Query 004928
Match_columns 723
No_of_seqs 44 out of 46
Neff 3.3
Searched_HMMs 46136
Date Thu Mar 28 15:12:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004928.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004928hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06495 Transformer: Fruit fl 80.6 1.8 3.9E-05 43.9 3.8 10 565-574 156-165 (182)
2 KOG1103 Predicted coiled-coil 38.4 37 0.0008 38.3 4.1 23 23-52 395-418 (561)
3 PF07777 MFMR: G-box binding p 36.3 96 0.0021 32.2 6.4 65 510-575 36-108 (189)
4 KOG1924 RhoA GTPase effector D 32.5 2.1E+02 0.0046 35.7 9.1 9 365-373 354-362 (1102)
5 PF10851 DUF2652: Protein of u 27.0 48 0.001 32.1 2.3 18 365-382 91-108 (116)
6 KOG1924 RhoA GTPase effector D 20.3 6.4E+02 0.014 31.9 10.1 10 695-704 694-703 (1102)
7 PF11814 DUF3335: Peptidase_C3 20.2 28 0.00061 36.4 -0.6 18 516-534 45-62 (207)
8 KOG4489 Uncharacterized conser 19.0 32 0.00069 31.3 -0.4 13 495-512 5-17 (87)
9 KOG4264 Nucleo-cytoplasmic pro 17.2 2.5E+02 0.0055 33.5 5.9 57 516-574 539-595 (694)
10 KOG2375 Protein interacting wi 15.8 6.1E+02 0.013 31.5 8.7 23 527-549 574-596 (756)
No 1
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=80.63 E-value=1.8 Score=43.93 Aligned_cols=10 Identities=50% Similarity=1.069 Sum_probs=7.9
Q ss_pred CCCCCCCCCC
Q 004928 565 HGYFPPYGMP 574 (723)
Q Consensus 565 ~~YfPP~gmp 574 (723)
..||+||+.|
T Consensus 156 ~p~~apy~~~ 165 (182)
T PF06495_consen 156 PPYFAPYPRP 165 (182)
T ss_pred CcccCccCCC
Confidence 3499999976
No 2
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=38.39 E-value=37 Score=38.35 Aligned_cols=23 Identities=48% Similarity=0.784 Sum_probs=15.9
Q ss_pred CCCCC-CCCCCCcchhhhhhcCcCCCCCCCC
Q 004928 23 TEKGG-PRAPPRNKMALYEQLSIPTQRFSTG 52 (723)
Q Consensus 23 aeKGG-PRAPPRNKMALYEQfSIPSqRF~~~ 52 (723)
+|||| |||++-- ...||-+.+.|
T Consensus 395 ~E~ggcP~~ie~~-------VpmPsPl~S~G 418 (561)
T KOG1103|consen 395 TEKGGCPRAIEPA-------VPMPSPLMSIG 418 (561)
T ss_pred cccCCCCCCCCCC-------CCCCCcccccc
Confidence 57888 8887642 45677777666
No 3
>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=36.30 E-value=96 Score=32.20 Aligned_cols=65 Identities=31% Similarity=0.495 Sum_probs=37.2
Q ss_pred cCCCCCCCCccccCC--CCCCCCCCCCCC--CCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004928 510 KPYPGPGFMGTVCGG--GCSPFGPAPLTG--NFMHPDYGITSPI----PLQGNGVMPGAHLVGHGYFPPYGMPV 575 (723)
Q Consensus 510 KPypGPgf~~p~yg~--~cgP~~~~p~~g--~fmn~~Ygvp~~~----~h~g~~~~pg~P~~~~~YfPP~gmpv 575 (723)
.=|.||+.+-++|-- --+|--.+-|-| ..|.++||.|++- +|-|+--.|.+|++.+.| -||.|+.
T Consensus 36 QAYyg~~~~p~~f~s~va~sp~phPYMWG~~q~mmPPYGtP~pY~A~YphGgvYAHP~mp~~s~p~-~~~~~~s 108 (189)
T PF07777_consen 36 QAYYGPGAPPPYFNSAVASSPQPHPYMWGPQQPMMPPYGTPVPYPAMYPHGGVYAHPSMPPGSHPF-SPYAMPS 108 (189)
T ss_pred hhccCCCCCCcccCcccCCCCCCCCcccCCCccccCCCCCCCCCccccCCCccccCCCCCcccccC-CCccccc
Confidence 457777622222210 125555666667 8899999999442 354555567777755543 3455554
No 4
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=32.48 E-value=2.1e+02 Score=35.73 Aligned_cols=9 Identities=33% Similarity=0.409 Sum_probs=5.9
Q ss_pred hhhhhhhhh
Q 004928 365 NQQRVFAVQ 373 (723)
Q Consensus 365 ~QQrvFa~Q 373 (723)
-|++||-.+
T Consensus 354 vqlkvfdE~ 362 (1102)
T KOG1924|consen 354 VQLKVFDEH 362 (1102)
T ss_pred HHHHHHhhh
Confidence 467777654
No 5
>PF10851 DUF2652: Protein of unknown function (DUF2652) ; InterPro: IPR020503 This entry contains proteins with no known function.
Probab=27.03 E-value=48 Score=32.08 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=14.6
Q ss_pred hhhhhhhhhHHhhHHHHH
Q 004928 365 NQQRVFAVQVFELHRLIK 382 (723)
Q Consensus 365 ~QQrvFa~QVFELHRLik 382 (723)
+=++++.+.|.+.|||+|
T Consensus 91 ~~~kL~G~dVI~aHrlLK 108 (116)
T PF10851_consen 91 RFCKLAGKDVIEAHRLLK 108 (116)
T ss_pred ccchhcCchhhHhHHHHc
Confidence 335678999999999986
No 6
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=20.26 E-value=6.4e+02 Score=31.87 Aligned_cols=10 Identities=10% Similarity=0.122 Sum_probs=6.0
Q ss_pred ecCCCCchhh
Q 004928 695 VPHNPRSATE 704 (723)
Q Consensus 695 VPHN~rsASE 704 (723)
+=|+.++|--
T Consensus 694 ~ilDsKtaQn 703 (1102)
T KOG1924|consen 694 RILDSKTAQN 703 (1102)
T ss_pred eecchHHHHH
Confidence 4467777643
No 7
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=20.21 E-value=28 Score=36.35 Aligned_cols=18 Identities=50% Similarity=0.842 Sum_probs=14.9
Q ss_pred CCCccccCCCCCCCCCCCC
Q 004928 516 GFMGTVCGGGCSPFGPAPL 534 (723)
Q Consensus 516 gf~~p~yg~~cgP~~~~p~ 534 (723)
-||....| ||+|+|++--
T Consensus 45 ifmtsGhG-GC~P~GLAlA 62 (207)
T PF11814_consen 45 IFMTSGHG-GCGPFGLALA 62 (207)
T ss_pred ecccCCCC-CcChHHHHHH
Confidence 58888899 9999998543
No 8
>KOG4489 consensus Uncharacterized conserved protein BC10 (implicated in bladder cancer in humans) [Function unknown]
Probab=18.98 E-value=32 Score=31.31 Aligned_cols=13 Identities=69% Similarity=1.344 Sum_probs=10.9
Q ss_pred ceeeeecCCCCcccccCC
Q 004928 495 QWLIPVMSPSEGLIYKPY 512 (723)
Q Consensus 495 QWLvPVMSPSEGLVYKPy 512 (723)
|||+||. ||=||.
T Consensus 5 QwLlPVL-----LIPKp~ 17 (87)
T KOG4489|consen 5 QWLLPVL-----LIPKPI 17 (87)
T ss_pred Hhhhhhe-----ecCCCC
Confidence 9999998 777754
No 9
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=17.25 E-value=2.5e+02 Score=33.53 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=39.8
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004928 516 GFMGTVCGGGCSPFGPAPLTGNFMHPDYGITSPIPLQGNGVMPGAHLVGHGYFPPYGMP 574 (723)
Q Consensus 516 gf~~p~yg~~cgP~~~~p~~g~fmn~~Ygvp~~~~h~g~~~~pg~P~~~~~YfPP~gmp 574 (723)
.|-+|.|-+|.-|.-++.--|-|.+++.-+|.+..|.-+ -|+.++..+-|-||-.|+
T Consensus 539 q~~~p~y~~G~~P~P~P~pqg~yv~p~a~lp~pg~~~y~--~p~p~~n~~~~ppp~~~~ 595 (694)
T KOG4264|consen 539 QASSPNYRGGSHPHPYPSPQGGYVSPNADLPSPGGGGYH--GPPPHHNNHHNPPPKRFV 595 (694)
T ss_pred hhcCCcccCCCCCCCCCCCcccccCCcccCCCCCcccCC--CCCCCCCCCCCCCccccC
Confidence 677889988888888887778888887667754322111 245666666777777776
No 10
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=15.84 E-value=6.1e+02 Score=31.54 Aligned_cols=23 Identities=26% Similarity=0.101 Sum_probs=13.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q 004928 527 SPFGPAPLTGNFMHPDYGITSPI 549 (723)
Q Consensus 527 gP~~~~p~~g~fmn~~Ygvp~~~ 549 (723)
+|.+..|..|.=++..|++|++.
T Consensus 574 ~~~~~~P~~g~~p~~~~~~P~~~ 596 (756)
T KOG2375|consen 574 PVPGYNPQMGNPPTGTSVAPSPN 596 (756)
T ss_pred CCCCCCcccCCCCCcceecCCCC
Confidence 34455566666666666666543
Done!