Query 004927
Match_columns 723
No_of_seqs 136 out of 190
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 10:02:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004927.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004927hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uw4_B UPF2, regulator of nons 99.9 7.4E-24 2.5E-28 218.2 6.1 83 640-722 1-85 (248)
2 1hu3_A EIF4GII; heat repeat, t 99.6 3E-16 1E-20 163.1 10.1 184 438-626 12-236 (260)
3 2vso_E Eukaryotic initiation f 99.5 9.1E-14 3.1E-18 146.2 10.1 183 439-625 38-275 (284)
4 1uw4_B UPF2, regulator of nons 99.5 3.7E-13 1.3E-17 138.7 13.7 187 442-630 5-219 (248)
5 3rk6_A Polyadenylate-binding p 98.9 1.8E-09 6.3E-14 110.7 7.2 184 439-624 21-231 (234)
6 2i2o_A EIF4G-like protein; pro 98.3 2E-07 7E-12 94.9 4.1 148 474-626 37-203 (224)
7 1h2v_C 80 kDa nuclear CAP bind 96.5 0.0021 7.2E-08 76.1 6.3 162 438-605 9-182 (771)
8 1hu3_A EIF4GII; heat repeat, t 91.5 0.28 9.5E-06 50.5 6.7 141 10-160 16-192 (260)
9 2vso_E Eukaryotic initiation f 89.1 1.4 4.8E-05 45.7 9.7 149 11-163 42-227 (284)
10 2i2o_A EIF4G-like protein; pro 82.8 3.6 0.00012 41.4 8.6 110 39-160 36-159 (224)
11 3rk6_A Polyadenylate-binding p 75.8 6.7 0.00023 39.7 8.1 142 12-160 26-186 (234)
12 3u0r_A Apoptosis inhibitor 5; 71.5 29 0.001 39.0 12.3 263 439-714 50-366 (507)
13 1h2v_C 80 kDa nuclear CAP bind 55.0 35 0.0012 40.4 9.7 107 22-137 25-135 (771)
14 3lay_A Zinc resistance-associa 48.3 42 0.0014 32.6 7.4 23 185-207 67-89 (175)
15 4gfq_A Ribosome-recycling fact 47.7 1.1E+02 0.0038 30.5 10.5 69 186-258 129-198 (209)
16 1dd5_A Ribosome recycling fact 46.0 1.3E+02 0.0043 29.5 10.5 88 164-258 86-174 (185)
17 1ise_A Ribosome recycling fact 45.3 1.3E+02 0.0043 29.5 10.3 88 164-258 86-174 (185)
18 1is1_A Ribosome recycling fact 43.1 1.3E+02 0.0043 29.5 10.0 69 186-258 105-174 (185)
19 1wqg_A Ribosome recycling fact 40.4 1.7E+02 0.006 28.5 10.5 88 164-258 86-174 (185)
20 1zl8_A LIN-7; heterodimer, alp 30.2 48 0.0016 26.0 3.6 33 54-87 6-38 (53)
21 2dae_A KIAA0733 protein; mitog 26.4 26 0.00089 29.3 1.6 38 547-589 20-58 (75)
22 3gwk_C SAG1039, putative uncha 25.5 2.9E+02 0.0098 22.9 10.9 74 185-264 7-80 (98)
23 1eh1_A Ribosome recycling fact 24.5 3.9E+02 0.013 26.0 10.0 69 186-258 106-175 (185)
24 3zbh_A ESXA; unknown function, 21.5 3.4E+02 0.011 22.2 8.9 74 185-264 8-81 (99)
25 4ioe_A Secreted protein ESXB; 20.6 2.1E+02 0.0071 23.4 6.3 73 185-263 8-80 (93)
No 1
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=99.88 E-value=7.4e-24 Score=218.21 Aligned_cols=83 Identities=48% Similarity=0.886 Sum_probs=81.1
Q ss_pred CCcHHHHHHHHHHhhcCcccHHHHHHHHHcCCCCChh--HHHHHHhhcccccccCcHHHHHHHHHHHhccccccceeeec
Q 004927 640 RPPLHQYIRKLLFSDLDKSSIEHVLRQLRKLPWSDCE--SYLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVAVVD 717 (723)
Q Consensus 640 r~p~~~fir~Li~~~L~~~~~~~v~k~lrKl~W~d~~--~~l~k~~~~~~~~ky~nI~~lA~ll~~L~~~~~~~~v~vVD 717 (723)
|||||+|||||||.+|++.++++|+++|||+||+|++ .|+++||++||+++|+|||+||+||++|++|||+|+|+|||
T Consensus 1 r~P~~~fir~Li~~~L~~~~~~~vlk~lrKl~W~D~e~~~~l~k~l~~~~~~ky~nI~~lA~ll~~L~~~~~~~~i~vVD 80 (248)
T 1uw4_B 1 RPPLQEYVRKLLYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVD 80 (248)
T ss_dssp CCHHHHHHHHHHHTTCSTTSHHHHHHHHHTSCTTSHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHcccccHHHHHHHHHcCCCCcHHHHHHHHHHhcchhhcccchHHHHHHHHHHHHhhChHHhhhhHH
Confidence 7999999999999999999999999999999999986 89999999999999999999999999999999999999999
Q ss_pred ccccc
Q 004927 718 EVCFC 722 (723)
Q Consensus 718 ~vl~~ 722 (723)
+|+|.
T Consensus 81 ~vlE~ 85 (248)
T 1uw4_B 81 GVLED 85 (248)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99984
No 2
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=99.64 E-value=3e-16 Score=163.08 Aligned_cols=184 Identities=20% Similarity=0.352 Sum_probs=150.9
Q ss_pred chhHHHHHHhCCCCCChhHHHHHHHHHhc--cCChhhHHHHHHHhhccCCCCCCchhHHHHHHHHhccc-chh-------
Q 004927 438 GTNLDALLQRLPGCVSRDLIDQLTVEFCY--LNSKSNRKRLVRALFNVPRTSLELLPYYSRMVATLSTC-MKD------- 507 (723)
Q Consensus 438 ~~~l~~fl~~Lp~~~nre~ID~~aveF~~--lN~Ka~RkrL~k~l~~v~r~r~dlLP~YaR~vAtl~~~-~~D------- 507 (723)
..++..+|++|- .+.+|.++.+++. ++|...-+.+++.+|.-......-.|.||||++.|+.. +|.
T Consensus 12 ~r~v~giLNKLT----~~nf~~i~~ql~~~~i~~~~~l~~vi~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~~~~~~~~ 87 (260)
T 1hu3_A 12 FRKVRSILNKLT----PQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNT 87 (260)
T ss_dssp HHHHHHHHTCSS----CCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC--------
T ss_pred HHHHHHHHhhCC----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhCCcccCCccc
Confidence 347788998887 4679999999984 56655567788888876666667789999999999874 665
Q ss_pred --hHHHHHHHHHHHHHHhhhhcc------c-c--------------cc--------hhccceeEeeeecccccccChhhH
Q 004927 508 --VSSMLIQMLEEEFNFLINKKD------Q-M--------------NI--------ETKIRNIRFIGELCKFKIAPAGLV 556 (723)
Q Consensus 508 --v~~~l~~~L~~~Fr~~~~kk~------~-~--------------~~--------e~k~knirfi~EL~KF~l~p~~~i 556 (723)
+...|++.+..+|........ . + .+ ...+.||||||||.||+|++...+
T Consensus 88 ~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~~l~~~i~ 167 (260)
T 1hu3_A 88 VNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIM 167 (260)
T ss_dssp -CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSCHHHH
T ss_pred hHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCHHHH
Confidence 577889999999987653210 0 0 00 012689999999999999999999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHhhhcccccCCchhhHHHHHHHHHHHHHhhhcCCChHHHHHHHhhchh
Q 004927 557 FSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSIRMANMLEILMRLKNVKNLDPRHVTLVENAYYL 626 (723)
Q Consensus 557 f~~lk~ll~df~~~nIe~~c~llE~cGrfL~r~pet~~rm~~~Le~m~rkk~~~~L~~r~~~~ieNa~y~ 626 (723)
++|++.|+.+++.++||++|.||.+||++|-. +.++.+|..+++.|++.....++++|.+.||++.+-.
T Consensus 168 ~~~l~~Ll~~~~e~~iE~l~~lL~tvG~~L~~-~~~~~~l~~~f~~l~~~~~~~~ls~Rirfmi~~l~dL 236 (260)
T 1hu3_A 168 HDCVVKLLKNHDEESLECLCRLLTTIGKDLDF-EKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDL 236 (260)
T ss_dssp HHHHHHHHHSCSHHHHHHHHHHHHHHHHHHCC-TTTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999876 6778899999999999998899999999999998854
No 3
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=99.47 E-value=9.1e-14 Score=146.18 Aligned_cols=183 Identities=16% Similarity=0.311 Sum_probs=146.7
Q ss_pred hhHHHHHHhCCCCCChhHHHHHHHHHhccC-------ChhhHHHHHHHhhccCCCCCCchhHHHHHHHHhcccch-hh--
Q 004927 439 TNLDALLQRLPGCVSRDLIDQLTVEFCYLN-------SKSNRKRLVRALFNVPRTSLELLPYYSRMVATLSTCMK-DV-- 508 (723)
Q Consensus 439 ~~l~~fl~~Lp~~~nre~ID~~aveF~~lN-------~Ka~RkrL~k~l~~v~r~r~dlLP~YaR~vAtl~~~~~-Dv-- 508 (723)
.++..+|++| |.+.+|.++.+++.++ +...-+.+++.+|.-......-.|.||||.+.|+..+| ++
T Consensus 38 r~vkgiLNKL----T~~nf~~i~~ql~~~~~~~~~~~~~~~l~~vi~~If~kA~~ep~fs~~YA~Lc~~l~~~l~~~i~~ 113 (284)
T 2vso_E 38 RKMKSLLNKL----TLEMFDAISSEILAIANISVWETNGETLKAVIEQIFLKACDEPHWSSMYAQLCGKVVKELNPDITD 113 (284)
T ss_dssp HHHHHHHHSC----CSTTHHHHHHHHHHHHHGGGGCSBCHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSCTTCCB
T ss_pred HHHHHHHhhC----CHHHHHHHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCccccc
Confidence 4688899999 4677999999999543 23344678888887666677788999999999998775 44
Q ss_pred ------------HHHHHHHHHHHHHHhhhhc-----ccccc----------------hhccceeEeeeecccccccChhh
Q 004927 509 ------------SSMLIQMLEEEFNFLINKK-----DQMNI----------------ETKIRNIRFIGELCKFKIAPAGL 555 (723)
Q Consensus 509 ------------~~~l~~~L~~~Fr~~~~kk-----~~~~~----------------e~k~knirfi~EL~KF~l~p~~~ 555 (723)
...|++...++|......+ +.... ..-+.||+|||||.||+|++...
T Consensus 114 e~~~~k~g~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~e~e~~~~e~~~~~~~k~r~lg~i~FIgeLyk~~~l~~~i 193 (284)
T 2vso_E 114 ETNEGKTGPKLVLHYLVARCHAEFDKGWTDKLPTNEDGTPLEPEMMSEEYYAAASAKRRGLGLVRFIGFLYRLNLLTGKM 193 (284)
T ss_dssp CC---CCTHHHHHHHHHHHHHHHHHHCCCSSCC------------CCTTHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred ccccccchhhHHHHHHHHHHHHHHhhhhhhhhhhccccchhhhhhhhhHHHHHHHHHHHHhhHHHHHHHHHhccCCcHHH
Confidence 2458899999998653211 00000 01245899999999999999999
Q ss_pred HHHHHHHHhh----cCCCchHHHHHHHHhhhcccccCCc--------hhhHHHHHHHHHHHHHhhhcCCChHHHHHHHhh
Q 004927 556 VFSCLKACLD----DFTHHNIDVACNLLETCGRFLYRSP--------ETSIRMANMLEILMRLKNVKNLDPRHVTLVENA 623 (723)
Q Consensus 556 if~~lk~ll~----df~~~nIe~~c~llE~cGrfL~r~p--------et~~rm~~~Le~m~rkk~~~~L~~r~~~~ieNa 623 (723)
+++|++.|+. +.+.++||.+|.||.+||..|-..+ +++..|..+++.|+......+++.|-+.||++.
T Consensus 194 ~~~ci~~LL~~~~~~p~e~~iE~l~~lL~tvG~~Ld~~~~~~~~~~~~~~~~md~~f~~l~~l~~~~~ls~RirFml~dl 273 (284)
T 2vso_E 194 MFECFRRLMKDLTDSPSEETLESVVELLNTVGEQFETDSFRTGQATLEGSQLLDSLFGILDNIIQTAKISSRIKFKLIDI 273 (284)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTSCC--------CHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 9999999998 5788999999999999999998775 458999999999999988889999999999987
Q ss_pred ch
Q 004927 624 YY 625 (723)
Q Consensus 624 ~y 625 (723)
+-
T Consensus 274 id 275 (284)
T 2vso_E 274 KE 275 (284)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 4
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=99.46 E-value=3.7e-13 Score=138.75 Aligned_cols=187 Identities=15% Similarity=0.322 Sum_probs=151.4
Q ss_pred HHHHHhCC-CCCChhHHHHHHHHHhcc--CChhhHHHHHHHhhccCCCCCCchhHHHHHHHHhcccchhhHHHHHHHHHH
Q 004927 442 DALLQRLP-GCVSRDLIDQLTVEFCYL--NSKSNRKRLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQMLEE 518 (723)
Q Consensus 442 ~~fl~~Lp-~~~nre~ID~~aveF~~l--N~Ka~RkrL~k~l~~v~r~r~dlLP~YaR~vAtl~~~~~Dv~~~l~~~L~~ 518 (723)
..|+.+|- .--++..+|......--+ +....++-+++.|..+.+.+.+.||..|.++|.|++|-|+++-.+|+.+-+
T Consensus 5 ~~fir~Li~~~L~~~~~~~vlk~lrKl~W~D~e~~~~l~k~l~~~~~~ky~nI~~lA~ll~~L~~~~~~~~i~vVD~vlE 84 (248)
T 1uw4_B 5 QEYVRKLLYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDGVLE 84 (248)
T ss_dssp HHHHHHHHHTTCSTTSHHHHHHHHHTSCTTSHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHcCCCCcHHHHHHHHHHhcchhhcccchHHHHHHHHHHHHhhChHHhhhhHHHHHH
Confidence 34444443 222344566666555533 345677889999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcccccchhccceeEeeeecccccccChhhHHHHHHHHhhcCCCch---------------HHHHHHHHhhhc
Q 004927 519 EFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLDDFTHHN---------------IDVACNLLETCG 583 (723)
Q Consensus 519 ~Fr~~~~kk~~~~~e~k~knirfi~EL~KF~l~p~~~if~~lk~ll~df~~~n---------------Ie~~c~llE~cG 583 (723)
+.|.=+...+...-..|+.+|||||||-+++|+...+||++|-.++. |.|+| |.++|+||+|||
T Consensus 85 ~Ir~gLE~n~~~~nQrRia~vkyLgELYny~lv~s~vIf~~Ly~li~-fg~~~~~~~~~~D~p~d~FRIrLvCtLL~tcg 163 (248)
T 1uw4_B 85 DIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTS-FGVNPDGSPSSLDPPEHLFRIRLVCTILDTCG 163 (248)
T ss_dssp HHHHHHHHCCGGGHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH-TTCCTTSCCCSSSCTTCCHHHHHHHHHHHHHG
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHc-CCCCCCCCCCCCCCCccchhHHHHHHHHHHHH
Confidence 99877776554444678999999999999999999999999999887 64432 999999999999
Q ss_pred ccccCCchhhHHHHHHHHHHHHH----------hhhcCCChHHHHHHHhhchhcCCC
Q 004927 584 RFLYRSPETSIRMANMLEILMRL----------KNVKNLDPRHVTLVENAYYLCKPP 630 (723)
Q Consensus 584 rfL~r~pet~~rm~~~Le~m~rk----------k~~~~L~~r~~~~ieNa~y~~~Pp 630 (723)
.|+-+. ..+.+|..+|-.+++. .+...|+.+-..+++..+-..+|.
T Consensus 164 ~~f~~~-~~~kkLd~fL~ffQ~Y~~~K~~~~~~~k~~plP~~vef~l~D~~~~lrp~ 219 (248)
T 1uw4_B 164 QYFDRG-SSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMISDTLELLRPK 219 (248)
T ss_dssp GGCSSH-HHHHHHHHHHHHHHHHHHHHHTSTTCCSSSCCCHHHHHHHHHHHHHHCTT
T ss_pred HHhcch-hhHHHHHHHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHHhccc
Confidence 987654 4689999999999987 335578999999999999888774
No 5
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=98.88 E-value=1.8e-09 Score=110.66 Aligned_cols=184 Identities=15% Similarity=0.199 Sum_probs=145.2
Q ss_pred hhHHHHHHhCCCCCChhHHHHHHHHHhc-----cCChhhHHHHHHHhhccCCCCCCchhHHHHHHHHhcccc---hh---
Q 004927 439 TNLDALLQRLPGCVSRDLIDQLTVEFCY-----LNSKSNRKRLVRALFNVPRTSLELLPYYSRMVATLSTCM---KD--- 507 (723)
Q Consensus 439 ~~l~~fl~~Lp~~~nre~ID~~aveF~~-----lN~Ka~RkrL~k~l~~v~r~r~dlLP~YaR~vAtl~~~~---~D--- 507 (723)
..+.++|++|-. |.+..|.++.+|.- +++....+.+++.+|+-.-....--+.||||.+.++..+ |.
T Consensus 21 r~v~~iLNkLT~--~p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~lIfekAi~ep~fs~~YA~LC~~l~~~l~~~~~~~~ 98 (234)
T 3rk6_A 21 EYVQDFLNHLTE--QPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGN 98 (234)
T ss_dssp HHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHCCCCCTTCC
T ss_pred HHHHHHHHHccC--ChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCCCCchhH
Confidence 356777777742 24568888877762 567788999999999877677788999999999998755 43
Q ss_pred hHHHHHHHHHHHHHHhh--hhcccccchhccceeEeeeecccc--------cccChhhHHHHHHHHhhc----CCCchHH
Q 004927 508 VSSMLIQMLEEEFNFLI--NKKDQMNIETKIRNIRFIGELCKF--------KIAPAGLVFSCLKACLDD----FTHHNID 573 (723)
Q Consensus 508 v~~~l~~~L~~~Fr~~~--~kk~~~~~e~k~knirfi~EL~KF--------~l~p~~~if~~lk~ll~d----f~~~nIe 573 (723)
+..-|+.....+|...- .+.+...-..-+.||+|||||.|= ++++..++..|++.|+.. -+..+||
T Consensus 99 Fr~lLL~rcQ~eFe~~~~~~~~d~~~k~r~lg~i~FIgELf~~l~~~~~~~~~l~e~I~~~ci~~Ll~~l~~~p~ee~vE 178 (234)
T 3rk6_A 99 FRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLI 178 (234)
T ss_dssp HHHHHHHHHHHHHTTHHHHTSSCHHHHHHHHHHHHHHHHHHHHCCEECTTSSEECCHHHHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHhhhccHHHHHHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHhccCCCChHHHH
Confidence 67889999999996432 221210001225689999999996 799999999999987764 5788999
Q ss_pred HHHHHHhhhcccccCC--chhhHHHHHHHHHHHHHhhhcCCChHHHHHHHhhc
Q 004927 574 VACNLLETCGRFLYRS--PETSIRMANMLEILMRLKNVKNLDPRHVTLVENAY 624 (723)
Q Consensus 574 ~~c~llE~cGrfL~r~--pet~~rm~~~Le~m~rkk~~~~L~~r~~~~ieNa~ 624 (723)
.+|.||.+||++|=.. |..+..|..+++.|........++.|-+.||.+.+
T Consensus 179 ~l~~lL~tvG~~Ld~~~~~~~~~~md~~f~rl~~i~~~~~ls~Rirfml~dli 231 (234)
T 3rk6_A 179 CAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLV 231 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9999999999999874 67788999999999999888999999999998864
No 6
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio}
Probab=98.34 E-value=2e-07 Score=94.89 Aligned_cols=148 Identities=14% Similarity=0.190 Sum_probs=109.0
Q ss_pred HHHHHHhhccCCCCCCchhHHHHHHHHhcccchh------hHHHHHHHHHHHHHHh--hhhcccccchhccceeEeeeec
Q 004927 474 KRLVRALFNVPRTSLELLPYYSRMVATLSTCMKD------VSSMLIQMLEEEFNFL--INKKDQMNIETKIRNIRFIGEL 545 (723)
Q Consensus 474 krL~k~l~~v~r~r~dlLP~YaR~vAtl~~~~~D------v~~~l~~~L~~~Fr~~--~~kk~~~~~e~k~knirfi~EL 545 (723)
+.+++.+|+-.-....--+.||||...|....++ +-..|++...++|..- ++++. -..-+.||+|||||
T Consensus 37 ~~vi~lIfeKAi~ep~fs~~YA~LC~~L~~~~~~~~g~~~Fr~~LLn~cQ~eFe~~ee~~~~~---k~r~lG~i~FIgEL 113 (224)
T 2i2o_A 37 EKVSSVIVDQSLKDQVFSREAGRICYTIVQAEAKQTNGSVFRRNLLNRLQQEFKAREETRKRS---TQEWVCLVSFICNI 113 (224)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTHHHHHHHC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHHccccccchHHHHHHHHHHHHHHHChHHHHHHH---HHHHhHHHHHHHHH
Confidence 4567777765555556678899999887766543 5556777778888531 11111 11125799999999
Q ss_pred ccc----cc--cC-hhhHHHHHHHHhhc---CCCchHHHHHHHHhhhcccccCCchhhHHHHHHHHHHHH-HhhhcCCCh
Q 004927 546 CKF----KI--AP-AGLVFSCLKACLDD---FTHHNIDVACNLLETCGRFLYRSPETSIRMANMLEILMR-LKNVKNLDP 614 (723)
Q Consensus 546 ~KF----~l--~p-~~~if~~lk~ll~d---f~~~nIe~~c~llE~cGrfL~r~pet~~rm~~~Le~m~r-kk~~~~L~~ 614 (723)
.|= ++ .+ ...+++|++.|+.+ -+.++||.+|.||.+||+.|-.... ..|..+++.|+. .....++++
T Consensus 114 f~~l~~~~~~~~~l~~i~~~cl~~Ll~~~~~p~Ee~lEcl~~LL~tvG~~Ld~~~~--~~md~~f~~l~~~l~~~~~ls~ 191 (224)
T 2i2o_A 114 FDYLKVNNMPMVALVHPVYDCLFRLAQSDALKNEEEVDCLVLQLHRIGDQLEKMNV--QLMDELFNLLRDGFLLQEDLSS 191 (224)
T ss_dssp HHHSCBTTBCCGGGHHHHHHHHHHHTSHHHHTSHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHCCCCCH
T ss_pred HhHhcccCcchHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHHhcCcCCCH
Confidence 998 74 34 44688999999985 3457999999999999999987543 889999999988 566678999
Q ss_pred HHHHHHHhhchh
Q 004927 615 RHVTLVENAYYL 626 (723)
Q Consensus 615 r~~~~ieNa~y~ 626 (723)
|-+.||.+.+-.
T Consensus 192 RiRfml~dlieL 203 (224)
T 2i2o_A 192 MGRLLLLEILEF 203 (224)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887743
No 7
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=96.55 E-value=0.0021 Score=76.11 Aligned_cols=162 Identities=13% Similarity=0.197 Sum_probs=119.5
Q ss_pred chhHHHHHHhCCCC---CChhHHHHHHHHHhccCChhhHHHHHHHhhccCCCCCCchhHHHHHHHHhcccchhhHHHHHH
Q 004927 438 GTNLDALLQRLPGC---VSRDLIDQLTVEFCYLNSKSNRKRLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQ 514 (723)
Q Consensus 438 ~~~l~~fl~~Lp~~---~nre~ID~~aveF~~lN~Ka~RkrL~k~l~~v~r~r~dlLP~YaR~vAtl~~~~~Dv~~~l~~ 514 (723)
...+..++.+|-+- .-.+.|..++.... =|--.+|..+++.++......+...|+||=+|+.+|.-.|++|..+++
T Consensus 9 ~~~l~~lI~rlge~~~~s~~~~l~~L~~~l~-~~l~~~r~~i~~~l~~~~~~~P~Kt~vyAaLVgllN~k~pe~G~~lv~ 87 (771)
T 1h2v_C 9 EDHLESLICKVGEKSACSLESNLEGLAGVLE-ADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVE 87 (771)
T ss_dssp -CHHHHHHHTTTSSCSSCHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHhCCCcchHHHHHHHHHHcCChhHHHHHHH
Confidence 45778888888873 33466667665543 133458999999999888888899999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccccchhccceeEeeeecccccccChhhHHHHHHHHhhcCC----Cc-----hHHHHHHHHhhhccc
Q 004927 515 MLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLDDFT----HH-----NIDVACNLLETCGRF 585 (723)
Q Consensus 515 ~L~~~Fr~~~~kk~~~~~e~k~knirfi~EL~KF~l~p~~~if~~lk~ll~df~----~~-----nIe~~c~llE~cGrf 585 (723)
.+-..|+..+++.+..++ .-.+|||+.|+--+|+....+|..|..|++.-+ ++ -+.++...|=-||++
T Consensus 88 ~l~~~f~~~l~~~~~~~~---k~~lrFLa~L~n~~Vv~~~~il~lL~~Ll~~~~e~~~~q~r~D~~v~~vL~~Lp~~G~~ 164 (771)
T 1h2v_C 88 AMIRQLKESLKANNYNEA---VYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKE 164 (771)
T ss_dssp HHHHHHHHHHHTTCHHHH---HHHHHHHHHHHHTTSBCHHHHHHHHHHHHHGGGCSSCCHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHccChHHH---HHHHHHHHHhccCCeecHHHHHHHHHHHHHhhhhcCCcccchhHHHHHHHHHHHHHHHH
Confidence 999999998887544331 125999999999999999999999999998432 11 344455555567777
Q ss_pred ccCCchhhHHHHHHHHHHHH
Q 004927 586 LYRSPETSIRMANMLEILMR 605 (723)
Q Consensus 586 L~r~pet~~rm~~~Le~m~r 605 (723)
|+.. ....+..+|+.+..
T Consensus 165 L~e~--~~~~l~~lle~~~~ 182 (771)
T 1h2v_C 165 LYEK--KDAEMDRIFANTES 182 (771)
T ss_dssp HHHH--HHHHHHHHHHHHHH
T ss_pred HHhc--CHHHHHHHHHHHHH
Confidence 7653 33344555555443
No 8
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=91.45 E-value=0.28 Score=50.48 Aligned_cols=141 Identities=12% Similarity=0.201 Sum_probs=85.0
Q ss_pred hhhhheeecCCCCchhhhhhhhhhhHh--hhHHHHHHHHHHHhhcccccHHHHHHHHHHHhc-ccc---------CchHH
Q 004927 10 QLIMFILVSDDCTKFPFCIKNKSNCIC--KYIANIYIYTYTLLLGLWLTLVYFLKICSLLHQ-RYK---------DFSPC 77 (723)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~--ky~~ei~~~~~e~~~~~~~DI~aaVeI~S~LHQ-Ry~---------~Ft~~ 77 (723)
+-|.-=|+.+|.+.....|..+. +. .-+..++..+++--.--+.=...-..+|..||. .++ .|-..
T Consensus 16 ~giLNKLT~~nf~~i~~ql~~~~--i~~~~~l~~vi~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~~~~~~~~~~Fr~~ 93 (260)
T 1hu3_A 16 RSILNKLTPQMFNQLMKQVSGLT--VDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNTVNFRKL 93 (260)
T ss_dssp HHHHTCSSCCCHHHHHHHHTTCC--CCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC---------CHHHH
T ss_pred HHHHhhCCHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhCCcccCCccchHHHHH
Confidence 34555678889988888887665 21 234555555554332212223446789999997 563 36777
Q ss_pred HHHHHHhhcCCCCCC---------------Cch-------hhhhhhhhhhh--hhhHHHHHHhhhhhcccChhHHHHHHH
Q 004927 78 LIDGLLKVFFPGKSG---------------EDL-------DADRNLKAMKK--RSTLKLLLELYFIGIIEDSSIFINIIK 133 (723)
Q Consensus 78 Ll~~l~~~~~~~~~~---------------~~~-------ekee~~r~~k~--R~~LRll~EL~lvGV~~~~~~l~~~lk 133 (723)
|+..++.-|...... +.. |-++.....|+ ...+||++|||..||++. .+++.+|+
T Consensus 94 LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~~l~~-~i~~~~l~ 172 (260)
T 1hu3_A 94 LLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTE-AIMHDCVV 172 (260)
T ss_dssp HHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSCH-HHHHHHHH
T ss_pred HHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCH-HHHHHHHH
Confidence 776666555211100 000 11111123333 489999999999999975 46678888
Q ss_pred hhhhhccccCcCCcCcchHHHHHHHhh
Q 004927 134 DLTSIEHLKDRDTTQTNLTLLASFARQ 160 (723)
Q Consensus 134 ~l~~~~~~~dk~~~~~~l~ll~sF~K~ 160 (723)
.|+. ++ ...++=.+..|++.
T Consensus 173 ~Ll~-----~~--~e~~iE~l~~lL~t 192 (260)
T 1hu3_A 173 KLLK-----NH--DEESLECLCRLLTT 192 (260)
T ss_dssp HHHH-----SC--SHHHHHHHHHHHHH
T ss_pred HHhC-----CC--CHHHHHHHHHHHHH
Confidence 8864 22 23578889999998
No 9
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=89.09 E-value=1.4 Score=45.75 Aligned_cols=149 Identities=12% Similarity=0.145 Sum_probs=82.3
Q ss_pred hhhheeecCCCCchhhhhhhhhhh-----HhhhHHHHHHHHHHHhhcccccHHHHHHHHHHHhcccc-C-----------
Q 004927 11 LIMFILVSDDCTKFPFCIKNKSNC-----ICKYIANIYIYTYTLLLGLWLTLVYFLKICSLLHQRYK-D----------- 73 (723)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~-----l~ky~~ei~~~~~e~~~~~~~DI~aaVeI~S~LHQRy~-~----------- 73 (723)
-|.-=|+.+|.+.+...|..+... =..-+..++..+++--.--+.=...-..+|..|+..+. +
T Consensus 42 giLNKLT~~nf~~i~~ql~~~~~~~~~~~~~~~l~~vi~~If~kA~~ep~fs~~YA~Lc~~l~~~l~~~i~~e~~~~k~g 121 (284)
T 2vso_E 42 SLLNKLTLEMFDAISSEILAIANISVWETNGETLKAVIEQIFLKACDEPHWSSMYAQLCGKVVKELNPDITDETNEGKTG 121 (284)
T ss_dssp HHHHSCCSTTHHHHHHHHHHHHHGGGGCSBCHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSCTTCCBCC---CCT
T ss_pred HHHhhCCHHHHHHHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCcccccccccccch
Confidence 344457788888888887666510 01223444444444332212223446788998888764 3
Q ss_pred ---chHHHHHHHHhhcCCCCCC------Cc--hh------hhhhhhhhhhh--hhHHHHHHhhhhhcccChhHHHHHHHh
Q 004927 74 ---FSPCLIDGLLKVFFPGKSG------ED--LD------ADRNLKAMKKR--STLKLLLELYFIGIIEDSSIFINIIKD 134 (723)
Q Consensus 74 ---Ft~~Ll~~l~~~~~~~~~~------~~--~e------kee~~r~~k~R--~~LRll~EL~lvGV~~~~~~l~~~lk~ 134 (723)
|-..|+...+.-|.....+ +. .+ .+......|+| ..+||++|||..|+++ ..++..+|+.
T Consensus 122 ~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~e~e~~~~e~~~~~~~k~r~lg~i~FIgeLyk~~~l~-~~i~~~ci~~ 200 (284)
T 2vso_E 122 PKLVLHYLVARCHAEFDKGWTDKLPTNEDGTPLEPEMMSEEYYAAASAKRRGLGLVRFIGFLYRLNLLT-GKMMFECFRR 200 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSCC------------CCTTHHHHHHHHHHHHHHHHHHHHHHHTTSSC-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhccccchhhhhhhhhHHHHHHHHHHHHhhHHHHHHHHHhccCCc-HHHHHHHHHH
Confidence 3344555555545221100 00 00 01122344554 5799999999999997 4566778888
Q ss_pred hhhhccccCcCCcCcchHHHHHHHhh-ccc
Q 004927 135 LTSIEHLKDRDTTQTNLTLLASFARQ-GRI 163 (723)
Q Consensus 135 l~~~~~~~dk~~~~~~l~ll~sF~K~-g~~ 163 (723)
|+.- ..+.. ...++=.+..|++. |..
T Consensus 201 LL~~--~~~~p-~e~~iE~l~~lL~tvG~~ 227 (284)
T 2vso_E 201 LMKD--LTDSP-SEETLESVVELLNTVGEQ 227 (284)
T ss_dssp HHHH--HHSCC-CHHHHHHHHHHHHHHHHH
T ss_pred Hhcc--CCCCC-CHHHHHHHHHHHHHHHHH
Confidence 7641 01111 24578888889988 543
No 10
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio}
Probab=82.75 E-value=3.6 Score=41.40 Aligned_cols=110 Identities=10% Similarity=0.081 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHHhcccc------CchHHHHHHHHhhcCCCCCCCchhhhhhhhhhhh--hhhH
Q 004927 39 IANIYIYTYTLLLGLWLTLVYFLKICSLLHQRYK------DFSPCLIDGLLKVFFPGKSGEDLDADRNLKAMKK--RSTL 110 (723)
Q Consensus 39 ~~ei~~~~~e~~~~~~~DI~aaVeI~S~LHQRy~------~Ft~~Ll~~l~~~~~~~~~~~~~ekee~~r~~k~--R~~L 110 (723)
+.+++..+++-...=+.=....+.+|..|++... -|-..|+...+..|.. +|+....+|+ ...+
T Consensus 36 l~~vi~lIfeKAi~ep~fs~~YA~LC~~L~~~~~~~~g~~~Fr~~LLn~cQ~eFe~--------~ee~~~~~k~r~lG~i 107 (224)
T 2i2o_A 36 LEKVSSVIVDQSLKDQVFSREAGRICYTIVQAEAKQTNGSVFRRNLLNRLQQEFKA--------REETRKRSTQEWVCLV 107 (224)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHT--------HHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHccccccchHHHHHHHHHHHHHHHC--------hHHHHHHHHHHHhHHH
Confidence 4455554444332213334457899999998863 2888888788888741 1334444444 5689
Q ss_pred HHHHHhhhh----hc-ccC-hhHHHHHHHhhhhhccccCcCCcCcchHHHHHHHhh
Q 004927 111 KLLLELYFI----GI-IED-SSIFINIIKDLTSIEHLKDRDTTQTNLTLLASFARQ 160 (723)
Q Consensus 111 Rll~EL~lv----GV-~~~-~~~l~~~lk~l~~~~~~~dk~~~~~~l~ll~sF~K~ 160 (723)
||++|||.. |+ ... ..++..++..|+.... .++ -.++-.+..+++.
T Consensus 108 ~FIgELf~~l~~~~~~~~~l~~i~~~cl~~Ll~~~~--~p~--Ee~lEcl~~LL~t 159 (224)
T 2i2o_A 108 SFICNIFDYLKVNNMPMVALVHPVYDCLFRLAQSDA--LKN--EEEVDCLVLQLHR 159 (224)
T ss_dssp HHHHHHHHHSCBTTBCCGGGHHHHHHHHHHHTSHHH--HTS--HHHHHHHHHHHHH
T ss_pred HHHHHHHhHhcccCcchHHHHHHHHHHHHHHhccCC--CCC--HHHHHHHHHHHHH
Confidence 999999999 86 334 5678899999875321 111 1355556666665
No 11
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=75.80 E-value=6.7 Score=39.69 Aligned_cols=142 Identities=11% Similarity=0.090 Sum_probs=85.8
Q ss_pred hhheee--cCCCCchhhhhhhh---hhhHhhhHHHHHHHHHHHhhcccccHHHHHHHHHHHhcccc------CchHHHHH
Q 004927 12 IMFILV--SDDCTKFPFCIKNK---SNCICKYIANIYIYTYTLLLGLWLTLVYFLKICSLLHQRYK------DFSPCLID 80 (723)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~---~~~l~ky~~ei~~~~~e~~~~~~~DI~aaVeI~S~LHQRy~------~Ft~~Ll~ 80 (723)
|.--|+ .+|.+.....|..+ +..-...+..++..|++--..=+.=......+|..|...+. .|-..|+.
T Consensus 26 iLNkLT~~p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~lIfekAi~ep~fs~~YA~LC~~l~~~l~~~~~~~~Fr~lLL~ 105 (234)
T 3rk6_A 26 FLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQ 105 (234)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHCCCCCTTCCHHHHHHH
T ss_pred HHHHccCChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 344456 77888877765443 22245677778887777554423334568899999988762 37878888
Q ss_pred HHHhhcCCCCCCCchhhhhhhhhhhhhhhHHHHHHhhhh--------hcccChhHHHHHHHhhhhhccccCcCCcCcchH
Q 004927 81 GLLKVFFPGKSGEDLDADRNLKAMKKRSTLKLLLELYFI--------GIIEDSSIFINIIKDLTSIEHLKDRDTTQTNLT 152 (723)
Q Consensus 81 ~l~~~~~~~~~~~~~ekee~~r~~k~R~~LRll~EL~lv--------GV~~~~~~l~~~lk~l~~~~~~~dk~~~~~~l~ 152 (723)
-.+.-|.... +....|+.++ -|....+||++|||.. ++++. .++..++.+|+..- +.+++ --++=
T Consensus 106 rcQ~eFe~~~--~~~~~d~~~k-~r~lg~i~FIgELf~~l~~~~~~~~~l~e-~I~~~ci~~Ll~~l-~~~p~--ee~vE 178 (234)
T 3rk6_A 106 RCRTEYEVKD--QAAKGDEVTR-KRFHAFVLFLGELYLNLEIKGTNGQVTRA-DILQVGLRELLNAL-FSNPM--DDNLI 178 (234)
T ss_dssp HHHHHHTTHH--HHTSSCHHHH-HHHHHHHHHHHHHHHHCCEECTTSSEECC-HHHHHHHHHHHHHH-HHSCC--HHHHH
T ss_pred HHHHHHHhhH--HhhhccHHHH-HHHHHHHHHHHHHHhhhcccccccchhHH-HHHHHHHHHHHHhc-cCCCC--hHHHH
Confidence 7777774211 0001122111 1334679999999997 46543 45556666665421 12232 35788
Q ss_pred HHHHHHhh
Q 004927 153 LLASFARQ 160 (723)
Q Consensus 153 ll~sF~K~ 160 (723)
.++.+++.
T Consensus 179 ~l~~lL~t 186 (234)
T 3rk6_A 179 CAVKLLKL 186 (234)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888887
No 12
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=71.54 E-value=29 Score=38.97 Aligned_cols=263 Identities=13% Similarity=0.204 Sum_probs=152.1
Q ss_pred hhHHHHHHhCCCCCChhHHHHHHHHHhccCChhhHHHHHHHhhccCCCCCCchhHHHHHHHHhcccch-hhHHHHHHHHH
Q 004927 439 TNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKRLVRALFNVPRTSLELLPYYSRMVATLSTCMK-DVSSMLIQMLE 517 (723)
Q Consensus 439 ~~l~~fl~~Lp~~~nre~ID~~aveF~~lN~Ka~RkrL~k~l~~v~r~r~dlLP~YaR~vAtl~~~~~-Dv~~~l~~~L~ 517 (723)
+-+-.|+...|++.+ ++||. -.|.|-=-.-.-|+--+|.|..+++. -+-+|.+-+|.|.+- |=..+ +.++.
T Consensus 50 Q~I~kffk~FP~l~~-~Ai~a-~lDLcEDed~~IR~qaik~Lp~~ck~-----~~i~kiaDvL~QlLqtdd~~E-~~~V~ 121 (507)
T 3u0r_A 50 QFIPKFFKHFPELAD-SAINA-QLDLCEDEDVSIRRQAIKELPQFATG-----ENLPRVADILTQLLQTDDSAE-FNLVN 121 (507)
T ss_dssp HHHHHHGGGCGGGHH-HHHHH-HHHHHTCSSHHHHHHHHHHGGGGCCT-----TCHHHHHHHHHHHTTCCCHHH-HHHHH
T ss_pred HHHHHHHhhChhhHH-HHHHH-HHHHHhcccHHHHHHHHHhhHHHhhh-----hhhhhHHHHHHHHHhccchHH-HHHHH
Confidence 356789999999988 44775 46888655566799999999999997 447899999999884 33222 23344
Q ss_pred HHHHHhhhhccc---------c---cchhccceeEeeeecccc---cccC---hhhHHHHHHHHhhcCCCchHHHHHHHH
Q 004927 518 EEFNFLINKKDQ---------M---NIETKIRNIRFIGELCKF---KIAP---AGLVFSCLKACLDDFTHHNIDVACNLL 579 (723)
Q Consensus 518 ~~Fr~~~~kk~~---------~---~~e~k~knirfi~EL~KF---~l~p---~~~if~~lk~ll~df~~~nIe~~c~ll 579 (723)
+-+.++++.-.+ + .-..|-|++.||++=++= .++. ...|.+.+|.+|.|.++-..+++-.||
T Consensus 122 ~sL~sllk~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL 201 (507)
T 3u0r_A 122 NALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKIL 201 (507)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 444444332100 0 113467888888652211 1111 234778888888999999999998888
Q ss_pred hhhcccccCCchhhHHHHHHHHHHHHHh-hhcCCChHHHHHHHhhchhcCCCccccccccCCCcHHHHHHHHHHhhcCcc
Q 004927 580 ETCGRFLYRSPETSIRMANMLEILMRLK-NVKNLDPRHVTLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDLDKS 658 (723)
Q Consensus 580 E~cGrfL~r~pet~~rm~~~Le~m~rkk-~~~~L~~r~~~~ieNa~y~~~Pp~~~~~~~k~r~p~~~fir~Li~~~L~~~ 658 (723)
=.+. ++.++.-++ .|++++...- -...+++.....|+-.++.+.---.-.......+..-.|+-.-|+-.++..
T Consensus 202 ~~lk--l~~t~~g~q---eLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L 276 (507)
T 3u0r_A 202 SGLK--SLQTVSGRQ---QLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTL 276 (507)
T ss_dssp HTSG--GGSSHHHHH---HHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCC
T ss_pred Hhcc--cccCchHHH---HHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhc
Confidence 4443 445554444 5555555432 123344333333333332211100001111234456666666666777764
Q ss_pred cHH-----HHHHHHHcC----CC----CChh---HHHHHHhh-----cc-------------cccccCcHHHHHHHHHHH
Q 004927 659 SIE-----HVLRQLRKL----PW----SDCE---SYLLKCFM-----KV-------------HKGKYGQIHLIASLTAGL 704 (723)
Q Consensus 659 ~~~-----~v~k~lrKl----~W----~d~~---~~l~k~~~-----~~-------------~~~ky~nI~~lA~ll~~L 704 (723)
+.. .=+++|+-+ |. ++.. ..++.+|. .| -..+|+.+.||=-.+..|
T Consensus 277 ~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L 356 (507)
T 3u0r_A 277 TTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQL 356 (507)
T ss_dssp CCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSCCCC--------------CCCHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCCCCcccccccccccccCcccchhHHHHHHHHHHHH
Confidence 332 333444332 22 2222 23444444 12 245788889999999999
Q ss_pred hcccccccee
Q 004927 705 SRYHDEFAVA 714 (723)
Q Consensus 705 ~~~~~~~~v~ 714 (723)
++.+|+|...
T Consensus 357 ~~k~P~~l~e 366 (507)
T 3u0r_A 357 GRKLPDFLTA 366 (507)
T ss_dssp HTTCTHHHHC
T ss_pred hhhChhhhcc
Confidence 9999998743
No 13
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=55.03 E-value=35 Score=40.35 Aligned_cols=107 Identities=13% Similarity=0.203 Sum_probs=77.0
Q ss_pred CchhhhhhhhhhhHhhhHHHHHHHHHHHhhcc----cccHHHHHHHHHHHhccccCchHHHHHHHHhhcCCCCCCCchhh
Q 004927 22 TKFPFCIKNKSNCICKYIANIYIYTYTLLLGL----WLTLVYFLKICSLLHQRYKDFSPCLIDGLLKVFFPGKSGEDLDA 97 (723)
Q Consensus 22 ~~~~~~~~~~~~~l~ky~~ei~~~~~e~~~~~----~~DI~aaVeI~S~LHQRy~~Ft~~Ll~~l~~~~~~~~~~~~~ek 97 (723)
.++-..|..|++.|...+..--+.+.+.+.+| +.=++.-..++..++-+..+|...+++.+...|.-. .
T Consensus 25 ~s~~~~l~~L~~~l~~~l~~~r~~i~~~l~~~~~~~P~Kt~vyAaLVgllN~k~pe~G~~lv~~l~~~f~~~-----l-- 97 (771)
T 1h2v_C 25 CSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKES-----L-- 97 (771)
T ss_dssp SCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----H--
T ss_pred ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH-----H--
Confidence 44556688888777777777777777777775 455777788899999999999988888777666210 0
Q ss_pred hhhhhhhhhhhhHHHHHHhhhhhcccChhHHHHHHHhhhh
Q 004927 98 DRNLKAMKKRSTLKLLLELYFIGIIEDSSIFINIIKDLTS 137 (723)
Q Consensus 98 ee~~r~~k~R~~LRll~EL~lvGV~~~~~~l~~~lk~l~~ 137 (723)
+.-+-.+-|..|||++.|+-+||++..++ +.++..|+.
T Consensus 98 -~~~~~~~~k~~lrFLa~L~n~~Vv~~~~i-l~lL~~Ll~ 135 (771)
T 1h2v_C 98 -KANNYNEAVYLVRFLSDLVNCHVIAAPSM-VAMFENFVS 135 (771)
T ss_dssp -HTTCHHHHHHHHHHHHHHHHTTSBCHHHH-HHHHHHHHH
T ss_pred -HccChHHHHHHHHHHHHhccCCeecHHHH-HHHHHHHHH
Confidence 11233466899999999999999987654 456666654
No 14
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=48.29 E-value=42 Score=32.63 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 004927 185 NITADQKKIFKKAFHTYYNAVQE 207 (723)
Q Consensus 185 ~i~~e~q~~~r~ll~~Y~~al~~ 207 (723)
.+|+|+|+.++.|++.|+.....
T Consensus 67 nLT~EQq~ql~~I~~e~r~~~~~ 89 (175)
T 3lay_A 67 PLTTEQQATAQKIYDDYYTQTSA 89 (175)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999987654
No 15
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=47.73 E-value=1.1e+02 Score=30.51 Aligned_cols=69 Identities=17% Similarity=0.326 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHHH-HHHHHHHHHHHHHHHH
Q 004927 186 ITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENSSSYE-KLRKSYDHLYRNVSSL 258 (723)
Q Consensus 186 i~~e~q~~~r~ll~~Y~~al~~~l~~~hk~L~~~ek~n~~~~~~~Gel~eE~~~~ye-~l~k~yEkL~~~~~sL 258 (723)
++.|.|+.+....+.|.+...-.+..-.+.-.+. -+-+...|+++||....++ ++++.-++...-+..+
T Consensus 129 LTeErRkelvK~ak~~~E~aKvaIRniRrda~~~----lKk~~K~~~isEDe~k~~e~eiQklTd~~i~~iD~~ 198 (209)
T 4gfq_A 129 LTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDD----LKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEI 198 (209)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999987654443322111111 1234457999998776653 5666666666665544
No 16
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=45.98 E-value=1.3e+02 Score=29.51 Aligned_cols=88 Identities=15% Similarity=0.186 Sum_probs=51.8
Q ss_pred cccCCCCCCChhhhHhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHH-H
Q 004927 164 FLGLPLSGPGQEIYEEFFKGLNITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENSSSY-E 242 (723)
Q Consensus 164 ~lG~~~~~~~~~~~~~~~~~~~i~~e~q~~~r~ll~~Y~~al~~~l~~~hk~L~~~ek~n~~~~~~~Gel~eE~~~~y-e 242 (723)
-+|+.|...|....-. ++ .++.|.|+.+....+.|.+...-.+..-.+...+.-+ -+...|+++||....+ +
T Consensus 86 dLglnP~~dG~~Iri~-iP--~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lK----k~~K~~~iseD~~k~~e~ 158 (185)
T 1dd5_A 86 DLGLNPINDGNVIRLV-FP--SPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIK----EDQKEGLIPEDDAKRLEN 158 (185)
T ss_dssp SSCCCCEECSSCEEEE-CC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTSSCHHHHHHHHH
T ss_pred CCCCCcccCCCEEEEe-CC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhcCCCChhHHHHHHH
Confidence 4688875322211111 11 2789999999999999998776555433222221111 1345799998765544 4
Q ss_pred HHHHHHHHHHHHHHHH
Q 004927 243 KLRKSYDHLYRNVSSL 258 (723)
Q Consensus 243 ~l~k~yEkL~~~~~sL 258 (723)
++++.-++...-+..+
T Consensus 159 ~iQkltd~~i~~id~~ 174 (185)
T 1dd5_A 159 EIQKLTDEFIEKLDEV 174 (185)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666667666666544
No 17
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=45.27 E-value=1.3e+02 Score=29.50 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=51.7
Q ss_pred cccCCCCCCChhhhHhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHH-H
Q 004927 164 FLGLPLSGPGQEIYEEFFKGLNITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENSSSY-E 242 (723)
Q Consensus 164 ~lG~~~~~~~~~~~~~~~~~~~i~~e~q~~~r~ll~~Y~~al~~~l~~~hk~L~~~ek~n~~~~~~~Gel~eE~~~~y-e 242 (723)
-+|+.|...|....-. ++ .++.|.|+.+....+.|.+...-.+..-.+...+.-+ -+...|+++||....+ +
T Consensus 86 dLglnP~~dG~~Iri~-iP--~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lK----k~~K~~~iseD~~k~~e~ 158 (185)
T 1ise_A 86 DLGLNPNSAGSDIRVP-LP--PLTEERRKDLTKIVRGEAEQARVAVRNVGRDANDKVK----ALLKDKEISEDDDRRSQD 158 (185)
T ss_dssp CTTCCCEESSSEEEEE-CC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHSSSCHHHHHHHHH
T ss_pred CCCCCcccCCCEEEEe-CC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhcCCCChhHHHHHHH
Confidence 4688875322211111 11 2789999999999999998776554432222221111 1345799998765544 4
Q ss_pred HHHHHHHHHHHHHHHH
Q 004927 243 KLRKSYDHLYRNVSSL 258 (723)
Q Consensus 243 ~l~k~yEkL~~~~~sL 258 (723)
++++.-+++..-+..+
T Consensus 159 ~iQkltd~~i~~id~~ 174 (185)
T 1ise_A 159 DVQKLTDAAIKKIEAA 174 (185)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666667666666544
No 18
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=43.10 E-value=1.3e+02 Score=29.49 Aligned_cols=69 Identities=14% Similarity=0.159 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHH-HHHHHHHHHHHHHHHHH
Q 004927 186 ITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENSSSY-EKLRKSYDHLYRNVSSL 258 (723)
Q Consensus 186 i~~e~q~~~r~ll~~Y~~al~~~l~~~hk~L~~~ek~n~~~~~~~Gel~eE~~~~y-e~l~k~yEkL~~~~~sL 258 (723)
++.|.|+.+....+.|.+...-.+..-.+...+.-+ -+...|+++||....+ +++++.-+++..-+..+
T Consensus 105 lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lK----k~~K~~~iseD~~k~~e~~iQkltd~~i~~id~~ 174 (185)
T 1is1_A 105 LTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLK----ALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEV 174 (185)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999998776554433222221111 2446899998765443 45666666666665544
No 19
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=40.41 E-value=1.7e+02 Score=28.47 Aligned_cols=88 Identities=14% Similarity=0.169 Sum_probs=51.5
Q ss_pred cccCCCCCCChhhhHhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHH-H
Q 004927 164 FLGLPLSGPGQEIYEEFFKGLNITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENSSSY-E 242 (723)
Q Consensus 164 ~lG~~~~~~~~~~~~~~~~~~~i~~e~q~~~r~ll~~Y~~al~~~l~~~hk~L~~~ek~n~~~~~~~Gel~eE~~~~y-e 242 (723)
-+|+.|...|....-. ++ .++.|.|+.+....+.|.+...-.+..-.+...+.-+ -+...|+++||....+ +
T Consensus 86 dLglnP~~dG~~Iri~-iP--~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lK----k~~K~~~iseD~~k~~e~ 158 (185)
T 1wqg_A 86 DLGVNPTNDGALIRVA-VP--QLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELH----RIRKEGEAGEDEVGRAEK 158 (185)
T ss_dssp TTCCCCEECSSCEEEE-CC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTTSSCHHHHHHHHH
T ss_pred CCCCCcccCCCEEEEe-CC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhcCCCChhHHHHHHH
Confidence 3688875322211111 11 2789999999999999998776555433222222111 2345799998765443 4
Q ss_pred HHHHHHHHHHHHHHHH
Q 004927 243 KLRKSYDHLYRNVSSL 258 (723)
Q Consensus 243 ~l~k~yEkL~~~~~sL 258 (723)
++++.-+++..-+..+
T Consensus 159 ~iQkltd~~i~~id~~ 174 (185)
T 1wqg_A 159 DLDKTTHQYVTQIDEL 174 (185)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666666666544
No 20
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=30.18 E-value=48 Score=25.97 Aligned_cols=33 Identities=12% Similarity=0.137 Sum_probs=30.6
Q ss_pred cccHHHHHHHHHHHhccccCchHHHHHHHHhhcC
Q 004927 54 WLTLVYFLKICSLLHQRYKDFSPCLIDGLLKVFF 87 (723)
Q Consensus 54 ~~DI~aaVeI~S~LHQRy~~Ft~~Ll~~l~~~~~ 87 (723)
..||.-|+|++-.| ||=+++.++=++++++.+.
T Consensus 6 ~RDv~RaiELle~l-q~sgevp~~KL~aLq~VLq 38 (53)
T 1zl8_A 6 ERDVQRILELMEHV-QKTGEVNNAKLASLQQVLQ 38 (53)
T ss_dssp HHHHHHHHHHHHHH-GGGSSSTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHH
Confidence 57999999999999 8989999999999999984
No 21
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.44 E-value=26 Score=29.33 Aligned_cols=38 Identities=32% Similarity=0.677 Sum_probs=31.9
Q ss_pred cccccChhhHHHHHHHHhhcCCCchHHHHHHHHh-hhcccccCC
Q 004927 547 KFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLE-TCGRFLYRS 589 (723)
Q Consensus 547 KF~l~p~~~if~~lk~ll~df~~~nIe~~c~llE-~cGrfL~r~ 589 (723)
+|-=||.++|=.|+.. +.||.|.+|.+|. -.+||||-.
T Consensus 20 rFPEvPd~VVsqc~~q-----N~~Nl~aC~~~L~qES~kYLY~e 58 (75)
T 2dae_A 20 KFPEVPEVVVSRCMLQ-----NNNNLDACCAVLSQESTRYLYGE 58 (75)
T ss_dssp HSSSSCHHHHHHHHTT-----TTSCSHHHHHHHHHHHHHHTTTC
T ss_pred hcccCcHHHHHHHHHH-----hccCHHHHHHHHHHhcccceecc
Confidence 6888999999998864 6899999999886 478999865
No 22
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=25.47 E-value=2.9e+02 Score=22.87 Aligned_cols=74 Identities=11% Similarity=0.171 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 004927 185 NITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENSSSYEKLRKSYDHLYRNVSSLAEALDM 264 (723)
Q Consensus 185 ~i~~e~q~~~r~ll~~Y~~al~~~l~~~hk~L~~~ek~n~~~~~~~Gel~eE~~~~ye~l~k~yEkL~~~~~sLAe~L~~ 264 (723)
.|+|+.-...-.-|...-+.+-..+..++..+..+.- .=+|.-++...+.|++..+.++++......++..|..
T Consensus 7 ~V~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~------~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~ 80 (98)
T 3gwk_C 7 KLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDE------NWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLK 80 (98)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778877777777777777777777777766666642 2489999999999999999999999999999988753
No 23
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=24.47 E-value=3.9e+02 Score=25.96 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHH-HHHHHHHHHHHHHHHHHH
Q 004927 186 ITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENSSS-YEKLRKSYDHLYRNVSSL 258 (723)
Q Consensus 186 i~~e~q~~~r~ll~~Y~~al~~~l~~~hk~L~~~ek~n~~~~~~~Gel~eE~~~~-ye~l~k~yEkL~~~~~sL 258 (723)
++.|.|+.+....+.|.+...-.+..-.+...+.-+ -+...|+++||.... -+++++.-+++..-+..+
T Consensus 106 lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lK----k~~K~~~iseD~~k~~e~~iQkltd~~i~~id~~ 175 (185)
T 1eh1_A 106 LTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLK----KLAKELHLSEDETKRAEAEIQKITDEFIAKADQL 175 (185)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999998776554433222221111 134578899876443 355666666666666544
No 24
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=21.50 E-value=3.4e+02 Score=22.21 Aligned_cols=74 Identities=18% Similarity=0.293 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 004927 185 NITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENSSSYEKLRKSYDHLYRNVSSLAEALDM 264 (723)
Q Consensus 185 ~i~~e~q~~~r~ll~~Y~~al~~~l~~~hk~L~~~ek~n~~~~~~~Gel~eE~~~~ye~l~k~yEkL~~~~~sLAe~L~~ 264 (723)
.|+|+.-...-.-|...-+.+-..+...+..+..+.- . =+|.-.+...+.|++..+.+.++......+++.|..
T Consensus 8 ~v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~----~--W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~ 81 (99)
T 3zbh_A 8 RLTPEELRGVARQYNVESSNVTELIARLDQMSHTLQG----I--WEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHN 81 (99)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H--CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----h--ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778877777777777777777777777666666641 2 378889999999999999999999999999988753
No 25
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=20.57 E-value=2.1e+02 Score=23.44 Aligned_cols=73 Identities=10% Similarity=0.181 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 004927 185 NITADQKKIFKKAFHTYYNAVQELLQAEHTSLRQMENENAKILNAKGELSEENSSSYEKLRKSYDHLYRNVSSLAEALD 263 (723)
Q Consensus 185 ~i~~e~q~~~r~ll~~Y~~al~~~l~~~hk~L~~~ek~n~~~~~~~Gel~eE~~~~ye~l~k~yEkL~~~~~sLAe~L~ 263 (723)
.|+|+.-...-.-|...-..+-..+..+...+..+.- .=.|.-.+...+.|++..+.+.++...+..++..|.
T Consensus 8 ~v~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~------~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~ 80 (93)
T 4ioe_A 8 KITPEELERIAGNFKNAAGEAQSQINRLEGDINSLEG------QWAGATQAKFRGEFIQSKQAMQQYIPILEGISTDLK 80 (93)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778777777777777777777666666666666531 135777788888899999999999999999888775
Done!