAKKKFHR 101 (723)
Q Consensus 78 N~pdS~Iyk~A~~Le~lfek~~kk 101 (723)
|.++|.+|.+|..|+++|++.+++
T Consensus 83 N~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 83 NLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999988865
No 19
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=3.2e-22 Score=181.86 Aligned_cols=97 Identities=22% Similarity=0.363 Sum_probs=91.6
Q ss_pred cHHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCC
Q 004926 3 DKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDT 82 (723)
Q Consensus 3 dkK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS 82 (723)
+.++|+.||.+|++++.+++|..+ +..+||||++|++||||+||++||.++.|.++++|++||+|||.||+.||+++
T Consensus 3 ~l~~ce~il~~l~~~~~s~~f~~~--p~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~- 79 (102)
T cd05501 3 ELLKCEFLLLKVYCMSKSGFFISK--PYYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD- 79 (102)
T ss_pred HHHHHHHHHHHHHhCcccccccCC--CCCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC-
Confidence 457899999999999999999763 46899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004926 83 VYHKQARAIQELAKKKFHRL 102 (723)
Q Consensus 83 ~Iyk~A~~Le~lfek~~kkL 102 (723)
.++.+|..|++.|++.|+++
T Consensus 80 ~~~~~a~~L~~~Fek~~~~~ 99 (102)
T cd05501 80 DFGQVGITLEKKFEKNFKEV 99 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998775
No 20
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=3.4e-22 Score=180.57 Aligned_cols=95 Identities=27% Similarity=0.541 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHccCCCCcccCCCCCC--CCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCC
Q 004926 4 KKSLELILDKLQKKDTYGVYAEPVDPE--ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 81 (723)
Q Consensus 4 kK~Le~ILd~L~k~d~s~pF~ePVd~e--elPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pd 81 (723)
++.|..||+.|++++.+++|..||++. .+||||++|++||||++|++||+++.|.++.+|..||+|||.||+.||+++
T Consensus 6 ~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 85 (103)
T cd05500 6 HKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNGPE 85 (103)
T ss_pred HHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 588999999999999999999999976 699999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 004926 82 TVYHKQARAIQELAKKK 98 (723)
Q Consensus 82 S~Iyk~A~~Le~lfek~ 98 (723)
|.++.+|..|++.|++.
T Consensus 86 s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 86 HPVSQMGKRLQAAFEKH 102 (103)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999998875
No 21
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.87 E-value=6.1e-22 Score=182.31 Aligned_cols=99 Identities=29% Similarity=0.543 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCC--
Q 004926 4 KKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD-- 81 (723)
Q Consensus 4 kK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pd-- 81 (723)
+..|..|++.|+.++.+++|.+||+...+||||++|++||||+||++||++++|.++++|.+||.|||.||+.||+++
T Consensus 5 r~~L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~ 84 (112)
T cd05528 5 RLFLRDVLKRLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPDRDP 84 (112)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCCCCCc
Confidence 356899999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred --CHHHHHHHHHHHHHHHHHHHH
Q 004926 82 --TVYHKQARAIQELAKKKFHRL 102 (723)
Q Consensus 82 --S~Iyk~A~~Le~lfek~~kkL 102 (723)
+.++..|..|++.+.+++...
T Consensus 85 ~~s~i~~~A~~L~~~~~~~~~~~ 107 (112)
T cd05528 85 ADKLIRSRACELRDEVHAMIEAE 107 (112)
T ss_pred cccHHHHHHHHHHHHHHHHHHhc
Confidence 699999999999999888654
No 22
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=7.9e-22 Score=181.65 Aligned_cols=102 Identities=23% Similarity=0.373 Sum_probs=94.8
Q ss_pred CcHHHHHHHHHHHHccC------CCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhh
Q 004926 2 PDKKSLELILDKLQKKD------TYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAM 75 (723)
Q Consensus 2 PdkK~Le~ILd~L~k~d------~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~ 75 (723)
.-.+.|..|++.|+++. .+.+|.++|+...+||||++|++||||+||++||+++.|.++++|+.||.|||.||+
T Consensus 2 ~~~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~ 81 (113)
T cd05524 2 DPIAVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAK 81 (113)
T ss_pred cHHHHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHH
Confidence 34689999999999754 345899999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004926 76 QYNAPDTVYHKQARAIQELAKKKFHRLR 103 (723)
Q Consensus 76 ~YN~pdS~Iyk~A~~Le~lfek~~kkL~ 103 (723)
.||.++|.+|.+|..|+++|++.++++.
T Consensus 82 ~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 109 (113)
T cd05524 82 AYYKPDSPEHKDACKLWELFLSARNEVL 109 (113)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999887764
No 23
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=7.1e-22 Score=178.52 Aligned_cols=96 Identities=24% Similarity=0.449 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHcc------CCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhc
Q 004926 4 KKSLELILDKLQKK------DTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQY 77 (723)
Q Consensus 4 kK~Le~ILd~L~k~------d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~Y 77 (723)
++.|+.|++.|+.+ +.+++|.++|+...+||||++|++||||++|++||+++.|.++.+|..||+|||.||+.|
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 81 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTY 81 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 68899999999954 457899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 004926 78 NAPDTVYHKQARAIQELAKKKF 99 (723)
Q Consensus 78 N~pdS~Iyk~A~~Le~lfek~~ 99 (723)
|+++|.+|.+|..|++.|++++
T Consensus 82 n~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 82 NQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998763
No 24
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=1.5e-21 Score=177.43 Aligned_cols=96 Identities=29% Similarity=0.480 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHccC------CCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhc
Q 004926 4 KKSLELILDKLQKKD------TYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQY 77 (723)
Q Consensus 4 kK~Le~ILd~L~k~d------~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~Y 77 (723)
.++|..|++.|..+. .+++|.+||+..++||||++|++||||+||++||+++.|.++++|+.||.|||.||+.|
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~y 81 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKY 81 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999998754 45799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 004926 78 NAPDTVYHKQARAIQELAKKKF 99 (723)
Q Consensus 78 N~pdS~Iyk~A~~Le~lfek~~ 99 (723)
|+++|.+|.+|..|+++|.+..
T Consensus 82 N~~~s~i~~~A~~L~~~~~~~~ 103 (105)
T cd05515 82 NEPDSQIYKDALTLQKVLLETK 103 (105)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988765
No 25
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.85 E-value=2.1e-21 Score=176.18 Aligned_cols=94 Identities=28% Similarity=0.500 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHccCC------CCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhc
Q 004926 4 KKSLELILDKLQKKDT------YGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQY 77 (723)
Q Consensus 4 kK~Le~ILd~L~k~d~------s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~Y 77 (723)
++.|+.|++.|+.+.+ +++|.++|++..+||||++|++||||++|++||+++.|.++++|+.||.|||.||+.|
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 81 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTF 81 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5789999999988644 4799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 004926 78 NAPDTVYHKQARAIQELAKK 97 (723)
Q Consensus 78 N~pdS~Iyk~A~~Le~lfek 97 (723)
|+++|.+|.+|..|+++|..
T Consensus 82 N~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 82 NEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999998875
No 26
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.85 E-value=9.2e-22 Score=225.96 Aligned_cols=105 Identities=37% Similarity=0.593 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHccCCCCcccCCCCCCC--CCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCC
Q 004926 4 KKSLELILDKLQKKDTYGVYAEPVDPEE--LPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 81 (723)
Q Consensus 4 kK~Le~ILd~L~k~d~s~pF~ePVd~ee--lPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pd 81 (723)
.+.|..||..|++|+++|+|..|||... +||||+||++||||+||++||.++.|.++.||..||+|||.||++||.++
T Consensus 224 lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~YNp~g 303 (640)
T KOG1474|consen 224 LKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMTYNPEG 303 (640)
T ss_pred HHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 4789999999999999999999999874 89999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004926 82 TVYHKQARAIQELAKKKFHRLRAGIER 108 (723)
Q Consensus 82 S~Iyk~A~~Le~lfek~~kkL~~eie~ 108 (723)
+.||.+|..|+++|+..|..+...++.
T Consensus 304 ~dV~~Ma~~L~~~Fe~rw~~~~~~~~~ 330 (640)
T KOG1474|consen 304 SDVYAMAKKLQEVFEERWASMPLEIEE 330 (640)
T ss_pred CHHHHHHHHHHHHHHHHHhhccccccc
Confidence 999999999999999999987655443
No 27
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.85 E-value=2.3e-21 Score=176.00 Aligned_cols=95 Identities=22% Similarity=0.413 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHcc------CCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhc
Q 004926 4 KKSLELILDKLQKK------DTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQY 77 (723)
Q Consensus 4 kK~Le~ILd~L~k~------d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~Y 77 (723)
+++|..|++.|.+. ..+.+|..+|+...+||||++|++||||+||++||+++.|.++++|+.||.|||.||+.|
T Consensus 2 ~~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 81 (103)
T cd05518 2 KKRMLALFLYVLEYREGSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHY 81 (103)
T ss_pred hHHHHHHHHHHHHhhccCCCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46788888888775 456699999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 004926 78 NAPDTVYHKQARAIQELAKKK 98 (723)
Q Consensus 78 N~pdS~Iyk~A~~Le~lfek~ 98 (723)
|+++|.+|.+|..|+++|++.
T Consensus 82 N~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 82 NEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999988753
No 28
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.85 E-value=3.4e-21 Score=174.80 Aligned_cols=93 Identities=30% Similarity=0.537 Sum_probs=85.1
Q ss_pred HHHHHHHHHHccC------CCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCC
Q 004926 6 SLELILDKLQKKD------TYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNA 79 (723)
Q Consensus 6 ~Le~ILd~L~k~d------~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~ 79 (723)
-|..|++.|+.+. .+++|.++|+...+||||++|++||||+||++||+++.|.++++|+.||+|||.||+.||+
T Consensus 4 ~~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~ 83 (103)
T cd05520 4 PLWQLYDTIRNARNNQGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNV 83 (103)
T ss_pred hHHHHHHHHHhhcCCCCCCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 3566777776653 5668999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 004926 80 PDTVYHKQARAIQELAKKK 98 (723)
Q Consensus 80 pdS~Iyk~A~~Le~lfek~ 98 (723)
++|.+|.+|..|+++|++.
T Consensus 84 ~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 84 PNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999998763
No 29
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=5.8e-21 Score=174.29 Aligned_cols=95 Identities=20% Similarity=0.358 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHccCC------CCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhc
Q 004926 4 KKSLELILDKLQKKDT------YGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQY 77 (723)
Q Consensus 4 kK~Le~ILd~L~k~d~------s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~Y 77 (723)
.+.|+.||+.|..+.+ +++|.++|+...+||||++|++||||++|++||+++.|.++++|..||.|||+||+.|
T Consensus 4 ~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~y 83 (106)
T cd05525 4 AQVLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEKY 83 (106)
T ss_pred HHHHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3678899999987544 5799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 004926 78 NAPDTVYHKQARAIQELAKKK 98 (723)
Q Consensus 78 N~pdS~Iyk~A~~Le~lfek~ 98 (723)
|+++|.+|.+|..|+++|++.
T Consensus 84 n~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 84 YGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred CCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999998763
No 30
>smart00297 BROMO bromo domain.
Probab=99.84 E-value=7.1e-21 Score=169.95 Aligned_cols=98 Identities=41% Similarity=0.704 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCH
Q 004926 4 KKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTV 83 (723)
Q Consensus 4 kK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS~ 83 (723)
+..|..|++.+.+++.+++|.+||+...+|+||++|++||||.+|++||+++.|.++++|+.||.+||.||+.||++++.
T Consensus 9 ~~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n~~~s~ 88 (107)
T smart00297 9 QSLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYNGPDSE 88 (107)
T ss_pred HHHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46788888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004926 84 YHKQARAIQELAKKKFHR 101 (723)
Q Consensus 84 Iyk~A~~Le~lfek~~kk 101 (723)
++..|..|.+.|++.+++
T Consensus 89 ~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 89 VYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999988864
No 31
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=1e-20 Score=177.81 Aligned_cols=97 Identities=32% Similarity=0.496 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHH---ccCCCCcccCCCCCC-CCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCC
Q 004926 4 KKSLELILDKLQ---KKDTYGVYAEPVDPE-ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNA 79 (723)
Q Consensus 4 kK~Le~ILd~L~---k~d~s~pF~ePVd~e-elPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~ 79 (723)
++.|..++++|+ .++.+++|..||+.. .+|+||++|++||||+||++||+++.|.++++|+.||+|||.||+.||+
T Consensus 26 ~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~ 105 (128)
T cd05529 26 RERLISGLDKLLLSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAETFNE 105 (128)
T ss_pred HHHHHHHHHHHHhcccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 467888899998 899999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 004926 80 PDTVYHKQARAIQELAKKKFH 100 (723)
Q Consensus 80 pdS~Iyk~A~~Le~lfek~~k 100 (723)
++|.++..|..|++.|.+.+.
T Consensus 106 ~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 106 PNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred CCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999988764
No 32
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=1.9e-20 Score=169.99 Aligned_cols=97 Identities=29% Similarity=0.403 Sum_probs=90.4
Q ss_pred CcHHHHHHHHHHHHcc------CCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhh
Q 004926 2 PDKKSLELILDKLQKK------DTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAM 75 (723)
Q Consensus 2 PdkK~Le~ILd~L~k~------d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~ 75 (723)
|...++..|++.|++. +.+.+|.++|+...+||||++|++||||++|++||+++.|.++.+|+.||.|||.||+
T Consensus 1 ~~~~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 80 (104)
T cd05522 1 PYEARIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAK 80 (104)
T ss_pred CHHHHHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 5677899999999874 4567999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHH
Q 004926 76 QYNAPDTVYHKQARAIQELAKKK 98 (723)
Q Consensus 76 ~YN~pdS~Iyk~A~~Le~lfek~ 98 (723)
.||++++.+|.+|..|++.|++.
T Consensus 81 ~yn~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 81 LYNENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999988763
No 33
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.82 E-value=5.2e-20 Score=158.59 Aligned_cols=95 Identities=49% Similarity=0.791 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHcc--CCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCC
Q 004926 4 KKSLELILDKLQKK--DTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 81 (723)
Q Consensus 4 kK~Le~ILd~L~k~--d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pd 81 (723)
...|..|++.|..+ +.+.+|..||++..+|+||++|++||||.+|++||+++.|.++.+|..||.+||.||+.||+.+
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~ 81 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPG 81 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 57899999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 004926 82 TVYHKQARAIQELAKKK 98 (723)
Q Consensus 82 S~Iyk~A~~Le~lfek~ 98 (723)
+.++..|..|...|++.
T Consensus 82 ~~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 82 SPIYKDAKKLEKLFEKL 98 (99)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999988765
No 34
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.81 E-value=5.3e-20 Score=157.67 Aligned_cols=84 Identities=48% Similarity=0.806 Sum_probs=80.3
Q ss_pred HHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 004926 7 LELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHK 86 (723)
Q Consensus 7 Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS~Iyk 86 (723)
|+.||+.|++++.+.+|..+|+...+|+|+++|++||||.+|++||+++.|.++++|+.||++||.||+.||+++|.+|.
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~~ 80 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPIYK 80 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 004926 87 QARA 90 (723)
Q Consensus 87 ~A~~ 90 (723)
+|.+
T Consensus 81 ~A~~ 84 (84)
T PF00439_consen 81 AAEK 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9974
No 35
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.81 E-value=7.1e-20 Score=167.28 Aligned_cols=94 Identities=26% Similarity=0.403 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHccCCC------CcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhc
Q 004926 4 KKSLELILDKLQKKDTY------GVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQY 77 (723)
Q Consensus 4 kK~Le~ILd~L~k~d~s------~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~Y 77 (723)
.++|..|++.|+..++. .+|..+++.+.+||||++|++||||++|++||++ |.++++|+.|+.|||+||+.|
T Consensus 3 ~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~y 80 (106)
T cd05521 3 SKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARLY 80 (106)
T ss_pred HHHHHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHH
Confidence 47899999999886554 4899999999999999999999999999999998 999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 004926 78 NAPDTVYHKQARAIQELAKKKF 99 (723)
Q Consensus 78 N~pdS~Iyk~A~~Le~lfek~~ 99 (723)
|.++|.+|.+|..|+++|.+.+
T Consensus 81 N~~~s~i~~~A~~le~~~~~~~ 102 (106)
T cd05521 81 NTKGSVIYKYALILEKYINDVI 102 (106)
T ss_pred cCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999988765
No 36
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.80 E-value=3.2e-20 Score=219.45 Aligned_cols=289 Identities=31% Similarity=0.356 Sum_probs=184.6
Q ss_pred CCcHHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCC
Q 004926 1 MPDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP 80 (723)
Q Consensus 1 LPdkK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~p 80 (723)
.|++++|+.+++.|++.+..++|..||+..++|||+++|++||||.||+.+++.+.|.++++|+.|+.+|+.||+.||..
T Consensus 564 ~p~~kLl~~~l~~lq~kD~~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~~ 643 (1051)
T KOG0955|consen 564 NPFKKLLQKSLDKLQKKDSYGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNAK 643 (1051)
T ss_pred chHHHHHHHHHHHhhcccccCceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhcc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcChhhhhhhhHHhhhhhccCCCccCCchhhhhhhcccCCCCCCcCCC-
Q 004926 81 DTVYHKQARAIQELAKKKFHRLRAGIERSEKELKPEKELNLEKELRLEKDLKSEPKTKSSILVKKQTKKHFSRTIQEPV- 159 (723)
Q Consensus 81 dS~Iyk~A~~Le~lfek~~kkL~~eie~~E~Elk~e~e~~e~eeeedEeE~ksdek~~s~~~~Kkk~Kkp~sR~~~epv- 159 (723)
++.+|++|..++++....+.+++.+.+....-......--+....+.+.+. ++..+...++.
T Consensus 644 dtv~~r~av~~~e~~~~~~~~arke~e~~~~~d~~~~~~~~~~~~~~~~~~-----------------~~~~~~~e~~~v 706 (1051)
T KOG0955|consen 644 DTVYYRAAVRLRELIKKDFRNARKEPESEGLLDRESLSHHDHLVKKLERPY-----------------RPNLWAPEEPQV 706 (1051)
T ss_pred CeehHhhhHHHHhhhhhHHHhcccchhhhcccchhhhcccchhhhhhccCC-----------------cccccccccccc
Confidence 999999999999999999988876544322000000000000000000000 00000000000
Q ss_pred ----CCCCCCCccccCCCCcCCCCccccC-CCCCCCCCCccccccCchhhhc-ccchhh--hh---hcc-cCccccCCCC
Q 004926 160 ----GSDFSSGATLATTGDIQNGSVATQA-GGCERPTNTDAIVDGNSSLADN-NLEKVE--EL---SSA-KGLLSKLGRK 227 (723)
Q Consensus 160 ----~Sd~ss~atlat~gd~~n~~~~~~~-~~rgRPp~iD~p~earik~IlK-~~eK~~--D~---~sg-~~l~~kfgRk 227 (723)
-..++....++..-+.......... ..+-|+.. .++..++..-+ +.-..+ +. .+| ..-+.++|.+
T Consensus 707 ~~e~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~s~~r~~~~~~~e~~~~~~~p~~~~~~~~~~~~~ 783 (1051)
T KOG0955|consen 707 DLETFINLSKEHDLKIPLDKNEKKKATKLSIPRNRDSR---IIRKEKSRLRKCGIVDTETSGSPSIPSGGEKTVKKDGLN 783 (1051)
T ss_pred ccccccccChhhhhccccccchhhhhhhcccccccccc---cchhhHHHHhhccCcCccccCCCCCCCccccchhccccc
Confidence 0000000000000000000000000 00111100 00111110000 000000 00 001 0011222222
Q ss_pred CCCcccccccccCCCCCCCcCCCCceeeecCcccceeEeccccchhhHHHHHHHHhhhChhHHHHHHHHHHhhcCCCCcc
Q 004926 228 PAVPDENRRATYSISTQPVVRSDSIFTTFEGETKHLVAVGLHAEYSYARSLARFAATLGPVAWKVASRRIEQALPAGCKF 307 (723)
Q Consensus 228 P~~~De~RR~TY~~~~~~~~~~~~i~~~~~~e~K~Lv~Vg~~~e~~YarSLarFaa~lGp~~w~iAs~ri~~~Lp~g~~f 307 (723)
+.+++.+|.+. ...-.++++++.+.++.|++-|++|..+.+|+||+++.+++++++||.+|+.+++..++.+..|
T Consensus 784 ----~~~~~~~~~~~-~s~p~~~~~~sp~~~~~~~~~p~~l~~~s~~~~sn~~l~~n~t~~~~~~~~~~~~~~~~~~~~~ 858 (1051)
T KOG0955|consen 784 ----SKNLKMSSDQA-LSSPPSEPLGSPYNDSVKGVKPSVLLEKSGLLRSNANLSQNPTASANNLASTSCSVTKATFTGN 858 (1051)
T ss_pred ----ccccccccchh-hcCCCCCCCCCCccccccccCchhhHhhccccccccccccCCCcccccccccccccccCCccCC
Confidence 17899999742 2223689999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccC
Q 004926 308 GRGWVGE 314 (723)
Q Consensus 308 G~GWvge 314 (723)
|.||+++
T Consensus 859 g~g~~~~ 865 (1051)
T KOG0955|consen 859 GVGGDVK 865 (1051)
T ss_pred CCCcccc
Confidence 9999443
No 37
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.78 E-value=1.3e-18 Score=159.93 Aligned_cols=98 Identities=20% Similarity=0.359 Sum_probs=88.3
Q ss_pred HHHHHHHHHHc-cCCCCcccCCCCC-----CCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCC
Q 004926 6 SLELILDKLQK-KDTYGVYAEPVDP-----EELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNA 79 (723)
Q Consensus 6 ~Le~ILd~L~k-~d~s~pF~ePVd~-----eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~ 79 (723)
.|..++..++. .+.+.+|..+|.. ..+|+||++|++||||+||++||+++.|++++||..||.|||+||..||+
T Consensus 4 ~L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg 83 (109)
T cd05492 4 LLKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHG 83 (109)
T ss_pred hHHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 56778888877 5777999999952 24999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q 004926 80 PDTVYHKQARAIQELAKKKFHRLR 103 (723)
Q Consensus 80 pdS~Iyk~A~~Le~lfek~~kkL~ 103 (723)
++|.+|..|+.|.+.+...+.+++
T Consensus 84 ~~s~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 84 ADSEQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988887777664
No 38
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.70 E-value=8.5e-17 Score=148.26 Aligned_cols=98 Identities=18% Similarity=0.267 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHccCC------CCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhc
Q 004926 4 KKSLELILDKLQKKDT------YGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQY 77 (723)
Q Consensus 4 kK~Le~ILd~L~k~d~------s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~Y 77 (723)
++.+..|++.|+.+.+ +.+|.+.+. ..++||.+|++||||++|++||++|.|.++++|..||.+||.||+.|
T Consensus 5 q~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~y 82 (110)
T cd05526 5 QELLATLFVSVMNHQDEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERARRL 82 (110)
T ss_pred HHHHHHHHHHHHhccCCCCCCchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHHh
Confidence 5788899999988754 348999887 55788999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004926 78 NAPDTVYHKQARAIQELAKKKFHRLR 103 (723)
Q Consensus 78 N~pdS~Iyk~A~~Le~lfek~~kkL~ 103 (723)
|.++|.+|.+|.+|+.+|.+..+++.
T Consensus 83 N~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 83 SRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988877664
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.62 E-value=7e-16 Score=167.07 Aligned_cols=102 Identities=27% Similarity=0.449 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHc------cCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhc
Q 004926 4 KKSLELILDKLQK------KDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQY 77 (723)
Q Consensus 4 kK~Le~ILd~L~k------~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~Y 77 (723)
.+.+..|+..+.. +....+|..+|+...+||||.||+.||||.+|++||+.+.|.++++|+.|+.|||.||..|
T Consensus 144 ~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~y 223 (371)
T COG5076 144 YADNKAIAKFKKQLFLRDGRFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLY 223 (371)
T ss_pred HHHHHHHHHHHHHhhcccccccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhc
Confidence 3444555544433 3456799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 004926 78 NAPDTVYHKQARAIQELAKKKFHRLRAG 105 (723)
Q Consensus 78 N~pdS~Iyk~A~~Le~lfek~~kkL~~e 105 (723)
|.+++.+|.+|..|++.+.+.+..+...
T Consensus 224 N~~~s~v~~~a~~l~~~~~~~i~~~~~~ 251 (371)
T COG5076 224 NGPDSSVYVDAKELEKYFLKLIEEIPEE 251 (371)
T ss_pred cCCCcchhhhhHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999876543
No 40
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.56 E-value=3.3e-15 Score=182.84 Aligned_cols=95 Identities=33% Similarity=0.615 Sum_probs=91.7
Q ss_pred HHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 004926 7 LELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHK 86 (723)
Q Consensus 7 Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS~Iyk 86 (723)
|+.||..|+.|+.+|+|++||++..+||||+||++||||.||+.|+..|.|.+.++|..||.|||.||.+||.. +.+++
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i~~ 1384 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEIGR 1384 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHH
Q 004926 87 QARAIQELAKKKFHRL 102 (723)
Q Consensus 87 ~A~~Le~lfek~~kkL 102 (723)
+...|..+|.+.|...
T Consensus 1385 ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1385 AGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred hcchHHHHHHHHHHhh
Confidence 9999999999866543
No 41
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.33 E-value=9.9e-13 Score=151.54 Aligned_cols=99 Identities=34% Similarity=0.593 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCHH
Q 004926 5 KSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVY 84 (723)
Q Consensus 5 K~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS~I 84 (723)
..+..||+.|..|..+|+|.+||+..++||||++|++||||.||+.+|.++.|...+.|+.|+.+||.||+.||+.++.+
T Consensus 609 s~~~~il~~l~~h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~~~~y 688 (720)
T KOG1472|consen 609 SAIQNILDQLQNHGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGSDTQY 688 (720)
T ss_pred HHHHhHHhhhhcCCccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCccchh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004926 85 HKQARAIQELAKKKFHRLR 103 (723)
Q Consensus 85 yk~A~~Le~lfek~~kkL~ 103 (723)
|+.|..|...|...+....
T Consensus 689 ~k~~~~le~~~~~k~~~~i 707 (720)
T KOG1472|consen 689 YKCAQALEKFFLFKLNELI 707 (720)
T ss_pred eecccchhhhhcchhhhhh
Confidence 9999999999988876654
No 42
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.99 E-value=3.7e-10 Score=104.84 Aligned_cols=76 Identities=25% Similarity=0.357 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHc---cCCCCcccCCCCC--CCCCChhhhcCCccCHHHHHHHHhcCCC-------CCHHHHHHHHHHHH
Q 004926 4 KKSLELILDKLQK---KDTYGVYAEPVDP--EELPDYHDVIENPMDFTTVRKKLANGSY-------SSLDQFESDVFLIC 71 (723)
Q Consensus 4 kK~Le~ILd~L~k---~d~s~pF~ePVd~--eelPDYYeIIKkPMDLsTIkkKLkng~Y-------~SieEF~~DV~LIf 71 (723)
++.|+.+|..|.+ ++.+++|..||++ ..+||||++|++||||+||++||.++.| ..-....+++..++
T Consensus 2 ~e~~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (114)
T cd05494 2 YEALERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDE 81 (114)
T ss_pred HHHHHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccccccccccccccccccccccccc
Confidence 4455555555544 5599999999999 7899999999999999999999999744 33334445555555
Q ss_pred HhhhhcCC
Q 004926 72 TNAMQYNA 79 (723)
Q Consensus 72 ~NA~~YN~ 79 (723)
.||..+|.
T Consensus 82 ~~~~~~~~ 89 (114)
T cd05494 82 GRRSPSNI 89 (114)
T ss_pred cccCcccc
Confidence 55555554
No 43
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.90 E-value=1.6e-09 Score=129.88 Aligned_cols=102 Identities=30% Similarity=0.523 Sum_probs=91.2
Q ss_pred HHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q 004926 7 LELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHK 86 (723)
Q Consensus 7 Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS~Iyk 86 (723)
+-.|+.+++..+.+|+|++||+.+..|+||.+|++||||.+|.+++..+.|.+.+||.+||++|+.||..||+.++.+..
T Consensus 1387 ~d~~vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~~ 1466 (1563)
T KOG0008|consen 1387 LDNIVSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYTK 1466 (1563)
T ss_pred hhhHHHHHHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccccccH
Confidence 44566666778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH
Q 004926 87 QARAIQELAKKKFHRLRAGIER 108 (723)
Q Consensus 87 ~A~~Le~lfek~~kkL~~eie~ 108 (723)
.|+++-+++...+.+...+.-.
T Consensus 1467 k~~k~~ev~~~~~~e~~~~~~~ 1488 (1563)
T KOG0008|consen 1467 KARKIGEVGLANLLEYIEHLLQ 1488 (1563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888777655544333
No 44
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.89 E-value=2.3e-09 Score=122.58 Aligned_cols=100 Identities=24% Similarity=0.418 Sum_probs=90.8
Q ss_pred CCcHHHHHHHHHHHHccCCC------CcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhh
Q 004926 1 MPDKKSLELILDKLQKKDTY------GVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNA 74 (723)
Q Consensus 1 LPdkK~Le~ILd~L~k~d~s------~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA 74 (723)
+|+..++..||..|..+.+. ..|.+.++.++.|+||.+|..||+|..|++|++++.|.+++.|+.|+.||+.||
T Consensus 51 ~~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~ena 130 (629)
T KOG1827|consen 51 PPLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTENA 130 (629)
T ss_pred hHHHHHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 36678888999988876443 479999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHH
Q 004926 75 MQYNAPDTVYHKQARAIQELAKKKFH 100 (723)
Q Consensus 75 ~~YN~pdS~Iyk~A~~Le~lfek~~k 100 (723)
+.||.+++.+|++|..|+..|.....
T Consensus 131 ~~~n~~ds~~~~~s~~l~~~~~~~~~ 156 (629)
T KOG1827|consen 131 RLYNRPDSLIYKDSGELEKYFISLED 156 (629)
T ss_pred HHhcCcchhhhhhhhhhhcchhhhhc
Confidence 99999999999999999988776543
No 45
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.87 E-value=2.4e-09 Score=126.19 Aligned_cols=99 Identities=25% Similarity=0.405 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHccCC------CCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcC
Q 004926 5 KSLELILDKLQKKDT------YGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYN 78 (723)
Q Consensus 5 K~Le~ILd~L~k~d~------s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN 78 (723)
+.|..|+....++.. +..|...++...+||||+||++||++..|+++|.++.|.+..+...|+.++|.||+.||
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~ 1106 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYN 1106 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhc
Confidence 568888888876544 56999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q 004926 79 APDTVYHKQARAIQELAKKKFHRLR 103 (723)
Q Consensus 79 ~pdS~Iyk~A~~Le~lfek~~kkL~ 103 (723)
..+|.+|.+|..|+.++......+.
T Consensus 1107 ~egs~~y~d~~~l~~~~~~~~~~~~ 1131 (1157)
T KOG0386|consen 1107 EEGSRVYEDAIVLQSVFKSARQEIS 1131 (1157)
T ss_pred cCCceechhHHHHHHHHhhhHHHHh
Confidence 9999999999999999888777664
No 46
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.81 E-value=9e-09 Score=123.74 Aligned_cols=149 Identities=25% Similarity=0.338 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCHH
Q 004926 5 KSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVY 84 (723)
Q Consensus 5 K~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS~I 84 (723)
-.|..|++.+...+...+|..||+...++|||.||+.||||.++|+.+....|.+-++|..|+.||+.|..+||++.+.+
T Consensus 1264 s~l~~i~n~~~~~~~t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~~~ 1343 (1563)
T KOG0008|consen 1264 SILETIINQARSSPNTYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLASL 1343 (1563)
T ss_pred cchHHHHHHHhcCCCCcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhcChhhhhhhhHHhhhhhccCCCccCCchhhhhhhcccCCCCCCcCCCCCCCC
Q 004926 85 HKQARAIQELAKKKFHRLRAGIERSEKELKPEKELNLEKELRLEKDLKSEPKTKSSILVKKQTKKHFSRTIQEPVGSDFS 164 (723)
Q Consensus 85 yk~A~~Le~lfek~~kkL~~eie~~E~Elk~e~e~~e~eeeedEeE~ksdek~~s~~~~Kkk~Kkp~sR~~~epv~Sd~s 164 (723)
...+..+-.++-..+..-.+.+-..|.++.+.... ++.. .....+..+.+...-+.+|+|++++.++..
T Consensus 1344 t~~~q~mls~~~~~~~ekedk~~~lEk~Inplld~----------~d~v-~~~~~d~~vs~~~~ipes~~f~~~v~~k~~ 1412 (1563)
T KOG0008|consen 1344 TRQQQSMLSLCFEKLKEKEDKLWRLEKAINPLLDD----------DDQV-AFFILDNIVSQMKEIPESWPFHEPVNKKRV 1412 (1563)
T ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHhhcCcccCc----------cchh-hHhhhhhHHHHHHhcchhcccccccchhhc
Confidence 99999998888777766666666666555543221 1111 112333344445556778888888877654
No 47
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.75 E-value=6.6e-09 Score=97.31 Aligned_cols=44 Identities=25% Similarity=0.347 Sum_probs=40.8
Q ss_pred cCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCC
Q 004926 39 IENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDT 82 (723)
Q Consensus 39 IKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS 82 (723)
+-.||||+||++||.+|.|.++++|+.||+|||.||+.||.++.
T Consensus 61 ~~y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~dr 104 (119)
T cd05491 61 KFYNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRER 104 (119)
T ss_pred eEeccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 34689999999999999999999999999999999999998744
No 48
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.37 E-value=6.5e-08 Score=105.05 Aligned_cols=99 Identities=32% Similarity=0.357 Sum_probs=92.6
Q ss_pred CCcHHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCC
Q 004926 1 MPDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP 80 (723)
Q Consensus 1 LPdkK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~p 80 (723)
+|+....+.++.++-+++.-..|..||.....|+|.+||+.|||+.|++.|++.+.|.++.+|..|.++|+.||..||..
T Consensus 18 sp~~~~~ehhlrkl~sKdp~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~ 97 (418)
T KOG1828|consen 18 SPDSGDAEHHLRKLPSKDPKQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLH 97 (418)
T ss_pred CcchhhHHHHHHhccccChhhhhccccchhhccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcC
Confidence 36667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 004926 81 DTVYHKQARAIQELAKKKF 99 (723)
Q Consensus 81 dS~Iyk~A~~Le~lfek~~ 99 (723)
++.++..|..|..+....+
T Consensus 98 ~Tv~~~aaKrL~~v~~~~~ 116 (418)
T KOG1828|consen 98 PTVPIVAAKRLCPVRLGMT 116 (418)
T ss_pred Cccccccccccchhhcchh
Confidence 9999999999988776665
No 49
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.36 E-value=2.8e-07 Score=107.28 Aligned_cols=77 Identities=31% Similarity=0.540 Sum_probs=67.9
Q ss_pred cCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCH-HHHHHHHHHH
Q 004926 17 KDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTV-YHKQARAIQE 93 (723)
Q Consensus 17 ~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS~-Iyk~A~~Le~ 93 (723)
+.++++|.++|+.++.|+||.||+.||||.++.+|+..+.|.+.++|+.|+.+||.||..||...+. +-..|.....
T Consensus 301 ~~~s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~~~~~~~vv~~~ 378 (720)
T KOG1472|consen 301 TEHSTPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESHGLIEFAVIMNS 378 (720)
T ss_pred cccccccccCCChhhCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccchhhhhhhhhhcc
Confidence 5788999999999999999999999999999999999999999999999999999999999997654 3334444433
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.00 E-value=4.1e-06 Score=91.37 Aligned_cols=88 Identities=22% Similarity=0.157 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCHH
Q 004926 5 KSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVY 84 (723)
Q Consensus 5 K~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS~I 84 (723)
..+....++|...+....|..++....+|.|.-+|++|+|+.|+++|+.+..|.| -+|..|+.|||.||++||.++..+
T Consensus 211 ~l~~~q~~kl~~~~p~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~y 289 (418)
T KOG1828|consen 211 QLQTLQEDKLNRVDPVAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSY 289 (418)
T ss_pred HHHHHHHHHhcccCchhhhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHH
Confidence 3455566777778888999999999999999999999999999999999999999 899999999999999999999999
Q ss_pred HHHHHHHHH
Q 004926 85 HKQARAIQE 93 (723)
Q Consensus 85 yk~A~~Le~ 93 (723)
|..|..+..
T Consensus 290 yelank~lh 298 (418)
T KOG1828|consen 290 YELANKQLH 298 (418)
T ss_pred HHHHHhhhh
Confidence 999988866
No 51
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=97.83 E-value=4.1e-06 Score=97.75 Aligned_cols=90 Identities=26% Similarity=0.417 Sum_probs=81.0
Q ss_pred HHHccCCCCcccCCCCCC--CCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHH
Q 004926 13 KLQKKDTYGVYAEPVDPE--ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHKQARA 90 (723)
Q Consensus 13 ~L~k~d~s~pF~ePVd~e--elPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS~Iyk~A~~ 90 (723)
.+.++..+|.|..||+.. .+++||++|++|||+++|+.++.+..|.+..++.+|+..+|.||..||...-.++..+..
T Consensus 3 ~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~ 82 (640)
T KOG1474|consen 3 EARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQS 82 (640)
T ss_pred ccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhcccc
Confidence 456788899999999965 479999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 004926 91 IQELAKKKFHRL 102 (723)
Q Consensus 91 Le~lfek~~kkL 102 (723)
++.++.+.....
T Consensus 83 ~~~~~~~~~~~~ 94 (640)
T KOG1474|consen 83 LEKLFPKKLRSM 94 (640)
T ss_pred chhhcccccccc
Confidence 998876655443
No 52
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=96.45 E-value=0.00096 Score=73.20 Aligned_cols=92 Identities=32% Similarity=0.448 Sum_probs=81.9
Q ss_pred HHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHH
Q 004926 11 LDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHKQARA 90 (723)
Q Consensus 11 Ld~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS~Iyk~A~~ 90 (723)
+..+..+-..|+|..+++....|+|+++|..+|++.+.+.++..+.|+...+|+.|..+++.||..||+....+++.+..
T Consensus 272 i~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (371)
T COG5076 272 ITNSQAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANV 351 (371)
T ss_pred ccccccccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccc
Confidence 33334456678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 004926 91 IQELAKKKFHRL 102 (723)
Q Consensus 91 Le~lfek~~kkL 102 (723)
+...+...+...
T Consensus 352 ~~~~~~~~~~~~ 363 (371)
T COG5076 352 LEDFVIKKTRLI 363 (371)
T ss_pred hhhhHhhhhhhh
Confidence 988877665443
No 53
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=95.20 E-value=0.023 Score=54.78 Aligned_cols=64 Identities=23% Similarity=0.320 Sum_probs=48.8
Q ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 004926 42 PMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAG 105 (723)
Q Consensus 42 PMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS~Iyk~A~~Le~lfek~~kkL~~e 105 (723)
|.||.-|++||+.|.|+++.+|.+||..|+.-++.=.+....+-+.-..++-+|.+.++.+-..
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~W 122 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPW 122 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhccc
Confidence 8999999999999999999999999999999887766555554454444555555555554433
No 54
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=83.30 E-value=0.6 Score=56.36 Aligned_cols=60 Identities=17% Similarity=0.287 Sum_probs=48.9
Q ss_pred hcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHH
Q 004926 38 VIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHKQARAIQELAKK 97 (723)
Q Consensus 38 IIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS~Iyk~A~~Le~lfek 97 (723)
--.-|..|..|+.+|++..|++.+.|..|+..|.+||.+|.+-+.-+-..+..|...|..
T Consensus 1049 ~fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~ 1108 (1113)
T KOG0644|consen 1049 RFPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDR 1108 (1113)
T ss_pred CCCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhh
Confidence 356689999999999999999999999999999999999998776555445555444433
No 55
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=77.51 E-value=1.9 Score=53.81 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=56.5
Q ss_pred CCCcccCCCCCCC-----CCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHH--HHHHHHHhhhhcCCCC
Q 004926 19 TYGVYAEPVDPEE-----LPDYHDVIENPMDFTTVRKKLANGSYSSLDQFES--DVFLICTNAMQYNAPD 81 (723)
Q Consensus 19 ~s~pF~ePVd~ee-----lPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~--DV~LIf~NA~~YN~pd 81 (723)
....|..|++... +++|-++|+.+||+...-.|+..+.|.++.+|.. ++.|||.|+..||+..
T Consensus 532 ~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 532 SSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred cccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 3557888887543 4699999999999999999999999999999999 9999999999999975
No 56
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=64.28 E-value=1.3 Score=52.50 Aligned_cols=75 Identities=9% Similarity=0.015 Sum_probs=68.5
Q ss_pred CcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 004926 21 GVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHKQARAIQELA 95 (723)
Q Consensus 21 ~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS~Iyk~A~~Le~lf 95 (723)
..|...++.+.+++||.+++=+|.++.+.+++..+.|.....|..|+.+.+.|+-.|+....-++.++..|.+..
T Consensus 214 er~w~~~dg~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~d 288 (629)
T KOG1827|consen 214 ERLWKLPDGEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEED 288 (629)
T ss_pred cccccCcccccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcccccccc
Confidence 467778888999999999999999999999999999999999999999999999999999888888888776543
No 57
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=49.97 E-value=4.5 Score=49.36 Aligned_cols=71 Identities=20% Similarity=0.231 Sum_probs=57.9
Q ss_pred ccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCC--------------C----------CHHH------HHHHHHHHHH
Q 004926 23 YAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSY--------------S----------SLDQ------FESDVFLICT 72 (723)
Q Consensus 23 F~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y--------------~----------SieE------F~~DV~LIf~ 72 (723)
|.-++|....|-|.-+...|.+|+|++..|.+..| . ++.+ ...-+.+|-.
T Consensus 86 lv~~~d~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~~ 165 (1113)
T KOG0644|consen 86 LVPMLDKPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIGC 165 (1113)
T ss_pred hccCcCCCCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCccccc
Confidence 45577888899999999999999999999999887 2 3333 6677889999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHH
Q 004926 73 NAMQYNAPDTVYHKQARAIQEL 94 (723)
Q Consensus 73 NA~~YN~pdS~Iyk~A~~Le~l 94 (723)
||..++.+++ +++.++.+.++
T Consensus 166 at~~~akPgt-mvqkmk~ikrL 186 (1113)
T KOG0644|consen 166 ATFSIAKPGT-MVQKMKNIKRL 186 (1113)
T ss_pred ceeeecCcHH-HHHHHHHHHHH
Confidence 9999999999 66666665544
No 58
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=46.07 E-value=5.6 Score=36.65 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=29.7
Q ss_pred ccccCchhhhcccchhhhhhcccCccccCCCCC
Q 004926 196 IVDGNSSLADNNLEKVEELSSAKGLLSKLGRKP 228 (723)
Q Consensus 196 p~earik~IlK~~eK~~D~~sg~~l~~kfgRkP 228 (723)
|+|+|++.|+..+++.+| ..|..+...|.+.|
T Consensus 1 ~~~~~~~~i~~~v~~~~d-~~g~~l~~~F~~~p 32 (104)
T cd05522 1 PYEARIKNILKGLRKERD-ENGRLLTLHFEKLP 32 (104)
T ss_pred CHHHHHHHHHHHHHHHhC-cCCCcccHHHhcCC
Confidence 789999999999999999 78999999999987
No 59
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=35.54 E-value=57 Score=28.22 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=22.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 004926 46 TTVRKKLANGSYSSLDQFESDVFLICT 72 (723)
Q Consensus 46 sTIkkKLkng~Y~SieEF~~DV~LIf~ 72 (723)
..|+++++.|.|.+.+|+++|..+++.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 458999999999999999999866543
No 60
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=25.57 E-value=83 Score=28.06 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=21.1
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHH
Q 004926 46 TTVRKKLANGSYSSLDQFESDVFLIC 71 (723)
Q Consensus 46 sTIkkKLkng~Y~SieEF~~DV~LIf 71 (723)
.-|+.++..|.|.+.+|+++|.-.++
T Consensus 15 ~~i~~~V~sG~Y~s~SEvvR~aLRll 40 (80)
T PF03693_consen 15 AFIEEQVASGRYSSASEVVREALRLL 40 (80)
T ss_dssp HHHHHHHCTTS-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34899999999999999999975554
Done!