BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004928
         (723 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O82804|ELF3_ARATH Protein EARLY FLOWERING 3 OS=Arabidopsis thaliana GN=ELF3 PE=1 SV=1
          Length = 695

 Score =  416 bits (1068), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 319/753 (42%), Positives = 404/753 (53%), Gaps = 92/753 (12%)

Query: 1   MKRGKDDEKIMGPMFPRLHVNDTEKGGPRAPPRNKMALYEQLSIPTQRFST-GVLPLNPS 59
           MKRGKD+EKI+ PMFPRLHVND +KGGPRAPPRNKMALYEQLSIP+QRF   G +    +
Sbjct: 1   MKRGKDEEKILEPMFPRLHVNDADKGGPRAPPRNKMALYEQLSIPSQRFGDHGTMNSRSN 60

Query: 60  NSSSLVPPVSSSQGNGLERNLLFAHSVHPSTPTHLDEKCHSDQPAGATLNTHLQHHEQSK 119
           N+S+LV P  SSQ  G+ERNL   H +  S      EK  S       + +  QH +Q K
Sbjct: 61  NTSTLVHPGPSSQPCGVERNLSVQH-LDSSAANQATEKFVSQMSFMENVRSSAQH-DQRK 118

Query: 120 KVSEEDDFAVPIFDQAGMGQCHGKSQSDVDKGNLSPFNPSNTRKSTKFQNACDKNPKRSS 179
            V EE+DFAVP++  +   Q HG+++S ++K   +P    ++  S +FQ       +  S
Sbjct: 119 MVREEEDFAVPVYINSRRSQSHGRTKSGIEKEKHTPMVAPSSHHSIRFQEVN----QTGS 174

Query: 180 SSSISLRQQGGHVCQENPKICISIGNFPAKSSVNLSIREKIDGIVKEVSASPNQEYREIS 239
             ++ L        ++  K     G F    S+++S+ E+ID               E S
Sbjct: 175 KQNVCLATCSKPEVRDQVKANARSGGFVI--SLDVSVTEEID--------------LEKS 218

Query: 240 GSDFSRINDSDASLRLESGAGLPPNGC-CRYDDVDSTGDFQKEVVLQPRGDTHSTEDCGH 298
            S   R+ND +ASLR ES   L  +G   R  D D+  +           + HS E  G 
Sbjct: 219 ASSHDRVNDYNASLRQESRNRLYRDGGKTRLKDTDNGAESHLAT------ENHSQEGHGS 272

Query: 299 RSGLHNDSRYHVDKTCGSLQLGSGDKSDDVSETSMVDSMSGVDMSPDDVVGIIGHKHFWK 358
              + ND  Y   + C SLQ  + + SDDVS+ SMVDS+S +D+SPDDVVGI+G K FW+
Sbjct: 273 PEDIDNDREYSKSRACASLQQINEEASDDVSDDSMVDSISSIDVSPDDVVGILGQKRFWR 332

Query: 359 ARRAIVNQQRVFAVQVFELHRLIKVQQLIAESPDVLLEESACLGKPSLKASPAKK-LPLE 417
           AR+AI NQQRVFAVQ+FELHRLIKVQ+LIA SPD+LL+E + LGK S K+ P KK LP E
Sbjct: 333 ARKAIANQQRVFAVQLFELHRLIKVQKLIAASPDLLLDEISFLGKVSAKSYPVKKLLPSE 392

Query: 418 YVVK-PLPH-SVKRKVDSEKPN-HKIESSAENAVGKTSLSSVKNGSQPSNYGPYCANQPP 474
           ++VK PLPH  VK++ DSEK + HK+ESSAEN VG+    S +   Q SNY P+ AN PP
Sbjct: 393 FLVKPPLPHVVVKQRGDSEKTDQHKMESSAENVVGRL---SNQGHHQQSNYMPF-ANNPP 448

Query: 475 PMEATNSRMAHWCFHQSP-----GQQWLIPVMSPSEGLIYKPYPGPGFMGTVCGGGCSPF 529
              A N     +CF   P      QQWLIPVMSPSEGLIYKP+PG    G   G      
Sbjct: 449 ASPAPNG----YCFPPQPPPSGNHQQWLIPVMSPSEGLIYKPHPGMAHTGHYGGYYGHYM 504

Query: 530 GPAPLTGNFMHPDYGITSPIPLQGNGVMPGAHLVGHGYFPPYGM--PVMNPSVSGSAA-- 585
            P P+     HP  G   P               G+GYFPPYGM   +MNP  S      
Sbjct: 505 -PTPMVMPQYHPGMGFPPP---------------GNGYFPPYGMMPTIMNPYCSSQQQQQ 548

Query: 586 ----EQKNQFAVPGSRDQFSQGDANFYMPQESSCNVPAQKNGAVPPVRQFQASKDTELQG 641
               EQ NQF  PG+         N    Q+ S N PA +    P     +A K    QG
Sbjct: 549 QQPNEQMNQFGHPGNLQ-------NTQQQQQRSDNEPAPQQQQQPTKSYPRARKSR--QG 599

Query: 642 STASSPG--ERVRGDGMGHAAEGTDALQVSTVSP----------VVQEAAPQPHDADQPT 689
           ST SSP   + + G          D       +P                    D    T
Sbjct: 600 STGSSPSGPQGISGSKSFRPFAAVDEDSNINNAPEQTMTTTTTTTRTTVTQTTRDGGGVT 659

Query: 690 KVIKVVPHNPRSATESVARIFQSIQEERKQYDS 722
           +VIKVVPHN + A+E+ ARIFQSIQEERK+YDS
Sbjct: 660 RVIKVVPHNAKLASENAARIFQSIQEERKRYDS 692


>sp|B8FKD8|SYGB_DESAA Glycine--tRNA ligase beta subunit OS=Desulfatibacillum alkenivorans
           (strain AK-01) GN=glyS PE=3 SV=1
          Length = 690

 Score = 37.7 bits (86), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 532 APLTGNFMHPDYGITS-----PIPLQGNGVMPGAHLVGHGYFPPYGMPVMNPSVSGSAAE 586
           A L G F  P + I +      IP + NGV  G    GH +  P  + +  PS   +A E
Sbjct: 149 AALPGTFARPVFSILALLGDQVIPFEWNGVTTGRQTRGHYFMAPEAIDIQTPSEYVNALE 208

Query: 587 QKNQFA-VPGSRDQFSQG 603
           +    A +P  R    +G
Sbjct: 209 KAKVIADIPTRRKMVKEG 226


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.130    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 301,823,466
Number of Sequences: 539616
Number of extensions: 14394783
Number of successful extensions: 25334
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 25265
Number of HSP's gapped (non-prelim): 112
length of query: 723
length of database: 191,569,459
effective HSP length: 125
effective length of query: 598
effective length of database: 124,117,459
effective search space: 74222240482
effective search space used: 74222240482
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)