Query 004927
Match_columns 723
No_of_seqs 136 out of 190
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 15:11:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004927.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004927hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2051 Nonsense-mediated mRNA 100.0 2E-147 5E-152 1263.2 39.4 657 15-722 44-711 (1128)
2 smart00543 MIF4G Middle domain 99.8 1.1E-20 2.3E-25 186.7 13.0 186 440-630 3-200 (200)
3 PF02854 MIF4G: MIF4G domain; 99.7 1.1E-17 2.4E-22 165.0 9.1 187 440-627 3-206 (209)
4 PF02854 MIF4G: MIF4G domain; 98.2 2E-06 4.3E-11 84.9 6.4 150 10-160 5-157 (209)
5 smart00543 MIF4G Middle domain 98.1 1.4E-05 3.1E-10 79.0 10.9 144 16-165 11-155 (200)
6 KOG2140 Uncharacterized conser 98.1 4.1E-06 8.8E-11 93.9 6.8 161 446-609 169-347 (739)
7 KOG2051 Nonsense-mediated mRNA 98.0 1.4E-05 3E-10 95.6 9.0 140 487-629 679-836 (1128)
8 KOG2141 Protein involved in hi 97.7 0.00052 1.1E-08 79.9 14.6 213 439-657 321-545 (822)
9 KOG0401 Translation initiation 93.7 0.03 6.5E-07 69.5 1.8 90 536-625 477-568 (970)
10 PF02847 MA3: MA3 domain; Int 79.0 6.4 0.00014 35.8 6.7 107 9-123 6-113 (113)
11 PF05918 API5: Apoptosis inhib 74.8 8.3 0.00018 45.5 7.5 264 439-710 44-349 (556)
12 smart00544 MA3 Domain in DAP-5 55.5 35 0.00077 31.0 6.4 105 10-122 7-112 (113)
13 cd07599 BAR_Rvs167p The Bin/Am 42.9 77 0.0017 32.6 7.2 72 200-271 107-181 (216)
14 KOG1104 Nuclear cap-binding co 42.1 24 0.00053 42.6 3.7 91 472-566 64-155 (759)
15 PRK00083 frr ribosome recyclin 40.1 3.2E+02 0.007 27.9 11.0 70 186-259 105-175 (185)
16 PF12348 CLASP_N: CLASP N term 35.4 4.3E+02 0.0093 26.7 11.3 70 17-86 17-103 (228)
17 PF13801 Metal_resist: Heavy-m 34.0 1.1E+02 0.0023 27.4 5.9 28 183-210 39-66 (125)
18 cd00520 RRF Ribosome recycling 33.1 4.7E+02 0.01 26.5 10.8 70 186-259 101-171 (179)
19 PF15007 CEP44: Centrosomal sp 33.0 2.2E+02 0.0049 27.6 8.0 113 102-224 5-127 (131)
20 cd05136 RasGAP_DAB2IP The DAB2 31.5 2.1E+02 0.0047 31.5 8.7 140 69-232 1-167 (309)
21 PF12921 ATP13: Mitochondrial 31.3 89 0.0019 29.8 5.1 43 40-83 52-95 (126)
22 COG0233 Frr Ribosome recycling 30.8 4.9E+02 0.011 26.9 10.4 84 165-255 89-173 (187)
23 KOG3384 Selenoprotein [General 30.7 32 0.0007 33.5 1.9 37 557-594 57-95 (154)
24 PRK09458 pspB phage shock prot 28.6 1.3E+02 0.0029 26.5 5.1 40 230-269 33-72 (75)
25 KOG2229 Protein required for a 25.5 6.5E+02 0.014 30.0 11.3 137 497-689 2-153 (616)
26 KOG2147 Nucleolar protein invo 25.2 2E+02 0.0044 35.2 7.5 43 437-480 394-440 (823)
27 TIGR00496 frr ribosome recycli 24.2 7.6E+02 0.016 25.0 12.0 70 186-259 96-166 (176)
28 PF04147 Nop14: Nop14-like fam 24.0 1.5E+03 0.033 28.5 16.8 24 608-631 601-624 (840)
29 PRK11546 zraP zinc resistance 22.4 7.2E+02 0.016 24.6 9.5 22 186-207 44-65 (143)
No 1
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=100.00 E-value=2.4e-147 Score=1263.21 Aligned_cols=657 Identities=44% Similarity=0.682 Sum_probs=541.6
Q ss_pred eeecCCCCchhhhhhhhhhhHhhhHHHHHHHHHHHhhcccccHHHHHHHHHHHhccccCchHHHHHHHHhhcCCCCCCCc
Q 004927 15 ILVSDDCTKFPFCIKNKSNCICKYIANIYIYTYTLLLGLWLTLVYFLKICSLLHQRYKDFSPCLIDGLLKVFFPGKSGED 94 (723)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~ky~~ei~~~~~e~~~~~~~DI~aaVeI~S~LHQRy~~Ft~~Ll~~l~~~~~~~~~~~~ 94 (723)
.|++.++++|+++|++|| |+|||+||++|++||++| .+||+|||++||++||||++|+++|+.+|+++|. .+.
T Consensus 44 ~~t~~~~dsli~els~ln--LsKyi~Ei~a~ivE~klK-~~dv~~~v~l~s~~h~~y~~Fs~~~lg~~~k~l~-~~~--- 116 (1128)
T KOG2051|consen 44 LLTAEQYDSLIKELSTLN--LSKYISEITAAIVEAKLK-CSDVPAAVELCSILHARYARFSTAFLGAFLKALE-CKK--- 116 (1128)
T ss_pred HHhhhhhHHHHHHHHhcc--HHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHhccccHHHHHHHHHhcC-Ccc---
Confidence 478999999999999999 999999999999999999 8999999999999999999999999999999994 332
Q ss_pred hhhhhhhhhhhhhhhHHHHHHhhhhhcccChhH---HHHHHHhhhhhccccCcCCcCcchHHHHHHHhh-ccccccCCCC
Q 004927 95 LDADRNLKAMKKRSTLKLLLELYFIGIIEDSSI---FINIIKDLTSIEHLKDRDTTQTNLTLLASFARQ-GRIFLGLPLS 170 (723)
Q Consensus 95 ~ekee~~r~~k~R~~LRll~EL~lvGV~~~~~~---l~~~lk~l~~~~~~~dk~~~~~~l~ll~sF~K~-g~~~lG~~~~ 170 (723)
.|+..|++|.|++||+++||++||||.+.+. +.++|+.+..+ . +.+|++++++.||||| |+++.|++|.
T Consensus 117 --~~k~~n~~klr~dlrl~aEL~~vGVf~~ke~l~~l~~~L~~li~~---~--~~~~~~v~~~~s~~r~~g~~~a~~~~~ 189 (1128)
T KOG2051|consen 117 --YDKIGNITKLRSDLRLFAELYLVGVFDDKEGLSPLRKVLSILIQL---K--DIDHVNVSLIISFYRHCGGSTASIVPQ 189 (1128)
T ss_pred --ccccccchhhhhhhHHHhhhhhheeeeccchhhhHHHHHHHHHhc---c--cCCccchhHHHHHhhhccccccccchH
Confidence 2688999999999999999999999987654 45555555442 2 3369999999999999 9999999886
Q ss_pred CCCh--hh-hHhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHH
Q 004927 171 GPGQ--EI-YEEFFKGLNITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENSSSYEKLRKS 247 (723)
Q Consensus 171 ~~~~--~~-~~~~~~~~~i~~e~q~~~r~ll~~Y~~al~~~l~~~hk~L~~~ek~n~~~~~~~Gel~eE~~~~ye~l~k~ 247 (723)
.-.. +. ..+...+..|++++|+.|+.+|+.||+++++|+.++|+.+++++|+|+++++++|++++++.+.|++++..
T Consensus 190 ~~k~~a~~~~~~~p~~d~i~~dk~kt~~~l~k~y~~sL~~~~~~e~~~l~~~ek~~~r~~~~kgel~~er~~~~e~l~~~ 269 (1128)
T KOG2051|consen 190 FRKMAAELFNGEVPSSDLISNDKKKTFQVLFKDYYDSLMSHLGKEHRELNDMEKENRRALFSKGELSDERTEGYEELQSG 269 (1128)
T ss_pred HHHHHHHHhcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 4110 00 01122234589999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCccccccccCCCC-CCCCCCCCCCCCCCCCChhhhccccccccccccchhhhhhhh
Q 004927 248 YDHLYRNVSSLAEALDMQPPVMPEDVHTTRVTSGEDA-SPASGKDSSVPEPVWDDEETRAFYECLPDLRAFVPAVLLGEA 326 (723)
Q Consensus 248 yEkL~~~~~sLAe~L~~~~P~Lp~~~~~~~~~~g~~~-~~~~~~~~~~~~~~WeDEEtR~FYE~LpDL~~~vPa~Ll~~~ 326 (723)
|+||+.++++|+++||++||+|+++. ++...|... .++.....+. .++|+||+||+|||+||||+++|||.+.+.+
T Consensus 270 ~dkL~~naisl~e~l~~~~p~l~e~s--~~~~~~~~~~~~~~~~s~~i-~~~wsDedtrafye~l~Dlr~~vpa~~~~~n 346 (1128)
T KOG2051|consen 270 LDKLLANAISLSELLGELMPELEEES--DEADPGEEASQMGKNGSLSI-EDLWSDEDTRAFYENLIDLRDFVPATNEGFN 346 (1128)
T ss_pred HHHHHHHHHhHHHHhccccccccccc--ccCCccccccccccccccCc-ccccccHHHHHHHHhhhHHHHhcccccccch
Confidence 99999999999999999999999875 222334332 2222222233 3499999999999999999999998776654
Q ss_pred ccccCCCCCCCCCCCCCCCCCCccchhhhhhhhhhhcccCCCCCCCccccccchhHHhhhhcCCCccccCCCCChhhhhh
Q 004927 327 EHKANEPSVKPLEQPTDPASEPDQGQLAAQDTAEVSADLGASPEGKSVEKGKDKEEKEKEKAKDPDKEKGKGKDKEEKDK 406 (723)
Q Consensus 327 ~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ee~e~~~~~~~~~~~~~~~~~~e~~~ 406 (723)
+.+..++ ++..+.........++.++++++.. .++...+ ..++..++.+ |+..++..+
T Consensus 347 ~~~e~e~---------esn~~~~~~~~~~~~~~e~~~~~~~-~e~~~~~---~~~~~~~~~~---------~~~~~~~~~ 404 (1128)
T KOG2051|consen 347 KSKEVEK---------ESNSEAAMVWDDREQTTEVSSPSNF-MEGSIAE---MKEDLKESKG---------EDEKEELGK 404 (1128)
T ss_pred hhhhhhh---------hhhhhHHhhhcccccceeecCCCcc-ccchhhh---hhhhhhhhhc---------cchhhhcch
Confidence 3222111 1111000000000112222222111 1111100 0111111111 111111111
Q ss_pred hhcCCCccccCcccchhhhhhhhHhhhcCCcchhHHHHHHhCCCCCChhHHHHHHHHHhc-cCChhhHHHHHHHhhccCC
Q 004927 407 EKAKDPDKEKGKEKDTERKVETEKEKLKGVEGTNLDALLQRLPGCVSRDLIDQLTVEFCY-LNSKSNRKRLVRALFNVPR 485 (723)
Q Consensus 407 ~~~~d~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~fl~~Lp~~~nre~ID~~aveF~~-lN~Ka~RkrL~k~l~~v~r 485 (723)
++. ....-+.+.....+...++++.|+.+||+|+||+.||++|++||. +|||++||||+|+||.+||
T Consensus 405 ~~~------------~~~~~~~~~~~~~~~~~~~~d~Fl~~L~~~vsrdliD~~a~ef~~nlNtKa~RkrLvKal~~vpr 472 (1128)
T KOG2051|consen 405 NKQ------------EQDLLESEGDLNTSQVVSNVDCFLLDLPNCVSRDLIDQAAIEFCSNLNTKANRKRLVKALFVVPR 472 (1128)
T ss_pred hhh------------HHHHhhhhhhcchhhHHHHHHHHHccCcchHHHHHHHHHHHHHHHHhccHHHHHHHHHhhhcccc
Confidence 100 000011111222233456899999999999999999999999996 9999999999999999999
Q ss_pred CCCCchhHHHHHHHHhcccchhhHHHHHHHHHHHHHHhhhhcccccchhccceeEeeeecccccccChhhHHHHHHHHhh
Q 004927 486 TSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLD 565 (723)
Q Consensus 486 ~r~dlLP~YaR~vAtl~~~~~Dv~~~l~~~L~~~Fr~~~~kk~~~~~e~k~knirfi~EL~KF~l~p~~~if~~lk~ll~ 565 (723)
+|+|+||||+||||||++|||||+++||++|.++||+++|+|+|+++++|+|+|||||||+||+++|+++||||||+||+
T Consensus 473 t~ldllPyYsRlVAtl~~~M~dvat~lv~~L~~eFr~~~hkK~q~~ietk~~~VrfIsEL~KF~lv~~~~if~cLk~ll~ 552 (1128)
T KOG2051|consen 473 TRLDLLPYYSRLVATLSKCMPDVATELVTMLRKEFRSHLHKKAQINIETKLKIVRFISELCKFQLVPKFEIFSCLKMLLN 552 (1128)
T ss_pred hhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHhhhhhCccChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHhhhcccccCCchhhHHHHHHHHHHHHHhhhcCCChHHHHHHHhhchhcCCCccccccccCCCcHHH
Q 004927 566 DFTHHNIDVACNLLETCGRFLYRSPETSIRMANMLEILMRLKNVKNLDPRHVTLVENAYYLCKPPERSARVSKVRPPLHQ 645 (723)
Q Consensus 566 df~~~nIe~~c~llE~cGrfL~r~pet~~rm~~~Le~m~rkk~~~~L~~r~~~~ieNa~y~~~Pp~~~~~~~k~r~p~~~ 645 (723)
||+||||||+|+|||+|||||||+||||.||..|||+|||+|++++||+|+.++||||||+|+||+++++..|+|||+|+
T Consensus 553 dF~~hnIEm~c~lLE~~GrfLlr~pEt~lrM~~~Le~i~rkK~a~~lDsr~~~~iENay~~~~PPe~~~~~~k~r~p~~e 632 (1128)
T KOG2051|consen 553 DFTHHNIEMACVLLESCGRFLLRSPETKLRMRVFLEQIKRKKRASALDSRQATLIENAYYLCNPPERSKRLSKKRPPMQE 632 (1128)
T ss_pred hcccccHHHHHHHHHhcchhhhcChhHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHhHHhccChhhcccccccCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred HHHHHHHhhcCcccHHHHHHHHHcCCCCChh--HHHHHHhhcccccccCcHHHHHHHHHHHhccccccceeeecccccc
Q 004927 646 YIRKLLFSDLDKSSIEHVLRQLRKLPWSDCE--SYLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVCFC 722 (723)
Q Consensus 646 fir~Li~~~L~~~~~~~v~k~lrKl~W~d~~--~~l~k~~~~~~~~ky~nI~~lA~ll~~L~~~~~~~~v~vVD~vl~~ 722 (723)
|||+|||.+|++.|++.++++||||||+|++ .|+++||++||+++|+||+++|++|+||++|||+|||+|||.|||-
T Consensus 633 fiR~Li~~dL~k~tvd~~lkllRkl~W~D~e~~~yli~~~~k~w~iky~~i~~lA~llaGL~~y~~~fvi~VID~vlE~ 711 (1128)
T KOG2051|consen 633 FIRYLIRSDLSKDTVDRVLKLLRKLDWSDPEVKQYLISCFSKPWKIKYQNIHALASLLAGLSSYHPEFVIHVIDHVLED 711 (1128)
T ss_pred HHHHHHHHHhccccHHHHHHHHHhcccccHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHhhchhhhhhhHHHHHHH
Confidence 9999999999999999999999999999975 8999999999999999999999999999999999999999999983
No 2
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=99.84 E-value=1.1e-20 Score=186.70 Aligned_cols=186 Identities=25% Similarity=0.426 Sum_probs=165.2
Q ss_pred hHHHHHHhCCCCCChhHHHHHHHHHhcc--CChhhHHHHHHHhhccCCCCCCchhHHHHHHHHhcccchhhHHHHHHHHH
Q 004927 440 NLDALLQRLPGCVSRDLIDQLTVEFCYL--NSKSNRKRLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLE 517 (723)
Q Consensus 440 ~l~~fl~~Lp~~~nre~ID~~aveF~~l--N~Ka~RkrL~k~l~~v~r~r~dlLP~YaR~vAtl~~~~~Dv~~~l~~~L~ 517 (723)
.+..++.+|- .+.++.++.++..+ .++..++.+++.+++........+|+||||++.+++++|+++..+++.+.
T Consensus 3 ~v~~~lnkLs----~~n~~~~~~~l~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~ya~L~~~l~~~~~~f~~~ll~~~~ 78 (200)
T smart00543 3 KVKGLINKLS----PSNFESIIKELLKLNNSDKNLRKYILELIFEKAVEEPNFIPAYARLCALLNAKNPDFGSLLLERLQ 78 (200)
T ss_pred HHHHHHhhCC----HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777774 57888888888853 34589999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcccccchhccceeEeeeecccccccChhhHHHHHHHHhhcCCC-------chHHHHHHHHhhhcccccCCc
Q 004927 518 EEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLDDFTH-------HNIDVACNLLETCGRFLYRSP 590 (723)
Q Consensus 518 ~~Fr~~~~kk~~~~~e~k~knirfi~EL~KF~l~p~~~if~~lk~ll~df~~-------~nIe~~c~llE~cGrfL~r~p 590 (723)
++|+...+..+.........++||||||.+|+++|...+++|++.++.+.+. ++||++|.+|++||++|.+ +
T Consensus 79 ~~f~~~~e~~~~~~~~~~~~~i~fl~eL~~~~~i~~~~i~~~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~~G~~l~~-~ 157 (200)
T smart00543 79 EEFEKGLESEEESDKQRRLGLVRFLGELYNFQVLTSKIILELLKELLNDLTKLDPPRSDFSVECLLSLLPTCGKDLER-E 157 (200)
T ss_pred HHHHHHHHHHHHHhhhhHHhHHHHHHHHHHcccCcHHHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHHHhhHHHcC-c
Confidence 9999865544444556678899999999999999999999999999999877 8999999999999999998 8
Q ss_pred hhhHHHHHHHHHHHHHhhhc---CCChHHHHHHHhhchhcCCC
Q 004927 591 ETSIRMANMLEILMRLKNVK---NLDPRHVTLVENAYYLCKPP 630 (723)
Q Consensus 591 et~~rm~~~Le~m~rkk~~~---~L~~r~~~~ieNa~y~~~Pp 630 (723)
++...|..+++.++.....+ ++++|.+.|+++.+...+|+
T Consensus 158 ~~~~~~~~~l~~l~~~~~~~~~~~~~~r~~~~l~~l~~l~~~~ 200 (200)
T smart00543 158 KSPKLLDEILERLQDYLLKKDKTELSSRLRFMLELLIELRKNK 200 (200)
T ss_pred ccHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHhhCc
Confidence 99999999999999998877 89999999999999887764
No 3
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=99.72 E-value=1.1e-17 Score=165.02 Aligned_cols=187 Identities=27% Similarity=0.431 Sum_probs=158.7
Q ss_pred hHHHHHHhCCCCCChhHHHHHHHHHhccCChhhHHHHHHHhhccCCCCCCchhHHHHHHHHhcccch-hhHHHHHHHHHH
Q 004927 440 NLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKRLVRALFNVPRTSLELLPYYSRMVATLSTCMK-DVSSMLIQMLEE 518 (723)
Q Consensus 440 ~l~~fl~~Lp~~~nre~ID~~aveF~~lN~Ka~RkrL~k~l~~v~r~r~dlLP~YaR~vAtl~~~~~-Dv~~~l~~~L~~ 518 (723)
.+..++.+|....-...++++...++.. ++..++.+++.+++......+..|+|||+++.++..+| +++..+++.+.+
T Consensus 3 ~v~~~lnklt~~n~~~~~~~l~~~~~~~-~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l~~~~~~~f~~~ll~~~~~ 81 (209)
T PF02854_consen 3 KVRGILNKLTPSNFESIIDELIKLNWSD-DPETLKEIVKLIFEKAVEEPNFSPLYARLCAALNSRFPSEFRSLLLNRCQE 81 (209)
T ss_dssp HHHHHHHHCSSTTHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHCCHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 4678899998544444444444333322 67899999999999888888999999999999999999 999999999999
Q ss_pred HHHH-----hhhhcccccchhccceeEeeeecccccccChhhHHHHHHHHhhcCCC--------chHHHHHHHHhhhccc
Q 004927 519 EFNF-----LINKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLDDFTH--------HNIDVACNLLETCGRF 585 (723)
Q Consensus 519 ~Fr~-----~~~kk~~~~~e~k~knirfi~EL~KF~l~p~~~if~~lk~ll~df~~--------~nIe~~c~llE~cGrf 585 (723)
.|.. ............+..++||||||.+|++++...+++|++.++.+... ++|+++|.+|.+||++
T Consensus 82 ~f~~~~~~~~~~~~~~~~~~~~~~~~~fl~eL~~~~vv~~~~i~~~l~~ll~~~~~~~~~~~~~~~ie~~~~lL~~~G~~ 161 (209)
T PF02854_consen 82 EFEERYSNEELEENRQSSKQRRRGNIRFLAELFNFGVVSEKIIFDILRELLSDGTDECQPPPDEENIECLCTLLKTCGKK 161 (209)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTSHHCCHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhhhhhHHHhhHhhccccchhHHHHHHHHHhcccccccCCCcHhHHHHHHHHHHHHHHH
Confidence 9987 22221222334567799999999999999999999999999999888 9999999999999999
Q ss_pred ccCCchhhHHHHHHHHHHHHHhhh---cCCChHHHHHHHhhchhc
Q 004927 586 LYRSPETSIRMANMLEILMRLKNV---KNLDPRHVTLVENAYYLC 627 (723)
Q Consensus 586 L~r~pet~~rm~~~Le~m~rkk~~---~~L~~r~~~~ieNa~y~~ 627 (723)
|.++++++..|..+++.++..... .++++|.+.|+++.+-..
T Consensus 162 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~l~~lr 206 (209)
T PF02854_consen 162 LENSEESPKALDEIFERLQKYANSKKDPNLSSRIRFMLEDLIELR 206 (209)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCHSSSSSHHHHHHHHHHHHHH
T ss_pred HhcCCCchhHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999988 799999999999987543
No 4
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=98.22 E-value=2e-06 Score=84.88 Aligned_cols=150 Identities=16% Similarity=0.265 Sum_probs=111.7
Q ss_pred hhhhheeecCCCCchhhhhhhhhhhH-hhhHHHHHHHHHHHhhcccccHHHHHHHHHHHhcccc-CchHHHHHHHHhhcC
Q 004927 10 QLIMFILVSDDCTKFPFCIKNKSNCI-CKYIANIYIYTYTLLLGLWLTLVYFLKICSLLHQRYK-DFSPCLIDGLLKVFF 87 (723)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l-~ky~~ei~~~~~e~~~~~~~DI~aaVeI~S~LHQRy~-~Ft~~Ll~~l~~~~~ 87 (723)
+.++-=|+..|.+.....+.++..+. ..++..|+..+.+.....+..++..+.+|+.+|+++. +|...++..++..|.
T Consensus 5 ~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l~~~~~~~f~~~ll~~~~~~f~ 84 (209)
T PF02854_consen 5 RGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPLYARLCAALNSRFPSEFRSLLLNRCQEEFE 84 (209)
T ss_dssp HHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 34555577888889999987777444 4588888888888766657999999999999999999 999999999999885
Q ss_pred CCCCCCchhhhhhhhhhhhhhhHHHHHHhhhhhcccChhHHHHHHHhhhhhccccC-cCCcCcchHHHHHHHhh
Q 004927 88 PGKSGEDLDADRNLKAMKKRSTLKLLLELYFIGIIEDSSIFINIIKDLTSIEHLKD-RDTTQTNLTLLASFARQ 160 (723)
Q Consensus 88 ~~~~~~~~ekee~~r~~k~R~~LRll~EL~lvGV~~~~~~l~~~lk~l~~~~~~~d-k~~~~~~l~ll~sF~K~ 160 (723)
.+...+..+..+...-.|.+..+||++|||..||++.. .++.++..|+...+... ......++-++..++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~fl~eL~~~~vv~~~-~i~~~l~~ll~~~~~~~~~~~~~~~ie~~~~lL~~ 157 (209)
T PF02854_consen 85 ERYSNEELEENRQSSKQRRRGNIRFLAELFNFGVVSEK-IIFDILRELLSDGTDECQPPPDEENIECLCTLLKT 157 (209)
T ss_dssp HHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHH-HHHHHHHHHHHHTSHHCCHHTCHHHHHHHHHHHHH
T ss_pred HhhhhhhHHHHHHHHHHHHhhhhhHHHhhHhhccccch-hHHHHHHHHHhcccccccCCCcHhHHHHHHHHHHH
Confidence 31111123344556667889999999999999999855 56677777765421100 01235788899999988
No 5
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=98.15 E-value=1.4e-05 Score=78.96 Aligned_cols=144 Identities=17% Similarity=0.245 Sum_probs=103.5
Q ss_pred eecCCCCchhhhhhhhhhhHhhhHHHHHHHHHHHhhcccccHHHHHHHHHHHhccccCchHHHHHHHHhhcCCCCCCCch
Q 004927 16 LVSDDCTKFPFCIKNKSNCICKYIANIYIYTYTLLLGLWLTLVYFLKICSLLHQRYKDFSPCLIDGLLKVFFPGKSGEDL 95 (723)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~ky~~ei~~~~~e~~~~~~~DI~aaVeI~S~LHQRy~~Ft~~Ll~~l~~~~~~~~~~~~~ 95 (723)
|+.+|.+....+|..+.........+++..+++....-+.-+++.+.+|+.||+++++|...+++.+...|... .
T Consensus 11 Ls~~n~~~~~~~l~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~ya~L~~~l~~~~~~f~~~ll~~~~~~f~~~-----~ 85 (200)
T smart00543 11 LSPSNFESIIKELLKLNNSDKNLRKYILELIFEKAVEEPNFIPAYARLCALLNAKNPDFGSLLLERLQEEFEKG-----L 85 (200)
T ss_pred CCHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H
Confidence 45667777777776666444456666666666666555678999999999999999999999999999988421 2
Q ss_pred hhhhhhhhhhhhhhHHHHHHhhhhhcccChhHHHHHHHhhhhhccccCcCCcCcchHHHHHHHhh-ccccc
Q 004927 96 DADRNLKAMKKRSTLKLLLELYFIGIIEDSSIFINIIKDLTSIEHLKDRDTTQTNLTLLASFARQ-GRIFL 165 (723)
Q Consensus 96 ekee~~r~~k~R~~LRll~EL~lvGV~~~~~~l~~~lk~l~~~~~~~dk~~~~~~l~ll~sF~K~-g~~~l 165 (723)
+..+.....+.+..+||++|||.+|+++.. .++.++..+++.-...+......++-++..++.. |..+.
T Consensus 86 e~~~~~~~~~~~~~i~fl~eL~~~~~i~~~-~i~~~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~~G~~l~ 155 (200)
T smart00543 86 ESEEESDKQRRLGLVRFLGELYNFQVLTSK-IILELLKELLNDLTKLDPPRSDFSVECLLSLLPTCGKDLE 155 (200)
T ss_pred HHHHHHhhhhHHhHHHHHHHHHHcccCcHH-HHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHHHhhHHHc
Confidence 233445567789999999999999999865 4567888776532111111234688899999998 44333
No 6
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=98.12 E-value=4.1e-06 Score=93.87 Aligned_cols=161 Identities=22% Similarity=0.349 Sum_probs=133.8
Q ss_pred HhCCCCCChhHHHHHHHHHhccCChhhHHHHHHHhhccCCCCCCchhHHHHHHHHhcccchhhHHHHHHHHHHHHHHhhh
Q 004927 446 QRLPGCVSRDLIDQLTVEFCYLNSKSNRKRLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLIN 525 (723)
Q Consensus 446 ~~Lp~~~nre~ID~~aveF~~lN~Ka~RkrL~k~l~~v~r~r~dlLP~YaR~vAtl~~~~~Dv~~~l~~~L~~~Fr~~~~ 525 (723)
.-|-+-+|.+.|-++..|...-|-=-+|.-+.|..+...-..+...|-||=|||.+|.-||+||+-|...|-=.|+...+
T Consensus 169 nglInkvn~sNi~~ii~eLfqeNiirgRgl~crsv~~aq~asp~ft~vyaALvAviNskfP~IgElLlkrLilqf~r~f~ 248 (739)
T KOG2140|consen 169 NGLINKVNASNIQEIIRELFQENIIRGRGLLCRSVMQAQAASPGFTPVYAALVAVINSKFPQIGELLLKRLILQFKRSFR 248 (739)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCCCcHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhc
Confidence 33444455566666666776677778888888888777777888999999999999999999999999999999999999
Q ss_pred hcccccchhccceeEeeeecccccccChhhHHHHHHHHhhcCCCchHHHHHHHHhhhcccc------------------c
Q 004927 526 KKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFL------------------Y 587 (723)
Q Consensus 526 kk~~~~~e~k~knirfi~EL~KF~l~p~~~if~~lk~ll~df~~~nIe~~c~llE~cGrfL------------------~ 587 (723)
++|+..+ +-.+.||+=|+--.|+-..+++..+-.||.+-+.+-||++-.||--||-+| +
T Consensus 249 RnDk~~c---~~~~kfiahLinq~VahEIv~Leil~lLLe~PTddSvevaI~flkecGakL~~VSpr~~n~IfErlR~IL 325 (739)
T KOG2140|consen 249 RNDKVSC---LNASKFIAHLINQQVAHEIVALEILTLLLERPTDDSVEVAIAFLKECGAKLAEVSPRALNGIFERLRYIL 325 (739)
T ss_pred ccchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhChHHHhHHHHHHHHHH
Confidence 9887543 225789999999999999999999999999999999999999999999554 5
Q ss_pred CCchhhHHHHHHHHHHHHHhhh
Q 004927 588 RSPETSIRMANMLEILMRLKNV 609 (723)
Q Consensus 588 r~pet~~rm~~~Le~m~rkk~~ 609 (723)
...+...|...|+|.|...+++
T Consensus 326 he~Eld~rvqy~iEtlf~iRkd 347 (739)
T KOG2140|consen 326 HEGELDRRVQYMIETLFQIRKD 347 (739)
T ss_pred hHhhHHHHHHHHHHHHHHHHHH
Confidence 5666667778888888776655
No 7
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=98.02 E-value=1.4e-05 Score=95.56 Aligned_cols=140 Identities=21% Similarity=0.361 Sum_probs=108.4
Q ss_pred CCCchhHHHHHHHHhcccchhhHHHHHHHHHHHHHHhhhhcccccchhccceeEeeeecccccccChhhHHHHHHHHhhc
Q 004927 487 SLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLDD 566 (723)
Q Consensus 487 r~dlLP~YaR~vAtl~~~~~Dv~~~l~~~L~~~Fr~~~~kk~~~~~e~k~knirfi~EL~KF~l~p~~~if~~lk~ll~d 566 (723)
+...|+..|+++|-|..|-||++-.+|+..-+.-|.-+.=.+...-..|+-++||+|||.-|.++...+||..|=.++..
T Consensus 679 ky~~i~~lA~llaGL~~y~~~fvi~VID~vlE~Ir~glEin~~~~nQrriA~aryL~ELynfemvds~vIl~tLy~~i~~ 758 (1128)
T KOG2051|consen 679 KYQNIHALASLLAGLSSYHPEFVIHVIDHVLEDIRPGLEINDYVSNQRRIALARYLGELYNFEMVDSDVILNTLYHLISL 758 (1128)
T ss_pred ccccHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHhhhhcCcHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhcc
Confidence 56688999999999999999999888865555555444321222224678999999999999999999999999998887
Q ss_pred CCCch--------------HHHHHHHHhhhcccccCCchhhHHHHHHHHHHHHHh---hh-cCCChHHHHHHHhhchhcC
Q 004927 567 FTHHN--------------IDVACNLLETCGRFLYRSPETSIRMANMLEILMRLK---NV-KNLDPRHVTLVENAYYLCK 628 (723)
Q Consensus 567 f~~~n--------------Ie~~c~llE~cGrfL~r~pet~~rm~~~Le~m~rkk---~~-~~L~~r~~~~ieNa~y~~~ 628 (723)
-..+| |-|+|+||++||+|..|. .|+.+|..+|=-+++.- .. ..||..+. ++|.+-+++
T Consensus 759 g~~~~~~~~~ldppddlFRirlV~~lL~tc~~yf~rg-s~kkkl~~fL~~fq~Y~~iKk~~~Pld~~~~--f~d~~~~~r 835 (1128)
T KOG2051|consen 759 GHFENLTPSALDPPDDLFRIRLVCMLLQTCGPYFTRG-STKKKLDQFLVAFQRYILIKKSQQPLDMEYE--FEDFLELVR 835 (1128)
T ss_pred cccCCCCcccCCChHHHHHHHHHHHHHHHcccccccc-hhHHHHHHHHHHHHHHhhcccccCCCchhhh--HHhhhhhcc
Confidence 44444 899999999999998886 57888999998887753 21 34555544 777777766
Q ss_pred C
Q 004927 629 P 629 (723)
Q Consensus 629 P 629 (723)
|
T Consensus 836 p 836 (1128)
T KOG2051|consen 836 P 836 (1128)
T ss_pred c
Confidence 6
No 8
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=97.71 E-value=0.00052 Score=79.90 Aligned_cols=213 Identities=18% Similarity=0.310 Sum_probs=138.9
Q ss_pred hhHHHHHHhCCCCCChhHHHHHHHHHhccCChhh-----HHHHHHHhhccCCCCCCchhHHHHHHHHhcccc-hhhHHHH
Q 004927 439 TNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSN-----RKRLVRALFNVPRTSLELLPYYSRMVATLSTCM-KDVSSML 512 (723)
Q Consensus 439 ~~l~~fl~~Lp~~~nre~ID~~aveF~~lN~Ka~-----RkrL~k~l~~v~r~r~dlLP~YaR~vAtl~~~~-~Dv~~~l 512 (723)
.+++..|++|..+.=--.|=.+++=|. -|++.. -|-|.+++....|.--.++--|+=++|+|+.-- -+|+.-+
T Consensus 321 rkv~g~LNKLSdaNi~~I~~~i~~Ly~-~~sr~~v~~sLtk~l~~~~~~~~~~ld~~~~~y~AL~~~l~~~vg~eigahf 399 (822)
T KOG2141|consen 321 RKVNGSLNKLSDANIIKIIAGIAELYM-NNSRYDVTSSLTKLLLKALLGPFRLLDSLLTTYAALAAMLHTMVGNEIGAHF 399 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 356777888877543333334444333 122211 233445555555555567788999999997554 6999999
Q ss_pred HHHHHHHHHHhhhhcccccchhcc--ceeEeeeecccccccChhhHHHHHHHHhhcCCCchHHHHHHHHhhhcccccCCc
Q 004927 513 IQMLEEEFNFLINKKDQMNIETKI--RNIRFIGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSP 590 (723)
Q Consensus 513 ~~~L~~~Fr~~~~kk~~~~~e~k~--knirfi~EL~KF~l~p~~~if~~lk~ll~df~~~nIe~~c~llE~cGrfL~r~p 590 (723)
++-.-+.|-.+++......+..|. -.+.|+|.|.-|++|....|++.|+.++.+++--|+|++-.++-+||. .+|.-
T Consensus 400 ~q~~ve~f~~~~~~~~~~~~~~K~~~Nl~~~l~ylynF~ivs~~LiydiI~kl~~~l~e~~ve~ll~ii~~~G~-~LRkD 478 (822)
T KOG2141|consen 400 LQTFVEDFLKSYKEEEEMDLKDKSLNNIVLFLSYLYNFGIVSCSLIYDIIRKLAENLNETNVEALLTIIANCGF-SLRKD 478 (822)
T ss_pred HHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHhhcccHHHHHHHHHHHHhchhhhhHHHHHHHHHHccc-hhcCC
Confidence 999999997666543222222222 248899999999999999999999999999999999999999999997 77764
Q ss_pred hhhHHHHHHHHHHHHHhhhcC---CChHHHHHHHhhchhcCCCccccccccCCCcH-HHHHHHHHHhhcCc
Q 004927 591 ETSIRMANMLEILMRLKNVKN---LDPRHVTLVENAYYLCKPPERSARVSKVRPPL-HQYIRKLLFSDLDK 657 (723)
Q Consensus 591 et~~rm~~~Le~m~rkk~~~~---L~~r~~~~ieNa~y~~~Pp~~~~~~~k~r~p~-~~fir~Li~~~L~~ 657 (723)
+ -.-++.++.-|..+-+... ..+|.+.|+|.....=|.|-+.. ...+|. .+=+|++...-++.
T Consensus 479 D-p~alk~~i~eiq~~a~~a~~s~~~pR~rFmleti~aLKnN~~kki---~~~d~e~ve~lrk~~k~l~~~ 545 (822)
T KOG2141|consen 479 D-PLALKDIITEIQSKAASAKISAISPRLRFMLETISALKNNKLKKI---PYADPERVENLRKLKKALGSS 545 (822)
T ss_pred C-hHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHhcCCCcCC---CcCChHHHHHHHHHHHHHHhc
Confidence 4 3445566665555443333 35799999997776544433221 112232 55556555443433
No 9
>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis]
Probab=93.71 E-value=0.03 Score=69.47 Aligned_cols=90 Identities=28% Similarity=0.444 Sum_probs=83.0
Q ss_pred cceeEeeeecccccccChhhHHHHHHHHhhc--CCCchHHHHHHHHhhhcccccCCchhhHHHHHHHHHHHHHhhhcCCC
Q 004927 536 IRNIRFIGELCKFKIAPAGLVFSCLKACLDD--FTHHNIDVACNLLETCGRFLYRSPETSIRMANMLEILMRLKNVKNLD 613 (723)
Q Consensus 536 ~knirfi~EL~KF~l~p~~~if~~lk~ll~d--f~~~nIe~~c~llE~cGrfL~r~pet~~rm~~~Le~m~rkk~~~~L~ 613 (723)
+-||+|||||-|=++++.-++-+|+..|+.+ ++..|||.+|.|+.|.|.=|=..+++..-|..+...|+-.++....+
T Consensus 477 lgn~~~ig~l~~~~ml~e~i~~~~v~~Ll~~~~~~ee~ie~lc~f~~tig~~lD~~~~s~r~md~~~~~~k~~~~~~~~s 556 (970)
T KOG0401|consen 477 LGNFRFIGELFKLKMLTEKIVHACVQKLLSDDQPSEESIECLCRFLTTIGKKLDFSKESPRNMDEYFNSMKNLKRKPQRS 556 (970)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHhhhhcccccccccCcccchhHHHHHHHHHhhhhhhhc
Confidence 5789999999999999999999999999998 89999999999999999977777777766999999999999999999
Q ss_pred hHHHHHHHhhch
Q 004927 614 PRHVTLVENAYY 625 (723)
Q Consensus 614 ~r~~~~ieNa~y 625 (723)
.+...|+.|..-
T Consensus 557 ~r~RfM~~~~id 568 (970)
T KOG0401|consen 557 NRIRFMLQSVID 568 (970)
T ss_pred cchhhhhccccc
Confidence 999999998774
No 10
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=79.00 E-value=6.4 Score=35.76 Aligned_cols=107 Identities=17% Similarity=0.111 Sum_probs=77.7
Q ss_pred HhhhhheeecCCCCchhhhhhhhhhhHhhhHHHHHHHHHHHhhcc-cccHHHHHHHHHHHhccccCchHHHHHHHHhhcC
Q 004927 9 YQLIMFILVSDDCTKFPFCIKNKSNCICKYIANIYIYTYTLLLGL-WLTLVYFLKICSLLHQRYKDFSPCLIDGLLKVFF 87 (723)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~ky~~ei~~~~~e~~~~~-~~DI~aaVeI~S~LHQRy~~Ft~~Ll~~l~~~~~ 87 (723)
+.++|--+.+.|++-+..+|+.++ +.+|..+++..+++-.... ..+-..+..+++.|.++=.-++..+..+|...+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~--~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~ 83 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELK--LPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLLE 83 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT---GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC--CCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 345666677889999999999998 7799999988777766554 6888899999999998876777788888877662
Q ss_pred CCCCCCchhhhhhhhhhhhhhhHHHHHHhhhhhccc
Q 004927 88 PGKSGEDLDADRNLKAMKKRSTLKLLLELYFIGIIE 123 (723)
Q Consensus 88 ~~~~~~~~ekee~~r~~k~R~~LRll~EL~lvGV~~ 123 (723)
..+.-....|...+..-++++.++.-|+++
T Consensus 84 ------~l~Dl~~D~P~~~~~la~~~~~~i~~~~lp 113 (113)
T PF02847_consen 84 ------SLEDLELDIPKAPEYLAKFLARLIADGILP 113 (113)
T ss_dssp ------HHHHHHHHSTTHHHHHHHHHHHHHHTTSS-
T ss_pred ------HhhhccccchHHHHHHHHHHHHHHHcCCcC
Confidence 111123334566777888888888877753
No 11
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=74.76 E-value=8.3 Score=45.49 Aligned_cols=264 Identities=14% Similarity=0.215 Sum_probs=140.0
Q ss_pred hhHHHHHHhCCCCCChhHHHHHHHHHhccCChhhHHHHHHHhhccCCCCCCchhHHHHHHHHhcccch-hhHHHHHHHHH
Q 004927 439 TNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKRLVRALFNVPRTSLELLPYYSRMVATLSTCMK-DVSSMLIQMLE 517 (723)
Q Consensus 439 ~~l~~fl~~Lp~~~nre~ID~~aveF~~lN~Ka~RkrL~k~l~~v~r~r~dlLP~YaR~vAtl~~~~~-Dv~~~l~~~L~ 517 (723)
+-+-.|+...|++.+ ++||.+ .|.|-=-.-.=|+.-+|.|-.+++...+ |-+|.+-+|.|.+- |=..+ +.++.
T Consensus 44 q~I~kffk~FP~l~~-~Ai~a~-~DLcEDed~~iR~~aik~lp~~ck~~~~---~v~kvaDvL~QlL~tdd~~E-~~~v~ 117 (556)
T PF05918_consen 44 QFIPKFFKHFPDLQE-EAINAQ-LDLCEDEDVQIRKQAIKGLPQLCKDNPE---HVSKVADVLVQLLQTDDPVE-LDAVK 117 (556)
T ss_dssp HHHHHHHCC-GGGHH-HHHHHH-HHHHT-SSHHHHHHHHHHGGGG--T--T----HHHHHHHHHHHTT---HHH-HHHHH
T ss_pred HHHHHHHhhChhhHH-HHHHHH-HHHHhcccHHHHHHHHHhHHHHHHhHHH---HHhHHHHHHHHHHhcccHHH-HHHHH
Confidence 456789999999987 457654 6888766777999999999999996444 56799999998874 32222 12222
Q ss_pred HHHHHh---------------hhhcccccchhccceeEeee--------ecccccccChhhHHHHHHHHhhcCCCchHHH
Q 004927 518 EEFNFL---------------INKKDQMNIETKIRNIRFIG--------ELCKFKIAPAGLVFSCLKACLDDFTHHNIDV 574 (723)
Q Consensus 518 ~~Fr~~---------------~~kk~~~~~e~k~knirfi~--------EL~KF~l~p~~~if~~lk~ll~df~~~nIe~ 574 (723)
+-+..+ +.....-.-..|-|.|.||+ |+.+|+-=..-.|.+.+|.+|.|.+.--.++
T Consensus 118 ~sL~~ll~~d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l 197 (556)
T PF05918_consen 118 NSLMSLLKQDPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFEL 197 (556)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 222222 22100001124677888885 3333333334567788999999999988999
Q ss_pred HHHHHhhhcccccCCchhhHHHHHHHHHHHHHh-hhcCCChHHHHHHHhhchhcCCCccccccccCCCcHHHHHHHHHHh
Q 004927 575 ACNLLETCGRFLYRSPETSIRMANMLEILMRLK-NVKNLDPRHVTLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFS 653 (723)
Q Consensus 575 ~c~llE~cGrfL~r~pet~~rm~~~Le~m~rkk-~~~~L~~r~~~~ieNa~y~~~Pp~~~~~~~k~r~p~~~fir~Li~~ 653 (723)
+-.||-++.-| ....|-.++..|++++...- -...+++.+...|+..++.+.---+-.......+.+-.|+-.-|.-
T Consensus 198 ~m~lL~~lk~~--~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP 275 (556)
T PF05918_consen 198 FMSLLKSLKIY--GGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLP 275 (556)
T ss_dssp HHHHHHTSGG-----GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCC
T ss_pred HHHHHHhCccc--cccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcC
Confidence 98888887754 34456677777888887644 2344565555666665543221000000012223444444444445
Q ss_pred hcCcccHHHHHHHHHcC----CCC---Chh---HHHHHHhh-------cccccccCcHHHHHHHHHHHhccccc
Q 004927 654 DLDKSSIEHVLRQLRKL----PWS---DCE---SYLLKCFM-------KVHKGKYGQIHLIASLTAGLSRYHDE 710 (723)
Q Consensus 654 ~L~~~~~~~v~k~lrKl----~W~---d~~---~~l~k~~~-------~~~~~ky~nI~~lA~ll~~L~~~~~~ 710 (723)
.|+....+.=+++|+-+ |.. |.. ..++..|. ...+.+|+.+.||=-..+.|++..|+
T Consensus 276 ~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~ 349 (556)
T PF05918_consen 276 KLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN 349 (556)
T ss_dssp CTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred ChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence 55554445444555543 221 111 23444443 23567788888888888889888886
No 12
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=55.52 E-value=35 Score=30.97 Aligned_cols=105 Identities=16% Similarity=0.035 Sum_probs=75.6
Q ss_pred hhhhheeecCCCCchhhhhhhhhhhHhhhHHHHHHHHHHHhhcc-cccHHHHHHHHHHHhccccCchHHHHHHHHhhcCC
Q 004927 10 QLIMFILVSDDCTKFPFCIKNKSNCICKYIANIYIYTYTLLLGL-WLTLVYFLKICSLLHQRYKDFSPCLIDGLLKVFFP 88 (723)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~ky~~ei~~~~~e~~~~~-~~DI~aaVeI~S~LHQRy~~Ft~~Ll~~l~~~~~~ 88 (723)
.++|--+++.|+.-...+|+.|. +.+|..|++..+.+..+-- ...-..+..+.+.|+++=.-+...+..+|...+..
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~--~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~~~ 84 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELK--LPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFWRLLED 84 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhC--CCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhh
Confidence 35556678889999999999999 6689999887666654432 36788889999999977667888888888887732
Q ss_pred CCCCCchhhhhhhhhhhhhhhHHHHHHhhhhhcc
Q 004927 89 GKSGEDLDADRNLKAMKKRSTLKLLLELYFIGII 122 (723)
Q Consensus 89 ~~~~~~~ekee~~r~~k~R~~LRll~EL~lvGV~ 122 (723)
- ++ -....+...+..=++++-++.-|++
T Consensus 85 l---~d---l~~D~P~a~~~la~~~a~~v~~~~l 112 (113)
T smart00544 85 I---ED---LELDIPNAWRNLAEFVARLISDGIL 112 (113)
T ss_pred C---hh---hhcccccHHHHHHHHHHHHHHcCCC
Confidence 1 11 1223456667777777777777765
No 13
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=42.94 E-value=77 Score=32.57 Aligned_cols=72 Identities=18% Similarity=0.298 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 004927 200 TYYNAVQELLQAEHTSLRQMENENAKI---LNAKGELSEENSSSYEKLRKSYDHLYRNVSSLAEALDMQPPVMPE 271 (723)
Q Consensus 200 ~Y~~al~~~l~~~hk~L~~~ek~n~~~---~~~~Gel~eE~~~~ye~l~k~yEkL~~~~~sLAe~L~~~~P~Lp~ 271 (723)
.||..+-+.+.+.+.++...++..++. +..+++.+....+.+.++.+.++.-..--..|=+.|-.++|.|-.
T Consensus 107 ~~~~~i~k~IkKR~~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l~~ 181 (216)
T cd07599 107 KYIKKIRKTIKKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEEAKEEYEALNELLKSELPKLLA 181 (216)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 588888888888888888887765543 666788888777777777777777776667777777788887653
No 14
>KOG1104 consensus Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification]
Probab=42.10 E-value=24 Score=42.65 Aligned_cols=91 Identities=16% Similarity=0.262 Sum_probs=77.1
Q ss_pred hHHHHHHHhhccCCCCCCchhHHHHHHHHhcccchhhHHHHHHHHHHHHHHhhhhcccccchhccc-eeEeeeecccccc
Q 004927 472 NRKRLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIR-NIRFIGELCKFKI 550 (723)
Q Consensus 472 ~RkrL~k~l~~v~r~r~dlLP~YaR~vAtl~~~~~Dv~~~l~~~L~~~Fr~~~~kk~~~~~e~k~k-nirfi~EL~KF~l 550 (723)
.|..++..|..+-..-+..+|.||=||--+|.=-+++|.+++.++-.+|.-.++..+- | +.| -+||++-|.-=+|
T Consensus 64 ~~~~iL~~L~~ca~~lP~K~~~yaTLvgllN~kn~~fg~~~v~~~~~~~q~sl~~~~~-n---~ar~llrfL~dL~~~~v 139 (759)
T KOG1104|consen 64 FKSKILDILNTCAVYLPEKITAYATLVGLLNLKNFNFGGEFVEYMIEELQESLKSGNW-N---EARYLLRFLSDLSNCHV 139 (759)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhcCCh-H---HHHHHHHHHHHHhcCCc
Confidence 6778888888887888899999999999999999999999999999999877765321 1 133 3899999999999
Q ss_pred cChhhHHHHHHHHhhc
Q 004927 551 APAGLVFSCLKACLDD 566 (723)
Q Consensus 551 ~p~~~if~~lk~ll~d 566 (723)
++...+...+..+++.
T Consensus 140 l~~~sli~l~esl~~~ 155 (759)
T KOG1104|consen 140 LQADSLINLFESLLDA 155 (759)
T ss_pred cChHHHHHHHHHHHHH
Confidence 9999999999888775
No 15
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=40.07 E-value=3.2e+02 Score=27.88 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHH-HHHHHHHHHHHHHHHHHH
Q 004927 186 ITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENSSSY-EKLRKSYDHLYRNVSSLA 259 (723)
Q Consensus 186 i~~e~q~~~r~ll~~Y~~al~~~l~~~hk~L~~~ek~n~~~~~~~Gel~eE~~~~y-e~l~k~yEkL~~~~~sLA 259 (723)
++.|.|+.+....+.+.+..--.+..-.+...+.- +.+...|++++|....+ +++++.-++....+..+.
T Consensus 105 lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~i----Kk~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~~ 175 (185)
T PRK00083 105 LTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKL----KKLEKDKEISEDELKRAEDEIQKLTDKYIKKIDELL 175 (185)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999876655544333222221 22335789998865544 445566565555555443
No 16
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=35.36 E-value=4.3e+02 Score=26.66 Aligned_cols=70 Identities=16% Similarity=0.111 Sum_probs=41.8
Q ss_pred ecCCCCchhhhhhhhhhhHhhh-----HHHHHHHHH---HHhhcccccH-----HHHHHHHHHHhcccc-CchHH---HH
Q 004927 17 VSDDCTKFPFCIKNKSNCICKY-----IANIYIYTY---TLLLGLWLTL-----VYFLKICSLLHQRYK-DFSPC---LI 79 (723)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~ky-----~~ei~~~~~---e~~~~~~~DI-----~aaVeI~S~LHQRy~-~Ft~~---Ll 79 (723)
++.||+.-...+..|..-+... .+.++..+- .++.++..|. ..|+++++.|.++++ .|.+. ++
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 7899999988888877533333 444444443 5666666665 356788888888885 56655 34
Q ss_pred HHHHhhc
Q 004927 80 DGLLKVF 86 (723)
Q Consensus 80 ~~l~~~~ 86 (723)
..+++.+
T Consensus 97 ~~Ll~~~ 103 (228)
T PF12348_consen 97 PPLLKKL 103 (228)
T ss_dssp HHHHHGG
T ss_pred HHHHHHH
Confidence 4444444
No 17
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=34.05 E-value=1.1e+02 Score=27.35 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=22.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 004927 183 GLNITADQKKIFKKAFHTYYNAVQELLQ 210 (723)
Q Consensus 183 ~~~i~~e~q~~~r~ll~~Y~~al~~~l~ 210 (723)
...+|++++..++.+...|+...-..-.
T Consensus 39 ~l~Lt~eQ~~~l~~~~~~~~~~~~~~r~ 66 (125)
T PF13801_consen 39 MLNLTPEQQAKLRALMDEFRQEMRALRQ 66 (125)
T ss_dssp HS-TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3569999999999999999986664443
No 18
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=33.12 E-value=4.7e+02 Score=26.47 Aligned_cols=70 Identities=17% Similarity=0.232 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHH-HHHHHHHHHHHHHHHHHH
Q 004927 186 ITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENSSSY-EKLRKSYDHLYRNVSSLA 259 (723)
Q Consensus 186 i~~e~q~~~r~ll~~Y~~al~~~l~~~hk~L~~~ek~n~~~~~~~Gel~eE~~~~y-e~l~k~yEkL~~~~~sLA 259 (723)
++.|.|+.+....+.+++..-..+....+...+.-+ -....|++++|....+ +++++..++....+..+.
T Consensus 101 lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~lK----k~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~~ 171 (179)
T cd00520 101 LTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKIK----KLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELL 171 (179)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999998766655543333322222 2335688887655443 455666666555555443
No 19
>PF15007 CEP44: Centrosomal spindle body, CEP44
Probab=33.02 E-value=2.2e+02 Score=27.65 Aligned_cols=113 Identities=17% Similarity=0.198 Sum_probs=65.4
Q ss_pred hhhhhhhhHHHH---HHhhhhhcccC-hhHHHHHHHhhhhhccccCcCCcCcchHHHHHHHhhccccccCCCCCCChhhh
Q 004927 102 KAMKKRSTLKLL---LELYFIGIIED-SSIFINIIKDLTSIEHLKDRDTTQTNLTLLASFARQGRIFLGLPLSGPGQEIY 177 (723)
Q Consensus 102 r~~k~R~~LRll---~EL~lvGV~~~-~~~l~~~lk~l~~~~~~~dk~~~~~~l~ll~sF~K~g~~~lG~~~~~~~~~~~ 177 (723)
++.|++..||.+ .++-.+|+... ...++.++..++. ..+.++...++.+|.+++|-....+.+..+
T Consensus 5 ~l~~L~~~Lr~~~yp~~vd~~~l~~G~p~afLpil~~~L~----------~yS~~va~~l~~~g~eL~~k~D~RF~E~vy 74 (131)
T PF15007_consen 5 NLRRLEQELRSLKYPDEVDYQGLYKGDPSAFLPILHYALL----------SYSTHVARLLVDRGYELYGKNDLRFVESVY 74 (131)
T ss_pred HHHHHHHHHHHCCCCCccCHHHHhcCCHHHHHHHHHHHHH----------cCCHHHHHHHHHcCchhhcCChHHHHHHHH
Confidence 455666666654 47778888764 4567888887642 467888888888888888755433222222
Q ss_pred H----hhhhcCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004927 178 E----EFFKGLNITADQK--KIFKKAFHTYYNAVQELLQAEHTSLRQMENENA 224 (723)
Q Consensus 178 ~----~~~~~~~i~~e~q--~~~r~ll~~Y~~al~~~l~~~hk~L~~~ek~n~ 224 (723)
. ++-....||..+- .-|..-=-.-.-.+.+++.+.|++++..++.+.
T Consensus 75 k~LRdef~YkP~lT~~QF~s~gFAErKi~i~~Di~~~v~~~h~el~r~~~~~~ 127 (131)
T PF15007_consen 75 KLLRDEFNYKPSLTKAQFFSKGFAERKIIIVCDILNLVKKKHKELQRQKKRES 127 (131)
T ss_pred HHHHHHhCCCCCCCHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1 1111122444321 111111112233566788889999998887654
No 20
>cd05136 RasGAP_DAB2IP The DAB2IP family of Ras GTPase-activating proteins includes DAB2IP, nGAP, and Syn GAP. Disabled 2 interactive protein, (DAB2IP; also known as ASK-interacting protein 1 (AIP1)), is a member of the GTPase-activating proteins, down-regulates Ras-mediated signal pathways, and mediates TNF-induced activation of ASK1-JNK signaling pathways. The mechanism by which TNF signaling is coupled to DAB2IP is not known.
Probab=31.50 E-value=2.1e+02 Score=31.45 Aligned_cols=140 Identities=16% Similarity=0.244 Sum_probs=0.0
Q ss_pred ccccCchHHHHHHHHh---hcCCCCCCCchhhhhhhhhhhhhhhHHHHHHhhhhhcccChhHHHHHHHhhhhhccccCc-
Q 004927 69 QRYKDFSPCLIDGLLK---VFFPGKSGEDLDADRNLKAMKKRSTLKLLLELYFIGIIEDSSIFINIIKDLTSIEHLKDR- 144 (723)
Q Consensus 69 QRy~~Ft~~Ll~~l~~---~~~~~~~~~~~ekee~~r~~k~R~~LRll~EL~lvGV~~~~~~l~~~lk~l~~~~~~~dk- 144 (723)
++|.+|...|...... .+.|.-+.. ++|+.++. ||.||...+....++++|...|.-+-.
T Consensus 1 ~~y~~~~~~~~~~~~~l~~~l~~~~~~~--~~~ela~~--------------Lv~if~~~~~~~~~l~~Li~~EI~~~~~ 64 (309)
T cd05136 1 EVYKEFAEYLTSNYARLCEVLEPVLSVR--AKEELACA--------------LVHVLQSTGKAKDFLTDLVMAEVDRCGE 64 (309)
T ss_pred CchHHHHHHHHhhHHHHHHHHHhhCCch--hHHHHHHH--------------HHHHHHhcChHHHHHHHHHHHHHHhccc
Q ss_pred CCc----CcchHH--HHHHHhh-ccccccCCCCCCChhhhHhhhhcCCCC----------------HHHHHHHHHHHHHH
Q 004927 145 DTT----QTNLTL--LASFARQ-GRIFLGLPLSGPGQEIYEEFFKGLNIT----------------ADQKKIFKKAFHTY 201 (723)
Q Consensus 145 ~~~----~~~l~l--l~sF~K~-g~~~lG~~~~~~~~~~~~~~~~~~~i~----------------~e~q~~~r~ll~~Y 201 (723)
+.. ++++.. +..|.|. |..|+ .+....++....-+ ++.+++++.+...+
T Consensus 65 ~~~~lfRgNsl~tK~~~~y~k~~G~~YL--------~~~L~p~I~~ii~~~~~~EiDP~k~~~~~l~~n~~~L~~~~~~~ 136 (309)
T cd05136 65 NERLIFRENTLATKAIEEYLKLVGQDYL--------QDTLGEFIRALYESEENCEVDPSKCSASELPDHQANLRMCCELA 136 (309)
T ss_pred cHHHHHhcCcHHHHHHHHHHHHhhHHHH--------HHHHHHHHHHHHcCCCCcccCccccCchhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 004927 202 YNAVQELLQAEHTSLRQMENENAKILNAKGE 232 (723)
Q Consensus 202 ~~al~~~l~~~hk~L~~~ek~n~~~~~~~Ge 232 (723)
++++..-+.+.=..++.+=+.-++....+|.
T Consensus 137 ~~~I~~S~~~~P~~lR~i~~~lr~~~~~~~~ 167 (309)
T cd05136 137 WCKIINSHCVFPAELREVFASWRERCEDRGR 167 (309)
T ss_pred HHHHHHhHHhCCHHHHHHHHHHHHHHhhhcc
No 21
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=31.34 E-value=89 Score=29.78 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHhcccc-CchHHHHHHHH
Q 004927 40 ANIYIYTYTLLLGLWLTLVYFLKICSLLHQRYK-DFSPCLIDGLL 83 (723)
Q Consensus 40 ~ei~~~~~e~~~~~~~DI~aaVeI~S~LHQRy~-~Ft~~Ll~~l~ 83 (723)
.++..||+.+. ++.+||..|+.++..+-++|. +....+-..++
T Consensus 52 ~~lL~AIv~sf-~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 52 SRLLIAIVHSF-GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred HHHHHHHHHHH-HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 57788999999 559999999999999999997 77766544444
No 22
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=30.78 E-value=4.9e+02 Score=26.87 Aligned_cols=84 Identities=20% Similarity=0.286 Sum_probs=45.4
Q ss_pred ccCCCCCCChhhhHhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHH-HH
Q 004927 165 LGLPLSGPGQEIYEEFFKGLNITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENSSSY-EK 243 (723)
Q Consensus 165 lG~~~~~~~~~~~~~~~~~~~i~~e~q~~~r~ll~~Y~~al~~~l~~~hk~L~~~ek~n~~~~~~~Gel~eE~~~~y-e~ 243 (723)
+|+.|..-|....-. ++ .++.|.|+.+....+.|.+...-.+..-.+...+.- +-+...|+++||....+ ++
T Consensus 89 LglnP~~dG~~IRv~-~P--~lTeErRkelvK~~k~~~EeakvaiRniRrda~d~i----KK~~K~~~isEDe~k~~e~~ 161 (187)
T COG0233 89 LGLNPNNDGNVIRVP-LP--PLTEERRKELVKVAKKYAEEAKVAVRNIRRDANDKI----KKLEKDKEISEDEVKKAEEE 161 (187)
T ss_pred CCCCcCcCCCeEEec-CC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccCCcchHHHHHHHHH
Confidence 677775432221111 11 278999999999999998855433332222222221 12335788887754433 45
Q ss_pred HHHHHHHHHHHH
Q 004927 244 LRKSYDHLYRNV 255 (723)
Q Consensus 244 l~k~yEkL~~~~ 255 (723)
++|..+...+-+
T Consensus 162 iQKlTd~yi~~i 173 (187)
T COG0233 162 IQKLTDEYIKKI 173 (187)
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
No 23
>KOG3384 consensus Selenoprotein [General function prediction only]
Probab=30.71 E-value=32 Score=33.52 Aligned_cols=37 Identities=35% Similarity=0.635 Sum_probs=32.1
Q ss_pred HHHHHHHhhc--CCCchHHHHHHHHhhhcccccCCchhhH
Q 004927 557 FSCLKACLDD--FTHHNIDVACNLLETCGRFLYRSPETSI 594 (723)
Q Consensus 557 f~~lk~ll~d--f~~~nIe~~c~llE~cGrfL~r~pet~~ 594 (723)
=+|++.|.+| |++.-+ -+.++||.||+=|-|.|+.+.
T Consensus 57 ~dClqCC~~d~e~~~~k~-Ya~AILEVC~ckl~~yPqiqa 95 (154)
T KOG3384|consen 57 PDCLQCCADDSEFSMSKV-YAGAILEVCMCKLVRYPQIQA 95 (154)
T ss_pred hHHHHHhhccchhHHhhh-hhHHHHHHHHhhhcccHHHHH
Confidence 3699999997 877777 789999999999999998665
No 24
>PRK09458 pspB phage shock protein B; Provisional
Probab=28.56 E-value=1.3e+02 Score=26.53 Aligned_cols=40 Identities=20% Similarity=0.342 Sum_probs=36.8
Q ss_pred hCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 004927 230 KGELSEENSSSYEKLRKSYDHLYRNVSSLAEALDMQPPVM 269 (723)
Q Consensus 230 ~Gel~eE~~~~ye~l~k~yEkL~~~~~sLAe~L~~~~P~L 269 (723)
.+.++++.++.++++...=+|+..-+++|=.+||.+-|.-
T Consensus 33 ~~~Ls~~d~~~L~~L~~~A~rm~~RI~tLE~ILDae~P~W 72 (75)
T PRK09458 33 SQGLSQEEQQRLAQLTEKAERMRERIQALEAILDAEHPNW 72 (75)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCc
Confidence 4559999999999999999999999999999999999864
No 25
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=25.49 E-value=6.5e+02 Score=29.96 Aligned_cols=137 Identities=22% Similarity=0.347 Sum_probs=77.6
Q ss_pred HHHHhcccchhhHHHHHHHHHHHHHHhhhhcccccchhccceeEeeeecccccccChhhHH---HHHHHHhhcCCCchHH
Q 004927 497 MVATLSTCMKDVSSMLIQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPAGLVF---SCLKACLDDFTHHNID 573 (723)
Q Consensus 497 ~vAtl~~~~~Dv~~~l~~~L~~~Fr~~~~kk~~~~~e~k~knirfi~EL~KF~l~p~~~if---~~lk~ll~df~~~nIe 573 (723)
|||-..+|+|++...+=+.|.+ +++. +- .++|+..=- .||=.|..--+-.-.|
T Consensus 2 F~aqv~~~yp~~~a~FP~el~d----LL~~-~~-------------------~~lp~~Lr~~i~~~LiLLrNk~~i~~~~ 57 (616)
T KOG2229|consen 2 FVAQVCPCYPEVLANFPSELKD----LLRT-NH-------------------TVLPPELREKIVKALILLRNKNLIVAED 57 (616)
T ss_pred chhhcccccHHHHHhhhHHHHH----HHHh-cc-------------------ccCCHHHHHHHHHHHHHHhccCcCCHHH
Confidence 7889999999988777766654 3333 11 234554433 3443333335566778
Q ss_pred HHHHHHhhhcccccCCchhhHHHHHHHHHHHHHhh--hcCCChHHHHHHHhhchhcCCCccccccccCCCcHHHHHHHHH
Q 004927 574 VACNLLETCGRFLYRSPETSIRMANMLEILMRLKN--VKNLDPRHVTLVENAYYLCKPPERSARVSKVRPPLHQYIRKLL 651 (723)
Q Consensus 574 ~~c~llE~cGrfL~r~pet~~rm~~~Le~m~rkk~--~~~L~~r~~~~ieNa~y~~~Pp~~~~~~~k~r~p~~~fir~Li 651 (723)
++..||+ |+|.++++.|---+=.+..-.|+ .++.+ .|++.=++..+
T Consensus 58 LL~lff~-----l~~~~dk~lRkllythiv~~Ikn~n~~~kn---------------------------~klnkslq~~~ 105 (616)
T KOG2229|consen 58 LLELFFP-----LLRCGDKNLRKLLYTHIVTTIKNINKKHKN---------------------------DKLNKSLQAFM 105 (616)
T ss_pred HHHHHHH-----HHhcCchhHHHHHHHHHHHHHHHHHhhccc---------------------------chHHHHHHHHH
Confidence 8888887 78888888764333333322221 11111 12222222233
Q ss_pred HhhcC-------cccHHHHHHHHHcCCCCChh---HHHHHHhhccccc
Q 004927 652 FSDLD-------KSSIEHVLRQLRKLPWSDCE---SYLLKCFMKVHKG 689 (723)
Q Consensus 652 ~~~L~-------~~~~~~v~k~lrKl~W~d~~---~~l~k~~~~~~~~ 689 (723)
|.-|. +..++.++.+-||==|+|.. -....||.++-+|
T Consensus 106 fsml~~~d~~~ak~a~~~~~eL~kr~iW~d~~tV~i~~~acf~~~~ki 153 (616)
T KOG2229|consen 106 FSMLDQSDSTAAKMALDTMIELYKRNIWNDSKTVNIITTACFSKVPKI 153 (616)
T ss_pred HHHHhCCCchhHHHHHHHHHHHHHhcccccchhHHHHHHHHhccCcHH
Confidence 33332 22456677777777799863 3455699988776
No 26
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=25.22 E-value=2e+02 Score=35.24 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=29.2
Q ss_pred cchhHHHHHHhCCCCCChhHHHHHHHHHhccC----ChhhHHHHHHHh
Q 004927 437 EGTNLDALLQRLPGCVSRDLIDQLTVEFCYLN----SKSNRKRLVRAL 480 (723)
Q Consensus 437 ~~~~l~~fl~~Lp~~~nre~ID~~aveF~~lN----~Ka~RkrL~k~l 480 (723)
.+...+.|++-|..|.+.+ .+-+.......| .-.||+||.+++
T Consensus 394 ~Pk~yeef~~Ll~k~s~ed-~~lIVeRI~kchhpkL~egNk~kl~kf~ 440 (823)
T KOG2147|consen 394 CPKNYEEFLALLEKLSLED-MPLIVERIRKCHHPKLKEGNKKKLEKFY 440 (823)
T ss_pred CCcCHHHHHHHHHccChhh-hHHHHHHHHHhcCCccccchHHHHHHHH
Confidence 3457899999999999866 444444433223 337899988775
No 27
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=24.15 E-value=7.6e+02 Score=25.00 Aligned_cols=70 Identities=14% Similarity=0.233 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHH-HHHHHHHHHHHHHHHHHH
Q 004927 186 ITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENSSSY-EKLRKSYDHLYRNVSSLA 259 (723)
Q Consensus 186 i~~e~q~~~r~ll~~Y~~al~~~l~~~hk~L~~~ek~n~~~~~~~Gel~eE~~~~y-e~l~k~yEkL~~~~~sLA 259 (723)
++.|.|+.+....+.+++..--.+....+...+.-+ .+...|+++||....+ +++++..+++...+..+.
T Consensus 96 lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~iK----k~~k~~~iseD~~k~~~~~iQkltd~~i~~id~~~ 166 (176)
T TIGR00496 96 LTEERRKELVKHAKKIAEQAKVAVRNVRRDANDKVK----KLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEIL 166 (176)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999998766655443333222221 2235688997665554 556777777766665544
No 28
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=24.01 E-value=1.5e+03 Score=28.46 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=17.8
Q ss_pred hhcCCChHHHHHHHhhchhcCCCc
Q 004927 608 NVKNLDPRHVTLVENAYYLCKPPE 631 (723)
Q Consensus 608 ~~~~L~~r~~~~ieNa~y~~~Pp~ 631 (723)
-++..-+.-...+.++++.+-|..
T Consensus 601 ~SKR~vPEvinFL~~~L~~~~p~~ 624 (840)
T PF04147_consen 601 LSKRFVPEVINFLLGLLLLLVPEK 624 (840)
T ss_pred HhcccChHHHHHHHHHHHHhCCCc
Confidence 455677788888889888876643
No 29
>PRK11546 zraP zinc resistance protein; Provisional
Probab=22.41 E-value=7.2e+02 Score=24.58 Aligned_cols=22 Identities=18% Similarity=0.498 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 004927 186 ITADQKKIFKKAFHTYYNAVQE 207 (723)
Q Consensus 186 i~~e~q~~~r~ll~~Y~~al~~ 207 (723)
+|+|+|+.+++|.+.|+.....
T Consensus 44 LT~EQQa~~q~I~~~f~~~t~~ 65 (143)
T PRK11546 44 LTTEQQAAWQKIHNDFYAQTSA 65 (143)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999987663
Done!