Query 004929
Match_columns 723
No_of_seqs 589 out of 3712
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 10:06:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004929.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004929hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 7.4E-48 2.5E-52 417.6 28.1 222 104-337 23-253 (366)
2 3rlf_A Maltose/maltodextrin im 100.0 2.1E-47 7.1E-52 416.6 29.3 217 105-337 3-223 (381)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 1.1E-47 3.8E-52 416.0 26.1 217 105-337 4-228 (359)
4 1b0u_A Histidine permease; ABC 100.0 2.6E-47 8.8E-52 398.8 27.3 217 105-337 6-242 (262)
5 3tif_A Uncharacterized ABC tra 100.0 2.7E-47 9.2E-52 392.4 26.8 218 106-335 2-232 (235)
6 2olj_A Amino acid ABC transpor 100.0 3E-47 1E-51 398.0 27.4 217 105-337 24-248 (263)
7 3gfo_A Cobalt import ATP-bindi 100.0 4.5E-47 1.6E-51 399.0 28.1 218 105-337 7-233 (275)
8 1vpl_A ABC transporter, ATP-bi 100.0 1.4E-46 4.7E-51 391.7 28.6 219 104-338 14-236 (256)
9 2pcj_A ABC transporter, lipopr 100.0 9.4E-47 3.2E-51 385.7 26.6 210 105-331 4-222 (224)
10 1g6h_A High-affinity branched- 100.0 4.9E-47 1.7E-51 395.6 24.9 215 105-334 7-239 (257)
11 1z47_A CYSA, putative ABC-tran 100.0 2.2E-46 7.6E-51 405.9 28.1 219 104-337 13-235 (355)
12 1ji0_A ABC transporter; ATP bi 100.0 1.7E-46 5.7E-51 387.8 25.9 215 105-336 6-227 (240)
13 4g1u_C Hemin import ATP-bindin 100.0 2.6E-46 8.8E-51 391.9 27.2 215 104-336 10-236 (266)
14 1g29_1 MALK, maltose transport 100.0 3.9E-46 1.3E-50 407.2 29.6 217 105-337 3-229 (372)
15 2yyz_A Sugar ABC transporter, 100.0 2.4E-46 8.1E-51 406.6 27.1 217 105-337 3-223 (359)
16 2it1_A 362AA long hypothetical 100.0 2.3E-46 7.8E-51 407.1 26.9 217 105-337 3-223 (362)
17 1oxx_K GLCV, glucose, ABC tran 100.0 2.5E-46 8.6E-51 406.3 25.1 217 105-337 3-230 (353)
18 1v43_A Sugar-binding transport 100.0 4.6E-46 1.6E-50 406.1 25.0 217 105-337 11-231 (372)
19 3d31_A Sulfate/molybdate ABC t 100.0 6.7E-46 2.3E-50 401.7 25.9 212 106-337 2-217 (348)
20 2onk_A Molybdate/tungstate ABC 100.0 1.2E-45 4.1E-50 381.2 22.8 211 106-337 2-216 (240)
21 2yz2_A Putative ABC transporte 100.0 3.1E-45 1.1E-49 383.9 25.5 222 105-338 2-228 (266)
22 2d2e_A SUFC protein; ABC-ATPas 100.0 7E-45 2.4E-49 377.9 23.2 214 105-333 3-229 (250)
23 2ihy_A ABC transporter, ATP-bi 100.0 4.4E-45 1.5E-49 385.0 21.8 217 105-336 21-251 (279)
24 2nq2_C Hypothetical ABC transp 100.0 3.7E-44 1.2E-48 373.0 26.3 209 105-336 4-216 (253)
25 3nh6_A ATP-binding cassette SU 100.0 3.9E-44 1.3E-48 381.7 25.1 216 104-337 52-277 (306)
26 2zu0_C Probable ATP-dependent 100.0 6.1E-44 2.1E-48 374.2 24.2 219 105-337 20-254 (267)
27 2ff7_A Alpha-hemolysin translo 100.0 9E-44 3.1E-48 368.8 24.9 215 105-336 7-231 (247)
28 2qi9_C Vitamin B12 import ATP- 100.0 8.8E-44 3E-48 369.1 22.4 206 105-336 4-221 (249)
29 2ixe_A Antigen peptide transpo 100.0 5.5E-44 1.9E-48 375.3 19.4 217 105-337 16-245 (271)
30 1mv5_A LMRA, multidrug resista 100.0 7.8E-44 2.7E-48 368.5 18.0 215 106-337 2-226 (243)
31 2pjz_A Hypothetical protein ST 100.0 6.8E-43 2.3E-47 365.1 24.3 209 106-337 2-215 (263)
32 1sgw_A Putative ABC transporte 100.0 1.4E-43 4.7E-48 359.4 16.8 203 103-326 8-210 (214)
33 2ghi_A Transport protein; mult 100.0 1.3E-42 4.5E-47 362.7 24.2 217 104-337 16-242 (260)
34 2pze_A Cystic fibrosis transme 100.0 4.7E-42 1.6E-46 352.0 21.9 207 105-337 6-218 (229)
35 3gd7_A Fusion complex of cysti 100.0 2.4E-42 8.2E-47 379.0 19.8 215 104-337 18-242 (390)
36 2cbz_A Multidrug resistance-as 100.0 9.2E-42 3.2E-46 351.6 19.4 205 105-337 3-217 (237)
37 3b5x_A Lipid A export ATP-bind 100.0 1.9E-40 6.5E-45 384.1 26.6 218 104-337 340-567 (582)
38 4a82_A Cystic fibrosis transme 100.0 1.3E-40 4.4E-45 385.1 23.8 217 104-337 338-564 (578)
39 3b60_A Lipid A export ATP-bind 100.0 1.8E-40 6.2E-45 384.3 24.8 217 105-337 341-567 (582)
40 2yl4_A ATP-binding cassette SU 100.0 1.6E-40 5.5E-45 385.7 24.3 219 106-337 342-570 (595)
41 3qf4_A ABC transporter, ATP-bi 100.0 1.7E-40 5.9E-45 384.5 23.7 217 104-337 340-566 (587)
42 3qf4_B Uncharacterized ABC tra 100.0 1.4E-40 4.7E-45 386.3 19.5 216 104-337 353-578 (598)
43 2bbs_A Cystic fibrosis transme 100.0 1.4E-39 4.9E-44 344.5 18.5 202 105-337 40-247 (290)
44 4f4c_A Multidrug resistance pr 100.0 7.2E-39 2.5E-43 400.4 19.8 220 104-337 1075-1304(1321)
45 4f4c_A Multidrug resistance pr 100.0 2.4E-36 8.1E-41 377.7 41.1 218 104-337 414-641 (1321)
46 3g5u_A MCG1178, multidrug resi 100.0 5.2E-37 1.8E-41 382.8 23.6 218 104-337 386-613 (1284)
47 3g5u_A MCG1178, multidrug resi 100.0 7.2E-37 2.4E-41 381.5 20.6 220 104-337 1029-1258(1284)
48 1yqt_A RNAse L inhibitor; ATP- 100.0 3.5E-36 1.2E-40 344.5 20.3 206 103-337 285-493 (538)
49 3bk7_A ABC transporter ATP-bin 100.0 4.7E-36 1.6E-40 347.1 21.5 205 104-337 356-563 (607)
50 3ozx_A RNAse L inhibitor; ATP 100.0 1.2E-35 4.2E-40 339.3 21.3 207 103-336 267-476 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 1.6E-34 5.4E-39 333.8 17.2 203 109-338 350-560 (608)
52 2iw3_A Elongation factor 3A; a 100.0 3.5E-33 1.2E-37 333.9 25.1 200 103-337 433-635 (986)
53 3ux8_A Excinuclease ABC, A sub 100.0 4.7E-34 1.6E-38 335.8 15.6 208 122-337 30-298 (670)
54 3bk7_A ABC transporter ATP-bin 100.0 3E-34 1E-38 332.0 12.7 192 109-325 95-305 (607)
55 1yqt_A RNAse L inhibitor; ATP- 100.0 2.7E-34 9.3E-39 328.8 12.2 195 106-325 21-235 (538)
56 2iw3_A Elongation factor 3A; a 100.0 3.9E-33 1.3E-37 333.5 16.1 206 104-331 670-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 3.4E-32 1.1E-36 320.0 19.5 195 123-336 335-639 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 2.6E-31 8.9E-36 307.0 12.4 187 124-329 92-302 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 3.5E-31 1.2E-35 302.5 11.5 172 134-327 23-216 (538)
60 3pih_A Uvrabc system protein A 100.0 4.2E-29 1.5E-33 298.5 24.5 201 123-337 597-902 (916)
61 2r6f_A Excinuclease ABC subuni 100.0 1.6E-29 5.5E-34 300.1 17.7 209 104-337 628-942 (972)
62 2vf7_A UVRA2, excinuclease ABC 100.0 1.8E-29 6.2E-34 299.3 17.7 208 104-336 501-826 (842)
63 2ygr_A Uvrabc system protein A 100.0 4.5E-29 1.5E-33 297.3 16.8 209 104-337 646-960 (993)
64 2npi_A Protein CLP1; CLP1-PCF1 99.9 7.8E-31 2.7E-35 294.1 -9.5 185 127-335 129-336 (460)
65 4aby_A DNA repair protein RECN 99.9 3.5E-27 1.2E-31 261.5 15.1 202 124-330 49-381 (415)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 4E-24 1.4E-28 233.6 15.6 83 244-328 276-364 (365)
67 3b85_A Phosphate starvation-in 99.9 1.3E-27 4.5E-32 241.1 -11.6 143 122-308 12-159 (208)
68 4gp7_A Metallophosphoesterase; 99.9 3.7E-25 1.3E-29 216.0 2.1 146 128-312 1-163 (171)
69 1e69_A Chromosome segregation 99.9 3.9E-24 1.3E-28 229.8 9.8 88 244-334 216-310 (322)
70 1tq4_A IIGP1, interferon-induc 99.9 3.9E-26 1.3E-30 252.0 -13.2 171 122-318 35-247 (413)
71 1ye8_A Protein THEP1, hypothet 99.9 1.9E-23 6.6E-28 205.6 4.0 147 138-328 2-159 (178)
72 3b9q_A Chloroplast SRP recepto 99.9 1.5E-23 5.1E-28 223.1 -0.2 172 126-326 90-284 (302)
73 1znw_A Guanylate kinase, GMP k 99.9 1.9E-25 6.4E-30 224.6 -17.2 177 123-322 9-202 (207)
74 2v9p_A Replication protein E1; 99.8 7.6E-25 2.6E-29 232.5 -14.6 168 106-341 102-270 (305)
75 3sop_A Neuronal-specific septi 99.8 5.5E-23 1.9E-27 215.5 -3.5 145 138-307 4-150 (270)
76 2og2_A Putative signal recogni 99.8 2.4E-22 8.2E-27 218.1 1.0 171 127-326 148-341 (359)
77 2o5v_A DNA replication and rep 99.8 6.8E-20 2.3E-24 199.1 14.4 84 244-335 261-354 (359)
78 2pt7_A CAG-ALFA; ATPase, prote 99.8 1.8E-21 6E-26 209.8 0.8 130 125-326 160-292 (330)
79 1z6g_A Guanylate kinase; struc 99.8 4E-24 1.4E-28 217.0 -20.8 171 124-323 11-193 (218)
80 2dpy_A FLII, flagellum-specifi 99.8 7.8E-23 2.7E-27 228.0 -12.4 190 105-336 131-343 (438)
81 3pih_A Uvrabc system protein A 99.8 3.4E-20 1.2E-24 221.8 8.9 162 151-337 383-560 (916)
82 3qkt_A DNA double-strand break 99.8 6.5E-19 2.2E-23 190.4 17.2 80 244-325 245-332 (339)
83 3aez_A Pantothenate kinase; tr 99.8 6.1E-23 2.1E-27 219.4 -14.6 123 133-280 87-209 (312)
84 1tf7_A KAIC; homohexamer, hexa 99.8 1.4E-19 4.7E-24 206.9 10.1 156 130-325 275-444 (525)
85 1cr0_A DNA primase/helicase; R 99.8 2.7E-20 9.3E-25 196.9 3.5 183 123-326 22-237 (296)
86 2jeo_A Uridine-cytidine kinase 99.8 8.6E-21 2.9E-25 195.6 -2.6 178 121-338 10-188 (245)
87 1tf7_A KAIC; homohexamer, hexa 99.8 2.1E-21 7E-26 222.1 -10.1 167 122-324 24-210 (525)
88 2o8b_B DNA mismatch repair pro 99.8 6.6E-20 2.3E-24 222.7 1.9 172 105-333 750-938 (1022)
89 2r6f_A Excinuclease ABC subuni 99.8 1.7E-18 5.8E-23 206.0 12.5 133 195-336 450-599 (972)
90 2vf7_A UVRA2, excinuclease ABC 99.7 5.7E-19 1.9E-23 209.7 7.4 171 144-337 270-475 (842)
91 3thx_A DNA mismatch repair pro 99.7 2E-18 6.9E-23 207.4 11.4 152 122-335 648-811 (934)
92 2obl_A ESCN; ATPase, hydrolase 99.7 2.4E-20 8.1E-25 202.1 -5.3 185 105-335 45-253 (347)
93 2ehv_A Hypothetical protein PH 99.7 1.2E-19 4.2E-24 185.8 -0.7 167 125-322 18-206 (251)
94 2ygr_A Uvrabc system protein A 99.7 3.1E-18 1.1E-22 204.5 10.9 135 194-337 466-617 (993)
95 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 8.6E-18 2.9E-22 160.2 10.6 81 244-326 54-142 (148)
96 4a74_A DNA repair and recombin 99.7 5.9E-19 2E-23 178.4 1.5 154 131-325 20-201 (231)
97 2eyu_A Twitching motility prot 99.7 1.3E-18 4.5E-23 181.3 1.7 133 124-323 15-147 (261)
98 3asz_A Uridine kinase; cytidin 99.7 4.9E-20 1.7E-24 184.8 -11.0 145 133-307 3-161 (211)
99 1rj9_A FTSY, signal recognitio 99.7 2.7E-18 9.3E-23 182.7 0.4 147 135-308 101-259 (304)
100 3thx_B DNA mismatch repair pro 99.7 2.9E-17 9.9E-22 196.9 9.3 145 122-318 659-805 (918)
101 1ewq_A DNA mismatch repair pro 99.7 6.3E-18 2.2E-22 199.7 3.5 146 122-330 565-717 (765)
102 2qnr_A Septin-2, protein NEDD5 99.7 7.7E-19 2.6E-23 186.8 -6.6 161 109-307 2-167 (301)
103 2w0m_A SSO2452; RECA, SSPF, un 99.6 1.5E-16 5.1E-21 160.5 8.1 169 123-324 9-192 (235)
104 1wb9_A DNA mismatch repair pro 99.6 2.3E-17 8E-22 195.9 2.0 158 122-332 594-753 (800)
105 1nlf_A Regulatory protein REPA 99.6 5.1E-16 1.7E-20 162.8 11.5 149 133-307 27-181 (279)
106 1pzn_A RAD51, DNA repair and r 99.6 1.4E-17 4.9E-22 180.6 -3.2 167 124-331 118-309 (349)
107 3szr_A Interferon-induced GTP- 99.6 2.7E-18 9.4E-23 199.2 -10.7 192 105-339 10-239 (608)
108 2i3b_A HCR-ntpase, human cance 99.6 1.8E-17 6.1E-22 164.5 -5.9 155 136-330 1-169 (189)
109 3jvv_A Twitching mobility prot 99.6 3.7E-16 1.3E-20 169.7 3.5 127 132-324 119-246 (356)
110 1pui_A ENGB, probable GTP-bind 99.6 4.9E-17 1.7E-21 161.9 -4.0 174 106-299 4-202 (210)
111 2qag_C Septin-7; cell cycle, c 99.6 9.6E-17 3.3E-21 177.6 -3.5 163 105-307 11-177 (418)
112 2cvh_A DNA repair and recombin 99.6 7.4E-15 2.5E-19 147.2 10.6 152 124-324 7-185 (220)
113 3kta_B Chromosome segregation 99.5 1.5E-14 5.1E-19 141.3 9.4 79 244-325 61-145 (173)
114 2bdt_A BH3686; alpha-beta prot 99.5 2E-18 6.8E-23 170.1 -21.0 173 136-335 2-182 (189)
115 1zp6_A Hypothetical protein AT 99.5 8.6E-17 2.9E-21 158.2 -9.7 148 133-302 6-156 (191)
116 4ad8_A DNA repair protein RECN 99.5 2.5E-14 8.7E-19 163.0 9.1 78 244-324 393-473 (517)
117 1s96_A Guanylate kinase, GMP k 99.5 9.8E-16 3.3E-20 155.5 -2.4 147 132-340 12-163 (219)
118 2gza_A Type IV secretion syste 99.4 3E-14 1E-18 155.2 4.3 136 125-325 164-303 (361)
119 1lw7_A Transcriptional regulat 99.4 6.7E-17 2.3E-21 176.3 -16.7 169 125-321 157-341 (365)
120 2bbw_A Adenylate kinase 4, AK4 99.4 1.4E-16 5E-21 163.8 -13.6 146 135-297 26-200 (246)
121 1n0w_A DNA repair protein RAD5 99.4 2.6E-12 8.9E-17 130.5 14.7 152 131-325 19-210 (243)
122 2ewv_A Twitching motility prot 99.4 3.5E-14 1.2E-18 155.2 0.7 131 124-322 126-257 (372)
123 1nij_A Hypothetical protein YJ 99.4 2.3E-16 8E-21 168.9 -16.4 157 137-316 5-197 (318)
124 2qag_B Septin-6, protein NEDD5 99.4 6.3E-15 2.1E-19 162.7 -5.8 184 106-305 17-217 (427)
125 2yhs_A FTSY, cell division pro 99.4 2.7E-14 9.3E-19 159.6 -1.2 153 126-307 283-449 (503)
126 3e70_C DPA, signal recognition 99.4 9.4E-14 3.2E-18 149.1 1.8 160 134-326 127-306 (328)
127 2rcn_A Probable GTPase ENGC; Y 99.4 1.9E-13 6.6E-18 147.9 4.2 120 125-262 205-328 (358)
128 1htw_A HI0065; nucleotide-bind 99.3 2.3E-14 8E-19 137.9 -3.8 79 122-205 19-97 (158)
129 3auy_A DNA double-strand break 99.3 2.5E-12 8.5E-17 140.5 10.1 78 244-324 277-362 (371)
130 2f1r_A Molybdopterin-guanine d 99.3 1.1E-14 3.7E-19 142.1 -8.1 138 137-298 3-164 (171)
131 3ec2_A DNA replication protein 99.3 3E-13 1E-17 131.9 1.9 47 263-309 98-145 (180)
132 1udx_A The GTP-binding protein 99.3 2.1E-14 7E-19 158.8 -7.3 161 126-317 147-318 (416)
133 2kjq_A DNAA-related protein; s 99.3 2.2E-12 7.7E-17 122.7 6.2 95 125-309 30-127 (149)
134 1w1w_A Structural maintenance 99.3 5.8E-12 2E-16 140.2 10.1 75 246-322 332-410 (430)
135 2yv5_A YJEQ protein; hydrolase 99.3 4.5E-13 1.6E-17 142.3 1.0 117 134-261 163-301 (302)
136 1odf_A YGR205W, hypothetical 3 99.3 1.2E-13 4.1E-18 145.9 -3.7 129 135-282 30-169 (290)
137 2qm8_A GTPase/ATPase; G protei 99.3 2.6E-14 9E-19 154.2 -9.7 174 106-295 30-260 (337)
138 3lda_A DNA repair protein RAD5 99.2 2.8E-11 9.7E-16 133.1 13.2 158 125-325 166-364 (400)
139 1p9r_A General secretion pathw 99.2 1.2E-13 4.2E-18 152.8 -9.1 131 124-270 157-314 (418)
140 2oap_1 GSPE-2, type II secreti 99.2 1.5E-14 5.1E-19 164.1 -18.7 177 123-315 247-457 (511)
141 1sxj_E Activator 1 40 kDa subu 99.1 1.9E-11 6.4E-16 131.7 5.6 133 139-308 39-175 (354)
142 3c8u_A Fructokinase; YP_612366 99.1 6.3E-14 2.2E-18 140.4 -12.9 121 133-275 19-140 (208)
143 1u0l_A Probable GTPase ENGC; p 99.1 7.4E-12 2.5E-16 132.9 -0.3 104 133-250 166-294 (301)
144 1t9h_A YLOQ, probable GTPase E 99.0 3.9E-11 1.3E-15 127.4 2.0 115 131-255 168-303 (307)
145 1in4_A RUVB, holliday junction 99.0 1.2E-12 4E-17 141.0 -10.5 148 123-295 31-194 (334)
146 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 2E-13 6.9E-18 149.6 -17.1 169 132-333 16-209 (392)
147 2x8a_A Nuclear valosin-contain 99.0 1.5E-13 5.1E-18 144.0 -17.6 126 123-276 33-164 (274)
148 1lvg_A Guanylate kinase, GMP k 99.0 4.1E-13 1.4E-17 133.7 -14.1 57 258-323 116-173 (198)
149 2r6a_A DNAB helicase, replicat 99.0 1.1E-09 3.6E-14 122.9 10.0 173 123-326 190-401 (454)
150 1vma_A Cell division protein F 99.0 3.2E-10 1.1E-14 120.5 4.9 113 129-294 97-212 (306)
151 2dr3_A UPF0273 protein PH0284; 98.9 3E-09 1E-13 107.9 11.7 60 264-323 127-196 (247)
152 1sq5_A Pantothenate kinase; P- 98.9 1.1E-11 3.8E-16 131.9 -7.6 94 105-209 37-155 (308)
153 1ls1_A Signal recognition part 98.9 2.8E-09 9.6E-14 112.7 9.2 118 127-293 91-209 (295)
154 3k1j_A LON protease, ATP-depen 98.8 9.7E-11 3.3E-15 135.9 -6.1 159 122-292 46-227 (604)
155 2zr9_A Protein RECA, recombina 98.8 5.5E-09 1.9E-13 113.0 8.0 148 131-331 56-237 (349)
156 2ius_A DNA translocase FTSK; n 98.8 2.9E-10 1E-14 128.3 -2.5 177 128-320 159-361 (512)
157 3euj_A Chromosome partition pr 98.8 1.9E-09 6.6E-14 120.8 3.6 51 123-177 17-67 (483)
158 2px0_A Flagellar biosynthesis 98.8 6.5E-09 2.2E-13 109.9 7.3 141 134-329 103-247 (296)
159 3tr0_A Guanylate kinase, GMP k 98.6 2.1E-09 7.1E-14 106.3 -1.8 66 130-202 1-71 (205)
160 1oix_A RAS-related protein RAB 98.6 1.3E-09 4.6E-14 106.9 -3.4 38 254-293 152-189 (191)
161 1iy2_A ATP-dependent metallopr 98.6 2.8E-11 9.5E-16 126.5 -17.6 123 123-268 62-190 (278)
162 1ixz_A ATP-dependent metallopr 98.5 4.3E-11 1.5E-15 123.1 -17.6 123 123-268 38-166 (254)
163 3hr8_A Protein RECA; alpha and 98.5 4.3E-08 1.5E-12 106.0 2.7 32 131-162 56-87 (356)
164 3lnc_A Guanylate kinase, GMP k 98.4 4.8E-08 1.6E-12 98.9 2.3 40 123-162 14-54 (231)
165 2ce7_A Cell division protein F 98.4 3.8E-07 1.3E-11 102.4 8.1 59 250-308 93-165 (476)
166 2f9l_A RAB11B, member RAS onco 98.3 1.5E-07 5E-12 92.6 3.0 37 256-294 130-166 (199)
167 4a1f_A DNAB helicase, replicat 98.3 9E-07 3.1E-11 95.0 8.2 127 124-303 34-162 (338)
168 1qhl_A Protein (cell division 98.3 2.1E-08 7E-13 102.0 -4.4 57 105-177 9-65 (227)
169 2xau_A PRE-mRNA-splicing facto 98.3 2.6E-07 8.9E-12 109.9 3.8 81 245-325 188-270 (773)
170 3bh0_A DNAB-like replicative h 98.2 5.1E-06 1.7E-10 88.4 11.6 37 123-159 55-91 (315)
171 4eun_A Thermoresistant glucoki 98.2 4.1E-08 1.4E-12 97.2 -4.4 38 133-177 26-63 (200)
172 3nwj_A ATSK2; P loop, shikimat 98.2 1.5E-07 5.1E-12 97.0 -0.6 52 105-160 17-72 (250)
173 2qtf_A Protein HFLX, GTP-bindi 98.2 2.4E-06 8.4E-11 92.7 7.9 148 136-295 178-353 (364)
174 2e87_A Hypothetical protein PH 98.1 4.4E-06 1.5E-10 90.4 8.9 58 245-304 229-287 (357)
175 3a00_A Guanylate kinase, GMP k 98.1 8.4E-07 2.9E-11 86.7 1.8 27 136-162 1-27 (186)
176 3uie_A Adenylyl-sulfate kinase 98.0 2.7E-07 9.4E-12 91.2 -2.4 51 123-177 12-64 (200)
177 1zu4_A FTSY; GTPase, signal re 98.0 9.1E-07 3.1E-11 94.5 1.2 76 126-204 95-185 (320)
178 3kta_A Chromosome segregation 98.0 4.7E-06 1.6E-10 80.6 5.6 39 124-163 13-53 (182)
179 1v5w_A DMC1, meiotic recombina 98.0 3.2E-05 1.1E-09 83.2 12.4 142 126-306 111-273 (343)
180 2j41_A Guanylate kinase; GMP, 98.0 3.7E-06 1.3E-10 82.7 4.1 32 132-163 2-33 (207)
181 2z43_A DNA repair and recombin 98.0 3.4E-05 1.1E-09 82.3 11.9 142 125-306 95-257 (324)
182 3vaa_A Shikimate kinase, SK; s 98.0 3.3E-06 1.1E-10 83.3 3.6 39 122-160 11-49 (199)
183 1kgd_A CASK, peripheral plasma 97.9 3.9E-06 1.3E-10 81.6 3.4 36 135-172 4-39 (180)
184 1fnn_A CDC6P, cell division co 97.9 6.4E-05 2.2E-09 81.0 13.2 44 264-308 124-170 (389)
185 2z4s_A Chromosomal replication 97.9 1.4E-06 4.7E-11 97.2 -0.3 70 264-333 193-264 (440)
186 1jjv_A Dephospho-COA kinase; P 97.9 3.8E-06 1.3E-10 83.0 2.1 80 249-339 61-141 (206)
187 2vp4_A Deoxynucleoside kinase; 97.8 2.7E-06 9.3E-11 86.1 0.8 38 132-176 16-53 (230)
188 2dhr_A FTSH; AAA+ protein, hex 97.8 6.6E-08 2.3E-12 109.2 -12.4 125 124-276 54-187 (499)
189 3b9p_A CG5977-PA, isoform A; A 97.8 7.1E-05 2.4E-09 78.1 11.6 73 249-321 97-186 (297)
190 3t34_A Dynamin-related protein 97.8 2.6E-05 8.7E-10 84.3 7.3 57 248-306 155-212 (360)
191 3tau_A Guanylate kinase, GMP k 97.8 1.2E-05 4.1E-10 80.0 4.1 29 134-162 6-34 (208)
192 4e22_A Cytidylate kinase; P-lo 97.7 3.7E-06 1.3E-10 86.5 -1.1 41 134-177 25-76 (252)
193 1rz3_A Hypothetical protein rb 97.7 6.6E-06 2.3E-10 81.4 0.4 40 133-175 19-58 (201)
194 1svm_A Large T antigen; AAA+ f 97.6 9.9E-06 3.4E-10 88.3 1.2 44 123-172 156-199 (377)
195 3ney_A 55 kDa erythrocyte memb 97.6 1.7E-05 5.9E-10 78.6 2.7 27 135-161 18-44 (197)
196 1knq_A Gluconate kinase; ALFA/ 97.6 1.4E-05 4.8E-10 76.7 1.9 34 135-175 7-40 (175)
197 4ad8_A DNA repair protein RECN 97.6 1.4E-05 4.8E-10 90.8 2.1 155 124-300 49-246 (517)
198 3tqc_A Pantothenate kinase; bi 97.6 7.5E-06 2.5E-10 87.3 -0.5 41 122-162 72-118 (321)
199 2qt1_A Nicotinamide riboside k 97.6 3.9E-05 1.3E-09 75.8 4.4 29 132-160 17-45 (207)
200 1ega_A Protein (GTP-binding pr 97.6 3.3E-05 1.1E-09 81.5 3.8 63 248-318 101-169 (301)
201 3cf0_A Transitional endoplasmi 97.5 0.00014 4.9E-09 76.4 8.5 28 133-160 46-73 (301)
202 2dy1_A Elongation factor G; tr 97.5 2.8E-05 9.4E-10 91.0 3.2 43 131-175 4-46 (665)
203 3cr8_A Sulfate adenylyltranfer 97.5 1.7E-05 5.7E-10 90.7 1.1 42 132-176 365-408 (552)
204 2q6t_A DNAB replication FORK h 97.5 0.0003 1E-08 78.2 11.3 170 123-322 187-396 (444)
205 1kag_A SKI, shikimate kinase I 97.5 3.3E-05 1.1E-09 73.7 2.8 27 135-161 3-29 (173)
206 3kl4_A SRP54, signal recogniti 97.5 0.00011 3.9E-09 81.2 6.9 37 135-174 96-132 (433)
207 1u94_A RECA protein, recombina 97.4 0.0015 5.2E-08 70.5 15.1 35 125-159 50-86 (356)
208 2qby_A CDC6 homolog 1, cell di 97.4 4E-05 1.4E-09 82.2 1.9 27 135-161 44-70 (386)
209 3llm_A ATP-dependent RNA helic 97.4 2.3E-05 7.7E-10 79.4 -0.3 67 249-317 162-229 (235)
210 2w58_A DNAI, primosome compone 97.4 0.00021 7E-09 70.1 6.3 25 137-161 55-79 (202)
211 1l8q_A Chromosomal replication 97.3 0.0002 6.7E-09 75.9 6.5 47 263-309 96-143 (324)
212 1lv7_A FTSH; alpha/beta domain 97.3 0.00072 2.5E-08 68.9 10.4 23 139-161 48-70 (257)
213 1f2t_A RAD50 ABC-ATPase; DNA d 97.3 0.00012 4E-09 69.1 3.9 30 128-158 16-45 (149)
214 1ypw_A Transitional endoplasmi 97.3 0.00021 7.2E-09 85.4 6.6 32 131-162 233-264 (806)
215 1w1w_A Structural maintenance 97.3 0.0001 3.6E-09 81.5 3.6 33 131-163 21-53 (430)
216 2p67_A LAO/AO transport system 97.2 3.2E-05 1.1E-09 83.1 -1.2 50 123-175 43-92 (341)
217 2pez_A Bifunctional 3'-phospho 97.2 7.9E-05 2.7E-09 71.8 1.3 37 135-175 4-42 (179)
218 4eaq_A DTMP kinase, thymidylat 97.2 0.00015 5.3E-09 73.3 3.0 37 126-162 13-52 (229)
219 3lxx_A GTPase IMAP family memb 97.1 0.0027 9.1E-08 64.0 11.8 25 138-162 31-55 (239)
220 3bgw_A DNAB-like replicative h 97.1 0.0011 3.8E-08 73.7 9.6 36 124-159 185-220 (444)
221 2i1q_A DNA repair and recombin 97.0 0.0019 6.6E-08 68.3 10.2 34 125-158 86-120 (322)
222 3ice_A Transcription terminati 97.0 9.7E-05 3.3E-09 80.0 -0.2 52 105-160 133-198 (422)
223 2www_A Methylmalonic aciduria 97.0 0.00015 5.2E-09 78.1 1.2 39 135-176 73-111 (349)
224 1cke_A CK, MSSA, protein (cyti 97.0 0.00034 1.2E-08 69.7 3.4 25 136-160 5-29 (227)
225 2gj8_A MNME, tRNA modification 97.0 0.00087 3E-08 63.9 6.1 26 135-160 3-28 (172)
226 3m6a_A ATP-dependent protease 97.0 0.00013 4.6E-09 83.2 0.3 47 124-174 97-143 (543)
227 2qor_A Guanylate kinase; phosp 96.9 0.00032 1.1E-08 69.2 2.7 28 134-161 10-37 (204)
228 2b8t_A Thymidine kinase; deoxy 96.9 0.0011 3.8E-08 66.8 6.2 53 265-322 89-150 (223)
229 1m7g_A Adenylylsulfate kinase; 96.8 0.00018 6.1E-09 71.4 0.1 40 133-175 22-63 (211)
230 3h4m_A Proteasome-activating n 96.8 0.0018 6.3E-08 66.7 7.8 27 134-160 49-75 (285)
231 3bos_A Putative DNA replicatio 96.8 0.0014 4.9E-08 65.0 6.7 45 264-308 103-149 (242)
232 3qks_A DNA double-strand break 96.8 0.00062 2.1E-08 67.4 3.9 30 128-158 16-45 (203)
233 1xp8_A RECA protein, recombina 96.8 0.015 5.1E-07 62.9 14.6 27 132-158 70-96 (366)
234 1y63_A LMAJ004144AAA protein; 96.8 0.00064 2.2E-08 65.9 3.3 32 128-159 2-33 (184)
235 1np6_A Molybdopterin-guanine d 96.7 0.00057 1.9E-08 66.2 2.8 39 137-175 7-45 (174)
236 4fcw_A Chaperone protein CLPB; 96.7 0.0029 1E-07 65.9 8.4 27 136-162 47-73 (311)
237 1m2o_B GTP-binding protein SAR 96.7 0.0015 5.1E-08 63.3 5.6 35 124-159 12-46 (190)
238 3d8b_A Fidgetin-like protein 1 96.7 0.0055 1.9E-07 65.9 10.6 27 134-160 115-141 (357)
239 1mky_A Probable GTP-binding pr 96.7 0.0016 5.3E-08 72.3 6.4 39 138-176 182-229 (439)
240 2yvu_A Probable adenylyl-sulfa 96.7 0.0005 1.7E-08 66.5 1.9 29 134-162 11-39 (186)
241 2if2_A Dephospho-COA kinase; a 96.7 0.00075 2.5E-08 66.1 3.0 21 138-158 3-23 (204)
242 2ffh_A Protein (FFH); SRP54, s 96.6 0.00054 1.9E-08 75.6 1.7 45 127-176 91-135 (425)
243 1q57_A DNA primase/helicase; d 96.6 0.013 4.3E-07 66.1 12.8 35 124-158 230-264 (503)
244 1f6b_A SAR1; gtpases, N-termin 96.6 0.00063 2.1E-08 66.5 1.8 36 123-159 13-48 (198)
245 2p5t_B PEZT; postsegregational 96.6 0.00059 2E-08 69.8 1.5 39 132-175 28-66 (253)
246 2ga8_A Hypothetical 39.9 kDa p 96.5 0.00039 1.3E-08 74.7 0.1 37 124-160 10-48 (359)
247 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.0081 2.8E-07 60.8 9.9 26 135-160 38-63 (262)
248 2qgz_A Helicase loader, putati 96.5 0.0016 5.4E-08 68.8 4.5 52 263-314 212-265 (308)
249 2v1u_A Cell division control p 96.5 0.0029 9.9E-08 67.7 6.4 26 135-160 43-68 (387)
250 3t61_A Gluconokinase; PSI-biol 96.4 0.0013 4.4E-08 64.5 2.9 25 136-160 18-42 (202)
251 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.02 6.8E-07 60.6 12.1 27 134-160 43-69 (322)
252 3cm0_A Adenylate kinase; ATP-b 96.4 0.0016 5.5E-08 62.6 3.2 25 135-159 3-27 (186)
253 1j8m_F SRP54, signal recogniti 96.3 0.00045 1.5E-08 72.7 -1.0 44 129-176 92-135 (297)
254 1qhx_A CPT, protein (chloramph 96.3 0.0021 7.1E-08 61.3 3.8 26 136-161 3-28 (178)
255 2wji_A Ferrous iron transport 96.3 0.0019 6.5E-08 60.8 3.5 24 138-161 5-28 (165)
256 2ohf_A Protein OLA1, GTP-bindi 96.3 0.0018 6.3E-08 70.6 3.5 45 131-175 17-69 (396)
257 3kb2_A SPBC2 prophage-derived 96.3 0.002 7E-08 60.7 3.4 23 138-160 3-25 (173)
258 1sxj_C Activator 1 40 kDa subu 96.2 0.00069 2.4E-08 72.2 -0.3 40 123-162 31-72 (340)
259 3auy_A DNA double-strand break 96.2 0.0036 1.2E-07 67.7 5.3 31 126-157 16-46 (371)
260 1q3t_A Cytidylate kinase; nucl 96.2 0.0026 8.7E-08 64.1 3.6 27 134-160 14-40 (236)
261 1kht_A Adenylate kinase; phosp 96.0 0.0033 1.1E-07 60.3 3.6 25 136-160 3-27 (192)
262 3r20_A Cytidylate kinase; stru 96.0 0.0031 1.1E-07 64.0 3.4 25 136-160 9-33 (233)
263 2zej_A Dardarin, leucine-rich 96.0 0.0029 9.9E-08 60.7 3.1 23 138-160 4-26 (184)
264 3io5_A Recombination and repai 96.0 0.025 8.5E-07 59.8 10.4 27 131-158 24-51 (333)
265 2wjg_A FEOB, ferrous iron tran 96.0 0.0034 1.2E-07 59.9 3.5 22 138-159 9-30 (188)
266 2ze6_A Isopentenyl transferase 96.0 0.0033 1.1E-07 64.3 3.3 24 137-160 2-25 (253)
267 2rhm_A Putative kinase; P-loop 95.9 0.0038 1.3E-07 60.1 3.4 26 135-160 4-29 (193)
268 1gvn_B Zeta; postsegregational 95.9 0.0038 1.3E-07 65.2 3.5 35 135-174 32-66 (287)
269 3trf_A Shikimate kinase, SK; a 95.9 0.0044 1.5E-07 59.5 3.6 26 135-160 4-29 (185)
270 3lw7_A Adenylate kinase relate 95.9 0.0041 1.4E-07 58.3 3.3 19 138-156 3-21 (179)
271 3cmw_A Protein RECA, recombina 95.8 0.064 2.2E-06 68.2 14.7 35 125-159 370-406 (1706)
272 2qag_A Septin-2, protein NEDD5 95.8 0.0029 1E-07 68.3 2.3 47 105-162 17-63 (361)
273 2r8r_A Sensor protein; KDPD, P 95.8 0.0026 8.8E-08 64.1 1.7 75 260-341 79-175 (228)
274 1ex7_A Guanylate kinase; subst 95.8 0.0038 1.3E-07 61.1 2.7 24 138-161 3-26 (186)
275 2v54_A DTMP kinase, thymidylat 95.8 0.0054 1.8E-07 59.7 3.8 26 135-160 3-28 (204)
276 1vht_A Dephospho-COA kinase; s 95.8 0.005 1.7E-07 60.9 3.6 23 136-158 4-26 (218)
277 3iij_A Coilin-interacting nucl 95.7 0.0046 1.6E-07 59.2 3.2 25 135-159 10-34 (180)
278 2jaq_A Deoxyguanosine kinase; 95.7 0.005 1.7E-07 59.7 3.4 23 138-160 2-24 (205)
279 2plr_A DTMP kinase, probable t 95.7 0.0059 2E-07 59.6 3.7 27 135-161 3-29 (213)
280 1ly1_A Polynucleotide kinase; 95.6 0.006 2E-07 57.9 3.4 22 137-158 3-24 (181)
281 1via_A Shikimate kinase; struc 95.6 0.0058 2E-07 58.3 3.2 23 138-160 6-28 (175)
282 3cmw_A Protein RECA, recombina 95.6 0.11 3.9E-06 66.0 15.6 29 132-160 728-756 (1706)
283 2wwf_A Thymidilate kinase, put 95.6 0.0063 2.1E-07 59.6 3.4 26 135-160 9-34 (212)
284 3hu3_A Transitional endoplasmi 95.6 0.015 5.3E-07 65.2 7.0 28 133-160 235-262 (489)
285 2qp9_X Vacuolar protein sortin 95.6 0.038 1.3E-06 59.2 9.9 27 134-160 82-108 (355)
286 1uf9_A TT1252 protein; P-loop, 95.6 0.0064 2.2E-07 59.0 3.4 24 136-159 8-31 (203)
287 2c95_A Adenylate kinase 1; tra 95.5 0.0063 2.1E-07 58.7 3.3 26 135-160 8-33 (196)
288 1xjc_A MOBB protein homolog; s 95.5 0.0049 1.7E-07 59.3 2.3 26 137-162 5-30 (169)
289 1gtv_A TMK, thymidylate kinase 95.5 0.0031 1.1E-07 61.9 1.0 24 138-161 2-25 (214)
290 1nn5_A Similar to deoxythymidy 95.4 0.0075 2.6E-07 59.1 3.4 26 135-160 8-33 (215)
291 1tev_A UMP-CMP kinase; ploop, 95.4 0.0082 2.8E-07 57.6 3.6 24 136-159 3-26 (196)
292 1nks_A Adenylate kinase; therm 95.4 0.0074 2.5E-07 57.8 3.2 24 138-161 3-26 (194)
293 4b4t_L 26S protease subunit RP 95.2 0.074 2.5E-06 58.7 10.9 28 133-160 212-239 (437)
294 3k53_A Ferrous iron transport 95.2 0.0079 2.7E-07 61.9 2.9 23 138-160 5-27 (271)
295 3cmu_A Protein RECA, recombina 95.2 0.11 3.8E-06 67.0 13.7 35 125-159 370-406 (2050)
296 4b4t_K 26S protease regulatory 95.2 0.076 2.6E-06 58.5 10.8 27 134-160 204-230 (428)
297 1aky_A Adenylate kinase; ATP:A 95.1 0.011 3.9E-07 58.5 3.8 26 135-160 3-28 (220)
298 3ake_A Cytidylate kinase; CMP 95.1 0.0099 3.4E-07 57.8 3.2 23 138-160 4-26 (208)
299 2bwj_A Adenylate kinase 5; pho 95.1 0.01 3.6E-07 57.3 3.3 27 134-160 10-36 (199)
300 2z0h_A DTMP kinase, thymidylat 95.1 0.011 3.8E-07 57.0 3.4 23 138-160 2-24 (197)
301 3ihw_A Centg3; RAS, centaurin, 95.1 0.023 7.9E-07 54.4 5.6 22 138-159 22-43 (184)
302 1xx6_A Thymidine kinase; NESG, 95.1 0.029 1E-06 54.9 6.3 53 265-322 81-142 (191)
303 4b4t_I 26S protease regulatory 95.0 0.079 2.7E-06 58.2 10.3 27 134-160 214-240 (437)
304 2vli_A Antibiotic resistance p 95.0 0.0085 2.9E-07 57.2 2.4 26 135-160 4-29 (183)
305 3vfd_A Spastin; ATPase, microt 95.0 0.12 4.1E-06 55.9 11.8 26 135-160 147-172 (389)
306 1ko7_A HPR kinase/phosphatase; 95.0 0.016 5.6E-07 61.1 4.7 35 124-159 133-167 (314)
307 4ag6_A VIRB4 ATPase, type IV s 95.0 0.0075 2.6E-07 65.5 2.1 45 265-309 262-309 (392)
308 2ged_A SR-beta, signal recogni 95.0 0.011 3.7E-07 56.7 3.0 23 138-160 50-72 (193)
309 1z2a_A RAS-related protein RAB 95.0 0.011 3.9E-07 54.7 3.0 23 138-160 7-29 (168)
310 2nzj_A GTP-binding protein REM 94.9 0.013 4.4E-07 54.8 3.3 23 138-160 6-28 (175)
311 4b4t_J 26S protease regulatory 94.9 0.087 3E-06 57.4 10.2 26 135-160 181-206 (405)
312 2j9r_A Thymidine kinase; TK1, 94.9 0.066 2.2E-06 53.3 8.5 53 265-322 101-162 (214)
313 2erx_A GTP-binding protein DI- 94.9 0.013 4.5E-07 54.4 3.3 23 138-160 5-27 (172)
314 1zd8_A GTP:AMP phosphotransfer 94.9 0.013 4.4E-07 58.4 3.3 26 135-160 6-31 (227)
315 1zuh_A Shikimate kinase; alpha 94.9 0.014 4.9E-07 55.0 3.5 25 136-160 7-31 (168)
316 2cdn_A Adenylate kinase; phosp 94.9 0.015 5.3E-07 56.6 3.8 26 135-160 19-44 (201)
317 3fb4_A Adenylate kinase; psych 94.9 0.013 4.6E-07 57.5 3.4 22 138-159 2-23 (216)
318 3q72_A GTP-binding protein RAD 94.9 0.011 3.7E-07 55.0 2.5 23 138-160 4-26 (166)
319 3b1v_A Ferrous iron uptake tra 94.9 0.019 6.4E-07 59.4 4.6 23 138-160 5-27 (272)
320 1kao_A RAP2A; GTP-binding prot 94.9 0.013 4.4E-07 54.1 3.0 23 138-160 5-27 (167)
321 1u8z_A RAS-related protein RAL 94.8 0.013 4.5E-07 54.1 3.0 23 138-160 6-28 (168)
322 2pbr_A DTMP kinase, thymidylat 94.8 0.014 4.9E-07 55.9 3.4 23 138-160 2-24 (195)
323 2dyk_A GTP-binding protein; GT 94.8 0.013 4.6E-07 53.9 3.0 23 138-160 3-25 (161)
324 2ce2_X GTPase HRAS; signaling 94.8 0.012 4.1E-07 54.1 2.7 23 138-160 5-27 (166)
325 1e6c_A Shikimate kinase; phosp 94.8 0.013 4.4E-07 55.3 2.9 24 137-160 3-26 (173)
326 3q85_A GTP-binding protein REM 94.8 0.015 5E-07 54.2 3.2 22 139-160 5-26 (169)
327 1jal_A YCHF protein; nucleotid 94.8 0.022 7.7E-07 61.4 5.0 24 136-159 2-25 (363)
328 2iyv_A Shikimate kinase, SK; t 94.7 0.013 4.4E-07 56.1 2.8 24 137-160 3-26 (184)
329 1z0j_A RAB-22, RAS-related pro 94.7 0.014 4.9E-07 54.1 3.0 23 138-160 8-30 (170)
330 1z08_A RAS-related protein RAB 94.7 0.015 5E-07 54.2 3.0 23 138-160 8-30 (170)
331 3tw8_B RAS-related protein RAB 94.7 0.014 4.7E-07 54.9 2.9 23 138-160 11-33 (181)
332 1ukz_A Uridylate kinase; trans 94.7 0.017 5.7E-07 56.3 3.6 25 136-160 15-39 (203)
333 2pt5_A Shikimate kinase, SK; a 94.7 0.017 5.8E-07 54.3 3.5 23 138-160 2-24 (168)
334 1ek0_A Protein (GTP-binding pr 94.7 0.015 5E-07 53.9 3.0 23 138-160 5-27 (170)
335 3dl0_A Adenylate kinase; phosp 94.7 0.016 5.5E-07 57.1 3.4 23 138-160 2-24 (216)
336 1c1y_A RAS-related protein RAP 94.7 0.015 5.1E-07 53.8 3.0 23 138-160 5-27 (167)
337 1wms_A RAB-9, RAB9, RAS-relate 94.7 0.015 5.3E-07 54.5 3.0 23 138-160 9-31 (177)
338 1ky3_A GTP-binding protein YPT 94.6 0.015 5.3E-07 54.6 3.0 23 138-160 10-32 (182)
339 1g16_A RAS-related protein SEC 94.6 0.014 4.8E-07 54.2 2.7 23 138-160 5-27 (170)
340 1zak_A Adenylate kinase; ATP:A 94.6 0.014 4.7E-07 57.9 2.8 26 135-160 4-29 (222)
341 1qf9_A UMP/CMP kinase, protein 94.6 0.017 5.7E-07 55.3 3.3 24 136-159 6-29 (194)
342 3lxw_A GTPase IMAP family memb 94.6 0.016 5.4E-07 58.9 3.2 24 138-161 23-46 (247)
343 1fzq_A ADP-ribosylation factor 94.6 0.014 4.7E-07 55.8 2.5 22 138-159 18-39 (181)
344 1svi_A GTP-binding protein YSX 94.6 0.015 5E-07 55.7 2.7 23 138-160 25-47 (195)
345 2lkc_A Translation initiation 94.6 0.022 7.4E-07 53.5 3.8 26 135-160 7-32 (178)
346 2fn4_A P23, RAS-related protei 94.6 0.015 5.2E-07 54.5 2.7 23 138-160 11-33 (181)
347 2orv_A Thymidine kinase; TP4A 94.5 0.1 3.5E-06 52.5 8.9 53 264-322 89-150 (234)
348 3a4m_A L-seryl-tRNA(SEC) kinas 94.5 0.02 6.8E-07 58.6 3.7 26 135-160 3-28 (260)
349 3pqc_A Probable GTP-binding pr 94.5 0.016 5.4E-07 55.3 2.7 23 138-160 25-47 (195)
350 3tlx_A Adenylate kinase 2; str 94.5 0.021 7.2E-07 57.8 3.7 25 135-159 28-52 (243)
351 3dm5_A SRP54, signal recogniti 94.5 0.25 8.7E-06 54.5 12.6 28 135-162 99-126 (443)
352 1uj2_A Uridine-cytidine kinase 94.5 0.019 6.5E-07 58.3 3.4 24 137-160 23-46 (252)
353 1r2q_A RAS-related protein RAB 94.5 0.018 6.2E-07 53.3 3.0 22 138-159 8-29 (170)
354 3clv_A RAB5 protein, putative; 94.5 0.018 6.1E-07 55.0 3.0 23 138-160 9-31 (208)
355 2qmh_A HPR kinase/phosphorylas 94.5 0.027 9.4E-07 55.5 4.3 26 135-160 33-58 (205)
356 4dsu_A GTPase KRAS, isoform 2B 94.4 0.018 6.3E-07 54.5 3.0 23 138-160 6-28 (189)
357 2grj_A Dephospho-COA kinase; T 94.4 0.02 7E-07 56.0 3.4 24 136-159 12-35 (192)
358 2hxs_A RAB-26, RAS-related pro 94.4 0.021 7E-07 53.7 3.3 23 138-160 8-30 (178)
359 3a8t_A Adenylate isopentenyltr 94.4 0.031 1.1E-06 59.5 5.0 26 135-160 39-64 (339)
360 2cxx_A Probable GTP-binding pr 94.4 0.017 5.8E-07 54.9 2.7 22 139-160 4-25 (190)
361 1upt_A ARL1, ADP-ribosylation 94.4 0.019 6.5E-07 53.4 3.0 22 138-159 9-30 (171)
362 3bc1_A RAS-related protein RAB 94.4 0.019 6.5E-07 54.5 3.0 23 138-160 13-35 (195)
363 2oil_A CATX-8, RAS-related pro 94.4 0.019 6.6E-07 55.0 3.0 23 138-160 27-49 (193)
364 3t1o_A Gliding protein MGLA; G 94.3 0.021 7E-07 54.5 3.2 25 138-162 16-40 (198)
365 1r8s_A ADP-ribosylation factor 94.3 0.02 6.9E-07 52.9 3.0 21 139-159 3-23 (164)
366 2g6b_A RAS-related protein RAB 94.2 0.021 7.3E-07 53.6 3.0 23 138-160 12-34 (180)
367 2y8e_A RAB-protein 6, GH09086P 94.2 0.02 6.8E-07 53.6 2.7 23 138-160 16-38 (179)
368 2a9k_A RAS-related protein RAL 94.2 0.022 7.4E-07 53.8 3.0 23 138-160 20-42 (187)
369 1z0f_A RAB14, member RAS oncog 94.2 0.022 7.5E-07 53.3 3.0 23 138-160 17-39 (179)
370 1wf3_A GTP-binding protein; GT 94.2 0.024 8.1E-07 59.5 3.5 23 138-160 9-31 (301)
371 1moz_A ARL1, ADP-ribosylation 94.2 0.014 4.8E-07 55.2 1.5 23 136-158 18-40 (183)
372 3con_A GTPase NRAS; structural 94.1 0.023 7.7E-07 54.2 3.0 23 138-160 23-45 (190)
373 3t5d_A Septin-7; GTP-binding p 94.1 0.019 6.6E-07 59.1 2.6 23 138-160 10-32 (274)
374 2efe_B Small GTP-binding prote 94.1 0.024 8.1E-07 53.4 3.0 23 138-160 14-36 (181)
375 2xb4_A Adenylate kinase; ATP-b 94.0 0.027 9.4E-07 56.0 3.4 23 138-160 2-24 (223)
376 2f6r_A COA synthase, bifunctio 94.0 0.024 8.3E-07 58.8 3.2 23 136-158 75-97 (281)
377 1jbk_A CLPB protein; beta barr 94.0 0.032 1.1E-06 52.6 3.7 26 135-160 42-67 (195)
378 1nrj_B SR-beta, signal recogni 94.0 0.025 8.4E-07 55.4 3.0 23 138-160 14-36 (218)
379 2bov_A RAla, RAS-related prote 94.0 0.025 8.5E-07 54.5 3.0 23 138-160 16-38 (206)
380 3iby_A Ferrous iron transport 94.0 0.023 8E-07 58.1 2.9 23 138-160 3-25 (256)
381 1a7j_A Phosphoribulokinase; tr 94.0 0.014 4.8E-07 61.0 1.2 26 135-160 4-29 (290)
382 3be4_A Adenylate kinase; malar 94.0 0.027 9.3E-07 55.7 3.3 26 135-160 4-29 (217)
383 2bme_A RAB4A, RAS-related prot 94.0 0.023 8E-07 53.8 2.7 23 138-160 12-34 (186)
384 3iev_A GTP-binding protein ERA 94.0 0.027 9.3E-07 59.2 3.5 23 138-160 12-34 (308)
385 1vg8_A RAS-related protein RAB 94.0 0.026 8.8E-07 54.6 3.0 23 138-160 10-32 (207)
386 2gf9_A RAS-related protein RAB 93.9 0.026 8.9E-07 53.9 3.0 23 138-160 24-46 (189)
387 1ksh_A ARF-like protein 2; sma 93.9 0.027 9.2E-07 53.5 3.0 25 136-160 18-42 (186)
388 3tkl_A RAS-related protein RAB 93.9 0.027 9.1E-07 53.9 3.0 23 138-160 18-40 (196)
389 3cbq_A GTP-binding protein REM 93.9 0.022 7.4E-07 55.3 2.3 22 138-159 25-46 (195)
390 2gf0_A GTP-binding protein DI- 93.9 0.025 8.6E-07 54.2 2.7 23 138-160 10-32 (199)
391 2xtp_A GTPase IMAP family memb 93.9 0.026 9E-07 57.3 3.0 23 138-160 24-46 (260)
392 2dby_A GTP-binding protein; GD 93.9 0.025 8.7E-07 61.1 3.0 22 139-160 4-25 (368)
393 3kkq_A RAS-related protein M-R 93.9 0.028 9.5E-07 53.1 3.0 23 138-160 20-42 (183)
394 1mh1_A RAC1; GTP-binding, GTPa 93.8 0.029 9.8E-07 53.0 3.0 22 138-159 7-28 (186)
395 2fg5_A RAB-22B, RAS-related pr 93.8 0.026 9E-07 54.2 2.7 23 138-160 25-47 (192)
396 1m7b_A RND3/RHOE small GTP-bin 93.8 0.026 9E-07 53.7 2.7 23 138-160 9-31 (184)
397 1zbd_A Rabphilin-3A; G protein 93.8 0.031 1.1E-06 53.9 3.2 23 138-160 10-32 (203)
398 1z06_A RAS-related protein RAB 93.7 0.03 1E-06 53.4 3.0 23 138-160 22-44 (189)
399 1ltq_A Polynucleotide kinase; 93.7 0.033 1.1E-06 57.8 3.5 23 137-159 3-25 (301)
400 1e4v_A Adenylate kinase; trans 93.7 0.031 1.1E-06 55.1 3.1 23 138-160 2-24 (214)
401 2il1_A RAB12; G-protein, GDP, 93.7 0.029 9.9E-07 53.9 2.8 22 139-160 29-50 (192)
402 1ak2_A Adenylate kinase isoenz 93.7 0.038 1.3E-06 55.3 3.8 26 135-160 15-40 (233)
403 2wsm_A Hydrogenase expression/ 93.7 0.03 1E-06 54.9 3.0 24 137-160 31-54 (221)
404 3cmu_A Protein RECA, recombina 93.7 0.38 1.3E-05 62.1 13.6 36 123-158 1066-1103(2050)
405 3a1s_A Iron(II) transport prot 93.7 0.032 1.1E-06 57.1 3.3 23 138-160 7-29 (258)
406 4dhe_A Probable GTP-binding pr 93.7 0.017 5.9E-07 56.7 1.1 23 138-160 31-53 (223)
407 3oes_A GTPase rhebl1; small GT 93.7 0.029 9.8E-07 54.3 2.7 23 138-160 26-48 (201)
408 3umf_A Adenylate kinase; rossm 93.6 0.038 1.3E-06 55.3 3.6 26 135-160 28-53 (217)
409 4edh_A DTMP kinase, thymidylat 93.6 0.039 1.3E-06 54.9 3.7 28 135-162 5-32 (213)
410 2cjw_A GTP-binding protein GEM 93.6 0.032 1.1E-06 53.9 3.0 22 138-159 8-29 (192)
411 3bwd_D RAC-like GTP-binding pr 93.6 0.033 1.1E-06 52.4 3.0 23 138-160 10-32 (182)
412 2a5j_A RAS-related protein RAB 93.6 0.033 1.1E-06 53.4 3.0 22 139-160 24-45 (191)
413 3t5g_A GTP-binding protein RHE 93.6 0.03 1E-06 52.8 2.7 22 138-159 8-29 (181)
414 1njg_A DNA polymerase III subu 93.6 0.012 4.1E-07 57.7 -0.1 24 137-160 46-69 (250)
415 3i8s_A Ferrous iron transport 93.6 0.031 1.1E-06 57.6 3.0 23 138-160 5-27 (274)
416 3dz8_A RAS-related protein RAB 93.6 0.03 1E-06 53.6 2.7 23 138-160 25-47 (191)
417 2o52_A RAS-related protein RAB 93.5 0.033 1.1E-06 54.0 2.9 23 138-160 27-49 (200)
418 1jwy_B Dynamin A GTPase domain 93.5 0.031 1.1E-06 58.3 2.9 23 138-160 26-48 (315)
419 1zj6_A ADP-ribosylation factor 93.5 0.033 1.1E-06 53.0 2.9 23 137-159 17-39 (187)
420 1zd9_A ADP-ribosylation factor 93.5 0.034 1.2E-06 53.2 3.0 23 138-160 24-46 (188)
421 1x3s_A RAS-related protein RAB 93.5 0.034 1.2E-06 52.9 3.0 23 138-160 17-39 (195)
422 4bas_A ADP-ribosylation factor 93.5 0.033 1.1E-06 53.3 2.9 23 138-160 19-41 (199)
423 2atv_A RERG, RAS-like estrogen 93.5 0.035 1.2E-06 53.4 3.0 23 138-160 30-52 (196)
424 2qu8_A Putative nucleolar GTP- 93.5 0.034 1.2E-06 55.2 3.0 22 138-159 31-52 (228)
425 3tqf_A HPR(Ser) kinase; transf 93.5 0.054 1.8E-06 52.2 4.2 25 135-159 15-39 (181)
426 2h57_A ADP-ribosylation factor 93.5 0.026 8.9E-07 54.0 2.1 23 138-160 23-45 (190)
427 3zvl_A Bifunctional polynucleo 93.5 0.037 1.3E-06 60.8 3.6 26 134-159 256-281 (416)
428 2bcg_Y Protein YP2, GTP-bindin 93.5 0.031 1.1E-06 54.1 2.7 23 138-160 10-32 (206)
429 3d3q_A TRNA delta(2)-isopenten 93.5 0.037 1.3E-06 59.1 3.4 24 137-160 8-31 (340)
430 3reg_A RHO-like small GTPase; 93.5 0.035 1.2E-06 53.2 3.0 23 138-160 25-47 (194)
431 3cph_A RAS-related protein SEC 93.5 0.035 1.2E-06 53.9 3.0 23 138-160 22-44 (213)
432 2p5s_A RAS and EF-hand domain 93.4 0.036 1.2E-06 53.5 3.0 23 138-160 30-52 (199)
433 2f7s_A C25KG, RAS-related prot 93.4 0.039 1.3E-06 53.9 3.3 23 138-160 27-49 (217)
434 3v9p_A DTMP kinase, thymidylat 93.4 0.032 1.1E-06 56.1 2.7 27 135-161 24-50 (227)
435 2h17_A ADP-ribosylation factor 93.4 0.031 1.1E-06 53.0 2.5 22 138-159 23-44 (181)
436 2ew1_A RAS-related protein RAB 93.4 0.033 1.1E-06 54.4 2.7 23 138-160 28-50 (201)
437 3llu_A RAS-related GTP-binding 93.4 0.04 1.4E-06 53.1 3.2 24 138-161 22-45 (196)
438 3lv8_A DTMP kinase, thymidylat 93.3 0.042 1.5E-06 55.6 3.4 28 135-162 26-53 (236)
439 3exa_A TRNA delta(2)-isopenten 93.3 0.049 1.7E-06 57.5 3.9 25 136-160 3-27 (322)
440 2h92_A Cytidylate kinase; ross 93.3 0.032 1.1E-06 54.9 2.4 25 136-160 3-27 (219)
441 2p65_A Hypothetical protein PF 93.3 0.039 1.3E-06 52.0 2.9 27 135-161 42-68 (187)
442 2iwr_A Centaurin gamma 1; ANK 93.3 0.031 1.1E-06 52.5 2.2 22 138-159 9-30 (178)
443 2fv8_A H6, RHO-related GTP-bin 93.3 0.036 1.2E-06 53.9 2.7 23 138-160 27-49 (207)
444 2q3h_A RAS homolog gene family 93.3 0.043 1.5E-06 52.8 3.2 23 138-160 22-44 (201)
445 3crm_A TRNA delta(2)-isopenten 93.2 0.038 1.3E-06 58.6 2.9 24 137-160 6-29 (323)
446 3c5c_A RAS-like protein 12; GD 93.2 0.042 1.4E-06 52.6 3.0 23 138-160 23-45 (187)
447 2aka_B Dynamin-1; fusion prote 93.2 0.037 1.3E-06 57.1 2.7 23 138-160 28-50 (299)
448 2j1l_A RHO-related GTP-binding 93.1 0.042 1.4E-06 53.9 3.0 22 138-159 36-57 (214)
449 2fh5_B SR-beta, signal recogni 93.1 0.043 1.5E-06 53.5 3.0 23 138-160 9-31 (214)
450 1gwn_A RHO-related GTP-binding 93.1 0.04 1.4E-06 53.9 2.7 23 138-160 30-52 (205)
451 1qvr_A CLPB protein; coiled co 93.1 0.086 2.9E-06 63.3 6.2 25 137-161 589-613 (854)
452 1sky_E F1-ATPase, F1-ATP synth 93.0 0.053 1.8E-06 60.3 3.9 35 125-160 141-175 (473)
453 2fu5_C RAS-related protein RAB 93.0 0.03 1E-06 53.0 1.6 23 138-160 10-32 (183)
454 4tmk_A Protein (thymidylate ki 93.0 0.053 1.8E-06 54.0 3.5 28 135-162 2-29 (213)
455 3sr0_A Adenylate kinase; phosp 93.0 0.052 1.8E-06 53.7 3.4 22 138-159 2-23 (206)
456 3def_A T7I23.11 protein; chlor 92.9 0.045 1.5E-06 55.9 3.0 23 138-160 38-60 (262)
457 2gco_A H9, RHO-related GTP-bin 92.9 0.043 1.5E-06 53.1 2.7 23 138-160 27-49 (201)
458 2b6h_A ADP-ribosylation factor 92.9 0.041 1.4E-06 53.0 2.5 23 137-159 30-52 (192)
459 2ocp_A DGK, deoxyguanosine kin 92.9 0.053 1.8E-06 54.5 3.4 26 136-161 2-27 (241)
460 3tmk_A Thymidylate kinase; pho 92.9 0.054 1.8E-06 54.1 3.4 28 135-162 4-31 (216)
461 3ld9_A DTMP kinase, thymidylat 92.9 0.06 2E-06 54.0 3.7 27 135-161 20-46 (223)
462 1p5z_B DCK, deoxycytidine kina 92.8 0.038 1.3E-06 56.4 2.1 26 135-160 23-48 (263)
463 2zts_A Putative uncharacterize 92.8 0.07 2.4E-06 53.1 4.1 60 263-322 133-206 (251)
464 1h65_A Chloroplast outer envel 92.8 0.048 1.6E-06 55.9 2.9 23 138-160 41-63 (270)
465 2atx_A Small GTP binding prote 92.7 0.049 1.7E-06 52.1 2.7 23 138-160 20-42 (194)
466 1sxj_D Activator 1 41 kDa subu 92.7 0.024 8.3E-07 59.8 0.5 42 265-308 133-174 (353)
467 2g3y_A GTP-binding protein GEM 92.6 0.06 2E-06 53.3 3.3 22 138-159 39-60 (211)
468 4djt_A GTP-binding nuclear pro 92.5 0.028 9.6E-07 55.0 0.7 23 138-160 13-35 (218)
469 2hf9_A Probable hydrogenase ni 92.5 0.057 1.9E-06 53.2 2.9 24 137-160 39-62 (226)
470 3cnl_A YLQF, putative uncharac 92.4 0.07 2.4E-06 54.8 3.6 25 137-161 100-124 (262)
471 3cpj_B GTP-binding protein YPT 92.4 0.062 2.1E-06 53.0 3.1 23 138-160 15-37 (223)
472 2hup_A RAS-related protein RAB 92.3 0.058 2E-06 52.3 2.7 23 138-160 31-53 (201)
473 3foz_A TRNA delta(2)-isopenten 92.3 0.076 2.6E-06 55.9 3.8 25 136-160 10-34 (316)
474 2yc2_C IFT27, small RAB-relate 92.3 0.03 1E-06 54.0 0.5 22 138-159 22-43 (208)
475 2x77_A ADP-ribosylation factor 92.3 0.042 1.4E-06 52.4 1.5 23 137-159 23-45 (189)
476 2r62_A Cell division protease 92.2 0.025 8.6E-07 57.6 -0.1 22 139-160 47-68 (268)
477 4dcu_A GTP-binding protein ENG 92.2 0.059 2E-06 59.8 2.8 22 138-159 25-46 (456)
478 4gzl_A RAS-related C3 botulinu 92.1 0.064 2.2E-06 52.1 2.7 22 138-159 32-53 (204)
479 3eph_A TRNA isopentenyltransfe 92.0 0.075 2.6E-06 57.9 3.4 25 136-160 2-26 (409)
480 1ypw_A Transitional endoplasmi 92.0 0.031 1.1E-06 66.6 0.4 33 129-161 504-536 (806)
481 3q3j_B RHO-related GTP-binding 92.0 0.073 2.5E-06 52.3 3.0 23 138-160 29-51 (214)
482 2j0v_A RAC-like GTP-binding pr 91.9 0.069 2.4E-06 51.9 2.7 23 138-160 11-33 (212)
483 3n70_A Transport activator; si 91.8 0.084 2.9E-06 48.6 3.0 44 265-310 76-119 (145)
484 3gmt_A Adenylate kinase; ssgci 91.4 0.097 3.3E-06 52.7 3.2 23 138-160 10-32 (230)
485 3syl_A Protein CBBX; photosynt 91.3 0.11 3.6E-06 53.9 3.5 26 135-160 66-91 (309)
486 2orw_A Thymidine kinase; TMTK, 91.3 0.11 3.8E-06 50.2 3.4 53 265-322 76-137 (184)
487 2vhj_A Ntpase P4, P4; non- hyd 91.2 0.12 4.1E-06 54.7 3.8 29 131-159 118-146 (331)
488 2chg_A Replication factor C sm 91.1 0.11 3.7E-06 50.1 3.2 23 138-160 40-62 (226)
489 3euj_A Chromosome partition pr 90.8 0.33 1.1E-05 54.2 7.0 71 245-322 377-464 (483)
490 3p32_A Probable GTPase RV1496/ 90.7 0.12 4.1E-06 55.4 3.3 26 135-160 78-103 (355)
491 1puj_A YLQF, conserved hypothe 90.7 0.13 4.5E-06 53.3 3.5 25 136-160 120-144 (282)
492 1knx_A Probable HPR(Ser) kinas 90.7 0.21 7.3E-06 52.5 5.1 33 125-158 137-169 (312)
493 1d2n_A N-ethylmaleimide-sensit 90.6 0.13 4.4E-06 52.5 3.2 25 135-159 63-87 (272)
494 3th5_A RAS-related C3 botulinu 90.0 0.049 1.7E-06 52.7 0.0 22 138-159 32-53 (204)
495 1wxq_A GTP-binding protein; st 90.5 0.12 4E-06 56.5 3.0 22 139-160 3-24 (397)
496 3t15_A Ribulose bisphosphate c 90.5 0.13 4.3E-06 53.5 3.1 26 135-160 35-60 (293)
497 3eie_A Vacuolar protein sortin 90.4 0.14 4.9E-06 53.8 3.5 26 135-160 50-75 (322)
498 2x2e_A Dynamin-1; nitration, h 90.4 0.085 2.9E-06 56.4 1.7 23 138-160 33-55 (353)
499 1g8f_A Sulfate adenylyltransfe 90.4 0.13 4.4E-06 57.9 3.3 28 134-161 393-420 (511)
500 2hjg_A GTP-binding protein ENG 90.4 0.12 4E-06 57.0 2.9 22 138-159 5-26 (436)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=7.4e-48 Score=417.64 Aligned_cols=222 Identities=21% Similarity=0.264 Sum_probs=194.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004929 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++||++.|..+. ....+|+|||+++++||++||+||||||||||+|+|+|+++|+ +|+|.++|+++...
T Consensus 23 ~mi~v~~ls~~y~~~~-~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 23 HMIKLSNITKVFHQGT-RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSES 98 (366)
T ss_dssp CCEEEEEEEEEEECSS-SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHH
T ss_pred ceEEEEeEEEEeCCCC-CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHH
Confidence 3589999999996421 2356999999999999999999999999999999999999997 49999999986421
Q ss_pred -----CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004929 181 -----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
++.+|||+|++.+++.+||+||+.++...... ...+.+++++++++.+||.+.+++. +.+||||||||
T Consensus 99 ~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~-~~~~~~~~v~~lL~~vgL~~~~~~~------~~~LSGGqkQR 171 (366)
T 3tui_C 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT-PKDEVKRRVTELLSLVGLGDKHDSY------PSNLSGGQKQR 171 (366)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTCGGGTTCC------TTTSCHHHHHH
T ss_pred HHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchHhcCC------hhhCCHHHHHH
Confidence 24699999999999999999999998765321 1223567899999999999887764 55999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004929 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|+|||||+.+|++|||||||||||+.++..++++|+++++ .|.|||+++|+. .++.++||||++|++|++++.|++++
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~e 250 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSE 250 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999985 499999988876 57889999999999999999999998
Q ss_pred HHH
Q 004929 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
++.
T Consensus 251 v~~ 253 (366)
T 3tui_C 251 VFS 253 (366)
T ss_dssp HHS
T ss_pred HHh
Confidence 764
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2.1e-47 Score=416.58 Aligned_cols=217 Identities=28% Similarity=0.398 Sum_probs=193.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (723)
.++++||++.|. ++.+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~yg-----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~ 74 (381)
T 3rlf_A 3 SVQLQNVTKAWG-----EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAE 74 (381)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGG
T ss_pred EEEEEeEEEEEC-----CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHH
Confidence 489999999993 457999999999999999999999999999999999999987 4999999998542 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004929 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.+|||+|+..++|.+||+||+.|+...+. ....+.+++++++++.++|.+..++.+ ++|||||||||+||||
T Consensus 75 r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~~~~r~p------~~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAG-AKKEVINQRVNQVAEVLQLAHLLDRKP------KALSGGQRQRVAIGRT 147 (381)
T ss_dssp SCEEEECTTCCCCTTSCHHHHHTHHHHHTT-CCHHHHHHHHHHHHHHTTCGGGTTCCG------GGSCHHHHHHHHHHHH
T ss_pred CCEEEEecCCcCCCCCCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCchhhcCCh------hHCCHHHHHHHHHHHH
Confidence 579999999999999999999999876542 112235678999999999999887754 5999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004929 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|+.+|++|||||||||||+..+.++.+.|+++.++ |+|+|+++|+. .++..+||||++|++|+++..|+++++.+
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999999999999999999999999754 99999988876 58999999999999999999999999864
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.1e-47 Score=415.99 Aligned_cols=217 Identities=22% Similarity=0.323 Sum_probs=190.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC----CC-
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS----EM- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~----~~- 179 (723)
.++++||++.|. ++.+|+|||+.+++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++ ..
T Consensus 4 ~l~i~~ls~~y~-----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~ 75 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-----NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNL 75 (359)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBC
T ss_pred EEEEEeEEEEEC-----CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECccccccc
Confidence 489999999993 457999999999999999999999999999999999999997 49999999875 11
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004929 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
..+.+|||+|+..++|.+||+||+.|+...+.. ...+.+++++++++.+||.+.+++.+ .+|||||||||+
T Consensus 76 ~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~-~~~~~~~~v~~~l~~~gL~~~~~r~~------~~LSGGq~QRVa 148 (359)
T 3fvq_A 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKG-RTAQERQRIEAMLELTGISELAGRYP------HELSGGQQQRAA 148 (359)
T ss_dssp CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSC-CSHHHHHHHHHHHHHHTCGGGTTSCG------GGSCHHHHHHHH
T ss_pred chhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHcCCchHhcCCh------hhCCHHHHHHHH
Confidence 135699999999999999999999987543211 11235678999999999999888755 499999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004929 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
|||||+.+|++|||||||||||+..+.++++.|+++. +.|+|+|+++|+. .++..+||||++|++|+++..|+++++.
T Consensus 149 lArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 149 LARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHHHHH
Confidence 9999999999999999999999999999999888876 5699999988876 5889999999999999999999999986
Q ss_pred H
Q 004929 337 Q 337 (723)
Q Consensus 337 ~ 337 (723)
.
T Consensus 228 ~ 228 (359)
T 3fvq_A 228 R 228 (359)
T ss_dssp H
T ss_pred h
Confidence 4
No 4
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.6e-47 Score=398.77 Aligned_cols=217 Identities=24% Similarity=0.254 Sum_probs=189.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++||++.|. ++.+|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 6 ~l~i~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 77 (262)
T 1b0u_A 6 KLHVIDLHKRYG-----GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKD 77 (262)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTT
T ss_pred eEEEeeEEEEEC-----CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccccccc
Confidence 489999999993 357999999999999999999999999999999999999987 4999999987641
Q ss_pred -------------CCceEEEEcCCCccCCCCCHHHHHHHHH-HhcCCCccchHHHHHHHHHHHcCCchH-hhhhhcCCCC
Q 004929 180 -------------PYGSYGFVERETTLIGSLTVREYLYYSA-LLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCY 244 (723)
Q Consensus 180 -------------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~-~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~ 244 (723)
.++.++||+|++.+++.+||+||+.++. ... .....+.+++++++++.+||.+. .++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~----- 151 (262)
T 1b0u_A 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL-GLSKHDARERALKYLAKVGIDERAQGKYP----- 151 (262)
T ss_dssp SSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----
T ss_pred ccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc-CCCHHHHHHHHHHHHHHcCCCchhhcCCc-----
Confidence 0235999999999999999999999864 222 11112245678999999999988 87755
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCC
Q 004929 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (723)
Q Consensus 245 ~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (723)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+. .++..+||+|++|++|
T Consensus 152 -~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G 229 (262)
T 1b0u_A 152 -VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQG 229 (262)
T ss_dssp -GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH-HHHHHHCSEEEEEETT
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 49999999999999999999999999999999999999999999999987799999988876 5788899999999999
Q ss_pred eEEEEeChhHHHH
Q 004929 325 NTLFFGETLACLQ 337 (723)
Q Consensus 325 ~iv~~G~~~~~~~ 337 (723)
++++.|+++++.+
T Consensus 230 ~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 230 KIEEEGDPEQVFG 242 (262)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEeCCHHHHHh
Confidence 9999999988754
No 5
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.7e-47 Score=392.44 Aligned_cols=218 Identities=28% Similarity=0.325 Sum_probs=185.0
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 004929 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (723)
++++||++.|.++. ..+.+|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 2 l~~~~l~~~y~~~~-~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 2 VKLKNVTKTYKMGE-EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp EEEEEEEEEEEETT-EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHH
T ss_pred EEEEEEEEEeCCCC-cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHH
Confidence 68999999996321 1346999999999999999999999999999999999999987 49999999876421
Q ss_pred ----CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCC--ccchHHHHHHHHHHHcCCchHh-hhhhcCCCCCCCCCHHHH
Q 004929 181 ----YGSYGFVERETTLIGSLTVREYLYYSALLQLPG--FFCQRKNVVEDAIHAMSLSDYA-NKLIGGHCYMKGLPCGER 253 (723)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~~~~-~~~ig~~~~~~~LSGGer 253 (723)
++.++||+|++.+++.+||+||+.++....... ...+..+++.++++.++|.+.. ++. +.+||||||
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~LSgGq~ 151 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK------PNQLSGGQQ 151 (235)
T ss_dssp HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC------GGGSCHHHH
T ss_pred HHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC------hhhCCHHHH
Confidence 125999999999999999999999876543211 1122456788999999998753 654 459999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004929 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
|||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|++. +.++||+|++|++|+++..+++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~ 229 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKL 229 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcCh
Confidence 9999999999999999999999999999999999999999865 999999998874 4589999999999999999987
Q ss_pred hHH
Q 004929 333 LAC 335 (723)
Q Consensus 333 ~~~ 335 (723)
+++
T Consensus 230 ~~~ 232 (235)
T 3tif_A 230 RGF 232 (235)
T ss_dssp C--
T ss_pred hhh
Confidence 764
No 6
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3e-47 Score=398.05 Aligned_cols=217 Identities=24% Similarity=0.305 Sum_probs=189.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--C-C-
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--M-P- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~--~-~- 180 (723)
.++++||++.|. ++++|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++.. . .
T Consensus 24 ~l~i~~l~~~y~-----~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~ 95 (263)
T 2olj_A 24 MIDVHQLKKSFG-----SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNL 95 (263)
T ss_dssp SEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCH
T ss_pred eEEEEeEEEEEC-----CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccH
Confidence 489999999993 357999999999999999999999999999999999999987 499999998763 1 1
Q ss_pred ---CceEEEEcCCCccCCCCCHHHHHHHHH-HhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH
Q 004929 181 ---YGSYGFVERETTLIGSLTVREYLYYSA-LLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (723)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~-~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (723)
++.++||+|++.+++.+||+||+.++. ... .....+.+++++++++.+||.+..++.+ .+|||||||||
T Consensus 96 ~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~------~~LSgGqkQRv 168 (263)
T 2olj_A 96 NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR-KWPREKAEAKAMELLDKVGLKDKAHAYP------DSLSGGQAQRV 168 (263)
T ss_dssp HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS-CCCHHHHHHHHHHHHHHTTCGGGTTSCG------GGSCHHHHHHH
T ss_pred HHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCchHhcCCh------hhCCHHHHHHH
Confidence 235999999999999999999999864 222 1111224567899999999998887755 49999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004929 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 257 ~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+. .++.++||++++|++|++++.|+++++.
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 169 AIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999987799999988876 5788899999999999999999998875
Q ss_pred H
Q 004929 337 Q 337 (723)
Q Consensus 337 ~ 337 (723)
+
T Consensus 248 ~ 248 (263)
T 2olj_A 248 D 248 (263)
T ss_dssp H
T ss_pred h
Confidence 4
No 7
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=4.5e-47 Score=399.03 Aligned_cols=218 Identities=23% Similarity=0.313 Sum_probs=189.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++||++.|.+ ...+|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++...
T Consensus 7 ~l~i~~ls~~y~~----~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~ 79 (275)
T 3gfo_A 7 ILKVEELNYNYSD----GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGI 79 (275)
T ss_dssp EEEEEEEEEECTT----SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHH
T ss_pred EEEEEEEEEEECC----CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccH
Confidence 5899999999942 245999999999999999999999999999999999999987 49999999986321
Q ss_pred ---CceEEEEcCCC-ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH
Q 004929 181 ---YGSYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (723)
Q Consensus 181 ---~~~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (723)
++.+|||+|++ ..+..+||+||+.++..... ....+.+++++++++.+||.+..++.++ +|||||||||
T Consensus 80 ~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~------~LSgGqkQRv 152 (275)
T 3gfo_A 80 MKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK-LPEDEIRKRVDNALKRTGIEHLKDKPTH------CLSFGQKKRV 152 (275)
T ss_dssp HHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHTTCGGGTTSBGG------GSCHHHHHHH
T ss_pred HHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCchhhcCCcc------cCCHHHHHHH
Confidence 24699999986 33447899999999865421 1122345679999999999988877554 9999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004929 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 257 ~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
+|||||+.+|++|||||||+|||+.++..++++|++++ ++|+|||+++|+.. ++.++||||++|++|++++.|+++++
T Consensus 153 ~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~G~i~~~g~~~~~ 231 (275)
T 3gfo_A 153 AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEV 231 (275)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999998 67999999999874 78889999999999999999999987
Q ss_pred HH
Q 004929 336 LQ 337 (723)
Q Consensus 336 ~~ 337 (723)
.+
T Consensus 232 ~~ 233 (275)
T 3gfo_A 232 FA 233 (275)
T ss_dssp TH
T ss_pred hc
Confidence 54
No 8
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-46 Score=391.68 Aligned_cols=219 Identities=26% Similarity=0.309 Sum_probs=191.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004929 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++||++.|. ++.+|+|||+.+++||+++|+||||||||||||+|+|+++|+ +|+|.++|++....
T Consensus 14 ~~l~i~~l~~~y~-----~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~ 85 (256)
T 1vpl_A 14 GAVVVKDLRKRIG-----KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHE 85 (256)
T ss_dssp CCEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHH
T ss_pred CeEEEEEEEEEEC-----CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHH
Confidence 3589999999993 357999999999999999999999999999999999999987 49999999876421
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHH
Q 004929 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (723)
++.++|++|++.+++.+||+||+.+...... ....+.+++++++++.+||.+..++.++ +|||||||||+||
T Consensus 86 ~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~~------~LSgGq~qRv~lA 158 (256)
T 1vpl_A 86 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA-SSSSEIEEMVERATEIAGLGEKIKDRVS------TYSKGMVRKLLIA 158 (256)
T ss_dssp HHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHCCGGGGGSBGG------GCCHHHHHHHHHH
T ss_pred HhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC-CChHHHHHHHHHHHHHCCCchHhcCChh------hCCHHHHHHHHHH
Confidence 2469999999999999999999988654321 1111234678999999999988887554 9999999999999
Q ss_pred HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHH
Q 004929 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (723)
Q Consensus 260 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (723)
|||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++ .++..+||++++|++|++++.|+++++.+.
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKER 236 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999999999987899999988886 578889999999999999999999887653
No 9
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=9.4e-47 Score=385.67 Aligned_cols=210 Identities=25% Similarity=0.278 Sum_probs=183.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++||++.|. ++++|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 4 ~l~~~~l~~~y~-----~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 75 (224)
T 2pcj_A 4 ILRAENIKKVIR-----GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKE 75 (224)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHH
T ss_pred EEEEEeEEEEEC-----CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHH
Confidence 489999999993 357999999999999999999999999999999999999987 49999999876421
Q ss_pred -----CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004929 181 -----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
.+.++|++|++.+++.+||+||+.++..... ....+.+++++++++.+||.+..++.+ .+||||||||
T Consensus 76 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~qr 148 (224)
T 2pcj_A 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG-KPKKEAKERGEYLLSELGLGDKLSRKP------YELSGGEQQR 148 (224)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHTTCTTCTTCCG------GGSCHHHHHH
T ss_pred HHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHcCCchhhhCCh------hhCCHHHHHH
Confidence 1459999999999999999999998764431 111224567899999999998887755 4999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004929 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
|+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++ ..+ ++||++++|++|++++.|+
T Consensus 149 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 149 VAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER-ELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHH-HhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999999999999987799999988886 355 8999999999999999986
No 10
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=4.9e-47 Score=395.64 Aligned_cols=215 Identities=20% Similarity=0.238 Sum_probs=187.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++||++.|. ++++|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 7 ~l~i~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (257)
T 1g6h_A 7 ILRTENIVKYFG-----EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAE 78 (257)
T ss_dssp EEEEEEEEEEET-----TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHH
T ss_pred EEEEeeeEEEEC-----CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHH
Confidence 589999999993 357999999999999999999999999999999999999987 49999999886421
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHh-cCC-----------CccchHHHHHHHHHHHcCCchHhhhhhcCCCCCC
Q 004929 181 --YGSYGFVERETTLIGSLTVREYLYYSALL-QLP-----------GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~-~~~-----------~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 246 (723)
++.++||+|++.+++.+||+||+.++... ... ......+++++++++.+||.+..++.++
T Consensus 79 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------ 152 (257)
T 1g6h_A 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG------ 152 (257)
T ss_dssp HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG------
T ss_pred HHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCch------
Confidence 23599999999999999999999875432 111 1111245678999999999988877554
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004929 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 247 ~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++. ++.++||++++|++|++
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i 231 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFNGQI 231 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEETTEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999878999999999874 77889999999999999
Q ss_pred EEEeChhH
Q 004929 327 LFFGETLA 334 (723)
Q Consensus 327 v~~G~~~~ 334 (723)
++.|++++
T Consensus 232 ~~~g~~~~ 239 (257)
T 1g6h_A 232 IAEGRGEE 239 (257)
T ss_dssp EEEEESHH
T ss_pred EEEeCHHH
Confidence 99999887
No 11
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.2e-46 Score=405.91 Aligned_cols=219 Identities=25% Similarity=0.376 Sum_probs=192.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 004929 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---P 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~ 180 (723)
..++++||++.|. +++++|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. .
T Consensus 13 ~~l~~~~l~~~y~----g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~ 85 (355)
T 1z47_A 13 MTIEFVGVEKIYP----GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQ 85 (355)
T ss_dssp EEEEEEEEEECCT----TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGG
T ss_pred ceEEEEEEEEEEc----CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChh
Confidence 4689999999882 1346999999999999999999999999999999999999987 4999999987532 2
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHH
Q 004929 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (723)
++.++||+|+..++|.+||+||+.|+...+. ....+.+++++++++.+||.+.+++.+ .+|||||||||+|||
T Consensus 86 ~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~-~~~~~~~~~v~~~l~~~gL~~~~~r~~------~~LSGGq~QRvalAr 158 (355)
T 1z47_A 86 KRNVGLVFQNYALFQHMTVYDNVSFGLREKR-VPKDEMDARVRELLRFMRLESYANRFP------HELSGGQQQRVALAR 158 (355)
T ss_dssp GSSEEEECGGGCCCTTSCHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHTTCGGGTTSCG------GGSCHHHHHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCChhHhcCCc------ccCCHHHHHHHHHHH
Confidence 3579999999999999999999999865431 111234578999999999999888755 499999999999999
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004929 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 261 aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
||+.+|++|||||||+|||+.++.++++.|++++++ |+|+|+++|+. .++..+||||++|++|+++..|+++++.+
T Consensus 159 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 159 ALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp HHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999754 99999988876 57889999999999999999999998864
No 12
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-46 Score=387.77 Aligned_cols=215 Identities=22% Similarity=0.276 Sum_probs=186.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++||++.|. ++++|+|||+.+++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 6 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 77 (240)
T 1ji0_A 6 VLEVQSLHVYYG-----AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHH
T ss_pred eEEEEeEEEEEC-----CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHH
Confidence 589999999993 357999999999999999999999999999999999999987 49999999886421
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcC-CchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004929 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS-LSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
++.++|++|++.+++.+||+||+.++..... ...+.+++++++++.++ |.+..++. +.+|||||||||+
T Consensus 78 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~------~~~LSgGq~qrv~ 149 (240)
T 1ji0_A 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRK--DKEGIKRDLEWIFSLFPRLKERLKQL------GGTLSGGEQQMLA 149 (240)
T ss_dssp HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC--CSSHHHHHHHHHHHHCHHHHTTTTSB------SSSSCHHHHHHHH
T ss_pred HHhCCEEEEecCCccCCCCcHHHHHHHhhhcCC--CHHHHHHHHHHHHHHcccHhhHhcCC------hhhCCHHHHHHHH
Confidence 1349999999999999999999987531111 11224567888999995 87776664 4599999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004929 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 150 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 150 IGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999999999999999999999987899999988886 4788999999999999999999988764
No 13
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.6e-46 Score=391.87 Aligned_cols=215 Identities=24% Similarity=0.290 Sum_probs=188.7
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004929 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++||++.|. ++.+|+|||+++++||++||+||||||||||+|+|+|+++|++ |+|.++|++....
T Consensus 10 ~~l~~~~l~~~~~-----~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~~~~~~~~ 81 (266)
T 4g1u_C 10 ALLEASHLHYHVQ-----QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSH---GECHLLGQNLNSWQPK 81 (266)
T ss_dssp CEEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSS---CEEEETTEETTTSCHH
T ss_pred ceEEEEeEEEEeC-----CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEECCEECCcCCHH
Confidence 3689999999983 4579999999999999999999999999999999999999975 9999999986432
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004929 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
.+.++|++|++.+++.+||+||+.++.... .....+++++++++.++|.+..++.+ .+|||||||||+|
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~QRv~i 152 (266)
T 4g1u_C 82 ALARTRAVMRQYSELAFPFSVSEVIQMGRAPY---GGSQDRQALQQVMAQTDCLALAQRDY------RVLSGGEQQRVQL 152 (266)
T ss_dssp HHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS---CSTTHHHHHHHHHHHTTCSTTTTSBG------GGCCHHHHHHHHH
T ss_pred HHhheEEEEecCCccCCCCCHHHHHHhhhhhc---CcHHHHHHHHHHHHHcCChhHhcCCc------ccCCHHHHHHHHH
Confidence 235899999999888999999998764322 11235677899999999998887755 4999999999999
Q ss_pred HHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004929 259 ARELVM------RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 259 A~aL~~------~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
||||+. +|++|||||||+|||+.++..+++.|++++++ |+|||+++|+. .++.++||||++|++|++++.|+
T Consensus 153 AraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~~g~ 231 (266)
T 4g1u_C 153 ARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDL-NLAALYADRIMLLAQGKLVACGT 231 (266)
T ss_dssp HHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEcC
Confidence 999999 99999999999999999999999999999865 57999987776 57889999999999999999999
Q ss_pred hhHHH
Q 004929 332 TLACL 336 (723)
Q Consensus 332 ~~~~~ 336 (723)
++++.
T Consensus 232 ~~~~~ 236 (266)
T 4g1u_C 232 PEEVL 236 (266)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 98874
No 14
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3.9e-46 Score=407.22 Aligned_cols=217 Identities=24% Similarity=0.346 Sum_probs=191.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++||++.|. ++.+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~ 74 (372)
T 1g29_1 3 GVRLVDVWKVFG-----EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGI 74 (372)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTE
T ss_pred EEEEEeEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccc
Confidence 488999999993 357999999999999999999999999999999999999987 4999999986421
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004929 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
..+.+|||+|+..++|++||+||+.|+...+.. ...+.+++++++++.+||.+..++.+ .+||||||||
T Consensus 75 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~r~~------~~LSGGq~QR 147 (372)
T 1g29_1 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKV-PRQEIDQRVREVAELLGLTELLNRKP------RELSGGQRQR 147 (372)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHTCGGGTTCCG------GGSCHHHHHH
T ss_pred cCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHCCCchHhcCCc------ccCCHHHHHH
Confidence 235699999999999999999999998654321 11234567999999999999888755 4999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004929 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|+|||||+.+|++|||||||||||+.++.++.+.|+++.+ .|.|+|+++|+. .++..+||+|++|++|+++..|++++
T Consensus 148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999975 499999988886 57889999999999999999999998
Q ss_pred HHH
Q 004929 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
+.+
T Consensus 227 l~~ 229 (372)
T 1g29_1 227 VYD 229 (372)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
No 15
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2.4e-46 Score=406.58 Aligned_cols=217 Identities=23% Similarity=0.347 Sum_probs=190.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (723)
.++++||++.|. ++.+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~ 74 (359)
T 2yyz_A 3 SIRVVNLKKYFG-----KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKY 74 (359)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred EEEEEEEEEEEC-----CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhh
Confidence 378999999993 357999999999999999999999999999999999999987 4999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004929 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.+|||+|+..++|++||+||+.|+...+. ....+.+++++++++.++|.+..++.+ .+|||||||||+||||
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~~~~r~~------~~LSgGq~QRvalArA 147 (359)
T 2yyz_A 75 REVGMVFQNYALYPHMTVFENIAFPLRARR-ISKDEVEKRVVEIARKLLIDNLLDRKP------TQLSGGQQQRVALARA 147 (359)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHGGGSSSC-SHHHHTTHHHHHHHHHTTCGGGTTSCG------GGSCHHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCchHhcCCh------hhCCHHHHHHHHHHHH
Confidence 569999999999999999999988643221 111123467999999999999888755 4999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004929 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|+.+|++|||||||||||+.++..+.+.|+++.+ .|.|+|+++|+. .++..+||||++|++|+++..|+++++.+
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999975 499999988886 57889999999999999999999999864
No 16
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.3e-46 Score=407.14 Aligned_cols=217 Identities=25% Similarity=0.369 Sum_probs=191.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (723)
.++++||++.|. ++.+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~ 74 (362)
T 2it1_A 3 EIKLENIVKKFG-----NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKD 74 (362)
T ss_dssp CEEEEEEEEESS-----SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred EEEEEeEEEEEC-----CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhH
Confidence 378999999983 357999999999999999999999999999999999999987 4999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004929 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.+|||+|+..++|++||+||+.|+...+.. ...+.+++++++++.+||.+..++.+ .+|||||||||+||||
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~r~~------~~LSGGq~QRvalArA 147 (362)
T 2it1_A 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKA-PREEIDKKVREVAKMLHIDKLLNRYP------WQLSGGQQQRVAIARA 147 (362)
T ss_dssp TTEEEECTTCCCCTTSCHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHTTCTTCTTCCG------GGSCHHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchHhhCCh------hhCCHHHHHHHHHHHH
Confidence 5699999999999999999999998654311 11234567999999999998887755 4999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004929 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|+.+|++|||||||||||+..+.++.+.|+++++ .|.|+|+++|+. .++..+||||++|++|+++..|+++++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 148 LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp HTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999975 499999988876 57889999999999999999999998864
No 17
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.5e-46 Score=406.32 Aligned_cols=217 Identities=24% Similarity=0.337 Sum_probs=190.1
Q ss_pred eEEEEeEEEEEecccccccc--eeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 004929 105 SVVWKDLTVTIKGKRRYSDK--VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~--iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (723)
.++++||++.|. ++. +|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 3 ~l~i~~l~~~y~-----~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~ 74 (353)
T 1oxx_K 3 RIIVKNVSKVFK-----KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGK 74 (353)
T ss_dssp CEEEEEEEEEEG-----GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTE
T ss_pred EEEEEeEEEEEC-----CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECccccc
Confidence 378999999993 346 999999999999999999999999999999999999987 4999999986421
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHH
Q 004929 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (723)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (723)
.++.+|||+|+..++|.+||+||+.|+...+. ....+.+++++++++.+||.+..++.+ ++|||||||
T Consensus 75 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~~~~~~~------~~LSGGq~Q 147 (353)
T 1oxx_K 75 LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK-MSKEEIRKRVEEVAKILDIHHVLNHFP------RELSGAQQQ 147 (353)
T ss_dssp ESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS-CCHHHHHHHHHHHHHHTTCGGGTTSCG------GGSCHHHHH
T ss_pred ccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCchHhcCCh------hhCCHHHHH
Confidence 23579999999999999999999988653321 111224567999999999999888755 499999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004929 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||+|||||+.+|++|||||||+|||+.++.++.+.|+++++ .|+|+|+++|+. .++..+||||++|++|+++..|+++
T Consensus 148 RvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~ 226 (353)
T 1oxx_K 148 RVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPE 226 (353)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999975 499999988886 5788999999999999999999999
Q ss_pred HHHH
Q 004929 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++.+
T Consensus 227 ~l~~ 230 (353)
T 1oxx_K 227 DLYD 230 (353)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8864
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=4.6e-46 Score=406.14 Aligned_cols=217 Identities=25% Similarity=0.342 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (723)
.++++||++.|. ++.+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 11 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~ 82 (372)
T 1v43_A 11 EVKLENLTKRFG-----NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKD 82 (372)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred eEEEEEEEEEEC-----CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhh
Confidence 389999999993 357999999999999999999999999999999999999987 4999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004929 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.+|||+|+..++|++||+||+.|+...+. ....+.+++++++++.++|.+.+++.+ .+|||||||||+||||
T Consensus 83 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~~~~r~~------~~LSGGq~QRvalArA 155 (372)
T 1v43_A 83 RNISMVFQSYAVWPHMTVYENIAFPLKIKK-FPKDEIDKRVRWAAELLQIEELLNRYP------AQLSGGQRQRVAVARA 155 (372)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC--C-CCHHHHHHHHHHHHHHTTCGGGTTSCT------TTCCSSCHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCChhHhcCCh------hhCCHHHHHHHHHHHH
Confidence 579999999999999999999988643221 111224567999999999999887754 5999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004929 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|+.+|++|||||||||||+..+.++.+.|++++++ |.|+|+++|+. .++..+||||++|++|+++..|+++++..
T Consensus 156 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 156 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999764 99999988886 57889999999999999999999999864
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=6.7e-46 Score=401.74 Aligned_cols=212 Identities=24% Similarity=0.324 Sum_probs=188.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---Cc
Q 004929 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---YG 182 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---~~ 182 (723)
++++||++.|. ++ +|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++.... ++
T Consensus 2 l~~~~l~~~y~-----~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r 72 (348)
T 3d31_A 2 IEIESLSRKWK-----NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72 (348)
T ss_dssp EEEEEEEEECS-----SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHH
T ss_pred EEEEEEEEEEC-----CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhC
Confidence 68999999983 34 999999999999999999999999999999999999987 49999999886421 24
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004929 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
.+|||+|+..++|.+||+||+.|+...+... +. ++++++++.++|.+..++.+ .+|||||||||+|||||
T Consensus 73 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~---~~-~~v~~~l~~~~L~~~~~~~~------~~LSgGq~QRvalAraL 142 (348)
T 3d31_A 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK---DP-KRVLDTARDLKIEHLLDRNP------LTLSGGEQQRVALARAL 142 (348)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCCC---CH-HHHHHHHHHTTCTTTTTSCG------GGSCHHHHHHHHHHHHT
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCC---HH-HHHHHHHHHcCCchHhcCCh------hhCCHHHHHHHHHHHHH
Confidence 6999999999999999999999986543211 12 67899999999999888755 49999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004929 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
+.+|++|||||||+|||+.++.++.+.|+++++ .|+|+|+++|+. .++..+||||++|++|+++..|+++++.+
T Consensus 143 ~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~~ 217 (348)
T 3d31_A 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (348)
T ss_dssp TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999975 599999988876 57889999999999999999999998753
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-45 Score=381.15 Aligned_cols=211 Identities=24% Similarity=0.328 Sum_probs=183.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 004929 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (723)
++++||++.|. + +|+|||+.+++ |+++|+||||||||||+|+|+|+++|+ +|+|.++|++... .++
T Consensus 2 l~~~~l~~~y~-----~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 70 (240)
T 2onk_A 2 FLKVRAEKRLG-----N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERR 70 (240)
T ss_dssp CEEEEEEEEET-----T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTS
T ss_pred EEEEEEEEEeC-----C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhC
Confidence 57899999983 1 59999999999 999999999999999999999999987 4999999987532 235
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004929 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
.++|++|++.+++.+||+||+.++.... . ....+++++++++.+||.+..++.+ .+|||||||||+|||||
T Consensus 71 ~i~~v~q~~~l~~~ltv~enl~~~~~~~--~-~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGqkqRv~lAral 141 (240)
T 2onk_A 71 GIGFVPQDYALFPHLSVYRNIAYGLRNV--E-RVERDRRVREMAEKLGIAHLLDRKP------ARLSGGERQRVALARAL 141 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTTCTTS--C-HHHHHHHHHHHHHTTTCTTTTTCCG------GGSCHHHHHHHHHHHHH
T ss_pred cEEEEcCCCccCCCCcHHHHHHHHHHHc--C-CchHHHHHHHHHHHcCCHHHhcCCh------hhCCHHHHHHHHHHHHH
Confidence 6999999999999999999998753211 1 1123567899999999998887755 49999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004929 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
+.+|++|||||||+|||+.++..+++.|+++++ +|+|||+++|+. .++..+||++++|++|++++.|+++++.+
T Consensus 142 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999975 499999988886 57889999999999999999999988754
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=3.1e-45 Score=383.91 Aligned_cols=222 Identities=22% Similarity=0.324 Sum_probs=187.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCc
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYG 182 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~ 182 (723)
.++++||++.|..++...+.+|+|||+.+++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++... .++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhh
Confidence 37899999999411000146999999999999999999999999999999999999987 4999999987531 135
Q ss_pred eEEEEcCCC-ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc--hHhhhhhcCCCCCCCCCHHHHHHHHHH
Q 004929 183 SYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 183 ~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (723)
.++|++|++ .+++.+||+||+.++.....+ ..+.+++++++++.+||. +..++.+ .+|||||||||+||
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~--~~~~~~~~~~~l~~~gl~~~~~~~~~~------~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYP--DRDPVPLVKKAMEFVGLDFDSFKDRVP------FFLSGGEKRRVAIA 150 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTTCT--TSCSHHHHHHHHHHTTCCHHHHTTCCG------GGSCHHHHHHHHHH
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhcCC--HHHHHHHHHHHHHHcCcCCcccccCCh------hhCCHHHHHHHHHH
Confidence 699999995 566789999999885422111 112356789999999998 8887755 49999999999999
Q ss_pred HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHH
Q 004929 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (723)
Q Consensus 260 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (723)
|||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++. .+..+||++++|++|++++.|+++++.+.
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999877999999999874 67789999999999999999999887653
No 22
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=7e-45 Score=377.90 Aligned_cols=214 Identities=18% Similarity=0.245 Sum_probs=177.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEeCCCC--
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR--LPHSARMYGEVFVNGAKSEMP-- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~--~~~~~~~~G~I~i~G~~~~~~-- 180 (723)
.++++||++.|. ++.+|+|||+++++||+++|+||||||||||+|+|+|+ ++|+ +|+|.++|++....
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~ 74 (250)
T 2d2e_A 3 QLEIRDLWASID-----GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSP 74 (250)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCH
T ss_pred eEEEEeEEEEEC-----CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCH
Confidence 478999999993 35799999999999999999999999999999999998 5665 59999999876421
Q ss_pred ----CceEEEEcCCCccCCCCCHHHHHHHHHHh--cCCCccchHHHHHHHHHHHcCC-chHhhhhhcCCCCCCC-CCHHH
Q 004929 181 ----YGSYGFVERETTLIGSLTVREYLYYSALL--QLPGFFCQRKNVVEDAIHAMSL-SDYANKLIGGHCYMKG-LPCGE 252 (723)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~--~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~ig~~~~~~~-LSGGe 252 (723)
+..++|++|++.+++.+||+||+.+.... .......+..++++++++.+|| .+..++.++ + |||||
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~------~~LSgGq 148 (250)
T 2d2e_A 75 DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN------EGFSGGE 148 (250)
T ss_dssp HHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTT------CC----H
T ss_pred HHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc------cCCCHHH
Confidence 12489999999999999999999886532 1111111234678899999999 577877554 7 99999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhc-CCEEEEEeCCeEEEEeC
Q 004929 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLFFGE 331 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv~~G~ 331 (723)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++. .+..+ ||++++|++|++++.|+
T Consensus 149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~ 227 (250)
T 2d2e_A 149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMDGRVVATGG 227 (250)
T ss_dssp HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEETTEEEEEES
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEECCEEEEEeC
Confidence 99999999999999999999999999999999999999999777999999999874 66777 59999999999999999
Q ss_pred hh
Q 004929 332 TL 333 (723)
Q Consensus 332 ~~ 333 (723)
++
T Consensus 228 ~~ 229 (250)
T 2d2e_A 228 PE 229 (250)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=4.4e-45 Score=385.01 Aligned_cols=217 Identities=24% Similarity=0.296 Sum_probs=183.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CC--
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MP-- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~--~~-- 180 (723)
.++++||++.|. ++++|+|||+.+++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++.. ..
T Consensus 21 ~l~~~~l~~~y~-----~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~ 92 (279)
T 2ihy_A 21 LIQLDQIGRMKQ-----GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSA 92 (279)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCH
T ss_pred eEEEEeEEEEEC-----CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCH
Confidence 589999999993 357999999999999999999999999999999999999987 499999998753 11
Q ss_pred ---CceEEEEcCCCccC--CCCCHHHHHHHHHHh--cCCC-ccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHH
Q 004929 181 ---YGSYGFVERETTLI--GSLTVREYLYYSALL--QLPG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (723)
Q Consensus 181 ---~~~~~yv~Q~~~l~--~~lTV~E~l~~~~~~--~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe 252 (723)
++.++|++|++.++ +.+||+||+.++... .... ...+.+++++++++.+||.+..++.++ +|||||
T Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~------~LSgGq 166 (279)
T 2ihy_A 93 ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG------YLSTGE 166 (279)
T ss_dssp HHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGG------GSCHHH
T ss_pred HHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChh------hCCHHH
Confidence 24699999997543 356999999874211 1001 111235678999999999988877554 999999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE--EEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004929 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL--LFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tv--i~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|| |+++|+. .++.++||+|++|++|++++.|
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~-~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCG-GGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999998779999 9988886 4678899999999999999999
Q ss_pred ChhHHH
Q 004929 331 ETLACL 336 (723)
Q Consensus 331 ~~~~~~ 336 (723)
+++++.
T Consensus 246 ~~~~~~ 251 (279)
T 2ihy_A 246 AVEDIL 251 (279)
T ss_dssp EHHHHC
T ss_pred CHHHHh
Confidence 987763
No 24
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=3.7e-44 Score=372.97 Aligned_cols=209 Identities=24% Similarity=0.322 Sum_probs=180.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (723)
.++++||++.|.. ++.+|+|+|+.+++||+++|+||||||||||+|+|+|+++|+ +|+|.+ .+.+
T Consensus 4 ~l~i~~l~~~y~~----~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~--------~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA----ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV--------YQSI 68 (253)
T ss_dssp EEEEEEEEEEETT----TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE--------CSCE
T ss_pred eEEEeeEEEEeCC----CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE--------eccE
Confidence 4899999999831 357999999999999999999999999999999999999987 499982 2469
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCC---CccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004929 185 GFVERETTLIGSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+|++|++.+++.+||+||+.++...... ......+++++++++.+||.+..++.+ .+|||||||||+||||
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~qrv~lAra 142 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF------TSLSGGQRQLILIARA 142 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG------GGSCHHHHHHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh------hhCCHHHHHHHHHHHH
Confidence 9999999999999999999876422111 011123567899999999998887755 4999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004929 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
|+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|++ .++.++||++++|++|+ ++.|+++++.
T Consensus 143 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 143 IASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 99999999999999999999999999999999876 99999988886 47788999999999999 9999987763
No 25
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.9e-44 Score=381.67 Aligned_cols=216 Identities=23% Similarity=0.339 Sum_probs=183.7
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004929 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++||++.|.+ .+.+|+|||+.+++||++||+||||||||||+|+|+|+++|+ +|+|.++|+++...
T Consensus 52 ~~i~~~~vs~~y~~----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~ 124 (306)
T 3nh6_A 52 GRIEFENVHFSYAD----GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQA 124 (306)
T ss_dssp CCEEEEEEEEESST----TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHH
T ss_pred CeEEEEEEEEEcCC----CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHH
Confidence 35999999999952 357999999999999999999999999999999999999987 49999999986432
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHHH
Q 004929 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGER 253 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGer 253 (723)
++.++||+|++.+|+ .||+|||.++.. . ...++++++++.+++.+..+..+.| .....+||||||
T Consensus 125 ~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~----~---~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqr 196 (306)
T 3nh6_A 125 SLRSHIGVVPQDTVLFN-DTIADNIRYGRV----T---AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEK 196 (306)
T ss_dssp HHHHTEEEECSSCCCCS-EEHHHHHHTTST----T---CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHH
T ss_pred HHhcceEEEecCCccCc-ccHHHHHHhhcc----c---CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHH
Confidence 246999999999885 599999976421 1 1245678888889998776655422 134568999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004929 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
|||+|||||+.+|+||||||||||||+.++..|++.|+++.+ ++|+|+++|++. .+.. ||+|++|++|++++.|+++
T Consensus 197 QRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~~~~-aD~i~vl~~G~iv~~G~~~ 273 (306)
T 3nh6_A 197 QRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLS-TVVN-ADQILVIKDGCIVERGRHE 273 (306)
T ss_dssp HHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHH-HHHT-CSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChH-HHHc-CCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999864 689999888864 5655 9999999999999999999
Q ss_pred HHHH
Q 004929 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++.+
T Consensus 274 el~~ 277 (306)
T 3nh6_A 274 ALLS 277 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8865
No 26
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=6.1e-44 Score=374.23 Aligned_cols=219 Identities=20% Similarity=0.229 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCCC--
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEMP-- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~--~~~~~~~G~I~i~G~~~~~~-- 180 (723)
.++++||++.|. ++.+|+|||+.+++||+++|+||||||||||+|+|+|+. +|+ +|+|.++|++....
T Consensus 20 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~ 91 (267)
T 2zu0_C 20 MLSIKDLHVSVE-----DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSP 91 (267)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCH
T ss_pred eEEEEeEEEEEC-----CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCH
Confidence 589999999993 357999999999999999999999999999999999984 454 59999999875321
Q ss_pred ----CceEEEEcCCCccCCCCCHHHHHHHHHH-h----cCCC-ccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCC
Q 004929 181 ----YGSYGFVERETTLIGSLTVREYLYYSAL-L----QLPG-FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLP 249 (723)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~-~----~~~~-~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LS 249 (723)
++.++|++|++.+++.+||.|++.+... . ..+. ...+.+++++++++.+||. +..++.++ .+||
T Consensus 92 ~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LS 166 (267)
T 2zu0_C 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN-----VGFS 166 (267)
T ss_dssp HHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT-----TTCC
T ss_pred HHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc-----cCCC
Confidence 1248999999999999999999987542 1 1111 1112346788999999996 46665432 1599
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhc-CCEEEEEeCCeEEE
Q 004929 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLF 328 (723)
Q Consensus 250 GGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv~ 328 (723)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|++ ..+..+ ||++++|++|++++
T Consensus 167 gGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~~d~v~~l~~G~i~~ 245 (267)
T 2zu0_C 167 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVK 245 (267)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSG-GGGGTSCCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCH-HHHHhhcCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999987799999988886 456665 89999999999999
Q ss_pred EeChhHHHH
Q 004929 329 FGETLACLQ 337 (723)
Q Consensus 329 ~G~~~~~~~ 337 (723)
.|+++++..
T Consensus 246 ~g~~~~~~~ 254 (267)
T 2zu0_C 246 SGDFTLVKQ 254 (267)
T ss_dssp EECTTHHHH
T ss_pred EcCHHHHhh
Confidence 999987653
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=9e-44 Score=368.79 Aligned_cols=215 Identities=26% Similarity=0.364 Sum_probs=182.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++||++.|.+ .++.+|+|||+.+++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 7 ~~~~~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~ 80 (247)
T 2ff7_A 7 DITFRNIRFRYKP---DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNW 80 (247)
T ss_dssp EEEEEEEEEESST---TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHH
T ss_pred ceeEEEEEEEeCC---CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHH
Confidence 5899999999831 1357999999999999999999999999999999999999987 49999999886431
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHHHH
Q 004929 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERR 254 (723)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerq 254 (723)
++.++||+|++.+++ .||+||+.++. +. ..+++++++++.+++.+..++.+.| +..+.+|||||||
T Consensus 81 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~~---~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~q 152 (247)
T 2ff7_A 81 LRRQVGVVLQDNVLLN-RSIIDNISLAN----PG---MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQ 152 (247)
T ss_dssp HHHHEEEECSSCCCTT-SBHHHHHTTTC----TT---CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHH
T ss_pred HHhcEEEEeCCCcccc-ccHHHHHhccC----CC---CCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHH
Confidence 246999999998886 69999997641 11 1245678899999998887765311 2345789999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004929 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
||+|||||+.+|++|||||||+|||+.++..+++.|++++ +|+|||+++|++. .+ ..||++++|++|++++.|++++
T Consensus 153 Rv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~ 229 (247)
T 2ff7_A 153 RIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS-TV-KNADRIIVMEKGKIVEQGKHKE 229 (247)
T ss_dssp HHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG-GG-TTSSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999995 6999999999874 44 4599999999999999999988
Q ss_pred HH
Q 004929 335 CL 336 (723)
Q Consensus 335 ~~ 336 (723)
+.
T Consensus 230 l~ 231 (247)
T 2ff7_A 230 LL 231 (247)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 28
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=8.8e-44 Score=369.06 Aligned_cols=206 Identities=23% Similarity=0.314 Sum_probs=180.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++||++. .+|+|+|+.+++||+++|+||||||||||||+|+|+++| . |+|.++|++....
T Consensus 4 ~l~~~~l~~~---------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~ 70 (249)
T 2qi9_C 4 VMQLQDVAES---------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATK 70 (249)
T ss_dssp EEEEEEEEET---------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHH
T ss_pred EEEEEceEEE---------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHH
Confidence 4789999863 589999999999999999999999999999999999987 3 9999999875321
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHH
Q 004929 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (723)
++.++|++|++.+++.+||+||+.+.. .... .+++++++++.+||.+..++.+ .+|||||||||+||
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~---~~~~---~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~qrv~lA 138 (249)
T 2qi9_C 71 LALHRAYLSQQQTPPFATPVWHYLTLHQ---HDKT---RTELLNDVAGALALDDKLGRST------NQLSGGEWQRVRLA 138 (249)
T ss_dssp HHHHEEEECSCCCCCTTCBHHHHHHTTC---SSTT---CHHHHHHHHHHTTCGGGTTSBG------GGCCHHHHHHHHHH
T ss_pred HhceEEEECCCCccCCCCcHHHHHHHhh---ccCC---cHHHHHHHHHHcCChhHhcCCh------hhCCHHHHHHHHHH
Confidence 245999999999999999999997641 1111 1567899999999998887755 49999999999999
Q ss_pred HHHhhCCc-------EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004929 260 RELVMRPH-------VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 260 ~aL~~~P~-------lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
|||+.+|+ +|||||||+|||+.++..+.+.|++++++|+|||+++|++ ..+.++||++++|++|++++.|++
T Consensus 139 raL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~ 217 (249)
T 2qi9_C 139 AVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRR 217 (249)
T ss_dssp HHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEEH
T ss_pred HHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999 9999999999999999999999999987799999988876 577889999999999999999998
Q ss_pred hHHH
Q 004929 333 LACL 336 (723)
Q Consensus 333 ~~~~ 336 (723)
+++.
T Consensus 218 ~~~~ 221 (249)
T 2qi9_C 218 EEVL 221 (249)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 7763
No 29
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=5.5e-44 Score=375.29 Aligned_cols=217 Identities=23% Similarity=0.286 Sum_probs=175.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++||++.|.+. ..+.+|+|||+.+++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++...
T Consensus 16 ~l~~~~l~~~y~~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~ 90 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH--PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHY 90 (271)
T ss_dssp CEEEEEEEECCTTC--TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHH
T ss_pred eEEEEEEEEEeCCC--CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHH
Confidence 58999999988421 1257999999999999999999999999999999999999987 49999999875321
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccch-----HHHHHHHHHHHc--CCchHhhhhhcCCCCCCCCCHHH
Q 004929 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ-----RKNVVEDAIHAM--SLSDYANKLIGGHCYMKGLPCGE 252 (723)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~~~~ig~~~~~~~LSGGe 252 (723)
++.++||+|++.+++ .||+||+.++... .. ...+ ....++++++.+ ||.+..++ .+.+|||||
T Consensus 91 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~-~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~------~~~~LSgGq 161 (271)
T 2ixe_A 91 LHTQVAAVGQEPLLFG-RSFRENIAYGLTR-TP-TMEEITAVAMESGAHDFISGFPQGYDTEVGE------TGNQLSGGQ 161 (271)
T ss_dssp HHHHEEEECSSCCCCS-SBHHHHHHTTCSS-CC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCG------GGTTSCHHH
T ss_pred HhccEEEEecCCcccc-ccHHHHHhhhccc-CC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcC------CcCCCCHHH
Confidence 246999999998887 5999999874211 11 1001 112244556666 55555544 345999999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004929 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
||||+|||||+.+|+||||||||+|||+.++..+++.|+++++ +|+|||+++|++. .+. .||+|++|++|++++.|+
T Consensus 162 ~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~-~~~-~~d~v~~l~~G~i~~~g~ 239 (271)
T 2ixe_A 162 RQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS-LAE-RAHHILFLKEGSVCEQGT 239 (271)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH-HHT-TCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999974 5899999888864 554 599999999999999999
Q ss_pred hhHHHH
Q 004929 332 TLACLQ 337 (723)
Q Consensus 332 ~~~~~~ 337 (723)
++++.+
T Consensus 240 ~~~l~~ 245 (271)
T 2ixe_A 240 HLQLME 245 (271)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988754
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=7.8e-44 Score=368.47 Aligned_cols=215 Identities=21% Similarity=0.306 Sum_probs=181.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 004929 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (723)
++++||++.|. .++.+|+|||+.+++||+++|+||||||||||+|+|+|+++|++ |+|.++|++... .
T Consensus 2 l~~~~l~~~y~----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 74 (243)
T 1mv5_A 2 LSARHVDFAYD----DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA---GEITIDGQPIDNISLENW 74 (243)
T ss_dssp EEEEEEEECSS----SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSB---SCEEETTEESTTTSCSCC
T ss_pred EEEEEEEEEeC----CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEEhhhCCHHHH
Confidence 68999999883 23579999999999999999999999999999999999999874 999999987532 2
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHHHHH
Q 004929 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRR 255 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerqR 255 (723)
++.++|++|++.+++ .||+||+.++.. +. ..+++++++++.+++.+..++.+.| +..+.+||||||||
T Consensus 75 ~~~i~~v~q~~~l~~-~tv~enl~~~~~---~~---~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qr 147 (243)
T 1mv5_A 75 RSQIGFVSQDSAIMA-GTIRENLTYGLE---GD---YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQR 147 (243)
T ss_dssp TTTCCEECCSSCCCC-EEHHHHTTSCTT---SC---SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHH
T ss_pred HhhEEEEcCCCcccc-ccHHHHHhhhcc---CC---CCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHH
Confidence 346999999998887 599999976311 11 1245678899999998877664321 13457999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004929 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
|+|||||+.+|++|||||||+|||+.++..+++.|++++ +|+|||+++|++. .+ ..||++++|++|++++.|+++++
T Consensus 148 v~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~ 224 (243)
T 1mv5_A 148 LAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEKGQITGSGKHNEL 224 (243)
T ss_dssp HHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEETTEECCCSCHHHH
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999997 6999999998864 45 46999999999999999998877
Q ss_pred HH
Q 004929 336 LQ 337 (723)
Q Consensus 336 ~~ 337 (723)
..
T Consensus 225 ~~ 226 (243)
T 1mv5_A 225 VA 226 (243)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 31
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=6.8e-43 Score=365.11 Aligned_cols=209 Identities=22% Similarity=0.352 Sum_probs=180.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CCCce
Q 004929 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MPYGS 183 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~--~~~~~ 183 (723)
++++||++.|.+.. ..+.+|+|+|+.++ ||+++|+||||||||||||+|+|++ |+ +|+|.++|++.. ..++.
T Consensus 2 l~~~~l~~~y~~~~-~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~ 75 (263)
T 2pjz_A 2 IQLKNVGITLSGKG-YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIR 75 (263)
T ss_dssp EEEEEEEEEEEEET-TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTT
T ss_pred EEEEEEEEEeCCCC-ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhh
Confidence 68999999995210 11569999999999 9999999999999999999999999 86 499999998742 11456
Q ss_pred EE-EEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004929 184 YG-FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 184 ~~-yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
++ |++|++.+ .+||+||+.+..... . ..+++++++++.+||. +..++.+ .+|||||||||+||||
T Consensus 76 i~~~v~Q~~~l--~~tv~enl~~~~~~~--~---~~~~~~~~~l~~~gl~~~~~~~~~------~~LSgGqkqRv~lAra 142 (263)
T 2pjz_A 76 YSTNLPEAYEI--GVTVNDIVYLYEELK--G---LDRDLFLEMLKALKLGEEILRRKL------YKLSAGQSVLVRTSLA 142 (263)
T ss_dssp EEECCGGGSCT--TSBHHHHHHHHHHHT--C---CCHHHHHHHHHHTTCCGGGGGSBG------GGSCHHHHHHHHHHHH
T ss_pred eEEEeCCCCcc--CCcHHHHHHHhhhhc--c---hHHHHHHHHHHHcCCChhHhcCCh------hhCCHHHHHHHHHHHH
Confidence 99 99999887 899999998865432 1 2346789999999998 8887755 4999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCC-EEEEEeCCeEEEEeChhHHHH
Q 004929 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD-RICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D-~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|+.+|++|||||||+|||+.++..+++.|+++++ |||+++|++ .++.++|| ++++|++|++++.|+++++.+
T Consensus 143 L~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 143 LASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp HHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999999999999999864 999988887 46788999 999999999999999998864
No 32
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-43 Score=359.41 Aligned_cols=203 Identities=22% Similarity=0.307 Sum_probs=173.8
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 004929 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (723)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (723)
+..++++||++.|. + ++|+|||+.+++||+++|+||||||||||||+|+|+++|+ +|+|.++|++....++
T Consensus 8 ~~~l~~~~ls~~y~-----~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~ 78 (214)
T 1sgw_A 8 GSKLEIRDLSVGYD-----K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKG 78 (214)
T ss_dssp -CEEEEEEEEEESS-----S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGGGG
T ss_pred CceEEEEEEEEEeC-----C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhhhhcC
Confidence 45799999999883 3 7999999999999999999999999999999999999987 4999999987532235
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004929 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
.++|++|++.+++.+||+||+.+....... . ..+++++++++.+||.+. ++.+ .+|||||||||+|||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~--~~~~~~~~~l~~~gl~~~-~~~~------~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 79 KIFFLPEEIIVPRKISVEDYLKAVASLYGV-K--VNKNEIMDALESVEVLDL-KKKL------GELSQGTIRRVQLASTL 148 (214)
T ss_dssp GEEEECSSCCCCTTSBHHHHHHHHHHHTTC-C--CCHHHHHHHHHHTTCCCT-TSBG------GGSCHHHHHHHHHHHHT
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-c--hHHHHHHHHHHHcCCCcC-CCCh------hhCCHHHHHHHHHHHHH
Confidence 799999999999999999999887543211 1 125678999999999877 7654 49999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004929 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++. ++..+||+++++ .|+|
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKY-STKI 210 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGG-BC--
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999999999999877899999999984 678888988755 4544
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.3e-42 Score=362.73 Aligned_cols=217 Identities=24% Similarity=0.324 Sum_probs=179.9
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004929 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++||++.|.++ ..+.+|+|||+.+++||+++|+||||||||||+|+|+|++++ +|+|.++|++....
T Consensus 16 ~~l~i~~l~~~y~~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~ 89 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQ--TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRN 89 (260)
T ss_dssp CCEEEEEEEECCTTC--CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHH
T ss_pred CeEEEEEEEEEeCCC--CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHH
Confidence 358999999988421 124699999999999999999999999999999999999875 39999999875321
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHHH
Q 004929 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGER 253 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGer 253 (723)
++.++||+|++.+++ .||+||+.++. .. ..++++.++++.+++.+..+....+ +..+.+||||||
T Consensus 90 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~~---~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqk 161 (260)
T 2ghi_A 90 SIRSIIGIVPQDTILFN-ETIKYNILYGK----LD---ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGER 161 (260)
T ss_dssp HHHTTEEEECSSCCCCS-EEHHHHHHTTC----TT---CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHH
T ss_pred HHhccEEEEcCCCcccc-cCHHHHHhccC----CC---CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHH
Confidence 246999999998886 69999997631 11 1234577888888987765433211 235679999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004929 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
|||+|||||+.+|+||||||||+|||+.++..+++.|+++++ |+|||+++|++. .+ ..||++++|++|++++.|+++
T Consensus 162 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~-~~-~~~d~i~~l~~G~i~~~g~~~ 238 (260)
T 2ghi_A 162 QRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLS-TI-SSAESIILLNKGKIVEKGTHK 238 (260)
T ss_dssp HHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGG-GS-TTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999965 899999999875 44 469999999999999999998
Q ss_pred HHHH
Q 004929 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++..
T Consensus 239 ~l~~ 242 (260)
T 2ghi_A 239 DLLK 242 (260)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8754
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=4.7e-42 Score=352.05 Aligned_cols=207 Identities=21% Similarity=0.295 Sum_probs=171.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (723)
.++++||++.|.. .++++|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++| .+
T Consensus 6 ~l~~~~l~~~y~~---~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g--------~i 71 (229)
T 2pze_A 6 EVVMENVTAFWEE---GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG--------RI 71 (229)
T ss_dssp EEEEEEEEECSST---TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS--------CE
T ss_pred eEEEEEEEEEeCC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC--------EE
Confidence 5899999998842 2357999999999999999999999999999999999999987 49999998 38
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHHHHHHHHH
Q 004929 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerqRv~IA 259 (723)
+|++|++.+++. ||+||+.++. . . ...+++++++.+++.+..++...+ +..+.+|||||||||+||
T Consensus 72 ~~v~q~~~~~~~-tv~enl~~~~--~--~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lA 142 (229)
T 2pze_A 72 SFCSQFSWIMPG-TIKENIIFGV--S--Y----DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 142 (229)
T ss_dssp EEECSSCCCCSB-CHHHHHHTTS--C--C----CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHH
T ss_pred EEEecCCcccCC-CHHHHhhccC--C--c----ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHH
Confidence 999999998885 9999997632 1 0 122345667777877665543211 123579999999999999
Q ss_pred HHHhhCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004929 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 260 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~-L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|||+.+|++|||||||+|||+.++..+++. ++++. +|+|||+++|++. .+. .||++++|++|++++.|+++++.+
T Consensus 143 ral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 218 (229)
T 2pze_A 143 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HLK-KADKILILHEGSSYFYGTFSELQN 218 (229)
T ss_dssp HHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HHH-HCSEEEEEETTEEEEEECHHHHHT
T ss_pred HHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999997 45664 4889999988864 554 599999999999999999988753
No 35
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-42 Score=379.05 Aligned_cols=215 Identities=21% Similarity=0.293 Sum_probs=181.5
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004929 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++||++.|.. .++.+|+|||+++++||+++|+||||||||||||+|+|+++ + +|+|.++|+++...
T Consensus 18 ~~i~~~~l~~~y~~---~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~ 90 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE---GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLE 90 (390)
T ss_dssp CCEEEEEEEEESSS---SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHH
T ss_pred CeEEEEEEEEEecC---CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChH
Confidence 35899999999942 24579999999999999999999999999999999999986 4 49999999875421
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHHH
Q 004929 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGER 253 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGer 253 (723)
++.++||+|+..+++ +||+||+.+. .. ..+++++++++.++|.+..++.+.. .....+||||||
T Consensus 91 ~~rr~ig~v~Q~~~lf~-~tv~enl~~~------~~--~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqr 161 (390)
T 3gd7_A 91 QWRKAFGVIPQKVFIFS-GTFRKNLDPN------AA--HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHK 161 (390)
T ss_dssp HHHHTEEEESCCCCCCS-EEHHHHHCTT------CC--SCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHH
T ss_pred HHhCCEEEEcCCcccCc-cCHHHHhhhc------cc--cCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHH
Confidence 256999999999997 6999999531 11 2346788999999999998886541 011223999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004929 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
|||+|||||+.+|++|||||||||||+.++.++.+.|+++. .++|+|+++|+. +....||||++|++|+++..|+++
T Consensus 162 QRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~--e~~~~aDri~vl~~G~i~~~g~~~ 238 (390)
T 3gd7_A 162 QLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARI--EAMLECDQFLVIEENKVRQYDSIL 238 (390)
T ss_dssp HHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSS--GGGTTCSEEEEEETTEEEEESSHH
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCH--HHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999864 478999988885 345679999999999999999999
Q ss_pred HHHH
Q 004929 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++.+
T Consensus 239 el~~ 242 (390)
T 3gd7_A 239 ELYH 242 (390)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9865
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=9.2e-42 Score=351.62 Aligned_cols=205 Identities=20% Similarity=0.268 Sum_probs=167.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (723)
.++++||++.|.. .++.+|+|||+.+++||+++|+||||||||||+|+|+|+++|+ +|+|.++| .+
T Consensus 3 ~l~~~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g--------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWAR---SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG--------SV 68 (237)
T ss_dssp CEEEEEEEEESCT---TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS--------CE
T ss_pred eEEEEEEEEEeCC---CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC--------EE
Confidence 3789999999842 1357999999999999999999999999999999999999886 59999998 38
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhh-------hhcCCCCCCCCCHHHHHHHH
Q 004929 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANK-------LIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-------~ig~~~~~~~LSGGerqRv~ 257 (723)
+|++|++.+ +.+||+||+.+... .. . +..+++++.+++.+..+. .+ +..+.+|||||||||+
T Consensus 69 ~~v~Q~~~~-~~~tv~enl~~~~~--~~----~--~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~LSgGqkqRv~ 137 (237)
T 2cbz_A 69 AYVPQQAWI-QNDSLRENILFGCQ--LE----E--PYYRSVIQACALLPDLEILPSGDRTEI--GEKGVNLSGGQKQRVS 137 (237)
T ss_dssp EEECSSCCC-CSEEHHHHHHTTSC--CC----T--THHHHHHHHTTCHHHHTTSTTGGGSEE--STTSBCCCHHHHHHHH
T ss_pred EEEcCCCcC-CCcCHHHHhhCccc--cC----H--HHHHHHHHHHhhHHHHHhccccccccc--cCCCCCCCHHHHHHHH
Confidence 999999865 57899999976421 11 1 123445555555433221 11 2456799999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH---HHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004929 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK---KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~---~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|||||+.+|++|||||||+|||+.++..+++.|+ ++. +|+|||+++|++. .+ ..||++++|++|++++.|++++
T Consensus 138 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~ 214 (237)
T 2cbz_A 138 LARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMS-YL-PQVDVIIVMSGGKISEMGSYQE 214 (237)
T ss_dssp HHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCST-TG-GGSSEEEEEETTEEEEEECHHH
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChH-HH-HhCCEEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999995 443 5899999999875 44 5799999999999999999988
Q ss_pred HHH
Q 004929 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
+.+
T Consensus 215 ~~~ 217 (237)
T 2cbz_A 215 LLA 217 (237)
T ss_dssp HHH
T ss_pred Hhh
Confidence 754
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.9e-40 Score=384.09 Aligned_cols=218 Identities=23% Similarity=0.306 Sum_probs=186.0
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 004929 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (723)
..++++||++.|+++ ++++|+|+|+++++||++||+||||||||||+|+|+|+++|++ |+|.++|++...
T Consensus 340 ~~i~~~~v~~~y~~~---~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~---G~i~~~g~~~~~~~~~ 413 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGK---EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDS---GSICLDGHDVRDYKLT 413 (582)
T ss_pred CeEEEEEEEEEcCCC---CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---CEEEECCEEhhhCCHH
Confidence 358999999999521 2579999999999999999999999999999999999999975 999999987532
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCC-----CCCCCCCHHHH
Q 004929 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGER 253 (723)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGer 253 (723)
.++.++||+|++.+++. ||+||+.++.. +. ..+++++++++.+++.+..++.++|. +...+||||||
T Consensus 414 ~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~~---~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~ 486 (582)
T 3b5x_A 414 NLRRHFALVSQNVHLFND-TIANNIAYAAE---GE---YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQR 486 (582)
T ss_pred HHhcCeEEEcCCCccccc-cHHHHHhccCC---CC---CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHH
Confidence 13569999999999874 99999987421 11 23466889999999998877765332 24568999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004929 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||++|||||+.+|++|+|||||||||+.++..+.+.|+++.+ |+|+|+++|++. .+ +.||+|++|++|++++.|+++
T Consensus 487 qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b5x_A 487 QRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS-TI-EQADEILVVDEGEIIERGRHA 563 (582)
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999865 899999999874 44 479999999999999999998
Q ss_pred HHHH
Q 004929 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++.+
T Consensus 564 ~l~~ 567 (582)
T 3b5x_A 564 DLLA 567 (582)
T ss_pred HHHh
Confidence 8754
No 38
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.3e-40 Score=385.09 Aligned_cols=217 Identities=22% Similarity=0.302 Sum_probs=184.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004929 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++|+++.|++ ..+++|+|+|+++++||++||+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 338 ~~i~~~~v~~~y~~---~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~ 411 (578)
T 4a82_A 338 GRIDIDHVSFQYND---NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTG 411 (578)
T ss_dssp CCEEEEEEEECSCS---SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHH
T ss_pred CeEEEEEEEEEcCC---CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHH
Confidence 36999999999853 2357999999999999999999999999999999999999987 49999999986432
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCC-----CCCCCCCHHHH
Q 004929 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGER 253 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGer 253 (723)
++.++||+|++.+++. ||+||+.++ .+. ..++++.++++..++.+..++.+.|. +...+||||||
T Consensus 412 ~~r~~i~~v~Q~~~l~~~-tv~eni~~~----~~~---~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~ 483 (578)
T 4a82_A 412 SLRNQIGLVQQDNILFSD-TVKENILLG----RPT---ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQK 483 (578)
T ss_dssp HHHHTEEEECSSCCCCSS-BHHHHHGGG----CSS---CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHH
T ss_pred HHhhheEEEeCCCccCcc-cHHHHHhcC----CCC---CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHH
Confidence 2469999999999876 999999764 111 23456788889999887766654322 34468999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004929 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||++|||||+.+|++|+|||||||||+.++..+.+.|+++. +++|+|+++|++. .+ +.||+|++|++|++++.|+++
T Consensus 484 Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~ 560 (578)
T 4a82_A 484 QRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS-TI-THADKIVVIENGHIVETGTHR 560 (578)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG-GT-TTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999985 4789999889875 44 569999999999999999999
Q ss_pred HHHH
Q 004929 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++.+
T Consensus 561 el~~ 564 (578)
T 4a82_A 561 ELIA 564 (578)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.8e-40 Score=384.27 Aligned_cols=217 Identities=23% Similarity=0.296 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++|+++.|+++ ++++|+|+|+++++||++||+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 341 ~i~~~~v~~~y~~~---~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~ 414 (582)
T 3b60_A 341 DLEFRNVTFTYPGR---EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLAS 414 (582)
T ss_dssp CEEEEEEEECSSSS---SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHH
T ss_pred cEEEEEEEEEcCCC---CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHH
Confidence 58999999998421 257999999999999999999999999999999999999987 49999999986431
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCC-----CCCCCCCHHHHH
Q 004929 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERR 254 (723)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerq 254 (723)
++.++||+|++.+++. ||+||+.++.. +. ..+++++++++.+++.+..++.+.|. +...+|||||||
T Consensus 415 ~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~~---~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~q 487 (582)
T 3b60_A 415 LRNQVALVSQNVHLFND-TVANNIAYART---EE---YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQ 487 (582)
T ss_dssp HHHTEEEECSSCCCCSS-BHHHHHHTTTT---SC---CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHH
T ss_pred HHhhCeEEccCCcCCCC-CHHHHHhccCC---CC---CCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHH
Confidence 2469999999999874 99999976421 11 23466889999999988877654322 245789999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004929 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|++|||||+.+|++|+|||||||||+.++..+.+.|+++.+ |+|+|+++|++. .+ +.||+|++|++|++++.|++++
T Consensus 488 rl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~ 564 (582)
T 3b60_A 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS-TI-EQADEIVVVEDGIIVERGTHSE 564 (582)
T ss_dssp HHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG-GT-TTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHH-HH-HhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999975 899999999875 44 5799999999999999999988
Q ss_pred HHH
Q 004929 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
+.+
T Consensus 565 l~~ 567 (582)
T 3b60_A 565 LLA 567 (582)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 40
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.6e-40 Score=385.66 Aligned_cols=219 Identities=21% Similarity=0.304 Sum_probs=182.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 004929 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (723)
++++||++.|+++ .++++|+|+|+++++||++||+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 342 i~~~~v~~~y~~~--~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~ 416 (595)
T 2yl4_A 342 LEFKNVHFAYPAR--PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWL 416 (595)
T ss_dssp EEEEEEEEECSSC--TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHHHH
T ss_pred EEEEEEEEEeCCC--CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHHHH
Confidence 8999999999531 1246999999999999999999999999999999999999987 49999999986431
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCC-----CCCCCCCHHHHHH
Q 004929 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERRR 255 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerqR 255 (723)
++.++||+|++.+++ .||+||+.++.. ......+++++++++.+++.+..++.+.|. +.+.+||||||||
T Consensus 417 ~~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qr 491 (595)
T 2yl4_A 417 RSKIGTVSQEPILFS-CSIAENIAYGAD----DPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQR 491 (595)
T ss_dssp HHSEEEECSSCCCCS-SBHHHHHHTTSS----STTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHH
T ss_pred HhceEEEccCCcccC-CCHHHHHhhcCC----CccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHH
Confidence 246999999999987 599999987421 100123567889999999988766544222 2347899999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004929 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
++|||||+.+|++|+|||||||||+.++..+.+.|+++.+ |+|+|+++|++. .+ +.||+|++|++|++++.|+++++
T Consensus 492 v~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l 568 (595)
T 2yl4_A 492 IAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS-TI-KNANMVAVLDQGKITEYGKHEEL 568 (595)
T ss_dssp HHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECSCC-
T ss_pred HHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999976 899999999874 45 46999999999999999998876
Q ss_pred HH
Q 004929 336 LQ 337 (723)
Q Consensus 336 ~~ 337 (723)
.+
T Consensus 569 ~~ 570 (595)
T 2yl4_A 569 LS 570 (595)
T ss_dssp --
T ss_pred Hh
Confidence 43
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.7e-40 Score=384.48 Aligned_cols=217 Identities=25% Similarity=0.390 Sum_probs=183.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004929 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++|+++.|++ ..+++|+|+|+++++||++||+||||||||||+|+|+|+++|+ +|+|.++|+++...
T Consensus 340 ~~i~~~~v~~~y~~---~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~ 413 (587)
T 3qf4_A 340 GSVSFENVEFRYFE---NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLK 413 (587)
T ss_dssp CCEEEEEEEECSSS---SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHH
T ss_pred CcEEEEEEEEEcCC---CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHH
Confidence 36999999999853 2457999999999999999999999999999999999999987 49999999875321
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHHH
Q 004929 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGER 253 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGer 253 (723)
++.++||+|++.+++. ||+||+.++. +. ..++++.++++..++.+..+..+.| ++.+.+||||||
T Consensus 414 ~~r~~i~~v~Q~~~lf~~-tv~eni~~~~----~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqr 485 (587)
T 3qf4_A 414 DLRGHISAVPQETVLFSG-TIKENLKWGR----ED---ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQK 485 (587)
T ss_dssp HHHHHEEEECSSCCCCSE-EHHHHHTTTC----SS---CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHH
T ss_pred HHHhheEEECCCCcCcCc-cHHHHHhccC----CC---CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHH
Confidence 3469999999999865 9999996531 11 2345567788888887765544322 235678999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004929 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||++|||||+.+|++|+||||||+||+.++..+.+.|+++. +|+|+|+++|++. .+ ..||||++|++|++++.|+++
T Consensus 486 Qrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~-~~-~~~d~i~vl~~G~i~~~g~~~ 562 (587)
T 3qf4_A 486 QRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP-TA-LLADKILVLHEGKVAGFGTHK 562 (587)
T ss_dssp HHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH-HH-TTSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH-HH-HhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999985 5899999999874 44 589999999999999999999
Q ss_pred HHHH
Q 004929 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++.+
T Consensus 563 el~~ 566 (587)
T 3qf4_A 563 ELLE 566 (587)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8865
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-40 Score=386.26 Aligned_cols=216 Identities=23% Similarity=0.349 Sum_probs=183.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004929 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++||++.|+ .++++|+|+|+++++||++||+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 353 ~~i~~~~v~~~y~----~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~ 425 (598)
T 3qf4_B 353 GEIEFKNVWFSYD----KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRS 425 (598)
T ss_dssp CCEEEEEEECCSS----SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHH
T ss_pred CeEEEEEEEEECC----CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHH
Confidence 3699999999884 2356999999999999999999999999999999999999997 49999999986432
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHH
Q 004929 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGer 253 (723)
++.++||+|++.+++ .||+||+.++ .+. ..+++++++++.+++.+..++.+.|.+ ...+||||||
T Consensus 426 ~~r~~i~~v~Q~~~lf~-~tv~eni~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~ 497 (598)
T 3qf4_B 426 SLRSSIGIVLQDTILFS-TTVKENLKYG----NPG---ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQR 497 (598)
T ss_dssp HHHHHEEEECTTCCCCS-SBHHHHHHSS----STT---CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHH
T ss_pred HHHhceEEEeCCCcccc-ccHHHHHhcC----CCC---CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHH
Confidence 346999999999886 5999999763 111 123456788888888877776653322 2368999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004929 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||++|||||+.+|++|+||||||+||+.++..+.+.|+++. +|+|+|+++|++. .+. .||+|++|++|++++.|+++
T Consensus 498 Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~~~-~~d~i~~l~~G~i~~~g~~~ 574 (598)
T 3qf4_B 498 QLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLN-TIK-NADLIIVLRDGEIVEMGKHD 574 (598)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTT-HHH-HCSEEEEECSSSEEECSCHH
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999986 5899999999986 454 59999999999999999999
Q ss_pred HHHH
Q 004929 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++.+
T Consensus 575 ~l~~ 578 (598)
T 3qf4_B 575 ELIQ 578 (598)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.4e-39 Score=344.52 Aligned_cols=202 Identities=21% Similarity=0.317 Sum_probs=158.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (723)
.++++||++. .+.+|+|||+.+++||+++|+||||||||||||+|+|+++|+ +|+|.++| .+
T Consensus 40 ~l~~~~l~~~-------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g--------~i 101 (290)
T 2bbs_A 40 SLSFSNFSLL-------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG--------RI 101 (290)
T ss_dssp -----------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS--------CE
T ss_pred eEEEEEEEEc-------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC--------EE
Confidence 5889999874 146999999999999999999999999999999999999886 49999998 38
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHHHHHHHHH
Q 004929 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerqRv~IA 259 (723)
+|++|++.+++. ||+||+. +. .. ....++++++.+++.+..++...+ +..+.+|||||||||+||
T Consensus 102 ~~v~Q~~~l~~~-tv~enl~-~~--~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lA 171 (290)
T 2bbs_A 102 SFCSQNSWIMPG-TIKENII-GV--SY------DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 171 (290)
T ss_dssp EEECSSCCCCSS-BHHHHHH-TT--CC------CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHH
T ss_pred EEEeCCCccCcc-cHHHHhh-Cc--cc------chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHH
Confidence 999999988875 9999996 21 11 112345667778887665543211 123468999999999999
Q ss_pred HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004929 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTL-KKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 260 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L-~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|||+.+|++|||||||+|||+.++..+++.+ +++. +|+|||+++|++. .+ ..||++++|++|++++.|+++++..
T Consensus 172 raL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 172 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH-HH-HcCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999999999999999999999999974 5554 4899999988863 55 4699999999999999999988753
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=7.2e-39 Score=400.41 Aligned_cols=220 Identities=23% Similarity=0.352 Sum_probs=187.8
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004929 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++||++.|+.+ ...++|+|||++++|||.+||+||||||||||+++|.|+++|++ |+|.+||.++...
T Consensus 1075 g~I~f~nVsf~Y~~~--~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~---G~I~iDG~di~~i~~~ 1149 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPER--PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLG---GEIFIDGSEIKTLNPE 1149 (1321)
T ss_dssp CCEEEEEEEECCTTS--CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSS---SEEEETTEETTTBCHH
T ss_pred CeEEEEEEEEeCCCC--CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCC---CEEEECCEEhhhCCHH
Confidence 369999999999532 34579999999999999999999999999999999999999975 9999999987532
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHH
Q 004929 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGer 253 (723)
++++++|+|++.+|.. |++|||.|+. +. ....++.+.++++..++.+....+++|.+ ....||||||
T Consensus 1150 ~lR~~i~~V~Qdp~LF~g-TIreNI~~gl----d~-~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQr 1223 (1321)
T 4f4c_A 1150 HTRSQIAIVSQEPTLFDC-SIAENIIYGL----DP-SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQK 1223 (1321)
T ss_dssp HHHTTEEEECSSCCCCSE-EHHHHHSSSS----CT-TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHH
T ss_pred HHHhheEEECCCCEeeCc-cHHHHHhccC----CC-CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHH
Confidence 3579999999999965 9999996531 11 11246779999999999887766655433 2357999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004929 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||++|||||+++|+||+||||||+||+.+...|.+.|+++. +|+|+|+++|..+. ...||||+||++|+|+++|+++
T Consensus 1224 QriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~G~IvE~Gth~ 1300 (1321)
T 4f4c_A 1224 QRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSNGTIIEKGTHT 1300 (1321)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESSSSEEEEECHH
T ss_pred HHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998865 47899999998753 4669999999999999999999
Q ss_pred HHHH
Q 004929 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++++
T Consensus 1301 eLl~ 1304 (1321)
T 4f4c_A 1301 QLMS 1304 (1321)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.4e-36 Score=377.73 Aligned_cols=218 Identities=21% Similarity=0.274 Sum_probs=189.0
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004929 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++|+++.|++. .++++|+|+|+++++||.+||+||||||||||+++|.|+++|. +|+|.+||.+++..
T Consensus 414 g~I~~~nvsF~Y~~~--~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~ 488 (1321)
T 4f4c_A 414 GDITVENVHFTYPSR--PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLE 488 (1321)
T ss_dssp CCEEEEEEEECCSSS--TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHH
T ss_pred CcEEEEEeeeeCCCC--CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccc---cCcccCCCccchhccHH
Confidence 369999999999642 3467999999999999999999999999999999999999997 49999999986542
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHH
Q 004929 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGer 253 (723)
++.++||+|++.+|. .||+|||.|+. + ...++++.++++..++.+..+.++.|++ ....||||||
T Consensus 489 ~lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~----~---~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQk 560 (1321)
T 4f4c_A 489 FLRKNVAVVSQEPALFN-CTIEENISLGK----E---GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQK 560 (1321)
T ss_dssp HHHHHEEEECSSCCCCS-EEHHHHHHTTC----T---TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHH
T ss_pred HHhhcccccCCcceeeC-CchhHHHhhhc----c---cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHH
Confidence 347999999999985 59999998741 1 1245678999999999887777665544 3457999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004929 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||++|||||+++|+|||||||||+||+.++..+.+.|+++.+ |+|+|+++|+++ ..+.||+|++|++|+|++.|+.+
T Consensus 561 QRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~ 637 (1321)
T 4f4c_A 561 QRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHR 637 (1321)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHH
Confidence 999999999999999999999999999999999999999864 889999999985 45789999999999999999999
Q ss_pred HHHH
Q 004929 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
|+.+
T Consensus 638 eL~~ 641 (1321)
T 4f4c_A 638 ALMA 641 (1321)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 9864
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=5.2e-37 Score=382.81 Aligned_cols=218 Identities=22% Similarity=0.291 Sum_probs=183.0
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004929 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++||++.|+++ ...++|+|||+++++||++||+||||||||||+++|+|+++|+ +|+|.++|.++...
T Consensus 386 g~i~~~~v~~~y~~~--~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~ 460 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSR--KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVR 460 (1284)
T ss_dssp CCEEEEEEEECCSST--TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHH
T ss_pred CeEEEEEEEEEcCCC--CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEHHhCCHH
Confidence 369999999999532 2357999999999999999999999999999999999999987 49999999985422
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCC-----CCCCCCCHHHH
Q 004929 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGER 253 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGer 253 (723)
++.++||+|++.+++. ||+||+.++. +. ..++.+.++++..++.+..+++..|. +...+||||||
T Consensus 461 ~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~----~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~ 532 (1284)
T 3g5u_A 461 YLREIIGVVSQEPVLFAT-TIAENIRYGR----ED---VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQK 532 (1284)
T ss_dssp HHHHHEEEECSSCCCCSS-CHHHHHHHHC----SS---CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHH
T ss_pred HHHhheEEEcCCCccCCc-cHHHHHhcCC----CC---CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHH
Confidence 2469999999999875 9999998752 11 13456777888888776655544322 34568999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004929 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||++|||||+.+|+|||||||||+||+.++..+.+.|+++. +|+|+|+++|+.. .+. .||+|++|++|++++.|+.+
T Consensus 533 QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~i~-~~d~i~vl~~G~i~~~g~~~ 609 (1284)
T 3g5u_A 533 QRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLS-TVR-NADVIAGFDGGVIVEQGNHD 609 (1284)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHH-HHT-TCSEEEECSSSCCCCEECHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998875 5899999888864 554 49999999999999999999
Q ss_pred HHHH
Q 004929 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++.+
T Consensus 610 ~l~~ 613 (1284)
T 3g5u_A 610 ELMR 613 (1284)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=7.2e-37 Score=381.53 Aligned_cols=220 Identities=22% Similarity=0.297 Sum_probs=182.8
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004929 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++||++.|+++ ...++|+|||+++++||++||+||||||||||+++|+|+++|+ +|+|.++|+++...
T Consensus 1029 g~i~~~~v~~~y~~~--~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~ 1103 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTR--PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQ 1103 (1284)
T ss_dssp CCEEEEEEEBCCSCG--GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHH
T ss_pred CcEEEEEEEEECCCC--CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHH
Confidence 369999999999532 2346999999999999999999999999999999999999987 49999999876432
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCC-----CCCCCCCHHHH
Q 004929 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGER 253 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGer 253 (723)
++.++||+|++.+++ .||+||+.++. +.. ...++.+.+.++..++.+..++.+.|. +....||||||
T Consensus 1104 ~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~----~~~-~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~ 1177 (1284)
T 3g5u_A 1104 WLRAQLGIVSQEPILFD-CSIAENIAYGD----NSR-VVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQK 1177 (1284)
T ss_dssp HHTTSCEEEESSCCCCS-SBHHHHHTCCC----SSC-CCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHH
T ss_pred HHHhceEEECCCCcccc-ccHHHHHhccC----CCC-CCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHH
Confidence 356999999998874 69999996532 110 113455777888888877666554322 23468999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004929 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
|||+|||||+.+|+||||||||+|||+.++..+.+.|+++. +|+|+|+++|+.. .+ ..||||++|++|++++.|+++
T Consensus 1178 Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~-~i-~~~dri~vl~~G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1178 QRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLS-TI-QNADLIVVIQNGKVKEHGTHQ 1254 (1284)
T ss_dssp HHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTT-GG-GSCSEEEEEETBEEEEEECHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998854 5899999899885 45 559999999999999999999
Q ss_pred HHHH
Q 004929 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++.+
T Consensus 1255 ~l~~ 1258 (1284)
T 3g5u_A 1255 QLLA 1258 (1284)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8865
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.5e-36 Score=344.47 Aligned_cols=206 Identities=19% Similarity=0.200 Sum_probs=176.1
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 004929 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (723)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (723)
...++++|+++.|. ...|+++|+.+++||++||+||||||||||+|+|+|+++|+. |+|.++ .
T Consensus 285 ~~~l~~~~l~~~~~------~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~---G~i~~~--------~ 347 (538)
T 1yqt_A 285 ETLVTYPRLVKDYG------SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE---GKIEWD--------L 347 (538)
T ss_dssp CEEEEECCEEEEET------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSB---CCCCCC--------C
T ss_pred CeEEEEeeEEEEEC------CEEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEEC--------c
Confidence 34689999998873 246899999999999999999999999999999999999874 998751 3
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004929 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
.++|++|+....+.+||.|++........ ...++++++++.+++.+..++.++ .|||||||||+|||+|
T Consensus 348 ~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~------~LSGGe~qrv~lAraL 416 (538)
T 1yqt_A 348 TVAYKPQYIKADYEGTVYELLSKIDASKL-----NSNFYKTELLKPLGIIDLYDREVN------ELSGGELQRVAIAATL 416 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHHH-----TCHHHHHHTTTTTTCGGGTTSBGG------GCCHHHHHHHHHHHHH
T ss_pred eEEEEecCCcCCCCCcHHHHHHhhhccCC-----CHHHHHHHHHHHcCChhhhcCChh------hCCHHHHHHHHHHHHH
Confidence 59999999887788999998865311110 123567889999999887777554 9999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeC--CeEEEEeChhHHHH
Q 004929 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSN--GNTLFFGETLACLQ 337 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~--G~iv~~G~~~~~~~ 337 (723)
+.+|++|||||||+|||+.++..++++|++++ +.|.|||+++|+. .++..+||||++|++ |+++..|+++++.+
T Consensus 417 ~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 417 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp TSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999999999999999999999999997 4699999988775 688899999999986 88999999988765
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=4.7e-36 Score=347.07 Aligned_cols=205 Identities=20% Similarity=0.201 Sum_probs=176.5
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 004929 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (723)
..++++|+++.|. ...|+++|+.+++||++||+||||||||||||+|+|+++|++ |+|.++ ..
T Consensus 356 ~~l~~~~l~~~~~------~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~---G~I~~~--------~~ 418 (607)
T 3bk7_A 356 TLVEYPRLVKDYG------SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE---GKVEWD--------LT 418 (607)
T ss_dssp EEEEECCEEEECS------SCEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSB---SCCCCC--------CC
T ss_pred eEEEEeceEEEec------ceEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEEe--------eE
Confidence 4689999998873 246899999999999999999999999999999999999874 988751 35
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 004929 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (723)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~ 263 (723)
++|++|+..+.+.+||.|++........ ...++++++++.++|.+..++.++ +|||||||||+|||||+
T Consensus 419 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~------~LSGGe~QRv~iAraL~ 487 (607)
T 3bk7_A 419 VAYKPQYIKAEYEGTVYELLSKIDSSKL-----NSNFYKTELLKPLGIIDLYDRNVE------DLSGGELQRVAIAATLL 487 (607)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHHHHHH-----HCHHHHHHTHHHHTCTTTTTSBGG------GCCHHHHHHHHHHHHHT
T ss_pred EEEEecCccCCCCCcHHHHHHhhhccCC-----CHHHHHHHHHHHcCCchHhcCChh------hCCHHHHHHHHHHHHHH
Confidence 9999999888788999998865311100 123567899999999888877554 99999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeC--CeEEEEeChhHHHH
Q 004929 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSN--GNTLFFGETLACLQ 337 (723)
Q Consensus 264 ~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~--G~iv~~G~~~~~~~ 337 (723)
.+|++|||||||+|||+.++..++++|++++ +.|.|||+++|+. .++..+||||++|++ |+++..|+++++.+
T Consensus 488 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 488 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred hCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9999999999999999999999999999997 4689999988775 588899999999986 88999999988765
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.2e-35 Score=339.30 Aligned_cols=207 Identities=17% Similarity=0.244 Sum_probs=173.5
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 004929 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (723)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (723)
...++++|+++.+. ...|+++|+.+++||+++|+||||||||||+|+|+|+++|++ |+|.++| .
T Consensus 267 ~~~l~~~~l~~~~~------~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~~-------~ 330 (538)
T 3ozx_A 267 KTKMKWTKIIKKLG------DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADE---GSVTPEK-------Q 330 (538)
T ss_dssp CEEEEECCEEEEET------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSB---CCEESSC-------C
T ss_pred cceEEEcceEEEEC------CEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC-------e
Confidence 34689999998873 246888899999999999999999999999999999999974 9998765 3
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004929 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
.++|++|+......+||.|++.+... .. .......++++++.++|.+..++.+ .+|||||||||+|||||
T Consensus 331 ~i~~~~q~~~~~~~~tv~~~l~~~~~-~~---~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSGGq~QRv~iAraL 400 (538)
T 3ozx_A 331 ILSYKPQRIFPNYDGTVQQYLENASK-DA---LSTSSWFFEEVTKRLNLHRLLESNV------NDLSGGELQKLYIAATL 400 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHCS-ST---TCTTSHHHHHTTTTTTGGGCTTSBG------GGCCHHHHHHHHHHHHH
T ss_pred eeEeechhcccccCCCHHHHHHHhhh-hc---cchhHHHHHHHHHHcCCHHHhcCCh------hhCCHHHHHHHHHHHHH
Confidence 58999999777778999999976311 11 1112345788999999988877755 49999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeC--CeEEEEeChhHHH
Q 004929 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSN--GNTLFFGETLACL 336 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~--G~iv~~G~~~~~~ 336 (723)
+.+|+||||||||+|||+.++..++++|+++++ .|.|||+++|+. .++..+||||++|++ |+....+++.++.
T Consensus 401 ~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 401 AKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 999999999999999999999999999999985 589999987775 688899999999986 6677777765543
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-34 Score=333.83 Aligned_cols=203 Identities=19% Similarity=0.248 Sum_probs=166.9
Q ss_pred EeEEEEEecccccccceeeceeeEEeCC-----cEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 004929 109 KDLTVTIKGKRRYSDKVVKSSNGYALPG-----TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (723)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~v~~G-----e~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (723)
+++++.|+. .+.+++++|+.+.+| |+++|+||||||||||+|+|+|+++|++ |+. .....
T Consensus 350 ~~~~~~y~~----~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~---G~~--------~~~~~ 414 (608)
T 3j16_B 350 ASRAFSYPS----LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDE---GQD--------IPKLN 414 (608)
T ss_dssp SSSCCEECC----EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSB---CCC--------CCSCC
T ss_pred cceeEEecC----cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCC---CcC--------ccCCc
Confidence 445555532 235788999999888 7899999999999999999999999874 752 12246
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 004929 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (723)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~ 263 (723)
++|++|+.......||+|++... .+ .. ......++++++.++|.+.+++.+ .+|||||||||+|||||+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~--~~--~~-~~~~~~~~~~l~~l~l~~~~~~~~------~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKK--IR--GQ-FLNPQFQTDVVKPLRIDDIIDQEV------QHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHH--CS--ST-TTSHHHHHHTHHHHTSTTTSSSBS------SSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHH--hh--cc-cccHHHHHHHHHHcCChhhhcCCh------hhCCHHHHHHHHHHHHHH
Confidence 89999997766678999987532 11 11 112356788999999998877654 599999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeC--CeEEEEeChhHHHHH
Q 004929 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSN--GNTLFFGETLACLQH 338 (723)
Q Consensus 264 ~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~--G~iv~~G~~~~~~~~ 338 (723)
.+|+||||||||+|||+.++..++++|++++ +.|.|||+++|+. .++..+||||++|++ |+++..|+|+++++-
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999999996 5699999988775 688899999999986 999999999988753
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.5e-33 Score=333.94 Aligned_cols=200 Identities=21% Similarity=0.304 Sum_probs=166.8
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 004929 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (723)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (723)
+..+...|+++.|. ++.+|+|+|+.+++||+++|+||||||||||||+|+| |+| +|.+... ..
T Consensus 433 ~~~L~~~~ls~~yg-----~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~-~~ 495 (986)
T 2iw3_A 433 GEDLCNCEFSLAYG-----AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE-EC 495 (986)
T ss_dssp SCEEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT-TS
T ss_pred cceeEEeeEEEEEC-----CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc-ce
Confidence 34677779999883 4579999999999999999999999999999999995 222 3433211 12
Q ss_pred eEEEEcCCC-ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCCHHHHHHHHHHH
Q 004929 183 SYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIAR 260 (723)
Q Consensus 183 ~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (723)
.++|++|+. .+++.+||.|++.+ .... . +++++++++.+||. +..++.++ +|||||||||+|||
T Consensus 496 ~~~~v~q~~~~~~~~ltv~e~l~~----~~~~---~-~~~v~~~L~~lgL~~~~~~~~~~------~LSGGqkQRvaLAr 561 (986)
T 2iw3_A 496 RTVYVEHDIDGTHSDTSVLDFVFE----SGVG---T-KEAIKDKLIEFGFTDEMIAMPIS------ALSGGWKMKLALAR 561 (986)
T ss_dssp CEEETTCCCCCCCTTSBHHHHHHT----TCSS---C-HHHHHHHHHHTTCCHHHHHSBGG------GCCHHHHHHHHHHH
T ss_pred eEEEEcccccccccCCcHHHHHHH----hhcC---H-HHHHHHHHHHcCCChhhhcCCcc------cCCHHHHHHHHHHH
Confidence 478999874 67889999999965 1111 1 56789999999994 67777665 99999999999999
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEE-EEeChhHHHH
Q 004929 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLACLQ 337 (723)
Q Consensus 261 aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~~~ 337 (723)
+|+.+|+||||||||+|||+.++..+.+.|++ .|+|||+++|+. .++.++||+|++|++|+++ +.|+++++..
T Consensus 562 AL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl-~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 562 AVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDS-VFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCH-HHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCH-HHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999999999999999999999999998 589999987775 6888999999999999997 6899988764
No 53
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=4.7e-34 Score=335.79 Aligned_cols=208 Identities=19% Similarity=0.223 Sum_probs=139.9
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHH---------------------HHHHcCCCCCCC----ceeEEEECCEe
Q 004929 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLL---------------------RAIAGRLPHSAR----MYGEVFVNGAK 176 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL---------------------~~L~G~~~~~~~----~~G~I~i~G~~ 176 (723)
.+.+|+|||+++++||++||+||||||||||+ +++.|+..|+.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45799999999999999999999999999998 888888877521 13667777754
Q ss_pred CCC-CCceEEEEcCCCc-------------------cCCCCCHHHHHHHHHHhcCCCccch-HH------HHHHHHHHHc
Q 004929 177 SEM-PYGSYGFVERETT-------------------LIGSLTVREYLYYSALLQLPGFFCQ-RK------NVVEDAIHAM 229 (723)
Q Consensus 177 ~~~-~~~~~~yv~Q~~~-------------------l~~~lTV~E~l~~~~~~~~~~~~~~-~~------~~v~~~l~~l 229 (723)
... ....+++++|... .++.+||.||+.+...+........ .+ ....++++.+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 321 2233455554332 3467899999977432221110000 00 0112458888
Q ss_pred CCchH-hhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeC
Q 004929 230 SLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMRPH--VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 306 (723)
Q Consensus 230 gL~~~-~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~--lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~ 306 (723)
||.+. .++.+ .+|||||||||+|||||+.+|+ +|||||||+|||+.++..++++|++++++|.|||+++|+
T Consensus 190 gL~~~~~~~~~------~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 190 GLDYLTLSRSA------GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TCTTCCTTCBG------GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CCchhhhcCCc------ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 98764 56644 4999999999999999999998 999999999999999999999999999889999998888
Q ss_pred ChHHHHhcCCEEEEE------eCCeEEEEeChhHHHH
Q 004929 307 SSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (723)
Q Consensus 307 ~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (723)
.. .+ ..||+|++| ++|++++.|+++++.+
T Consensus 264 ~~-~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 264 ED-TM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp HH-HH-HHCSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred HH-HH-hhCCEEEEecccccccCCEEEEecCHHHHhc
Confidence 63 44 569999999 8999999999998753
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3e-34 Score=332.05 Aligned_cols=192 Identities=23% Similarity=0.245 Sum_probs=156.4
Q ss_pred EeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE---------EECCEeCCC
Q 004929 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV---------FVNGAKSEM 179 (723)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I---------~i~G~~~~~ 179 (723)
+||++.|.+ ...+|+|+| .+++||+++|+||||||||||||+|+|+++|+. |++ .++|.+...
T Consensus 95 ~~ls~~yg~----~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~---G~~~~~~~~~~~~~~G~~~~~ 166 (607)
T 3bk7_A 95 EDCVHRYGV----NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNL---CEDNDSWDNVIRAFRGNELQN 166 (607)
T ss_dssp GSEEEECST----TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCT---TTTCCCHHHHHHHTTTSTHHH
T ss_pred CCeEEEECC----CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCC---CccccccchhhheeCCEehhh
Confidence 788888731 124899999 999999999999999999999999999998875 875 355643210
Q ss_pred -------CCceEEEEcCCCccCC---CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCC
Q 004929 180 -------PYGSYGFVERETTLIG---SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249 (723)
Q Consensus 180 -------~~~~~~yv~Q~~~l~~---~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LS 249 (723)
....+++++|.....+ ..||.|++.. . +..++++++++.+||.+..++.++ +||
T Consensus 167 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~----~------~~~~~~~~~L~~lgL~~~~~~~~~------~LS 230 (607)
T 3bk7_A 167 YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK----V------DEVGKFEEVVKELELENVLDRELH------QLS 230 (607)
T ss_dssp HHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHH----T------CCSSCHHHHHHHTTCTTGGGSBGG------GCC
T ss_pred hhhhhhhhhcceEEeechhhhchhhccccHHHHhhh----h------HHHHHHHHHHHHcCCCchhCCChh------hCC
Confidence 1234788888643322 2399999853 1 112347889999999988887654 999
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 004929 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (723)
Q Consensus 250 GGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (723)
|||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|.|||+++|+. ..+..+||+|++|+++.
T Consensus 231 GGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl-~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 231 GGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL-AVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEESCT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecCh-HHHHhhCCEEEEECCCc
Confidence 9999999999999999999999999999999999999999999988899999988875 57888999999998653
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.7e-34 Score=328.79 Aligned_cols=195 Identities=23% Similarity=0.214 Sum_probs=156.6
Q ss_pred EEE-EeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE---------EECCE
Q 004929 106 VVW-KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV---------FVNGA 175 (723)
Q Consensus 106 l~~-~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I---------~i~G~ 175 (723)
..+ +||++.|.+ ...+|+||| .+++||+++|+||||||||||+|+|+|+++|+. |++ .++|.
T Consensus 21 ~~~~~~ls~~yg~----~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~---G~~~~~~~~~~~~~~g~ 92 (538)
T 1yqt_A 21 EQLEEDCVHRYGV----NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNL---CGDNDSWDGVIRAFRGN 92 (538)
T ss_dssp ---CCCEEEECST----TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCT---TTTCCSHHHHHHHTTTS
T ss_pred hhHhcCcEEEECC----ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CccCcchhhhHHhhCCc
Confidence 345 589988842 124899999 999999999999999999999999999998875 775 35664
Q ss_pred eCC-------CCCceEEEEcCCCccCCC---CCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCC
Q 004929 176 KSE-------MPYGSYGFVERETTLIGS---LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245 (723)
Q Consensus 176 ~~~-------~~~~~~~yv~Q~~~l~~~---lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~ 245 (723)
+.. .....+++++|+....+. .|+.|++... +..++++++++.+||.+..++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~----------~~~~~~~~~l~~lgl~~~~~~~~------ 156 (538)
T 1yqt_A 93 ELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA----------DETGKLEEVVKALELENVLEREI------ 156 (538)
T ss_dssp THHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH----------CSSSCHHHHHHHTTCTTTTTSBG------
T ss_pred cHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh----------hHHHHHHHHHHHcCCChhhhCCh------
Confidence 321 112357888887544332 3899988531 11234788999999988777755
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 004929 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (723)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (723)
.+|||||||||+||+||+.+|+||||||||++||+.++..+++.|++++++|+|||+++|+. .++..+||+|++|++|.
T Consensus 157 ~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~-~~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 157 QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL-AVLDYLSDIIHVVYGEP 235 (538)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEET
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCcc
Confidence 49999999999999999999999999999999999999999999999988899999988875 58889999999998653
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.9e-33 Score=333.49 Aligned_cols=206 Identities=20% Similarity=0.297 Sum_probs=161.7
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 004929 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (723)
..++++|+++.|++ ..+++|+|+|+.+++||+++|+||||||||||+|+|+|+++|+ +|+|.++|. ..
T Consensus 670 ~mL~v~nLs~~Y~g---~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~---sG~I~~~~~------~~ 737 (986)
T 2iw3_A 670 AIVKVTNMEFQYPG---TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHEN------CR 737 (986)
T ss_dssp EEEEEEEEEECCTT---CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS---EEEEEECTT------CC
T ss_pred ceEEEEeeEEEeCC---CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEcCc------cc
Confidence 46899999998842 1257999999999999999999999999999999999999987 499999863 24
Q ss_pred EEEEcCCCcc----CCCCCHHHHHHHHHHhc------------C------------------------------------
Q 004929 184 YGFVERETTL----IGSLTVREYLYYSALLQ------------L------------------------------------ 211 (723)
Q Consensus 184 ~~yv~Q~~~l----~~~lTV~E~l~~~~~~~------------~------------------------------------ 211 (723)
++|++|+... ....|+.|++.+..... +
T Consensus 738 I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~ 817 (986)
T 2iw3_A 738 IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY 817 (986)
T ss_dssp EEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEE
T ss_pred eEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchh
Confidence 8888887521 12457777765421100 0
Q ss_pred ----------------------------------------------------CCccchHHHHHHHHHHHcCCch-H-hhh
Q 004929 212 ----------------------------------------------------PGFFCQRKNVVEDAIHAMSLSD-Y-ANK 237 (723)
Q Consensus 212 ----------------------------------------------------~~~~~~~~~~v~~~l~~lgL~~-~-~~~ 237 (723)
.......+++++++++.+||.+ . .++
T Consensus 818 e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~ 897 (986)
T 2iw3_A 818 ECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHS 897 (986)
T ss_dssp EEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHS
T ss_pred hhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCC
Confidence 0000011356888999999975 3 455
Q ss_pred hhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCE
Q 004929 238 LIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (723)
Q Consensus 238 ~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (723)
.+ .+|||||||||+|||+|+.+|+||||||||+|||+.+...+++.|+++ +.|||+++|+. +.+.++||+
T Consensus 898 ~~------~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~-e~v~~l~Dr 967 (986)
T 2iw3_A 898 RI------RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSA-EFTKNLTEE 967 (986)
T ss_dssp CG------GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCH-HHHTTTCCE
T ss_pred Cc------cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCH-HHHHHhCCE
Confidence 44 499999999999999999999999999999999999999999888765 56999987775 578899999
Q ss_pred EEEEeCCeEEEEeC
Q 004929 318 ICLLSNGNTLFFGE 331 (723)
Q Consensus 318 v~vL~~G~iv~~G~ 331 (723)
+++|++|+++..|+
T Consensus 968 VivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 968 VWAVKDGRMTPSGH 981 (986)
T ss_dssp EECCBTTBCCC---
T ss_pred EEEEECCEEEEeCC
Confidence 99999999988774
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.98 E-value=3.4e-32 Score=320.04 Aligned_cols=195 Identities=21% Similarity=0.236 Sum_probs=147.7
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHH----------------------cCCCCCCCceeEEEECCEeCCCC
Q 004929 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA----------------------GRLPHSARMYGEVFVNGAKSEMP 180 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~----------------------G~~~~~~~~~G~I~i~G~~~~~~ 180 (723)
..+|+|||++|++||++||+||||||||||+++|+ |+.++ .|.|.++|.+....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~----~~~i~~~~~~~~~~ 410 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL----DKVIDIDQSPIGRT 410 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC----SEEEECCSSCSCSS
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc----CceeEeccccCCCC
Confidence 35899999999999999999999999999998764 22222 36777777653210
Q ss_pred ----------------------------------------------CceEEEEcCCCccCC-------------------
Q 004929 181 ----------------------------------------------YGSYGFVERETTLIG------------------- 195 (723)
Q Consensus 181 ----------------------------------------------~~~~~yv~Q~~~l~~------------------- 195 (723)
....|++.|+..+++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (670)
T 3ux8_A 411 PRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETL 490 (670)
T ss_dssp TTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHH
T ss_pred CCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhh
Confidence 001233333322222
Q ss_pred -------------CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004929 196 -------------SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 196 -------------~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
.+||.||+.+... ....+++.+.++.++|.. ..++ ++.+|||||||||+||||
T Consensus 491 ~~~~~~~~~~~~~~ltv~e~l~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~------~~~~LSgG~~qrv~iAra 557 (670)
T 3ux8_A 491 EVTYKGKNIAEVLDMTVEDALDFFAS-------IPKIKRKLETLYDVGLGYMKLGQ------PATTLSGGEAQRVKLAAE 557 (670)
T ss_dssp TCCBTTBCHHHHHTSBHHHHHHHTTT-------CHHHHHHHHHHHHTTCTTSBTTC------CGGGCCHHHHHHHHHHHH
T ss_pred heeecCCCHHHHhhCCHHHHHHHHHH-------hhhHHHHHHHHHHcCCchhhccC------CchhCCHHHHHHHHHHHH
Confidence 4789999876321 123345677888999864 3344 455999999999999999
Q ss_pred HhhCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeCh
Q 004929 262 LVMRP---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGET 332 (723)
Q Consensus 262 L~~~P---~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~ 332 (723)
|+.+| +||||||||+|||+.++..++++|++++++|+|||+++|++. .+ ..||||++| ++|++++.|++
T Consensus 558 L~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~i~~l~~~~g~~~G~i~~~g~~ 635 (670)
T 3ux8_A 558 LHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-VI-KTADYIIDLGPEGGDRGGQIVAVGTP 635 (670)
T ss_dssp HHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSGGGCCEEEEEECH
T ss_pred HhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HH-HhCCEEEEecCCcCCCCCEEEEecCH
Confidence 99987 599999999999999999999999999988999999888864 44 679999999 89999999999
Q ss_pred hHHH
Q 004929 333 LACL 336 (723)
Q Consensus 333 ~~~~ 336 (723)
+++.
T Consensus 636 ~~~~ 639 (670)
T 3ux8_A 636 EEVA 639 (670)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9874
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.6e-31 Score=307.00 Aligned_cols=187 Identities=19% Similarity=0.179 Sum_probs=143.4
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCCC-------CCceEE
Q 004929 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSEM-------PYGSYG 185 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~-----------i~G~~~~~-------~~~~~~ 185 (723)
..|++++ .+++||++||+||||||||||||+|+|+++|+. |+|. +.|..... ......
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~---G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 167 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAI 167 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCT---TTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCC---ceEecccchhhhhheecChhhhhhhhHHHHHhhhhh
Confidence 4677777 589999999999999999999999999999975 8872 33321100 000112
Q ss_pred EEcCCCcc------CCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHH
Q 004929 186 FVERETTL------IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 186 yv~Q~~~l------~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (723)
+.+|.... -+..++.+++... . ....++++++++.+||.+..++.++ +|||||||||+||
T Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~~l~~~----~----~~~~~~~~~~l~~~gl~~~~~~~~~------~LSgGe~Qrv~iA 233 (608)
T 3j16_B 168 IKPQYVDNIPRAIKGPVQKVGELLKLR----M----EKSPEDVKRYIKILQLENVLKRDIE------KLSGGELQRFAIG 233 (608)
T ss_dssp EECCCTTTHHHHCSSSSSHHHHHHHHH----C----CSCHHHHHHHHHHHTCTGGGGSCTT------TCCHHHHHHHHHH
T ss_pred hchhhhhhhhhhhcchhhHHHHHHhhh----h----hhHHHHHHHHHHHcCCcchhCCChH------HCCHHHHHHHHHH
Confidence 33332111 1223566655321 1 1134678999999999988887654 9999999999999
Q ss_pred HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 004929 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (723)
Q Consensus 260 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (723)
+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+. .++..+||+|++|++|..++.
T Consensus 234 raL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl-~~~~~~~drv~vl~~~~~~~~ 302 (608)
T 3j16_B 234 MSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL-SVLDYLSDFVCIIYGVPSVYG 302 (608)
T ss_dssp HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCH-HHHHHHCSEEEEEESCTTTEE
T ss_pred HHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCccccc
Confidence 999999999999999999999999999999999998899999987765 688999999999998765553
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=3.5e-31 Score=302.49 Aligned_cols=172 Identities=18% Similarity=0.195 Sum_probs=137.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE-----------EECCEeCC-------CCCceEEEEcCC----C
Q 004929 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV-----------FVNGAKSE-------MPYGSYGFVERE----T 191 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I-----------~i~G~~~~-------~~~~~~~yv~Q~----~ 191 (723)
++||++||+||||||||||+|+|+|+++|+. |+| .++|++.. .....+..+.|. +
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~---G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNF---GDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCCT---TCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---CccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 3899999999999999999999999999875 888 56665431 011123444443 2
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 004929 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFI 271 (723)
Q Consensus 192 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlL 271 (723)
.++ ..|++|++... ..+++++++++.+|+.+..++.++ +|||||||||+|||||+.+|+||||
T Consensus 100 ~~~-~~~v~~~l~~~----------~~~~~~~~~l~~l~l~~~~~~~~~------~LSgGe~Qrv~iA~aL~~~p~illl 162 (538)
T 3ozx_A 100 KFL-KGTVNEILTKI----------DERGKKDEVKELLNMTNLWNKDAN------ILSGGGLQRLLVAASLLREADVYIF 162 (538)
T ss_dssp TTC-CSBHHHHHHHH----------CCSSCHHHHHHHTTCGGGTTSBGG------GCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred hhc-cCcHHHHhhcc----------hhHHHHHHHHHHcCCchhhcCChh------hCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 222 34888876321 112347789999999988887654 9999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 004929 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (723)
Q Consensus 272 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (723)
||||++||+.++..+.+.|+++++ |+|||+++|+. .++..+||+|++|++|..+
T Consensus 163 DEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl-~~~~~~~d~i~vl~~~~~~ 216 (538)
T 3ozx_A 163 DQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDL-IVLDYLTDLIHIIYGESSV 216 (538)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCH-HHHHHHCSEEEEEEEETTT
T ss_pred ECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeCh-HHHHhhCCEEEEecCCccc
Confidence 999999999999999999999976 89999987776 6889999999999876543
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=4.2e-29 Score=298.47 Aligned_cols=201 Identities=19% Similarity=0.220 Sum_probs=151.6
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHH---------HHHHcCCCCCC---Cce------eEEEECCEeCCC-----
Q 004929 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLL---------RAIAGRLPHSA---RMY------GEVFVNGAKSEM----- 179 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL---------~~L~G~~~~~~---~~~------G~I~i~G~~~~~----- 179 (723)
...|+|||+.+++|++++|+|+||||||||+ +.+.|...+.+ ..+ +.+.+++.++..
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 3579999999999999999999999999997 45555433221 012 234444432210
Q ss_pred -----------------------------------------CCceEEEEcCCCccCC-----------------------
Q 004929 180 -----------------------------------------PYGSYGFVERETTLIG----------------------- 195 (723)
Q Consensus 180 -----------------------------------------~~~~~~yv~Q~~~l~~----------------------- 195 (723)
..+..|++.++..++|
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 0112466766665554
Q ss_pred ---------CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 004929 196 ---------SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRP 266 (723)
Q Consensus 196 ---------~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P 266 (723)
.+||.|++.|... .....++.++|+.+||.... . +..+.+|||||||||+|||||+.+|
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~-------~~~~~~~~~~L~~vGL~~~~---l--gq~~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKN-------IPSIKRTLQVLHDVGLGYVK---L--GQPATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTT-------CHHHHHHHHHHHHTTGGGSB---T--TCCSTTCCHHHHHHHHHHHHHTSCC
T ss_pred ccCCHHHHhhCCHHHHHHHHhc-------chhHHHHHHHHHHcCCchhh---c--cCCccCCCHHHHHHHHHHHHHhhCC
Confidence 3678888866321 12345678899999996532 1 2345699999999999999999875
Q ss_pred ---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChhHHHH
Q 004929 267 ---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (723)
Q Consensus 267 ---~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (723)
+||||||||+|||+.++..+++.|++++++|.|||+++|+. +.+ ..||+|++| ++|++++.|+++++.+
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL-~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL-DVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 79999999999999999999999999998899999988876 455 569999999 8999999999999864
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.96 E-value=1.6e-29 Score=300.15 Aligned_cols=209 Identities=20% Similarity=0.236 Sum_probs=157.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHH-cCC---------CCCC--Ccee---
Q 004929 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA-GRL---------PHSA--RMYG--- 168 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~-G~~---------~~~~--~~~G--- 168 (723)
..++++|++ ...|+|||+.+++||+++|+|+||||||||+++|+ |.+ .++. .+.|
T Consensus 628 ~~L~v~~l~----------~~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~ 697 (972)
T 2r6f_A 628 RWLEVVGAR----------EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH 697 (972)
T ss_dssp CEEEEEEEC----------SSSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGG
T ss_pred eEEEEecCc----------ccccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccc
Confidence 457788774 13799999999999999999999999999999854 211 2221 1234
Q ss_pred ---EEEECCEeCCC-CC-----------------------ceEEEEcCCCccC----------------------C----
Q 004929 169 ---EVFVNGAKSEM-PY-----------------------GSYGFVERETTLI----------------------G---- 195 (723)
Q Consensus 169 ---~I~i~G~~~~~-~~-----------------------~~~~yv~Q~~~l~----------------------~---- 195 (723)
.|.++|.++.. .+ +..||++|...+. +
T Consensus 698 ~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~ 777 (972)
T 2r6f_A 698 LDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYV 777 (972)
T ss_dssp CSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEE
T ss_pred cceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccc
Confidence 57888866421 00 1235665543221 1
Q ss_pred ----------------------------CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HhhhhhcCCCCCC
Q 004929 196 ----------------------------SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMK 246 (723)
Q Consensus 196 ----------------------------~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~ 246 (723)
.+||.|++.|.. .. ....++.++++.+||.. ..++. +.
T Consensus 778 ~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~--~~-----~~~~~~~~~L~~~gL~~~~l~~~------~~ 844 (972)
T 2r6f_A 778 PCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFA--SI-----PKIKRKLETLYDVGLGYMKLGQP------AT 844 (972)
T ss_dssp ECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTC--SC-----HHHHHHHHHHHHTTCSSSBTTCC------GG
T ss_pred cccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHh--cc-----hhHHHHHHHHHHcCCCcccccCc------hh
Confidence 357777776521 11 12234678999999986 55554 45
Q ss_pred CCCHHHHHHHHHHHHHhhCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE--
Q 004929 247 GLPCGERRRVRIARELVMRP---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL-- 321 (723)
Q Consensus 247 ~LSGGerqRv~IA~aL~~~P---~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL-- 321 (723)
.|||||||||+||++|+.+| +||||||||+|||+.++..+++.|++++++|.|||+++|+. ..+ ..||+|++|
T Consensus 845 ~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl-~~i-~~aDrIivL~p 922 (972)
T 2r6f_A 845 TLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL-DVI-KTADYIIDLGP 922 (972)
T ss_dssp GCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEECS
T ss_pred hCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-HhCCEEEEEcC
Confidence 99999999999999999865 99999999999999999999999999998899999988886 344 689999999
Q ss_pred ----eCCeEEEEeChhHHHH
Q 004929 322 ----SNGNTLFFGETLACLQ 337 (723)
Q Consensus 322 ----~~G~iv~~G~~~~~~~ 337 (723)
++|++++.|+++++..
T Consensus 923 ~gG~~~G~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 923 EGGDRGGQIVAVGTPEEVAE 942 (972)
T ss_dssp SSTTSCCSEEEEESHHHHHT
T ss_pred CCCCCCCEEEEecCHHHHHh
Confidence 7899999999988754
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.96 E-value=1.8e-29 Score=299.34 Aligned_cols=208 Identities=22% Similarity=0.206 Sum_probs=155.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHH-HHcCC-------CC--C----------
Q 004929 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRA-IAGRL-------PH--S---------- 163 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~-L~G~~-------~~--~---------- 163 (723)
..++++|+++ ..|+|||+.+++||++||+|+||||||||+++ |+|++ ++ +
T Consensus 501 ~~L~v~~l~~----------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~ 570 (842)
T 2vf7_A 501 GWLELNGVTR----------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHT 570 (842)
T ss_dssp CEEEEEEEEE----------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC----------------
T ss_pred ceEEEEeeee----------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccc
Confidence 4688999864 26999999999999999999999999999996 77543 12 0
Q ss_pred ---CCcee-------EEEECCEeCCCCCc----------------------------------------------eEEEE
Q 004929 164 ---ARMYG-------EVFVNGAKSEMPYG----------------------------------------------SYGFV 187 (723)
Q Consensus 164 ---~~~~G-------~I~i~G~~~~~~~~----------------------------------------------~~~yv 187 (723)
....| .|.++|.++....+ ..|++
T Consensus 571 ~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~ 650 (842)
T 2vf7_A 571 AGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWV 650 (842)
T ss_dssp -CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEE
T ss_pred cccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCcc
Confidence 01356 78898875421100 01122
Q ss_pred cCCCccCC------------------------CCC--------HHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchH-
Q 004929 188 ERETTLIG------------------------SLT--------VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY- 234 (723)
Q Consensus 188 ~Q~~~l~~------------------------~lT--------V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~- 234 (723)
..+..+++ ..+ +.|++.|. .. ....+++.++++.+||...
T Consensus 651 ~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~-----~~--~~~~~~~~~~L~~~gL~~~~ 723 (842)
T 2vf7_A 651 MVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFF-----AD--ESAIFRALDTLREVGLGYLR 723 (842)
T ss_dssp EETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHT-----TT--SHHHHHHHHHHHHTTCTTSB
T ss_pred chhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHh-----hc--chHHHHHHHHHHHcCCCccc
Confidence 11112222 234 44444331 11 1223568899999999763
Q ss_pred hhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHH
Q 004929 235 ANKLIGGHCYMKGLPCGERRRVRIARELVMR---PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEV 311 (723)
Q Consensus 235 ~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~---P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i 311 (723)
.++ .+..|||||||||+||++|+.+ |+||||||||+|||+.+...++++|++++++|.|||+++|+. +++
T Consensus 724 l~~------~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl-~~i 796 (842)
T 2vf7_A 724 LGQ------PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKM-QVV 796 (842)
T ss_dssp TTC------CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH
T ss_pred ccC------CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH
Confidence 444 3459999999999999999996 799999999999999999999999999998899999988876 466
Q ss_pred HhcCCEEEEE------eCCeEEEEeChhHHH
Q 004929 312 FGLFDRICLL------SNGNTLFFGETLACL 336 (723)
Q Consensus 312 ~~~~D~v~vL------~~G~iv~~G~~~~~~ 336 (723)
..||+|++| ++|++++.|+++++.
T Consensus 797 -~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 797 -AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp -TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred -HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 789999999 799999999998864
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.96 E-value=4.5e-29 Score=297.32 Aligned_cols=209 Identities=20% Similarity=0.219 Sum_probs=153.5
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHH-c----CCC-----CCC--Ccee---
Q 004929 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA-G----RLP-----HSA--RMYG--- 168 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~-G----~~~-----~~~--~~~G--- 168 (723)
..++++|++ ...|+|||+.+++||++||+|+||||||||+++|+ | .+. ++. .+.|
T Consensus 646 ~~L~v~~l~----------~~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~ 715 (993)
T 2ygr_A 646 RQLTVVGAR----------EHNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDY 715 (993)
T ss_dssp SEEEEEEEC----------STTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTT
T ss_pred ceEEEecCc----------cccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccc
Confidence 457888874 13699999999999999999999999999999853 2 221 111 0112
Q ss_pred ---EEEECCEeCCC-CC-----------------------ceEEEEcCCCccC----------------------C----
Q 004929 169 ---EVFVNGAKSEM-PY-----------------------GSYGFVERETTLI----------------------G---- 195 (723)
Q Consensus 169 ---~I~i~G~~~~~-~~-----------------------~~~~yv~Q~~~l~----------------------~---- 195 (723)
.|.+++.++.. .+ +..||++|...+. +
T Consensus 716 ~~~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~ 795 (993)
T 2ygr_A 716 LDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYV 795 (993)
T ss_dssp CSEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEE
T ss_pred cceEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhcccccee
Confidence 34555544310 00 1134555532211 1
Q ss_pred ----------------------------CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HhhhhhcCCCCCC
Q 004929 196 ----------------------------SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMK 246 (723)
Q Consensus 196 ----------------------------~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~ 246 (723)
.+||.|++.|... . ....++.++++.+||.. ..++. +.
T Consensus 796 ~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~--~-----~~~~~~~~~L~~lgL~~~~l~~~------~~ 862 (993)
T 2ygr_A 796 PCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP--I-----AGVHRYLRTLVDVGLGYVRLGQP------AP 862 (993)
T ss_dssp ECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT--C-----HHHHHHHHHHHHTTGGGSBTTCC------GG
T ss_pred eehhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc--c-----hHHHHHHHHHHHcCCCcccccCc------cc
Confidence 2567777655211 1 12234578999999976 45554 45
Q ss_pred CCCHHHHHHHHHHHHHhhCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE--
Q 004929 247 GLPCGERRRVRIARELVMRP---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL-- 321 (723)
Q Consensus 247 ~LSGGerqRv~IA~aL~~~P---~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL-- 321 (723)
.|||||||||+||++|+.+| +||||||||+|||+.+...+++.|++++++|.|||+++|+. ..+ ..||+|++|
T Consensus 863 ~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl-~~i-~~aDrIivL~p 940 (993)
T 2ygr_A 863 TLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNL-DVI-KTSDWIIDLGP 940 (993)
T ss_dssp GSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEEES
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-HhCCEEEEECC
Confidence 99999999999999999865 99999999999999999999999999998899999988886 344 689999999
Q ss_pred ----eCCeEEEEeChhHHHH
Q 004929 322 ----SNGNTLFFGETLACLQ 337 (723)
Q Consensus 322 ----~~G~iv~~G~~~~~~~ 337 (723)
++|++++.|+++++..
T Consensus 941 ~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 941 EGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp SSTTSCSEEEEEECHHHHHH
T ss_pred CcCCCCCEEEEecCHHHHHh
Confidence 6899999999998764
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.8e-31 Score=294.14 Aligned_cols=185 Identities=13% Similarity=0.115 Sum_probs=146.6
Q ss_pred eceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-E-EEECCEeCCCCCceEEEEcCCCc---cCCCCCHHH
Q 004929 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG-E-VFVNGAKSEMPYGSYGFVERETT---LIGSLTVRE 201 (723)
Q Consensus 127 ~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G-~-I~i~G~~~~~~~~~~~yv~Q~~~---l~~~lTV~E 201 (723)
.++|+.+++|++++|+||||||||||+|+|+|+.+++ +| + |.++|. ..+.++|++|+.. +.+.+||+|
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~----~~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD----PQQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC----TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC----ccCCeeeeccchhhcccccccchhh
Confidence 4789999999999999999999999999999999876 49 8 999983 2456899999974 445679999
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH--HhhCCcE----EEEeC-C
Q 004929 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE--LVMRPHV----LFIDE-P 274 (723)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a--L~~~P~l----LlLDE-P 274 (723)
|+ ++...... . ..++++.++++.+|+.+..+ + .+|||||||||+|||+ |+.+|++ ||||| |
T Consensus 202 ni-~~~~~~~~-~--~~~~~~~~ll~~~gl~~~~~--~------~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpP 269 (460)
T 2npi_A 202 PT-WGQSLTSG-A--TLLHNKQPMVKNFGLERINE--N------KDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPS 269 (460)
T ss_dssp TT-CSCBCBSS-C--CSSCCBCCEECCCCSSSGGG--C------HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCC
T ss_pred hh-cccccccC-c--chHHHHHHHHHHhCCCcccc--h------hhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCc
Confidence 88 54321111 0 11233556778888877654 2 3899999999999999 9999999 99999 9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh--H---HHHhcCCE-----EEEEe-CCeEEEEeChhHH
Q 004929 275 LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS--T---EVFGLFDR-----ICLLS-NGNTLFFGETLAC 335 (723)
Q Consensus 275 TsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~--~---~i~~~~D~-----v~vL~-~G~iv~~G~~~~~ 335 (723)
|++||+. ...+.+++++ .+.|+|+++|+.. . ++.++||+ |++|+ +|+++ .|+++++
T Consensus 270 ts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 270 ISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp GGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred ccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 9999999 4444444443 3778888888864 1 56689999 99999 99999 9998765
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.94 E-value=3.5e-27 Score=261.51 Aligned_cols=202 Identities=13% Similarity=0.088 Sum_probs=142.5
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-----------------------------------CCcee
Q 004929 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-----------------------------------ARMYG 168 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~-----------------------------------~~~~G 168 (723)
.+++++++.+.+| +++|+|||||||||||++|+++.... ..-.|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4789999999999 99999999999999999998876421 01148
Q ss_pred EEEECCEeCCC------CCceEEEEcCCCccCCCCCHHHHHHHHHHhc-----------------------CCCc-----
Q 004929 169 EVFVNGAKSEM------PYGSYGFVERETTLIGSLTVREYLYYSALLQ-----------------------LPGF----- 214 (723)
Q Consensus 169 ~I~i~G~~~~~------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~-----------------------~~~~----- 214 (723)
++.+||++... ....+++++|++.++.. +..+...|.-... +...
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 89999987542 11237999998766532 4444333211100 0000
Q ss_pred -------------------------------cchHHHHHHHHHHHcCCchHh----------------hh---hhcCC--
Q 004929 215 -------------------------------FCQRKNVVEDAIHAMSLSDYA----------------NK---LIGGH-- 242 (723)
Q Consensus 215 -------------------------------~~~~~~~v~~~l~~lgL~~~~----------------~~---~ig~~-- 242 (723)
...-.+.+++.++.+++.+.. ++ .+..+
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 000112344555666554310 00 01100
Q ss_pred ---CCCCC-CCHHHHHHHHHHHHHhhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCC
Q 004929 243 ---CYMKG-LPCGERRRVRIARELVMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 316 (723)
Q Consensus 243 ---~~~~~-LSGGerqRv~IA~aL~~~P--~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D 316 (723)
...+. |||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||+++|++ ++...||
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcC
Confidence 11122 6999999999999999999 9999999999999999999999999998 589999999986 4567899
Q ss_pred EEEEE----eCCeEEEEe
Q 004929 317 RICLL----SNGNTLFFG 330 (723)
Q Consensus 317 ~v~vL----~~G~iv~~G 330 (723)
++++| ++|+++...
T Consensus 364 ~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 364 HHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEeccCCceEEEE
Confidence 99999 999987654
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.91 E-value=4e-24 Score=233.63 Aligned_cols=83 Identities=25% Similarity=0.331 Sum_probs=76.4
Q ss_pred CCCCCCHHHHHHHHHHHHHh------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCE
Q 004929 244 YMKGLPCGERRRVRIARELV------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (723)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~------~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (723)
.+.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|++++++|.|||+++|++. . .+.||+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~-~-~~~~d~ 353 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE-F-SEAFDR 353 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH-H-HTTCSC
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH-H-HHhCCE
Confidence 56689999999999999999 699999999999999999999999999999988999999998863 3 678999
Q ss_pred EEEEeCCeEEE
Q 004929 318 ICLLSNGNTLF 328 (723)
Q Consensus 318 v~vL~~G~iv~ 328 (723)
+++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999974
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.91 E-value=1.3e-27 Score=241.11 Aligned_cols=143 Identities=20% Similarity=0.200 Sum_probs=98.2
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC--EeCCCCCceEEEEcCCCccCCCCCH
Q 004929 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG--AKSEMPYGSYGFVERETTLIGSLTV 199 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G--~~~~~~~~~~~yv~Q~~~l~~~lTV 199 (723)
.+.+|+|| ++||+++|+||||||||||+|+|+|+ +|++ |+|.... .+.....+.++|++|++
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~---G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQS---KQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHT---TSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcC---CeeeeEEecCCchhhhcceEEecCCH--------
Confidence 45689986 79999999999999999999999999 8764 7773211 11112235689999975
Q ss_pred HHHH-HHHHH--hcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 004929 200 REYL-YYSAL--LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (723)
Q Consensus 200 ~E~l-~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTs 276 (723)
+||+ .+... ...... ...++++++++. +| ||||||+|||||+.+|++|||||||+
T Consensus 76 ~enl~~~~~~~~~~~~~~--~~~~~~~~~l~~------------------gl--Gq~qrv~lAraL~~~p~lllLDEPts 133 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRDM--VEPEVIPKLMEA------------------GI--VEVAPLAYMRGRTLNDAFVILDEAQN 133 (208)
T ss_dssp ----CTTTHHHHHHHTTT--SCTTHHHHHHHT------------------TS--EEEEEGGGGTTCCBCSEEEEECSGGG
T ss_pred HHHHHHHHHHHHHHHHHh--ccHHHHHHHHHh------------------CC--chHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 4444 22100 000000 011233444432 22 99999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 004929 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (723)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (723)
| ++..+++.|+++ ++|+||| ++|++.
T Consensus 134 ~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 134 T----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp C----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred c----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9 899999999998 6789999 889864
No 68
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.90 E-value=3.7e-25 Score=216.00 Aligned_cols=146 Identities=14% Similarity=0.126 Sum_probs=99.1
Q ss_pred ceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccC-CCCCHHHHHHHH
Q 004929 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI-GSLTVREYLYYS 206 (723)
Q Consensus 128 ~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~-~~lTV~E~l~~~ 206 (723)
|||+.+++||+++|+||||||||||+|++.+ |...+++.. ..++++|+..-. ..-++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~---------~~~~~~~d~------~~g~~~~~~~~~~~~~~~~~~~~-- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK---------PTEVISSDF------CRGLMSDDENDQTVTGAAFDVLH-- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC---------GGGEEEHHH------HHHHHCSSTTCGGGHHHHHHHHH--
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc---------CCeEEccHH------HHHHhcCcccchhhHHHHHHHHH--
Confidence 6899999999999999999999999998653 111121110 114444542110 0001111111
Q ss_pred HHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH-----
Q 004929 207 ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV----- 281 (723)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~----- 281 (723)
. ..+.....|.....+. ....|||||||++|||+|+.+|++|+|||||++||+.
T Consensus 64 -------------~-~~~~~~~~g~~~~~~~-------~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 -------------Y-IVSKRLQLGKLTVVDA-------TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp -------------H-HHHHHHHTTCCEEEES-------CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred -------------H-HHHHHHhCCCeEEEEC-------CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 1 1111223344333332 2356999999999999999999999999999999999
Q ss_pred -----------HHHHHHHHHHHHHHcCCEEEEEEeCChHHHH
Q 004929 282 -----------SALLMMVTLKKLASTGCTLLFTINQSSTEVF 312 (723)
Q Consensus 282 -----------~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~ 312 (723)
.+..+.+.|++++++|.|+|+++|++. ++.
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~-~~~ 163 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE-EVE 163 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH-HHH
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH-Hhh
Confidence 668999999999878999999998863 443
No 69
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=3.9e-24 Score=229.77 Aligned_cols=88 Identities=19% Similarity=0.140 Sum_probs=73.3
Q ss_pred CCCCCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEE-
Q 004929 244 YMKGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI- 318 (723)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~----~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v- 318 (723)
.+..||||||||++||++|+ .+|++|||||||++||+..+..+.+.|++++ +|.++|+++|++ ++.+.||++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~~~ 292 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADLLH 292 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSEEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCceEE
Confidence 45689999999999999997 5789999999999999999999999999985 578999999985 467899987
Q ss_pred -EEEeCCeE-EEEeChhH
Q 004929 319 -CLLSNGNT-LFFGETLA 334 (723)
Q Consensus 319 -~vL~~G~i-v~~G~~~~ 334 (723)
++|.+|+. +.....++
T Consensus 293 ~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEESSSCEEEEECCC--
T ss_pred EEEEeCCEEEEEEEEcch
Confidence 78887754 44444444
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.88 E-value=3.9e-26 Score=252.04 Aligned_cols=171 Identities=12% Similarity=0.159 Sum_probs=134.0
Q ss_pred ccceeeceeeEEeCCc--------------------EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 004929 122 SDKVVKSSNGYALPGT--------------------MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge--------------------~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~ 181 (723)
.+.+|++||+.+++|+ ++||+||||||||||+|+|+|+.+|+. |+|.++|.+.. +
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~---GsI~~~g~~~t--~ 109 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEE---GAAKTGVVEVT--M 109 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTST---TSCCCCC------C
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccC---ceEEECCeecc--e
Confidence 4568999999999999 999999999999999999999999875 99999987542 1
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHH--HHHHHHHH
Q 004929 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG--ERRRVRIA 259 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGG--erqRv~IA 259 (723)
.++++|++ .++.+|+.|++.+.. .+.+++++++.+++.+.. . .+ .|||| ||||+.||
T Consensus 110 --~~~v~q~~-~~~~ltv~D~~g~~~----------~~~~~~~~L~~~~L~~~~-~------~~-~lS~G~~~kqrv~la 168 (413)
T 1tq4_A 110 --ERHPYKHP-NIPNVVFWDLPGIGS----------TNFPPDTYLEKMKFYEYD-F------FI-IISATRFKKNDIDIA 168 (413)
T ss_dssp --CCEEEECS-SCTTEEEEECCCGGG----------SSCCHHHHHHHTTGGGCS-E------EE-EEESSCCCHHHHHHH
T ss_pred --eEEecccc-ccCCeeehHhhcccc----------hHHHHHHHHHHcCCCccC-C------eE-EeCCCCccHHHHHHH
Confidence 27788875 567889988764321 123467889999987542 2 12 29999 99999999
Q ss_pred HHHhh----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HcC----CEEEEEEeCChH-HHHhcCCEE
Q 004929 260 RELVM----------RPHVLFIDEPLYHLDSVSALLMMVTLKKLA-----STG----CTLLFTINQSST-EVFGLFDRI 318 (723)
Q Consensus 260 ~aL~~----------~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~-----~~g----~tvi~t~h~~~~-~i~~~~D~v 318 (723)
++|+. +|++++|||||+|||+.++.++++.|+++. +.| .++++++|.... .+.+++|+|
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 99999 999999999999999999999999999985 333 567777776532 255666655
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.87 E-value=1.9e-23 Score=205.57 Aligned_cols=147 Identities=18% Similarity=0.131 Sum_probs=103.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCcc
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF 215 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~--~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~ 215 (723)
.++|+||||||||||+|+|+|++.. ...|... .... ...+.++|++|+. ++.+++. .+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i--~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~~----~~~~~-- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKIF----SSKFF-- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEE---EEEC------CCEEEEEET------TCCEEEE----EETTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cCCCEEh---hhhccccccceeEEEeecC------cHHHHHH----HhhcC--
Confidence 5899999999999999999998742 1234221 1111 2235689999875 2222220 00000
Q ss_pred chHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH-----HhhCCcEEEEeC--CCCCCCHHHHHHHHH
Q 004929 216 CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE-----LVMRPHVLFIDE--PLYHLDSVSALLMMV 288 (723)
Q Consensus 216 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a-----L~~~P~lLlLDE--PTsgLD~~~~~~i~~ 288 (723)
.-.+..+ .++..||||||||++||++ |+.+|++|+||| ||++||+..+..+.+
T Consensus 65 --------------~~~~~~~------~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~ 124 (178)
T 1ye8_A 65 --------------TSKKLVG------SYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQ 124 (178)
T ss_dssp --------------CCSSEET------TEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHH
T ss_pred --------------Ccccccc------ccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHH
Confidence 0001222 2455899999999999996 999999999999 999999999999988
Q ss_pred HHHHHHHcCCEEEEEEe--CChHHHHhcCCEEEEEeCCeEEE
Q 004929 289 TLKKLASTGCTLLFTIN--QSSTEVFGLFDRICLLSNGNTLF 328 (723)
Q Consensus 289 ~L~~l~~~g~tvi~t~h--~~~~~i~~~~D~v~vL~~G~iv~ 328 (723)
.|++ .+.|+|+++| |+...+..++|+ .+|++++
T Consensus 125 ~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 125 IMHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 8876 4677888887 677788888998 5567665
No 72
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.86 E-value=1.5e-23 Score=223.14 Aligned_cols=172 Identities=14% Similarity=0.066 Sum_probs=134.2
Q ss_pred eeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------CceEEEEcCCCc-c
Q 004929 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----------YGSYGFVERETT-L 193 (723)
Q Consensus 126 L~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~-----------~~~~~yv~Q~~~-l 193 (723)
++++|+.+++|++++|+||||||||||+++|+|++++.+ |+|.++|.+.... +..++|++|++. +
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~---g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG---TKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 356888899999999999999999999999999988764 9999999764321 125899999988 8
Q ss_pred CCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEE
Q 004929 194 IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPH--VLFI 271 (723)
Q Consensus 194 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~--lLlL 271 (723)
+|.+|++|++.++.... .. ..+++.+|+.+..++.++ +|| |||++|||+|+.+|+ +|+|
T Consensus 167 ~~~~~v~e~l~~~~~~~--~d--------~~lldt~gl~~~~~~~~~------eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEG--YD--------VVLCDTSGRLHTNYSLME------ELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp CHHHHHHHHHHHHHHTT--CS--------EEEECCCCCSSCCHHHHH------HHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred CHHHHHHHHHHHHHHcC--Cc--------chHHhcCCCCcchhHHHH------HHH---HHHHHHHHhhccCCCeeEEEE
Confidence 89999999998754211 00 134567788777776654 899 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCCh--------HHHHhcCCEEEEEeCCeE
Q 004929 272 DEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSS--------TEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 272 DEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~--------~~i~~~~D~v~vL~~G~i 326 (723)
| ||+|||+..+ ++++. +.|.|+|+++|.+. ..+....+.|.++..|+.
T Consensus 228 D-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 228 D-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred e-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9 9999998865 34565 35899999888442 334456778888888864
No 73
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.85 E-value=1.9e-25 Score=224.58 Aligned_cols=177 Identities=13% Similarity=0.102 Sum_probs=118.4
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CCCCceEEEEcCCCccCCCCCHHH
Q 004929 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EMPYGSYGFVERETTLIGSLTVRE 201 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~-~~~~~~~~yv~Q~~~l~~~lTV~E 201 (723)
..+++| ..+++||+++|+||||||||||+|+|+|+++. +.+.+.+.+.+. ....+.++|++|+..+++.+|+.|
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcccccCCCeeEecCHHHHHHHHhcC
Confidence 456777 68889999999999999999999999999852 223332323221 112346899999988888888877
Q ss_pred HHHHHHHh----cCCCc-cchHHHHHHHH------HHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEE
Q 004929 202 YLYYSALL----QLPGF-FCQRKNVVEDA------IHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLF 270 (723)
Q Consensus 202 ~l~~~~~~----~~~~~-~~~~~~~v~~~------l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLl 270 (723)
++...... ...+. ..+.++++++. ++.+|+.+..++. ++.|| +|+.+|++++
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~------~~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTM------PEAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHC------TTSEE-----------EEEECSCHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhc------CCcEE-----------EEEECCCHHH
Confidence 65321000 00000 01123344444 5556666666654 34788 8999999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEe
Q 004929 271 IDEPLYHL----DSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS 322 (723)
Q Consensus 271 LDEPTsgL----D~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (723)
|||||+|| |+..+.++.+.++++++ .|.|+|+++|+. +++.++||+|++|.
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRL-ESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSH-HHHHHHHHHHHC--
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCH-HHHHHHHHHHHHhc
Confidence 99999998 78899999999999984 589999987765 68999999999984
No 74
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.85 E-value=7.6e-25 Score=232.55 Aligned_cols=168 Identities=12% Similarity=0.107 Sum_probs=126.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 004929 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (723)
++++||++.|. +.+|+++|+.+++|++++|+||||||||||+++|+|++ . |+|. +
T Consensus 102 i~~~~vs~~y~------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~--~----G~I~-------------~ 156 (305)
T 2v9p_A 102 FNYQNIELITF------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL--G----GSVL-------------S 156 (305)
T ss_dssp HHHTTCCHHHH------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH--T----CEEE-------------C
T ss_pred EEEEEEEEEcC------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc--C----ceEE-------------E
Confidence 67888888763 46999999999999999999999999999999999998 2 8883 4
Q ss_pred EEcCCCccCCCCCHHH-HHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 004929 186 FVERETTLIGSLTVRE-YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (723)
Q Consensus 186 yv~Q~~~l~~~lTV~E-~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~ 264 (723)
|++|++.++. .|++| |+.+. + .. ...+.+.++.+ |.+..+ +..|||||||| ||||+.
T Consensus 157 ~v~q~~~lf~-~ti~~~ni~~~-----~-~~---~~~~~~~i~~~-L~~gld--------g~~LSgGqkQR---ARAll~ 214 (305)
T 2v9p_A 157 FANHKSHFWL-ASLADTRAALV-----D-DA---THACWRYFDTY-LRNALD--------GYPVSIDRKHK---AAVQIK 214 (305)
T ss_dssp GGGTTSGGGG-GGGTTCSCEEE-----E-EE---CHHHHHHHHHT-TTGGGG--------TCCEECCCSSC---CCCEEC
T ss_pred EecCcccccc-ccHHHHhhccC-----c-cc---cHHHHHHHHHH-hHccCC--------ccCcCHHHHHH---HHHHhC
Confidence 5678777775 47776 66431 1 11 11345556653 433333 34899999999 999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHhhh
Q 004929 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 341 (723)
Q Consensus 265 ~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~ 341 (723)
+|+||| ||+||+.++..+..+ +|.+ ...+.||+| +|++|++++.|+.+++...|.+
T Consensus 215 ~p~iLl----Ts~LD~~~~~~i~~l--------------tH~~--~~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 215 APPLLV----TSNIDVQAEDRYLYL--------------HSRV--QTFRFEQPC-TDESGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp CCCEEE----EESSCSTTCGGGGGG--------------TTTE--EEEECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred CCCEEE----ECCCCHHHHHHHHHH--------------hCCH--HHHHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence 999999 999999999888621 4544 345789999 9999999999999988555544
No 75
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.84 E-value=5.5e-23 Score=215.46 Aligned_cols=145 Identities=17% Similarity=0.193 Sum_probs=97.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCcc
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF 215 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~ 215 (723)
.++|+||||||||||+|+|+|+.+|+. |+|.++|++... ..+.++|++|++.+++.+||.||+.|+.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~---G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~---- 76 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRK---ASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN---- 76 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCC---CccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc----
Confidence 489999999999999999999998874 999999986532 23579999999999999999999977542221
Q ss_pred chHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 004929 216 CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS 295 (723)
Q Consensus 216 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~ 295 (723)
....+.+.+.++ .+..+...+ +||||||||++|||+++. ++++|||++|||+.. .+.++.+.+
T Consensus 77 ~~~~~~i~~~~~----~~~~~~~~~------~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 77 ENCWEPIEKYIN----EQYEKFLKE------EVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp TTCSHHHHHHHH----HHHHHHHHH------HSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred HHHHHHHHHHHH----HHHHhhhHH------hcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 111223444443 455666554 899999999999999886 999999999999987 566667766
Q ss_pred cCCEEEEEEeCC
Q 004929 296 TGCTLLFTINQS 307 (723)
Q Consensus 296 ~g~tvi~t~h~~ 307 (723)
. .++|+++|.-
T Consensus 140 ~-~~vI~Vi~K~ 150 (270)
T 3sop_A 140 V-VNIIPVIAKA 150 (270)
T ss_dssp T-SEEEEEETTG
T ss_pred c-CcEEEEEecc
Confidence 5 8888888764
No 76
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.83 E-value=2.4e-22 Score=218.09 Aligned_cols=171 Identities=14% Similarity=0.080 Sum_probs=134.8
Q ss_pred eceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------CceEEEEcCCCc-cC
Q 004929 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----------YGSYGFVERETT-LI 194 (723)
Q Consensus 127 ~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~-----------~~~~~yv~Q~~~-l~ 194 (723)
..+|+.+++|++++|+||||||||||++.|+|++++.+ |+|.++|.+.... +..++|++|++. ++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~---G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG---TKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccC---CEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 46888899999999999999999999999999988764 9999999764321 135899999988 88
Q ss_pred CCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEe
Q 004929 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPH--VLFID 272 (723)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~--lLlLD 272 (723)
|.+|++|++.++..... . ..+++.+|+.+..++.+. +|| |||++|||+|+.+|+ +|+||
T Consensus 225 p~~tv~e~l~~~~~~~~--d--------~~lldt~Gl~~~~~~~~~------eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 225 AATVLSKAVKRGKEEGY--D--------VVLCDTSGRLHTNYSLME------ELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHHTTC--S--------EEEEECCCCSSCCHHHHH------HHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhhHHHHHHHHHhCCC--H--------HHHHHhcCCChhhhhHHH------HHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 99999999987642110 0 134566788777666654 899 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCCh--------HHHHhcCCEEEEEeCCeE
Q 004929 273 EPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSS--------TEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 273 EPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~--------~~i~~~~D~v~vL~~G~i 326 (723)
||+|||+..+. +++.+ .|.|+|+++|.+. ..+....+.|..+..|+.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99999988653 45553 5899999888542 234456778888888864
No 77
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.81 E-value=6.8e-20 Score=199.10 Aligned_cols=84 Identities=13% Similarity=0.010 Sum_probs=74.0
Q ss_pred CCC-CCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHh
Q 004929 244 YMK-GLPCGERRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 313 (723)
Q Consensus 244 ~~~-~LSGGerqRv~IA~aL~---------~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~ 313 (723)
.++ .||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|+++| +. .
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th-~~-~--- 332 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTE-LA-P--- 332 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESS-CC-T---
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEe-cc-c---
Confidence 345 69999999999999999 8999999999999999999999999998874 57776666 43 2
Q ss_pred cCCEEEEEeCCeEEEEeChhHH
Q 004929 314 LFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 314 ~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
.+|++++|++|+++..|+++++
T Consensus 333 ~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp TCSEEEEEETTEEEECCCTTTS
T ss_pred cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998764
No 78
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.81 E-value=1.8e-21 Score=209.79 Aligned_cols=130 Identities=18% Similarity=0.160 Sum_probs=105.1
Q ss_pred eeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCceEEEEcCCCccCCCCCHHH
Q 004929 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYGSYGFVERETTLIGSLTVRE 201 (723)
Q Consensus 125 iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~E 201 (723)
+++++|+.+++|++++|+||||||||||+++|+|+++|+. |.|.++|.+.-. ..+.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~---g~i~i~~~~e~~~~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE---RIISIEDTEEIVFKHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTS---CEEEEESSCCCCCSSCSSEEEEEC-------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCC---cEEEECCeeccccccchhEEEEEe-------------
Confidence 7999999999999999999999999999999999999874 999999853100 001111110
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 004929 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281 (723)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~ 281 (723)
+ |||+||++||+||..+|++|++||||+
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~----- 251 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS----- 251 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-----
Confidence 1 799999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004929 282 SALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 282 ~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
.++.+.|+.+...+.|+++|+|.++ +.+.+||+++|.+|+.
T Consensus 252 --~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 252 --SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp --THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred --HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 2456778777654558999999985 6778999999988753
No 79
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.80 E-value=4e-24 Score=217.01 Aligned_cols=171 Identities=12% Similarity=0.115 Sum_probs=109.3
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------CCceEEEEcCCCccCCCC
Q 004929 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------PYGSYGFVERETTLIGSL 197 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------~~~~~~yv~Q~~~l~~~l 197 (723)
.-|+|||+.+++|++++|+||||||||||+++|+|+. | |+|.+ |.+... ..+.++|++|++.+++.+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 4689999999999999999999999999999999987 4 77888 654211 124678999987666543
Q ss_pred C-HHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHH-----HHHHhhCCcEEEE
Q 004929 198 T-VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI-----ARELVMRPHVLFI 271 (723)
Q Consensus 198 T-V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I-----A~aL~~~P~lLlL 271 (723)
+ +.+++.+. ... ..........++++++...+. ..+ .+||||||||++| +++++.+|++++|
T Consensus 84 ~~~~~~l~~~-~~~-~~~~g~~~~~i~~~l~~~~~~-il~---------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 84 LKNEDFLEYD-NYA-NNFYGTLKSEYDKAKEQNKIC-LFE---------MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp HHTTCEEEEE-EET-TEEEEEEHHHHHHHHHTTCEE-EEE---------ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred hhccchhhhh-hcc-cccCCCcHHHHHHHHhCCCcE-EEE---------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 2 11111100 000 000111234567777654321 111 3799999999999 8999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 004929 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (723)
Q Consensus 272 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (723)
||||+++|..+...+.+.|+++.++ .+ .+| ...||.|+++++
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~-~~---~~h------~~~~d~iiv~~~ 193 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIE-LH---EAN------LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHH-HH---HHT------TSCCSEEEECSS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHH-HH---hhc------ccCCCEEEECCC
Confidence 9999999999999999999887643 22 123 145787776653
No 80
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.80 E-value=7.8e-23 Score=228.02 Aligned_cols=190 Identities=11% Similarity=0.017 Sum_probs=148.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCCC--
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA---KSEM-- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~---~~~~-- 179 (723)
.++++++++.|.. +.++|+++ +.+.+||+++|+||||||||||+++|+|+.+++ .|.|.++|+ +...
T Consensus 131 ~l~~~~v~~~~~t----g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~ 202 (438)
T 2dpy_A 131 PLQRTPIEHVLDT----GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFI 202 (438)
T ss_dssp TTTSCCCCSBCCC----SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHH
T ss_pred ceEEeccceecCC----CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHH
Confidence 4678888877741 35799999 999999999999999999999999999999886 499999997 3211
Q ss_pred --------CCceEEEEcCC-CccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCH
Q 004929 180 --------PYGSYGFVERE-TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (723)
Q Consensus 180 --------~~~~~~yv~Q~-~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSG 250 (723)
..+.++|++|+ +.+++.+||.+|+.+.+...... .+ ......+ ....+|+
T Consensus 203 ~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-----~~---------~v~~~ld-------~l~~lS~ 261 (438)
T 2dpy_A 203 ENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-----GQ---------HVLLIMD-------SLTRYAM 261 (438)
T ss_dssp HTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-----TC---------EEEEEEE-------CHHHHHH
T ss_pred HhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-----CC---------CHHHHHH-------hHHHHHH
Confidence 12468999995 56677889999997765321000 00 0011111 1237999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH---c-CC-----EEEEEEeCChHHHHhcCCEEEEE
Q 004929 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS---T-GC-----TLLFTINQSSTEVFGLFDRICLL 321 (723)
Q Consensus 251 GerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~---~-g~-----tvi~t~h~~~~~i~~~~D~v~vL 321 (723)
|| |||+|| +.+|++ |+|||+.+...+.++++++.+ + |. ||++++|+.. ..+||++++|
T Consensus 262 g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l 328 (438)
T 2dpy_A 262 AQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAI 328 (438)
T ss_dssp HH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHH
T ss_pred HH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEE
Confidence 99 999999 889988 999999999999999999876 3 64 8888888765 5679999999
Q ss_pred eCCeEEEEeChhHHH
Q 004929 322 SNGNTLFFGETLACL 336 (723)
Q Consensus 322 ~~G~iv~~G~~~~~~ 336 (723)
.+|+++..|++.++.
T Consensus 329 ~dG~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 329 LDGHIVLSRRLAEAG 343 (438)
T ss_dssp SSEEEEECHHHHHTT
T ss_pred eCcEEEEeCCHHHcc
Confidence 999999999877653
No 81
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.80 E-value=3.4e-20 Score=221.80 Aligned_cols=162 Identities=22% Similarity=0.233 Sum_probs=125.5
Q ss_pred HHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccc-------hHHHHHH
Q 004929 151 TLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC-------QRKNVVE 223 (723)
Q Consensus 151 TLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~-------~~~~~v~ 223 (723)
|...|..+++.+.. |+|.++|+++. -+..+||.|++.|...+.+..... +..++..
T Consensus 383 ~C~~C~g~rl~~~~---~~V~i~G~~i~--------------~~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 445 (916)
T 3pih_A 383 TCSVCGGRRLNREA---LSVKINGLNIH--------------EFTELSISEELEFLKNLNLTEREREIVGELLKEIEKRL 445 (916)
T ss_dssp ECTTTCSCCBCTTG---GGEEETTEEHH--------------HHHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHH
T ss_pred cchhcccccCChHh---cCcEECCccHH--------------HhhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHH
Confidence 34455666677654 99999998642 133578999988755443322110 1113345
Q ss_pred HHHHHcCCchH-hhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 004929 224 DAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMRPH--VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300 (723)
Q Consensus 224 ~~l~~lgL~~~-~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~--lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tv 300 (723)
+.++.+||... .++.+ .+|||||||||+|||+|+.+|+ +|||||||+|||+.....++++|++++++|.||
T Consensus 446 ~~L~~vgL~~l~l~r~~------~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tv 519 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSA------TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTV 519 (916)
T ss_dssp HHHHTTTCTTCBTTSBG------GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEE
T ss_pred HHHHHcCCccccccCCc------ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 67888898754 45544 4999999999999999999887 999999999999999999999999999889999
Q ss_pred EEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChhHHHH
Q 004929 301 LFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (723)
Q Consensus 301 i~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (723)
|+++|+. ..+ ..||+|++| ++|++++.|+++++.+
T Consensus 520 ivVtHd~-~~~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 520 IVVEHDE-EVI-RNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp EEECCCH-HHH-HTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred EEEeCCH-HHH-HhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 9988875 444 559999999 8999999999998764
No 82
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.79 E-value=6.5e-19 Score=190.41 Aligned_cols=80 Identities=21% Similarity=0.264 Sum_probs=71.1
Q ss_pred CCCCCCHHHHH------HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCE
Q 004929 244 YMKGLPCGERR------RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (723)
Q Consensus 244 ~~~~LSGGerq------Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (723)
.+..||||||| |+++|++|+.+|++|||||||+|||+..+..+++.|+++.++|.|||+++|++ ++.+.||+
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~ 322 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADH 322 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCE
Confidence 45789999999 67778888889999999999999999999999999999988889999998884 57889999
Q ss_pred EEEEe--CCe
Q 004929 318 ICLLS--NGN 325 (723)
Q Consensus 318 v~vL~--~G~ 325 (723)
+++|. +|.
T Consensus 323 ~~~l~~~~g~ 332 (339)
T 3qkt_A 323 VIRISLENGS 332 (339)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEecCCc
Confidence 99985 554
No 83
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.79 E-value=6.1e-23 Score=219.43 Aligned_cols=123 Identities=12% Similarity=0.047 Sum_probs=97.4
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC
Q 004929 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLP 212 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~ 212 (723)
+++|+++||+||||||||||+++|+|++++.. |. +.+++|+|++.+++. |++||+.+......+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~---G~------------~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~~ 150 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWD---HH------------PRVDLVTTDGFLYPN-AELQRRNLMHRKGFP 150 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTST---TC------------CCEEEEEGGGGBCCH-HHHHHTTCTTCTTSG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccC---CC------------CeEEEEecCccCCcc-cHHHHHHHHHhcCCC
Confidence 78999999999999999999999999987742 32 458999999999888 999998542111111
Q ss_pred CccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 004929 213 GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280 (723)
Q Consensus 213 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~ 280 (723)
.....+.+.+.++.++ .+..+.. +..|||||+||+++|++++.+|+|||+|||++.+|+
T Consensus 151 --~~~d~~~~~~~L~~l~-~~~~~~~------~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 151 --ESYNRRALMRFVTSVK-SGSDYAC------APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp --GGBCHHHHHHHHHHHH-TTCSCEE------EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred --hHHHHHHHHHHHHHhC-CCcccCC------cccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 1123456778888887 4333333 348999999999999999999999999999999986
No 84
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.78 E-value=1.4e-19 Score=206.93 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=119.4
Q ss_pred eeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHh
Q 004929 130 NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALL 209 (723)
Q Consensus 130 s~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~ 209 (723)
++.+.+|++++|+||||||||||+++++|..++. |+ +.+.+++|+.. ..+.++. .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~----G~------------~vi~~~~ee~~----~~l~~~~---~-- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN----KE------------RAILFAYEESR----AQLLRNA---Y-- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----TC------------CEEEEESSSCH----HHHHHHH---H--
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC----CC------------CEEEEEEeCCH----HHHHHHH---H--
Confidence 5689999999999999999999999999987663 32 12345555531 1222222 1
Q ss_pred cCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH-----HHH
Q 004929 210 QLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV-----SAL 284 (723)
Q Consensus 210 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~-----~~~ 284 (723)
+.... +++ +...|+.+..+. .+..|||||+||+++|+++..+|++|++| ||+|||.. .+.
T Consensus 330 ~~g~~-------~~~-~~~~g~~~~~~~------~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~ 394 (525)
T 1tf7_A 330 SWGMD-------FEE-MERQNLLKIVCA------YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQ 394 (525)
T ss_dssp TTSCC-------HHH-HHHTTSEEECCC------CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHH
T ss_pred HcCCC-------HHH-HHhCCCEEEEEe------ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHH
Confidence 11111 122 234566555444 45589999999999999999999999999 99999999 999
Q ss_pred HHHHHHHHHHHcCCEEEEEEeCCh---------HHHHhcCCEEEEEeCCe
Q 004929 285 LMMVTLKKLASTGCTLLFTINQSS---------TEVFGLFDRICLLSNGN 325 (723)
Q Consensus 285 ~i~~~L~~l~~~g~tvi~t~h~~~---------~~i~~~~D~v~vL~~G~ 325 (723)
.+.++++.+++.|.|||+++|+.. ..+..+||+|++|++|+
T Consensus 395 ~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 395 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 999999999989999999999871 35678999999999887
No 85
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.78 E-value=2.7e-20 Score=196.93 Aligned_cols=183 Identities=14% Similarity=0.074 Sum_probs=116.0
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEeCCC--CCceEEEEcCCCccCCCCCH
Q 004929 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG-EVFVNGAKSEM--PYGSYGFVERETTLIGSLTV 199 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G-~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lTV 199 (723)
..+|+++++.+++|++++|+||||||||||++.|+|...+.. | .|.+.+..... ..+++..+.++.. +++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~---G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM---GKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTS---CCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc---CCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 468999999999999999999999999999999999987653 6 56543321110 0011222222211 122
Q ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHH-HHHHHHHHHHhhCCcEEEEeCCCC--
Q 004929 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE-RRRVRIARELVMRPHVLFIDEPLY-- 276 (723)
Q Consensus 200 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe-rqRv~IA~aL~~~P~lLlLDEPTs-- 276 (723)
.+++.... +. ..+..+.++++++..++. . .+.+..+|.+| +||+. |+++..+|++||+||||+
T Consensus 95 ~~~l~~~~-~~----~~~~~~~~~~~l~~~~l~--i------~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 95 SDSLKREI-IE----NGKFDQWFDELFGNDTFH--L------YDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp CHHHHHHH-HH----HTHHHHHHHHHHSSSCEE--E------ECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred ccccccCC-CC----HHHHHHHHHHHhccCCEE--E------ECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 23332210 00 001122333333222221 1 11234789999 66666 999999999999999999
Q ss_pred -C---CCH-HHHHHHHHHHHHHHH-cCCEEEEEEeCC-hH--------------------HHHhcCCEEEEEeCCeE
Q 004929 277 -H---LDS-VSALLMMVTLKKLAS-TGCTLLFTINQS-ST--------------------EVFGLFDRICLLSNGNT 326 (723)
Q Consensus 277 -g---LD~-~~~~~i~~~L~~l~~-~g~tvi~t~h~~-~~--------------------~i~~~~D~v~vL~~G~i 326 (723)
+ +|. .....+++.|+++++ .|.|||+++|.. .. .+.++||+|++|++|+.
T Consensus 161 ~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 161 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 565 677889999999985 499999998885 13 67889999999998875
No 86
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.77 E-value=8.6e-21 Score=195.61 Aligned_cols=178 Identities=11% Similarity=0.053 Sum_probs=108.3
Q ss_pred cccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHH
Q 004929 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVR 200 (723)
Q Consensus 121 ~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~ 200 (723)
+++.+|+||||.+++|+++||+||||||||||+++|+|++ |.+.++ ...+.++|++|++ +++.+|+.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-----~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-----QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-----GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-----ccCCceEEEeCCc-CccccCHh
Confidence 4567999999999999999999999999999999999975 223233 1235689999985 77789999
Q ss_pred HHHHHHHHhcCCCccc-hHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 004929 201 EYLYYSALLQLPGFFC-QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279 (723)
Q Consensus 201 E~l~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD 279 (723)
|++.+........... ...+.+.+.++.+ .+..+. .+..||+||+||+.+ ++++.+|+++|+|||...+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~------~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~ 147 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTV------EVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYS 147 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCE------EECCEETTTTEECSS-CEEECCCSEEEEECTTTTTS
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCCe------ecccccccccCccCc-eEEecCCCEEEEeCcccccc
Confidence 9987643221111111 1233445555543 233333 345899999999988 58888999999999998888
Q ss_pred HHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHH
Q 004929 280 SVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (723)
Q Consensus 280 ~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (723)
.. +.++ .+.+|++++|........+++++ ++|+ +.+++.+.
T Consensus 148 ~~--------l~~~--~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~~ 188 (245)
T 2jeo_A 148 QE--------IRDM--FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILTQ 188 (245)
T ss_dssp HH--------HHTT--CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHHH
T ss_pred HH--------HHHh--cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHHH
Confidence 64 2222 37788888886443333344444 5564 45555543
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.76 E-value=2.1e-21 Score=222.05 Aligned_cols=167 Identities=16% Similarity=0.129 Sum_probs=122.4
Q ss_pred ccceeeceee-EEeCCcEEEEECCCCCcHHHHHHH--HHcCCCCCCCceeEEEECCEeCCC----CCceEEEEcCCCccC
Q 004929 122 SDKVVKSSNG-YALPGTMTVIMGPAKSGKSTLLRA--IAGRLPHSARMYGEVFVNGAKSEM----PYGSYGFVERETTLI 194 (723)
Q Consensus 122 ~~~iL~~vs~-~v~~Ge~~aIlGpsGsGKSTLL~~--L~G~~~~~~~~~G~I~i~G~~~~~----~~~~~~yv~Q~~~l~ 194 (723)
..++|++|++ .+++||+++|+||||||||||+++ ++|+.+|+. |.|.++|++... ..+.+||++|+....
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~---g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~ 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDE---PGVFVTFEETPQDIIKNARSFGWDLAKLVDE 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCC---CEEEEESSSCHHHHHHHHGGGTCCHHHHHHT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCC---CEEEEEEeCCHHHHHHHHHHcCCChHHhhcc
Confidence 4579999999 999999999999999999999999 789988764 999999975311 123578888865422
Q ss_pred CCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 004929 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274 (723)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEP 274 (723)
+. +.+ ...... + ...++++.++|.+..++.+. .||||| |+++++|||
T Consensus 101 ~~------l~~---~~~~~~--~---~~~~~l~~~~l~~~~~~~~~------~LS~g~-------------~~~lilDe~ 147 (525)
T 1tf7_A 101 GK------LFI---LDASPD--P---EGQEVVGGFDLSALIERINY------AIQKYR-------------ARRVSIDSV 147 (525)
T ss_dssp TS------EEE---EECCCC--S---SCCSCCSSHHHHHHHHHHHH------HHHHHT-------------CSEEEEECS
T ss_pred Cc------EEE---EecCcc--c---chhhhhcccCHHHHHHHHHH------HHHHcC-------------CCEEEECCH
Confidence 11 100 010000 0 01223444555556665543 677775 789999999
Q ss_pred CC-----CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHH--------HHhcCCEEEEEeCC
Q 004929 275 LY-----HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE--------VFGLFDRICLLSNG 324 (723)
Q Consensus 275 Ts-----gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~--------i~~~~D~v~vL~~G 324 (723)
|+ +||+..+..+.++++.+++.|+|||+++|+.... +..+||+|++|++|
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 98 4699999999999999998899999999998532 34569999999983
No 88
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.76 E-value=6.6e-20 Score=222.73 Aligned_cols=172 Identities=19% Similarity=0.160 Sum_probs=119.6
Q ss_pred eEEEEe-----EEEEEecccccccceeeceeeEEeC-------CcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 004929 105 SVVWKD-----LTVTIKGKRRYSDKVVKSSNGYALP-------GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172 (723)
Q Consensus 105 ~l~~~~-----ls~~~~~~~~~~~~iL~~vs~~v~~-------Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i 172 (723)
.+.++| |++.+. .++.+++|+++.+.+ |++++|+||||||||||||+| |++.+-
T Consensus 750 ~l~i~~~rHP~l~~~~~----~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--------- 815 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFF----GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM--------- 815 (1022)
T ss_dssp CEEEEEECCCC----------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH---------
T ss_pred eEEEEeccccEEEEEec----CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH---------
Confidence 588999 887763 235799999999987 999999999999999999999 987531
Q ss_pred CCEeCCCCCceEE-EEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHH
Q 004929 173 NGAKSEMPYGSYG-FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (723)
Q Consensus 173 ~G~~~~~~~~~~~-yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGG 251 (723)
.++| ||||+.. .+||.|++. ..+|+.+..... ...+|+|
T Consensus 816 ---------aqiG~~Vpq~~~---~l~v~d~I~----------------------~rig~~d~~~~~------~stf~~e 855 (1022)
T 2o8b_B 816 ---------AQMGCYVPAEVC---RLTPIDRVF----------------------TRLGASDRIMSG------ESTFFVE 855 (1022)
T ss_dssp ---------HTTTCCEESSEE---EECCCSBEE----------------------EECC---------------CHHHHH
T ss_pred ---------hheeEEeccCcC---CCCHHHHHH----------------------HHcCCHHHHhhc------hhhhHHH
Confidence 2234 8888753 345555441 012222222211 1256666
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH-HHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEE--
Q 004929 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSA-LLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTL-- 327 (723)
Q Consensus 252 erqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~-~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv-- 327 (723)
++ ++++|++++.+|+++||||||+|+|+... ..++..|+.++++ |.++|+++|++ +.+..++|++.++ +|++.
T Consensus 856 m~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~~v~-~g~~~~~ 932 (1022)
T 2o8b_B 856 LS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNVAVR-LGHMACM 932 (1022)
T ss_dssp HH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCSSEE-EEEEEEC
T ss_pred HH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcceee-cCeEEEE
Confidence 66 49999999999999999999999999884 5578999999876 89999988886 4677789999887 58887
Q ss_pred EEeChh
Q 004929 328 FFGETL 333 (723)
Q Consensus 328 ~~G~~~ 333 (723)
+.|+++
T Consensus 933 ~~~~~~ 938 (1022)
T 2o8b_B 933 VENECE 938 (1022)
T ss_dssp ------
T ss_pred EecCcc
Confidence 556544
No 89
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.75 E-value=1.7e-18 Score=206.05 Aligned_cols=133 Identities=20% Similarity=0.253 Sum_probs=109.9
Q ss_pred CCCCHHHHHHHHHHhcCCCccc--------hHHHHHHHHHHHcCCchH-hhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 004929 195 GSLTVREYLYYSALLQLPGFFC--------QRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (723)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~--------~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~ 265 (723)
..+||.|++.|...+.++.... +..+++ +.++.+||... .++.+ .+|||||||||+||++|..+
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~------~tLSGGEkQRV~LA~aL~~~ 522 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSA------GTLSGGEAQRIRLATQIGSR 522 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBG------GGCCHHHHHHHHHHHHHTTC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCcc------ccCCHHHHHHHHHHHHHhhC
Confidence 4689999999977766543111 123344 45888999764 56654 49999999999999999998
Q ss_pred C--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChhHHH
Q 004929 266 P--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACL 336 (723)
Q Consensus 266 P--~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~ 336 (723)
| ++|||||||+|||+.....+++.|++|++.|.|||++.|+. +.+ ..||+|++| ++|++++.|+++++.
T Consensus 523 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl-~~i-~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 523 LTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE-DTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp CCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH-HHH-HSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHH-HhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 5 99999999999999999999999999998999999988886 444 579999999 799999999998764
No 90
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.75 E-value=5.7e-19 Score=209.67 Aligned_cols=171 Identities=16% Similarity=0.130 Sum_probs=126.3
Q ss_pred CCCCcHHHHHHHHHcCCCCC---C---CceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhc-------
Q 004929 144 PAKSGKSTLLRAIAGRLPHS---A---RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ------- 210 (723)
Q Consensus 144 psGsGKSTLL~~L~G~~~~~---~---~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~------- 210 (723)
.|..||+||.+.+....-|. . ..+|+|.++|+++.. ...+++.|.+.|...+.
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~--------------~~~~~v~e~~~~~~~~~~~~~~~~ 335 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITE--------------LSRLPLARVSELLRPYAEEREPGH 335 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHH--------------HHHSBHHHHHHHHHHHHTTCSSCS
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHH--------------HhhcCHHHHHHHHHhhhhhhhhcc
Confidence 45679999999887743221 0 134788888875321 01245555555444331
Q ss_pred -----CCCc--------cchHHHHHHHHHHHcCCchH-hhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC--cEEEEeCC
Q 004929 211 -----LPGF--------FCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMRP--HVLFIDEP 274 (723)
Q Consensus 211 -----~~~~--------~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P--~lLlLDEP 274 (723)
+... ..+..++++ .++.+||.+. .++.+ ..|||||||||.||++|+.+| ++|+||||
T Consensus 336 ~~~~~~~~~~~~i~~~i~~ei~~rl~-~L~~vGL~~l~l~r~~------~tLSGGe~QRV~LA~aL~~~p~~~llILDEP 408 (842)
T 2vf7_A 336 AERVKNRPEQAIALQRMAADLVKRLD-VLLHLGLGYLGLDRST------PTLSPGELQRLRLATQLYSNLFGVVYVLDEP 408 (842)
T ss_dssp TTSSSSCSSHHHHHHHHHHHHHHHHH-HHHHTTCTTSBTTCBG------GGSCHHHHHHHHHHHHTTTCCCSCEEEEECT
T ss_pred cchhhcchhhHHHHHHHHHHHHHHHH-HHHhCCCCcCCccCCc------CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCc
Confidence 0000 011334555 6788999865 56644 499999999999999999999 59999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChhHHHH
Q 004929 275 LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (723)
Q Consensus 275 TsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (723)
|+|||+.....+.++|++|++.|.|||++.|+. + +.+.||+|++| ++|++++.|+++++.+
T Consensus 409 T~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl-~-~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 409 SAGLHPADTEALLSALENLKRGGNSLFVVEHDL-D-VIRRADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp TTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH-H-HHTTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH-H-HHHhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 999999999999999999998999999988876 3 55789999999 7999999999987643
No 91
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.74 E-value=2e-18 Score=207.39 Aligned_cols=152 Identities=16% Similarity=0.161 Sum_probs=113.1
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHH--------HcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCcc
Q 004929 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--------AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L--------~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l 193 (723)
.+.+++|+++.+++|++++|+||||||||||||++ .|..-|.. +.. ++.+ +.+
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~---~~~-------------~~~~---d~i 708 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCE---SAE-------------VSIV---DCI 708 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEE---EEE-------------EECC---SEE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccc---ccc-------------chHH---HHH
Confidence 45799999999999999999999999999999999 44333321 100 1100 001
Q ss_pred CCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH--hhCCcEEEE
Q 004929 194 IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL--VMRPHVLFI 271 (723)
Q Consensus 194 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL--~~~P~lLlL 271 (723)
+..+|+.+. ..+++|+|+++++.+|++| +.+|+++||
T Consensus 709 --------------------------------~~~ig~~d~---------l~~~lStf~~e~~~~a~il~~a~~~sLlLL 747 (934)
T 3thx_A 709 --------------------------------LARVGAGDS---------QLKGVSTFMAEMLETASILRSATKDSLIII 747 (934)
T ss_dssp --------------------------------EEECC------------------CHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred --------------------------------HHhcCchhh---------HHHhHhhhHHHHHHHHHHHHhccCCcEEEE
Confidence 111222211 1237899999999999988 999999999
Q ss_pred eCCCCCCCHHHHHHH-HHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004929 272 DEPLYHLDSVSALLM-MVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 272 DEPTsgLD~~~~~~i-~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
||||+|||+.....+ ..+++.+++ .|.++|+++|.. ++..++|++..+.+|++...++.+++
T Consensus 748 DEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp ESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEecCCcE
Confidence 999999999999888 677788876 589999999984 56789999999999999998887664
No 92
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.74 E-value=2.4e-20 Score=202.07 Aligned_cols=185 Identities=15% Similarity=0.124 Sum_probs=132.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~------ 178 (723)
.++.+++++.|. .+.++|+++ +.+.+||+++|+||||||||||+++|+|+.+++. |.|.+.|++..
T Consensus 45 ~i~~~~l~~~~~----tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~---g~i~~~G~~~~ev~~~i 116 (347)
T 2obl_A 45 PLLRQVIDQPFI----LGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADI---IVLALIGERGREVNEFL 116 (347)
T ss_dssp STTCCCCCSEEC----CSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSE---EEEEEESCCHHHHHHHH
T ss_pred CeeecccceecC----CCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCE---EEEEEecccHHHHHHHH
Confidence 356778887774 135799999 9999999999999999999999999999998874 99999886410
Q ss_pred -C-----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchH-hhh----hhcCCCCCCC
Q 004929 179 -M-----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-ANK----LIGGHCYMKG 247 (723)
Q Consensus 179 -~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~----~ig~~~~~~~ 247 (723)
. ..+.+.++.|.+. +..+.+. ..+..+.+.++ .+. ..- .+.+..
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~-----~~~~r~~-------------------~~~~~~~~ae~~~~~~~~vl~~-ld~~~~ 171 (347)
T 2obl_A 117 ALLPQSTLSKCVLVVTTSDR-----PALERMK-------------------AAFTATTIAEYFRDQGKNVLLM-MDSVTR 171 (347)
T ss_dssp TTSCHHHHTTEEEEEECTTS-----CHHHHHH-------------------HHHHHHHHHHHHHTTTCEEEEE-EETHHH
T ss_pred HhhhhhhhhceEEEEECCCC-----CHHHHHH-------------------HHHHHHHHHHHHHhccccHHHH-HhhHHH
Confidence 0 0123566665432 1222221 11111111111 110 000 023458
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH--cCC-----EEEEEEeCChHHHHhcCCEEEE
Q 004929 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS--TGC-----TLLFTINQSSTEVFGLFDRICL 320 (723)
Q Consensus 248 LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~--~g~-----tvi~t~h~~~~~i~~~~D~v~v 320 (723)
||+|| |||++| +.+|++ |+|||+.....+.++++++.+ +|. ||++++|+.. ..+||++++
T Consensus 172 lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~ 238 (347)
T 2obl_A 172 YARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRS 238 (347)
T ss_dssp HHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHH
T ss_pred HHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEE
Confidence 99999 899999 688887 999999999999999999974 476 7888777764 567999999
Q ss_pred EeCCeEEEEeChhHH
Q 004929 321 LSNGNTLFFGETLAC 335 (723)
Q Consensus 321 L~~G~iv~~G~~~~~ 335 (723)
|.+|+++..|+.++.
T Consensus 239 i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 239 ILDGHIVLTRELAEE 253 (347)
T ss_dssp HCSEEEEBCHHHHTT
T ss_pred eeCcEEEEeCCHHHc
Confidence 999999999887664
No 93
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.74 E-value=1.2e-19 Score=185.75 Aligned_cols=167 Identities=14% Similarity=0.077 Sum_probs=102.6
Q ss_pred eeece-eeEEeCCcEEEEECCCCCcHHHHHHHHH--cCCCCCCCceeEEEECCEeCCC----CCceEEEEcCCCccCCCC
Q 004929 125 VVKSS-NGYALPGTMTVIMGPAKSGKSTLLRAIA--GRLPHSARMYGEVFVNGAKSEM----PYGSYGFVERETTLIGSL 197 (723)
Q Consensus 125 iL~~v-s~~v~~Ge~~aIlGpsGsGKSTLL~~L~--G~~~~~~~~~G~I~i~G~~~~~----~~~~~~yv~Q~~~l~~~l 197 (723)
.|+++ .+-+++|++++|+||||||||||+++|+ |+.+++. |.+.+++..... ..+.+++++|+....+.+
T Consensus 18 ~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 94 (251)
T 2ehv_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGE---PGVFVTLEERARDLRREMASFGWDFEKYEKEGKI 94 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCC---CEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSE
T ss_pred hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC---eEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCE
Confidence 34444 2478999999999999999999999999 6634432 667776643110 012234444443333333
Q ss_pred CHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 004929 198 TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYH 277 (723)
Q Consensus 198 TV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsg 277 (723)
++.++....... ........ ....+-++..+...+..-..+|+++++||||++
T Consensus 95 ~~~~~~~~~~~~--------~~~~~~~~-------------------~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ 147 (251)
T 2ehv_A 95 AIVDGVSSVVGL--------PSEEKFVL-------------------EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSI 147 (251)
T ss_dssp EEEC----------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHH
T ss_pred EEEEcccccccc--------ccccceec-------------------cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHH
Confidence 333322110000 00000000 012334454444444445689999999999999
Q ss_pred CC-----HHHHHHHHHHHHHHHHcCCEEEEEEeCChHHH---------HhcC-CEEEEEe
Q 004929 278 LD-----SVSALLMMVTLKKLASTGCTLLFTINQSSTEV---------FGLF-DRICLLS 322 (723)
Q Consensus 278 LD-----~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i---------~~~~-D~v~vL~ 322 (723)
|| +..+..+.++++.+++.|+|||+++|... ++ ..+| |+|++|+
T Consensus 148 ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~-~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 148 ALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD-PQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC-CCcccccccChhhEeeeEEEEEe
Confidence 98 67777799999999988999999988875 44 5788 9999995
No 94
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.74 E-value=3.1e-18 Score=204.49 Aligned_cols=135 Identities=19% Similarity=0.221 Sum_probs=108.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCcc--------chHHHHHHHHHHHcCCchH-hhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 004929 194 IGSLTVREYLYYSALLQLPGFF--------CQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (723)
Q Consensus 194 ~~~lTV~E~l~~~~~~~~~~~~--------~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~~LSGGerqRv~IA~aL~~ 264 (723)
+..+||.|.+.|...+.++... .+..+++ +.++.+||... .++.+ ..|||||||||+||++|..
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~------~tLSGGEkQRV~LA~aL~~ 538 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAA------ATLSGGEAQRIRLATQIGS 538 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBG------GGCCHHHHHHHHHHHHHTT
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCc------ccCCHHHHHHHHHHHHHhh
Confidence 3468999999885444443311 0123344 34788898764 56644 4999999999999999999
Q ss_pred C--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChhHHH
Q 004929 265 R--PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACL 336 (723)
Q Consensus 265 ~--P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~ 336 (723)
+ |++|||||||+|||+.....+++.|++|++.|.|||++.|+. +. ...||+|++| ++|++++.|+++++.
T Consensus 539 ~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl-~~-i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~ 616 (993)
T 2ygr_A 539 GLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDE-DT-IEHADWIVDIGPGAGEHGGRIVHSGPYDELL 616 (993)
T ss_dssp CCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH-HHTCSEEEEECSSSGGGCCSCCEEECHHHHH
T ss_pred CCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCH-HH-HHhCCEEEEecCccccCCCEEEEeeCHHHhh
Confidence 9 589999999999999999999999999999999999988886 34 4579999999 799999999999876
Q ss_pred H
Q 004929 337 Q 337 (723)
Q Consensus 337 ~ 337 (723)
.
T Consensus 617 ~ 617 (993)
T 2ygr_A 617 R 617 (993)
T ss_dssp H
T ss_pred h
Confidence 4
No 95
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.73 E-value=8.6e-18 Score=160.15 Aligned_cols=81 Identities=20% Similarity=0.242 Sum_probs=72.9
Q ss_pred CCCCCCHHHHHHHHHH------HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCE
Q 004929 244 YMKGLPCGERRRVRIA------RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (723)
Q Consensus 244 ~~~~LSGGerqRv~IA------~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (723)
.+..||||||||++|| |+|+.+|++|||||||+|||+.++..+.+.|+++.++|.|||+++|++ ++.++||+
T Consensus 54 ~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~ 131 (148)
T 1f2t_B 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADH 131 (148)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSE
T ss_pred ChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCE
Confidence 5569999999999876 899999999999999999999999999999999987799999999986 46789999
Q ss_pred EEEE--eCCeE
Q 004929 318 ICLL--SNGNT 326 (723)
Q Consensus 318 v~vL--~~G~i 326 (723)
+++| .+|..
T Consensus 132 ii~l~~~~g~s 142 (148)
T 1f2t_B 132 VIRISLENGSS 142 (148)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEcCCCeE
Confidence 9999 46643
No 96
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.72 E-value=5.9e-19 Score=178.37 Aligned_cols=154 Identities=14% Similarity=0.137 Sum_probs=93.2
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC----CceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHH
Q 004929 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA----RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYS 206 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~----~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~ 206 (723)
+-+++||+++|+||||||||||+++|+|...+.. ...|.+.++++.. ...+.++++.|+..+++. |+.||+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~-~~~~~i~~~~~~~~~~~~-~~~~~~--- 94 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT-FRPERIREIAQNRGLDPD-EVLKHI--- 94 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC-CCHHHHHHHHHHTTSCHH-HHHHTE---
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC-CCHHHHHHHHHHcCCCHH-HHhhcE---
Confidence 5788999999999999999999999999544311 0123555554321 000111112221111111 111111
Q ss_pred HHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHH-HHHHHHHHHhh-------CCcEEEEeCCCCCC
Q 004929 207 ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER-RRVRIARELVM-------RPHVLFIDEPLYHL 278 (723)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGer-qRv~IA~aL~~-------~P~lLlLDEPTsgL 278 (723)
. .....+++++ +++..+++++. +|+++++||||++|
T Consensus 95 -----------------------~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l 138 (231)
T 4a74_A 95 -----------------------Y-------------VARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 138 (231)
T ss_dssp -----------------------E-------------EEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHH
T ss_pred -----------------------E-------------EEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHh
Confidence 0 1123344433 34666666666 99999999999999
Q ss_pred CHH-------H-----HHHHHHHHHHHHH-cCCEEEEEEeCCh---HHHHhcCCEEEEEeCCe
Q 004929 279 DSV-------S-----ALLMMVTLKKLAS-TGCTLLFTINQSS---TEVFGLFDRICLLSNGN 325 (723)
Q Consensus 279 D~~-------~-----~~~i~~~L~~l~~-~g~tvi~t~h~~~---~~i~~~~D~v~vL~~G~ 325 (723)
|+. . ..++++.|+++++ .|.|||+++|... ..+.+.+|++++|++|+
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 139 RSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred ccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 984 2 2378888888874 5999999888432 24778999999998753
No 97
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.71 E-value=1.3e-18 Score=181.27 Aligned_cols=133 Identities=20% Similarity=0.232 Sum_probs=97.8
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHH
Q 004929 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (723)
.+|+++| +++|++++|+||||||||||+++|+|+++|+ .+|+|.++|.++. |++|+..-+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~-------~~~~~~~~~--------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-------YVFKHKKSI--------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCC-------SCCCCSSSE---------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcce-------eecCCccee---------
Confidence 4899999 8999999999999999999999999998764 1399999886542 222221000
Q ss_pred HHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 004929 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (723)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~ 283 (723)
..+. .+|+.. ..+ |++||++|..+|++|++|||| |+.+.
T Consensus 75 -----------v~q~---------~~gl~~------------~~l------~~~la~aL~~~p~illlDEp~---D~~~~ 113 (261)
T 2eyu_A 75 -----------VNQR---------EVGEDT------------KSF------ADALRAALREDPDVIFVGEMR---DLETV 113 (261)
T ss_dssp -----------EEEE---------EBTTTB------------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHH
T ss_pred -----------eeHH---------HhCCCH------------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHH
Confidence 0000 122210 122 899999999999999999999 99887
Q ss_pred HHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 004929 284 LLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (723)
Q Consensus 284 ~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (723)
..++ +. ++.|.+|++++|... +...+||+++|..
T Consensus 114 ~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 114 ETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 6544 33 457999999999874 5678999888754
No 98
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.69 E-value=4.9e-20 Score=184.78 Aligned_cols=145 Identities=19% Similarity=0.157 Sum_probs=113.3
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccC--CCCCHHHHHHHHHHhc
Q 004929 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI--GSLTVREYLYYSALLQ 210 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~--~~lTV~E~l~~~~~~~ 210 (723)
.++|++++|+||||||||||+++|+|++.+ .++|++|++.++ ..+|+++++.+. ..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------~i~~v~~d~~~~~~~~~~~~~~~~~~--~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------RVALLPMDHYYKDLGHLPLEERLRVN--YD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------GEEEEEGGGCBCCCTTSCHHHHHHSC--TT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------CeEEEecCccccCcccccHHHhcCCC--CC
Confidence 358999999999999999999999998642 478999988776 567998886432 11
Q ss_pred CCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHH----HHHHHHHHHHhhCCcEEEEeCCCCC-------CC
Q 004929 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE----RRRVRIARELVMRPHVLFIDEPLYH-------LD 279 (723)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe----rqRv~IA~aL~~~P~lLlLDEPTsg-------LD 279 (723)
.+ .....+++.+.++.+++.+..+.. +..+|+|| +||+++|++++.+|.++++||||++ ||
T Consensus 61 ~~--~~~~~~~~~~~l~~~~~~~~~~~~------~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld 132 (211)
T 3asz_A 61 HP--DAFDLALYLEHAQALLRGLPVEMP------VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVD 132 (211)
T ss_dssp SG--GGBCHHHHHHHHHHHHTTCCEEEC------CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEE
T ss_pred Ch--hhhhHHHHHHHHHHHHcCCCcCCC------cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEe
Confidence 11 112345677888888876655543 34799996 4789999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHH-HcCCEEEEEEeCC
Q 004929 280 SVSALLMMVTLKKLA-STGCTLLFTINQS 307 (723)
Q Consensus 280 ~~~~~~i~~~L~~l~-~~g~tvi~t~h~~ 307 (723)
+.....+.+.+++.. +.|.|++.++|+.
T Consensus 133 ~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 133 ADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999998864 5688888777864
No 99
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.68 E-value=2.7e-18 Score=182.68 Aligned_cols=147 Identities=12% Similarity=0.086 Sum_probs=108.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------CceEEEEcCCCccCCCCCHHHHH
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----------YGSYGFVERETTLIGSLTVREYL 203 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~-----------~~~~~yv~Q~~~l~~~lTV~E~l 203 (723)
+|++++|+||||||||||+++|+|+++|++ |+|.++|.+.... +..++|++|+..++|.+|++|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~---g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLG---KKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTT---CCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 699999999999999999999999998875 9999999875321 13589999999999999999999
Q ss_pred HHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 004929 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (723)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~ 283 (723)
.++...... ..+++..|+.+..+.. ++..++||++|||+|+.+|+.++| .||+.+.
T Consensus 178 ~~~~~~~~d----------~~llDt~G~~~~~~~~---------~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 178 QAMKARGYD----------LLFVDTAGRLHTKHNL---------MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHHTCS----------EEEECCCCCCTTCHHH---------HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHHhCCCC----------EEEecCCCCCCchHHH---------HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 765321100 0123334444333332 344458999999999999995444 5565556
Q ss_pred HHHHHHHHHHHH-cCCEEEEEEeCCh
Q 004929 284 LLMMVTLKKLAS-TGCTLLFTINQSS 308 (723)
Q Consensus 284 ~~i~~~L~~l~~-~g~tvi~t~h~~~ 308 (723)
.++++.++++.+ .|.|+|+++|.+.
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 667777888875 4899999899763
No 100
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.68 E-value=2.9e-17 Score=196.88 Aligned_cols=145 Identities=15% Similarity=0.133 Sum_probs=99.7
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 004929 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (723)
++.+++||++.+++|++++|+||||||||||||+|++..-... .| .........++ .-+.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq--~g------~~vpa~~~~i~---~~d~i~~~ig~~- 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ--IG------SYVPAEEATIG---IVDGIFTRMGAA- 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH--HT------CCBSSSEEEEE---CCSEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh--cC------ccccchhhhhh---HHHHHHHhCChH-
Confidence 4679999999999999999999999999999999986421100 01 00000000111 111122222222
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 004929 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281 (723)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~ 281 (723)
+.... ....+|+||+|++.|+++ +.+|+++||||||+|||+.
T Consensus 727 -------------------------------d~l~~------~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~ 768 (918)
T 3thx_B 727 -------------------------------DNIYK------GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTH 768 (918)
T ss_dssp --------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHH
T ss_pred -------------------------------HHHHH------hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHH
Confidence 22222 123789999999999999 8999999999999999999
Q ss_pred HHHHHH-HHHHHHHH-cCCEEEEEEeCChHHHHhcCCEE
Q 004929 282 SALLMM-VTLKKLAS-TGCTLLFTINQSSTEVFGLFDRI 318 (723)
Q Consensus 282 ~~~~i~-~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v 318 (723)
....+. .+++.+++ .|.|+|+++|++ ++.+++|+.
T Consensus 769 ~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~ 805 (918)
T 3thx_B 769 DGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhc
Confidence 999997 78888875 699999998885 455666654
No 101
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.68 E-value=6.3e-18 Score=199.70 Aligned_cols=146 Identities=19% Similarity=0.151 Sum_probs=105.2
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHH
Q 004929 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVR 200 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~-~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~ 200 (723)
++.+++|+|+. |++++|+||||||||||||+|+|+.. +.. |.+. ......+++++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~---G~~v------pa~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQV---GSFV------PAEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTT---TCCB------SSSEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhccc---Ccee------ehhccceeeHHH---hhccCCHH
Confidence 35789999998 99999999999999999999999863 332 5432 111234666655 55556666
Q ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH--hhCCcEEEEeCC---C
Q 004929 201 EYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL--VMRPHVLFIDEP---L 275 (723)
Q Consensus 201 E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL--~~~P~lLlLDEP---T 275 (723)
|++. .++|+|+++++.+|++| +.+|+++||||| |
T Consensus 630 d~l~-----------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGT 668 (765)
T 1ewq_A 630 DDLA-----------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGT 668 (765)
T ss_dssp ----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTS
T ss_pred HHHH-----------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCC
Confidence 5541 16899999999999999 999999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004929 276 YHLDSVSA-LLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 276 sgLD~~~~-~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
++||..+. ..+++.|++ .|.++|+++|+. +..+++ .-.+.++++....
T Consensus 669 s~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~--~l~~~~--~~~v~n~~~~~~~ 717 (765)
T 1ewq_A 669 SSLDGVAIATAVAEALHE---RRAYTLFATHYF--ELTALG--LPRLKNLHVAARE 717 (765)
T ss_dssp CHHHHHHHHHHHHHHHHH---HTCEEEEECCCH--HHHTCC--CTTEEEEEEEEEC
T ss_pred CCcCHHHHHHHHHHHHHh---CCCEEEEEeCCH--HHHHhh--hhcceEEEEEEEE
Confidence 99998875 567777766 588999988885 344555 2223445554443
No 102
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.66 E-value=7.7e-19 Score=186.81 Aligned_cols=161 Identities=16% Similarity=0.159 Sum_probs=84.1
Q ss_pred EeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC-CCCCCCceeEEEECCEeCCC--CCceEE
Q 004929 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR-LPHSARMYGEVFVNGAKSEM--PYGSYG 185 (723)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~-~~~~~~~~G~I~i~G~~~~~--~~~~~~ 185 (723)
+||++.+. ++.+++++++.+ +|+|+||+|||||+++|+|. ..+.. | |.++|.+... ..+.++
T Consensus 2 ~~l~~~~~-----~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~---g-i~~~g~~~~~t~~~~~~~ 66 (301)
T 2qnr_A 2 SNLPNQVH-----RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPER---V-ISGAAEKIERTVQIEAST 66 (301)
T ss_dssp ---------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CE
T ss_pred CCCcceEC-----CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCC---C-cccCCcccCCcceEeeEE
Confidence 35666663 457999999998 99999999999999999997 66653 7 8887765321 124578
Q ss_pred EEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 004929 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (723)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~ 265 (723)
+++|++.+...+||.|++-++..... .++...+++. +.+..+..+ +++|||||||+.+||+++
T Consensus 67 ~~~q~~~~~~~ltv~Dt~g~~~~~~~-------~e~~~~l~~~--l~~~~~~~~------~~~sgg~rqrv~~ara~~-- 129 (301)
T 2qnr_A 67 VEIEERGVKLRLTVVDTPGYGDAINC-------RDCFKTIISY--IDEQFERYL------HDESGLNRRHIIDNRVHC-- 129 (301)
T ss_dssp EEEC---CCEEEEEEEEC------------------CTTHHHH--HHHHHHHHH------HHHTSSCCTTCCCCCCCE--
T ss_pred EEecCCCcccCcchhhhhhhhhhcCc-------HHHHHHHHHH--HHHHHHHHH------HHhCHHhhhhhhhhhhhh--
Confidence 99998888888899988866432210 0001111111 123334433 489999999999998885
Q ss_pred CcEEEEeCCCCC-CCHHHHHHHHHHHHHHHHc-CCEEEEEEeCC
Q 004929 266 PHVLFIDEPLYH-LDSVSALLMMVTLKKLAST-GCTLLFTINQS 307 (723)
Q Consensus 266 P~lLlLDEPTsg-LD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~ 307 (723)
++++||||++ ||+... +.++++.++ +.++|++.|+.
T Consensus 130 --ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 130 --CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADT 167 (301)
T ss_dssp --EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGG
T ss_pred --eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCC
Confidence 9999999985 999873 666666643 66667666654
No 103
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.64 E-value=1.5e-16 Score=160.49 Aligned_cols=169 Identities=11% Similarity=-0.012 Sum_probs=109.1
Q ss_pred cceeeceee-EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 004929 123 DKVVKSSNG-YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (723)
Q Consensus 123 ~~iL~~vs~-~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (723)
.+.|+++.+ .+++|++++|+||||||||||++.|++...+.+ |.|.+.+.+ .+..+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~---~~v~~~~~~--------------------~~~~~ 65 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDG---DPCIYVTTE--------------------ESRDS 65 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHT---CCEEEEESS--------------------SCHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCC---CeEEEEEcc--------------------cCHHH
Confidence 457888885 899999999999999999999999998765432 555553321 11121
Q ss_pred HHHHHHHhcCCCccchHH--HHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEeCCCCC
Q 004929 202 YLYYSALLQLPGFFCQRK--NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPH--VLFIDEPLYH 277 (723)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~--~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~--lLlLDEPTsg 277 (723)
.................. ..++.....++ ... .....|.+|.++...+.+...+|+ ++++||||++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 66 IIRQAKQFNWDFEEYIEKKLIIIDALMKEKE-----DQW-----SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp HHHHHHHTTCCCGGGBTTTEEEEECCC---------CTT-----BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred HHHHHHHhcchHHHHhhCCEEEEeccccccC-----cee-----eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 111111111100000000 00000000000 000 112459999999888888888999 9999999988
Q ss_pred C--CHHHHHHHHHHHHHHHH-cCCEEEEEEeCCh-------HHHHhcCCEEEEEeCC
Q 004929 278 L--DSVSALLMMVTLKKLAS-TGCTLLFTINQSS-------TEVFGLFDRICLLSNG 324 (723)
Q Consensus 278 L--D~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~-------~~i~~~~D~v~vL~~G 324 (723)
+ |+....++++.|+++++ .|.|||+++|... ..+.++||+|++|++.
T Consensus 136 ~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 136 FLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 8 99999999999999974 5899999888762 3478899999999754
No 104
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.64 E-value=2.3e-17 Score=195.91 Aligned_cols=158 Identities=16% Similarity=0.092 Sum_probs=108.9
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 004929 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (723)
++.+++|+++. ++|++++|+||||||||||||+|+|+..... .| ..+......+++++| +++.+++.|
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q--~G------~~vpa~~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY--IG------SYVPAQKVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT--TT------CCBSSSEEEECCCCE---EEEEEC---
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh--cC------cccchhcccceeHHH---HHhhCCHHH
Confidence 45799999999 9999999999999999999999999742210 12 111111123444443 455556665
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 004929 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281 (723)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~ 281 (723)
++... ...+|+|++ +++.+..++.+|+++|||||++|+|+.
T Consensus 662 ~l~~~--------------------------------------~stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~ 702 (800)
T 1wb9_A 662 DLASG--------------------------------------RSTFMVEMT-ETANILHNATEYSLVLMDEIGRGTSTY 702 (800)
T ss_dssp ----------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSS
T ss_pred HHHhh--------------------------------------hhhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCChh
Confidence 55210 014566665 455555678999999999999999998
Q ss_pred HHHHH-HHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004929 282 SALLM-MVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 282 ~~~~i-~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
....+ ...++.+++ .|.++|+++|++ ++..++|++..+.+|++......
T Consensus 703 d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~~~~~~~~~ 753 (800)
T 1wb9_A 703 DGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANVHLDALEHG 753 (800)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEEEEEEEEET
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEEEEEEEEcC
Confidence 77775 788899987 499999999986 34578998877888888766543
No 105
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.64 E-value=5.1e-16 Score=162.84 Aligned_cols=149 Identities=14% Similarity=0.196 Sum_probs=103.8
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC
Q 004929 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLP 212 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~ 212 (723)
+.+|++++|+||||||||||++.|++.... |++. .|.+.. ....+.|+..++... .+.+.+. .+...
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~-----g~~~-~g~~~~-~~~~v~~~~~e~~~~---~~~~r~~---~~g~~ 93 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAG-----GPDL-LEVGEL-PTGPVIYLPAEDPPT---AIHHRLH---ALGAH 93 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHT-----CCCT-TCCCCC-CCCCEEEEESSSCHH---HHHHHHH---HHHTT
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHhc-----CCCc-CCCccC-CCccEEEEECCCCHH---HHHHHHH---HHHhh
Confidence 679999999999999999999999986543 5553 354321 124577877665320 1111111 11111
Q ss_pred CccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC--CCCHHH---HHHHH
Q 004929 213 GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY--HLDSVS---ALLMM 287 (723)
Q Consensus 213 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTs--gLD~~~---~~~i~ 287 (723)
......+++++.+++.+..++ .+..||+||+|++ ++++.+|+++++||||+ ++|... ..+++
T Consensus 94 ----~~~~~~~~~~~~l~l~~~~~~------~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~ 160 (279)
T 1nlf_A 94 ----LSAEERQAVADGLLIQPLIGS------LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVI 160 (279)
T ss_dssp ----SCHHHHHHHHHHEEECCCTTS------CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHH
T ss_pred ----cChhhhhhccCceEEeecCCC------CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHH
Confidence 012345677888887766544 3458999998875 68889999999999999 999754 48888
Q ss_pred HHHHHHH-HcCCEEEEEEeCC
Q 004929 288 VTLKKLA-STGCTLLFTINQS 307 (723)
Q Consensus 288 ~~L~~l~-~~g~tvi~t~h~~ 307 (723)
+.|++++ +.|+|||+++|..
T Consensus 161 ~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 161 GRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp HHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHcCCEEEEEecCC
Confidence 9999997 5699999987775
No 106
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.62 E-value=1.4e-17 Score=180.62 Aligned_cols=167 Identities=16% Similarity=0.163 Sum_probs=99.5
Q ss_pred ceeece-eeEEeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCC-CceeE-EEECCEeCCCCCceEEEEcCCCccCCCCC
Q 004929 124 KVVKSS-NGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSA-RMYGE-VFVNGAKSEMPYGSYGFVERETTLIGSLT 198 (723)
Q Consensus 124 ~iL~~v-s~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~--~~~~-~~~G~-I~i~G~~~~~~~~~~~yv~Q~~~l~~~lT 198 (723)
..|+.+ ++.+++|++++|+||||||||||++.|++.. +|+. ...|+ |+++++... ..+++++++|...+++. +
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-CHHHHHHHHHHcCCCHH-H
Confidence 346665 6899999999999999999999999999987 4321 01267 777775321 11223333333322211 2
Q ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHh-------hCCcEEEE
Q 004929 199 VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV-------MRPHVLFI 271 (723)
Q Consensus 199 V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~-------~~P~lLlL 271 (723)
+.||+.+ . . .--|++|+|++.++++++ .+|++|++
T Consensus 196 v~~ni~~----------------------------------~-~---~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIl 237 (349)
T 1pzn_A 196 VLKHIYV----------------------------------A-R---AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIV 237 (349)
T ss_dssp HGGGEEE----------------------------------E-E---CCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEE
T ss_pred HhhCEEE----------------------------------E-e---cCChHHHHHHHHHHHHHHHHhccccCCCCEEEE
Confidence 2222110 0 0 011467777888888877 68999999
Q ss_pred eCCCCCCCHHH------------HHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004929 272 DEPLYHLDSVS------------ALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 272 DEPTsgLD~~~------------~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
||||++||+.. ..++++.|+++++ .|+|||++.|... .....++.......|+++.++.
T Consensus 238 Ds~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 238 DSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp ETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred eCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecC
Confidence 99999999852 4567777777775 5899999888753 4444555666667777665543
No 107
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.61 E-value=2.7e-18 Score=199.18 Aligned_cols=192 Identities=15% Similarity=0.098 Sum_probs=113.7
Q ss_pred eEEEEeEEEEEecccccccceeece----------eeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-CCCceeEEEEC
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSS----------NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH-SARMYGEVFVN 173 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~v----------s~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~-~~~~~G~I~i~ 173 (723)
.+.++||+..|..+ .+++|+.+ ++.++. +||+|||||||||||++|+|+..| + +|.|.++
T Consensus 10 ~i~~~~l~~~~~~~---~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~ 80 (608)
T 3szr_A 10 SVAENNLCSQYEEK---VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRC 80 (608)
T ss_dssp ----------CHHH---HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----------CCCS
T ss_pred hhhhhhhhHHHHHH---HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEc
Confidence 46788898888532 12233333 233333 999999999999999999999877 4 4999999
Q ss_pred CEeC--------CCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCC
Q 004929 174 GAKS--------EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245 (723)
Q Consensus 174 G~~~--------~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~ 245 (723)
|.++ ...++.++|++|+..+++.+||+|++.+........ .
T Consensus 81 g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~-------------------------------~ 129 (608)
T 3szr_A 81 PLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGE-------------------------------G 129 (608)
T ss_dssp CEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCS-------------------------------S
T ss_pred CEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCC-------------------------------c
Confidence 9763 122356899999999999999999997653211000 0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCC------CCCCCHHHHHHHHHHHHHHHHc--CCEEEEEEeCCh------HHH
Q 004929 246 KGLPCGERRRVRIARELVMRPHVLFIDEP------LYHLDSVSALLMMVTLKKLAST--GCTLLFTINQSS------TEV 311 (723)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~P~lLlLDEP------TsgLD~~~~~~i~~~L~~l~~~--g~tvi~t~h~~~------~~i 311 (723)
.++| ++++.++.+....|+++++||| |+|||+..+.++.++++++.++ +.++++++|... ..+
T Consensus 130 ~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~l 206 (608)
T 3szr_A 130 MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSM 206 (608)
T ss_dssp SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHH
T ss_pred cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHH
Confidence 0111 1112222233458999999999 9999999999999999997543 455566555532 111
Q ss_pred Hhc-----CCEEEEEeCCeEEEEeChhHHHHHh
Q 004929 312 FGL-----FDRICLLSNGNTLFFGETLACLQHF 339 (723)
Q Consensus 312 ~~~-----~D~v~vL~~G~iv~~G~~~~~~~~f 339 (723)
.+. ...|+|+.++.++..|+.+++.+.+
T Consensus 207 a~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l 239 (608)
T 3szr_A 207 AQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVV 239 (608)
T ss_dssp HHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC
T ss_pred HHHHhhcCCceEEEecchhhcCcccHHHHHHHH
Confidence 111 3568899999988888766554443
No 108
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.58 E-value=1.8e-17 Score=164.49 Aligned_cols=155 Identities=21% Similarity=0.213 Sum_probs=101.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---CCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC
Q 004929 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---MPYGSYGFVERETTLIGSLTVREYLYYSALLQLP 212 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~---~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~ 212 (723)
|++++|+||||||||||+++|+|+++ +. | |.++|.... ...+.++|++|+. ... ++++. .+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~---G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l~---~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SS---G-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPLS---RVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HT---T-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEEE---ECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cC---C-EEEcCEecchhHhhhceEEEEEEec--ccc---eehhh---cccc-
Confidence 78999999999999999999999987 54 8 888886532 2346789999874 111 11110 0000
Q ss_pred CccchHHHHHHHHHHHcCCchH-hhhhhcCCCCCCCCCHHHHHHH-HHHH---HHhhCCcEEEEeC--CCCCCCHHHHHH
Q 004929 213 GFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRV-RIAR---ELVMRPHVLFIDE--PLYHLDSVSALL 285 (723)
Q Consensus 213 ~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~~LSGGerqRv-~IA~---aL~~~P~lLlLDE--PTsgLD~~~~~~ 285 (723)
+..+. .+..++ .+...+|+|||+++ ++++ |++.+|++||+|| |+..+|......
T Consensus 67 -----------------~~~~~~~~~~v~--~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 67 -----------------EPPPGKRECRVG--QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp -----------------CCCSSSCCEESS--SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred -----------------cCCccccccccc--eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 00000 001222 23457999999998 4454 5789999999999 899999875444
Q ss_pred HHHHHHHHHHcCCEEEE---EE-eCChHHHHhcCCEEEEEeCCeEEEEe
Q 004929 286 MMVTLKKLASTGCTLLF---TI-NQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 286 i~~~L~~l~~~g~tvi~---t~-h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
|+++.+...++|+ ++ |... ..+.|+|..+.+|+++...
T Consensus 128 ----l~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 128 ----VRQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp ----HHHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred ----HHHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 4444444555553 33 4432 3567788788888887654
No 109
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.58 E-value=3.7e-16 Score=169.67 Aligned_cols=127 Identities=21% Similarity=0.274 Sum_probs=87.4
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC-ceEEEEcCCCccCCCCCHHHHHHHHHHhc
Q 004929 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY-GSYGFVERETTLIGSLTVREYLYYSALLQ 210 (723)
Q Consensus 132 ~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~-~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~ 210 (723)
...+|++++|+|||||||||||++|+|++++.. .|.|...+.+.+... ...+++.|......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~--~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~--------------- 181 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTK--YHHILTIEDPIEFVHESKKCLVNQREVHRD--------------- 181 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHC--CCEEEEEESSCCSCCCCSSSEEEEEEBTTT---------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCC--CcEEEEccCcHHhhhhccccceeeeeeccc---------------
Confidence 667899999999999999999999999987642 266654433322111 11122322211100
Q ss_pred CCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 004929 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290 (723)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L 290 (723)
.++-.+ +||++|..+|++|++|||| |..+ .+.+
T Consensus 182 ------------------------------------~~~~~~----~La~aL~~~PdvillDEp~---d~e~----~~~~ 214 (356)
T 3jvv_A 182 ------------------------------------TLGFSE----ALRSALREDPDIILVGEMR---DLET----IRLA 214 (356)
T ss_dssp ------------------------------------BSCHHH----HHHHHTTSCCSEEEESCCC---SHHH----HHHH
T ss_pred ------------------------------------cCCHHH----HHHHHhhhCcCEEecCCCC---CHHH----HHHH
Confidence 122222 8999999999999999999 6555 4444
Q ss_pred HHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCC
Q 004929 291 KKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (723)
Q Consensus 291 ~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (723)
.+++++|.+|++|+|..+ .+ ..+||++.|..|
T Consensus 215 ~~~~~~G~~vl~t~H~~~-~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 215 LTAAETGHLVFGTLHTTS-AA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTCEEEEEESCSS-HH-HHHHHHHHTSCH
T ss_pred HHHHhcCCEEEEEEccCh-HH-HHHHHHhhhcCc
Confidence 555678999999999875 34 789999988654
No 110
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.57 E-value=4.9e-17 Score=161.95 Aligned_cols=174 Identities=11% Similarity=0.032 Sum_probs=97.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC-----CCCCCceeEEEECCEeCCCC
Q 004929 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-----PHSARMYGEVFVNGAKSEMP 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~-----~~~~~~~G~I~i~G~~~~~~ 180 (723)
++++|+++.|. ..++++ +.+.+|+.++|+|+||||||||++.|+|.. .++ .|.+.+.+.-. ..
T Consensus 4 l~~~~~~~~~~------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~---~G~~~~~~~~~-~~ 71 (210)
T 1pui_A 4 LNYQQTHFVMS------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKT---PGRTQLINLFE-VA 71 (210)
T ss_dssp -------CEEE------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEE-EE
T ss_pred hhhhhhhheee------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCC---CccceeeEEEE-ec
Confidence 68899999884 257777 888999999999999999999999999987 443 36554322100 00
Q ss_pred CceEEEEcCCCcc----CCCCC---HHHHHHHHHHh-cC----------CCccchHHHHHHHHHHHcCCchH-hhhhhcC
Q 004929 181 YGSYGFVERETTL----IGSLT---VREYLYYSALL-QL----------PGFFCQRKNVVEDAIHAMSLSDY-ANKLIGG 241 (723)
Q Consensus 181 ~~~~~yv~Q~~~l----~~~lT---V~E~l~~~~~~-~~----------~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~ 241 (723)
....++ +.+.+ .+.-. .+..+...... +. .......+..+.+.++..++... ..+++
T Consensus 72 -~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~-- 147 (210)
T 1pui_A 72 -DGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKA-- 147 (210)
T ss_dssp -TTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECG--
T ss_pred -CCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecc--
Confidence 001111 00000 00000 11122111110 00 00001123345556666666532 23323
Q ss_pred CCCCCCCCHHHHHH-HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 004929 242 HCYMKGLPCGERRR-VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 299 (723)
Q Consensus 242 ~~~~~~LSGGerqR-v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~t 299 (723)
..+|+||||| +..+++++.+|+++++|||||++|.....++++.|.++.++|.+
T Consensus 148 ----D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 148 ----DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp ----GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred ----cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 3799999999 89999999999999999999999999999999999998766644
No 111
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.56 E-value=9.6e-17 Score=177.61 Aligned_cols=163 Identities=16% Similarity=0.121 Sum_probs=96.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (723)
.+.++||++.|. ++.+++|+++.+ +|+|+||||||||+++|+|...+... .|.+.+++.+ ......+
T Consensus 11 ~l~~~~l~~~y~-----~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~-t~~~~~i 77 (418)
T 2qag_C 11 YVGFANLPNQVY-----RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK-TVQVEQS 77 (418)
T ss_dssp ----CCCCCCTT-----TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC------CCEEEEE
T ss_pred cEEEEecceeEC-----CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc-ceeeeeE
Confidence 478899988773 457999999997 99999999999999999998764321 1222222211 1112457
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 004929 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (723)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~ 264 (723)
++++|++.+++.+||.||+.+...... ......+.+ ..+. .++.+++||++|||+++.
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~~----~~~~~~i~~---------~i~~---------~~~~~l~qr~~IaRal~~ 135 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVDN----SNCWQPVID---------YIDS---------KFEDYLNAESRVNRRQMP 135 (418)
T ss_dssp ECC------CEEEEEEECC---------------CHHHHH---------HHHH---------HHHHHTTTSCC-CCCCCC
T ss_pred EEEEecCCcccceeeeechhhhhhccc----hhhHHHHHH---------HHHH---------HHHHHHHHHHHHHHHhcc
Confidence 899999888888999999866432110 000011111 1111 355677889999999999
Q ss_pred CCc---EEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCC
Q 004929 265 RPH---VLFIDEPL-YHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307 (723)
Q Consensus 265 ~P~---lLlLDEPT-sgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~ 307 (723)
+|+ +|++|||| .|||+... +.++.+.. +.++|+++|+-
T Consensus 136 d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 136 DNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp CC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEEST
T ss_pred CCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEcc
Confidence 999 99999999 69998873 44555544 67777777764
No 112
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.56 E-value=7.4e-15 Score=147.20 Aligned_cols=152 Identities=17% Similarity=0.117 Sum_probs=98.9
Q ss_pred ceeecee-eEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHH
Q 004929 124 KVVKSSN-GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (723)
Q Consensus 124 ~iL~~vs-~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (723)
+.|+++. +-+++|++++|+||||||||||++.|++ ..+. +.+.++. +..+ +.. .
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~---~v~~i~~---------------~~~~----~~~-~ 61 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGK---KVAYVDT---------------EGGF----SPE-R 61 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCS---EEEEEES---------------SCCC----CHH-H
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCC---cEEEEEC---------------CCCC----CHH-H
Confidence 4566666 4789999999999999999999999999 3221 2333322 2211 111 1
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHHcCCc--hHhhhhhcCCCCCCCCCHHH--HHHHHHHHHHhhC-CcEEEEeCCCCC
Q 004929 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCGE--RRRVRIARELVMR-PHVLFIDEPLYH 277 (723)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~ig~~~~~~~LSGGe--rqRv~IA~aL~~~-P~lLlLDEPTsg 277 (723)
+. +.++.+++. +..+.. .....++++ +++++.+++++.+ |+++++||||++
T Consensus 62 ~~-------------------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 62 LV-------------------QMAETRGLNPEEALSRF-----ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HH-------------------HHHHTTTCCHHHHHHHE-----EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HH-------------------HHHHhcCCChHHHhhcE-----EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 11 111111111 111111 112445553 6788888999986 999999999999
Q ss_pred CCHH--------HHHHHHHHHHHHHH-cCCEEEEEEeCCh------------HHHHhcCCEEEEEeCC
Q 004929 278 LDSV--------SALLMMVTLKKLAS-TGCTLLFTINQSS------------TEVFGLFDRICLLSNG 324 (723)
Q Consensus 278 LD~~--------~~~~i~~~L~~l~~-~g~tvi~t~h~~~------------~~i~~~~D~v~vL~~G 324 (723)
+|+. ...++++.|+++++ .|.|||+++|... ..+.+.||++++|++.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9973 33556777888875 4889998777653 1567899999999754
No 113
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.53 E-value=1.5e-14 Score=141.29 Aligned_cols=79 Identities=16% Similarity=0.210 Sum_probs=67.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEE
Q 004929 244 YMKGLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319 (723)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~~----~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~ 319 (723)
.+..||||||||++||++|+. +|+++||||||+|||+.+...+.+.|+++.++ .++|+++|++ .+.+.||+++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~-~~~ivith~~--~~~~~ad~i~ 137 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE-SQFIVITLRD--VMMANADKII 137 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT-SEEEEECSCH--HHHTTCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC-CEEEEEEecH--HHHHhCCEEE
Confidence 456899999999999999985 46999999999999999999999999998754 5677767775 4678999999
Q ss_pred EEe--CCe
Q 004929 320 LLS--NGN 325 (723)
Q Consensus 320 vL~--~G~ 325 (723)
.+. +|.
T Consensus 138 ~v~~~~g~ 145 (173)
T 3kta_B 138 GVSMRDGV 145 (173)
T ss_dssp EEEEETTE
T ss_pred EEEecCCE
Confidence 664 664
No 114
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.50 E-value=2e-18 Score=170.13 Aligned_cols=173 Identities=14% Similarity=0.087 Sum_probs=111.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCcc
Q 004929 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF 215 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~ 215 (723)
|++++|+||||||||||+++|++ +. .|.+.++|.+.... ...++++|.....+..|+.+++.+.+........
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~---~g~~~i~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 74 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QL---DNSAYIEGDIINHM-VVGGYRPPWESDELLALTWKNITDLTVNFLLAQN 74 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HS---SSEEEEEHHHHHTT-CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---cc---CCeEEEcccchhhh-hccccccCccchhHHHHHHHHHHHHHHHHHhcCC
Confidence 68999999999999999999998 22 38899988653211 1235566655444456788888664322100000
Q ss_pred chHHHHHHHHHHHcCCchHhhhhhcCCCCCCCC--CHHHHHHHHHHH------HHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 004929 216 CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL--PCGERRRVRIAR------ELVMRPHVLFIDEPLYHLDSVSALLMM 287 (723)
Q Consensus 216 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~L--SGGerqRv~IA~------aL~~~P~lLlLDEPTsgLD~~~~~~i~ 287 (723)
..+++.+...... +.+ +.+ |+|++|++.++. +|+.+|+...+|| +||+..... .
T Consensus 75 -------~~ild~~~~~~~~-~~~------~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~ 136 (189)
T 2bdt_A 75 -------DVVLDYIAFPDEA-EAL------AQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-V 136 (189)
T ss_dssp -------EEEEESCCCHHHH-HHH------HHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-H
T ss_pred -------cEEEeeccCHHHH-HHH------HHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-H
Confidence 0011111111111 111 134 888888988888 9999999888884 899988888 8
Q ss_pred HHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004929 288 VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 288 ~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
+.++.+.+.+.++|.++|...+++.++||+|+ ++|+++..|+++-+
T Consensus 137 ~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 137 EEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred HHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 88888876678899888872357888999998 99999999987643
No 115
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.49 E-value=8.6e-17 Score=158.24 Aligned_cols=148 Identities=14% Similarity=0.055 Sum_probs=94.4
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---CCCceEEEEcCCCccCCCCCHHHHHHHHHHh
Q 004929 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---MPYGSYGFVERETTLIGSLTVREYLYYSALL 209 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~---~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~ 209 (723)
+++|++++|+||||||||||+++|+|+ ++ .|.|.++|.+.. .....++|++|+.. +.+||.|++.+.+..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 568999999999999999999999998 33 399999986521 11123566766543 357889988765422
Q ss_pred cCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 004929 210 QLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT 289 (723)
Q Consensus 210 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~ 289 (723)
....... ..++.+++..++...... +..+..+|+|++||+.++|++..+|+++ +|+.....+.+.
T Consensus 79 ~~~~~~~---~~~~~~~~~~~l~~~~~~----~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 79 YAKEGYF---VILDGVVRPDWLPAFTAL----ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp HHHTSCE---EEECSCCCTTTTHHHHTT----CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred HhccCCe---EEEeccCcHHHHHHHHhc----CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 1000000 001111112233322210 1123479999999999999999999876 688888887777
Q ss_pred HHHHHHcCCEEEE
Q 004929 290 LKKLASTGCTLLF 302 (723)
Q Consensus 290 L~~l~~~g~tvi~ 302 (723)
++.+.+.+..+|.
T Consensus 144 ~~~l~~~~~~~i~ 156 (191)
T 1zp6_A 144 FADLGAFEHHVLP 156 (191)
T ss_dssp TTCCGGGGGGEEE
T ss_pred HhccCcccccEEE
Confidence 7666443333444
No 116
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.49 E-value=2.5e-14 Score=163.04 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=70.5
Q ss_pred CCCCC-CHHHHHHHHHHHHHhhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEE
Q 004929 244 YMKGL-PCGERRRVRIARELVMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICL 320 (723)
Q Consensus 244 ~~~~L-SGGerqRv~IA~aL~~~P--~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~v 320 (723)
.+..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |.|||+++|++. +...||++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEE
Confidence 34567 999999999999999999 99999999999999999999999999987 899999999863 4467999999
Q ss_pred EeCC
Q 004929 321 LSNG 324 (723)
Q Consensus 321 L~~G 324 (723)
|++|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9655
No 117
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.49 E-value=9.8e-16 Score=155.45 Aligned_cols=147 Identities=14% Similarity=0.143 Sum_probs=98.1
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-CceEEEEcCCCccCCCCCH----HHHHHHH
Q 004929 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YGSYGFVERETTLIGSLTV----REYLYYS 206 (723)
Q Consensus 132 ~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~-~~~~~yv~Q~~~l~~~lTV----~E~l~~~ 206 (723)
..++|++++|+||||||||||+++|+|+.+|+ ...|.|.+.+.+.... ...++|++|+...++.+++ .|++.+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 45689999999999999999999999998863 2569999988654322 2457888887665544433 2221110
Q ss_pred HHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 004929 207 ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 286 (723)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i 286 (723)
+ + ..+.| +++ +.+++..++++||| ||+.++.++
T Consensus 91 ---------------------------------~-~--~yg~~---~~~---v~~~l~~G~illLD-----LD~~~~~~i 123 (219)
T 1s96_A 91 ---------------------------------G-N--YYGTS---REA---IEQVLATGVDVFLD-----IDWQGAQQI 123 (219)
T ss_dssp ---------------------------------T-E--EEEEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHHH
T ss_pred ---------------------------------h-c--cCCCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHHH
Confidence 0 0 00111 111 34455568999999 999999999
Q ss_pred HHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHhh
Q 004929 287 MVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFS 340 (723)
Q Consensus 287 ~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~ 340 (723)
.+.+. ++.||++++|++. ++.+ |+ +.+| .++++++...+.
T Consensus 124 ~~~l~----~~~tI~i~th~~~-~l~~---Rl--~~rG----~~~~e~i~~rl~ 163 (219)
T 1s96_A 124 RQKMP----HARSIFILPPSKI-ELDR---RL--RGRG----QDSEEVIAKRMA 163 (219)
T ss_dssp HHHCT----TCEEEEEECSSHH-HHHH---HH--HTTS----CSCHHHHHHHHH
T ss_pred HHHcc----CCEEEEEECCCHH-HHHH---HH--HHcC----CCCHHHHHHHHH
Confidence 99876 5889999888764 4443 42 6677 567777665543
No 118
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.44 E-value=3e-14 Score=155.22 Aligned_cols=136 Identities=15% Similarity=0.104 Sum_probs=98.5
Q ss_pred eeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CC--CCceEEEEc-CCCccCCCCCHH
Q 004929 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EM--PYGSYGFVE-RETTLIGSLTVR 200 (723)
Q Consensus 125 iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~-~~--~~~~~~yv~-Q~~~l~~~lTV~ 200 (723)
+++++|+.+++|++++|+||||||||||+++|+|+++++. |.|.++|... .. ..+.+++++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~---g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQ---RLITIEDVPELFLPDHPNHVHLFYPSEAKE------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTS---CEEEEESSSCCCCTTCSSEEEEECC------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCc---eEEEECCccccCccccCCEEEEeecCcccc-------
Confidence 3499999999999999999999999999999999999864 9999998531 11 234577777 54321
Q ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 004929 201 EYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280 (723)
Q Consensus 201 E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~ 280 (723)
+++++..+|..|+.++..+|+.+++||++.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012222355566667777899999999986
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 004929 281 VSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (723)
Q Consensus 281 ~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (723)
.++.+.|+.+.....|++.++|..+ ....+||+..|..|.
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 3456677777655567888889864 567789988887663
No 119
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.44 E-value=6.7e-17 Score=176.31 Aligned_cols=169 Identities=14% Similarity=0.056 Sum_probs=99.8
Q ss_pred eeeceeeEEeC--CcEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 004929 125 VVKSSNGYALP--GTMTVIMGPAKSGKSTLLRAIAGRLPHSA-RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (723)
Q Consensus 125 iL~~vs~~v~~--Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~-~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (723)
+.+.|++.+.+ |+.++|+||||||||||+++|+|+++++. ...|+|.+++... ..+..++.... +
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~-----------~~~~~~~~~~~-~ 224 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLG-----------GDEQAMQYSDY-P 224 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSS-----------SCTTSSCTTTH-H
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcC-----------CCcccCChhHH-H
Confidence 46789999999 99999999999999999999999988741 0015555432100 00001111122 3
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHcC--CchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHh-hCCcEEEEeC---CC
Q 004929 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMS--LSDYANKLIGGHCYMKGLPCGERRRVRIARELV-MRPHVLFIDE---PL 275 (723)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lg--L~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~-~~P~lLlLDE---PT 275 (723)
++.+.... .......+.+.+- ..+..++.+ ..+|+|++||..+++++. .+|+++|||| |+
T Consensus 225 ~I~~~~q~--------~~~~~~t~~~nl~~~~~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~ 290 (365)
T 1lw7_A 225 QMALGHQR--------YIDYAVRHSHKIAFIDTDFITTQA------FCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEW 290 (365)
T ss_dssp HHHHHHHH--------HHHHHHHHCSSEEEESSCHHHHHH------HHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-
T ss_pred HHHHHHHH--------HHHHHHhccCCEEEEeCCchHHHH------HHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCc
Confidence 34332100 0000000011110 111222222 256778888888888875 5999999999 65
Q ss_pred ------CCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEE
Q 004929 276 ------YHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLL 321 (723)
Q Consensus 276 ------sgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (723)
.++|+..+..+.+.|+++.+ .|.+++++.| +. +..+++|++.++
T Consensus 291 ~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde-~~-~~~r~~~~i~~i 341 (365)
T 1lw7_A 291 VDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIES-PS-YLDRYNQVKAVI 341 (365)
T ss_dssp ----------CCSHHHHHHHHHHHHHGGGCCCEEEEC-SS-HHHHHHHHHHHH
T ss_pred ccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCC-CC-HHHHHHHHHHHH
Confidence 58999999999999999864 4788888664 43 455666665544
No 120
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.43 E-value=1.4e-16 Score=163.83 Aligned_cols=146 Identities=21% Similarity=0.235 Sum_probs=99.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHH---cCCCCCCCceeEEEECCEeCCCC-CceEEEEcCCCccCCCCCHHHHHHHHHHhc
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIA---GRLPHSARMYGEVFVNGAKSEMP-YGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~---G~~~~~~~~~G~I~i~G~~~~~~-~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~ 210 (723)
++++++|+||||||||||+++|+ |+..++ .|+|.++|.+.... ...+.+++|+..+++..++.|++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 998775 48888776542111 112344567777788889999997643210
Q ss_pred ------CCCccchHHHHHHHHHH--HcC------------CchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH-hhCCcEE
Q 004929 211 ------LPGFFCQRKNVVEDAIH--AMS------------LSDYANKLIGGHCYMKGLPCGERRRVRIAREL-VMRPHVL 269 (723)
Q Consensus 211 ------~~~~~~~~~~~v~~~l~--~lg------------L~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL-~~~P~lL 269 (723)
..+. ......++.+.+ .++ +....++ .+..||| |+ ++| +.+|+++
T Consensus 103 ~~~~~il~g~-~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r------~~~~lSg----rv---~al~~~~P~~l 168 (246)
T 2bbw_A 103 RGQHWLLDGF-PRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRR------WIHPPSG----RV---YNLDFNPPHVH 168 (246)
T ss_dssp TTSCEEEESC-CCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTE------EEETTTT----EE---EETTTSCCSST
T ss_pred CCCeEEEECC-CCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcC------CCcCCCC----Cc---cccccCCCccc
Confidence 0010 111122233221 122 2222333 3458999 66 778 9999999
Q ss_pred EEe----CCCCCCCHHHHHHHHHHHHHHHHcC
Q 004929 270 FID----EPLYHLDSVSALLMMVTLKKLASTG 297 (723)
Q Consensus 270 lLD----EPTsgLD~~~~~~i~~~L~~l~~~g 297 (723)
+|| |||+|||..+...+.+.|+++.+++
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 999 9999999999999999999987654
No 121
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.39 E-value=2.6e-12 Score=130.53 Aligned_cols=152 Identities=18% Similarity=0.252 Sum_probs=87.1
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHc--CCCCCC--CceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHH
Q 004929 131 GYALPGTMTVIMGPAKSGKSTLLRAIAG--RLPHSA--RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYS 206 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL~~L~G--~~~~~~--~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~ 206 (723)
+-+++|++++|+||||||||||++.|++ ..++.. ...|.+.+++.. .+ ...+...
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~---------------~~----~~~~~~~-- 77 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG---------------TF----RPERLLA-- 77 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CC----CHHHHHH--
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC---------------Cc----CHHHHHH--
Confidence 5688999999999999999999999999 454410 012566665532 10 1111111
Q ss_pred HHhcCCCccchHHHHHHHHHHHcCCc--hHhhhhhcCCCCCCCCCHHHHHH-HHHHHHHh--hCCcEEEEeCCCCCCCHH
Q 004929 207 ALLQLPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCGERRR-VRIARELV--MRPHVLFIDEPLYHLDSV 281 (723)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~ig~~~~~~~LSGGerqR-v~IA~aL~--~~P~lLlLDEPTsgLD~~ 281 (723)
.++.+++. +..+... .....++.+... +.-+.+++ .+|+++++|||++.+|+.
T Consensus 78 ------------------~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~ 135 (243)
T 1n0w_A 78 ------------------VAERYGLSGSDVLDNVA----YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTD 135 (243)
T ss_dssp ------------------HHHHTTCCHHHHHHTEE----EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC--
T ss_pred ------------------HHHHcCCCHHHHhhCeE----EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHH
Confidence 11111111 0111110 112455555433 33334444 489999999999999975
Q ss_pred -------H-----HHHHHHHHHHHHH-cCCEEEEEEeCChHH------------------HHhcCCEEEEEeCCe
Q 004929 282 -------S-----ALLMMVTLKKLAS-TGCTLLFTINQSSTE------------------VFGLFDRICLLSNGN 325 (723)
Q Consensus 282 -------~-----~~~i~~~L~~l~~-~g~tvi~t~h~~~~~------------------i~~~~D~v~vL~~G~ 325 (723)
. ...+++.|+++++ .|.|||+++|..... +.++||.+++|++|+
T Consensus 136 ~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~ 210 (243)
T 1n0w_A 136 YSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR 210 (243)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEECS
T ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEcC
Confidence 3 3456666777764 589999977753211 223899999998653
No 122
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.39 E-value=3.5e-14 Score=155.24 Aligned_cols=131 Identities=18% Similarity=0.206 Sum_probs=93.4
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-CceEEEEcCCCccCCCCCHHHH
Q 004929 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YGSYGFVERETTLIGSLTVREY 202 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~-~~~~~yv~Q~~~l~~~lTV~E~ 202 (723)
.+|++++ +++|++++|+||||||||||+++|+|++++.. +|+|.+.|.+.... ...+++++|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~--~g~I~~~e~~~e~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTK--SYHIITIEDPIEYVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHS--CCEEEEEESSCCSCCCCSSSEEEEEE-----------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCC--CcEEEEecccHhhhhccCceEEEeee-----------
Confidence 3566665 78999999999999999999999999987641 39997766554321 23355665531
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 004929 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282 (723)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~ 282 (723)
+|+. +..+ +.+|+++|..+|++|++|||+ |..+
T Consensus 191 --------------------------~g~~------------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 --------------------------VGED------------TKSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp --------------------------BTTT------------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred --------------------------cCCC------------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 1111 1134 468999999999999999999 7766
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 004929 283 ALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (723)
Q Consensus 283 ~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (723)
... .++. +..|.+++.|+|... +.+.+||++.|.
T Consensus 224 ~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 224 VET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 443 3433 356889988888753 677788887664
No 123
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.39 E-value=2.3e-16 Score=168.93 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=97.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC--------CCCCCceeEEEECCEeCCCCC--------------------ceEEEE-
Q 004929 137 TMTVIMGPAKSGKSTLLRAIAGRL--------PHSARMYGEVFVNGAKSEMPY--------------------GSYGFV- 187 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~--------~~~~~~~G~I~i~G~~~~~~~--------------------~~~~yv- 187 (723)
++++|+|+||||||||+|.|+|.. .++ .|+|.++|.++.... +.++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 589999999999999999999986 444 499999997653211 113334
Q ss_pred --cCCCccCCCCCHHHHHHHH--HHh--cC-CCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHH
Q 004929 188 --ERETTLIGSLTVREYLYYS--ALL--QL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (723)
Q Consensus 188 --~Q~~~l~~~lTV~E~l~~~--~~~--~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (723)
+|+..+++..+|.|+..++ ..+ .. .........+++.++..+++.+..++.. ++|+||+||+..++
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-------~ls~g~~Q~~~ad~ 154 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-------QFTIAQSQVGYADR 154 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-------HCHHHHHHHHTCSE
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-------hchHHHHHHHhCCE
Confidence 3444444455555544221 000 00 0000000001112233445555555432 69999999999999
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCC
Q 004929 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 316 (723)
Q Consensus 261 aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D 316 (723)
+++.+|+++ ||| ..+.+.|+++. .+.+|++++|.+. ++..++|
T Consensus 155 ill~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 155 ILLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp EEEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC-CGGGGSC
T ss_pred EEEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC-CHHHHhC
Confidence 999999987 998 77888888875 5789999888764 3434443
No 124
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.38 E-value=6.3e-15 Score=162.66 Aligned_cols=184 Identities=14% Similarity=0.092 Sum_probs=113.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcE--EEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 004929 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTM--TVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~--~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (723)
+++++ ++.|. +.+ |++||+.+++|++ +||+||||||||||+|+|+|+.- .|...- ........+.
T Consensus 17 l~~~~-~~~y~-----~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~-~~~~~~~~~~ 83 (427)
T 2qag_B 17 VPLAG-HVGFD-----SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPAT-HTQPGVQLQS 83 (427)
T ss_dssp CCCCC-CC-CC-------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------------CCSSCEEEE
T ss_pred EEEee-EEEEC-----Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCC-CCCccceEee
Confidence 44555 55552 234 9999999999999 99999999999999999999842 132111 1011111246
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccch----HHHHHHHHHHHc-CCch----Hhhhhhc-----CCCCCCCCC
Q 004929 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ----RKNVVEDAIHAM-SLSD----YANKLIG-----GHCYMKGLP 249 (723)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~----~~~~v~~~l~~l-gL~~----~~~~~ig-----~~~~~~~LS 249 (723)
++|++|++.+++.+||.||+.++........... .+...++.++.. ++.. ..|..+. -.+..++|+
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~ 163 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK 163 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C
T ss_pred EEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC
Confidence 8999999988888999998855321100000000 123444555554 4331 1121110 001124677
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCCEEEEEEe
Q 004929 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK-LASTGCTLLFTIN 305 (723)
Q Consensus 250 GGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~-l~~~g~tvi~t~h 305 (723)
-.+ +.|+++|..+++++++|||+..|.+.....+.+.+++ +...|..|+.++.
T Consensus 164 ~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 164 SLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred HHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 776 7899999999999999999999999999999999986 8788888887654
No 125
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.38 E-value=2.7e-14 Score=159.59 Aligned_cols=153 Identities=12% Similarity=0.121 Sum_probs=104.6
Q ss_pred eeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----------CCceEEEEcCCCccC
Q 004929 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----------PYGSYGFVERETTLI 194 (723)
Q Consensus 126 L~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~-----------~~~~~~yv~Q~~~l~ 194 (723)
-+++|+.+++|++++|+|+||||||||+++|+|++++.+ |+|.++|.+... .++.++|++|+..++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~---G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQG---KSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcC---CeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 368999999999999999999999999999999988764 999998765321 123589999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHh-hCC-cEEEEe
Q 004929 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV-MRP-HVLFID 272 (723)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~-~~P-~lLlLD 272 (723)
+.+||++++.++...... .-+++..|+.+....+. .+| +|++.+++++. ..| .+||..
T Consensus 360 p~~tV~e~l~~a~~~~~D----------vVLIDTaGrl~~~~~lm------~EL----~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 360 SASVIFDAIQAAKARNID----------VLIADTAGRLQNKSHLM------EEL----KKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHHTTCS----------EEEECCCCSCCCHHHHH------HHH----HHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCC----------EEEEeCCCccchhhhHH------HHH----HHHHHHHHHhccCCCCeeEEEe
Confidence 889999999876432110 00123333322222111 123 47888888764 457 466665
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCC
Q 004929 273 EPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQS 307 (723)
Q Consensus 273 EPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~ 307 (723)
++|+|.|.. +.++.+.+ -|.|.++.+|-+
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTKLD 449 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTKLD 449 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEECGG
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEcCC
Confidence 688886554 34555553 477888877854
No 126
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.36 E-value=9.4e-14 Score=149.12 Aligned_cols=160 Identities=11% Similarity=0.047 Sum_probs=106.9
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------C--ceEEEEcCCCccCCCCCHHHH
Q 004929 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---------Y--GSYGFVERETTLIGSLTVREY 202 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---------~--~~~~yv~Q~~~l~~~lTV~E~ 202 (723)
++|++++|+||||||||||+++|+|++++.+ |+|.+.|.+.... . ..+.+++|+..+.|.+||+|+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~---g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHG---FSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC---CEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 5899999999999999999999999998865 9999999875321 1 135699999999999999999
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 004929 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282 (723)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~ 282 (723)
+.++....... -+++..|+.+..+..+ .+|| .|++++..++.+++||.+|.
T Consensus 204 l~~~~~~~~d~----------vliDtaG~~~~~~~l~------~eL~-------~i~ral~~de~llvLDa~t~------ 254 (328)
T 3e70_C 204 IQHAKARGIDV----------VLIDTAGRSETNRNLM------DEMK-------KIARVTKPNLVIFVGDALAG------ 254 (328)
T ss_dssp HHHHHHHTCSE----------EEEEECCSCCTTTCHH------HHHH-------HHHHHHCCSEEEEEEEGGGT------
T ss_pred HHHHHhccchh----------hHHhhccchhHHHHHH------HHHH-------HHHHHhcCCCCEEEEecHHH------
Confidence 97753211100 0122233332222221 1343 38899988888888885543
Q ss_pred HHHHHHHHHHHH-HcCCEEEEEEeCChH--------HHHhcCCEEEEEeCCeE
Q 004929 283 ALLMMVTLKKLA-STGCTLLFTINQSST--------EVFGLFDRICLLSNGNT 326 (723)
Q Consensus 283 ~~~i~~~L~~l~-~~g~tvi~t~h~~~~--------~i~~~~D~v~vL~~G~i 326 (723)
.++++.++.+. +.+.|+|+++|.+.. .+....-.|..+..|+-
T Consensus 255 -~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 255 -NAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG 306 (328)
T ss_dssp -THHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred -HHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence 45666677776 458888888887631 12233345555555543
No 127
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.36 E-value=1.9e-13 Score=147.88 Aligned_cols=120 Identities=20% Similarity=0.145 Sum_probs=83.7
Q ss_pred eeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEEC-CEeCC-CCCceEEEEcCCCccCCCCCHHH
Q 004929 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEVFVN-GAKSE-MPYGSYGFVERETTLIGSLTVRE 201 (723)
Q Consensus 125 iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~-~~~~~~G~I~i~-G~~~~-~~~~~~~yv~Q~~~l~~~lTV~E 201 (723)
-+++++.. .+|++++|+||||||||||+|+|+|..+ +.. |+|.++ |+... .....+++++|+..++++.||+|
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~---G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILT---NDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCC---C-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccccc---CCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 35566654 4799999999999999999999999988 764 999987 65432 22356899999998999989988
Q ss_pred HHHHHHHhcCCC-ccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004929 202 YLYYSALLQLPG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 202 ~l~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
+. +.. ...+..+.+.++++.+|+.+..+. .+.++| ||+||++||+++
T Consensus 281 ~~-------l~~l~~~e~~~~~~e~l~~~gl~~f~~~------~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 281 FG-------LWHLEPEQITQGFVEFHDYLGHCKYRDC------KHDADP-GCAIREAVENGA 328 (358)
T ss_dssp CC-------CCCCCHHHHHHTSGGGGGGTTCSSSTTC------CSSSCT-TCHHHHHHHHTS
T ss_pred hh-------hcCCCHHHHHHHHHHHHHHcCCchhcCC------CcccCC-HHHHHHHHHhcC
Confidence 41 111 111234557788888898877765 445899 999999999864
No 128
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.34 E-value=2.3e-14 Score=137.92 Aligned_cols=79 Identities=19% Similarity=0.091 Sum_probs=64.5
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 004929 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (723)
.+.+++++|+.+++|++++|+||||||||||+|+|+|++ |.. |+|.++|.++...+....+++|+..++ .+||.|
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~---G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQ---GNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCC---SCCCCCTTTCEEEEEETTEEEEEEECT-TCSCTT
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCC---CeEEECCEeeeeeccCCCcceeccccc-cCCcHH
Confidence 346899999999999999999999999999999999998 654 999999965421111112788988888 899999
Q ss_pred HHHH
Q 004929 202 YLYY 205 (723)
Q Consensus 202 ~l~~ 205 (723)
++.+
T Consensus 94 ~l~~ 97 (158)
T 1htw_A 94 ELEF 97 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9854
No 129
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.32 E-value=2.5e-12 Score=140.48 Aligned_cols=78 Identities=23% Similarity=0.303 Sum_probs=67.7
Q ss_pred CCCCCCHHHHHHH------HHHHHHhhC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCC
Q 004929 244 YMKGLPCGERRRV------RIARELVMR-PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 316 (723)
Q Consensus 244 ~~~~LSGGerqRv------~IA~aL~~~-P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D 316 (723)
.+..||||||||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++.+ +.+||+++|++ ++..+||
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~--~~~~~~d 353 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHR--ELEDVAD 353 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCG--GGGGGCS
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChH--HHHhhCC
Confidence 3468999999988 567899999 999999999999999999999999999753 46889989986 3678999
Q ss_pred EEEEEe-CC
Q 004929 317 RICLLS-NG 324 (723)
Q Consensus 317 ~v~vL~-~G 324 (723)
++++|+ +|
T Consensus 354 ~~~~l~k~~ 362 (371)
T 3auy_A 354 VIINVKKDG 362 (371)
T ss_dssp EEEEEEESS
T ss_pred EEEEEEecC
Confidence 999997 44
No 130
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.32 E-value=1.1e-14 Score=142.08 Aligned_cols=138 Identities=15% Similarity=0.120 Sum_probs=85.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-CC-------C-ceEE----EEcCCCccCCCCCHHHHH
Q 004929 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-MP-------Y-GSYG----FVERETTLIGSLTVREYL 203 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~-~~-------~-~~~~----yv~Q~~~l~~~lTV~E~l 203 (723)
++++|+|+||||||||+++|+|++++.+...|.|.++|.++. .. + +.++ ++.|+..++ ++|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 589999999999999999999998875333599999997621 11 1 2345 778876654 110
Q ss_pred HHHHHhcCCCccchHHHHHHHHHHH-cCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEE-------EEeCCC
Q 004929 204 YYSALLQLPGFFCQRKNVVEDAIHA-MSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVL-------FIDEPL 275 (723)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lL-------lLDEPT 275 (723)
. . .+....+++.++. +. -.|+.++ .+||||||||++|||+++.+|++. .-|.|.
T Consensus 77 --------~-~-~~~~a~l~~~i~~~l~---g~dt~i~-----EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~ 138 (171)
T 2f1r_A 77 --------V-S-EEEGNDLDWIYERYLS---DYDLVIT-----EGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERV 138 (171)
T ss_dssp --------C-C-HHHHTCHHHHHHHHTT---TCSEEEE-----ESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCC
T ss_pred --------C-C-hhhhhCHHHHHHhhCC---CCCEEEE-----CCcCCCCCcEEEEEecccCCCccCccceEEEEecCCc
Confidence 0 0 0001124445554 42 2455554 269999999999999999999873 235553
Q ss_pred CC---CCHHHHHHHHHHHHHHHHcCC
Q 004929 276 YH---LDSVSALLMMVTLKKLASTGC 298 (723)
Q Consensus 276 sg---LD~~~~~~i~~~L~~l~~~g~ 298 (723)
.+ +|......+.+.+.+...+|.
T Consensus 139 ~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 139 DGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp SSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred ccCcccCcccHHHHHHHHHHHHhccC
Confidence 22 344556778888877666664
No 131
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.31 E-value=3e-13 Score=131.95 Aligned_cols=47 Identities=19% Similarity=0.121 Sum_probs=42.4
Q ss_pred hhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChH
Q 004929 263 VMRPHVLFIDEPLY-HLDSVSALLMMVTLKKLASTGCTLLFTINQSST 309 (723)
Q Consensus 263 ~~~P~lLlLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~ 309 (723)
+.+|++|+||||++ ++|+..+..+.+++....++|+++|+++|++..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 45999999999995 999999999999999988889999999998854
No 132
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.31 E-value=2.1e-14 Score=158.85 Aligned_cols=161 Identities=16% Similarity=0.121 Sum_probs=94.8
Q ss_pred eeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCC----------ccCC
Q 004929 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERET----------TLIG 195 (723)
Q Consensus 126 L~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~----------~l~~ 195 (723)
-+++++.++.|+.++|+|+|||||||||++|+|..+. +.+.+.......++++.+++ .+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~---------i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPK---------IAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 217 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCE---------ECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCcc---------ccCcccceecceeeEEEecCcceEEEEecccccc
Confidence 4789999999999999999999999999999998431 12222111112234444332 2211
Q ss_pred CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 004929 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPL 275 (723)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPT 275 (723)
. ..++. .+.....+..++++.++..+++. +. ...+||+||+||+.+|++|+.+|.+|++
T Consensus 218 ~--a~~~~------~L~~~fl~~~era~~lL~vvDls---~~------~~~~ls~g~~el~~la~aL~~~P~ILVl---- 276 (416)
T 1udx_A 218 G--ASEGK------GLGLEFLRHIARTRVLLYVLDAA---DE------PLKTLETLRKEVGAYDPALLRRPSLVAL---- 276 (416)
T ss_dssp C--GGGSC------CSCHHHHHHHTSSSEEEEEEETT---SC------HHHHHHHHHHHHHHHCHHHHHSCEEEEE----
T ss_pred c--hhhhh------hhhHHHHHHHHHHHhhhEEeCCc---cC------CHHHHHHHHHHHHHHhHHhhcCCEEEEE----
Confidence 1 00000 00000000000111222222332 22 2347999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHH-HHcCCEEEEEEeCChHHHHhcCCE
Q 004929 276 YHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTEVFGLFDR 317 (723)
Q Consensus 276 sgLD~~~~~~i~~~L~~l-~~~g~tvi~t~h~~~~~i~~~~D~ 317 (723)
+++|...+ ..++.+++. .+.|.+++.++.+....+.++++.
T Consensus 277 NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 277 NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 99998877 444555444 455777777665544445555444
No 133
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.29 E-value=2.2e-12 Score=122.73 Aligned_cols=95 Identities=19% Similarity=0.362 Sum_probs=70.8
Q ss_pred eeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCEeCCCCCceEEEEcCCCccCCCCCHHHH
Q 004929 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG--EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (723)
Q Consensus 125 iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G--~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (723)
+|+++ +|+.++|+||||+|||||+++|+|...+. | .+.+++. +... .
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~----g~~~~~~~~~---------------~~~~-~------ 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALEA----GKNAAYIDAA---------------SMPL-T------ 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHTT----TCCEEEEETT---------------TSCC-C------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHhc----CCcEEEEcHH---------------HhhH-H------
Confidence 45555 89999999999999999999999987653 4 3443332 1100 0
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 004929 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282 (723)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~ 282 (723)
+++.+|++|++|||++ +|...
T Consensus 79 ----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~ 99 (149)
T 2kjq_A 79 ----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEE 99 (149)
T ss_dssp ----------------------------------------------------------GGGGGCSEEEEESTTC-CCSHH
T ss_pred ----------------------------------------------------------HHHhCCCEEEEeCccc-cChHH
Confidence 1245799999999998 66555
Q ss_pred HHHHHHHHHHHHHcCCE-EEEEEeCChH
Q 004929 283 ALLMMVTLKKLASTGCT-LLFTINQSST 309 (723)
Q Consensus 283 ~~~i~~~L~~l~~~g~t-vi~t~h~~~~ 309 (723)
+..+.+++.++.++|++ +|+++|.+..
T Consensus 100 ~~~l~~li~~~~~~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 100 QALLFSIFNRFRNSGKGFLLLGSEYTPQ 127 (149)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESSCTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence 88999999999888887 8887776543
No 134
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.28 E-value=5.8e-12 Score=140.19 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=67.8
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE
Q 004929 246 KGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (723)
Q Consensus 246 ~~LSGGerqRv~IA~aL~----~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (723)
..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.+++.++|+++|++ .....||++++|
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 359999999999999999 57999999999999999999999999999876688999988884 567889999999
Q ss_pred e
Q 004929 322 S 322 (723)
Q Consensus 322 ~ 322 (723)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
No 135
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.28 E-value=4.5e-13 Score=142.34 Aligned_cols=117 Identities=19% Similarity=0.233 Sum_probs=81.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCCC-----ceEEEEcCCCccC-----CCCCHH
Q 004929 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV---NGAKSEMPY-----GSYGFVERETTLI-----GSLTVR 200 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i---~G~~~~~~~-----~~~~yv~Q~~~l~-----~~lTV~ 200 (723)
.+|++++|+||||||||||+|+|+ +.++.. |+|.+ +|+...... +.+||++|.+.+. +.+|+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~---G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELRT---QEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCCC---SCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCcc---cccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 479999999999999999999999 888764 99999 887643211 2479999998553 68899
Q ss_pred HHH--HHH----HHhcCCC--ccchHHHHHHHHHHHcCCch-HhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004929 201 EYL--YYS----ALLQLPG--FFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 201 E~l--~~~----~~~~~~~--~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
|++ .|+ ..++... ...+...+++++++.++|.+ ..++.+ +.|||.++|++.|||+
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~------~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL------KIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH------HHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH------HHHHHHHHHHHHHhcc
Confidence 887 443 1111111 11123457899999999986 666655 4899999999999874
No 136
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.27 E-value=1.2e-13 Score=145.89 Aligned_cols=129 Identities=17% Similarity=0.154 Sum_probs=87.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHH----hc
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSAL----LQ 210 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~----~~ 210 (723)
++.+++|.|+||||||||++.|++++.+. | . ..+.+.+|.|++.+++. ++++++.+... +.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~----g------~----~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~ 94 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK----Y------G----GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQ 94 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH----H------G----GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc----C------C----CCceEEEeccccccCCh-HHHHHHhccccccchhh
Confidence 68899999999999999999999988652 2 0 12345566999988864 88888876521 11
Q ss_pred ---CCCccchHHHHHHHHHHHcCCc--hHhhhhhcCCCCCCCCCHHHHHHHHHH--HHHhhCCcEEEEeCCCCCCCHHH
Q 004929 211 ---LPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCGERRRVRIA--RELVMRPHVLFIDEPLYHLDSVS 282 (723)
Q Consensus 211 ---~~~~~~~~~~~v~~~l~~lgL~--~~~~~~ig~~~~~~~LSGGerqRv~IA--~aL~~~P~lLlLDEPTsgLD~~~ 282 (723)
.|.. ...+...+.++.+... ......+.-..+.+.+||||+||+++| +++ +|+|||+||||++||+..
T Consensus 95 ~~g~p~a--~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 95 GRGLPGT--HDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSCSTTS--BCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hccCcch--hHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 1211 1344556666666432 000000000234578999999999997 555 999999999999999853
No 137
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.26 E-value=2.6e-14 Score=154.20 Aligned_cols=174 Identities=12% Similarity=0.043 Sum_probs=111.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 004929 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (723)
++.+++++.+. .+.+|+++|+.+.+|++++|+||||||||||+++|+|++++.+ |+|.+.|.+...
T Consensus 30 ie~~~~~~~~~-----~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~---g~v~i~~~d~~~~~~~~~ 101 (337)
T 2qm8_A 30 AESRRADHRAA-----VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAG---HKVAVLAVDPSSTRTGGS 101 (337)
T ss_dssp HTCSSHHHHHH-----HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEEECGGGGSSCCC
T ss_pred HeeCCcccccC-----hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCC---CEEEEEEEcCcccccccc
Confidence 45566665542 3469999999999999999999999999999999999988764 999999876421
Q ss_pred ---CCceEEEEcCCCccCCCC------------CHHHHHHHHHHhcC-------CCcc-------------------chH
Q 004929 180 ---PYGSYGFVERETTLIGSL------------TVREYLYYSALLQL-------PGFF-------------------CQR 218 (723)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~l------------TV~E~l~~~~~~~~-------~~~~-------------------~~~ 218 (723)
.+..+++++|++.+++.. +++|.+........ ++.. ...
T Consensus 102 ~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~ 181 (337)
T 2qm8_A 102 ILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAG 181 (337)
T ss_dssp SSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC-
T ss_pred hHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCc
Confidence 124578999988776532 22333211000000 0000 000
Q ss_pred HH--HHH-HHHHHcCCchHhhhhhcCC-CCCCCCCHHHHHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHH
Q 004929 219 KN--VVE-DAIHAMSLSDYANKLIGGH-CYMKGLPCGERRRVRIARELVM------RPHVLFIDEPLYHLDSVSALLMMV 288 (723)
Q Consensus 219 ~~--~v~-~~l~~lgL~~~~~~~ig~~-~~~~~LSGGerqRv~IA~aL~~------~P~lLlLDEPTsgLD~~~~~~i~~ 288 (723)
++ .+. .+.+...+- ..++ . + .....+|+|++|++..+++++. +|++++ ||++|......+++
T Consensus 182 ~~~~~i~~~i~~~~~iv-vlNK-~--Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~ 253 (337)
T 2qm8_A 182 DELQGIKKGIFELADMI-AVNK-A--DDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWS 253 (337)
T ss_dssp -----CCTTHHHHCSEE-EEEC-C--STTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHH
T ss_pred ccHHHHHHHHhccccEE-EEEc-h--hccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHH
Confidence 00 000 001111110 0111 0 1 1124589999999999999987 688887 99999999999999
Q ss_pred HHHHHHH
Q 004929 289 TLKKLAS 295 (723)
Q Consensus 289 ~L~~l~~ 295 (723)
.|.++.+
T Consensus 254 ~I~~~~~ 260 (337)
T 2qm8_A 254 RIEDHRS 260 (337)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988754
No 138
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.24 E-value=2.8e-11 Score=133.14 Aligned_cols=158 Identities=15% Similarity=0.200 Sum_probs=93.2
Q ss_pred eeece-eeEEeCCcEEEEECCCCCcHHHHHHH--HHcCCCCCC--CceeEEEECCEeCCCCCceEEEEcCCCccCCCCCH
Q 004929 125 VVKSS-NGYALPGTMTVIMGPAKSGKSTLLRA--IAGRLPHSA--RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTV 199 (723)
Q Consensus 125 iL~~v-s~~v~~Ge~~aIlGpsGsGKSTLL~~--L~G~~~~~~--~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV 199 (723)
-|+.+ .+-+++|++++|+||||||||||++. +++..++.. .-.+.++++++. .+ ..
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~---------------~~----~~ 226 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG---------------TF----RP 226 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CC----CH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC---------------cc----CH
Confidence 34443 36789999999999999999999994 456665421 012355555432 11 11
Q ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch--HhhhhhcCCCCCCCCCH-HHHHHHHHHHHHh--hCCcEEEEeCC
Q 004929 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD--YANKLIGGHCYMKGLPC-GERRRVRIARELV--MRPHVLFIDEP 274 (723)
Q Consensus 200 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~ig~~~~~~~LSG-GerqRv~IA~aL~--~~P~lLlLDEP 274 (723)
.++.+..+.+|+.. ..+... ..+..++ .+.+.+.-+.+++ .+|+++++|||
T Consensus 227 --------------------~rl~~~a~~~gl~~~~vleni~----~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~ 282 (400)
T 3lda_A 227 --------------------VRLVSIAQRFGLDPDDALNNVA----YARAYNADHQLRLLDAAAQMMSESRFSLIVVDSV 282 (400)
T ss_dssp --------------------HHHHHHHHHTTCCHHHHHHTEE----EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETG
T ss_pred --------------------HHHHHHHHHcCCChHhHhhcEE----EeccCChHHHHHHHHHHHHHHHhcCCceEEecch
Confidence 11112223333321 111110 1112222 2334444444443 46999999999
Q ss_pred CCCCCHHHH------------HHHHHHHHHHHH-cCCEEEEEEeCCh------------------HHHHhcCCEEEEEeC
Q 004929 275 LYHLDSVSA------------LLMMVTLKKLAS-TGCTLLFTINQSS------------------TEVFGLFDRICLLSN 323 (723)
Q Consensus 275 TsgLD~~~~------------~~i~~~L~~l~~-~g~tvi~t~h~~~------------------~~i~~~~D~v~vL~~ 323 (723)
++.+|+... .++++.|+++++ .|.|||+++|... ..+.+.+|.++.|++
T Consensus 283 t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~ 362 (400)
T 3lda_A 283 MALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKK 362 (400)
T ss_dssp GGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEE
T ss_pred hhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEe
Confidence 999996533 678888999885 5999999888711 234678999999987
Q ss_pred Ce
Q 004929 324 GN 325 (723)
Q Consensus 324 G~ 325 (723)
|+
T Consensus 363 ~~ 364 (400)
T 3lda_A 363 GK 364 (400)
T ss_dssp CS
T ss_pred cC
Confidence 64
No 139
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.19 E-value=1.2e-13 Score=152.83 Aligned_cols=131 Identities=17% Similarity=0.159 Sum_probs=90.3
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------CceEEEEc------
Q 004929 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---------YGSYGFVE------ 188 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---------~~~~~yv~------ 188 (723)
.+|+++ + .++|++++|+|||||||||||++|+|.+++.. |+|.+.|.+++.. ...+++.+
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~---g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSE---RNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTT---SCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCC---CEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 367777 4 37999999999999999999999999988764 9999988765321 11234433
Q ss_pred ---CCCcc--CCC----CCHHHHHHHHHHhcC--CCccc-hHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH
Q 004929 189 ---RETTL--IGS----LTVREYLYYSALLQL--PGFFC-QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (723)
Q Consensus 189 ---Q~~~l--~~~----lTV~E~l~~~~~~~~--~~~~~-~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (723)
|++.. ++. .|+.+++.++..-.+ ..... ...+ +.+.+..+++.+.. .. ..|||||+||
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~~------~~LSgg~~QR- 301 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--IS------SSLLGVLAQR- 301 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--HH------HHEEEEEEEE-
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--HH------HHHHHHHHHH-
Confidence 77654 343 588888876532110 00001 1122 33357778887654 33 3899999999
Q ss_pred HHHHHHhhCCcEEE
Q 004929 257 RIARELVMRPHVLF 270 (723)
Q Consensus 257 ~IA~aL~~~P~lLl 270 (723)
||++|+.+|++..
T Consensus 302 -LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 -LVRTLCPDCKEPY 314 (418)
T ss_dssp -EEEEECTTTCEEE
T ss_pred -hhhhhcCCCCccC
Confidence 9999999999876
No 140
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.16 E-value=1.5e-14 Score=164.14 Aligned_cols=177 Identities=14% Similarity=0.061 Sum_probs=104.6
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-CCCC-CceEEEEcCCCc--------
Q 004929 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMP-YGSYGFVERETT-------- 192 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~-~~~~-~~~~~yv~Q~~~-------- 192 (723)
..+++++++.+++|+.++|+|||||||||||++|+|+++++. |.|.+.|.. .... ...+.++.|...
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~---giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDA---KVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTC---CEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCC---CEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 457899999999999999999999999999999999998874 999998864 2211 233555554322
Q ss_pred --------------cCCCCCHHHHHHHHHHhcCCCcc--chHHHHHHHHHHHcCC-----chHhhhhhcC-CCCCCCCCH
Q 004929 193 --------------LIGSLTVREYLYYSALLQLPGFF--CQRKNVVEDAIHAMSL-----SDYANKLIGG-HCYMKGLPC 250 (723)
Q Consensus 193 --------------l~~~lTV~E~l~~~~~~~~~~~~--~~~~~~v~~~l~~lgL-----~~~~~~~ig~-~~~~~~LSG 250 (723)
+++.++..|++.+.......... +-....+.++++.+.. ....-..+.. ......+||
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 22345555544332222111000 0000112333333322 1110000000 012345799
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE--EEeCChHHHHhcC
Q 004929 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF--TINQSSTEVFGLF 315 (723)
Q Consensus 251 GerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~--t~h~~~~~i~~~~ 315 (723)
|||||++++. + | |+|||+.....+++.|.++.++|.|+++ ++|.. .++...|
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l-~ei~~~~ 457 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKL-EKMADFL 457 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHH-HHHHHHH
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHH-HHHHHHc
Confidence 9999987751 2 7 9999998777777777666666777764 45543 4554444
No 141
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.15 E-value=1.9e-11 Score=131.70 Aligned_cols=133 Identities=14% Similarity=0.103 Sum_probs=73.7
Q ss_pred EEEECCCCCcHHHHHHHHHc-CCCCCCCceeEEEECCEeCCC---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCc
Q 004929 139 TVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEM---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G-~~~~~~~~~G~I~i~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 214 (723)
+.|.||||+|||||+++|+| +..++. |++.++|.+... ....+++++|.+.+.-..+-. . .
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~---g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~--~- 103 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGV---YRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDM---------G--N- 103 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTC---CC------------------CCEECSSEEEECCC----------------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCC---CeEEecceeecccccccceeeeecccceEEecHhhc---------C--C-
Confidence 89999999999999999999 666654 999998865321 124567777766432111000 0 0
Q ss_pred cchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 004929 215 FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294 (723)
Q Consensus 215 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~ 294 (723)
.....+++.++.+......+. .. .||| +..+|+++|+|||++ ||..++..+.+.|.+..
T Consensus 104 --~~~~~~~~~i~~~~~~~~~~~------~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 104 --NDRIVIQELLKEVAQMEQVDF------QD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp --CCHHHHHHHHHHHTTTTC------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred --cchHHHHHHHHHHHHhccccc------cc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 011123344433321111111 00 3566 788999999999999 99999999999998864
Q ss_pred HcCCEEEEEEeCCh
Q 004929 295 STGCTLLFTINQSS 308 (723)
Q Consensus 295 ~~g~tvi~t~h~~~ 308 (723)
.+.++|+++|++.
T Consensus 163 -~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 163 -KNIRLIMVCDSMS 175 (354)
T ss_dssp -TTEEEEEEESCSC
T ss_pred -CCCEEEEEeCCHH
Confidence 3678888889875
No 142
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.15 E-value=6.3e-14 Score=140.42 Aligned_cols=121 Identities=17% Similarity=0.120 Sum_probs=67.4
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC
Q 004929 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLP 212 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~ 212 (723)
.++|++++|+||||||||||+++|+|++++. | ..++++++++..+.. +..+++........+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g-------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G-------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T-------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C-------------CceEEEecCCCcCCH-HHHHHhcccccCCCC
Confidence 4589999999999999999999999998753 2 123444444433321 111211000000011
Q ss_pred CccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHH-HHHhhCCcEEEEeCCC
Q 004929 213 GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA-RELVMRPHVLFIDEPL 275 (723)
Q Consensus 213 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA-~aL~~~P~lLlLDEPT 275 (723)
. ........+.+..+...+..+... .+...++|+||+||+++| ++++.++.++++|||.
T Consensus 81 ~--~~~~~~~~~~l~~l~~~~~i~~p~--~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 81 E--TFDFEGFQRLCHALKHQERVIYPL--FDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp G--GBCHHHHHHHHHHHHHCSCEEEEE--EETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred c--hhhHHHHHHHHHHHhcCCceeccc--CCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 0 011222333333332111111111 123346899999999998 7888888888888874
No 143
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.10 E-value=7.4e-12 Score=132.87 Aligned_cols=104 Identities=18% Similarity=0.228 Sum_probs=70.0
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCC-----CceEEEEcCCCc------------
Q 004929 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV---NGAKSEMP-----YGSYGFVERETT------------ 192 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i---~G~~~~~~-----~~~~~yv~Q~~~------------ 192 (723)
+.+|++++|+||||||||||+|+|+|+.+|+. |+|.+ +|+..... .+.++|++|.+.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~---G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLRV---SEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcccccccc---cceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 44799999999999999999999999998874 99999 88764321 124789999864
Q ss_pred ----cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCCH
Q 004929 193 ----LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPC 250 (723)
Q Consensus 193 ----l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSG 250 (723)
++|.+|+ ||+.|+. +. . ..+...++.++++.++|. +..++.+. .||+
T Consensus 243 ~~~~l~~~~~~-~n~~~~~-~~-~--~~e~~~~v~~~l~~~~L~~~~~~~~~~------~lse 294 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSD-CN-H--VDEPECGVKEAVENGEIAESRYENYVK------MFYE 294 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTT-CC-S--SSCSSCHHHHHHHHTSSCHHHHHHHHH------HHHH
T ss_pred HHHHHHHhccc-ccCcCCC-Cc-C--CCCCCcHHHHHHHcCCCCHHHHHHHHH------HHHH
Confidence 6889999 9887642 11 1 112345689999999995 67776543 6764
No 144
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.04 E-value=3.9e-11 Score=127.37 Aligned_cols=115 Identities=22% Similarity=0.248 Sum_probs=68.1
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCCC---c-eEEEEcCCCccCC----CCCH
Q 004929 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV---NGAKSEMPY---G-SYGFVERETTLIG----SLTV 199 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i---~G~~~~~~~---~-~~~yv~Q~~~l~~----~lTV 199 (723)
+.+.+|++++|+||||+|||||+|+|+|..++.. |+|.+ +|+...... + ..+|++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRT---NEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccc---cceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 4566899999999999999999999999988764 99998 776532211 1 1689999987765 6899
Q ss_pred HHHH--HHHHH------hcCCC--ccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004929 200 REYL--YYSAL------LQLPG--FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 200 ~E~l--~~~~~------~~~~~--~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
|++ .|+.. ++... ...+....++++++.++|.+.+..... .++.|++||
T Consensus 245 -e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~------~lls~~~~~ 303 (307)
T 1t9h_A 245 -EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYV------EFMTEIKDR 303 (307)
T ss_dssp -HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH------HHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHH------HHHHHHhhc
Confidence 888 34311 11111 111234568999999999875544322 677787763
No 145
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.03 E-value=1.2e-12 Score=141.00 Aligned_cols=148 Identities=22% Similarity=0.190 Sum_probs=95.4
Q ss_pred cceeeceeeEEeCC-------cEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeC-----CCCCceEEEEcC
Q 004929 123 DKVVKSSNGYALPG-------TMTVIMGPAKSGKSTLLRAIAGRLPHS-ARMYGEVFVNGAKS-----EMPYGSYGFVER 189 (723)
Q Consensus 123 ~~iL~~vs~~v~~G-------e~~aIlGpsGsGKSTLL~~L~G~~~~~-~~~~G~I~i~G~~~-----~~~~~~~~yv~Q 189 (723)
+.+++++++.+++| +.++|.||||+|||||+++|+|.+... ...+|.+..++.+. ......+.+++|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 45788888888776 899999999999999999999986221 01246665555432 112346899999
Q ss_pred CCccCCCCCHHHHHHHHHHhcCCC---ccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 004929 190 ETTLIGSLTVREYLYYSALLQLPG---FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRP 266 (723)
Q Consensus 190 ~~~l~~~lTV~E~l~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P 266 (723)
.+.+.+ ++.|++.......... ......+.++..++.++|.. +.+. +..||+|+|||+.++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~------~~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR------SGLLSSPLRSRFGII------- 174 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESC------GGGSCHHHHTTCSEE-------
T ss_pred hhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCC------cccCCHHHHHhcCce-------
Confidence 888765 7888885433221100 00012233444555555544 4443 348999999998665
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 004929 267 HVLFIDEPLYHLDSVSALLMMVTLKKLAS 295 (723)
Q Consensus 267 ~lLlLDEPTsgLD~~~~~~i~~~L~~l~~ 295 (723)
.+||+.+..++.+.|++.++
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999875
No 146
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.02 E-value=2e-13 Score=149.63 Aligned_cols=169 Identities=17% Similarity=0.136 Sum_probs=114.6
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCC------C---CCCceeEEEECCEeCC------CCCce---EEEEcCCCcc
Q 004929 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLP------H---SARMYGEVFVNGAKSE------MPYGS---YGFVERETTL 193 (723)
Q Consensus 132 ~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~------~---~~~~~G~I~i~G~~~~------~~~~~---~~yv~Q~~~l 193 (723)
.+++|+.++|+|+||||||||+|+|+|... | -....|.|.++|.... ...+. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 456899999999999999999999999321 0 0123699999884210 11222 2466777888
Q ss_pred CCCCCHHHHH--HHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC--cEE
Q 004929 194 IGSLTVREYL--YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRP--HVL 269 (723)
Q Consensus 194 ~~~lTV~E~l--~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P--~lL 269 (723)
.+..+..|.+ .|...++.. +.++..++..+ +.....+||+. +| +++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~----------d~il~Vvd~~~--------d~~i~~v~~~~------------dP~~di~ 145 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV----------DAIYQVVRAFD--------DAEIIHVEGDV------------DPIRDLS 145 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC----------SEEEEEEECCC--------TTCSSCCSSSS------------CHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH----------HHHHHHHhccc--------cceeeeecccc------------Ccchhhh
Confidence 8777766655 332222210 00111111111 11223456543 89 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHH-HHcCCEEEEEEeCChHHHHhcCCEEE-EEeCC-eEEEEeChh
Q 004929 270 FIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTEVFGLFDRIC-LLSNG-NTLFFGETL 333 (723)
Q Consensus 270 lLDEPTsgLD~~~~~~i~~~L~~l-~~~g~tvi~t~h~~~~~i~~~~D~v~-vL~~G-~iv~~G~~~ 333 (723)
++|||+.++|+......++.++.+ .+.|.|++ +|.. .++.++||++. +|.+| ++++.|+..
T Consensus 146 ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 146 IIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCC
Confidence 999999999999999999999998 77777754 5654 67889999999 99999 998877653
No 147
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.01 E-value=1.5e-13 Score=144.02 Aligned_cols=126 Identities=17% Similarity=0.176 Sum_probs=84.2
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC-----ceEEEEcCCC-ccCCC
Q 004929 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY-----GSYGFVERET-TLIGS 196 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~-----~~~~yv~Q~~-~l~~~ 196 (723)
..+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.+..... +.+++++|.. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 45889999999999 999999999999999999998765 78999986542211 2345555543 33444
Q ss_pred CCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 004929 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (723)
Q Consensus 197 lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTs 276 (723)
+++.|++.... +. ...... + .+.+..++.+. .|||||+||+.|++++..+|++| ||++.
T Consensus 106 i~~~Deid~~~----~~---r~~~~~----~--~~~~~~~~~l~------~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 106 VIFFDEVDALC----PR---RSDRET----G--ASVRVVNQLLT------EMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEEETCTTTC----C------------------CTTHHHHHHH------HHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred eEeeehhhhhh----cc---cCCCcc----h--HHHHHHHHHHH------hhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 44444442210 00 000000 0 12344555443 89999999999999999999985 98864
No 148
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.00 E-value=4.1e-13 Score=133.70 Aligned_cols=57 Identities=14% Similarity=0.206 Sum_probs=42.2
Q ss_pred HHH-HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 004929 258 IAR-ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (723)
Q Consensus 258 IA~-aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (723)
+++ +++.+|++++|||+|+++|..+...|.+.|.++.++ +...|.+ ..+|+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 455 677788888889999999999999999999887653 1112311 56999988753
No 149
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.97 E-value=1.1e-09 Score=122.85 Aligned_cols=173 Identities=12% Similarity=0.056 Sum_probs=110.1
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 004929 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG-EVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G-~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (723)
...|+++.+-+.+|+++.|.|++|+|||||+..|++...+.. | .|.+ +.-+ ++..+
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~---g~~Vl~--------------~s~E------~s~~~ 246 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT---NENVAI--------------FSLE------MSAQQ 246 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS---SCCEEE--------------EESS------SCHHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC---CCcEEE--------------EECC------CCHHH
Confidence 457888888899999999999999999999999998654311 3 2332 2211 22222
Q ss_pred HHHH--HHHhcC-------CCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHh--hCCcEEE
Q 004929 202 YLYY--SALLQL-------PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV--MRPHVLF 270 (723)
Q Consensus 202 ~l~~--~~~~~~-------~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~--~~P~lLl 270 (723)
...- +..... .........++.+.++.++..+..-. ...++|.+|.+ +.++.++ .+|++++
T Consensus 247 l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~------d~~~~s~~~i~--~~~~~l~~~~~~~liv 318 (454)
T 2r6a_A 247 LVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYID------DTPSIRVSDIR--AKCRRLKQESGLGMIV 318 (454)
T ss_dssp HHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEE------CCTTCCHHHHH--HHHHHHHTTTCCCEEE
T ss_pred HHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEE------CCCCCCHHHHH--HHHHHHHHHcCCCEEE
Confidence 2211 101111 10111123345555555543222111 12479999987 5667776 6899999
Q ss_pred EeCCCCCCC--------HHHHHHHHHHHHHHHH-cCCEEEEEEeC-----------Ch-------HHHHhcCCEEEEEeC
Q 004929 271 IDEPLYHLD--------SVSALLMMVTLKKLAS-TGCTLLFTINQ-----------SS-------TEVFGLFDRICLLSN 323 (723)
Q Consensus 271 LDEPTsgLD--------~~~~~~i~~~L~~l~~-~g~tvi~t~h~-----------~~-------~~i~~~~D~v~vL~~ 323 (723)
+|+++...+ ......+.+.|+.+++ .|.+||+++|- |. ..+.+.+|.|++|..
T Consensus 319 ID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r 398 (454)
T 2r6a_A 319 IDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398 (454)
T ss_dssp EECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred EccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence 999999874 2344678888888885 58999997771 32 146778999999987
Q ss_pred CeE
Q 004929 324 GNT 326 (723)
Q Consensus 324 G~i 326 (723)
++.
T Consensus 399 ~~~ 401 (454)
T 2r6a_A 399 DDY 401 (454)
T ss_dssp TTC
T ss_pred ccc
Confidence 654
No 150
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.95 E-value=3.2e-10 Score=120.50 Aligned_cols=113 Identities=17% Similarity=0.129 Sum_probs=79.6
Q ss_pred eeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHH
Q 004929 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSAL 208 (723)
Q Consensus 129 vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~ 208 (723)
+++..++|++++|+|+|||||||+++.|++.+.+.+ |+|.+.+.+.. +. ...|
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g---~kV~lv~~D~~---r~--------------~a~e------- 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG---KSVVLAAADTF---RA--------------AAIE------- 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEECTT---CH--------------HHHH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcC---CEEEEEccccc---cH--------------HHHH-------
Confidence 344556899999999999999999999999987653 77877665421 00 0111
Q ss_pred hcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH---HHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 004929 209 LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV---RIARELVMRPHVLFIDEPLYHLDSVSALL 285 (723)
Q Consensus 209 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv---~IA~aL~~~P~lLlLDEPTsgLD~~~~~~ 285 (723)
.+..+.+.+++.. ....|||+.+++ +|++++..+|+++|+|||.. ......
T Consensus 150 ------------qL~~~~~~~gl~~-----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~ 203 (306)
T 1vma_A 150 ------------QLKIWGERVGATV-----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKN 203 (306)
T ss_dssp ------------HHHHHHHHHTCEE-----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHH
T ss_pred ------------HHHHHHHHcCCcE-----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHH
Confidence 1223344445432 125789999999 99999999999999999974 345556
Q ss_pred HHHHHHHHH
Q 004929 286 MMVTLKKLA 294 (723)
Q Consensus 286 i~~~L~~l~ 294 (723)
+++.|+++.
T Consensus 204 l~~eL~~l~ 212 (306)
T 1vma_A 204 LMEELRKVH 212 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666654
No 151
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.95 E-value=3e-09 Score=107.89 Aligned_cols=60 Identities=25% Similarity=0.289 Sum_probs=44.9
Q ss_pred hCCcEEEEeCCCCCC--CHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHH-------HHhcCCEEEEEeC
Q 004929 264 MRPHVLFIDEPLYHL--DSVSALLMMVTLKKLA-STGCTLLFTINQSSTE-------VFGLFDRICLLSN 323 (723)
Q Consensus 264 ~~P~lLlLDEPTsgL--D~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~-------i~~~~D~v~vL~~ 323 (723)
.+|+++++|||++.+ |+....+++..|.+++ +.|.|||+++|..... +.+.+|.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 6655566666666665 6689999988876531 4678999999964
No 152
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.93 E-value=1.1e-11 Score=131.89 Aligned_cols=94 Identities=16% Similarity=0.169 Sum_probs=74.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEE-------------------eCCcEEEEECCCCCcHHHHHHHHHcCCC--CC
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYA-------------------LPGTMTVIMGPAKSGKSTLLRAIAGRLP--HS 163 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v-------------------~~Ge~~aIlGpsGsGKSTLL~~L~G~~~--~~ 163 (723)
.++++||++.|. ++++++++.+ .+|+++||+||||||||||+++|+|++. |+
T Consensus 37 ~i~~~~v~~~y~-------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 37 DLSLEEVAEIYL-------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp TCCHHHHHHTHH-------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccchHhHHHHHH-------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 477888887662 5889999887 8999999999999999999999999877 65
Q ss_pred CCceeEEEE---CCEeCCC-CCceEEEEcCCCccCCCCCHHHHHHHHHHh
Q 004929 164 ARMYGEVFV---NGAKSEM-PYGSYGFVERETTLIGSLTVREYLYYSALL 209 (723)
Q Consensus 164 ~~~~G~I~i---~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~ 209 (723)
+ |+|.+ +|..... ..+.++++ |+..+++.+|+.+++.+...+
T Consensus 110 ~---G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 110 H---RRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp C---CCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHH
T ss_pred C---CeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHH
Confidence 4 99999 8764311 11346777 777777889999999776544
No 153
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.89 E-value=2.8e-09 Score=112.70 Aligned_cols=118 Identities=14% Similarity=0.057 Sum_probs=82.5
Q ss_pred eceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHH
Q 004929 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYS 206 (723)
Q Consensus 127 ~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~ 206 (723)
+++++. +|++++|+|+||+||||++..|+|.+.+.+ |+|.+.+.+.... .++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~---~~v~l~~~d~~~~----------------~~~-~ql--- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKG---RRPLLVAADTQRP----------------AAR-EQL--- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTT---CCEEEEECCSSCH----------------HHH-HHH---
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEecCCcccH----------------hHH-HHH---
Confidence 678887 899999999999999999999999987653 8888876543110 000 111
Q ss_pred HHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC-CCCCCHHHHHH
Q 004929 207 ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP-LYHLDSVSALL 285 (723)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEP-TsgLD~~~~~~ 285 (723)
..+.+..++..... + .+-.-.+.+|.+|+.+...+++++|+||| ++++|......
T Consensus 146 ----------------~~~~~~~~l~~~~~---~-----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~ 201 (295)
T 1ls1_A 146 ----------------RLLGEKVGVPVLEV---M-----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGE 201 (295)
T ss_dssp ----------------HHHHHHHTCCEEEC---C-----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHH
T ss_pred ----------------HHhcccCCeEEEEc---C-----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHH
Confidence 11223334432110 0 12234466789999998899999999999 99999988888
Q ss_pred HHHHHHHH
Q 004929 286 MMVTLKKL 293 (723)
Q Consensus 286 i~~~L~~l 293 (723)
+.+..+.+
T Consensus 202 l~~~~~~~ 209 (295)
T 1ls1_A 202 LARLKEVL 209 (295)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhhc
Confidence 87777665
No 154
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.80 E-value=9.7e-11 Score=135.91 Aligned_cols=159 Identities=18% Similarity=0.107 Sum_probs=98.5
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCc---------
Q 004929 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETT--------- 192 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~--------- 192 (723)
...+++++++.+.+|+.++|+||||+|||||+++|+|.+++.. .|.+.+++.+.......++++++...
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~--~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~ 123 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET--LEDILVFPNPEDENMPRIKTVPACQGRRIVEKYRE 123 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS--CEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCccc--CCeEEEeCCcccccCCcEEEEecchHHHHHHHHHH
Confidence 3568899999999999999999999999999999999987652 48888888765443445788776431
Q ss_pred -------------cCCCCCHHHHHHHHHHhcCCCcc-chHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004929 193 -------------LIGSLTVREYLYYSALLQLPGFF-CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 193 -------------l~~~lTV~E~l~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
.+..+++.+|+.....-..+... ..... ..-+.+|..+... ....++|+|++|++..
T Consensus 124 ~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~---~~~~L~G~~~~~~------~~~g~~~~g~~~~i~~ 194 (604)
T 3k1j_A 124 KAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGA---HAGALLGDVRHDP------FQSGGLGTPAHERVEP 194 (604)
T ss_dssp HHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTC---CHHHHHCEECCCC------C----CCCCGGGGEEC
T ss_pred hhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCC---CHHhcCceEEech------hhcCCccccccccccC
Confidence 11111111111000000000000 00000 0011112111100 1124799999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 004929 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~ 292 (723)
++....++.+||+||... |++..+..+.+.|.+
T Consensus 195 g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999988 899888888777764
No 155
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.80 E-value=5.5e-09 Score=113.02 Aligned_cols=148 Identities=23% Similarity=0.253 Sum_probs=87.5
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhc
Q 004929 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~ 210 (723)
+-+++|+++.|.||+|||||||+..++......+ |. +.|+.-+..+.+ . ++
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g---~~--------------vlyi~~E~~~~~------~--~a---- 106 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAG---GI--------------AAFIDAEHALDP------E--YA---- 106 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT---CC--------------EEEEESSCCCCH------H--HH----
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC---Ce--------------EEEEECCCCcCH------H--HH----
Confidence 3678999999999999999999888876432211 22 333333321110 0 01
Q ss_pred CCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC--CcEEEEeCCCCCC----------
Q 004929 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR--PHVLFIDEPLYHL---------- 278 (723)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~--P~lLlLDEPTsgL---------- 278 (723)
+.+|+.. .+-.+- ...+.. +-+.++++++.+ |+++++||+++.+
T Consensus 107 ----------------~~lG~~~-~~l~i~-----~~~~~e--~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~g 162 (349)
T 2zr9_A 107 ----------------KKLGVDT-DSLLVS-----QPDTGE--QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMG 162 (349)
T ss_dssp ----------------HHTTCCG-GGCEEE-----CCSSHH--HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC--
T ss_pred ----------------HHcCCCH-HHeEEe-----cCCCHH--HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccc
Confidence 1122210 000010 012332 345678888765 9999999999998
Q ss_pred CH---HHHHHHHHHHHHH----HHcCCEEEEEEeCChH---------------HHHhcCCEEEEEeCCeEEEEeC
Q 004929 279 DS---VSALLMMVTLKKL----ASTGCTLLFTINQSST---------------EVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 279 D~---~~~~~i~~~L~~l----~~~g~tvi~t~h~~~~---------------~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
|+ ..+..+.+.+++| .+.|.|||++.|.... .+.++||.++.++.++++..|+
T Consensus 163 d~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 163 DSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 33 2223445555555 3568999998775431 2567899999998877665554
No 156
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.79 E-value=2.9e-10 Score=128.26 Aligned_cols=177 Identities=15% Similarity=0.056 Sum_probs=102.2
Q ss_pred ceeeEEeCCcEEEEECCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCC--CHHHHH
Q 004929 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSL--TVREYL 203 (723)
Q Consensus 128 ~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G--~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~l--TV~E~l 203 (723)
.+++.+..+..++|.|++||||||++++|.. +...+. |++.+.+.+.+.. . .+....+|++ +|.++.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p---~~v~l~liDpK~~-e-----l~~~~~lPhl~~~Vvtd~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQP---EDVRFIMIDPKML-E-----LSVYEGIPHLLTEVVTDM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCT---TTEEEEEECCSSS-G-----GGGGTTCTTBSSSCBCSH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCC---ceEEEEEECCchh-h-----hhhhccCCcccceeecCH
Confidence 3667777899999999999999999999875 333322 6666555442210 0 0000111221 122222
Q ss_pred HHHHH-hcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH----------HHHHHHhhCCc-EEEE
Q 004929 204 YYSAL-LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV----------RIARELVMRPH-VLFI 271 (723)
Q Consensus 204 ~~~~~-~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv----------~IA~aL~~~P~-lLlL 271 (723)
..+.. ++. ...+.++| .+++...|+.+..+..- .....+||||+||. .+++++...|. ++++
T Consensus 230 ~~a~~~L~~--~~~EmerR-~~ll~~~Gv~~i~~yn~---~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvI 303 (512)
T 2ius_A 230 KDAANALRW--CVNEMERR-YKLMSALGVRNLAGYNE---KIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLV 303 (512)
T ss_dssp HHHHHHHHH--HHHHHHHH-HHHHHHTTCSSHHHHHH---HHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEE
T ss_pred HHHHHHHHH--HHHHHHHH-HHHHHHcCCccHHHHHH---HHHHHhhcCCcccccccccccchhccccccccCCcEEEEE
Confidence 11111 110 01122233 47788888876544210 01125788887752 35666778898 8999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHc----CCEEEEEEeCChHH-----H-HhcCCEEEE
Q 004929 272 DEPLYHLDSVSALLMMVTLKKLAST----GCTLLFTINQSSTE-----V-FGLFDRICL 320 (723)
Q Consensus 272 DEPTsgLD~~~~~~i~~~L~~l~~~----g~tvi~t~h~~~~~-----i-~~~~D~v~v 320 (723)
||++.-+|.. ...+.+.|.++++. |.++|+++|.|..+ + .++.+||++
T Consensus 304 DE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 304 DEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp ETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred eCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 9999998843 35566677766543 67899999998622 3 345566655
No 157
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.78 E-value=1.9e-09 Score=120.78 Aligned_cols=51 Identities=14% Similarity=-0.023 Sum_probs=47.2
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 004929 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~ 177 (723)
..+|+++|+.+++ |+++|+|||||||||||++|+|+++|+. |+|.++|++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDL---TLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCT---TTCCCCCTTS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCC---CEEEECCEEc
Confidence 3589999999999 9999999999999999999999999875 9999999764
No 158
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.77 E-value=6.5e-09 Score=109.92 Aligned_cols=141 Identities=13% Similarity=0.110 Sum_probs=86.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCC
Q 004929 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPG 213 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~ 213 (723)
++|++++|+|+||+||||+++.|++.+.+.. | +.+.++.++.. ..++.|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~---G-------------~~V~lv~~D~~---r~~a~eqL~~~~------ 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEK---H-------------KKIAFITTDTY---RIAAVEQLKTYA------ 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTT---C-------------CCEEEEECCCS---STTHHHHHHHHH------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhc---C-------------CEEEEEecCcc---cchHHHHHHHHH------
Confidence 4799999999999999999999999886532 5 23455555442 335556554321
Q ss_pred ccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 004929 214 FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293 (723)
Q Consensus 214 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l 293 (723)
+..|+... ...+. ..-+.+|++ +.+|+++|+| |+|+|+.....+.++.+-+
T Consensus 158 -------------~~~gl~~~-----------~~~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l 208 (296)
T 2px0_A 158 -------------ELLQAPLE-----------VCYTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETI 208 (296)
T ss_dssp -------------TTTTCCCC-----------BCSSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHS
T ss_pred -------------HhcCCCeE-----------ecCCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHH
Confidence 11222110 01122 333555554 5999999999 9999987665554444333
Q ss_pred H---HcCCEEEE-EEeCChHHHHhcCCEEEEEeCCeEEEE
Q 004929 294 A---STGCTLLF-TINQSSTEVFGLFDRICLLSNGNTLFF 329 (723)
Q Consensus 294 ~---~~g~tvi~-t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (723)
. ..+.++++ ++|. ..++.+.+|++..+..|.++..
T Consensus 209 ~~~~~~~~~lVl~at~~-~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 209 PFESSIQSFLVLSATAK-YEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp CCCTTEEEEEEEETTBC-HHHHHHHTTTTSSSCCCEEEEE
T ss_pred hhcCCCeEEEEEECCCC-HHHHHHHHHHHhcCCCCEEEEe
Confidence 2 22334444 2444 3567777887766666777754
No 159
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.63 E-value=2.1e-09 Score=106.28 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=43.9
Q ss_pred eeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----CCCceEEEEcCCCccCCCCCHHHH
Q 004929 130 NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-----MPYGSYGFVERETTLIGSLTVREY 202 (723)
Q Consensus 130 s~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~-----~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (723)
|+.+.+|++++|+||||||||||+++|+|+.+ .+.++|.... .....++|++|+...++.+++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA 71 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence 45567899999999999999999999999864 2444553321 112357888887766555554443
No 160
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.62 E-value=1.3e-09 Score=106.95 Aligned_cols=38 Identities=21% Similarity=0.168 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 004929 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l 293 (723)
+.+.+|++|+.+|+++++| ||++|.....++++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3477899999999999999 9999999999999988763
No 161
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.59 E-value=2.8e-11 Score=126.54 Aligned_cols=123 Identities=15% Similarity=0.128 Sum_probs=77.0
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C----CceEEEEcCCCc-cCCC
Q 004929 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P----YGSYGFVERETT-LIGS 196 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~-~----~~~~~yv~Q~~~-l~~~ 196 (723)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+... . .+.+++++|+.. ..+.
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 45889999999999 99999999999999999999875 2889998864210 0 122445555532 4455
Q ss_pred CCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 004929 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHV 268 (723)
Q Consensus 197 lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~l 268 (723)
+++.|++......+... .....+...+. .++.+ ..|||||+||+.|++++..+|++
T Consensus 135 i~~iDeid~l~~~~~~~-~~~~~~~~~~~---------~~~ll------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSG-VGGGNDEREQT---------LNQLL------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEETHHHHHCC---------CHHHHHH---------HHHHH------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EEehhhhHhhhcccccc-cCCcchHHHHH---------HHHHH------HHHhCCCCCCCEEEEEecCCchh
Confidence 56666663221111000 00000011111 12222 26899999999999999999976
No 162
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.54 E-value=4.3e-11 Score=123.13 Aligned_cols=123 Identities=15% Similarity=0.128 Sum_probs=75.3
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C----CceEEEEcCCC-ccCCC
Q 004929 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P----YGSYGFVERET-TLIGS 196 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~-~----~~~~~yv~Q~~-~l~~~ 196 (723)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+... . .+.+++++|.. ...+.
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 35789999999999 99999999999999999999875 2889988754210 0 11234455542 23445
Q ss_pred CCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 004929 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHV 268 (723)
Q Consensus 197 lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~l 268 (723)
+++.|++......+.... ....+...+. .+... ..|||||+||+.|++++..+|++
T Consensus 111 i~~~Deid~l~~~~~~~~-~~~~~~~~~~---------~~~ll------~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGV-GGGNDEREQT---------LNQLL------VEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp EEEEETHHHHHC----------CHHHHHH---------HHHHH------HHHHTCCTTCCEEEEEEESCGGG
T ss_pred EEEehhhhhhhcccCccc-cccchHHHHH---------HHHHH------HHHhCCCCCCCEEEEEccCCchh
Confidence 555555532211110000 0000001111 12222 26889999999999999999986
No 163
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.46 E-value=4.3e-08 Score=106.03 Aligned_cols=32 Identities=28% Similarity=0.320 Sum_probs=28.4
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 004929 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
+-+.+|+++.|.||+|||||||+..+++...+
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35779999999999999999999999987654
No 164
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.44 E-value=4.8e-08 Score=98.92 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=23.3
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHH-cCCCC
Q 004929 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA-GRLPH 162 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~-G~~~~ 162 (723)
.+..+++|+.+++|++++|+||||||||||+++|+ |+.++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 35678999999999999999999999999999999 98754
No 165
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.39 E-value=3.8e-07 Score=102.41 Aligned_cols=59 Identities=20% Similarity=0.211 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----HcCCEEEEEEeCCh
Q 004929 250 CGERRRVRIARELVMRPHVLFIDEP----------LYHLDSVSALLMMVTLKKLA----STGCTLLFTINQSS 308 (723)
Q Consensus 250 GGerqRv~IA~aL~~~P~lLlLDEP----------TsgLD~~~~~~i~~~L~~l~----~~g~tvi~t~h~~~ 308 (723)
|++++|..+++|....|.|||+||+ +.|.|......+.++|..+. ..+..||.++|.|.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5778888899999999999999999 44677777777777777763 34677888888763
No 166
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.34 E-value=1.5e-07 Score=92.59 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=32.7
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 004929 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~ 294 (723)
...|++|+.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887754
No 167
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.30 E-value=9e-07 Score=95.04 Aligned_cols=127 Identities=12% Similarity=0.170 Sum_probs=83.3
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHH
Q 004929 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (723)
.-|+.+.+-+.+|+++.|.|++|+|||||+.-++....... +. +.|+.- .++..+..
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g---~~--------------Vl~fSl------Ems~~ql~ 90 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDD---RG--------------VAVFSL------EMSAEQLA 90 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT---CE--------------EEEEES------SSCHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---Ce--------------EEEEeC------CCCHHHHH
Confidence 45666666788999999999999999999988876432111 22 333221 23443322
Q ss_pred HHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 004929 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (723)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~ 283 (723)
.++......+.+.+..+ | .||.+|.+|+..|...+.++++.+.|+|... .
T Consensus 91 ----------------~Rlls~~~~v~~~~l~~---g------~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i 140 (338)
T 4a1f_A 91 ----------------LRALSDLTSINMHDLES---G------RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----I 140 (338)
T ss_dssp ----------------HHHHHHHHCCCHHHHHH---T------CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----H
T ss_pred ----------------HHHHHHhhCCCHHHHhc---C------CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----H
Confidence 11212222233333332 2 7999999999999999999999999998654 3
Q ss_pred HHHHHHHHHHHHc--CCEEEEE
Q 004929 284 LLMMVTLKKLAST--GCTLLFT 303 (723)
Q Consensus 284 ~~i~~~L~~l~~~--g~tvi~t 303 (723)
.+|...++++.++ |..+|++
T Consensus 141 ~~i~~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 141 EQIRLQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEE
Confidence 3677777777654 5666664
No 168
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.30 E-value=2.1e-08 Score=101.96 Aligned_cols=57 Identities=16% Similarity=0.078 Sum_probs=39.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~ 177 (723)
.++++|++..+. . ++.+.+ ++++|+|||||||||||++|+|++.|+. |+|.++|.+.
T Consensus 9 ~l~l~~~~~~~~-------~-----~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~---G~i~~~g~~~ 65 (227)
T 1qhl_A 9 SLTLINWNGFFA-------R-----TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDL---TLLHFRNTTE 65 (227)
T ss_dssp EEEEEEETTEEE-------E-----EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCT---TTC-------
T ss_pred EEEEEeeecccC-------C-----EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCC---CeEEECCEEc
Confidence 467777754331 0 344556 8999999999999999999999998875 9999998764
No 169
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.28 E-value=2.6e-07 Score=109.93 Aligned_cols=81 Identities=15% Similarity=0.140 Sum_probs=62.4
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE-e
Q 004929 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLY-HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL-S 322 (723)
Q Consensus 245 ~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL-~ 322 (723)
+.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.......++++++.+++...+.+++++..++ .
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~vi~v 267 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAV 267 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCCEEEC
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCCCcccc
Confidence 44689999999999999999999999999996 999888777777776665556788887555656777777753333 2
Q ss_pred CCe
Q 004929 323 NGN 325 (723)
Q Consensus 323 ~G~ 325 (723)
.|+
T Consensus 268 ~gr 270 (773)
T 2xau_A 268 PGR 270 (773)
T ss_dssp CCC
T ss_pred cCc
Confidence 443
No 170
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.21 E-value=5.1e-06 Score=88.38 Aligned_cols=37 Identities=11% Similarity=-0.031 Sum_probs=31.5
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC
Q 004929 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
..-|+++.+-+.+|+++.|.|++|+|||||+..++..
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3467777777899999999999999999999888753
No 171
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.21 E-value=4.1e-08 Score=97.19 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=31.8
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 004929 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~ 177 (723)
.++|++++|+||||||||||+++|+|.+ |.+.++|.+.
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~ 63 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAF 63 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGG
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEccccc
Confidence 3479999999999999999999999975 7788887643
No 172
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.20 E-value=1.5e-07 Score=97.02 Aligned_cols=52 Identities=21% Similarity=0.265 Sum_probs=36.0
Q ss_pred eEEEEeE-EEEEecccccccceeeceeeEEeC---CcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 105 SVVWKDL-TVTIKGKRRYSDKVVKSSNGYALP---GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 105 ~l~~~~l-s~~~~~~~~~~~~iL~~vs~~v~~---Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++++|+ ++.|. ....+|+|+|+.+++ |+.++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~----~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD----EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec----CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5889999 99882 235799999999999 9999999999999999999999865
No 173
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.16 E-value=2.4e-06 Score=92.74 Aligned_cols=148 Identities=14% Similarity=0.147 Sum_probs=82.8
Q ss_pred CcE-EEEECCCCCcHHHHHHHHHcCCCCC--------CCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHH
Q 004929 136 GTM-TVIMGPAKSGKSTLLRAIAGRLPHS--------ARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYS 206 (723)
Q Consensus 136 Ge~-~aIlGpsGsGKSTLL~~L~G~~~~~--------~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~ 206 (723)
|-. ++|+|++|||||||+|.|+|..... ...+|.|.++|.+... ....|++.+.+ ...|.. ..-.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l-~DT~G~i~~lp----~~lve~-f~~t 251 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML-VDTVGFIRGIP----PQIVDA-FFVT 251 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE-EECCCBCSSCC----GGGHHH-HHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE-EeCCCchhcCC----HHHHHH-HHHH
Confidence 444 9999999999999999999986421 0246899998864311 01234333321 111221 1100
Q ss_pred H-HhcC----------CCcc---chHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHH----HHH-hhCCc
Q 004929 207 A-LLQL----------PGFF---CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA----REL-VMRPH 267 (723)
Q Consensus 207 ~-~~~~----------~~~~---~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA----~aL-~~~P~ 267 (723)
. ..+. .... ....+.+.++++.+++.+..--.+. + ....+|+|+++|+.++ +++ ..+|+
T Consensus 252 l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~-N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~ 329 (364)
T 2qtf_A 252 LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTL-N-KIDKINGDLYKKLDLVEKLSKELYSPIFD 329 (364)
T ss_dssp HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEE-E-CGGGCCSCHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEE-E-CCCCCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 0 0110 0000 0112235667777776543200111 1 1225788888988887 554 33445
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 004929 268 VLFIDEPLYHLDSVSALLMMVTLKKLAS 295 (723)
Q Consensus 268 lLlLDEPTsgLD~~~~~~i~~~L~~l~~ 295 (723)
+ +|+|++|......+.+.|.++..
T Consensus 330 ~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 330 V----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp E----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred E----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4 89999999999999999988764
No 174
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.12 E-value=4.4e-06 Score=90.39 Aligned_cols=58 Identities=9% Similarity=0.033 Sum_probs=45.9
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEe-CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEE
Q 004929 245 MKGLPCGERRRVRIARELVMRPHVLFID-EPLYHLDSVSALLMMVTLKKLASTGCTLLFTI 304 (723)
Q Consensus 245 ~~~LSGGerqRv~IA~aL~~~P~lLlLD-EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~ 304 (723)
+..+|+||+|++. +.+...++-++++| ++++|+|...+..+++.++.... +..+|++.
T Consensus 229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~ 287 (357)
T 2e87_A 229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVI 287 (357)
T ss_dssp STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEE
T ss_pred hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEE
Confidence 3478999999886 55556777889999 99999999998888888777654 66666666
No 175
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.07 E-value=8.4e-07 Score=86.72 Aligned_cols=27 Identities=41% Similarity=0.656 Sum_probs=25.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCC
Q 004929 136 GTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
|++++|+||||||||||+++|+|++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999999864
No 176
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.04 E-value=2.7e-07 Score=91.23 Aligned_cols=51 Identities=25% Similarity=0.298 Sum_probs=40.7
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE--EECCEeC
Q 004929 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV--FVNGAKS 177 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I--~i~G~~~ 177 (723)
....+.++...++|++++|+||||||||||+++|++++.. .|.+ .++|.+.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~----~G~~~~~~d~d~~ 64 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ----KGKLCYILDGDNV 64 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh----cCceEEEecCchh
Confidence 3455666777789999999999999999999999998763 2766 7777543
No 177
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.03 E-value=9.1e-07 Score=94.45 Aligned_cols=76 Identities=13% Similarity=0.058 Sum_probs=54.8
Q ss_pred eeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--------------CceEEEE-cCC
Q 004929 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--------------YGSYGFV-ERE 190 (723)
Q Consensus 126 L~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--------------~~~~~yv-~Q~ 190 (723)
++++++.+++|++++|+|+||+||||++..|++.+.+.+ |+|.+.+.+.... ...+.++ .|.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g---~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELG---YKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTT---CCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 368888889999999999999999999999999887654 8898877553210 2346777 565
Q ss_pred CccCCCCCHHHHHH
Q 004929 191 TTLIGSLTVREYLY 204 (723)
Q Consensus 191 ~~l~~~lTV~E~l~ 204 (723)
....|..++.+++.
T Consensus 172 ~~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 172 LNADPASVVFDAIK 185 (320)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 44444444445443
No 178
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.01 E-value=4.7e-06 Score=80.60 Aligned_cols=39 Identities=33% Similarity=0.175 Sum_probs=34.4
Q ss_pred cee--eceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC
Q 004929 124 KVV--KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (723)
Q Consensus 124 ~iL--~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~ 163 (723)
..+ +++++.+.+| +++|+||||||||||+++|.+++.+.
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 356 7889999999 99999999999999999999987653
No 179
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.99 E-value=3.2e-05 Score=83.16 Aligned_cols=142 Identities=15% Similarity=0.171 Sum_probs=77.1
Q ss_pred eecee-eEEeCCcEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHH
Q 004929 126 VKSSN-GYALPGTMTVIMGPAKSGKSTLLRAIAGR--LPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (723)
Q Consensus 126 L~~vs-~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~--~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (723)
|+.+- +-+++|+++.|.||+|+|||||+..++.. .++.. | |. ...+.|+.-+..+ ...+.
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~---g-----g~-----~~~vlyi~~E~~~----~~~~l 173 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAG---G-----YP-----GGKIIFIDTENTF----RPDRL 173 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTT---T-----BC-----CCEEEEEESSSCC----CHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhccccc---C-----CC-----CCeEEEEECCCCC----CHHHH
Confidence 44433 56889999999999999999999998874 32210 0 00 1234455444322 12222
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHH-HHHHHHHHHHh----hCCcEEEEeCCCCC
Q 004929 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE-RRRVRIARELV----MRPHVLFIDEPLYH 277 (723)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe-rqRv~IA~aL~----~~P~lLlLDEPTsg 277 (723)
......+... .+++++.+- ..+..++.+ .+.+..++.++ .+++++++|+.++-
T Consensus 174 ~~~~~~~g~~---------~~~~l~~l~-------------~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l 231 (343)
T 1v5w_A 174 RDIADRFNVD---------HDAVLDNVL-------------YARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMAL 231 (343)
T ss_dssp HHHHHHTTCC---------HHHHHHTEE-------------EEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGG
T ss_pred HHHHHHcCCC---------HHHHHhcee-------------EeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHH
Confidence 2111111110 111222110 011223332 34555566666 56899999999987
Q ss_pred CCHH------------HHHHHHHHHHHHHH-cCCEEEEEEeC
Q 004929 278 LDSV------------SALLMMVTLKKLAS-TGCTLLFTINQ 306 (723)
Q Consensus 278 LD~~------------~~~~i~~~L~~l~~-~g~tvi~t~h~ 306 (723)
++.. ...++++.|+++++ .+.+||++.|-
T Consensus 232 ~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 232 FRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp HHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 6432 13456666677764 57888875553
No 180
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.97 E-value=3.7e-06 Score=82.75 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=27.8
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC
Q 004929 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (723)
Q Consensus 132 ~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~ 163 (723)
++.+|++++|+||||||||||+++|+++..|+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 46789999999999999999999999998553
No 181
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.96 E-value=3.4e-05 Score=82.28 Aligned_cols=142 Identities=20% Similarity=0.246 Sum_probs=78.3
Q ss_pred eeecee-eEEeCCcEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHH
Q 004929 125 VVKSSN-GYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (723)
Q Consensus 125 iL~~vs-~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~-~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (723)
.|+.+- +-+++|+++.|.||+|+|||||+..++... .+.. .| |. ...+.|+.-+..+ ...+.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~--~g-----g~-----~~~vlyi~~e~~~----~~~~l 158 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE--KG-----GL-----SGKAVYIDTEGTF----RWERI 158 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGG--GT-----CC-----SCEEEEEESSSCC----CHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccc--cC-----CC-----CCeEEEEECCCCC----CHHHH
Confidence 344433 578899999999999999999999888642 2210 01 10 1234454433322 11211
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHHcCCc--hHhhhhhcCCCCCCCCCHH-HHHHHHHHHHHh---hCCcEEEEeCCCC
Q 004929 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCG-ERRRVRIARELV---MRPHVLFIDEPLY 276 (723)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~ig~~~~~~~LSGG-erqRv~IA~aL~---~~P~lLlLDEPTs 276 (723)
... ++.+|+. +..++.. ..+..++. +.+.+..+++++ .+|+++++|+.++
T Consensus 159 ~~~--------------------~~~~g~~~~~~~~~l~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 159 ENM--------------------AKALGLDIDNVMNNIY----YIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHH--------------------HHHTTCCHHHHHHTEE----EEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHH--------------------HHHhCCCHHHHhccEE----EEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 111 1122221 1111110 11123333 335677778887 5799999999998
Q ss_pred CCCH--------H----HHHHHHHHHHHHHH-cCCEEEEEEeC
Q 004929 277 HLDS--------V----SALLMMVTLKKLAS-TGCTLLFTINQ 306 (723)
Q Consensus 277 gLD~--------~----~~~~i~~~L~~l~~-~g~tvi~t~h~ 306 (723)
-.+. . ...++++.|+++++ .+.+||++.|-
T Consensus 215 l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 215 HFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 6532 1 12455666666664 58888886553
No 182
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.95 E-value=3.3e-06 Score=83.25 Aligned_cols=39 Identities=23% Similarity=0.133 Sum_probs=24.8
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
...+++|||+.+.+|++++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 346889999999999999999999999999999999865
No 183
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.93 E-value=3.9e-06 Score=81.55 Aligned_cols=36 Identities=11% Similarity=0.186 Sum_probs=29.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i 172 (723)
+|++++|+||||||||||+++|++..++. ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeec
Confidence 69999999999999999999999987642 2355544
No 184
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.91 E-value=6.4e-05 Score=80.98 Aligned_cols=44 Identities=7% Similarity=-0.040 Sum_probs=35.4
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEEeCCh
Q 004929 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS---TGCTLLFTINQSS 308 (723)
Q Consensus 264 ~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~---~g~tvi~t~h~~~ 308 (723)
.+|.+|++||+... |......+.+.+.++.. .+.++|+++|.+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888877765 5778888888773
No 185
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.90 E-value=1.4e-06 Score=97.16 Aligned_cols=70 Identities=13% Similarity=0.216 Sum_probs=51.6
Q ss_pred hCCcEEEEeCCCCCCCH-HHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEE-EeCCeEEEEeChh
Q 004929 264 MRPHVLFIDEPLYHLDS-VSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICL-LSNGNTLFFGETL 333 (723)
Q Consensus 264 ~~P~lLlLDEPTsgLD~-~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~v-L~~G~iv~~G~~~ 333 (723)
.+|++||+||+..-.+. .++..+...+..+.+.|+.+|+++|.+..++..+.+++.- +..|.++..++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 48999999999887764 6788899999998888899999999875443333444332 4567777766653
No 186
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.86 E-value=3.8e-06 Score=83.02 Aligned_cols=80 Identities=18% Similarity=0.083 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHH-HHhcCCEEEEEeCCeEE
Q 004929 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE-VFGLFDRICLLSNGNTL 327 (723)
Q Consensus 249 SGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~-i~~~~D~v~vL~~G~iv 327 (723)
+.|+.+|..++..+..+|+.+..+ .+.++|.....+.+.++.. .+.++|+.+|...+. ....||.+++|+
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~----- 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD----- 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE-----
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE-----
Confidence 678889999998888888654332 3345555555554444332 355777766543221 256789888874
Q ss_pred EEeChhHHHHHh
Q 004929 328 FFGETLACLQHF 339 (723)
Q Consensus 328 ~~G~~~~~~~~f 339 (723)
.+++...+..
T Consensus 132 --~~~e~~~~Rl 141 (206)
T 1jjv_A 132 --VSPQTQLARS 141 (206)
T ss_dssp --CCHHHHHHHH
T ss_pred --CCHHHHHHHH
Confidence 3455555544
No 187
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.85 E-value=2.7e-06 Score=86.08 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=33.1
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 004929 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (723)
Q Consensus 132 ~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~ 176 (723)
..++|++++|.|+||||||||+++|+|+ . |+|.+.|++
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~---~----g~v~~~~~~ 53 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY---K----NDICLLTEP 53 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG---T----TTEEEECCT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc---c----CCeEEEecC
Confidence 3458999999999999999999999997 2 888888765
No 188
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.84 E-value=6.6e-08 Score=109.15 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=74.9
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC-----ceEEEEcCCCc-cCCCC
Q 004929 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY-----GSYGFVERETT-LIGSL 197 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~-----~~~~yv~Q~~~-l~~~l 197 (723)
.+++++++.+.+| +.|+||||+|||||+++|+|... .|.+.++|.+..... +.+..++|... ..|.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 5788899999999 99999999999999999999864 278888886532110 11233344321 22333
Q ss_pred CHHHHHHHHHHhcC---CCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 004929 198 TVREYLYYSALLQL---PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274 (723)
Q Consensus 198 TV~E~l~~~~~~~~---~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEP 274 (723)
.+.|++......+. ........+.+.+++ ..|||||+|+..|+++...+|++ |||+
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL-------------------~~Ldg~~~~~~viviAatn~p~~--LD~a 185 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------------VEMDGFEKDTAIVVMAATNRPDI--LDPA 185 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHH-------------------HHGGGCCSSCCCEEEECCSCGGG--SCTT
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHH-------------------HHhcccccCccEEEEEecCChhh--cCcc
Confidence 33333311000000 000001111222222 15788899998999999999987 7887
Q ss_pred CC
Q 004929 275 LY 276 (723)
Q Consensus 275 Ts 276 (723)
..
T Consensus 186 Ll 187 (499)
T 2dhr_A 186 LL 187 (499)
T ss_dssp TS
T ss_pred cc
Confidence 64
No 189
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.84 E-value=7.1e-05 Score=78.07 Aligned_cols=73 Identities=19% Similarity=0.217 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH----------HHHHHHHHHHHHHH----cCCEEEEEEeCCh---HHH
Q 004929 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSV----------SALLMMVTLKKLAS----TGCTLLFTINQSS---TEV 311 (723)
Q Consensus 249 SGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~----------~~~~i~~~L~~l~~----~g~tvi~t~h~~~---~~i 311 (723)
+++++.|..++.+...+|.+|++||+.+.++.. ....++..+..+.. .+..+|.+++.|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 356677777778888899999999998776532 22334444444321 2345566666542 234
Q ss_pred HhcCCEEEEE
Q 004929 312 FGLFDRICLL 321 (723)
Q Consensus 312 ~~~~D~v~vL 321 (723)
.+-|++++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 4456665444
No 190
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.79 E-value=2.6e-05 Score=84.35 Aligned_cols=57 Identities=9% Similarity=0.117 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC-EEEEEEeC
Q 004929 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGC-TLLFTINQ 306 (723)
Q Consensus 248 LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~-tvi~t~h~ 306 (723)
.++.++++..+++..+.+|+++++.-..+..|... ...+++++.+...|. ++++ .+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V-~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGV-LTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEE-EEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEE-EeC
Confidence 57789999999999999999877774334445443 455667777766564 5555 444
No 191
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.78 E-value=1.2e-05 Score=80.00 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=27.1
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 004929 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 47999999999999999999999999875
No 192
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.70 E-value=3.7e-06 Score=86.47 Aligned_cols=41 Identities=22% Similarity=0.339 Sum_probs=35.2
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHH---cCCCCCCCceeEEE--------ECCEeC
Q 004929 134 LPGTMTVIMGPAKSGKSTLLRAIA---GRLPHSARMYGEVF--------VNGAKS 177 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~---G~~~~~~~~~G~I~--------i~G~~~ 177 (723)
.+|++++|+|||||||||++++|+ |+..++ +|.|. .+|.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~ 76 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDI 76 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCc
Confidence 579999999999999999999999 887665 48887 777654
No 193
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.68 E-value=6.6e-06 Score=81.36 Aligned_cols=40 Identities=25% Similarity=0.201 Sum_probs=33.3
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 004929 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~ 175 (723)
.++|++++|+|+||||||||+++|++.+++.+ |.|.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~---~~v~~~~~ 58 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQG---ISVCVFHM 58 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTT---CCEEEEEG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC---CeEEEecc
Confidence 45799999999999999999999999876543 77766554
No 194
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.64 E-value=9.9e-06 Score=88.26 Aligned_cols=44 Identities=23% Similarity=0.168 Sum_probs=38.6
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 004929 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i 172 (723)
..+|+++++.+++|++++|+||||||||||+++|+|.. .|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 36899999999999999999999999999999999853 276654
No 195
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.63 E-value=1.7e-05 Score=78.57 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=25.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
+|++++|+||||||||||++.|++..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 799999999999999999999999865
No 196
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.63 E-value=1.4e-05 Score=76.67 Aligned_cols=34 Identities=32% Similarity=0.533 Sum_probs=29.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~ 175 (723)
+|++++|+|+||||||||+++|++.+ |.+.+++.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d 40 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGD 40 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCc
Confidence 69999999999999999999999864 56666653
No 197
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.62 E-value=1.4e-05 Score=90.78 Aligned_cols=155 Identities=10% Similarity=0.045 Sum_probs=83.5
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----------------------C------------CCcee
Q 004929 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH-----------------------S------------ARMYG 168 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~-----------------------~------------~~~~G 168 (723)
..++++++.+.+| +++|+|+|||||||||++|..+... . ..-.+
T Consensus 49 ~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r~~~~~g~~ 127 (517)
T 4ad8_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (517)
T ss_dssp TTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCC
T ss_pred cceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEEEEecCCCc
Confidence 4678899999999 9999999999999999999655210 0 00135
Q ss_pred EEEECCEeCCC------CCceEEEEcCCCccCCCCCHHHHHHHHHHhcC-CCccchHHHHHHHHHHHcC-CchHhhhhhc
Q 004929 169 EVFVNGAKSEM------PYGSYGFVERETTLIGSLTVREYLYYSALLQL-PGFFCQRKNVVEDAIHAMS-LSDYANKLIG 240 (723)
Q Consensus 169 ~I~i~G~~~~~------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-~~~~~~~~~~v~~~l~~lg-L~~~~~~~ig 240 (723)
++.+||++... ....+..++|++.+....+....-.+-..... ............++++.+. +.......
T Consensus 128 ~~~ing~~v~~~~l~~~~~~li~i~~q~~~~~l~~~~~rr~~LD~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 205 (517)
T 4ad8_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASQRER-- 205 (517)
T ss_dssp EEESSSSBCCHHHHHHHHTTTEEEESGGGGGTTTSHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred EEEECCEECCHHHHHHHhhhheEEeCCchHHhcCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHhHHHH--
Confidence 67777765431 11236778888766544333222211100000 0000001111222222221 11111111
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 004929 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300 (723)
Q Consensus 241 ~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tv 300 (723)
...++-.+.|...|+.+ .|.+.....+.+.+++|.+.+..+
T Consensus 206 ----~~~l~~l~~ql~ei~~~---------------~l~~~E~e~L~~~~~~L~~~~~~~ 246 (517)
T 4ad8_A 206 ----ARQIDLLAFQVQEISEV---------------SPDPGEEEGLNTELSRLSNLHESS 246 (517)
T ss_dssp ----HHHHHHHHHHHHHHHHH---------------CCCSSCHHHHHHHHHHHHHHC---
T ss_pred ----HHHHHHHHHHHHHHHhc---------------CCCCCcHHHHHHHHHHHHHHHHHH
Confidence 12567778888888876 344455677788888887666554
No 198
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.60 E-value=7.5e-06 Score=87.29 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=34.4
Q ss_pred ccceeeceeeEEeCCc------EEEEECCCCCcHHHHHHHHHcCCCC
Q 004929 122 SDKVVKSSNGYALPGT------MTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge------~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
.++.|++++..+..++ ++||+||||||||||+++|++++..
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3457777777777666 9999999999999999999998763
No 199
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.58 E-value=3.9e-05 Score=75.79 Aligned_cols=29 Identities=28% Similarity=0.316 Sum_probs=26.1
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 132 ~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+++|++++|+|+||||||||++.|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34579999999999999999999999975
No 200
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.56 E-value=3.3e-05 Score=81.48 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHHh--hCCcEEEEeCCCCCCCHHH-HHHHHHHHHHHHHc-CC--EEEEEEeCChHHHHhcCCEE
Q 004929 248 LPCGERRRVRIARELV--MRPHVLFIDEPLYHLDSVS-ALLMMVTLKKLAST-GC--TLLFTINQSSTEVFGLFDRI 318 (723)
Q Consensus 248 LSGGerqRv~IA~aL~--~~P~lLlLDEPTsgLD~~~-~~~i~~~L~~l~~~-g~--tvi~t~h~~~~~i~~~~D~v 318 (723)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++. |. .+.++.|+. ..+..++|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHH
Confidence 898886 5666676 68999999 7899876 67788888888753 43 333333332 3444444443
No 201
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.55 E-value=0.00014 Score=76.43 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=25.6
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+.++..+.|.||+|+|||||+++|++..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 4678899999999999999999999865
No 202
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.54 E-value=2.8e-05 Score=91.03 Aligned_cols=43 Identities=26% Similarity=0.233 Sum_probs=31.6
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 004929 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~ 175 (723)
+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|.
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~ 46 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGT 46 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTC
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCc
Confidence 445689999999999999999999999765432 123766 4554
No 203
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.53 E-value=1.7e-05 Score=90.67 Aligned_cols=42 Identities=36% Similarity=0.433 Sum_probs=35.2
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEE-ECCEe
Q 004929 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG-EVF-VNGAK 176 (723)
Q Consensus 132 ~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G-~I~-i~G~~ 176 (723)
.+++|++++|+|+||||||||+++|+|++.+.+ | +|. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~---G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMG---GRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTC---SSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccC---CceEEEECCcH
Confidence 467899999999999999999999999987753 5 674 77743
No 204
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.53 E-value=0.0003 Score=78.21 Aligned_cols=170 Identities=17% Similarity=0.118 Sum_probs=95.6
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHH
Q 004929 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (723)
..-|+.+.+-+.+|+++.|.|++|+|||||+..++....... | ..+.|+.- .++..+.
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~---g-------------~~vl~~sl------E~~~~~l 244 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE---G-------------VGVGIYSL------EMPAAQL 244 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT---C-------------CCEEEEES------SSCHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC---C-------------CeEEEEEC------CCCHHHH
Confidence 345777777789999999999999999999988886432210 1 11223221 1233332
Q ss_pred HHH--HHHhcCCCc------cc-hHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHh--hCCcEEEE
Q 004929 203 LYY--SALLQLPGF------FC-QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV--MRPHVLFI 271 (723)
Q Consensus 203 l~~--~~~~~~~~~------~~-~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~--~~P~lLlL 271 (723)
..- +.....+.. .. ....++.+.++.+.-.+. .+. ...++|..+- .+.++.+. .+|+++++
T Consensus 245 ~~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l---~i~---d~~~~s~~~l--~~~~~~l~~~~~~~lIvI 316 (444)
T 2q6t_A 245 TLRMMCSEARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPI---YID---DTPDLTLMEV--RARARRLVSQNQVGLIII 316 (444)
T ss_dssp HHHHHHHHTTCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCE---EEE---CCTTCBHHHH--HHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHcCCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCE---EEE---CCCCCCHHHH--HHHHHHHHHHcCCCEEEE
Confidence 211 111111110 00 122334444433321111 111 1235777665 34556665 47999999
Q ss_pred eCCCCCCCH----------HHHHHHHHHHHHHHH-cCCEEEEEEeCCh------------------HHHHhcCCEEEEEe
Q 004929 272 DEPLYHLDS----------VSALLMMVTLKKLAS-TGCTLLFTINQSS------------------TEVFGLFDRICLLS 322 (723)
Q Consensus 272 DEPTsgLD~----------~~~~~i~~~L~~l~~-~g~tvi~t~h~~~------------------~~i~~~~D~v~vL~ 322 (723)
|..+.-.+. .....+.+.|+.+++ .+.+||+++|-.. ..+.+.+|.|+.|.
T Consensus 317 D~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 317 DYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp ECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred cChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 998764432 123567788888875 5889988766321 03566789999885
No 205
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.52 E-value=3.3e-05 Score=73.73 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=24.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
.|++++|+|+||||||||+++|++++.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999999999764
No 206
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.48 E-value=0.00011 Score=81.23 Aligned_cols=37 Identities=19% Similarity=0.103 Sum_probs=30.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G 174 (723)
++.+++++|++||||||++..|++.+...+ ++|.+-+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G---~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG---YKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEe
Confidence 588999999999999999999999876543 5665543
No 207
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.45 E-value=0.0015 Score=70.48 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=28.1
Q ss_pred eeecee--eEEeCCcEEEEECCCCCcHHHHHHHHHcC
Q 004929 125 VVKSSN--GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 125 iL~~vs--~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-|+.+- +-+++|+++.|.|++|+|||||...++..
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344443 35789999999999999999999888754
No 208
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.40 E-value=4e-05 Score=82.23 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=24.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
++..+.|.||+|+|||||++.+++...
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999998754
No 209
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.38 E-value=2.3e-05 Score=79.40 Aligned_cols=67 Identities=10% Similarity=0.052 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCE
Q 004929 249 PCGERRRVRIARELVMRPHVLFIDEPLY-HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (723)
Q Consensus 249 SGGerqRv~IA~aL~~~P~lLlLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (723)
+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+.....+-++++++.+.+.....++++.
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 456655553 33578899999999976 68877765555555554444467888877776665555543
No 210
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.35 E-value=0.00021 Score=70.08 Aligned_cols=25 Identities=36% Similarity=0.388 Sum_probs=22.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC
Q 004929 137 TMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
..+.|.||+|+|||||+++|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6799999999999999999998653
No 211
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.34 E-value=0.0002 Score=75.85 Aligned_cols=47 Identities=6% Similarity=0.129 Sum_probs=36.6
Q ss_pred hhCCcEEEEeCCCCC-CCHHHHHHHHHHHHHHHHcCCEEEEEEeCChH
Q 004929 263 VMRPHVLFIDEPLYH-LDSVSALLMMVTLKKLASTGCTLLFTINQSST 309 (723)
Q Consensus 263 ~~~P~lLlLDEPTsg-LD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~ 309 (723)
..+|++||+||+-.- .|...+..+...+..+.+.|..+|++++.+..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 143 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChH
Confidence 356999999998652 34478888999999888888888888876643
No 212
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.34 E-value=0.00072 Score=68.92 Aligned_cols=23 Identities=39% Similarity=0.729 Sum_probs=21.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCCC
Q 004929 139 TVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
+.|.||+|+|||||+++|++...
T Consensus 48 vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHcC
Confidence 88999999999999999998753
No 213
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.32 E-value=0.00012 Score=69.07 Aligned_cols=30 Identities=37% Similarity=0.413 Sum_probs=24.1
Q ss_pred ceeeEEeCCcEEEEECCCCCcHHHHHHHHHc
Q 004929 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 128 ~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
+.++.+.+| +++|+|||||||||++++|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 344455554 999999999999999999873
No 214
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.29 E-value=0.00021 Score=85.39 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=28.6
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 004929 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
+.+++|+.++|.||||+|||||+++|+|....
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 35789999999999999999999999998643
No 215
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.29 E-value=0.0001 Score=81.50 Aligned_cols=33 Identities=33% Similarity=0.297 Sum_probs=28.6
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC
Q 004929 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~ 163 (723)
+.+.+|++++|+|||||||||||++|+++..+.
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 345679999999999999999999999988664
No 216
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.24 E-value=3.2e-05 Score=83.15 Aligned_cols=50 Identities=22% Similarity=0.174 Sum_probs=41.9
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 004929 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~ 175 (723)
..+++++++.+.+|.+++|+|++|+|||||++.|+|.+.+.+ |+|.+-+.
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~---~~v~v~~~ 92 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREG---LKVAVIAV 92 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEE
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcC---CeEEEEee
Confidence 468889999999999999999999999999999999876543 66665444
No 217
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.20 E-value=7.9e-05 Score=71.77 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=30.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG--EVFVNGA 175 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G--~I~i~G~ 175 (723)
+|++++|+|++||||||+++.|++.+++. | .|.++|.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~----g~~~i~~d~~ 42 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCH----GIPCYTLDGD 42 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT----TCCEEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhC----CCcEEEECCh
Confidence 79999999999999999999999976542 4 5555553
No 218
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.16 E-value=0.00015 Score=73.28 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=27.1
Q ss_pred eeceeeEEe---CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 004929 126 VKSSNGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 126 L~~vs~~v~---~Ge~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
|.++++.+. +|.+++|.|++||||||+++.|+..+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 344444444 7999999999999999999999998765
No 219
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.12 E-value=0.0027 Score=63.97 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
.++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 4899999999999999999997654
No 220
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.11 E-value=0.0011 Score=73.69 Aligned_cols=36 Identities=11% Similarity=0.010 Sum_probs=29.9
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC
Q 004929 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.-|+.+.+-+.+|+++.|.|++|+|||||+--++..
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 456666666889999999999999999998777653
No 221
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.03 E-value=0.0019 Score=68.29 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=28.2
Q ss_pred eeecee-eEEeCCcEEEEECCCCCcHHHHHHHHHc
Q 004929 125 VVKSSN-GYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 125 iL~~vs-~~v~~Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
.|+.+- +-+++|+++.|.|++|+|||||+..++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344443 5688999999999999999999988875
No 222
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.01 E-value=9.7e-05 Score=80.00 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=45.2
Q ss_pred eEEEEeEEEEEecccccccceee--------------ceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVK--------------SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~--------------~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+.|+|++..|+. .+..|+ |+.+.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~----er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHAN----SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCC----SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCC----CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4678999988853 345788 899999999999999999999999999999864
No 223
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.00 E-value=0.00015 Score=78.08 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=32.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~ 176 (723)
++.+++|+|++|||||||+|.|+|.+.+.. |+|.+.+.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~---~~v~V~~~d 111 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERG---HKLSVLAVD 111 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEECC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcC---CeEEEEeec
Confidence 588999999999999999999999876553 777665543
No 224
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.97 E-value=0.00034 Score=69.65 Aligned_cols=25 Identities=40% Similarity=0.610 Sum_probs=23.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+.+++|+|||||||||++++|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999865
No 225
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.96 E-value=0.00087 Score=63.90 Aligned_cols=26 Identities=50% Similarity=0.718 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+|..++|+|++|+|||||++.|+|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999999964
No 226
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.95 E-value=0.00013 Score=83.24 Aligned_cols=47 Identities=23% Similarity=0.412 Sum_probs=39.3
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 004929 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G 174 (723)
.+++++++.+ +|+.++|+||||+|||||+++|++...+. .|+|.++|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 4677777777 89999999999999999999999987654 37776655
No 227
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.92 E-value=0.00032 Score=69.18 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=25.5
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 004929 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
.+|.+++|+||||||||||.+.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4799999999999999999999998764
No 228
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.87 E-value=0.0011 Score=66.82 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=43.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEe---------CChHHHHhcCCEEEEEe
Q 004929 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN---------QSSTEVFGLFDRICLLS 322 (723)
Q Consensus 265 ~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h---------~~~~~i~~~~D~v~vL~ 322 (723)
+|+++++||.-- |+. .+++.++.+++.|..||++-| .++..+..++|+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 654 356667777777999999998 67788899999999875
No 229
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.84 E-value=0.00018 Score=71.40 Aligned_cols=40 Identities=25% Similarity=0.275 Sum_probs=32.5
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 004929 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG--EVFVNGA 175 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G--~I~i~G~ 175 (723)
+.+|.+++|+|++||||||+.+.|++.+.+. .| .+.++|.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d 63 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGD 63 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECCh
Confidence 3479999999999999999999999987643 26 6777653
No 230
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.84 E-value=0.0018 Score=66.71 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=23.9
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++.-+.|.||+|+|||||+++|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 356779999999999999999999865
No 231
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.84 E-value=0.0014 Score=65.04 Aligned_cols=45 Identities=11% Similarity=0.074 Sum_probs=31.8
Q ss_pred hCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCE-EEEEEeCCh
Q 004929 264 MRPHVLFIDEPLYHL-DSVSALLMMVTLKKLASTGCT-LLFTINQSS 308 (723)
Q Consensus 264 ~~P~lLlLDEPTsgL-D~~~~~~i~~~L~~l~~~g~t-vi~t~h~~~ 308 (723)
.+|.+|++||.-.-- +...+..+.+.+..+.+.+.. +|++++.+.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 468999999965432 233477788888888777765 777776543
No 232
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.82 E-value=0.00062 Score=67.43 Aligned_cols=30 Identities=33% Similarity=0.328 Sum_probs=23.9
Q ss_pred ceeeEEeCCcEEEEECCCCCcHHHHHHHHHc
Q 004929 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 128 ~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
+.++.+.+ .+++|+|||||||||++++|.-
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHH
Confidence 34445555 4999999999999999998864
No 233
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.77 E-value=0.015 Score=62.88 Aligned_cols=27 Identities=41% Similarity=0.512 Sum_probs=24.4
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHc
Q 004929 132 YALPGTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 132 ~v~~Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
-+.+|+++.|.|++|+|||||+..++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 578999999999999999999977764
No 234
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.75 E-value=0.00064 Score=65.87 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=26.0
Q ss_pred ceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC
Q 004929 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 128 ~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45677778999999999999999999999975
No 235
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.75 E-value=0.00057 Score=66.23 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=29.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 004929 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~ 175 (723)
.+++|+|+||||||||++.|.+.++..+..-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 589999999999999999999876433222467766553
No 236
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.73 E-value=0.0029 Score=65.91 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=24.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCC
Q 004929 136 GTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
...+.|.||+|+|||||+++|++....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 468999999999999999999997654
No 237
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.71 E-value=0.0015 Score=63.28 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=21.0
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC
Q 004929 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4677888777776 6799999999999999999984
No 238
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.71 E-value=0.0055 Score=65.87 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=23.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+..-+.|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999999764
No 239
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.70 E-value=0.0016 Score=72.26 Aligned_cols=39 Identities=36% Similarity=0.525 Sum_probs=30.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC------C---CCceeEEEECCEe
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRLPH------S---ARMYGEVFVNGAK 176 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~~------~---~~~~G~I~i~G~~ 176 (723)
.++|+|+||+|||||+|.|+|.... + ....|.+.++|++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 7999999999999999999997531 0 0235889999875
No 240
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.68 E-value=0.0005 Score=66.50 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=26.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 004929 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
.+|.+++|+|++||||||+.+.|++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 37999999999999999999999998754
No 241
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.65 E-value=0.00075 Score=66.14 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 004929 138 MTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G 158 (723)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999999
No 242
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.60 E-value=0.00054 Score=75.61 Aligned_cols=45 Identities=16% Similarity=0.081 Sum_probs=38.0
Q ss_pred eceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 004929 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (723)
Q Consensus 127 ~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~ 176 (723)
+++++. +|++++++|+|||||||++..|++.+.+.+ |+|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g---~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKG---RRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEeecc
Confidence 567777 899999999999999999999999987654 788776654
No 243
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.57 E-value=0.013 Score=66.05 Aligned_cols=35 Identities=17% Similarity=0.054 Sum_probs=28.3
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHc
Q 004929 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
.-|+.+.+-+.+|+++.|.|++|+|||||+--++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 34555555588999999999999999999877664
No 244
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.57 E-value=0.00063 Score=66.49 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=31.1
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC
Q 004929 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
..+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 357888888887775 789999999999999999874
No 245
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.55 E-value=0.00059 Score=69.82 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=31.7
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 004929 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (723)
Q Consensus 132 ~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~ 175 (723)
...++.++.|+|+|||||||+.+.|+..+.. |.+.++|.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D 66 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGD 66 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecH
Confidence 4557899999999999999999999987642 45667764
No 246
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.54 E-value=0.00039 Score=74.69 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=33.8
Q ss_pred ceeeceeeEEeCCcE--EEEECCCCCcHHHHHHHHHcCC
Q 004929 124 KVVKSSNGYALPGTM--TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~--~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 578888888999998 9999999999999999999865
No 247
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.53 E-value=0.0081 Score=60.78 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+..-+.|.||+|+|||||+++|+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44568899999999999999999854
No 248
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.50 E-value=0.0016 Score=68.84 Aligned_cols=52 Identities=19% Similarity=0.040 Sum_probs=31.0
Q ss_pred hhCCcEEEEeCCC-CCCCHHHHHHHHH-HHHHHHHcCCEEEEEEeCChHHHHhc
Q 004929 263 VMRPHVLFIDEPL-YHLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVFGL 314 (723)
Q Consensus 263 ~~~P~lLlLDEPT-sgLD~~~~~~i~~-~L~~l~~~g~tvi~t~h~~~~~i~~~ 314 (723)
+.++++||+||.- ..++...+..++. +|.....+++.+|+|++.+..+....
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~ 265 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERK 265 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHTT
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHH
Confidence 4578999999983 2344444444544 55554445677888888887666544
No 249
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.47 E-value=0.0029 Score=67.65 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+..+.|.||+|+|||||++.++...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999765
No 250
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.42 E-value=0.0013 Score=64.47 Aligned_cols=25 Identities=40% Similarity=0.405 Sum_probs=22.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
..+++|+|++|||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999864
No 251
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.36 E-value=0.02 Score=60.62 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=23.9
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+..-+.|.||+|+|||||+++++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 356779999999999999999999865
No 252
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.36 E-value=0.0016 Score=62.56 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
+|.+++|+|++||||||+.+.|+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999864
No 253
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.33 E-value=0.00045 Score=72.72 Aligned_cols=44 Identities=18% Similarity=0.112 Sum_probs=35.5
Q ss_pred eeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 004929 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (723)
Q Consensus 129 vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~ 176 (723)
+++..+ |++++++|++|+||||++..|++.+.+.+ |+|.+.+.+
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g---~~v~l~~~D 135 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKG---FKVGLVGAD 135 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTT---CCEEEEECC
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEecC
Confidence 666655 99999999999999999999999876543 677765543
No 254
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.33 E-value=0.0021 Score=61.32 Aligned_cols=26 Identities=31% Similarity=0.599 Sum_probs=23.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC
Q 004929 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999998764
No 255
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.32 E-value=0.0019 Score=60.82 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
.++|+|++|+|||||++.|+|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999643
No 256
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.28 E-value=0.0018 Score=70.65 Aligned_cols=45 Identities=20% Similarity=0.122 Sum_probs=31.7
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CC---CCceeEEEECCE
Q 004929 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-----HS---ARMYGEVFVNGA 175 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~-----~~---~~~~G~I~i~G~ 175 (723)
+.+..|..++|+|+||+|||||+++|+|... |. ....|.+.+.|.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3455788999999999999999999999721 00 112477777663
No 257
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.27 E-value=0.002 Score=60.71 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
No 258
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.21 E-value=0.00069 Score=72.24 Aligned_cols=40 Identities=20% Similarity=0.449 Sum_probs=34.6
Q ss_pred cceeeceeeEEeCCcE--EEEECCCCCcHHHHHHHHHcCCCC
Q 004929 123 DKVVKSSNGYALPGTM--TVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~--~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
..+++.++..++.|++ +.+.||+|+|||||++++++.+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3577778888888988 999999999999999999997644
No 259
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.20 E-value=0.0036 Score=67.72 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=25.7
Q ss_pred eeceeeEEeCCcEEEEECCCCCcHHHHHHHHH
Q 004929 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA 157 (723)
Q Consensus 126 L~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~ 157 (723)
+++..+.+.+| +++|.|+|||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 35556666664 99999999999999999986
No 260
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.16 E-value=0.0026 Score=64.14 Aligned_cols=27 Identities=41% Similarity=0.530 Sum_probs=24.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+|.+++|+|++||||||+.+.|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999999843
No 261
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.05 E-value=0.0033 Score=60.32 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998754
No 262
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.03 E-value=0.0031 Score=63.96 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999654
No 263
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.02 E-value=0.0029 Score=60.71 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999964
No 264
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.02 E-value=0.025 Score=59.81 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=21.4
Q ss_pred eEEeCCcEEEEECCCCCcHHHHH-HHHHc
Q 004929 131 GYALPGTMTVIMGPAKSGKSTLL-RAIAG 158 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL-~~L~G 158 (723)
+=+.+| ++.|.||+|+|||||+ .+++.
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 446689 9999999999999994 44443
No 265
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.99 E-value=0.0034 Score=59.89 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 266
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.95 E-value=0.0033 Score=64.31 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 004929 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+++|+||||||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999864
No 267
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.90 E-value=0.0038 Score=60.07 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999998643
No 268
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.89 E-value=0.0038 Score=65.17 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=28.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G 174 (723)
.|.++.|.||||||||||.+.|+...+. |.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~-----~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQG-----NVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTT-----CCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEec
Confidence 5789999999999999999999876532 4566665
No 269
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.87 E-value=0.0044 Score=59.46 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998654
No 270
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.86 E-value=0.0041 Score=58.34 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 004929 138 MTVIMGPAKSGKSTLLRAI 156 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L 156 (723)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 271
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.82 E-value=0.064 Score=68.22 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=28.4
Q ss_pred eeecee--eEEeCCcEEEEECCCCCcHHHHHHHHHcC
Q 004929 125 VVKSSN--GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 125 iL~~vs--~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-|+.+- +=+.+|+++.|.||+|+|||||+-.++..
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 455554 35889999999999999999998777653
No 272
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.82 E-value=0.0029 Score=68.30 Aligned_cols=47 Identities=21% Similarity=0.160 Sum_probs=33.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 004929 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
.+.++|++..+ .++.+++++++.| +|+|++|+|||||++.|.|....
T Consensus 17 ~v~~~~l~~~~-----~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~ 63 (361)
T 2qag_A 17 YVGFANLPNQV-----HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY 63 (361)
T ss_dssp ----CCHHHHH-----HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-
T ss_pred eEEeccchHHh-----CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCC
Confidence 36677776544 2456788888876 99999999999999999887543
No 273
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.80 E-value=0.0026 Score=64.10 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=46.1
Q ss_pred HHHhhCCcEEEEeCCCCC-CCHHHHHHHHHHHHHHHHcCCEEEEEEeCC-h--------------------HHHHhcCCE
Q 004929 260 RELVMRPHVLFIDEPLYH-LDSVSALLMMVTLKKLASTGCTLLFTINQS-S--------------------TEVFGLFDR 317 (723)
Q Consensus 260 ~aL~~~P~lLlLDEPTsg-LD~~~~~~i~~~L~~l~~~g~tvi~t~h~~-~--------------------~~i~~~~D~ 317 (723)
.+|..+|+++++||+-.- .+........+.+..+...|..++.|+|-- . +.+++.||.
T Consensus 79 ~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~ 158 (228)
T 2r8r_A 79 ALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFD 158 (228)
T ss_dssp HHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSE
T ss_pred HHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCe
Confidence 334568999999997642 343222333444444556788888888711 1 235566777
Q ss_pred EEEEeCCeEEEEeChhHHHHHhhh
Q 004929 318 ICLLSNGNTLFFGETLACLQHFSN 341 (723)
Q Consensus 318 v~vL~~G~iv~~G~~~~~~~~f~~ 341 (723)
|.+++ -+|+++.+.+.+
T Consensus 159 v~lvD-------~~p~~l~~rl~~ 175 (228)
T 2r8r_A 159 LVLID-------LPPRELLERLRD 175 (228)
T ss_dssp EEEBC-------CCHHHHHHHHHT
T ss_pred EEEec-------CCHHHHHHHHHC
Confidence 76653 467777776654
No 274
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.78 E-value=0.0038 Score=61.06 Aligned_cols=24 Identities=46% Similarity=0.729 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
.+.|+||||||||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 478999999999999999987654
No 275
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.78 E-value=0.0054 Score=59.67 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 276
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.76 E-value=0.005 Score=60.93 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=21.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q 004929 136 GTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
+-+++|.|++||||||+++.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999997
No 277
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.74 E-value=0.0046 Score=59.15 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.+..+.|.|++||||||+.+.|+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 5778999999999999999999854
No 278
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.73 E-value=0.005 Score=59.67 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999864
No 279
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.69 E-value=0.0059 Score=59.59 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 477899999999999999999998654
No 280
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.63 E-value=0.006 Score=57.88 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q 004929 137 TMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G 158 (723)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 281
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.60 E-value=0.0058 Score=58.25 Aligned_cols=23 Identities=52% Similarity=0.573 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999754
No 282
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.59 E-value=0.11 Score=65.98 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=26.5
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 132 ~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-+.+|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 58999999999999999999999998754
No 283
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.57 E-value=0.0063 Score=59.58 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+|.+++|.|++||||||+.+.|+..+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998653
No 284
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.56 E-value=0.015 Score=65.25 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=23.9
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+.+..-+.|.||+|+|||+|+++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3456679999999999999999998754
No 285
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.56 E-value=0.038 Score=59.24 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=23.0
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+..-+.|.||+|+|||||+++|+...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 345568899999999999999999854
No 286
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.56 E-value=0.0064 Score=58.98 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q 004929 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 458999999999999999999975
No 287
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.55 E-value=0.0063 Score=58.70 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++.+++|+|++||||||+.+.|+..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 57799999999999999999998643
No 288
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.52 E-value=0.0049 Score=59.34 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=22.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCC
Q 004929 137 TMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
.+++|+|++|||||||++.|++.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37999999999999999999987543
No 289
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.51 E-value=0.0031 Score=61.90 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 290
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.43 E-value=0.0075 Score=59.08 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998654
No 291
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.42 E-value=0.0082 Score=57.62 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q 004929 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
+.+++|.|++||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999864
No 292
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.39 E-value=0.0074 Score=57.84 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
++.|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987653
No 293
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.23 E-value=0.074 Score=58.71 Aligned_cols=28 Identities=29% Similarity=0.542 Sum_probs=23.7
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+.|-.=+.|.||+|+|||+|.++||+..
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3455568899999999999999999864
No 294
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.22 E-value=0.0079 Score=61.89 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 295
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.20 E-value=0.11 Score=66.97 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=28.5
Q ss_pred eeecee--eEEeCCcEEEEECCCCCcHHHHHHHHHcC
Q 004929 125 VVKSSN--GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 125 iL~~vs--~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-|+.+- +=+.+|+++.|.||+|+|||||+..++..
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~ 406 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 455544 35889999999999999999998877754
No 296
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.19 E-value=0.076 Score=58.50 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=23.0
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+..=+.+.||+|+|||+|.++||+..
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344558999999999999999999864
No 297
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.15 E-value=0.011 Score=58.47 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+|-.+.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 57789999999999999999998753
No 298
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.13 E-value=0.0099 Score=57.85 Aligned_cols=23 Identities=43% Similarity=0.699 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999854
No 299
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.11 E-value=0.01 Score=57.25 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 357799999999999999999998753
No 300
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.09 E-value=0.011 Score=56.97 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 301
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.06 E-value=0.023 Score=54.43 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3889999999999999766654
No 302
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.06 E-value=0.029 Score=54.90 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=42.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEe---------CChHHHHhcCCEEEEEe
Q 004929 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN---------QSSTEVFGLFDRICLLS 322 (723)
Q Consensus 265 ~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h---------~~~~~i~~~~D~v~vL~ 322 (723)
+.+++++||.-- +|+. +++.++.+++.|..||++-+ .++.++.+++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999544 6643 36678888878999999888 67788999999998774
No 303
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.04 E-value=0.079 Score=58.20 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=23.1
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++-.=+.|.||+|+|||+|.++||+..
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHh
Confidence 344559999999999999999999864
No 304
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.04 E-value=0.0085 Score=57.15 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=18.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
No 305
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.03 E-value=0.12 Score=55.88 Aligned_cols=26 Identities=31% Similarity=0.597 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++.-+.|.||+|+|||+|+++|+...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 56789999999999999999998764
No 306
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.02 E-value=0.016 Score=61.11 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=29.8
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC
Q 004929 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
..+|+....+ .|.-++|+|+||+|||||...|.++
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 4667766655 7899999999999999999999885
No 307
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.01 E-value=0.0075 Score=65.53 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=37.3
Q ss_pred CCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCEEEEEEeCChH
Q 004929 265 RPHVLFIDEPLYHLD---SVSALLMMVTLKKLASTGCTLLFTINQSST 309 (723)
Q Consensus 265 ~P~lLlLDEPTsgLD---~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~ 309 (723)
.|.++++||.=.=++ +..+..+.+.+++.++.|..+++++|.|.+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 578999999988884 677888888888888889888888887753
No 308
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.011 Score=56.69 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.|.+..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
No 309
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.98 E-value=0.011 Score=54.73 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999854
No 310
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.93 E-value=0.013 Score=54.83 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 48999999999999999999864
No 311
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.93 E-value=0.087 Score=57.45 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+-.=+.+.||+|+|||+|.+++|+..
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 33348899999999999999999864
No 312
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.92 E-value=0.066 Score=53.34 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=43.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEe---------CChHHHHhcCCEEEEEe
Q 004929 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN---------QSSTEVFGLFDRICLLS 322 (723)
Q Consensus 265 ~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h---------~~~~~i~~~~D~v~vL~ 322 (723)
+.+++++||.-- +|.. +++.|+.+++.|+.||++-+ .++..+..+||.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999876 6643 33777887878999999999 78889999999999875
No 313
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.92 E-value=0.013 Score=54.42 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999999853
No 314
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.91 E-value=0.013 Score=58.44 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++.+++|.|++||||||+.+.|+..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998643
No 315
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.90 E-value=0.014 Score=54.99 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
=++++|.|+.||||||+.+.|+..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998743
No 316
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.89 E-value=0.015 Score=56.57 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+-+++|+|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999998643
No 317
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.88 E-value=0.013 Score=57.55 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
No 318
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.88 E-value=0.011 Score=54.96 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37999999999999999998864
No 319
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.87 E-value=0.019 Score=59.44 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 320
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.86 E-value=0.013 Score=54.05 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 321
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.83 E-value=0.013 Score=54.08 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999754
No 322
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.83 E-value=0.014 Score=55.88 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 323
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.82 E-value=0.013 Score=53.88 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 324
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.82 E-value=0.012 Score=54.11 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998864
No 325
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.80 E-value=0.013 Score=55.33 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 004929 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998753
No 326
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.78 E-value=0.015 Score=54.19 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004929 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998754
No 327
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.75 E-value=0.022 Score=61.36 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q 004929 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
|-.++|+|.+|+|||||++.|+|.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999994
No 328
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.74 E-value=0.013 Score=56.14 Aligned_cols=24 Identities=42% Similarity=0.519 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 004929 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998753
No 329
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.74 E-value=0.014 Score=54.11 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999875
No 330
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.73 E-value=0.015 Score=54.17 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999763
No 331
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.73 E-value=0.014 Score=54.88 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999864
No 332
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.73 E-value=0.017 Score=56.29 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=21.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998643
No 333
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.71 E-value=0.017 Score=54.27 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998743
No 334
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.70 E-value=0.015 Score=53.95 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999998764
No 335
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.69 E-value=0.016 Score=57.07 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999997643
No 336
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.67 E-value=0.015 Score=53.80 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998753
No 337
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.66 E-value=0.015 Score=54.49 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999999754
No 338
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.65 E-value=0.015 Score=54.55 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998854
No 339
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.65 E-value=0.014 Score=54.20 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37999999999999999999864
No 340
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.65 E-value=0.014 Score=57.94 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998653
No 341
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.64 E-value=0.017 Score=55.32 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q 004929 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
+.+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
No 342
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.62 E-value=0.016 Score=58.90 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
.++|+|.+|+|||||++.|.|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 489999999999999999999653
No 343
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.60 E-value=0.014 Score=55.80 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 344
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.57 E-value=0.015 Score=55.73 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
No 345
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.56 E-value=0.022 Score=53.50 Aligned_cols=26 Identities=38% Similarity=0.475 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+.-.++|+|++|+|||||++.+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34578999999999999999999853
No 346
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.55 E-value=0.015 Score=54.53 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999863
No 347
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.55 E-value=0.1 Score=52.53 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=44.9
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeC---------ChHHHHhcCCEEEEEe
Q 004929 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ---------SSTEVFGLFDRICLLS 322 (723)
Q Consensus 264 ~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~---------~~~~i~~~~D~v~vL~ 322 (723)
.+.+++++||.---.| +.++++.+++.|+.||++-+. ++..+..+||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999987754 666677777789999999999 8889999999999874
No 348
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.53 E-value=0.02 Score=58.59 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998753
No 349
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.49 E-value=0.016 Score=55.27 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999864
No 350
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.47 E-value=0.021 Score=57.82 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++-.++|.||+||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999854
No 351
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.47 E-value=0.25 Score=54.48 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=24.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
++.+++++|++|+||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999976543
No 352
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.46 E-value=0.019 Score=58.30 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 004929 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
No 353
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.46 E-value=0.018 Score=53.32 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999974
No 354
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.46 E-value=0.018 Score=54.99 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999864
No 355
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.46 E-value=0.027 Score=55.52 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.|..++|+||+|+|||||...|+.+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999999998753
No 356
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.44 E-value=0.018 Score=54.49 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 38999999999999999999854
No 357
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.43 E-value=0.02 Score=56.01 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q 004929 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
..+++|.|++||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999864
No 358
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.41 E-value=0.021 Score=53.66 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 48999999999999999999753
No 359
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.41 E-value=0.031 Score=59.54 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++.++.|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 46789999999999999999999865
No 360
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.40 E-value=0.017 Score=54.86 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004929 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 7899999999999999999864
No 361
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.39 E-value=0.019 Score=53.39 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 362
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.36 E-value=0.019 Score=54.47 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999753
No 363
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.36 E-value=0.019 Score=54.96 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999999854
No 364
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.34 E-value=0.021 Score=54.48 Aligned_cols=25 Identities=40% Similarity=0.586 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
-++|+|++|+|||||++.|.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 4899999999999999999997643
No 365
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.33 E-value=0.02 Score=52.94 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004929 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999864
No 366
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.23 E-value=0.021 Score=53.63 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998854
No 367
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.21 E-value=0.02 Score=53.64 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 368
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.21 E-value=0.022 Score=53.78 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999999754
No 369
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.19 E-value=0.022 Score=53.30 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999999864
No 370
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.17 E-value=0.024 Score=59.52 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|.+|+|||||++.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 59999999999999999999863
No 371
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.16 E-value=0.014 Score=55.16 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q 004929 136 GTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44699999999999999999875
No 372
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.15 E-value=0.023 Score=54.24 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++++|++|+|||||++.|++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48899999999999999999864
No 373
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.13 E-value=0.019 Score=59.08 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||+|.|.|..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998754
No 374
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.12 E-value=0.024 Score=53.39 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999864
No 375
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.04 E-value=0.027 Score=56.04 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998643
No 376
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.03 E-value=0.024 Score=58.75 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q 004929 136 GTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
..+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999984
No 377
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.00 E-value=0.032 Score=52.59 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+..+.|.||+|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998764
No 378
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.00 E-value=0.025 Score=55.43 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 379
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.99 E-value=0.025 Score=54.53 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998754
No 380
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.99 E-value=0.023 Score=58.07 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|.+|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999973
No 381
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.98 E-value=0.014 Score=60.96 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=19.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++-+++|.|++||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35589999999999999999998743
No 382
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.98 E-value=0.027 Score=55.72 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+|-.+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999998654
No 383
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.98 E-value=0.023 Score=53.77 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 384
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.97 E-value=0.027 Score=59.16 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999964
No 385
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.97 E-value=0.026 Score=54.55 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999864
No 386
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.94 E-value=0.026 Score=53.90 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999999864
No 387
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.91 E-value=0.027 Score=53.51 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=21.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.=.++|+|++|+|||||++.+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999999754
No 388
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.91 E-value=0.027 Score=53.85 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999999854
No 389
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.89 E-value=0.022 Score=55.28 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999764
No 390
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.88 E-value=0.025 Score=54.17 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 58999999999999999999843
No 391
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.86 E-value=0.026 Score=57.26 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 392
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.86 E-value=0.025 Score=61.12 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004929 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++|+|++|+|||||++.|+|..
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999863
No 393
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.85 E-value=0.028 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999999753
No 394
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.82 E-value=0.029 Score=52.95 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 395
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.81 E-value=0.026 Score=54.18 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999999864
No 396
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.80 E-value=0.026 Score=53.70 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999853
No 397
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.77 E-value=0.031 Score=53.94 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999864
No 398
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.74 E-value=0.03 Score=53.42 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998753
No 399
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.72 E-value=0.033 Score=57.81 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q 004929 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++.|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999863
No 400
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.72 E-value=0.031 Score=55.08 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998643
No 401
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.69 E-value=0.029 Score=53.93 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004929 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++|+|++|+|||||++.|.+..
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998753
No 402
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.69 E-value=0.038 Score=55.28 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+..+.|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998653
No 403
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.68 E-value=0.03 Score=54.95 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 004929 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998753
No 404
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.68 E-value=0.38 Score=62.12 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=31.5
Q ss_pred cceeecee--eEEeCCcEEEEECCCCCcHHHHHHHHHc
Q 004929 123 DKVVKSSN--GYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 123 ~~iL~~vs--~~v~~Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
...|+++. +-+++|+.+.|.||+|+|||||...+.-
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ 1103 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 1103 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45678888 5899999999999999999999998763
No 405
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.67 E-value=0.032 Score=57.05 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999854
No 406
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.66 E-value=0.017 Score=56.69 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999874
No 407
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.65 E-value=0.029 Score=54.35 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 48999999999999999999864
No 408
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.65 E-value=0.038 Score=55.25 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
...++.|+||+||||+|..+.|+-.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998643
No 409
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.63 E-value=0.039 Score=54.92 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=25.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
+|.+++|.|++||||||+++.|+..+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999876643
No 410
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.63 E-value=0.032 Score=53.90 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999973
No 411
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.62 E-value=0.033 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 412
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.60 E-value=0.033 Score=53.36 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004929 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++|+|++|+|||||++.+.+..
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999854
No 413
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.60 E-value=0.03 Score=52.81 Aligned_cols=22 Identities=27% Similarity=0.301 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999854
No 414
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.59 E-value=0.012 Score=57.67 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 004929 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
..+.|.||+|+|||||++.++...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999999998754
No 415
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.58 E-value=0.031 Score=57.64 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|.+|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 416
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.57 E-value=0.03 Score=53.61 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 38999999999999999999854
No 417
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.54 E-value=0.033 Score=54.00 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 38999999999999999998753
No 418
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.54 E-value=0.031 Score=58.33 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|+.|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999974
No 419
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.54 E-value=0.033 Score=53.04 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q 004929 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
=.++|+|++|+|||||++.+.+.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999964
No 420
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.53 E-value=0.034 Score=53.17 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999999753
No 421
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.52 E-value=0.034 Score=52.92 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999999864
No 422
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.51 E-value=0.033 Score=53.29 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998854
No 423
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.51 E-value=0.035 Score=53.40 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999853
No 424
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.51 E-value=0.034 Score=55.19 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++|+|++|+|||||++.|.|.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 425
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.51 E-value=0.054 Score=52.21 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.|.-++|.|+||+|||||...|..+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 5889999999999999999988763
No 426
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.50 E-value=0.026 Score=53.96 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998864
No 427
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.50 E-value=0.037 Score=60.77 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=23.1
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcC
Q 004929 134 LPGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
...+++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999999999999999864
No 428
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.49 E-value=0.031 Score=54.12 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999854
No 429
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.49 E-value=0.037 Score=59.11 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=21.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 004929 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+++|+||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 379999999999999999999865
No 430
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.47 E-value=0.035 Score=53.21 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999864
No 431
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.47 E-value=0.035 Score=53.87 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999754
No 432
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.45 E-value=0.036 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999999864
No 433
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.43 E-value=0.039 Score=53.90 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999999854
No 434
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.42 E-value=0.032 Score=56.14 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=21.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999987653
No 435
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.41 E-value=0.031 Score=53.02 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999975
No 436
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.40 E-value=0.033 Score=54.38 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 38999999999999999988753
No 437
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.36 E-value=0.04 Score=53.12 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
-++|+|++|+|||||++.+.|...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 489999999999999999998654
No 438
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.33 E-value=0.042 Score=55.61 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=24.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
+|.+++|.|++||||||+++.|+..+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5889999999999999999999886643
No 439
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.33 E-value=0.049 Score=57.50 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+.+++|+||+|||||||...|+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999999765
No 440
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.30 E-value=0.032 Score=54.91 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999999854
No 441
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.28 E-value=0.039 Score=51.97 Aligned_cols=27 Identities=15% Similarity=0.396 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
.+..+.|.||+|+|||||++.++....
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999987653
No 442
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.28 E-value=0.031 Score=52.54 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 443
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.27 E-value=0.036 Score=53.92 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999854
No 444
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.25 E-value=0.043 Score=52.83 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 445
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.22 E-value=0.038 Score=58.60 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=22.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 004929 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999999865
No 446
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.20 E-value=0.042 Score=52.60 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 48999999999999999988753
No 447
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.15 E-value=0.037 Score=57.15 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999974
No 448
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.13 E-value=0.042 Score=53.89 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999974
No 449
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.10 E-value=0.043 Score=53.49 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 450
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.09 E-value=0.04 Score=53.95 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999864
No 451
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.09 E-value=0.086 Score=63.26 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC
Q 004929 137 TMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
..+.|.||+|+|||+|.+.|+....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999998764
No 452
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.04 E-value=0.053 Score=60.29 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=28.2
Q ss_pred eeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 125 iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+++.+ ..+-+|+.++|+|+||+|||||++.|++..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 44444 344579999999999999999999998754
No 453
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.03 E-value=0.03 Score=52.97 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=9.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998653
No 454
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.98 E-value=0.053 Score=53.96 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
+|.++.+.|++||||||+++.|+..+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4889999999999999999999886643
No 455
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.97 E-value=0.052 Score=53.70 Aligned_cols=22 Identities=32% Similarity=0.598 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++.|+||+||||+|..+.|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999864
No 456
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.95 E-value=0.045 Score=55.88 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999864
No 457
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.95 E-value=0.043 Score=53.14 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38899999999999999999854
No 458
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.94 E-value=0.041 Score=52.99 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q 004929 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
=-++|+|++|+|||||++.+.+.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999999764
No 459
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.94 E-value=0.053 Score=54.47 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC
Q 004929 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
|.+++|-|+.||||||+.+.|+..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999998663
No 460
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.94 E-value=0.054 Score=54.08 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=25.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
+|.++.+.|++||||||+.+.|+..+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 6899999999999999999999987653
No 461
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.89 E-value=0.06 Score=54.03 Aligned_cols=27 Identities=26% Similarity=0.243 Sum_probs=24.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 588999999999999999999987654
No 462
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.78 E-value=0.038 Score=56.41 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++.+++|.|+.||||||+.+.|+..+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999999998765
No 463
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.78 E-value=0.07 Score=53.11 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=39.8
Q ss_pred hhCCcEEEEeCCCC----CCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChH---------HHHhcCCEEEEEe
Q 004929 263 VMRPHVLFIDEPLY----HLDSVSALLMMVTLKKLA-STGCTLLFTINQSST---------EVFGLFDRICLLS 322 (723)
Q Consensus 263 ~~~P~lLlLDEPTs----gLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~---------~i~~~~D~v~vL~ 322 (723)
-.+|+++++|--+. .-|.....+++..|+.++ +.|.+++++.|.... .+...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 35889999996432 114455667777788877 458999998765422 1345789888874
No 464
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.78 E-value=0.048 Score=55.87 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++++|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 465
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.74 E-value=0.049 Score=52.11 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999753
No 466
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.68 E-value=0.024 Score=59.83 Aligned_cols=42 Identities=10% Similarity=0.126 Sum_probs=30.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 004929 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (723)
Q Consensus 265 ~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (723)
+++++++|| ...|+...+..+.+.+.+... ...+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 788999888888888776543 334555566654
No 467
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.63 E-value=0.06 Score=53.30 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++|+|.+|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999974
No 468
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.51 E-value=0.028 Score=55.00 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998653
No 469
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.50 E-value=0.057 Score=53.15 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 004929 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-.++|+|.+|+|||||++.+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998753
No 470
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=92.43 E-value=0.07 Score=54.78 Aligned_cols=25 Identities=28% Similarity=0.581 Sum_probs=22.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC
Q 004929 137 TMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
-.++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4799999999999999999999754
No 471
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=92.41 E-value=0.062 Score=52.98 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999864
No 472
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.35 E-value=0.058 Score=52.29 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 38999999999999999998754
No 473
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.34 E-value=0.076 Score=55.89 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
..+++|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4589999999999999999999764
No 474
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.28 E-value=0.03 Score=53.97 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=4.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 475
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.27 E-value=0.042 Score=52.36 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q 004929 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
=-++|+|++|+|||||++.+.+.
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999653
No 476
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.20 E-value=0.025 Score=57.56 Aligned_cols=22 Identities=36% Similarity=0.762 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004929 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+.|.||+|+|||||+++|++..
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7899999999999999999854
No 477
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.19 E-value=0.059 Score=59.81 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++|+|.+|+|||||++.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6999999999999999999884
No 478
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.09 E-value=0.064 Score=52.13 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++|+|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 479
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.04 E-value=0.075 Score=57.94 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
..+++|+||+|||||||.+.|+...
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3478999999999999999998754
No 480
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.02 E-value=0.031 Score=66.62 Aligned_cols=33 Identities=27% Similarity=0.321 Sum_probs=28.9
Q ss_pred eeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 004929 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 129 vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
.++.+.+|+.+.|.||+|+|||||+++|++...
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 355677899999999999999999999999763
No 481
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.99 E-value=0.073 Score=52.27 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 482
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.92 E-value=0.069 Score=51.89 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 483
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.81 E-value=0.084 Score=48.65 Aligned_cols=44 Identities=16% Similarity=0.118 Sum_probs=30.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHH
Q 004929 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310 (723)
Q Consensus 265 ~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~ 310 (723)
+..+|++||.- .|++..+..+.+.|... ..+..+|++++.+..+
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~~ 119 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLVE 119 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHHH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHHH
Confidence 34689999984 68888888888887322 2345677777776543
No 484
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.43 E-value=0.097 Score=52.73 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-+||+|++||||||+.+.|+..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998643
No 485
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.30 E-value=0.11 Score=53.89 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++..+.|.||+|+|||||++.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 56679999999999999999998765
No 486
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.29 E-value=0.11 Score=50.18 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=38.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeC---------ChHHHHhcCCEEEEEe
Q 004929 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ---------SSTEVFGLFDRICLLS 322 (723)
Q Consensus 265 ~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~---------~~~~i~~~~D~v~vL~ 322 (723)
+++++++||.-- +|+ .+++.|+.++++|..|+++-+. +...+..++|.|.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999754 543 3667778888779999998872 3345666788886654
No 487
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.22 E-value=0.12 Score=54.72 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=25.8
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHcC
Q 004929 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
+-+.+|.++.|.||+|+|||||...++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 56778999999999999999999998853
No 488
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.10 E-value=0.11 Score=50.08 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+.|.||+|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998754
No 489
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.84 E-value=0.33 Score=54.24 Aligned_cols=71 Identities=21% Similarity=0.220 Sum_probs=51.3
Q ss_pred CCCCCHHHHHHHH--HHHHHhh---------------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCC
Q 004929 245 MKGLPCGERRRVR--IARELVM---------------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307 (723)
Q Consensus 245 ~~~LSGGerqRv~--IA~aL~~---------------~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~ 307 (723)
..++||||+|-.- |+.+++. .=+++++||+ +-+|...+...++++++| |.-+|+++ |
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiat--P 450 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAA--P 450 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEE--S
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEEC--c
Confidence 4579999999643 3334333 1257999999 999999999999999976 54455543 3
Q ss_pred hHHHHhcCCEEEEEe
Q 004929 308 STEVFGLFDRICLLS 322 (723)
Q Consensus 308 ~~~i~~~~D~v~vL~ 322 (723)
. .+....|.++.+-
T Consensus 451 ~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 451 E-NISPERGTTYKLV 464 (483)
T ss_dssp S-SCCCSSSEEEECC
T ss_pred c-hhhhccCceEEEE
Confidence 3 5566788888764
No 490
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.73 E-value=0.12 Score=55.35 Aligned_cols=26 Identities=31% Similarity=0.309 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
..-.++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998765
No 491
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=90.71 E-value=0.13 Score=53.30 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+-.++++|.+|+|||||+|.|.|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3468999999999999999999975
No 492
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=90.67 E-value=0.21 Score=52.49 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=25.0
Q ss_pred eeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHc
Q 004929 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 125 iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
.+|+ ++..-.|.-+.|.|+||+|||||.-.|..
T Consensus 137 ~~H~-~~v~~~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 137 QIHG-VLLEVFGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp EEEE-EEEEETTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eeEE-EEEEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4444 23333588899999999999999988765
No 493
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.55 E-value=0.13 Score=52.48 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
+...+.|.||+|+|||||++.|+..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4557889999999999999999975
No 494
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=89.98 E-value=0.049 Score=52.72 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-++|+|++|+|||||++.+.+-
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 4899999999999999988753
No 495
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=90.50 E-value=0.12 Score=56.46 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004929 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++|+|.+++|||||++.|+|..
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999864
No 496
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.47 E-value=0.13 Score=53.54 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+...+.|.||+|+|||+|.++|+..+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567888999999999999999754
No 497
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.43 E-value=0.14 Score=53.76 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004929 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+..-+.|.||+|+|||+|+++|+...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 55679999999999999999999753
No 498
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=90.42 E-value=0.085 Score=56.42 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|.+|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999964
No 499
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.41 E-value=0.13 Score=57.92 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=25.1
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 004929 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
+.|-.+.|+|.+||||||+.+.|+..+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 3577899999999999999999998765
No 500
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.40 E-value=0.12 Score=57.04 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004929 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++|+|++|+|||||++.|+|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
Done!