Query 004928
Match_columns 723
No_of_seqs 44 out of 46
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 10:04:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004928.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004928hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j9ub1 g.41.11.1 (B:115-161) 11.0 52 0.0038 24.4 1.8 31 495-527 3-33 (47)
2 d2pspa1 g.16.1.1 (A:1-53) Panc 10.5 39 0.0028 25.4 0.9 10 483-492 42-51 (53)
3 d1qqp1_ b.121.4.1 (1:) Aphthov 9.3 90 0.0065 29.1 3.2 38 478-527 97-135 (210)
4 d2fo1d1 a.137.14.1 (D:52-114) 6.4 1.1E+02 0.0077 23.5 1.8 26 354-381 28-53 (63)
5 d1okia1 b.11.1.1 (A:54-144) be 6.1 51 0.0037 26.4 -0.2 6 35-40 6-11 (91)
6 d1t07a_ d.279.1.1 (A:) Hypothe 6.0 53 0.0039 26.7 -0.1 12 504-515 16-27 (81)
7 d1koha2 d.58.7.2 (A:105-200) m 5.1 94 0.0068 25.7 0.9 23 119-141 73-95 (96)
8 d1z2la2 d.58.19.1 (A:213-329) 5.0 1.9E+02 0.014 22.6 2.7 27 695-721 20-47 (117)
9 d1xs8a_ d.279.1.1 (A:) Hypothe 5.0 70 0.0051 26.4 -0.0 12 504-515 14-25 (91)
10 d1cg2a2 d.58.19.1 (A:214-326) 4.7 1E+02 0.0076 24.1 0.9 26 695-720 20-45 (113)
No 1
>d2j9ub1 g.41.11.1 (B:115-161) Vacuolar protein-sorting-associated protein 36, VPS36 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=11.02 E-value=52 Score=24.43 Aligned_cols=31 Identities=13% Similarity=0.426 Sum_probs=25.9
Q ss_pred ceeeeecCCCCcccccCCCCCCCCccccCCCCC
Q 004928 495 QWLIPVMSPSEGLIYKPYPGPGFMGTVCGGGCS 527 (723)
Q Consensus 495 QWLvPVMSPSEGLVYKPypGPgf~~p~yg~~cg 527 (723)
||-.|+-- -+--+|+-|.+=+.--|.|+ +||
T Consensus 3 ~W~CPICm-~~Ne~~~e~~~n~~~~p~C~-nCG 33 (47)
T d2j9ub1 3 TWVCPICM-VSNETQGEFTKDTLPTPICI-NCG 33 (47)
T ss_dssp EEECTTTC-CEEEESSCCCTTCSSCCBCT-TTC
T ss_pred ceecceee-eeccceeeeccCCCCCCccc-ccC
Confidence 78888744 66778999998888889999 998
No 2
>d2pspa1 g.16.1.1 (A:1-53) Pancreatic spasmolytic polypeptide {Pig (Sus scrofa) [TaxId: 9823]}
Probab=10.49 E-value=39 Score=25.37 Aligned_cols=10 Identities=40% Similarity=1.135 Sum_probs=7.8
Q ss_pred CCccccCCCC
Q 004928 483 MAHWCFHQSP 492 (723)
Q Consensus 483 ~~~wc~~ppp 492 (723)
-.||||+|.+
T Consensus 42 ~~PwCfyP~~ 51 (53)
T d2pspa1 42 GVPWCFKPLP 51 (53)
T ss_dssp TSCSEECCCC
T ss_pred CCCcCcccCC
Confidence 3589999883
No 3
>d1qqp1_ b.121.4.1 (1:) Aphthovirus (Foot-and-mouth disease virus) coat proteins {FMDV (Foot-and-mouth disease virus), strain bfs, 1860 [TaxId: 12110]}
Probab=9.35 E-value=90 Score=29.14 Aligned_cols=38 Identities=26% Similarity=0.590 Sum_probs=24.1
Q ss_pred cCCCCCCccccCCCCCCceeeeecCCCCcccccCCCCC-CCCccccCCCCC
Q 004928 478 ATNSRMAHWCFHQSPGQQWLIPVMSPSEGLIYKPYPGP-GFMGTVCGGGCS 527 (723)
Q Consensus 478 atd~k~~~wc~~pppgnQWLvPVMSPSEGLVYKPypGP-gf~~p~yg~~cg 527 (723)
+.|+..||-.|.--|.-+.-| ||..| +.++.+|-|.|-
T Consensus 97 ~~~~~~NPtv~~k~~~trFal------------PyTaPh~vLaT~YnG~~~ 135 (210)
T d1qqp1_ 97 ALDNTTNPTAYHKAPLTRLAL------------PYTAPHRVLATVYNGECR 135 (210)
T ss_dssp GGGCTTSSEECCCTTCEEEEE------------CCCCSSSSEESCCCSCCC
T ss_pred hhhcCCCceEEecCCcEEEEe------------ecccceeEEEEEECCccc
Confidence 346666776664332223333 66667 889999997775
No 4
>d2fo1d1 a.137.14.1 (D:52-114) Abnormal cell lineage protein 3, Lag-3 {Caenorhabditis elegans [TaxId: 6239]}
Probab=6.35 E-value=1.1e+02 Score=23.55 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHhhhhhhhhhHHhhHHHH
Q 004928 354 KHFWKARRAIVNQQRVFAVQVFELHRLI 381 (723)
Q Consensus 354 k~FWKarr~i~~QQrvFa~QVFELHRLi 381 (723)
..|-|+|-.+|.-||.-..|+| ||..
T Consensus 28 ~~~~k~r~e~i~~qravta~l~--~r~t 53 (63)
T d2fo1d1 28 ANYEKARPEMIANQRAVTAHLF--NRYT 53 (63)
T ss_dssp HHHHHSHHHHHHHHHHHHHHTH--HHHH
T ss_pred HHHHHhhHHHHHhHHHHHHHHH--HHhh
Confidence 5799999999999999999998 5654
No 5
>d1okia1 b.11.1.1 (A:54-144) beta-Crystallin {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.09 E-value=51 Score=26.42 Aligned_cols=6 Identities=17% Similarity=0.894 Sum_probs=2.6
Q ss_pred chhhhh
Q 004928 35 KMALYE 40 (723)
Q Consensus 35 KMALYE 40 (723)
|+-|||
T Consensus 6 kI~lye 11 (91)
T d1okia1 6 RLVVFE 11 (91)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 444444
No 6
>d1t07a_ d.279.1.1 (A:) Hypothetical protein PA5148 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=6.04 E-value=53 Score=26.66 Aligned_cols=12 Identities=50% Similarity=0.880 Sum_probs=10.3
Q ss_pred CCcccccCCCCC
Q 004928 504 SEGLIYKPYPGP 515 (723)
Q Consensus 504 SEGLVYKPypGP 515 (723)
-|||-|-||||+
T Consensus 16 ~~gLd~pP~PG~ 27 (81)
T d1t07a_ 16 LPGLDRPPYPGA 27 (81)
T ss_dssp EEBCSSCSSSSH
T ss_pred CcCCCCCCCCcH
Confidence 379999999987
No 7
>d1koha2 d.58.7.2 (A:105-200) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.09 E-value=94 Score=25.73 Aligned_cols=23 Identities=9% Similarity=0.134 Sum_probs=20.3
Q ss_pred ccCCCCCCceeeeeecCCCCCCC
Q 004928 119 KKVSEEDDFAVPIFDQAGMGQCH 141 (723)
Q Consensus 119 KK~~dEDDF~VP~~~~sg~~q~~ 141 (723)
.|+.++|.|.+.+++.++.++++
T Consensus 73 ~kI~~~dg~Kl~i~V~~~~pP~s 95 (96)
T d1koha2 73 YKILDRENRRISIIINSSAPPHT 95 (96)
T ss_dssp TTCCCTTSCCCCCCCEEECSTTC
T ss_pred CeEECCCCCEEEEEEcCCCCCCC
Confidence 67779999999999999998874
No 8
>d1z2la2 d.58.19.1 (A:213-329) Allantoate amidohydrolase AllC {Escherichia coli [TaxId: 562]}
Probab=4.99 E-value=1.9e+02 Score=22.64 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=22.6
Q ss_pred ec-CCCCchhhhHHHHHHHHHHHHhhcC
Q 004928 695 VP-HNPRSATESVARIFQSIQEERKQYD 721 (723)
Q Consensus 695 VP-HN~rsASESAARIFqSIQeERkq~d 721 (723)
.| |.++-|-..||+|.+.+++..++++
T Consensus 20 ~P~~~~~~al~aaa~~~~~l~~~~~~~~ 47 (117)
T d1z2la2 20 TPMGYRRDTVYAFSRICHQSVEKAKRMG 47 (117)
T ss_dssp SCGGGCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcc
Confidence 36 7888999999999999998876654
No 9
>d1xs8a_ d.279.1.1 (A:) Hypothetical protein YggX {Salmonella typhimurium [TaxId: 90371]}
Probab=4.95 E-value=70 Score=26.43 Aligned_cols=12 Identities=42% Similarity=0.880 Sum_probs=10.1
Q ss_pred CCcccccCCCCC
Q 004928 504 SEGLIYKPYPGP 515 (723)
Q Consensus 504 SEGLVYKPypGP 515 (723)
-|||-|-||||+
T Consensus 14 ~~gL~~pP~PG~ 25 (91)
T d1xs8a_ 14 AEGQDFQLYPGE 25 (91)
T ss_dssp EEBCCCCSSCSH
T ss_pred CcCCCCCCCCcH
Confidence 378999999987
No 10
>d1cg2a2 d.58.19.1 (A:214-326) Carboxypeptidase G2 {Pseudomonas sp., strain rs-16 [TaxId: 306]}
Probab=4.68 E-value=1e+02 Score=24.06 Aligned_cols=26 Identities=8% Similarity=0.001 Sum_probs=22.4
Q ss_pred ecCCCCchhhhHHHHHHHHHHHHhhc
Q 004928 695 VPHNPRSATESVARIFQSIQEERKQY 720 (723)
Q Consensus 695 VPHN~rsASESAARIFqSIQeERkq~ 720 (723)
.||+.+.|-..|++|...|++..++.
T Consensus 20 ~P~~g~nAi~~a~~~i~~l~~~~~~~ 45 (113)
T d1cg2a2 20 APELGVNALVEASDLVLRTMNIDDKA 45 (113)
T ss_dssp CGGGSBCHHHHHHHHHHHHGGGCBTT
T ss_pred CccccCcchHHHHHHHHHHHhhhccC
Confidence 69999999999999999998776544
Done!