BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004927
(723 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9HAU5|RENT2_HUMAN Regulator of nonsense transcripts 2 OS=Homo sapiens GN=UPF2 PE=1
SV=1
Length = 1272
Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 262/668 (39%), Positives = 377/668 (56%), Gaps = 50/668 (7%)
Query: 61 LKICSLLHQRYKDFSPCLIDGLLKVFFPGKSGEDLDADRNLKAMKKRSTLKLLLELYFIG 120
+ +CSL HQRY DF+P L+ K F E ++ K R+ L+ + EL +G
Sbjct: 223 VHLCSLFHQRYADFAPSLLQVWKKHF------EARKEEKTPNITKLRTDLRFIAELTIVG 276
Query: 121 IIEDSSIFINIIKDLTSIEHLKDRDTTQTNLTLLASFARQ-GRIFLGL---PLSGPGQEI 176
I D I + L +I + DR++ T+++++ SF R G GL + ++
Sbjct: 277 IFTDKEGLSLIYEQLKNIIN-ADRES-HTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKF 334
Query: 177 YEEFFKGLNITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEE 236
F I+ ++++ F+ Y+ ++ + L+ +H L+ E +N +IL++KGELSE+
Sbjct: 335 NLSFPPSEIISPEKQQPFQNLLKEYFTSLTKHLKRDHRELQNTERQNRRILHSKGELSED 394
Query: 237 NSSSYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDVHTTRVTS-GEDA-SPASGKDSSV 294
YE+ SY L N SLA+ LD P +P+D T G D +P + +
Sbjct: 395 RHKQYEEFAMSYQKLLANSQSLADLLDENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDL 454
Query: 295 PEPVWDDEETRAFYECLPDLRAFVPAVLLGEAEHKANEPSVKPLEQPTDPASEPDQGQLA 354
+W+DE+ R FYE L DL+AFVPA+L K NE S + E D
Sbjct: 455 EGGIWEDEDARNFYENLIDLKAFVPAILF-----KDNEKSCQNKESNKD----------- 498
Query: 355 AQDTAEVSADLGASPEGKSVEKGKDKEEKEKEKAKDPDKEKGKGKDKEEKDKEKAKDPDK 414
DT E S E K V D E + + + D + +G D+ A+D K
Sbjct: 499 --DTKEAKE----SKENKEVSSPDDLELELENLEINDDTLELEGGDE-------AEDLTK 545
Query: 415 EKGKEKDTERKVETEKEKLKGVEGTNLDALLQRLPGCVSRDLIDQLTVEFCY-LNSKSNR 473
+ E++ E + + LK + +DA LQ+LP CV+RDLID+ ++FC +N+K+NR
Sbjct: 546 KLLDEQEQEDEEASTGSHLKLI----VDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR 601
Query: 474 KRLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIE 533
K+LVRALF VPR L+LLP+Y+R+VATL CM DV+ L ML +F F + KKDQ+NIE
Sbjct: 602 KKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIE 661
Query: 534 TKIRNIRFIGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETS 593
TK + +RFIGEL KFK+ CLK L DF+HH+I++AC LLETCGRFL+RSPE+
Sbjct: 662 TKNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH 721
Query: 594 IRMANMLEILMRLKNVKNLDPRHVTLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFS 653
+R + +LE +MR K +LD R+VT+VENAYY C PP V K RPPL +Y+RKLL+
Sbjct: 722 LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYK 781
Query: 654 DLDKSSIEHVLRQLRKLPWSDCE--SYLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEF 711
DL K + E VLRQ+RKLPW D E Y++ C + + KY IH +A+L AGL Y ++
Sbjct: 782 DLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV 841
Query: 712 AVAVVDEV 719
+ VVD V
Sbjct: 842 GIHVVDGV 849
Score = 33.5 bits (75), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/124 (20%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 480 LFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNI 539
++NV S+ + + ++A L +DV ++ + E+ + + +I +
Sbjct: 816 IWNVKYNSIHCV---ANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSA 872
Query: 540 RFIGELCKFKIAPAGLVFSCL-------------KACLDDFTH-HNIDVACNLLETCGRF 585
+F+GEL +++ + ++F L + LD H I + C +L+TCG++
Sbjct: 873 KFLGELYNYRMVESAVIFRTLYSFTSFGVNPDGSPSSLDPPEHLFRIRLVCTILDTCGQY 932
Query: 586 LYRS 589
R
Sbjct: 933 FDRG 936
>sp|O13824|NMD2_SCHPO Nonsense-mediated mRNA decay protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=upf2 PE=1 SV=1
Length = 1049
Score = 185 bits (469), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/369 (29%), Positives = 194/369 (52%), Gaps = 3/369 (0%)
Query: 354 AAQDTAEVSADLGASPEGKSVEKGKDKEEKEKEKAKD--PDKEKGKGKDKEEKDKEKAKD 411
A+ T V G E +VE + +++E+ + P+ +G + + E +++
Sbjct: 355 ASSGTNSVFNASGERSESANVETAQVWDDREQYFFYEVFPNFNEGSIAEMKSSIYESSQE 414
Query: 412 PDKEKGKEKDTERKVETEKEKLKGVE-GTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSK 470
+ + E ++ L + + +D L +LP VS +L +++ +EF LN+K
Sbjct: 415 GIRSSSENNKKEDDLKDSTGDLNTTQVSSRVDNFLLKLPSMVSLELTNEMALEFYDLNTK 474
Query: 471 SNRKRLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQM 530
++R RL++AL +PRTS L+PYY R+ LS + S+ L+ F +I++K +
Sbjct: 475 ASRNRLIKALCTIPRTSSFLVPYYVRLARILSQLSSEFSTSLVDHARHSFKRMIHRKAKH 534
Query: 531 NIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSP 590
+T++ +R+I EL KF++ P +VF C K C+++FT +++V LLE+CGRFL R P
Sbjct: 535 EYDTRLLIVRYISELTKFQLMPFHMVFECYKLCINEFTPFDLEVLALLLESCGRFLLRYP 594
Query: 591 ETSIRMANMLEILMRLKNVKNLDPRHVTLVENAYYLCKPPERSARVSKVRPPLHQYIRKL 650
ET ++M + LE + + K L + ++ENA + PP+R VSK + +++ L
Sbjct: 595 ETKLQMQSFLEAIQKKKLASALASQDQLVLENALHFVNPPKRGIIVSKKKSLKEEFLYDL 654
Query: 651 LFSDLDKSSIEHVLRQLRKLPWSDCESYLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDE 710
+ L ++ L LRK W D L M+V KY ++ +A L + L ++H E
Sbjct: 655 IQIRLKDDNVFPTLLLLRKFDWKDDYQILYNTIMEVWNIKYNSLNALARLLSALYKFHPE 714
Query: 711 FAVAVVDEV 719
F + V+D+
Sbjct: 715 FCIHVIDDT 723
>sp|P38798|NMD2_YEAST Nonsense-mediated mRNA decay protein 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NMD2 PE=1 SV=2
Length = 1089
Score = 122 bits (307), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 86/308 (27%), Positives = 151/308 (49%), Gaps = 14/308 (4%)
Query: 420 KDTERKVETEKEKLKGVEGTNLDALLQRLPGCVSRDLIDQLTVEF--CYLNSKSNRKRLV 477
K E ++ EK V N++ L +D+ID L+ + YL++K+ R R++
Sbjct: 355 KTVEESQSSKTEKDSNVNSKNINLFFTDLEMADCKDIIDDLSNRYWSSYLDNKATRNRIL 414
Query: 478 RALFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIR 537
+ F + LP YSR +AT S M ++ S I L+ F ++ +++N+ +
Sbjct: 415 K--FFMETQDWSKLPVYSRFIATNSKYMPEIVSEFINYLDNGFRSQLHS-NKINV----K 467
Query: 538 NIRFIGELCKFKIAPAGLVFSCLKACLDDF-THHNIDVACNLLETCGRFLYRSPETSIRM 596
NI F E+ KF++ P+ ++F ++ + +N+++ LLE G+FL PE M
Sbjct: 468 NIIFFSEMIKFQLIPSFMIFHKIRTLIMYMQVPNNVEILTVLLEHSGKFLLNKPEYKELM 527
Query: 597 ANMLEILMRLKNVKNLDPRHVTLVENAYYLCKPPE-RSARVS-KVRPPLHQYIRKLLFSD 654
M++++ KN + L+ + +EN L PP +S V+ K P Q+ R L+ S+
Sbjct: 528 EKMVQLIKDKKNDRQLNMNMKSALENIITLLYPPSVKSLNVTVKTITPEQQFYRILIRSE 587
Query: 655 LDKSSIEHVLRQLRKLPWSDC--ESYLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFA 712
L +H+++ +RK W D + L F K HK Y I L+ + GL Y +F
Sbjct: 588 LSSLDFKHIVKLVRKAHWDDVAIQKVLFSLFSKPHKISYQNIPLLTKVLGGLYSYRRDFV 647
Query: 713 VAVVDEVC 720
+ +D+V
Sbjct: 648 IRCIDQVL 655
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/318 (21%), Positives = 132/318 (41%), Gaps = 37/318 (11%)
Query: 37 KYIANIYIYTYTLLLGLWLT---LVYFLKICSLLHQRYKD-FSPCLIDGLLKVFFPGKSG 92
KY++ I + LL + ++ ++I S LHQR+ F+ L+ L+ F
Sbjct: 67 KYLSEIIVTVTECLLNVLNKNDDVIAAVEIISGLHQRFNGRFTSPLLGAFLQAF--ENPS 124
Query: 93 EDLDADRN--LKAMKKRSTLKLLLELYFIGIIEDSSIFINIIKDLTSIEHLKDRDTTQTN 150
D++++R+ + + + L++ ELY +G+ ++ I+ +I + + T + +
Sbjct: 125 VDIESERDELQRITRVKGNLRVFTELYLVGVFRT----LDDIESKDAIPNFLQKKTGRKD 180
Query: 151 LTLLASFARQ---GRIFLGL-------------PLSGPGQEIYEEFFKGLNITADQKKIF 194
LL S R+ + LG PL +++ + + +F
Sbjct: 181 -PLLFSILREILNYKFKLGFTTTIATAFIKKFAPLFRDDDNSWDDLIYDSKLKGALQSLF 239
Query: 195 KKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENSSSYEKLRKSYDHLYRN 254
K + EL H + +++ E+ K G+L +E Y+KL + +
Sbjct: 240 KNFIDATFARATEL----HKKVNKLQREHQKCQIRTGKLRDEYVEEYDKLLPIFIRFKTS 295
Query: 255 VSSLAEALDMQPPVMPEDVHTTRVTSGEDASPASGKDSSVP-EPVWDDEETRAFYECLPD 313
+L E ++ +PE + E ASP P + +W++E+TR FYE LPD
Sbjct: 296 AITLGEFFKLE---IPELEGASNDDLKETASPMITNQILPPNQRLWENEDTRKFYEILPD 352
Query: 314 LRAFVPAVLLGEAEHKAN 331
+ V + E +N
Sbjct: 353 ISKTVEESQSSKTEKDSN 370
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 49/67 (73%), Gaps = 4/67 (5%)
Query: 372 KSVEKGKDKE-EKEKEKAKDPDKEKGKGKDKE---EKDKEKAKDPDKEKGKEKDTERKVE 427
K+ EK +DKE EK +EK +D + EKG+ KD++ EKD++K +D D++K +EKD ++ E
Sbjct: 812 KAREKDQDKELEKGREKDQDKELEKGQEKDRDKVREKDRDKVRDKDRDKVREKDRDKVRE 871
Query: 428 TEKEKLK 434
+++KL+
Sbjct: 872 KDRDKLR 878
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 48/65 (73%), Gaps = 4/65 (6%)
Query: 372 KSVEKGKDKEE---KEKEKAKDPDKEKGKGKDKE-EKDKEKAKDPDKEKGKEKDTERKVE 427
K EK +DKE+ ++K+++KD +K + K +DKE EKD+EK +D + EKG+EKD ++++E
Sbjct: 740 KEQEKVRDKEQVKGRDKKRSKDLEKCREKDQDKELEKDREKNQDKELEKGREKDQDKELE 799
Query: 428 TEKEK 432
+EK
Sbjct: 800 KGREK 804
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 54/87 (62%), Gaps = 22/87 (25%)
Query: 370 EGKSVEKGKDKE-----EKEKEKAKDPDKEKGKGKDKE-----------EKDKEKAKDPD 413
+ K +EKG++K+ EK+++K +D D++K + KD++ EKD+EK ++ D
Sbjct: 830 QDKELEKGQEKDRDKVREKDRDKVRDKDRDKVREKDRDKVREKDRDKLREKDREKIRERD 889
Query: 414 KEKGKEKDTE------RKVETEKEKLK 434
++KG+EKD + R+ + EKE+LK
Sbjct: 890 RDKGREKDRDKEQVKTREKDQEKERLK 916
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 47/66 (71%), Gaps = 6/66 (9%)
Query: 372 KSVEKGKDKE-EKEKEKAKDPDKEKGKGKDKEEKDKEKAKDPDK----EKGKEKDTERKV 426
K EK +DKE EK +EK +D + EKG+ KD++ K+ EKA++ D+ EKG+EKD ++++
Sbjct: 776 KDREKNQDKELEKGREKDQDKELEKGREKDRD-KEMEKAREKDQDKELEKGREKDQDKEL 834
Query: 427 ETEKEK 432
E +EK
Sbjct: 835 EKGQEK 840
Score = 41.6 bits (96), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 47/64 (73%), Gaps = 2/64 (3%)
Query: 371 GKSVEKGKDKEE-KEKEKAKDPDKEKGKGKDKE-EKDKEKAKDPDKEKGKEKDTERKVET 428
G+ ++ KD E+ +EK++ K+ +K++ K +DKE EK +EK +D + EKG+EKD ++++E
Sbjct: 753 GRDKKRSKDLEKCREKDQDKELEKDREKNQDKELEKGREKDQDKELEKGREKDRDKEMEK 812
Query: 429 EKEK 432
+EK
Sbjct: 813 AREK 816
Score = 40.0 bits (92), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 20/81 (24%)
Query: 372 KSVEKGKDKE-----EKEKEKAKDPDKEKGKGKDK-------EEK--DKEKAKDPDK--- 414
K +EKG+DKE EK++EK +D + EKG+ K++ +EK DKE+ K DK
Sbjct: 700 KELEKGRDKERVKDQEKDQEKGRDKEVEKGRYKERVKDRVKEQEKVRDKEQVKGRDKKRS 759
Query: 415 ---EKGKEKDTERKVETEKEK 432
EK +EKD ++++E ++EK
Sbjct: 760 KDLEKCREKDQDKELEKDREK 780
Score = 39.7 bits (91), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 12/75 (16%)
Query: 374 VEKGKDKEEKEKEKAKDPDKEKG------KGKDKE-----EKDKEKAKDPDKEKGKEKDT 422
VE +DKE+ E+EK D EKG KG+DKE EKD+EK +D + EKG+ K+
Sbjct: 676 VEHNRDKEQ-EQEKVGDKGLEKGREKELEKGRDKERVKDQEKDQEKGRDKEVEKGRYKER 734
Query: 423 ERKVETEKEKLKGVE 437
+ E+EK++ E
Sbjct: 735 VKDRVKEQEKVRDKE 749
Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 6/72 (8%)
Query: 372 KSVEKGKDKE---EKEKEKAKDPDKEKGKGKDKE-EKD--KEKAKDPDKEKGKEKDTERK 425
K +EKG++KE ++KE+ KD +K++ KG+DKE EK KE+ KD KE+ K +D E+
Sbjct: 692 KGLEKGREKELEKGRDKERVKDQEKDQEKGRDKEVEKGRYKERVKDRVKEQEKVRDKEQV 751
Query: 426 VETEKEKLKGVE 437
+K++ K +E
Sbjct: 752 KGRDKKRSKDLE 763
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 8/69 (11%)
Query: 372 KSVEKGKDKE---EKEKEKAKDPDKEKGKGKDKE-----EKDKEKAKDPDKEKGKEKDTE 423
K VEKG+ KE ++ KE+ K DKE+ KG+DK+ EK +EK +D + EK +EK+ +
Sbjct: 724 KEVEKGRYKERVKDRVKEQEKVRDKEQVKGRDKKRSKDLEKCREKDQDKELEKDREKNQD 783
Query: 424 RKVETEKEK 432
+++E +EK
Sbjct: 784 KELEKGREK 792
Score = 37.7 bits (86), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Query: 375 EKGKDKE-EKEKEKAKDPDKEKGKGKDKEEKDKEKAKDPDKEKGKEKDTERKVETEKEKL 433
EK +DKE EK++EK +D + EKG+ KD+ DKE K +K++ KE + R+ + +KE
Sbjct: 767 EKDQDKELEKDREKNQDKELEKGREKDQ---DKELEKGREKDRDKEMEKAREKDQDKELE 823
Query: 434 KGVE 437
KG E
Sbjct: 824 KGRE 827
Score = 33.5 bits (75), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 10/54 (18%)
Query: 375 EKGKDK-EEKEKEKAKDPDKEKGKGKDKE-------EKDKEKA--KDPDKEKGK 418
EK +DK EK++EK ++ D++KG+ KD++ EKD+EK KD DKE+ K
Sbjct: 871 EKDRDKLREKDREKIRERDRDKGREKDRDKEQVKTREKDQEKERLKDRDKEREK 924
>sp|Q6BU84|CWC22_DEBHA Pre-mRNA-splicing factor CWC22 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=CWC22 PE=3 SV=2
Length = 637
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 103/219 (47%), Gaps = 17/219 (7%)
Query: 412 PDKEKGKEKDTERKVETEKEKLKGVEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKS 471
P K K + E+ E+ + ++ L + R + I ++ VE LN +
Sbjct: 23 PAKLKALQTKINNSSESTTEEYQVLQWEQLKRAINRQVNKCNVSNIREIVVELFKLNLQR 82
Query: 472 NRKRLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEF--NFLINKKDQ 529
+ L+R++ T L P Y+ ++A L++ + +V +++ L +F N++ NKK+
Sbjct: 83 GKGLLIRSIMKAQLTDLIFTPIYASLIAVLNSKIPEVGELILNRLLLQFRKNYIKNKKNC 142
Query: 530 MNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRS 589
I + FI L ++ L+ L+ L++ T+ +I++ ++ G++L
Sbjct: 143 ------ISSAIFIVHLINQRVCSEILILQILQLLLENPTNDSIEICVEIMNQVGKYL--- 193
Query: 590 PETSIRMANMLEILMRLKNV----KNLDPRHVTLVENAY 624
E S+ NM I RL+++ ++++ R L+EN +
Sbjct: 194 QENSVAANNM--IFNRLRSILHENEDINDRSQFLIENLF 230
>sp|P0CM97|CWC22_CRYNB Pre-mRNA-splicing factor CWC22 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=CWC22 PE=3
SV=1
Length = 831
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 7/166 (4%)
Query: 425 KVETEKEKLKG-VEGTNLDALLQRLPGCVSR---DLIDQLTVEFCYLNSKSNRKRLVRAL 480
+ E K+K + + DAL + + G +++ I + E N R R++
Sbjct: 153 QAEAAKDKTSAEYQRISWDALKKSINGLINKVNISNIKHIVPELFGENLIRGRGLFARSV 212
Query: 481 FNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNIR 540
+SL P ++ +VA ++T + V +++ L +F + D+
Sbjct: 213 MRAQASSLPFTPVFAALVAIINTKLPQVGELVLIRLISQFRRAYKRNDKTVCHA---TST 269
Query: 541 FIGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFL 586
FI LC +A + L CLD T +I+VA + G+FL
Sbjct: 270 FIAHLCNQYVAHEIVALQILLLCLDRPTDDSIEVAVGFMREVGQFL 315
>sp|P0CM96|CWC22_CRYNJ Pre-mRNA-splicing factor CWC22 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=CWC22 PE=3 SV=1
Length = 831
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 7/166 (4%)
Query: 425 KVETEKEKLKG-VEGTNLDALLQRLPGCVSR---DLIDQLTVEFCYLNSKSNRKRLVRAL 480
+ E K+K + + DAL + + G +++ I + E N R R++
Sbjct: 153 QAEAAKDKTSAEYQRISWDALKKSINGLINKVNISNIKHIVPELFGENLIRGRGLFARSV 212
Query: 481 FNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNIR 540
+SL P ++ +VA ++T + V +++ L +F + D+
Sbjct: 213 MRAQASSLPFTPVFAALVAIINTKLPQVGELVLIRLISQFRRAYKRNDKTVCHA---TST 269
Query: 541 FIGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFL 586
FI LC +A + L CLD T +I+VA + G+FL
Sbjct: 270 FIAHLCNQYVAHEIVALQILLLCLDRPTDDSIEVAVGFMREVGQFL 315
>sp|Q6C8C5|CWC22_YARLI Pre-mRNA-splicing factor CWC22 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=CWC22 PE=3 SV=1
Length = 954
Score = 39.7 bits (91), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 8/161 (4%)
Query: 428 TEKEKLKGVEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKRLVRALFNVPRTS 487
T KE + ++ NL + L VS I + E N R R++ +
Sbjct: 211 TSKE-FQKIQFDNLKKAINSLVNKVSAQNIRDIAGEIFTHNLIRGRGLFCRSVMTAQSLA 269
Query: 488 LELLPYYSRMVATLSTCMKDVSSMLIQMLEEEF--NFLINKKDQMNIETKIRNIRFIGEL 545
L P Y+ + A +++ + V +L++ L +F + N+KD + ++ F+ L
Sbjct: 270 LPYTPVYACLTAIVNSKLPQVGELLVRRLILQFRRGYKRNQKD-----VCLSSVTFLAHL 324
Query: 546 CKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFL 586
C + +A LV L L+ T H+++VA ++ G FL
Sbjct: 325 CNYHVAHEVLVLQLLHLLLETPTDHSVEVAVAFIKESGAFL 365
>sp|A7Y3K2|YCF1_IPOPU Putative membrane protein ycf1 OS=Ipomoea purpurea GN=ycf1-A PE=3
SV=1
Length = 2057
Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 354 AAQDTAEVSADLGASPEGKSVEKGKDKEEKEKEKAKDPDKEKGKGKDKEEKDKEKAKDPD 413
A D + + + E KS + K E + EK + D EK K E D EK + D
Sbjct: 1740 AKSDMKKGTKKSKTNSEKKSKTNSEKKSETDSEKKSETDSEK-----KSETDSEKKSETD 1794
Query: 414 KEKGKEKDTERKVETEKEK 432
EK E D+E+K ET+ EK
Sbjct: 1795 SEKKSETDSEKKSETDSEK 1813
Score = 36.6 bits (83), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 364 DLGASPEGKSVEKGKDKEEKEKEKAKDPDKEKGKGKDKEEKDKEKAKDPDKEKGKEKDTE 423
D S K +K K EK K K K + + K E D EK + D EK E D+E
Sbjct: 1738 DSAKSDMKKGTKKSKTNSEK-KSKTNSEKKSETDSEKKSETDSEKKSETDSEKKSETDSE 1796
Query: 424 RKVETEKEK 432
+K ET+ EK
Sbjct: 1797 KKSETDSEK 1805
>sp|P11387|TOP1_HUMAN DNA topoisomerase 1 OS=Homo sapiens GN=TOP1 PE=1 SV=2
Length = 765
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 17/88 (19%)
Query: 356 QDTAEVSADLGASPEGKSVEKGKDKEEKEKEKAKDPDKEKGKGKDKEEKD---------- 405
+ +++ AD + K +K KD+E + KE K+ D+EK K + E KD
Sbjct: 7 HNDSQIEADFRLNDSHKHKDKHKDREHRHKEHKKEKDREKSKHSNSEHKDSEKKHKEKEK 66
Query: 406 -------KEKAKDPDKEKGKEKDTERKV 426
EK KD K++ KEK E KV
Sbjct: 67 TKHKDGSSEKHKDKHKDRDKEKRKEEKV 94
>sp|Q5BGP1|CWC22_EMENI Pre-mRNA-splicing factor cwc22 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cwc22
PE=3 SV=2
Length = 868
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 49/244 (20%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 357 DTAEVSADLGASPEGKSVEKGKDKEEKEKEKAKDPDKEKGKGKDKEEKDKEKAKDPDKEK 416
DTA+ D+ +++E +E + E+ + ++++ K E++K+ A + EK
Sbjct: 50 DTADADRDVPRIDPERAIE----RERQLAERVRQYEQQEAARKPLTEEEKQAAAKAEYEK 105
Query: 417 -------GKEKDTER----KVETEKEKLKGVEGTNLDALLQRLPGCVSR---DLIDQLTV 462
G R + + + K + +AL + + G +++ I +
Sbjct: 106 LLNMRSGGTYIPPARLRALQAQITDKTSKEYQRMAWEALKKSINGLINKVNVSNIKYIVP 165
Query: 463 EFCYLNSKSNRKRLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNF 522
E N R R++ SL P Y+ M A ++T + V +L+ L +F
Sbjct: 166 ELFGENLVRGRGLFCRSIMKAQAASLPFTPIYAAMAAIVNTKLPQVGELLLSRLIIQFRK 225
Query: 523 LINKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETC 582
+ D+ I + FI LC ++ L L L T ++++A L
Sbjct: 226 AFKRNDKA---VCISSTTFIAHLCNQQVVHEMLAAQILLLLLHKPTDDSVEIAVGLTREV 282
Query: 583 GRFL 586
G+ L
Sbjct: 283 GQHL 286
>sp|P35611|ADDA_HUMAN Alpha-adducin OS=Homo sapiens GN=ADD1 PE=1 SV=2
Length = 737
Score = 34.3 bits (77), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 58/147 (39%), Gaps = 31/147 (21%)
Query: 254 NVSSLAEALDMQPPVMPEDVHTTRVTSGEDASPASGKDSSVPEPV-WDDEETRAFYECLP 312
N+ E + PP P H T P ++ VPEP DD + F LP
Sbjct: 589 NLDEAREQKEKSPPDQPAVPHPPPST------PIKLEEDLVPEPTTGDDSDAATFKPTLP 642
Query: 313 DLRAFVPAVLLG----EAEHKANEPSVKPLEQPTDPASEPDQGQLAAQDTAEVSADLGAS 368
DL P+ LG E E +A+ P P E PT+ + EP A D A V+ + S
Sbjct: 643 DLSPDEPSEALGFPMLEKEEEAHRPP-SPTEAPTEASPEP------APDPAPVAEEAAPS 695
Query: 369 PEGKSVEKGKDKEEKEKEKAKDPDKEK 395
+VE+G A DP +
Sbjct: 696 ----AVEEGA---------AADPGSDG 709
>sp|P41512|TOP1_XENLA DNA topoisomerase 1 OS=Xenopus laevis GN=top1 PE=2 SV=1
Length = 829
Score = 33.9 bits (76), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 20/80 (25%)
Query: 378 KDKEEKEKEKAKDPDKEKGKGKDKE--------------------EKDKEKAKDPDKEKG 417
KDKE + KE KD D+EK K + E EKD EK ++ D EK
Sbjct: 26 KDKEHRHKEHKKDKDREKSKHNNSEHRDPSEKKHKDKHKNNDKHREKDGEKHRERDGEKH 85
Query: 418 KEKDTERKVETEKEKLKGVE 437
++K+ E+ + EK K K +E
Sbjct: 86 RDKNGEKHRDGEKHKEKDIE 105
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 267,779,249
Number of Sequences: 539616
Number of extensions: 12038940
Number of successful extensions: 132362
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 1725
Number of HSP's that attempted gapping in prelim test: 78445
Number of HSP's gapped (non-prelim): 26611
length of query: 723
length of database: 191,569,459
effective HSP length: 125
effective length of query: 598
effective length of database: 124,117,459
effective search space: 74222240482
effective search space used: 74222240482
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)