Citrus Sinensis ID: 004932
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 723 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZUU9 | 730 | ABC transporter G family | yes | no | 0.994 | 0.984 | 0.810 | 0.0 | |
| Q8RXN0 | 703 | ABC transporter G family | no | no | 0.799 | 0.822 | 0.382 | 1e-114 | |
| Q8RWI9 | 691 | ABC transporter G family | no | no | 0.835 | 0.874 | 0.361 | 1e-111 | |
| Q9C8K2 | 687 | ABC transporter G family | no | no | 0.847 | 0.892 | 0.353 | 1e-107 | |
| Q9C8J8 | 678 | ABC transporter G family | no | no | 0.846 | 0.902 | 0.343 | 3e-98 | |
| Q9H222 | 651 | ATP-binding cassette sub- | yes | no | 0.709 | 0.788 | 0.288 | 5e-50 | |
| P45843 | 666 | Protein scarlet OS=Drosop | yes | no | 0.847 | 0.920 | 0.261 | 6e-50 | |
| Q80W57 | 657 | ATP-binding cassette sub- | yes | no | 0.834 | 0.917 | 0.264 | 4e-49 | |
| Q4GZT4 | 655 | ATP-binding cassette sub- | no | no | 0.731 | 0.807 | 0.266 | 1e-48 | |
| Q8MIB3 | 656 | ATP-binding cassette sub- | yes | no | 0.773 | 0.852 | 0.274 | 6e-48 |
| >sp|Q9ZUU9|AB3G_ARATH ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 1194 bits (3090), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 591/729 (81%), Positives = 651/729 (89%), Gaps = 10/729 (1%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDT-DVEVR 59
MEEIQSQSD YRSSSSSASSP SRVPSS+FFY+RKPGSLRQPISFEDSPEWEDT DV++R
Sbjct: 1 MEEIQSQSDLYRSSSSSASSPTSRVPSSHFFYVRKPGSLRQPISFEDSPEWEDTPDVDLR 60
Query: 60 VEE---GGDSIN-AATTPASPSLSKLNSGSLPSPPLPEGAA---VARKIAGASVVWKDLT 112
+E+ GGDSIN A TTP SPSLSK+NSGS+ SPP+PEG A V RKIAGAS+ WKDLT
Sbjct: 61 MEDEAGGGDSINDATTTPVSPSLSKMNSGSMASPPVPEGGAGTGVVRKIAGASIAWKDLT 120
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172
VT+KGKR+YSDKVVKSSNGYA PGTMTVIMGPAKSGKSTLLRA+AGRLP SA+MYGEVFV
Sbjct: 121 VTMKGKRKYSDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRLPPSAKMYGEVFV 180
Query: 173 NGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS 232
NG+KS MPYGSYGFVERET LIGSLTVRE+LYYSALLQLPGF Q+++VVEDAI AMSLS
Sbjct: 181 NGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFLFQKRSVVEDAIQAMSLS 240
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
DYANKLIGGHCYMKGL GERRRV IARELVMRPH+LFIDEPLYHLDSVSALLMMVTLKK
Sbjct: 241 DYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKK 300
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 352
LAS GCTL+FTI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP
Sbjct: 301 LASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 360
Query: 353 SDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMI 412
SDHFLRAINTDFDRIIAMCK+WQDD+GDFS+VNMDTAVAIRTLEATY+SSADA +VE MI
Sbjct: 361 SDHFLRAINTDFDRIIAMCKNWQDDNGDFSAVNMDTAVAIRTLEATYKSSADADSVEAMI 420
Query: 413 LRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFS 472
++LTE+EG LKSKGKA +ATRVAVLTWRSLL+MSREWKYYWLRLIL MILTL +GT++S
Sbjct: 421 IKLTEREGTQLKSKGKAGAATRVAVLTWRSLLVMSREWKYYWLRLILYMILTLSIGTLYS 480
Query: 473 GLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQL 532
GLGHSLSSV TRVAA+FVFVSF SLL IAG+P+L+KEIK Y SE SN HSGA VFLLGQ
Sbjct: 481 GLGHSLSSVATRVAAVFVFVSFASLLGIAGIPSLLKEIKIYRSEASNQHSGAFVFLLGQF 540
Query: 533 LSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVY 592
L SIPFLFL+SISSSLVFYF+VGLRD+FSLLMYFVLNFFMCLLVNEGLML +A IW+DVY
Sbjct: 541 LGSIPFLFLMSISSSLVFYFMVGLRDDFSLLMYFVLNFFMCLLVNEGLMLFIACIWRDVY 600
Query: 593 WSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPV 652
WS LTLISVHV+MML+AG+FRIR ALP PVWTYP +Y++FHTYSI+GLLENEYLG F V
Sbjct: 601 WSTLTLISVHVIMMLAAGHFRIRTALPKPVWTYPFAYISFHTYSIEGLLENEYLGEVFAV 660
Query: 653 GQVRTISGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKNTFIHKL 712
G+VR+ISGYQA+Q Y IS +N+KW N+LVL MA GYRLL++VLL + KN +
Sbjct: 661 GEVRSISGYQAIQGNYQISPDTNAKWRNMLVLLAMAFGYRLLVYVLLRFGLNKN--VSGR 718
Query: 713 FKCDHDTNN 721
H NN
Sbjct: 719 LLLSHKKNN 727
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RXN0|AB11G_ARATH ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 412 bits (1058), Expect = e-114, Method: Compositional matrix adjust.
Identities = 225/589 (38%), Positives = 362/589 (61%), Gaps = 11/589 (1%)
Query: 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163
A + W+DLTV + + V++ GYA PG++T +MGP+ SGKST+L A+A RL +
Sbjct: 48 ARLTWQDLTVMVTMGDGETQNVLEGLTGYAEPGSLTALMGPSGSGKSTMLDALASRLAAN 107
Query: 164 ARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPG--FFCQRKNV 221
A + G V +NG K+++ +G+ +V ++ LIG+LTVRE ++YSA ++LP +++ +
Sbjct: 108 AFLSGTVLLNGRKTKLSFGTAAYVTQDDNLIGTLTVRETIWYSARVRLPDKMLRSEKRAL 167
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
VE I M L D A+ +IG + +++G+ GE+RRV IA E++MRP +LF+DEP LDS
Sbjct: 168 VERTIIEMGLQDCADTVIG-NWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSA 226
Query: 282 SALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 341
SA + TL+ L+ G T++ +I+Q S+EVF LFDR+ LLS G T++FG+ + F+
Sbjct: 227 SAFFVTQTLRALSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAYEFFAQ 286
Query: 342 AGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQD---DHGDFSSVNMDTAVAIRTLEAT 398
AGFPCP +++PSDHFLR IN+DFD++ A K + D + TA AIR L
Sbjct: 287 AGFPCPALRNPSDHFLRCINSDFDKVRATLKGSMKLRFEASDDPLEKITTAEAIRLLVDY 346
Query: 399 YQSSADAAAVETMILRLTEKEGPFLKSKG-KASSATRVAVLTWRSLLIMSREWKYYWLRL 457
Y +S + + +++ +G L S G +AS + LT RS + MSR++ YYWLRL
Sbjct: 347 YHTSDYYYTAKAKVEEISQFKGTILDSGGSQASFLLQTYTLTKRSFINMSRDFGYYWLRL 406
Query: 458 ILCMILTLCVGTVFSGLGHSLSSVVTRVA-AIFVFVSFNSLLNIAGVPALMKEIKTYASE 516
++ +++T+C+GT++ +G S S+++ R + A FVF F + ++I G P+ ++++K + E
Sbjct: 407 LIYILVTVCIGTIYLNVGTSYSAILARGSCASFVF-GFVTFMSIGGFPSFVEDMKVFQRE 465
Query: 517 ESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLV 576
N H G F++ LS+ PFL +I+ S + YF+VGL F+ ++FVL + + V
Sbjct: 466 RLNGHYGVAAFVIANTLSATPFLIMITFISGTICYFMVGLHPGFTHYLFFVLCLYASVTV 525
Query: 577 NEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYS 636
E LM+ +ASI + I+ + + ML +G+FR+ N +P P W YP+SY++FH ++
Sbjct: 526 VESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGFFRLPNDIPKPFWRYPMSYISFHFWA 585
Query: 637 IKGLLENEYLGTSFP-VGQVRTISGYQALQSAYDISSKSNSKWGNLLVL 684
++G +N+ G +F G I G L++ + I SKW NL V+
Sbjct: 586 LQGQYQNDLRGLTFDSQGSAFKIPGEYVLENVFQIDLH-RSKWINLSVI 633
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Required for the cuticle and pollen coat development by controlling cutin and maybe wax transport to the extracellular matrix. Involved in developmental plasticity and stress responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RWI9|AB15G_ARATH ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 402 bits (1032), Expect = e-111, Method: Compositional matrix adjust.
Identities = 228/630 (36%), Positives = 383/630 (60%), Gaps = 26/630 (4%)
Query: 91 LPEGAAVARKIAGASVVWKDLTVTIKGKRRYSD----KVVKSSNGYALPGTMTVIMGPAK 146
LP ++R GA + W+DLTV I +SD ++++ NGYA PG + IMGP+
Sbjct: 13 LPSKLEMSR---GAYLAWEDLTVVIPN---FSDGPTRRLLQRLNGYAEPGRIMAIMGPSG 66
Query: 147 SGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYS 206
SGKSTLL ++AGRL + M G + +NG K+ + YG +V +E L+G+LTVRE + YS
Sbjct: 67 SGKSTLLDSLAGRLARNVVMTGNLLLNGKKARLDYGLVAYVTQEDVLLGTLTVRETITYS 126
Query: 207 ALLQLPGFFCQRK--NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264
A L+LP + + ++VE I + L D ++++IG + + +G+ GER+RV IA E++
Sbjct: 127 AHLRLPSDMSKEEVSDIVEGTIMELGLQDCSDRVIG-NWHARGVSGGERKRVSIALEILT 185
Query: 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
RP +LF+DEP LDS SA ++ L+ +A G T++ +++Q S+EVF LFD + LLS+G
Sbjct: 186 RPQILFLDEPTSGLDSASAFFVIQALRNIARDGRTVISSVHQPSSEVFALFDDLFLLSSG 245
Query: 325 NTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSS- 383
+++FGE + ++ F+ +GFPCP ++PSDHFLR IN+DFD + A K Q ++
Sbjct: 246 ESVYFGEAKSAVEFFAESGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIQETPATS 305
Query: 384 ---VNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSAT---RVAV 437
+N+ T+V L Y+ S A + ++ I L+ EG ++ + K S AT ++
Sbjct: 306 DPLMNLATSVIKARLVENYKRSKYAKSAKSRIRELSNIEGLEMEIR-KGSEATWWKQLRT 364
Query: 438 LTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSL 497
LT RS + M R+ YYW R+I +++++ VGT+F +G+S +S++ RV+ F +
Sbjct: 365 LTARSFINMCRDVGYYWTRIISYIVVSISVGTIFYDVGYSYTSILARVSCGGFITGFMTF 424
Query: 498 LNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLR 557
++I G P+ ++E+K + E + + G V++L +SS PFL IS+ + + Y LV R
Sbjct: 425 MSIGGFPSFLEEMKVFYKERLSGYYGVSVYILSNYISSFPFLVAISVITGTITYNLVKFR 484
Query: 558 DEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNA 617
FS +F LN F + V E LM+VVAS+ + ++T + ++M+++G+FR+
Sbjct: 485 PGFSHYAFFCLNIFFSVSVIESLMMVVASVVPNFLMGLITGAGLIGIIMMTSGFFRLLPD 544
Query: 618 LPGPVWTYPISYVAFHTYSIKGLLENEYLGTSF-PV--GQVRTISGYQALQSAYDISSKS 674
LP W YP+SY+++ +++I+G +N++LG F P+ G+ + ++G + ++ + + +
Sbjct: 545 LPKIFWRYPVSYISYGSWAIQGGYKNDFLGLEFEPLFPGEPK-MTGEEVIEKVFGVKV-T 602
Query: 675 NSKWGNLLVLFLMAIGYRLLLFVLLYLRVK 704
SKW +L + + + YRLL FV+L LR +
Sbjct: 603 YSKWWDLAAVVAILVCYRLLFFVVLKLRER 632
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8K2|AB12G_ARATH ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 388 bits (997), Expect = e-107, Method: Compositional matrix adjust.
Identities = 228/645 (35%), Positives = 378/645 (58%), Gaps = 32/645 (4%)
Query: 78 LSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKG-----KRRYSDKVVKSSNGY 132
L ++G P PP A + R GA + W+DLTV I RR D + NG+
Sbjct: 3 LESTSNGRRPPPP----AEIGR---GAYLAWEDLTVVIPNFSGGPTRRLLDGL----NGH 51
Query: 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETT 192
A PG + IMGP+ SGKSTLL ++AGRL + M G + +NG K+ + YG +V +E
Sbjct: 52 AEPGRIMAIMGPSGSGKSTLLDSLAGRLARNVIMTGNLLLNGKKARLDYGLVAYVTQEDI 111
Query: 193 LIGSLTVREYLYYSALLQLPGFFCQRK--NVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250
L+G+LTVRE + YSA L+L + + ++VE I + L D A+++IG + + +G+
Sbjct: 112 LMGTLTVRETITYSAHLRLSSDLTKEEVNDIVEGTIIELGLQDCADRVIG-NWHSRGVSG 170
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGC-TLLFTINQSST 309
GER+RV +A E++ RP +LF+DEP LDS SA ++ L+ +A G T++ +I+Q S+
Sbjct: 171 GERKRVSVALEILTRPQILFLDEPTSGLDSASAFFVIQALRNIARDGGRTVVSSIHQPSS 230
Query: 310 EVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIA 369
EVF LFD + LLS+G T++FGE+ ++ F+ AGFPCP ++PSDHFLR IN+DFD + A
Sbjct: 231 EVFALFDDLFLLSSGETVYFGESKFAVEFFAEAGFPCPKKRNPSDHFLRCINSDFDTVTA 290
Query: 370 MCKSWQDDHGDFSS----VNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKS 425
K Q ++ +N+ T+ L Y+ S A + ++ I L EG
Sbjct: 291 TLKGSQRIRETPATSDPLMNLATSEIKARLVENYRRSVYAKSAKSRIRELASIEGHHGME 350
Query: 426 KGKASSAT---RVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVV 482
K S AT ++ LT RS + M R+ YYW R+++ ++++ CVGT+F +GHS +S++
Sbjct: 351 VRKGSEATWFKQLRTLTKRSFVNMCRDIGYYWSRIVIYIVVSFCVGTIFYDVGHSYTSIL 410
Query: 483 TRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLI 542
RV+ F + ++I G P+ ++E+K + E + + G V+++ +SS PFL I
Sbjct: 411 ARVSCGGFITGFMTFMSIGGFPSFIEEMKVFYKERLSGYYGVSVYIISNYVSSFPFLVAI 470
Query: 543 SISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVH 602
++ + + Y +V R S +F LN F + V E LM+VVAS+ + ++T +
Sbjct: 471 ALITGSITYNMVKFRPGVSHWAFFCLNIFFSVSVIESLMMVVASLVPNFLMGLITGAGII 530
Query: 603 VVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFP---VGQVRTIS 659
++M+++G+FR+ LP W YPIS++++ +++I+G +N++LG F G+ + ++
Sbjct: 531 GIIMMTSGFFRLLPDLPKVFWRYPISFMSYGSWAIQGAYKNDFLGLEFDPMFAGEPK-MT 589
Query: 660 GYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVK 704
G Q + + + ++SKW +L + L+ + YR+L F++L L+ +
Sbjct: 590 GEQVINKIFGVQV-THSKWWDLSAIVLILVCYRILFFIVLKLKER 633
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Involved in the secretion of cuticular wax from epidermal cells to the cuticle. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8J8|AB13G_ARATH ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 360 bits (923), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 221/643 (34%), Positives = 366/643 (56%), Gaps = 31/643 (4%)
Query: 92 PEGAAVARKIAGASVVWKDLTVTIKG-KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKS 150
PEGA V W+DLTV I + +++ NG P + IMGP+ SGKS
Sbjct: 4 PEGAMY--------VAWEDLTVVIPNFGEGATKRLLNGVNGCGEPNRILAIMGPSGSGKS 55
Query: 151 TLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210
TLL A+AGRL + M G+V VNG K + +G+ +V +E L+G+LTVRE + YSA L+
Sbjct: 56 TLLDALAGRLAGNVVMSGKVLVNGKKRRLDFGAAAYVTQEDVLLGTLTVRESISYSAHLR 115
Query: 211 LPGFFCQRK--NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHV 268
LP + + ++VE I M L + +++ IG + +++G+ GE++R+ IA E++ +P +
Sbjct: 116 LPSKLTREEISDIVEATITDMGLEECSDRTIG-NWHLRGISGGEKKRLSIALEVLTKPSL 174
Query: 269 LFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328
LF+DEP LDS SA ++ L+ +AS+G T++ +I+Q S EVF LFD + LLS G T++
Sbjct: 175 LFLDEPTSGLDSASAFFVVQILRNIASSGKTVVSSIHQPSGEVFALFDDLLLLSGGETVY 234
Query: 329 FGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIA-MCKSWQDDHGDFS----- 382
FGE + + F AGFPCP ++PSDHFLR +N+DFD + A + +S + + FS
Sbjct: 235 FGEAESATKFFGEAGFPCPSRRNPSDHFLRCVNSDFDNVTAALVESRRINDSSFSLHQLH 294
Query: 383 -SVN-------MDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSA-- 432
+ N + TA TL ++ S AAA I + G + K + +
Sbjct: 295 ETTNTLDPLDDIPTAEIRTTLVRKFKCSLYAAASRARIQEIASIVGIVTERKKGSQTNWW 354
Query: 433 TRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFV 492
++ +LT RS + MSR+ YYW+R+ + ++L++CVG++F +G + ++V++ A
Sbjct: 355 KQLRILTQRSFINMSRDLGYYWMRIAVYIVLSICVGSIFFNVGRNHTNVMSTAACGGFMA 414
Query: 493 SFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYF 552
F + ++I G + ++E+K ++ E N H G V+ + LLSS+PF+ L+ +S+S + +
Sbjct: 415 GFMTFMSIGGFQSFIEEMKVFSRERLNGHYGVAVYTVSNLLSSLPFIILMCLSTSSITIY 474
Query: 553 LVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYF 612
+V + S Y L+ + E M+++AS+ + ++ +M+LSAG+F
Sbjct: 475 MVRFQSGGSHFFYNCLDLICAITTVESCMMMIASVVPNFLMGVMLGAGYIGIMVLSAGFF 534
Query: 613 RIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSF--PVGQVRTISGYQALQSAYDI 670
R LP W YP+SY+ + ++++G +NE +G + P+ V + G LQ+ I
Sbjct: 535 RFFPDLPMVFWRYPVSYINYGAWALQGAYKNEMIGVEYDSPLPLVPKMKGELILQTVLGI 594
Query: 671 SSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKNTFIHKLF 713
+ +S SKW +L V+ ++ IGYR+ F +L R K IH L+
Sbjct: 595 NPES-SKWLDLAVVMMILIGYRIAFFAILKFREKVFPVIHMLY 636
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9H222|ABCG5_HUMAN ATP-binding cassette sub-family G member 5 OS=Homo sapiens GN=ABCG5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 199 bits (507), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 164/568 (28%), Positives = 283/568 (49%), Gaps = 55/568 (9%)
Query: 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY 167
W D+T +++++ +++K + Y G + I+G + SGK+TLL A++GRL +
Sbjct: 54 WWDIT---SCRQQWTRQILKDVSLYVESGQIMCILGSSGSGKTTLLDAMSGRLGRAGTFL 110
Query: 168 GEVFVNGA--KSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQL----PGFFCQRKNV 221
GEV+VNG + E + +V + TL+ SLTVRE L+Y+ALL + PG F Q+K
Sbjct: 111 GEVYVNGRALRREQFQDCFSYVLQSDTLLSSLTVRETLHYTALLAIRRGNPGSF-QKK-- 167
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
VE + +SLS A++LIG + + G+ GERRRV IA +L+ P V+ DEP LD +
Sbjct: 168 VEAVMAELSLSHVADRLIGNYS-LGGISTGERRRVSIAAQLLQDPKVMLFDEPTTGLDCM 226
Query: 282 SALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 341
+A ++V L +LA ++ TI+Q +E+F LFD+I +LS G +F G L F++
Sbjct: 227 TANQIVVLLVELARRNRIVVLTIHQPRSELFQLFDKIAILSFGELIFCGTPAEMLDFFND 286
Query: 342 AGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQS 401
G+PCP +P D ++ + D +S + + ++T+ ++ +E+ Y+
Sbjct: 287 CGYPCPEHSNPFDFYMDLTSVD-------TQSKERE--------IETSKRVQMIESAYKK 331
Query: 402 SADAAAVETMILRLTE-KEGPFLKSKGKASSA--TRVAVLTWR--------SLLIMSREW 450
SA I R+ K P + K K S +++ VL R L +++R
Sbjct: 332 SAICHKTLKNIERMKHLKTLPMVPFKTKDSPGVFSKLGVLLRRVTRNLVRNKLAVITRLL 391
Query: 451 KYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVS---FNSLLNIAGVPALM 507
+ + L L + V G ++ RV ++ FV + +LN + ++
Sbjct: 392 QNLIMGLFLLFFVLRVRSNVLKG------AIQDRVGLLYQFVGATPYTGMLNAVNLFPVL 445
Query: 508 KEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFV 567
+ + S++ + +L L +PF + ++ S V Y+ +GL E + YF
Sbjct: 446 RAVSDQESQDGLYQKWQM--MLAYALHVLPFSVVATMIFSSVCYWTLGLHPEVARFGYFS 503
Query: 568 LNFFMCLLVNEGLMLVVASIWK--DVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTY 625
L+ E L LV+ I + ++ S++ L+S+ V ++ +G+ R +P P
Sbjct: 504 AALLAPHLIGEFLTLVLLGIVQNPNIVNSVVALLSIAGV-LVGSGFLRNIQEMPIPFKI- 561
Query: 626 PISYVAFHTYSIKGLLENEYLGTSFPVG 653
ISY F Y + L+ NE+ G +F G
Sbjct: 562 -ISYFTFQKYCSEILVVNEFYGLNFTCG 588
|
Transporter that appears to play an indispensable role in the selective transport of the dietary cholesterol in and out of the enterocytes and in the selective sterol excretion by the liver into bile. Homo sapiens (taxid: 9606) |
| >sp|P45843|SCRT_DROME Protein scarlet OS=Drosophila melanogaster GN=st PE=1 SV=3 | Back alignment and function description |
|---|
Score = 199 bits (506), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 178/681 (26%), Positives = 316/681 (46%), Gaps = 68/681 (9%)
Query: 57 EVRVEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTV--T 114
E++V G +I + ++P LSK NS S S PL + + GA++VW+DL V
Sbjct: 21 ELQVMPVGSTIEVPSLDSTPKLSKRNS-SERSLPLRSYSKWSPTEQGATLVWRDLCVYTN 79
Query: 115 IKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174
+ G + +++ +S G PGT+ +MG + SGK+TL+ +A R P + G++ +NG
Sbjct: 80 VGGSGQRMKRIINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILING 139
Query: 175 AK-SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSL 231
+ + G+V ++ +GSLTV E+L + A L+L +R+ ++++ + L
Sbjct: 140 RRIGPFMHRISGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGL 199
Query: 232 SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK 291
A IG K L GER+R+ A EL+ P +LF DEP LDS SA ++ TL
Sbjct: 200 LSAAQTRIGSGDDKKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLY 259
Query: 292 KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQS 351
+LA G T+L TI+Q S+++F F+ + LL++G F G L F+N G+ CP +
Sbjct: 260 ELAQKGTTILCTIHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSFFANHGYYCPEAYN 319
Query: 352 PSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETM 411
P+D + + TD A +S Q F + + AA M
Sbjct: 320 PADFLIGVLATDPGYEQASQRSAQHLCDQF-------------------AVSSAAKQRDM 360
Query: 412 ILRLT---EKEGPF-----LKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMIL 463
++ L + G F ++S + R V+ R+ L + R+ WLR I + +
Sbjct: 361 LVNLEIHMAQSGNFPFDTEVESFRGVAWYKRFHVVWLRASLTLLRDPTIQWLRFIQKIAM 420
Query: 464 TLCVGTVFSGLGHSLSSVVTRV-AAIFVFVSFN------SLLNI--AGVPALMKEIKTYA 514
+G F+G V V A+F+ +S N S+LN+ G P M+E ++
Sbjct: 421 AFIIGACFAGTTEPSQLGVQAVQGALFIMISENTYHPMYSVLNLFPQGFPLFMRETRSGL 480
Query: 515 SEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCL 574
++ ++ LL ++ P +F+I + Y+L GLR F + + +
Sbjct: 481 YSTGQYYAANILALLPGMIIE-PLIFVI------ICYWLTGLRSTFYAFGVTAMCVVLVM 533
Query: 575 LVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHT 634
V ++ + V ++ L+ + + M+++G F N+LP W ++++
Sbjct: 534 NVATACGCFFSTAFNSVPLAMAYLVPLDYIFMITSGIFIQVNSLPVAFWW--TQFLSWML 591
Query: 635 YSIKGLLENEYLGTSFPVGQVRTISGYQ------ALQSAYDISSK----SNSKWGNLLVL 684
Y+ + + ++ G V+ I+ +Q + D+ K ++ + NLL +
Sbjct: 592 YANEAMTAAQWSG-------VQNITCFQESADLPCFHTGQDVLDKYSFNESNVYRNLLAM 644
Query: 685 FLMAIGYRLLLFVLLYLRVKK 705
+ G+ LL + L+ R +K
Sbjct: 645 VGLYFGFHLLGYYCLWRRARK 665
|
Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. Scarlet and white complex transports a metabolic intermediate (such as 3-hydroxy kynurenine) from the cytoplasm into the pigment granules. Drosophila melanogaster (taxid: 7227) |
| >sp|Q80W57|ABCG2_RAT ATP-binding cassette sub-family G member 2 OS=Rattus norvegicus GN=Abcg2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 197 bits (500), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 176/665 (26%), Positives = 300/665 (45%), Gaps = 62/665 (9%)
Query: 78 LSKLNSGSLPSPPLPEGAAVARKIAGASVV-WKDLTVTIKGK-----RRYSDKVVKSS-N 130
+S+ N LP + AR +A V+ + +T +K K R+ ++K + S N
Sbjct: 12 MSQRNKNGLPG----MSSRGARTLAEGDVLSFHHITYRVKVKSGFLVRKTAEKEILSDIN 67
Query: 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG-SYGFVER 189
G PG + I+GP GKS+LL +A R + G+V +NGA + S G+V +
Sbjct: 68 GIMKPG-LNAILGPTGGGKSSLLDVLAAR-KDPRGLSGDVLINGAPQPANFKCSSGYVVQ 125
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247
+ ++G+LTVRE L +SA L+LP ++ + I + L A+ +G + +G
Sbjct: 126 DDVVMGTLTVRENLQFSAALRLPKAMKTHEKNERINTIIKELGLDKVADSKVGTQ-FTRG 184
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307
+ GER+R I EL+ P +LF+DEP LDS +A +++ LK+++ G T++F+I+Q
Sbjct: 185 ISGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQP 244
Query: 308 STEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRI 367
+F LFD + LL++G +F G L++F++AG+ C +P+D FL IN D +
Sbjct: 245 RYSIFKLFDSLTLLASGKLMFHGPAQKALEYFASAGYHCEPYNNPADFFLDVINGDSSAV 304
Query: 368 IAMCKSWQDDH--GDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKS 425
M + DH + I L Y +S + + +L +
Sbjct: 305 --MLNRGEQDHEANKTEEPSKREKPIIENLAEFYINSTIYGETKAELDQLP------VAQ 356
Query: 426 KGKASSATRVAV--------LTW---RSLLIMSREWKYYWLRLILCMILTLCVGTVFSGL 474
K K SSA R V L W RS + + +LI+ +IL L +G ++ GL
Sbjct: 357 KKKGSSAFREPVYVTSFCHQLRWIARRSFKNLLGNPQASVAQLIVTVILGLIIGALYFGL 416
Query: 475 GHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLS 534
+ + + R F + +++ V + E K + E + + + G+L+S
Sbjct: 417 KNDPTGMQNRAGVFFFLTTNQCFTSVSAVELFVVEKKLFIHEYISGYYRVSSYFFGKLVS 476
Query: 535 S-IPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYW 593
+P FL S+ + + YF++GL+ + M + L +A+ V
Sbjct: 477 DLLPMRFLPSVIYTCILYFMLGLKRTVEAFFIMMFTLIMVAYTASSMALAIAAGQSVVSV 536
Query: 594 SILTLISVHVVMMLSAGYF-RIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPV 652
+ L + V MML +G +R P W + Y + Y L NE+LG F
Sbjct: 537 ATLLMTISFVFMMLFSGLLVNLRTIGP---WLSWLQYFSIPRYGFTALQHNEFLGQEFCP 593
Query: 653 GQVRTISGYQALQSAYDISSKSN---------SKWG--------NLLVLFLMAIGYRLLL 695
G T++ ++Y I + ++ S WG +++ + I Y LL
Sbjct: 594 GLNVTMN--STCVNSYTICTGNDYLINQGIDLSPWGLWRNHVALACMIIIFLTIAYLKLL 651
Query: 696 FVLLY 700
F+ Y
Sbjct: 652 FLKKY 656
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Rattus norvegicus (taxid: 10116) |
| >sp|Q4GZT4|ABCG2_BOVIN ATP-binding cassette sub-family G member 2 OS=Bos taurus GN=ABCG2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 146/547 (26%), Positives = 263/547 (48%), Gaps = 18/547 (3%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAK 176
++ +++ + NG PG + I+GP GKS+LL +A R PH + G+V +NGA
Sbjct: 55 RKTIEKEILANINGVMKPG-LNAILGPTGGGKSSLLDILAARKDPHG--LSGDVLINGAP 111
Query: 177 SEMPYG-SYGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSLSD 233
+ + G+V ++ ++G+LTVRE L +SA L+LP ++ + I + L
Sbjct: 112 RPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTSYEKNERINKVIQELGLDK 171
Query: 234 YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
A+ +G +++G+ GER+R IA EL+ P +LF+DEP LDS +A +++ LK++
Sbjct: 172 VADSKVGTQ-FIRGVSGGERKRTSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRM 230
Query: 294 ASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPS 353
+ G T++F+I+Q +F LFD + LL++G +F G L +F GF C +P+
Sbjct: 231 SKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALGYFGAIGFRCEPYNNPA 290
Query: 354 DHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMIL 413
D FL IN D ++ + D+ + + I L Y +S+ + +
Sbjct: 291 DFFLDIINGDSSAVVLNREDIGDEANETEEPSKKDTPLIEKLAEFYVNSSFFKETKVELD 350
Query: 414 RLT----EKEGPFLKSKGKASS-ATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVG 468
+ + K+ P K A+S ++ ++ RS + + +LI+ + L L +G
Sbjct: 351 KFSGDQRRKKLPSYKEVTYATSFCHQLKWISRRSFKNLLGNPQASIAQLIVTVFLGLVIG 410
Query: 469 TVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFL 528
+F L + + + R +F + +++ V L+ E K + E + + +
Sbjct: 411 AIFYDLKNDPAGIQNRAGVLFFLTTNQCFSSVSAVELLVVEKKLFIHEYISGYYRVSSYF 470
Query: 529 LGQLLSS-IPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASI 587
G+LLS +P L SI + + YFL+GL+ + +L M + L +A+
Sbjct: 471 FGKLLSDLLPMRMLPSIIFTCITYFLLGLKPKVEAFFIMMLTLMMVAYSASSMALAIAAG 530
Query: 588 WKDVYWSILTLISVHVVMMLSAGYF-RIRNALPGPVWTYPISYVAFHTYSIKGLLENEYL 646
V + L + V MM+ +G ++ +P W + Y++ Y L NE+L
Sbjct: 531 QSVVSIATLLMTISFVFMMIFSGLLVNLKTVVP---WLSWLQYLSIPRYGYAALQHNEFL 587
Query: 647 GTSFPVG 653
G +F G
Sbjct: 588 GQNFCPG 594
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Bos taurus (taxid: 9913) |
| >sp|Q8MIB3|ABCG2_PIG ATP-binding cassette sub-family G member 2 OS=Sus scrofa GN=ABCG2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (489), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 165/601 (27%), Positives = 285/601 (47%), Gaps = 42/601 (6%)
Query: 78 LSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGK------RRYSDK-VVKSSN 130
+SK N+ LP E A GA + + D+ +K K R+ +K ++ + N
Sbjct: 12 MSKRNTNGLPGSSSNELKTSA---GGAVLSFHDICYRVKVKSGFLFCRKTVEKEILTNIN 68
Query: 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYG-SYGFVE 188
G PG + I+GP GKS+LL +A R PH + G+V +NGA + + G+V
Sbjct: 69 GIMKPG-LNAILGPTGGGKSSLLDVLAARKDPHG--LSGDVLINGAPRPANFKCNSGYVV 125
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246
++ ++G+LTVRE L +SA L+LP ++ + I + L A+ +G +++
Sbjct: 126 QDDVVMGTLTVRENLQFSAALRLPTTMTNHEKNERINMVIQELGLDKVADSKVGTQ-FIR 184
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 306
G+ GER+R IA EL+ P +LF+DEP LDS +A +++ LK+++ G T++F+I+Q
Sbjct: 185 GVSGGERKRTSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQ 244
Query: 307 SSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDR 366
+F LFD + LL++G +F G L +F++ G+ C +P+D FL IN D
Sbjct: 245 PRYSIFKLFDSLTLLASGRLMFHGPAREALGYFASIGYNCEPYNNPADFFLDVINGDSSA 304
Query: 367 IIAMCKSWQDDHGDFSSV--NMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLK 424
++ + ++ +D+ DT + I L A Y +S + + + L + G +
Sbjct: 305 VV-LSRADRDEGAQEPEEPPEKDTPL-IDKLAAFYTNS---SFFKDTKVELDQFSGG--R 357
Query: 425 SKGKASSATRVAVLT-------W---RSLLIMSREWKYYWLRLILCMILTLCVGTVFSGL 474
K K+S V T W RS + + ++I+ +IL L +G +F L
Sbjct: 358 KKKKSSVYKEVTYTTSFCHQLRWISRRSFKNLLGNPQASVAQIIVTIILGLVIGAIFYDL 417
Query: 475 GHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLS 534
+ S + R +F + +++ V L+ E K + E + + + G+LLS
Sbjct: 418 KNDPSGIQNRAGVLFFLTTNQCFSSVSAVELLVVEKKLFIHEYISGYYRVSSYFFGKLLS 477
Query: 535 S-IPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYW 593
+P L SI + + YFL+GL+ + M + L +A+ V
Sbjct: 478 DLLPMRMLPSIIFTCITYFLLGLKPAVGSFFIMMFTLMMVAYSASSMALAIAAGQSVVSV 537
Query: 594 SILTLISVHVVMMLSAGYF-RIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPV 652
+ L + V MM+ +G ++ +P W + Y + Y L NE+LG +F
Sbjct: 538 ATLLMTISFVFMMIFSGLLVNLKTVVP---WLSWLQYFSIPRYGFSALQYNEFLGQNFCP 594
Query: 653 G 653
G
Sbjct: 595 G 595
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Sus scrofa (taxid: 9823) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 723 | ||||||
| 255565401 | 722 | ATP-binding cassette transporter, putati | 0.998 | 1.0 | 0.882 | 0.0 | |
| 225436522 | 722 | PREDICTED: ABC transporter G family memb | 0.998 | 1.0 | 0.872 | 0.0 | |
| 356550154 | 724 | PREDICTED: ABC transporter G family memb | 0.997 | 0.995 | 0.857 | 0.0 | |
| 449501234 | 721 | PREDICTED: ABC transporter G family memb | 0.997 | 1.0 | 0.851 | 0.0 | |
| 449459100 | 721 | PREDICTED: ABC transporter G family memb | 0.997 | 1.0 | 0.851 | 0.0 | |
| 356543496 | 724 | PREDICTED: ABC transporter G family memb | 0.997 | 0.995 | 0.855 | 0.0 | |
| 358348033 | 725 | White-brown-complex ABC transporter fami | 0.997 | 0.994 | 0.842 | 0.0 | |
| 30683745 | 730 | ABC-2 type transporter-like protein [Ara | 0.994 | 0.984 | 0.810 | 0.0 | |
| 297826143 | 730 | abc transporter family protein [Arabidop | 0.994 | 0.984 | 0.812 | 0.0 | |
| 4063751 | 705 | putative ABC transporter [Arabidopsis th | 0.954 | 0.978 | 0.779 | 0.0 |
| >gi|255565401|ref|XP_002523691.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223536995|gb|EEF38631.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1310 bits (3391), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 638/723 (88%), Positives = 690/723 (95%), Gaps = 1/723 (0%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDVEVRV 60
MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTD++VR+
Sbjct: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDIDVRM 60
Query: 61 EEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR 120
EEGGDSIN A TPASPSLSKLNSGSLPSPPLP+ VARKIAGASVVWKDLTVTIKGKR+
Sbjct: 61 EEGGDSINLAVTPASPSLSKLNSGSLPSPPLPDSTVVARKIAGASVVWKDLTVTIKGKRK 120
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
YSDKVVKSS+GYALPGTMTVIMGPAKSGKSTLLRAIAGRL HSA+MYGEVFVNGAKS +P
Sbjct: 121 YSDKVVKSSSGYALPGTMTVIMGPAKSGKSTLLRAIAGRLHHSAKMYGEVFVNGAKSRLP 180
Query: 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG 240
YGSYGFVERETTLIGSLTV+EYLYYSALLQLPGFFC++K+VVEDAIHAMSL+DYANKLIG
Sbjct: 181 YGSYGFVERETTLIGSLTVQEYLYYSALLQLPGFFCKKKSVVEDAIHAMSLTDYANKLIG 240
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
GHCYMKGL GERRRV +ARELVMRPH+LFIDEPLYHLDSVSALLMMVTLKKLASTGCTL
Sbjct: 241 GHCYMKGLRNGERRRVSMARELVMRPHILFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
Query: 301 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
+FTI QSSTEVFGLFDRICLLSNGNTLFFGETL+CLQHFSNAGFPCPIMQSPSDHFLRAI
Sbjct: 301 IFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLSCLQHFSNAGFPCPIMQSPSDHFLRAI 360
Query: 361 NTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEG 420
NTDFDRIIAMCK+WQDD GDFSSVNMDTAVAIRTLEATY+SSADAAAVETM LRLTEKEG
Sbjct: 361 NTDFDRIIAMCKNWQDD-GDFSSVNMDTAVAIRTLEATYKSSADAAAVETMTLRLTEKEG 419
Query: 421 PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSS 480
P+LKSKGKASSATR+AVLTWRSLLIMSREWKYYWLRLILCM+LTLC+GTVFSGLGHSLSS
Sbjct: 420 PYLKSKGKASSATRIAVLTWRSLLIMSREWKYYWLRLILCMLLTLCIGTVFSGLGHSLSS 479
Query: 481 VVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLF 540
VVTRVAAIFVFVSF SL+ IAGVP+L KEIK YASEESN HSGALVFLLGQLLSSIPFLF
Sbjct: 480 VVTRVAAIFVFVSFTSLIGIAGVPSLQKEIKIYASEESNRHSGALVFLLGQLLSSIPFLF 539
Query: 541 LISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLIS 600
LISISSSLVFYFL+GLRDEFSLLMYFVLNFF+ LLVNEGLML++ S+W+ V+WSILT++S
Sbjct: 540 LISISSSLVFYFLIGLRDEFSLLMYFVLNFFISLLVNEGLMLLITSLWQHVFWSILTMVS 599
Query: 601 VHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISG 660
+HVVMMLSAGYFRIRNALPGPVWTYP+SY+AFHTYSI+GLLENEYLGTSF VG+VRTISG
Sbjct: 600 IHVVMMLSAGYFRIRNALPGPVWTYPVSYIAFHTYSIQGLLENEYLGTSFAVGEVRTISG 659
Query: 661 YQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKNTFIHKLFKCDHDTN 720
+QAL+SAYDISS SNSKW N+L+LFLMAIGYR+L+F++L+ RV K+ + K +C+ DTN
Sbjct: 660 FQALRSAYDISSDSNSKWENILILFLMAIGYRILVFIVLHFRVGKSESVLKFCRCNQDTN 719
Query: 721 NHR 723
N R
Sbjct: 720 NPR 722
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225436522|ref|XP_002273792.1| PREDICTED: ABC transporter G family member 3 [Vitis vinifera] gi|297734935|emb|CBI17169.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1305 bits (3376), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 631/723 (87%), Positives = 685/723 (94%), Gaps = 1/723 (0%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDVEVRV 60
MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTD++VRV
Sbjct: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDIDVRV 60
Query: 61 EEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR 120
EEGGDSI+ AT PASPSLSKLNSGSLPSPPLPE A ARKIAGAS+VWKDLTVTIKGKR+
Sbjct: 61 EEGGDSIHIAT-PASPSLSKLNSGSLPSPPLPESAIFARKIAGASIVWKDLTVTIKGKRK 119
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
YSDKVVKSSNGY LPGTMTVIMGPAKSGKSTLLRA+AGRL +SA+MYGEVFVNG K +P
Sbjct: 120 YSDKVVKSSNGYTLPGTMTVIMGPAKSGKSTLLRALAGRLHNSAKMYGEVFVNGTKRHLP 179
Query: 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG 240
YGSYGFVERETTLIGSLTVRE+LYYSALLQLPGFFCQ+K+VVED+IHAMSL DYANKLIG
Sbjct: 180 YGSYGFVERETTLIGSLTVREFLYYSALLQLPGFFCQKKSVVEDSIHAMSLGDYANKLIG 239
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
GHCYMKGLP GERRRV IARELVMRPH+LFIDEPLYHLDSVSALLMMVTLKKLASTGCTL
Sbjct: 240 GHCYMKGLPSGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 299
Query: 301 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
+FTI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI
Sbjct: 300 IFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 359
Query: 361 NTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEG 420
NTDFDRIIAMCK+WQDDHGDFSSVNMDTAVAIRTLEATY+SS DAAAVE+MI++LT+KEG
Sbjct: 360 NTDFDRIIAMCKNWQDDHGDFSSVNMDTAVAIRTLEATYKSSVDAAAVESMIIKLTDKEG 419
Query: 421 PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSS 480
P LKSKGKASSATR+AVLTWRSLLIMSREWKY+WLRL+LCM+ TLCVGTVFSGLGHSLSS
Sbjct: 420 PLLKSKGKASSATRIAVLTWRSLLIMSREWKYFWLRLVLCMLFTLCVGTVFSGLGHSLSS 479
Query: 481 VVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLF 540
VVTRVAAIFVFVSF SLL+IAGVPA +KEIK YA EESN HSGALVFLLGQLL+SIPFLF
Sbjct: 480 VVTRVAAIFVFVSFTSLLSIAGVPAHLKEIKIYACEESNQHSGALVFLLGQLLASIPFLF 539
Query: 541 LISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLIS 600
LIS+SSSL+FYFL+GLRDEFSLLMYFVLNFF CLLVNEGL LVVASIW+D +WSILTL+
Sbjct: 540 LISVSSSLIFYFLIGLRDEFSLLMYFVLNFFTCLLVNEGLTLVVASIWQDAFWSILTLVC 599
Query: 601 VHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISG 660
+HV+MMLSAGYFR+R+ALPGPVWTYP+SY+AFHTY+I+GLLENEY+GTSF VGQVR+ISG
Sbjct: 600 IHVLMMLSAGYFRLRSALPGPVWTYPLSYIAFHTYAIQGLLENEYIGTSFAVGQVRSISG 659
Query: 661 YQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKNTFIHKLFKCDHDTN 720
YQAL+SAYDIS SNSKWGNLLVLFLMA+GYR+L+FVLL RV+KN + F+C+ +TN
Sbjct: 660 YQALRSAYDISPNSNSKWGNLLVLFLMAVGYRILVFVLLRFRVRKNVSACRFFQCNQNTN 719
Query: 721 NHR 723
+ R
Sbjct: 720 DAR 722
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550154|ref|XP_003543454.1| PREDICTED: ABC transporter G family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1267 bits (3278), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 619/722 (85%), Positives = 672/722 (93%), Gaps = 1/722 (0%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDVEVRV 60
MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTD++VRV
Sbjct: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDIDVRV 60
Query: 61 EEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR 120
EEGGDSIN ATTPASPSLSKLNSGSLPSP LPEGA + RKIAGASV WKDLT+TIKGKR+
Sbjct: 61 EEGGDSINVATTPASPSLSKLNSGSLPSPRLPEGAVIPRKIAGASVAWKDLTITIKGKRK 120
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
YSDKV+KSS GYALPGTMTVIMGPAKSGKSTLLRAIAGRL SARMYGEVFVNGAKS+MP
Sbjct: 121 YSDKVIKSSTGYALPGTMTVIMGPAKSGKSTLLRAIAGRLHPSARMYGEVFVNGAKSQMP 180
Query: 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG 240
YGSYG+VERETTLIGSLTVRE+LYYSALLQLPGFFCQ+K+VVEDAIHAMSL D+ANKLIG
Sbjct: 181 YGSYGYVERETTLIGSLTVREFLYYSALLQLPGFFCQKKSVVEDAIHAMSLGDHANKLIG 240
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
GHCYMKGLP GERR V IARELVMRPH+LFIDEPLYHLDSVSALLMMVTLK+LASTG TL
Sbjct: 241 GHCYMKGLPSGERRLVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKRLASTGYTL 300
Query: 301 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
+ TI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI
Sbjct: 301 IVTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
Query: 361 NTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEG 420
NTDFDRIIAMCK+WQDD+GDFSSVNMDTAVAIRTLEATY+SSADAAAVETMIL+LTEKEG
Sbjct: 361 NTDFDRIIAMCKNWQDDNGDFSSVNMDTAVAIRTLEATYKSSADAAAVETMILKLTEKEG 420
Query: 421 PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSS 480
P LKSKGKAS+ATR+AVLTWRSLL++SREW YYWL L L M+LTLC+GTVFSGLGHSLSS
Sbjct: 421 PVLKSKGKASNATRIAVLTWRSLLVVSREWNYYWLHLTLYMLLTLCIGTVFSGLGHSLSS 480
Query: 481 VVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLF 540
VVTRVAAIFVFVSF SLL+IA VPAL+KEIK YA EESN HS LVFLL QLLSSIPFLF
Sbjct: 481 VVTRVAAIFVFVSFCSLLSIARVPALLKEIKIYACEESNQHSSTLVFLLAQLLSSIPFLF 540
Query: 541 LISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLIS 600
LISISSSLVFYFLVGL D+FSLLMYFVLNFFM LLVNEGLMLVVA++W+DV+WS+LTL+
Sbjct: 541 LISISSSLVFYFLVGLEDQFSLLMYFVLNFFMTLLVNEGLMLVVATLWQDVFWSVLTLLC 600
Query: 601 VHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISG 660
+HV MML AGYFR+RNALPGP+W YP+SY+AFHTYSI+GLLENEYLGTSF VGQVRTISG
Sbjct: 601 IHVAMMLPAGYFRVRNALPGPMWVYPMSYIAFHTYSIQGLLENEYLGTSFAVGQVRTISG 660
Query: 661 YQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKNTFIHKLFKCDH-DT 719
+QALQ+ Y+IS +NSKW NLLVLFLMAIGYR+ +F+LL+ V + + K FKC++ DT
Sbjct: 661 FQALQNVYNISPDTNSKWKNLLVLFLMAIGYRIFVFILLFFSVGRKISLRKCFKCNNRDT 720
Query: 720 NN 721
+
Sbjct: 721 TD 722
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449501234|ref|XP_004161314.1| PREDICTED: ABC transporter G family member 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1266 bits (3275), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 614/721 (85%), Positives = 676/721 (93%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDVEVRV 60
MEEIQSQSDNYRSSSSSASSP SRVPSSNFFYLRKPGSLRQPISFEDSP+WE+TD++VR+
Sbjct: 1 MEEIQSQSDNYRSSSSSASSPVSRVPSSNFFYLRKPGSLRQPISFEDSPDWEETDIDVRI 60
Query: 61 EEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR 120
EEGGDSINAATTPASPSLSKLNS SLPSPPLPEGA V RKI+GA + WKDLTVTIKGKR+
Sbjct: 61 EEGGDSINAATTPASPSLSKLNSCSLPSPPLPEGAGVGRKISGAYIAWKDLTVTIKGKRK 120
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRA+AGRL SA+MYGE+FVNG KS MP
Sbjct: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRALAGRLHRSAKMYGELFVNGTKSRMP 180
Query: 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG 240
YGSYGFVE+ETTLIGSLTVRE+L+YSALLQLPGFF Q+KNVVEDAIHAMSLSDYANKLIG
Sbjct: 181 YGSYGFVEKETTLIGSLTVREFLFYSALLQLPGFFFQKKNVVEDAIHAMSLSDYANKLIG 240
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
GHCYMKGLP GERRRV IARELVMRP +LFIDEPLYHLDSVSALLMMVTLKKLASTGCTL
Sbjct: 241 GHCYMKGLPNGERRRVSIARELVMRPQILFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
Query: 301 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
+FTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF+NAGFPCPIMQSPSDHFLRAI
Sbjct: 301 VFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFANAGFPCPIMQSPSDHFLRAI 360
Query: 361 NTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEG 420
NTDFDRIIAMCK+WQDD G+FSSVNMDTAVAIRTLEATY+SSADAAAVETMILRLT+KEG
Sbjct: 361 NTDFDRIIAMCKNWQDDQGEFSSVNMDTAVAIRTLEATYKSSADAAAVETMILRLTDKEG 420
Query: 421 PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSS 480
P LKSKGKAS+ TR+AVLTWRSLL+MSREWKYYWLRLIL M+L +C+GTVFSGLGHSLSS
Sbjct: 421 PSLKSKGKASNLTRIAVLTWRSLLVMSREWKYYWLRLILYMLLAVCIGTVFSGLGHSLSS 480
Query: 481 VVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLF 540
VVTRVAA+FVFVSF SLL++AGVPALM+E+K Y SEESN HSGA VFLLGQLLSSIPFLF
Sbjct: 481 VVTRVAAVFVFVSFTSLLSVAGVPALMREVKIYNSEESNYHSGAFVFLLGQLLSSIPFLF 540
Query: 541 LISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLIS 600
LISISSSLVFYFL+GLRDEF LLMYFVLNFFMCLLVNEGL+LV+AS+W++++W +LTL+S
Sbjct: 541 LISISSSLVFYFLIGLRDEFKLLMYFVLNFFMCLLVNEGLILVMASLWRNIFWIVLTLVS 600
Query: 601 VHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISG 660
HV+MMLSAGYFRIRNALPGPVWTYP+SY+AFHTYSI+GLLENEYLG+SF VG+VR I+G
Sbjct: 601 AHVLMMLSAGYFRIRNALPGPVWTYPLSYIAFHTYSIQGLLENEYLGSSFAVGEVRNITG 660
Query: 661 YQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKNTFIHKLFKCDHDTN 720
YQAL SAY+ISS ++SKW NLLVLFLM + YR+++F+LL RV K + K F+C+ D
Sbjct: 661 YQALHSAYEISSNTHSKWKNLLVLFLMVVAYRIIVFILLRFRVGKFMSLRKGFRCNRDMK 720
Query: 721 N 721
+
Sbjct: 721 D 721
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459100|ref|XP_004147284.1| PREDICTED: ABC transporter G family member 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1265 bits (3273), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 614/721 (85%), Positives = 676/721 (93%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDVEVRV 60
MEEIQSQSDNYRSSSSSASSP SRVPSSNFFYLRKPGSLRQPISFEDSP+WE+TD++VR+
Sbjct: 1 MEEIQSQSDNYRSSSSSASSPVSRVPSSNFFYLRKPGSLRQPISFEDSPDWEETDIDVRI 60
Query: 61 EEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR 120
EEGGDSINAATTPASPSLSKLNS SLPSPPLPEGA V RKI+GA + WKDLTVTIKGKR+
Sbjct: 61 EEGGDSINAATTPASPSLSKLNSCSLPSPPLPEGAGVGRKISGAYIAWKDLTVTIKGKRK 120
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRA+AGRL SA+MYGE+FVNG KS MP
Sbjct: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRALAGRLHRSAKMYGELFVNGTKSRMP 180
Query: 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG 240
YGSYGFVE+ETTLIGSLTVRE+L+YSALLQLPGFF Q+KNVVEDAIHAMSLSDYANKLIG
Sbjct: 181 YGSYGFVEKETTLIGSLTVREFLFYSALLQLPGFFFQKKNVVEDAIHAMSLSDYANKLIG 240
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
GHCYMKGLP GERRRV IARELVMRP +LFIDEPLYHLDSVSALLMMVTLKKLASTGCTL
Sbjct: 241 GHCYMKGLPNGERRRVSIARELVMRPQILFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
Query: 301 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
+FTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF+NAGFPCPIMQSPSDHFLRAI
Sbjct: 301 VFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFANAGFPCPIMQSPSDHFLRAI 360
Query: 361 NTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEG 420
NTDFDRIIAMCK+WQDD G+FSSVNMDTAVAIRTLEATY+SSADAAAVETMILRLT+KEG
Sbjct: 361 NTDFDRIIAMCKNWQDDQGEFSSVNMDTAVAIRTLEATYKSSADAAAVETMILRLTDKEG 420
Query: 421 PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSS 480
P LKSKGKAS+ TR+AVLTWRSLL+MSREWKYYWLRLIL M+L +C+GTVFSGLGHSLSS
Sbjct: 421 PSLKSKGKASNLTRIAVLTWRSLLVMSREWKYYWLRLILYMLLAVCIGTVFSGLGHSLSS 480
Query: 481 VVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLF 540
VVTRVAA+FVFVSF SLL++AGVPALM+E+K Y SEESN HSGA VFLLGQLLSSIPFLF
Sbjct: 481 VVTRVAAVFVFVSFTSLLSVAGVPALMREVKIYNSEESNYHSGAFVFLLGQLLSSIPFLF 540
Query: 541 LISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLIS 600
LISISSSLVFYFL+GLRDEF LLMYFVLNFFMCLLVNEGL+LV+AS+W++++W +LTL+S
Sbjct: 541 LISISSSLVFYFLIGLRDEFKLLMYFVLNFFMCLLVNEGLILVMASLWRNIFWIVLTLVS 600
Query: 601 VHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISG 660
HV+MMLSAGYFRIRNALPGPVWTYP+SY+AFHTYSI+GLLENEYLG+SF VG+VR I+G
Sbjct: 601 AHVLMMLSAGYFRIRNALPGPVWTYPLSYIAFHTYSIQGLLENEYLGSSFAVGEVRNITG 660
Query: 661 YQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKNTFIHKLFKCDHDTN 720
YQAL SAY+ISS ++SKW NLLVLFLM + YR+++F+LL RV K + K F+C+ D
Sbjct: 661 YQALHSAYEISSNTHSKWKNLLVLFLMVVAYRIIVFILLRFRVGKFMSLRKGFRCNRDIK 720
Query: 721 N 721
+
Sbjct: 721 D 721
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356543496|ref|XP_003540196.1| PREDICTED: ABC transporter G family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1249 bits (3233), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 618/722 (85%), Positives = 670/722 (92%), Gaps = 1/722 (0%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDTDVEVRV 60
MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLR PISFEDSPEWEDTD++ RV
Sbjct: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRHPISFEDSPEWEDTDIDARV 60
Query: 61 EEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR 120
EEGGDSIN ATTPASPSLSKLNSGSLPSP LPEGA + RKIAGASV WKDLT+TIKGKR+
Sbjct: 61 EEGGDSINVATTPASPSLSKLNSGSLPSPHLPEGAVIPRKIAGASVAWKDLTITIKGKRK 120
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
YSDKV+KSS GYA+PGTMTVIMGPAKSGKSTLLRAIAGRL SARMYGEVFVNGAKS+MP
Sbjct: 121 YSDKVIKSSTGYAIPGTMTVIMGPAKSGKSTLLRAIAGRLHPSARMYGEVFVNGAKSQMP 180
Query: 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG 240
YGSYG+VERETTLIGSLTVRE+LYYSALLQLPGFFCQ+K+VVEDAIHAMSL D+ANKLIG
Sbjct: 181 YGSYGYVERETTLIGSLTVREFLYYSALLQLPGFFCQKKSVVEDAIHAMSLGDHANKLIG 240
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
GHCYMKGLP GERR V IARELVMRP +LFIDEPLYHLDSVSALLMMVTLK+LASTG TL
Sbjct: 241 GHCYMKGLPSGERRLVSIARELVMRPRILFIDEPLYHLDSVSALLMMVTLKRLASTGYTL 300
Query: 301 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
+ TI QSSTEVFGLFD ICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI
Sbjct: 301 IVTIYQSSTEVFGLFDHICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
Query: 361 NTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEG 420
NTDFDRIIAMCK+WQDD+GDFSSVNMDTAVAIRTLEATY+SSADAAAVETMIL+LTEKEG
Sbjct: 361 NTDFDRIIAMCKNWQDDNGDFSSVNMDTAVAIRTLEATYKSSADAAAVETMILKLTEKEG 420
Query: 421 PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSS 480
P LKSKGKAS+ATR+AV TWRSLL++SREWKYYWL LIL M+LTLC+GTVFSGLGHSLSS
Sbjct: 421 PVLKSKGKASNATRIAVSTWRSLLVVSREWKYYWLHLILYMLLTLCIGTVFSGLGHSLSS 480
Query: 481 VVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLF 540
VVTRVAAIFVFVSF SLL+IA VPALMKEIK YA EESN HS LVFLL QLLSSIPFLF
Sbjct: 481 VVTRVAAIFVFVSFCSLLSIARVPALMKEIKIYACEESNQHSSTLVFLLAQLLSSIPFLF 540
Query: 541 LISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLIS 600
LISISSSLVFYFLVGL D+FSLLMYFVLNFFM LLVNEGLMLVVA++W+DV+WS+LTL+
Sbjct: 541 LISISSSLVFYFLVGLEDQFSLLMYFVLNFFMTLLVNEGLMLVVATLWQDVFWSVLTLLC 600
Query: 601 VHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISG 660
+HV MMLSAGYFR+RNALPGPVW YP+SY+AFHTYSI+GLLENEYLGTSF VGQVRTISG
Sbjct: 601 IHVAMMLSAGYFRVRNALPGPVWMYPMSYIAFHTYSIQGLLENEYLGTSFAVGQVRTISG 660
Query: 661 YQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKNTFIHKLFKCDH-DT 719
+QALQ+ Y+IS SNSKW NLLVLFLMAIGYR+ +F+LL+ + + + K FKC++ DT
Sbjct: 661 FQALQNVYNISPDSNSKWKNLLVLFLMAIGYRIFVFILLFFFMGRKISLRKCFKCNNRDT 720
Query: 720 NN 721
+
Sbjct: 721 TD 722
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358348033|ref|XP_003638054.1| White-brown-complex ABC transporter family [Medicago truncatula] gi|355503989|gb|AES85192.1| White-brown-complex ABC transporter family [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1243 bits (3216), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 609/723 (84%), Positives = 670/723 (92%), Gaps = 2/723 (0%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDT-DVEVR 59
MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEW+DT D++VR
Sbjct: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWDDTTDIDVR 60
Query: 60 VEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKR 119
+EGGDSINAATTPASPSLSKLNSGSLPSP +P+GA + RKIAGASV WKDLTVTIKGKR
Sbjct: 61 ADEGGDSINAATTPASPSLSKLNSGSLPSPHIPDGAVIPRKIAGASVAWKDLTVTIKGKR 120
Query: 120 RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM 179
+YSDKV+KSS GYALPGT+TVIMGPAKSGKSTLLRAIAGRL SARMYGEVFVNGAKS+M
Sbjct: 121 KYSDKVIKSSTGYALPGTLTVIMGPAKSGKSTLLRAIAGRLHPSARMYGEVFVNGAKSQM 180
Query: 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLI 239
PYGSYG+V+RETTLIGSLTVRE+LYYSALLQLPGFFCQ+K+VVEDAIHAMSL D+ANKLI
Sbjct: 181 PYGSYGYVDRETTLIGSLTVREFLYYSALLQLPGFFCQKKSVVEDAIHAMSLGDHANKLI 240
Query: 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 299
GGHCYMKGLP GERR V IARELVMRP +LF+DEPLYHLDSVSALLMMVTL++LASTGCT
Sbjct: 241 GGHCYMKGLPSGERRLVSIARELVMRPRILFLDEPLYHLDSVSALLMMVTLRRLASTGCT 300
Query: 300 LLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRA 359
L+ TI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRA
Sbjct: 301 LIITIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRA 360
Query: 360 INTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKE 419
INTDFDRIIAMCK+WQDD+GDFSSVNMDTAVAIRTLEATY+SSADAA+VETMIL+LTEKE
Sbjct: 361 INTDFDRIIAMCKNWQDDNGDFSSVNMDTAVAIRTLEATYKSSADAASVETMILKLTEKE 420
Query: 420 GPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLS 479
GP LKSKGKAS+ATRVAVLTWRSLL++SREWKYYWL L+L M+LTLC+GTVFSGLGHSL
Sbjct: 421 GPALKSKGKASNATRVAVLTWRSLLVVSREWKYYWLHLVLYMLLTLCIGTVFSGLGHSLY 480
Query: 480 SVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFL 539
SV RVAAIF FVSF SLL+IA VPALMKEIK YA EESN HS VFLL QLLSSIPFL
Sbjct: 481 SVSARVAAIFAFVSFCSLLSIARVPALMKEIKVYACEESNQHSSTFVFLLAQLLSSIPFL 540
Query: 540 FLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLI 599
FLISI+SSLVFYFLVGL D+FSLLMYFVLNFFM LL+NEG+MLVVA++W+DV+WS+LTL+
Sbjct: 541 FLISITSSLVFYFLVGLEDQFSLLMYFVLNFFMTLLLNEGIMLVVATLWQDVFWSVLTLL 600
Query: 600 SVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTIS 659
+HVVMMLSAGYFRIR+ LPGPVW YP+SY+AFHTYSI+GLLENEYLGTSFPVGQVR+IS
Sbjct: 601 CIHVVMMLSAGYFRIRSTLPGPVWMYPMSYIAFHTYSIQGLLENEYLGTSFPVGQVRSIS 660
Query: 660 GYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKNTFIHKLFKCDH-D 718
G+ ALQ+ Y+IS S SKW NLLVLFLMAIGYR+ +F+LL+L V K + K FKC++ D
Sbjct: 661 GFLALQNVYNISPDSGSKWKNLLVLFLMAIGYRIFVFILLFLFVGKKISLLKSFKCNNRD 720
Query: 719 TNN 721
T +
Sbjct: 721 TTD 723
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30683745|ref|NP_850111.1| ABC-2 type transporter-like protein [Arabidopsis thaliana] gi|334302769|sp|Q9ZUU9.2|AB3G_ARATH RecName: Full=ABC transporter G family member 3; Short=ABC transporter ABCG.3; Short=AtABCG3; AltName: Full=White-brown complex homolog protein 3; Short=AtWBC3 gi|330252981|gb|AEC08075.1| ABC-2 type transporter-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1194 bits (3090), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 591/729 (81%), Positives = 651/729 (89%), Gaps = 10/729 (1%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDT-DVEVR 59
MEEIQSQSD YRSSSSSASSP SRVPSS+FFY+RKPGSLRQPISFEDSPEWEDT DV++R
Sbjct: 1 MEEIQSQSDLYRSSSSSASSPTSRVPSSHFFYVRKPGSLRQPISFEDSPEWEDTPDVDLR 60
Query: 60 VEE---GGDSIN-AATTPASPSLSKLNSGSLPSPPLPEGAA---VARKIAGASVVWKDLT 112
+E+ GGDSIN A TTP SPSLSK+NSGS+ SPP+PEG A V RKIAGAS+ WKDLT
Sbjct: 61 MEDEAGGGDSINDATTTPVSPSLSKMNSGSMASPPVPEGGAGTGVVRKIAGASIAWKDLT 120
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172
VT+KGKR+YSDKVVKSSNGYA PGTMTVIMGPAKSGKSTLLRA+AGRLP SA+MYGEVFV
Sbjct: 121 VTMKGKRKYSDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRLPPSAKMYGEVFV 180
Query: 173 NGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS 232
NG+KS MPYGSYGFVERET LIGSLTVRE+LYYSALLQLPGF Q+++VVEDAI AMSLS
Sbjct: 181 NGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFLFQKRSVVEDAIQAMSLS 240
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
DYANKLIGGHCYMKGL GERRRV IARELVMRPH+LFIDEPLYHLDSVSALLMMVTLKK
Sbjct: 241 DYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKK 300
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 352
LAS GCTL+FTI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP
Sbjct: 301 LASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 360
Query: 353 SDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMI 412
SDHFLRAINTDFDRIIAMCK+WQDD+GDFS+VNMDTAVAIRTLEATY+SSADA +VE MI
Sbjct: 361 SDHFLRAINTDFDRIIAMCKNWQDDNGDFSAVNMDTAVAIRTLEATYKSSADADSVEAMI 420
Query: 413 LRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFS 472
++LTE+EG LKSKGKA +ATRVAVLTWRSLL+MSREWKYYWLRLIL MILTL +GT++S
Sbjct: 421 IKLTEREGTQLKSKGKAGAATRVAVLTWRSLLVMSREWKYYWLRLILYMILTLSIGTLYS 480
Query: 473 GLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQL 532
GLGHSLSSV TRVAA+FVFVSF SLL IAG+P+L+KEIK Y SE SN HSGA VFLLGQ
Sbjct: 481 GLGHSLSSVATRVAAVFVFVSFASLLGIAGIPSLLKEIKIYRSEASNQHSGAFVFLLGQF 540
Query: 533 LSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVY 592
L SIPFLFL+SISSSLVFYF+VGLRD+FSLLMYFVLNFFMCLLVNEGLML +A IW+DVY
Sbjct: 541 LGSIPFLFLMSISSSLVFYFMVGLRDDFSLLMYFVLNFFMCLLVNEGLMLFIACIWRDVY 600
Query: 593 WSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPV 652
WS LTLISVHV+MML+AG+FRIR ALP PVWTYP +Y++FHTYSI+GLLENEYLG F V
Sbjct: 601 WSTLTLISVHVIMMLAAGHFRIRTALPKPVWTYPFAYISFHTYSIEGLLENEYLGEVFAV 660
Query: 653 GQVRTISGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKNTFIHKL 712
G+VR+ISGYQA+Q Y IS +N+KW N+LVL MA GYRLL++VLL + KN +
Sbjct: 661 GEVRSISGYQAIQGNYQISPDTNAKWRNMLVLLAMAFGYRLLVYVLLRFGLNKN--VSGR 718
Query: 713 FKCDHDTNN 721
H NN
Sbjct: 719 LLLSHKKNN 727
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297826143|ref|XP_002880954.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297326793|gb|EFH57213.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1194 bits (3089), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/729 (81%), Positives = 652/729 (89%), Gaps = 10/729 (1%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDT-DVEVR 59
MEEIQSQ D YRSSSSSASSP SRVPSS+FFY+RKPGSLRQPISFEDSPEWEDT +V++R
Sbjct: 1 MEEIQSQPDLYRSSSSSASSPTSRVPSSHFFYVRKPGSLRQPISFEDSPEWEDTPNVDLR 60
Query: 60 VEE---GGDSIN-AATTPASPSLSKLNSGSLPSPPLPEGAA---VARKIAGASVVWKDLT 112
+E+ GGDSIN A TTP SPSLSK+NSGS+ SPP+PEG A V RKIAGAS+ WKDLT
Sbjct: 61 MEDEVGGGDSINDATTTPVSPSLSKMNSGSMASPPVPEGGAGAGVVRKIAGASIAWKDLT 120
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172
VT+KGKR+YSDKVVKSSNGYA PGTMTVIMGPAKSGKSTLLRA+AGRLP SA+MYGEVFV
Sbjct: 121 VTMKGKRKYSDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRLPPSAKMYGEVFV 180
Query: 173 NGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS 232
NG+KS MPYGSYGFVERET LIGSLTVRE+LYYSALLQLPGF Q+++VVEDAI AMSLS
Sbjct: 181 NGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFLFQKRSVVEDAIQAMSLS 240
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
DYANKLIGGHCYMKGL GERRRV IARELVMRPH+LFIDEPLYHLDSVSALLMMVTLKK
Sbjct: 241 DYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKK 300
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 352
LAS GCTL+FTI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP
Sbjct: 301 LASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 360
Query: 353 SDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMI 412
SDHFLRAINTDFDRIIAMCK+WQDD+GDFS+VNMDTAVAIRTLEATY+SSADA +VETMI
Sbjct: 361 SDHFLRAINTDFDRIIAMCKNWQDDNGDFSAVNMDTAVAIRTLEATYKSSADADSVETMI 420
Query: 413 LRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFS 472
L+LTE+EG LKSKGKA +ATRVAVLTWRSLL+MSREWKYYWLRLIL MILTL +GT++S
Sbjct: 421 LKLTEREGTQLKSKGKAGAATRVAVLTWRSLLVMSREWKYYWLRLILYMILTLSIGTLYS 480
Query: 473 GLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQL 532
GLGHSLSSV TRV+A+FVFVSF SLL IAG+P+L+KEIK Y SE SN HSGA VFLLGQ
Sbjct: 481 GLGHSLSSVATRVSAVFVFVSFASLLGIAGIPSLLKEIKIYRSEASNQHSGAFVFLLGQF 540
Query: 533 LSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVY 592
L SIPFLFL+SISSSLVFYF+VGLRD+FSLLMYFVLNFFMCLLVNEGLML +A IW+DVY
Sbjct: 541 LGSIPFLFLMSISSSLVFYFMVGLRDDFSLLMYFVLNFFMCLLVNEGLMLSIACIWRDVY 600
Query: 593 WSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPV 652
WS LTLISVHV+MML+AG+FRIRNALP PVWTYP +Y++FHTYSI+GLLENEYLG F V
Sbjct: 601 WSTLTLISVHVIMMLAAGHFRIRNALPKPVWTYPFAYISFHTYSIEGLLENEYLGEVFAV 660
Query: 653 GQVRTISGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKNTFIHKL 712
G+VR+ISGYQA+Q Y IS +NSKW N+LVL MA GYRLL++VLL + KN +
Sbjct: 661 GEVRSISGYQAIQGNYQISPDTNSKWRNMLVLLAMAFGYRLLVYVLLRFGLNKN--VSGC 718
Query: 713 FKCDHDTNN 721
H NN
Sbjct: 719 LLLSHKKNN 727
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4063751|gb|AAC98459.1| putative ABC transporter [Arabidopsis thaliana] gi|20197954|gb|AAM15328.1| putative ABC transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1132 bits (2929), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/729 (77%), Positives = 624/729 (85%), Gaps = 39/729 (5%)
Query: 1 MEEIQSQSDNYRSSSSSASSPASRVPSSNFFYLRKPGSLRQPISFEDSPEWEDT-DVEVR 59
MEEIQSQSD YRSSSSSASSP SRVPSS+FFY+RKPGSLRQPISFEDSPEWEDT DV++R
Sbjct: 1 MEEIQSQSDLYRSSSSSASSPTSRVPSSHFFYVRKPGSLRQPISFEDSPEWEDTPDVDLR 60
Query: 60 VEE---GGDSIN-AATTPASPSLSKLNSGSLPSPPLPEGAA---VARKIAGASVVWKDLT 112
+E+ GGDSIN A TTP SPSLSK+NSGS+ SPP+PEG A V RKIAGAS+ WKDLT
Sbjct: 61 MEDEAGGGDSINDATTTPVSPSLSKMNSGSMASPPVPEGGAGTGVVRKIAGASIAWKDLT 120
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172
VT+KGKR+YSDKVVKSSNGYA PGTMTVIMGPAKSGKSTLLRA+AGRLP SA+MYGEVFV
Sbjct: 121 VTMKGKRKYSDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRLPPSAKMYGEVFV 180
Query: 173 NGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS 232
NG+KS MPYGSYGFVERET LIGSLTVRE+LYYSALLQLPGF Q+++VVEDAI AMSLS
Sbjct: 181 NGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFLFQKRSVVEDAIQAMSLS 240
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
DYANKLIGGHCYMKGL GERRRV IARELVMRPH+LFIDEPLYHLDSVSALLMMVTLKK
Sbjct: 241 DYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKK 300
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 352
LAS GCTL+FTI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP
Sbjct: 301 LASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 360
Query: 353 SDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMI 412
SDHFLRAINTDFDRIIAMCK+WQDD+GDFS+VNMDTAVAIRTLEATY+SSADA +VE MI
Sbjct: 361 SDHFLRAINTDFDRIIAMCKNWQDDNGDFSAVNMDTAVAIRTLEATYKSSADADSVEAMI 420
Query: 413 LRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFS 472
++LTE+EG LKSKGKA +ATRVAVLTWRSLL+MSREWKYYWLRLIL MILTL +GT++S
Sbjct: 421 IKLTEREGTQLKSKGKAGAATRVAVLTWRSLLVMSREWKYYWLRLILYMILTLSIGTLYS 480
Query: 473 GLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQL 532
GLGHSLSSV Y SE SN HSGA VFLLGQ
Sbjct: 481 GLGHSLSSVA-----------------------------IYRSEASNQHSGAFVFLLGQF 511
Query: 533 LSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVY 592
L SIPFLFL+SISSSLVFYF+VGLRD+FSLLMYFVLNFFMCLLVNEGLML +A IW+DVY
Sbjct: 512 LGSIPFLFLMSISSSLVFYFMVGLRDDFSLLMYFVLNFFMCLLVNEGLMLFIACIWRDVY 571
Query: 593 WSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPV 652
WS LTLISVHV+MML+AG+FRIR ALP PVWTYP +Y++FHTYSI+GLLENEYLG F V
Sbjct: 572 WSTLTLISVHVIMMLAAGHFRIRTALPKPVWTYPFAYISFHTYSIEGLLENEYLGEVFAV 631
Query: 653 GQVRTISGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKNTFIHKL 712
G+VR+ISGYQA+Q Y IS +N+KW N+LVL MA GYRLL++VLL + KN +
Sbjct: 632 GEVRSISGYQAIQGNYQISPDTNAKWRNMLVLLAMAFGYRLLVYVLLRFGLNKN--VSGR 689
Query: 713 FKCDHDTNN 721
H NN
Sbjct: 690 LLLSHKKNN 698
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 723 | ||||||
| TAIR|locus:2046203 | 730 | ABCG3 "ATP-binding cassette G3 | 0.954 | 0.945 | 0.752 | 5.3e-278 | |
| TAIR|locus:2030898 | 703 | ABCG11 "ATP-binding cassette G | 0.806 | 0.829 | 0.367 | 1.4e-101 | |
| TAIR|locus:2092960 | 691 | ABCG15 "ATP-binding cassette G | 0.802 | 0.839 | 0.344 | 1e-93 | |
| TAIR|locus:2033899 | 687 | ABCG12 "ATP-binding cassette G | 0.807 | 0.850 | 0.342 | 5e-92 | |
| TAIR|locus:2033939 | 678 | ABCG13 "ATP-binding cassette G | 0.751 | 0.800 | 0.334 | 3.2e-81 | |
| CGD|CAL0002254 | 579 | orf19.3120 [Candida albicans ( | 0.385 | 0.481 | 0.33 | 2.7e-47 | |
| UNIPROTKB|Q5A0X6 | 579 | CaO19.10632 "Putative uncharac | 0.385 | 0.481 | 0.33 | 2.7e-47 | |
| UNIPROTKB|F1N3L2 | 649 | ABCG5 "Uncharacterized protein | 0.721 | 0.804 | 0.288 | 1.8e-46 | |
| UNIPROTKB|Q9H222 | 651 | ABCG5 "ATP-binding cassette su | 0.717 | 0.797 | 0.282 | 2.7e-45 | |
| UNIPROTKB|E3LWM9 | 654 | Cre-wht-1 "CRE-WHT-1 protein" | 0.770 | 0.851 | 0.260 | 2.8e-44 |
| TAIR|locus:2046203 ABCG3 "ATP-binding cassette G3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2672 (945.6 bits), Expect = 5.3e-278, P = 5.3e-278
Identities = 525/698 (75%), Positives = 575/698 (82%)
Query: 1 MEEIXXXXXXXXXXXXXXXXXXXXXXXXXFFYLRKPGSLRQPISFEDSPEWEDT-DVEVR 59
MEEI FFY+RKPGSLRQPISFEDSPEWEDT DV++R
Sbjct: 1 MEEIQSQSDLYRSSSSSASSPTSRVPSSHFFYVRKPGSLRQPISFEDSPEWEDTPDVDLR 60
Query: 60 VEE---GGDSIN-AATTPAXXXXXXXXXXXXXXXXXXEGAA---VARKIAGASVVWKDLT 112
+E+ GGDSIN A TTP EG A V RKIAGAS+ WKDLT
Sbjct: 61 MEDEAGGGDSINDATTTPVSPSLSKMNSGSMASPPVPEGGAGTGVVRKIAGASIAWKDLT 120
Query: 113 VTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172
VT+KGKR+YSDKVVKSSNGYA PGTMTVIMGPAKSGKSTLLRA+AGRLP SA+MYGEVFV
Sbjct: 121 VTMKGKRKYSDKVVKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRLPPSAKMYGEVFV 180
Query: 173 NGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS 232
NG+KS MPYGSYGFVERET LIGSLTVRE+LYYSALLQLPGF Q+++VVEDAI AMSLS
Sbjct: 181 NGSKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFLFQKRSVVEDAIQAMSLS 240
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
DYANKLIGGHCYMKGL GERRRV IARELVMRPH+LFIDEPLYHLDSVSALLMMVTLKK
Sbjct: 241 DYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKK 300
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 352
LAS GCTL+FTI QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP
Sbjct: 301 LASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 360
Query: 353 SDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMI 412
SDHFLRAINTDFDRIIAMCK+WQDD+GDFS+VNMDTAVAIRTLEATY+SSADA +VE MI
Sbjct: 361 SDHFLRAINTDFDRIIAMCKNWQDDNGDFSAVNMDTAVAIRTLEATYKSSADADSVEAMI 420
Query: 413 LRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFS 472
++LTE+EG LKSKGKA +ATRVAVLTWRSLL+MSREWKYYWLRLIL MILTL +GT++S
Sbjct: 421 IKLTEREGTQLKSKGKAGAATRVAVLTWRSLLVMSREWKYYWLRLILYMILTLSIGTLYS 480
Query: 473 GLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQX 532
GLGHSLSSV TRVAA+FVFVSF SLL IAG+P+L+KEIK Y SE SN HSGA VFLLGQ
Sbjct: 481 GLGHSLSSVATRVAAVFVFVSFASLLGIAGIPSLLKEIKIYRSEASNQHSGAFVFLLGQF 540
Query: 533 XXXXXXXXXXXXXXXXXXXXXVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVY 592
VGLRD+FSLLMYFVLNFFMCLLVNEGLML +A IW+DVY
Sbjct: 541 LGSIPFLFLMSISSSLVFYFMVGLRDDFSLLMYFVLNFFMCLLVNEGLMLFIACIWRDVY 600
Query: 593 WSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPV 652
WS LTLISVHV+MML+AG+FRIR ALP PVWTYP +Y++FHTYSI+GLLENEYLG F V
Sbjct: 601 WSTLTLISVHVIMMLAAGHFRIRTALPKPVWTYPFAYISFHTYSIEGLLENEYLGEVFAV 660
Query: 653 GQVRTISGYQALQSAYDISSKSNSKWGNLLVLFLMAIG 690
G+VR+ISGYQA+Q Y IS +N+KW N+LVL MA G
Sbjct: 661 GEVRSISGYQAIQGNYQISPDTNAKWRNMLVLLAMAFG 698
|
|
| TAIR|locus:2030898 ABCG11 "ATP-binding cassette G11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1007 (359.5 bits), Expect = 1.4e-101, P = 1.4e-101
Identities = 218/594 (36%), Positives = 350/594 (58%)
Query: 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163
A + W+DLTV + + V++ GYA PG++T +MGP+ SGKST+L A+A RL +
Sbjct: 48 ARLTWQDLTVMVTMGDGETQNVLEGLTGYAEPGSLTALMGPSGSGKSTMLDALASRLAAN 107
Query: 164 ARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNV 221
A + G V +NG K+++ +G+ +V ++ LIG+LTVRE ++YSA ++LP +++ +
Sbjct: 108 AFLSGTVLLNGRKTKLSFGTAAYVTQDDNLIGTLTVRETIWYSARVRLPDKMLRSEKRAL 167
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
VE I M L D A+ +IG + +++G+ GE+RRV IA E++MRP +LF+DEP LDS
Sbjct: 168 VERTIIEMGLQDCADTVIG-NWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSA 226
Query: 282 SALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 341
SA + TL+ L+ G T++ +I+Q S+EVF LFDR+ LLS G T++FG+ + F+
Sbjct: 227 SAFFVTQTLRALSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAYEFFAQ 286
Query: 342 AGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQD---DHGDFSSVNMDTAVAIRTLEAT 398
AGFPCP +++PSDHFLR IN+DFD++ A K + D + TA AIR L
Sbjct: 287 AGFPCPALRNPSDHFLRCINSDFDKVRATLKGSMKLRFEASDDPLEKITTAEAIRLLVDY 346
Query: 399 YQSSADAAAVETMILRLTEKEGPFLKSKG-KASSATRVAVLTWRSLLIMSREWKYYWLRL 457
Y +S + + +++ +G L S G +AS + LT RS + MSR++ YYWLRL
Sbjct: 347 YHTSDYYYTAKAKVEEISQFKGTILDSGGSQASFLLQTYTLTKRSFINMSRDFGYYWLRL 406
Query: 458 ILCMILTLCVGTVFSGLGHSLSSVVTRVA-AIFVFVSFNSLLNIAGVPALMKEIKTYASE 516
++ +++T+C+GT++ +G S S+++ R + A FVF F + ++I G P+ ++++K + E
Sbjct: 407 LIYILVTVCIGTIYLNVGTSYSAILARGSCASFVF-GFVTFMSIGGFPSFVEDMKVFQRE 465
Query: 517 ESNMHSGALVFLLGQXXXXXXXXXXXXXXXXXXXXXXVGLRDEFSLLMYFVLNFFMCLLV 576
N H G F++ VGL F+ ++FVL + + V
Sbjct: 466 RLNGHYGVAAFVIANTLSATPFLIMITFISGTICYFMVGLHPGFTHYLFFVLCLYASVTV 525
Query: 577 NEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYS 636
E LM+ +ASI + I+ + + ML +G+FR+ N +P P W YP+SY++FH ++
Sbjct: 526 VESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGFFRLPNDIPKPFWRYPMSYISFHFWA 585
Query: 637 IKGLLENEYLGTSFPV-GQVRTISGYQALQSAYDISSKSNSKWGNLLVLFLMAI 689
++G +N+ G +F G I G L++ + I SKW NL V+ M I
Sbjct: 586 LQGQYQNDLRGLTFDSQGSAFKIPGEYVLENVFQIDLH-RSKWINLSVILSMII 638
|
|
| TAIR|locus:2092960 ABCG15 "ATP-binding cassette G15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
Identities = 208/603 (34%), Positives = 354/603 (58%)
Query: 103 GASVVWKDLTVTIKGKRRYSD----KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158
GA + W+DLTV I +SD ++++ NGYA PG + IMGP+ SGKSTLL ++AG
Sbjct: 22 GAYLAWEDLTVVIPN---FSDGPTRRLLQRLNGYAEPGRIMAIMGPSGSGKSTLLDSLAG 78
Query: 159 RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQR 218
RL + M G + +NG K+ + YG +V +E L+G+LTVRE + YSA L+LP +
Sbjct: 79 RLARNVVMTGNLLLNGKKARLDYGLVAYVTQEDVLLGTLTVRETITYSAHLRLPSDMSKE 138
Query: 219 K--NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276
+ ++VE I + L D ++++IG + + +G+ GER+RV IA E++ RP +LF+DEP
Sbjct: 139 EVSDIVEGTIMELGLQDCSDRVIG-NWHARGVSGGERKRVSIALEILTRPQILFLDEPTS 197
Query: 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336
LDS SA ++ L+ +A G T++ +++Q S+EVF LFD + LLS+G +++FGE + +
Sbjct: 198 GLDSASAFFVIQALRNIARDGRTVISSVHQPSSEVFALFDDLFLLSSGESVYFGEAKSAV 257
Query: 337 QHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQD-DHGDFSS---VNMDTAVAI 392
+ F+ +GFPCP ++PSDHFLR IN+DFD + A K Q +S +N+ T+V
Sbjct: 258 EFFAESGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIQETPATSDPLMNLATSVIK 317
Query: 393 RTLEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSAT---RVAVLTWRSLLIMSRE 449
L Y+ S A + ++ I L+ EG ++ + K S AT ++ LT RS + M R+
Sbjct: 318 ARLVENYKRSKYAKSAKSRIRELSNIEGLEMEIR-KGSEATWWKQLRTLTARSFINMCRD 376
Query: 450 WKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKE 509
YYW R+I +++++ VGT+F +G+S +S++ RV+ F + ++I G P+ ++E
Sbjct: 377 VGYYWTRIISYIVVSISVGTIFYDVGYSYTSILARVSCGGFITGFMTFMSIGGFPSFLEE 436
Query: 510 IKTYASEESNMHSGALVFLLGQXXXXXXXXXXXXXXXXXXXXXXVGLRDEFSLLMYFVLN 569
+K + E + + G V++L V R FS +F LN
Sbjct: 437 MKVFYKERLSGYYGVSVYILSNYISSFPFLVAISVITGTITYNLVKFRPGFSHYAFFCLN 496
Query: 570 FFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISY 629
F + V E LM+VVAS+ + ++T + ++M+++G+FR+ LP W YP+SY
Sbjct: 497 IFFSVSVIESLMMVVASVVPNFLMGLITGAGLIGIIMMTSGFFRLLPDLPKIFWRYPVSY 556
Query: 630 VAFHTYSIKGLLENEYLGTSF-PV--GQVRTISGYQALQSAYDISSKSNSKWGNLLVLFL 686
+++ +++I+G +N++LG F P+ G+ + ++G + ++ + + + SKW +L +
Sbjct: 557 ISYGSWAIQGGYKNDFLGLEFEPLFPGEPK-MTGEEVIEKVFGVKV-TYSKWWDLAAVVA 614
Query: 687 MAI 689
+ +
Sbjct: 615 ILV 617
|
|
| TAIR|locus:2033899 ABCG12 "ATP-binding cassette G12" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
Identities = 206/601 (34%), Positives = 346/601 (57%)
Query: 103 GASVVWKDLTVTIKG-KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161
GA + W+DLTV I + +++ NG+A PG + IMGP+ SGKSTLL ++AGRL
Sbjct: 21 GAYLAWEDLTVVIPNFSGGPTRRLLDGLNGHAEPGRIMAIMGPSGSGKSTLLDSLAGRLA 80
Query: 162 HSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK-- 219
+ M G + +NG K+ + YG +V +E L+G+LTVRE + YSA L+L + +
Sbjct: 81 RNVIMTGNLLLNGKKARLDYGLVAYVTQEDILMGTLTVRETITYSAHLRLSSDLTKEEVN 140
Query: 220 NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
++VE I + L D A+++IG + + +G+ GER+RV +A E++ RP +LF+DEP LD
Sbjct: 141 DIVEGTIIELGLQDCADRVIG-NWHSRGVSGGERKRVSVALEILTRPQILFLDEPTSGLD 199
Query: 280 SVSALLMMVTLKKLASTGC-TLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338
S SA ++ L+ +A G T++ +I+Q S+EVF LFD + LLS+G T++FGE+ ++
Sbjct: 200 SASAFFVIQALRNIARDGGRTVVSSIHQPSSEVFALFDDLFLLSSGETVYFGESKFAVEF 259
Query: 339 FSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSS----VNMDTAVAIRT 394
F+ AGFPCP ++PSDHFLR IN+DFD + A K Q ++ +N+ T+
Sbjct: 260 FAEAGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIRETPATSDPLMNLATSEIKAR 319
Query: 395 LEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSAT---RVAVLTWRSLLIMSREWK 451
L Y+ S A + ++ I L EG K S AT ++ LT RS + M R+
Sbjct: 320 LVENYRRSVYAKSAKSRIRELASIEGHHGMEVRKGSEATWFKQLRTLTKRSFVNMCRDIG 379
Query: 452 YYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIK 511
YYW R+++ ++++ CVGT+F +GHS +S++ RV+ F + ++I G P+ ++E+K
Sbjct: 380 YYWSRIVIYIVVSFCVGTIFYDVGHSYTSILARVSCGGFITGFMTFMSIGGFPSFIEEMK 439
Query: 512 TYASEESNMHSGALVFLLGQXXXXXXXXXXXXXXXXXXXXXXVGLRDEFSLLMYFVLNFF 571
+ E + + G V+++ V R S +F LN F
Sbjct: 440 VFYKERLSGYYGVSVYIISNYVSSFPFLVAIALITGSITYNMVKFRPGVSHWAFFCLNIF 499
Query: 572 MCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVA 631
+ V E LM+VVAS+ + ++T + ++M+++G+FR+ LP W YPIS+++
Sbjct: 500 FSVSVIESLMMVVASLVPNFLMGLITGAGIIGIIMMTSGFFRLLPDLPKVFWRYPISFMS 559
Query: 632 FHTYSIKGLLENEYLGTSF-PV--GQVRTISGYQALQSAYDISSKSNSKWGNLLVLFLMA 688
+ +++I+G +N++LG F P+ G+ + ++G Q + + + ++SKW +L + L+
Sbjct: 560 YGSWAIQGAYKNDFLGLEFDPMFAGEPK-MTGEQVINKIFGVQV-THSKWWDLSAIVLIL 617
Query: 689 I 689
+
Sbjct: 618 V 618
|
|
| TAIR|locus:2033939 ABCG13 "ATP-binding cassette G13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
Identities = 189/565 (33%), Positives = 311/565 (55%)
Query: 106 VVWKDLTVTIKGKRRYSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA 164
V W+DLTV I + K ++ NG P + IMGP+ SGKSTLL A+AGRL +
Sbjct: 10 VAWEDLTVVIPNFGEGATKRLLNGVNGCGEPNRILAIMGPSGSGKSTLLDALAGRLAGNV 69
Query: 165 RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK--NVV 222
M G+V VNG K + +G+ +V +E L+G+LTVRE + YSA L+LP + + ++V
Sbjct: 70 VMSGKVLVNGKKRRLDFGAAAYVTQEDVLLGTLTVRESISYSAHLRLPSKLTREEISDIV 129
Query: 223 EDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
E I M L + +++ IG + +++G+ GE++R+ IA E++ +P +LF+DEP LDS S
Sbjct: 130 EATITDMGLEECSDRTIG-NWHLRGISGGEKKRLSIALEVLTKPSLLFLDEPTSGLDSAS 188
Query: 283 ALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNA 342
A ++ L+ +AS+G T++ +I+Q S EVF LFD + LLS G T++FGE + + F A
Sbjct: 189 AFFVVQILRNIASSGKTVVSSIHQPSGEVFALFDDLLLLSGGETVYFGEAESATKFFGEA 248
Query: 343 GFPCPIMQSPSDHFLRAINTDFDRIIA-MCKSWQDDHGDFS------SVN----MD---T 388
GFPCP ++PSDHFLR +N+DFD + A + +S + + FS + N +D T
Sbjct: 249 GFPCPSRRNPSDHFLRCVNSDFDNVTAALVESRRINDSSFSLHQLHETTNTLDPLDDIPT 308
Query: 389 AVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSAT---RVAVLTWRSLLI 445
A TL ++ S AAA I + G + K K S ++ +LT RS +
Sbjct: 309 AEIRTTLVRKFKCSLYAAASRARIQEIASIVGIVTERK-KGSQTNWWKQLRILTQRSFIN 367
Query: 446 MSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPA 505
MSR+ YYW+R+ + ++L++CVG++F +G + ++V++ A F + ++I G +
Sbjct: 368 MSRDLGYYWMRIAVYIVLSICVGSIFFNVGRNHTNVMSTAACGGFMAGFMTFMSIGGFQS 427
Query: 506 LMKEIKTYASEESNMHSGALVFLLGQXXXXXXXXXXXXXXXXXXXXXXVGLRDEFSLLMY 565
++E+K ++ E N H G V+ + V + S Y
Sbjct: 428 FIEEMKVFSRERLNGHYGVAVYTVSNLLSSLPFIILMCLSTSSITIYMVRFQSGGSHFFY 487
Query: 566 FVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTY 625
L+ + E M+++AS+ + ++ +M+LSAG+FR LP W Y
Sbjct: 488 NCLDLICAITTVESCMMMIASVVPNFLMGVMLGAGYIGIMVLSAGFFRFFPDLPMVFWRY 547
Query: 626 PISYVAFHTYSIKGLLENEYLGTSF 650
P+SY+ + ++++G +NE +G +
Sbjct: 548 PVSYINYGAWALQGAYKNEMIGVEY 572
|
|
| CGD|CAL0002254 orf19.3120 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 375 (137.1 bits), Expect = 2.7e-47, Sum P(2) = 2.7e-47
Identities = 99/300 (33%), Positives = 162/300 (54%)
Query: 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARM 166
W ++++T++ + D + S + G M IMGP+ GKSTLL +A R P S+ +
Sbjct: 8 WSNISLTLQNGKTILDDIYGSVSA----GEMLAIMGPSGCGKSTLLNVLAYRTSPRSSTL 63
Query: 167 YGEVFVNGAKSEMPYGSY--GFVERETTLIGSLTVREYLYYSALLQLPGFF-CQRKNVVE 223
G +F+N ++ + +VE+E +LIGSLTV E + YSA Q G +K +V
Sbjct: 64 EGGIFINNERATLNKIKQLSSYVEQEDSLIGSLTVSETVDYSA--QFAGIDKAHKKELVS 121
Query: 224 DAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
I ++ L A IG KG+ G++RRV IA +++ P +LF+DEP LDSV++
Sbjct: 122 KTIKSLGLEGQAMSKIGTPI-QKGISGGQKRRVSIASQIITSPSILFLDEPTSGLDSVAS 180
Query: 284 LLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNA 342
++ T+KK+A ++ +I+Q ST F LFD++ LS G T++ G +++F++
Sbjct: 181 REVISTIKKIAKRENMVIICSIHQPSTYTFELFDKVMFLSKGRTVYNGAVSNVVKYFNSI 240
Query: 343 GFPCPIMQSPSDHFLRAINTDF--DRIIA--MCKSWQDDHGDFSSVNMDTAVAIRTLEAT 398
G P +P+++ L INTDF D + + W GD V ++ ++ EAT
Sbjct: 241 GHTMPPYINPAEYVLDLINTDFQGDSSVLDDLVSKWNS--GDVHKVGTES---VQLTEAT 295
|
|
| UNIPROTKB|Q5A0X6 CaO19.10632 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 375 (137.1 bits), Expect = 2.7e-47, Sum P(2) = 2.7e-47
Identities = 99/300 (33%), Positives = 162/300 (54%)
Query: 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARM 166
W ++++T++ + D + S + G M IMGP+ GKSTLL +A R P S+ +
Sbjct: 8 WSNISLTLQNGKTILDDIYGSVSA----GEMLAIMGPSGCGKSTLLNVLAYRTSPRSSTL 63
Query: 167 YGEVFVNGAKSEMPYGSY--GFVERETTLIGSLTVREYLYYSALLQLPGFF-CQRKNVVE 223
G +F+N ++ + +VE+E +LIGSLTV E + YSA Q G +K +V
Sbjct: 64 EGGIFINNERATLNKIKQLSSYVEQEDSLIGSLTVSETVDYSA--QFAGIDKAHKKELVS 121
Query: 224 DAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
I ++ L A IG KG+ G++RRV IA +++ P +LF+DEP LDSV++
Sbjct: 122 KTIKSLGLEGQAMSKIGTPI-QKGISGGQKRRVSIASQIITSPSILFLDEPTSGLDSVAS 180
Query: 284 LLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNA 342
++ T+KK+A ++ +I+Q ST F LFD++ LS G T++ G +++F++
Sbjct: 181 REVISTIKKIAKRENMVIICSIHQPSTYTFELFDKVMFLSKGRTVYNGAVSNVVKYFNSI 240
Query: 343 GFPCPIMQSPSDHFLRAINTDF--DRIIA--MCKSWQDDHGDFSSVNMDTAVAIRTLEAT 398
G P +P+++ L INTDF D + + W GD V ++ ++ EAT
Sbjct: 241 GHTMPPYINPAEYVLDLINTDFQGDSSVLDDLVSKWNS--GDVHKVGTES---VQLTEAT 295
|
|
| UNIPROTKB|F1N3L2 ABCG5 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 161/559 (28%), Positives = 272/559 (48%)
Query: 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY 167
W D+ +++++ +++K + Y G + I+G + SGK+TLL A++GRL + +
Sbjct: 52 WWDIA---SRRQKWTRQILKDVSLYVESGQIMCILGSSGSGKTTLLDAMSGRLRRTGTLL 108
Query: 168 GEVFVNGAK--SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQL----PGFFCQRKNV 221
GEVFVNG + E + +V + TL+ +LTVRE L Y+ALL + FF Q+K
Sbjct: 109 GEVFVNGQELHREQFQDCFSYVLQSDTLLSNLTVRETLNYTALLAIRRGSQSFF-QKK-- 165
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
VE + +SLS A++LIG + + G+ GERRRV IA +L+ P V+ DEP LD +
Sbjct: 166 VEAVMTELSLSHVADQLIGNYSF-GGISHGERRRVSIAAQLLQDPKVMLFDEPTTGLDCM 224
Query: 282 SALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 341
+A ++V L +LA ++ TI+Q +E+F LFD+I +LS G +F G + L FS
Sbjct: 225 TANQIVVLLAELARRDRIVILTIHQPRSELFQLFDKIAILSCGELVFCGTPVEMLDFFSG 284
Query: 342 AGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQS 401
G+PCP +P D ++ + D +S + + + V M VA R A Y
Sbjct: 285 CGYPCPEHSNPFDFYMDLTSVD-------TQSKEREIETYRRVQM-IEVAYRE-SAMYHK 335
Query: 402 SADAAAVETMILRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCM 461
+ +A T L+ K PF K++ + +++ VL R + + R +RL +
Sbjct: 336 TMEAIE-RTKHLKTLPKI-PF-KTRDSPGALSKLCVLLRRVMRNLLRNKLAVTMRLTQNL 392
Query: 462 ILTLCVGTVFSGLGHSL--SSVVTRVAAIFVFVS---FNSLLNIAGVPALMKEIKTYASE 516
I+ L + LG + +V RV ++ FV + +LN + +++ + S+
Sbjct: 393 IMGLFIIFFLLRLGKDVLKGAVQDRVGLLYQFVGAMPYTGMLNAVTLFPVLRAVSDQESQ 452
Query: 517 ESNMHSGALVFLLGQXXXXXXXXXXXXXXXXXXXXXXVGLRDEFSLLMYFVLNFFMCLLV 576
+ H + LL + L E + YF + L+
Sbjct: 453 DGLYHKWQM--LLAYMLHVLPFSVTATLVCCSVCYWTLALYPEAARFAYFSVALLAPHLI 510
Query: 577 NEGLMLVVASIWKD--VYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHT 634
E L LV+ + ++ V S++ L+S+ V+M +G+ +RN P+ + Y F
Sbjct: 511 GEFLSLVLLGVIQNPNVVNSVVALLSIAGVLM-GSGF--VRNIQEMPIPFKILGYFTFQK 567
Query: 635 YSIKGLLENEYLGTSFPVG 653
Y + L+ NE+ G +F G
Sbjct: 568 YCSEILVVNEFYGQNFTCG 586
|
|
| UNIPROTKB|Q9H222 ABCG5 "ATP-binding cassette sub-family G member 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 159/562 (28%), Positives = 270/562 (48%)
Query: 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY 167
W D+T +++++ +++K + Y G + I+G + SGK+TLL A++GRL +
Sbjct: 54 WWDITSC---RQQWTRQILKDVSLYVESGQIMCILGSSGSGKTTLLDAMSGRLGRAGTFL 110
Query: 168 GEVFVNGA--KSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQL----PGFFCQRKNV 221
GEV+VNG + E + +V + TL+ SLTVRE L+Y+ALL + PG F Q+K
Sbjct: 111 GEVYVNGRALRREQFQDCFSYVLQSDTLLSSLTVRETLHYTALLAIRRGNPGSF-QKK-- 167
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
VE + +SLS A++LIG + + G+ GERRRV IA +L+ P V+ DEP LD +
Sbjct: 168 VEAVMAELSLSHVADRLIGNYS-LGGISTGERRRVSIAAQLLQDPKVMLFDEPTTGLDCM 226
Query: 282 SALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 341
+A ++V L +LA ++ TI+Q +E+F LFD+I +LS G +F G L F++
Sbjct: 227 TANQIVVLLVELARRNRIVVLTIHQPRSELFQLFDKIAILSFGELIFCGTPAEMLDFFND 286
Query: 342 AGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQS 401
G+PCP +P D ++ D + K + ++T+ ++ +E+ Y+
Sbjct: 287 CGYPCPEHSNPFDFYM-----DLTSVDTQSKERE----------IETSKRVQMIESAYKK 331
Query: 402 SADAAAVETMILRLTE-KEGPFLKSKGKASSA--TRVAVLTWRSLLIMSREWKYYWLRLI 458
SA I R+ K P + K K S +++ VL R + R RL+
Sbjct: 332 SAICHKTLKNIERMKHLKTLPMVPFKTKDSPGVFSKLGVLLRRVTRNLVRNKLAVITRLL 391
Query: 459 LCMILTL-CVGTVFSGLGHSLSSVVT-RVAAIFVFVS---FNSLLNIAGVPALMKEIKTY 513
+I+ L + V + L + RV ++ FV + +LN + +++ +
Sbjct: 392 QNLIMGLFLLFFVLRVRSNVLKGAIQDRVGLLYQFVGATPYTGMLNAVNLFPVLRAVSDQ 451
Query: 514 ASEESNMHSGALVFLLGQXXXXXXXXXXXXXXXXXXXXXXVGLRDEFSLLMYFVLNFFMC 573
S++ + +L +GL E + YF
Sbjct: 452 ESQDGLYQKWQM--MLAYALHVLPFSVVATMIFSSVCYWTLGLHPEVARFGYFSAALLAP 509
Query: 574 LLVNEGLMLVVASIWKD--VYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVA 631
L+ E L LV+ I ++ + S++ L+S+ V++ +G+ R +P P ISY
Sbjct: 510 HLIGEFLTLVLLGIVQNPNIVNSVVALLSIAGVLV-GSGFLRNIQEMPIPFKI--ISYFT 566
Query: 632 FHTYSIKGLLENEYLGTSFPVG 653
F Y + L+ NE+ G +F G
Sbjct: 567 FQKYCSEILVVNEFYGLNFTCG 588
|
|
| UNIPROTKB|E3LWM9 Cre-wht-1 "CRE-WHT-1 protein" [Caenorhabditis remanei (taxid:31234)] | Back alignment and assigned GO terms |
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Score = 470 (170.5 bits), Expect = 2.8e-44, P = 2.8e-44
Identities = 155/594 (26%), Positives = 283/594 (47%)
Query: 119 RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE 178
+R +++ + +G A G + IMG + +GK+TL+ + R + + G + ++G ++
Sbjct: 59 KRQVKEILHNVSGMAESGKLLAIMGSSGAGKTTLMNVLTSRNLTNLDVQGSILIDGKRAN 118
Query: 179 M--PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC---QRKNVVEDAIHAMSLSD 233
FV++ +G++T RE+L + A L++ + +R+ V + M L
Sbjct: 119 KWKIREMSAFVQQHDMFVGTMTAREHLQFMARLRMGSEYYSEEERETRVNQVLTQMGLQK 178
Query: 234 YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
A+ +IG +KGL CGE++R+ A E++ P +LF DEP LD+ A ++ L++L
Sbjct: 179 CADTVIGIPNQLKGLSCGEKKRLAFASEILTCPKILFCDEPTSGLDAFMAGHVVQALRRL 238
Query: 294 ASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPS 353
A G T++ TI+Q S++V+ LF+ +CL++ G ++ G + F GFPCP +P+
Sbjct: 239 ADNGMTVIITIHQPSSQVYSLFNNVCLMACGRVIYLGPGDQAVPLFERCGFPCPAYYNPA 298
Query: 354 DHFLRAINT-DFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMI 412
DH +R + D DR +M K+ F S ++ +V ++++ A + ET
Sbjct: 299 DHLIRTLAVIDSDRATSM-KTISKIRQGFLSTDLGQSVLAIGNANKLRAASFATSSET-- 355
Query: 413 LRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFS 472
+EK F AS T+ L WRS L + R+ +RL+ +I L G VF
Sbjct: 356 ---SEKTKTFFNQDYNASFWTQFRALFWRSYLTVIRDPNLLSVRLLQIIITALITGLVFF 412
Query: 473 GLGHSLSSVVTRVAAIFVFV-SFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQ 531
+ +++++ +F + + N +L VP + E+ E +N + L +
Sbjct: 413 QTPVTPATIISVNGIMFNHIRNMNFMLQFPNVPVITAELPIVLRENANGVYRTSAYFLAK 472
Query: 532 XXXXXXXXXXXXXXXXXXXXXXVGLRDEFSLLMYFVLNFFMCLLVNEGLML--VVASIWK 589
GL F Y + L+ N + + VA+I+
Sbjct: 473 NIAELPQYIILPVLYNTIVYWLSGLYPNF--WNYCFASLVTILITNVAISISYAVATIFA 530
Query: 590 DVYWSILTLISVHVV-MMLSAGYFRIRNALPGP-VWTYPISY-------VAFHTY-SIKG 639
+ + +T++ + VV +M G+F +A+P W +SY +A + + SIK
Sbjct: 531 NTDVA-MTVLPIFVVPIMAFGGFFITFDAIPSYFTWLSSLSYFKYGYEALAINEWESIKV 589
Query: 640 LLE--NEYLGTSFPV-GQVRTISGYQALQSAYDISSKSNSKWGNLLVLFLMAIG 690
+ E N + T+F + G R +GY+ L+S D S+ + K ++ +LF+M IG
Sbjct: 590 IPECFNSSV-TAFALNGCPR--NGYEVLESI-DFSA--SHKIFDIAILFVMFIG 637
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9ZUU9 | AB3G_ARATH | No assigned EC number | 0.8106 | 0.9944 | 0.9849 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | AT2G28070 | ABC transporter family protein; ABC transporter family protein; FUNCTIONS IN- ATPase activity, coupled to transmembrane movement of substances; LOCATED IN- plasma membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- ATPase, AAA+ type, core (InterPro-IPR003593), ABC transporter-like (InterPro-IPR003439), ABC-2 type transporter (InterPro-IPR013525); BEST Arabidopsis thaliana protein match is- WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11); ATPase, coupled to transmembrane movement of substances / fatty acid transporter (TAIR-AT1G178 [...] (730 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 723 | |||
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 4e-76 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-74 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 9e-50 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 7e-49 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 1e-47 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-46 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 4e-42 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 4e-36 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 3e-31 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-26 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 6e-24 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-23 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 6e-23 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 7e-23 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 9e-23 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 3e-21 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-21 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 6e-21 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 7e-21 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 9e-21 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-20 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 4e-20 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-19 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 9e-19 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-18 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-18 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-18 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-18 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-18 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 3e-18 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 6e-18 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-17 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-17 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-17 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 4e-17 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 4e-17 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-16 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-16 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-16 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-16 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 7e-16 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 8e-16 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 9e-16 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-15 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-15 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-15 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-15 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-15 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-15 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-15 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-15 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 6e-15 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 7e-15 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-14 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-14 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-14 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 4e-14 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 6e-14 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 7e-14 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 8e-14 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 8e-14 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-13 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-13 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-13 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-13 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-13 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 4e-13 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 5e-13 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 7e-13 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 8e-13 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 8e-13 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 9e-13 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 9e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-12 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-12 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-12 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-12 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-12 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 4e-12 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 4e-12 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 6e-12 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 7e-12 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 7e-12 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 9e-12 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 9e-12 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 9e-12 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-11 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-11 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-11 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-11 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 5e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 5e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 6e-11 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 9e-11 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-10 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-10 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-10 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-10 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-10 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 4e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-10 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 5e-10 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-10 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 5e-10 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 7e-10 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 7e-10 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 8e-10 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 8e-10 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 9e-10 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-09 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-09 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-09 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-09 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-09 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-09 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-09 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-09 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-09 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 6e-09 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 6e-09 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 7e-09 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 7e-09 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 9e-09 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-08 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-08 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-08 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-08 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-08 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-08 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-08 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 3e-08 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 5e-08 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 6e-08 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 7e-08 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 7e-08 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 7e-08 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 7e-08 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 9e-08 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 9e-08 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-07 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-07 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-07 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-07 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-07 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 5e-07 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 6e-07 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 6e-07 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 7e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 7e-07 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 8e-07 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 8e-07 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 8e-07 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-06 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 1e-06 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-06 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-06 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-06 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-06 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-06 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-06 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-06 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 5e-06 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 6e-06 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 6e-06 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 7e-06 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 7e-06 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 8e-06 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 8e-06 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 8e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 8e-06 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 8e-06 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 8e-06 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 9e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 9e-06 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 9e-06 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 1e-05 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-05 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-05 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-05 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-05 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-05 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-05 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-05 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-05 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-05 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-05 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-05 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-05 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-05 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-05 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 3e-05 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-05 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 4e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 5e-05 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 5e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 5e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 6e-05 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 7e-05 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 7e-05 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 8e-05 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 9e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-04 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-04 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-04 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-04 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-04 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-04 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 2e-04 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 3e-04 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-04 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-04 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 3e-04 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 3e-04 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 3e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-04 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 4e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-04 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 5e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 6e-04 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 8e-04 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 8e-04 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 0.001 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 0.001 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 0.001 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 0.001 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 0.001 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 0.001 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 0.001 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.002 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 0.002 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 0.002 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 0.002 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 0.002 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 0.002 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 0.002 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 0.002 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 0.002 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 0.003 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.003 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.003 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 0.003 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 0.004 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 0.004 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 0.004 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 0.004 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 0.004 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 256 bits (657), Expect = 4e-76
Identities = 153/618 (24%), Positives = 281/618 (45%), Gaps = 65/618 (10%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG--- 174
+ R ++K+ +G A PG + +MG + +GK+TL+ A+A R P + G V +NG
Sbjct: 33 RERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPI 92
Query: 175 AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSLS 232
EM S +V+++ I +LTVRE+L + A L++P +++ V++ + A+ L
Sbjct: 93 DAKEMRAIS-AYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLR 151
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
AN IG +KGL GER+R+ A EL+ P +LF DEP LDS A ++ LK
Sbjct: 152 KCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKG 211
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSP 352
LA G T++ TI+Q S+E+F LFD+I L++ G + G + FS+ G PCP +P
Sbjct: 212 LAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNP 271
Query: 353 SDHFLRAI-------NTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADA 405
+D +++ + N +RI +C S+ S + D V
Sbjct: 272 ADFYVQVLAVIPGSENESRERIEKICDSFAV-----SDIGRDMLVNTNLWSGKAGGLVKD 326
Query: 406 AAVETMILRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTL 465
+ AS T+ L RS L + R+ +RLI M+ +
Sbjct: 327 SENME-------------GIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAI 373
Query: 466 CVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIAGV--------PALMKEIKTYASEE 517
+G ++ G G + V A+F+F++ + N+ V P ++E ++
Sbjct: 374 LIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRV 433
Query: 518 SNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVN 577
S + L + ++ +P ++ + + Y+++GLR + + F+ + V
Sbjct: 434 SA-------YFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVA 486
Query: 578 EGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSI 637
+++ + ++ + +L G+F +++ PV+ +SY+++ Y
Sbjct: 487 TSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSI--PVYFKWLSYLSWFRYGN 544
Query: 638 KGLLENEYLGTSFPVGQVRTISGYQALQSAYDISSK---------SNSK-WGNLLVLFLM 687
+GLL N++ V I A + SS N+ + +L+ L ++
Sbjct: 545 EGLLINQW-------SDVDNIECTSANTTGPCPSSGEVILETLSFRNADLYLDLIGLVIL 597
Query: 688 AIGYRLLLFVLLYLRVKK 705
+RLL + L +R+++
Sbjct: 598 IFFFRLLAYFALRIRIRR 615
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 238 bits (610), Expect = 2e-74
Identities = 87/231 (37%), Positives = 129/231 (55%), Gaps = 40/231 (17%)
Query: 103 GASVVWKDLTVTIKGKR-RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161
G ++ +++LTVT+K + +++K+ +G A PG +T IMGP+ +GKSTLL A+AGR
Sbjct: 1 GVTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR- 59
Query: 162 HSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK 219
+ GEV +NG + G+V ++ L +LTVRE L ++A L
Sbjct: 60 TGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL---------- 109
Query: 220 NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
+GL GER+RV IA ELV P +LF+DEP LD
Sbjct: 110 --------------------------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143
Query: 280 SVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
S SAL +M L++LA TG T++ +I+Q S+E+F LFD++ LLS G ++FG
Sbjct: 144 SSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 9e-50
Identities = 83/228 (36%), Positives = 127/228 (55%), Gaps = 12/228 (5%)
Query: 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY 167
W D+ + K +Y+ +++ + + G + I+G + SGK+TLL AI+GR+
Sbjct: 6 WWDVGLKAKNWNKYA-RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTS 64
Query: 168 GEVFVNGAKS---EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVV 222
G++ NG + +V ++ L+ LTVRE L Y+A+L+LP RK V
Sbjct: 65 GQILFNGQPRKPDQFQK-CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRV 123
Query: 223 EDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
ED + L D A IG +KG+ GERRRV IA +L+ P VL +DEP LDS +
Sbjct: 124 ED----VLLRDLALTRIG-GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFT 178
Query: 283 ALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
AL ++ TL +LA ++ TI+Q +++F LFDRI LLS+G ++ G
Sbjct: 179 ALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 7e-49
Identities = 166/632 (26%), Positives = 286/632 (45%), Gaps = 70/632 (11%)
Query: 99 RKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158
++I G D T I+ + ++ G A PG + ++GP+ SGKSTLL A+AG
Sbjct: 62 KRILGHKPKISDETRQIQER-----TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116
Query: 159 RLPHSARMYGEVFVNGAKSEMP-YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ 217
R+ G + N K GFV ++ L LTVRE L + +LL+LP +
Sbjct: 117 RI-QGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTK 175
Query: 218 RKN--VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPL 275
++ V E I + L+ N +IG + +++G+ GER+RV IA E+++ P +L +DEP
Sbjct: 176 QEKILVAESVISELGLTKCENTIIG-NSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 234
Query: 276 YHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335
LD+ +A +++TL LA G T++ +++Q S+ V+ +FD + +LS G LFFG+
Sbjct: 235 SGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDA 294
Query: 336 LQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTL 395
+ +F + GF +P+D L N +C++ + +V + TL
Sbjct: 295 MAYFESVGFSPSFPMNPADFLLDLAN-------GVCQTDGVSEREKPNVKQSLVASYNTL 347
Query: 396 EATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSATRVAVLTWRSLL--IMSREWK-- 451
A AA+E S + S+ R+++ TW + ++ R K
Sbjct: 348 LAPKVK----AAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKER 403
Query: 452 ----YYWLRLILCMILTLCVGTVFSGL--GHS-LSSVVTRVAAIF-------VFVSFNSL 497
+ LR + + + +GL HS V R+ +F VF SFNS+
Sbjct: 404 KHESFNTLR-----VFQVIAAALLAGLMWWHSDFRDVQDRLGLLFFISIFWGVFPSFNSV 458
Query: 498 LNIAGVPAL-MKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGL 556
A+ +KE S M++ + F + +++ +P ++ V Y++ GL
Sbjct: 459 FVFPQERAIFVKE------RASGMYTLSSYF-MARIVGDLPMELILPTIFLTVTYWMAGL 511
Query: 557 RDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRN 616
+ E + +L +LV++GL L + + D + T+++V ++ + G F +
Sbjct: 512 KPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKAS-TIVTVTMLAFVLTGGFYVHK 570
Query: 617 ALPGPVWTYPISYVAFHTYSIKGLLENEY---------LGTSFPVGQVRTISGYQALQSA 667
W I Y++ YS + L+ +Y LG S P G R + A
Sbjct: 571 LPSCMAW---IKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVA 627
Query: 668 YDISSKSNSKWGNLLVLFLMAIGYRLLLFVLL 699
IS ++ VL M +GYRLL ++ L
Sbjct: 628 GQISP-----ATSVSVLIFMFVGYRLLAYLAL 654
|
Length = 659 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 1e-47
Identities = 142/563 (25%), Positives = 246/563 (43%), Gaps = 61/563 (10%)
Query: 108 WKDLTVTI---KGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA 164
W++LT + K KR + V +G+ PGT+T +MG + +GK+TLL +A R+
Sbjct: 762 WRNLTYEVKIKKEKRVILNNV----DGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGV 817
Query: 165 RMYGEVFVNGAKSEMPYG-SYGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNV 221
G+ VNG + + S G+V+++ + + TVRE L +SA L+ P ++
Sbjct: 818 ITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEY 877
Query: 222 VEDAIHAMSLSDYANKLIG--GHCYMKGLPCGERRRVRIARELVMRPHVL-FIDEPLYHL 278
VE+ I + + YA+ ++G G +GL +R+R+ I ELV +P +L F+DEP L
Sbjct: 878 VEEVIKLLEMESYADAVVGVPG----EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGL 933
Query: 279 DSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG-NTLFFGE------ 331
DS +A + ++KLA G +L TI+Q S +F FDR+ LL G T++FG+
Sbjct: 934 DSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSH 993
Query: 332 TLACLQHFSNAGFP-CPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAV 390
T+ + +F G P CP +P++ L I + N D
Sbjct: 994 TI--INYFEKHGAPKCPEDANPAEWMLEVIGA----------------APGAHANQDYHE 1035
Query: 391 AIRTLEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREW 450
R + +E + + + P SK AS + ++ WR+ R
Sbjct: 1036 VWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTP 1095
Query: 451 KYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEI 510
Y + + L + L +G F +G SL + ++ A+F+ + L +P + +
Sbjct: 1096 DYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQR 1155
Query: 511 KTYASEE--SNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFS------- 561
Y E S S L F+ Q+ IP+ + ++Y+ VG S
Sbjct: 1156 DLYEVRERPSRTFS-WLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHE 1214
Query: 562 --LLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALP 619
+L + + F G M++ + D + +L+ + + G + +P
Sbjct: 1215 RGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLL--FTMCLSFCGVLAPPSRMP 1272
Query: 620 GP-VWTYPISYVAFHTYSIKGLL 641
G ++ Y S TY ++ LL
Sbjct: 1273 GFWIFMYRCSPF---TYLVQALL 1292
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 2e-46
Identities = 150/621 (24%), Positives = 248/621 (39%), Gaps = 63/621 (10%)
Query: 106 VVWKDLTVTIKGKRRYSD----KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161
+ K LT + +++ D ++K +G PG +TV++G SG STLL+ IA
Sbjct: 53 ALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTD 112
Query: 162 HSARMY-GEVFVNG-AKSEMPYGSYGFV----ERETTLIGSLTVREYLYYSALLQLPGFF 215
G + +G E+ G V E + LTV E L ++A + P
Sbjct: 113 GFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHF-PHLTVGETLDFAARCKTPQ-- 169
Query: 216 CQRKNVVEDAIHAMSLSDYANKLIG-GHCY--------MKGLPCGERRRVRIARELVMRP 266
R + V +A ++D G H ++G+ GER+RV IA +
Sbjct: 170 -NRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGA 228
Query: 267 HVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGN 325
+ D LDS +AL + LK A+ T L I Q S + + LFD++ +L G
Sbjct: 229 KIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGY 288
Query: 326 TLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVN 385
++FG Q+F GF CP Q+ +D FL ++ + +R I
Sbjct: 289 QIYFGPADKAKQYFEKMGFKCPDRQTTAD-FLTSLTSPAERQI-----KPGYEKKVPRTP 342
Query: 386 MDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSATRVA--------- 436
+ R Q + KE K S TR +
Sbjct: 343 QEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSM 402
Query: 437 ---VLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIF---V 490
R+ L M + + +I+ L + +VF L + S +R A+F +
Sbjct: 403 QVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAIL 462
Query: 491 FVSFNSLLNIA----GVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISS 546
F +F+SLL IA P + K + YA H A + ++S IPF + S+
Sbjct: 463 FNAFSSLLEIASMYEARPIVEKH-RKYAL----YHPSA--DAIASIISEIPFKIIESVVF 515
Query: 547 SLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMM 606
+++ YF+V R +++L F+C L L + ++ K + S + +++
Sbjct: 516 NIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTL--SEAMTPAAILLLA 573
Query: 607 LS--AGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQ-VRTISGYQA 663
LS G+ R ++ G W+ I YV Y+ + L+ NE+ G F Q V + GY
Sbjct: 574 LSIYTGFAIPRPSMLG--WSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDN 631
Query: 664 LQSAYDISSKSNSKWGNLLVL 684
L + + ++ G V
Sbjct: 632 LGVTNKVCTVVGAEPGQDYVD 652
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 4e-42
Identities = 80/232 (34%), Positives = 124/232 (53%), Gaps = 44/232 (18%)
Query: 103 GASVVWKDL--TVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160
G+ + WK+L TV +KG +R +++ + +GY PGT+T +MG + +GK+TLL +AGR
Sbjct: 1 GSVLTWKNLNYTVPVKGGKR---QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGR- 56
Query: 161 PHSARMYGEVFVNGAKSEMPYGSY-GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK 219
+ + GE+ +NG + + G+VE++ +LTVRE L +SALL
Sbjct: 57 KTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALL---------- 106
Query: 220 NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
+GL +R+R+ I EL +P +LF+DEP LD
Sbjct: 107 --------------------------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLD 140
Query: 280 SVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL-SNGNTLFFG 330
S +A ++ LKKLA +G +L TI+Q S +F FDR+ LL G T++FG
Sbjct: 141 SQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 4e-36
Identities = 64/243 (26%), Positives = 108/243 (44%), Gaps = 18/243 (7%)
Query: 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR 165
+ ++LT G + + + PG + ++GP +GK+TLL+ +AG L ++
Sbjct: 5 IEVRNLTKKYGGDKT----ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTS- 59
Query: 166 MYGEVFVNG----AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNV 221
GE+ V G + G+V +E +L LTVRE L + A L + +
Sbjct: 60 --GEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGL-SKEEAEER 116
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
+E+ + L D ANK + + L G ++R+ IA L+ P +L +DEP LD
Sbjct: 117 IEELLELFGLEDKANKKV------RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPE 170
Query: 282 SALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 341
S + L++LA G + E L DR+ +L++G + G + F
Sbjct: 171 SRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230
Query: 342 AGF 344
G
Sbjct: 231 KGV 233
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 3e-31
Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 36/230 (15%)
Query: 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR 165
+ W++++ T GK R ++K +G PG M +++G SG STLL+A+A R +
Sbjct: 4 LSWRNISFT-TGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVS 62
Query: 166 MYGEVFVNGAKS----EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNV 221
+ G++ NG E G +V E +LTVRE L ++ +
Sbjct: 63 VEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK----------- 111
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
G+ +++G+ GER+RV IA LV R VL D LDS
Sbjct: 112 -------------------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSS 152
Query: 282 SALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
+AL ++ ++ +A T ++ Q+S E++ LFD++ +L G +++G
Sbjct: 153 TALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 62/238 (26%), Positives = 109/238 (45%), Gaps = 25/238 (10%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMY 167
++LTV+ + V++ + G +T ++GP +GKSTLL+AI G L P S
Sbjct: 8 ENLTVSYGNRP-----VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS---- 58
Query: 168 GEVFVNG--AKSEMPYGSYGFVERETTLIGS--LTVREYLY---YSALLQLPGFFCQRKN 220
GE+ + G + G+V +++++ S +TV++ + Y + K
Sbjct: 59 GEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE 118
Query: 221 VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280
V++A+ + + D ++ IG L G+++RV +AR L P +L +DEP +D
Sbjct: 119 KVDEALERVGMEDLRDRQIGE------LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDV 172
Query: 281 VSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338
+ LK+L G T+L + V FDR+ L N + + G L
Sbjct: 173 AGQKEIYDLLKELRQEGKTVL-MVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLTE 228
|
Length = 254 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 6e-24
Identities = 55/211 (26%), Positives = 96/211 (45%), Gaps = 7/211 (3%)
Query: 437 VLTWRSLLIMSREWKY-YWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFN 495
L R L R+ RLI +++ L GTVF L S + R +F + FN
Sbjct: 5 ALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTS-LGGLNRPGLLFFSILFN 63
Query: 496 SLLNIAGV-PALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLV 554
+ ++ G+ P ++E E ++ ++L ++L +P L +I L+ YF+V
Sbjct: 64 AFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIVYFMV 123
Query: 555 GLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRI 614
GL L VL + L GL L +A++ + + + ++L +G+F
Sbjct: 124 GLPVSRFFLFLLVL--LLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLSGFFIP 181
Query: 615 RNALPGPVWTYPISYVAFHTYSIKGLLENEY 645
+++PG W I Y+ TY+I+ L NE+
Sbjct: 182 VDSMPG--WLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 99.1 bits (248), Expect = 1e-23
Identities = 68/232 (29%), Positives = 107/232 (46%), Gaps = 31/232 (13%)
Query: 109 KDLTVTIKGKRRYSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY 167
+DLTV Y V++ + PG I+GP +GKSTLL+AI G L ++
Sbjct: 3 EDLTV------SYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTS--- 53
Query: 168 GEVFVNGAKSEMPYGSYGFV-ERETTLIGS-LTVREYLYYSALLQLPGFF----CQRKNV 221
G + V G E G+V +R + ++VR+ + L G F K
Sbjct: 54 GSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRD-VVLMGLYGHKGLFRRLSKADKAK 112
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
V++A+ + LS+ A++ IG L G+++RV +AR LV P +L +DEP +D
Sbjct: 113 VDEALERVGLSELADRQIGE------LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPK 166
Query: 282 SALLMMVTLKKLASTGCTLLFT---INQSSTEVFGLFDRICLLSNGNTLFFG 330
+ + L++L G T+L + V FDR+ LL N + G
Sbjct: 167 TQEDIYELLRELRREGMTILVVTHDLGL----VLEYFDRVLLL-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 6e-23
Identities = 151/674 (22%), Positives = 288/674 (42%), Gaps = 87/674 (12%)
Query: 84 GSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMG 143
GS P LP AR IA +++ + I ++ ++K ++G P MT+++G
Sbjct: 146 GSRALPTLPN---AARNIAESALG----MLGINLAKKTKLTILKDASGIIKPSRMTLLLG 198
Query: 144 PAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MPYGSYGFVERETTLIGSLTVRE 201
P SGK+TLL A+AG+L S ++ GE+ NG + +P + ++ + +G +TV+E
Sbjct: 199 PPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKE 258
Query: 202 YLYYSALLQLPGF-------FCQR----------------KNVVEDAIHAMSLSDYANKL 238
L +SA Q G +R K + + + ++DY K+
Sbjct: 259 TLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKI 318
Query: 239 IG---------GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT 289
+G G ++G+ G+++RV +V LF+DE LDS + ++
Sbjct: 319 LGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKC 378
Query: 290 LKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPI 348
L+++ T T+L ++ Q + E F LFD I LLS G ++ G L+ F + GF CP
Sbjct: 379 LQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPE 438
Query: 349 MQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNM-DTAVAIRTLEATYQSSADAAA 407
+ +D FL+ + + D+ + W D + + +++ + A ++ Q + +
Sbjct: 439 RKGTAD-FLQEVTSKKDQE----QYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSV 493
Query: 408 VETMILRLTEKEGPFLKSKG-KAS------SATRVAVL--TW-RSLLIMSREWKYYWLRL 457
PF KS+ KA+ S ++ +L W + L+M R Y +
Sbjct: 494 -------------PFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKT 540
Query: 458 ILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFV-FVSFNSLLNI----AGVPALMKEIKT 512
+ +I+ TVF L + + A+++ + F+ ++N+ A + +++ +
Sbjct: 541 VQIIIVAAIASTVF--LRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPV 598
Query: 513 YASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFM 572
+ + + F L L IP + S+ ++ Y+ +G E S +L F+
Sbjct: 599 FYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFL 658
Query: 573 CLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALP-GPVWTYPISYVA 631
+ G+ ++AS+ + + + V +++ L G+ + +P W Y +S +
Sbjct: 659 IQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPL- 717
Query: 632 FHTYSIKGLLENEYLGTSF---PVGQVRTISGYQALQSAYDISSKSNSKWGNLLVLFLMA 688
+Y L NE + T G L +D+ + N W + L
Sbjct: 718 --SYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNI-FDVFTDKNWYWIGVGALLGFT 774
Query: 689 IGYRLLL-FVLLYL 701
I + +L L YL
Sbjct: 775 ILFNVLFTLALTYL 788
|
Length = 1470 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 7e-23
Identities = 60/212 (28%), Positives = 94/212 (44%), Gaps = 29/212 (13%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY------GFVE 188
G +T I+GP SGKSTLL+ +AG L + GEV ++G K +V
Sbjct: 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKS---GEVLLDG-KDIASLSPKELAKKLAYVP 82
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKN---VVEDAIHAMSLSDYANKLIGGHCYM 245
+ + LTV E + L F K +VE+A+ + L A++ +
Sbjct: 83 QSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV--DE-- 138
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFT- 303
L GER+RV IAR L +L +DEP HLD + ++ L+ L G T++
Sbjct: 139 --LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVL 196
Query: 304 --INQSSTEVFGLF-DRICLLSNGNTLFFGET 332
+N ++ + D + LL +G + G
Sbjct: 197 HDLNLAA-----RYADHLILLKDGKIVAQGTP 223
|
Length = 258 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 9e-23
Identities = 60/194 (30%), Positives = 92/194 (47%), Gaps = 18/194 (9%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G I+GP+ GKSTLLR IAG ++ GEV ++G P G+V +E L+
Sbjct: 28 KGEFVAILGPSGCGKSTLLRLIAGLEKPTS---GEVLLDGRPVTGPGPDIGYVFQEDALL 84
Query: 195 GSLTVREYLYYSALLQLPGFFC---QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251
LTV + + L L + + ++ + + L+ + +K Y L G
Sbjct: 85 PWLTVLD----NVALGLELRGKSKAEARERAKELLELVGLAGFEDK------YPHQLSGG 134
Query: 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTE 310
R+RV IAR L RP +L +DEP LD+++ + L +L T T+L + E
Sbjct: 135 MRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLL-VTHDVDE 193
Query: 311 VFGLFDRICLLSNG 324
L DR+ +LSN
Sbjct: 194 AVYLADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 99.2 bits (247), Expect = 3e-21
Identities = 83/323 (25%), Positives = 145/323 (44%), Gaps = 25/323 (7%)
Query: 32 YLRKPGSLRQPISFEDSPEWEDTDVEVRVEEGGDSINAATTPASPSLSKLNSGSLPSPPL 91
YL G + IS E + E E + + N A +S S
Sbjct: 787 YLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSS 846
Query: 92 PEGAAVARKIAGASVVWKDLTVTIKGKRRYSD---------------KVVKSSNGYALPG 136
E A G + + L ++ + D ++++ G PG
Sbjct: 847 LEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPG 906
Query: 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG--AKSEMPYGSYGFVERETTLI 194
+T +MG + +GK+TL+ +AGR + G++ ++G K E G+ E+
Sbjct: 907 VLTALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHS 965
Query: 195 GSLTVREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSLSDYANKLIG--GHCYMKGLPC 250
+TVRE L YSA L+LP ++ V++ + + L + + ++G G + GL
Sbjct: 966 PQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPG---VTGLST 1022
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310
+R+R+ IA ELV P ++F+DEP LD+ +A ++M T++ TG T++ TI+Q S +
Sbjct: 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1082
Query: 311 VFGLFDRICLLSNGNTLFFGETL 333
+F FD + L+ G + + L
Sbjct: 1083 IFEAFDELLLMKRGGQVIYSGPL 1105
|
Length = 1470 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 3e-21
Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 17/201 (8%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA--KSEMPY-GSYGFVERET 191
PG ++GP+ GK+TLLR IAG + GE+ ++G P + G V ++
Sbjct: 25 PGEFLALLGPSGCGKTTLLRLIAGLERPDS---GEILIDGRDVTGVPPERRNIGMVFQDY 81
Query: 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251
L LTV E + + L + + V + + + L N+ L G
Sbjct: 82 ALFPHLTVAENIAF-GLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHE------LSGG 134
Query: 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLF-TINQSST 309
+++RV +AR L P +L +DEPL LD+ + LK+L G T ++ T +Q
Sbjct: 135 QQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-- 192
Query: 310 EVFGLFDRICLLSNGNTLFFG 330
E L DRI +++ G + G
Sbjct: 193 EALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 6e-21
Identities = 60/211 (28%), Positives = 88/211 (41%), Gaps = 47/211 (22%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYGSYGFVER---- 189
G +I+GP SGKSTLLR + G L P S GEV V+G E
Sbjct: 26 KGEFVLIVGPNGSGKSTLLRLLNGLLGPTS----GEVLVDG----KDLTKLSLKELRRKV 77
Query: 190 -------ETTLIGSLTVREYLYYSAL-LQLPGFFCQRKNVVEDAIHAMSLSDYANKLI-- 239
+ G TV E + + L LP + + VE+A+ + L ++
Sbjct: 78 GLVFQNPDDQFFGP-TVEEEVAFGLENLGLPEE--EIEERVEEALELVGLEGLRDRSPFT 134
Query: 240 --GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTG 297
GG +++RV IA L M P +L +DEP LD ++ LKKL + G
Sbjct: 135 LSGG----------QKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEG 184
Query: 298 CTLLFTINQSST----EVFGLFDRICLLSNG 324
T++ T + L DR+ +L +G
Sbjct: 185 KTIII-----VTHDLDLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 7e-21
Identities = 59/190 (31%), Positives = 90/190 (47%), Gaps = 12/190 (6%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G ++GP+ GKSTLLR IAG ++ GEV V+G P G+V ++ L+
Sbjct: 29 EGEFVALVGPSGCGKSTLLRIIAGLERPTS---GEVLVDGEPVTGPGPDRGYVFQQDALL 85
Query: 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254
LTV + + LQ + + E+ + + LS + N Y L G R+
Sbjct: 86 PWLTVLDNVALGLELQGVPK-AEARERAEELLELVGLSGFENA------YPHQLSGGMRQ 138
Query: 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTEVFG 313
RV +AR L + P VL +DEP LD+++ + L + TG T+L + E
Sbjct: 139 RVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLL-VTHDIDEAVF 197
Query: 314 LFDRICLLSN 323
L DR+ +LS
Sbjct: 198 LADRVVVLSA 207
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 9e-21
Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 34/207 (16%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG----AKSEMPYGSY-----G 185
G I+GP+ SGKSTLL + G ++ GEV V+G SE ++ G
Sbjct: 29 KGEFVAIVGPSGSGKSTLLNILGGLDRPTS---GEVRVDGTDISKLSEKELAAFRRRHIG 85
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFC-----QRKNVVEDAIHAMSLSDYANKLIG 240
FV + L+ LT E + +LP +R+ E+ + + L D N
Sbjct: 86 FVFQSFNLLPDLTALENV------ELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPS 139
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCT 299
+ G G+++RV IAR L P ++ DEP +LDS + +M L++L G T
Sbjct: 140 ---ELSG---GQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTT 193
Query: 300 LLF-TINQSSTEVFGLFDRICLLSNGN 325
++ T + E+ DRI L +G
Sbjct: 194 IVVVTHDP---ELAEYADRIIELRDGK 217
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 2e-20
Identities = 49/213 (23%), Positives = 84/213 (39%), Gaps = 57/213 (26%)
Query: 112 TVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF 171
+ R + + + G + ++GP SGKSTLLRAIAG L ++ GE+
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTS---GEIL 57
Query: 172 VNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSL 231
++G ++ + +R + Y + QL G
Sbjct: 58 IDG--------------KDIAKLPLEELRRRIGY--VPQLSG------------------ 83
Query: 232 SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK 291
G+R+RV +AR L++ P +L +DEP LD S ++ L+
Sbjct: 84 -------------------GQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLR 124
Query: 292 KLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
+LA G T++ + DR+ +L +G
Sbjct: 125 ELAEEGRTVIIVTHDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 89.1 bits (222), Expect = 4e-20
Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 21/230 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
++LT T K + V + G + ++G +GK+T L+ + G L ++ G
Sbjct: 4 RNLTKTYKKGTKP---AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTS---G 57
Query: 169 EVFVNGA--KSEMP--YGSYGFVERETTLIGSLTVREYLYYSALLQ-LPGFFCQRKNVVE 223
++NG +++ S G+ + L LTVRE+L + A L+ LP + K VE
Sbjct: 58 TAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS--EIKEEVE 115
Query: 224 DAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
+ + L+D ANK + L G +R++ +A L+ P VL +DEP LD S
Sbjct: 116 LLLRVLGLTDKANKRA------RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASR 169
Query: 284 LLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333
+ + ++ G +++ T S E L DRI ++S+G G
Sbjct: 170 RAIWDLILEVRK-GRSIILT-THSMDEAEALCDRIAIMSDGKLRCIGSPQ 217
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 85.2 bits (212), Expect = 4e-19
Identities = 58/229 (25%), Positives = 98/229 (42%), Gaps = 58/229 (25%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
++L+V G+ V+ + G + I+GP +GKSTLL+ +AG L S+ G
Sbjct: 3 ENLSVGYGGRT-----VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSS---G 54
Query: 169 EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA 228
E+ ++G + SL+ +E L + + Q A+
Sbjct: 55 EILLDG-----------------KDLASLSPKE------LARKIAYVPQ-------ALEL 84
Query: 229 MSLSDYANKLIG---GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285
+ L+ A++ G GER+RV +AR L P +L +DEP HLD +
Sbjct: 85 LGLAHLADRPFNELSG---------GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIE 135
Query: 286 MMVTLKKLA-STGCTLLFT---INQSSTEVFGLFDRICLLSNGNTLFFG 330
++ L++LA G T++ +N DR+ LL +G + G
Sbjct: 136 LLELLRRLARERGKTVVMVLHDLNL----AARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 84.0 bits (209), Expect = 9e-19
Identities = 53/223 (23%), Positives = 86/223 (38%), Gaps = 62/223 (27%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
++L+ K + + G + ++GP +GK+TL++ I G L + G
Sbjct: 4 RNLSKRYGKK-----TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDS---G 55
Query: 169 EVFVNG----AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVED 224
E+ V G + E G++ E +L +LTVRE L S
Sbjct: 56 EIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSG----------------- 98
Query: 225 AIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284
G ++R+ +A+ L+ P +L +DEP LD S
Sbjct: 99 --------------------------GMKQRLALAQALLHDPELLILDEPTSGLDPESRR 132
Query: 285 LMMVTLKKLASTGCTLLFTINQSS---TEVFGLFDRICLLSNG 324
L++L G T+L SS E L DR+ +L+NG
Sbjct: 133 EFWELLRELKKEGKTILL----SSHILEEAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 1e-18
Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 27/228 (11%)
Query: 113 VTIKG-KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF 171
+ ++ +RY K L M ++GP +GK+TL+R +A P S+ G +
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSS---GTIR 57
Query: 172 VNGAK-SEMP---YGSYGFVERETTLIGSLTVREYLYYSALLQ-LPGFFCQRKNVVEDAI 226
++G + P G++ +E + + TVRE+L Y A L+ +P + K V++ +
Sbjct: 58 IDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPS--KEVKARVDEVL 115
Query: 227 HAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 286
++L D A K IG L G RRRV IA+ LV P +L +DEP LD +
Sbjct: 116 ELVNLGDRAKKKIG------SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRF 169
Query: 287 MVTLKKLASTGCTLLFTINQSST----EVFGLFDRICLLSNGNTLFFG 330
L +L +L ST +V L +++ +L+ G +F G
Sbjct: 170 RNLLSELGEDRIVIL------STHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 2e-18
Identities = 53/197 (26%), Positives = 78/197 (39%), Gaps = 53/197 (26%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-------SEMPYGSYGFVE 188
G + ++GP+ SGKSTLLR IAG + G + ++G G V
Sbjct: 26 GEIVALLGPSGSGKSTLLRCIAGLEEPDS---GSILIDGEDLTDLEDELPPLRRRIGMVF 82
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248
++ L LTV E N+ GL
Sbjct: 83 QDFALFPHLTVLE------------------NIAL-----------------------GL 101
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQS 307
G+++RV +AR L M P VL +DEP LD ++ + LK L A G T++ +
Sbjct: 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL 161
Query: 308 STEVFGLFDRICLLSNG 324
E L DR+ +L +G
Sbjct: 162 D-EAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 2e-18
Identities = 60/244 (24%), Positives = 96/244 (39%), Gaps = 51/244 (20%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
G V K + + ++ G + I+GP+ SGKSTLLR I G L
Sbjct: 11 GGRTVLKGVDLDVR------------------RGEILAIIGPSGSGKSTLLRLIVGLLRP 52
Query: 163 SARMYGEVFVNGAK----SEMPYGS----YGFVERETTLIGSLTVRE----YLYYSALLQ 210
+ GEV ++G SE G + + L SLTV E L L
Sbjct: 53 DS---GEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLS 109
Query: 211 LPGFFCQRKNVVEDAIHAMSLSDYANK----LIGGHCYMKGLPCGERRRVRIARELVMRP 266
+ + +V + + A+ L + L GG M ++RV +AR L + P
Sbjct: 110 EE----EIREIVLEKLEAVGLRGAEDLYPAELSGG---M-------KKRVALARALALDP 155
Query: 267 HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326
+L DEP LD +++ ++ ++ L + F + DRI +L +G
Sbjct: 156 ELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKI 215
Query: 327 LFFG 330
+ G
Sbjct: 216 VAEG 219
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 3e-18
Identities = 66/227 (29%), Positives = 107/227 (47%), Gaps = 32/227 (14%)
Query: 119 RRYSD-----KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN 173
+R+ D + V + PG +T ++GP +GK+T LR +AG L A G V+
Sbjct: 9 KRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA---GFATVD 65
Query: 174 G---------AKSEMPYGSYGFVERETTLIGSLTVREYL-YYSALLQLPGFFCQRKNVVE 223
G A+ + GFV T L LT RE L Y++ L L G + +E
Sbjct: 66 GFDVVKEPAEARRRL-----GFVSDSTGLYDRLTARENLEYFAGLYGLKG--DELTARLE 118
Query: 224 DAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
+ + + + ++ +GG G R++V IAR LV P VL +DEP LD ++
Sbjct: 119 ELADRLGMEELLDRRVGG------FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMAT 172
Query: 284 LLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
+ +++L + G +LF+ + EV L DR+ +L G ++ G
Sbjct: 173 RALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 3e-18
Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 26/192 (13%)
Query: 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYG 182
+V+K N A G + ++G +GKSTLL + G L P S G V ++G + Y
Sbjct: 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQS----GAVLIDGE--PLDYS 59
Query: 183 SYGFVERETTL----------IGSLTVREYLYYSAL-LQLPGFFCQRKNVVEDAIHAMSL 231
G +ER + + + V + + + L L L +R V +A+ A+
Sbjct: 60 RKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVER--RVREALTAVGA 117
Query: 232 SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK 291
S + HC L GE++RV IA + MRP VL +DEP LD M+ L+
Sbjct: 118 SGLRERPT--HC----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILR 171
Query: 292 KLASTGCTLLFT 303
+L + G T++ +
Sbjct: 172 RLRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 3e-18
Identities = 65/231 (28%), Positives = 109/231 (47%), Gaps = 23/231 (9%)
Query: 112 TVTIKG-KRRYSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGE 169
+ +K ++ + V+K N G V++GP+ GKSTLLR IAG ++ GE
Sbjct: 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS---GE 59
Query: 170 VFVNGAK-SEMP--YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF---CQRKNVVE 223
+ ++G +++P V + L +TV E + + L+L G ++ V+
Sbjct: 60 ILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFG--LKLRGVPKAEIDKR--VK 115
Query: 224 DAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
+ + L N+ L G+R+RV +AR LV +P V +DEPL +LD+
Sbjct: 116 EVAKLLGLEHLLNRKP------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLR 169
Query: 284 LLMMVTLKKL-ASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333
+LM +KKL G T ++ + E L DRI ++++G G L
Sbjct: 170 VLMRSEIKKLHERLGTTTIY-VTHDQVEAMTLADRIVVMNDGRIQQVGTPL 219
|
Length = 338 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 6e-18
Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 21/207 (10%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG--------SYGF 186
G +++GP SGKSTLL+ + G L + GEV V+G + F
Sbjct: 29 KGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVF 85
Query: 187 VERETTLIGSLTVREYLYYSAL-LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
+ L G TV + + + L LP + + V +A+ + L + ++
Sbjct: 86 QNPDDQLFGP-TVEDEVAFGLENLGLPR--EEIEERVAEALELVGLEELLDRPP------ 136
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 305
L G+++RV IA L M P +L +DEP LD ++ LKKL G + +
Sbjct: 137 FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVT 196
Query: 306 QSSTEVFGLFDRICLLSNGNTLFFGET 332
V DR+ +L +G L G+
Sbjct: 197 HDLELVLEYADRVVVLDDGKILADGDP 223
|
Length = 235 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 1e-17
Identities = 63/245 (25%), Positives = 112/245 (45%), Gaps = 44/245 (17%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
++L+ T + K +K + PG ++GP+ +GKSTLLR + G + ++ G
Sbjct: 4 ENLSKTYPNGK----KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTS---G 56
Query: 169 EVFVNG-------------AKSEMPYGSYGFVERETTLIGSLTVRE-----YLYYSALLQ 210
V ++G + ++ G + ++ LI L+V E L + +
Sbjct: 57 SVLIDGTDINKLKGKALRQLRRQI-----GMIFQQFNLIERLSVLENVLSGRLGRRSTWR 111
Query: 211 -LPGFFCQRKNVVEDAIHAMS---LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRP 266
L G F K + A+ A+ L D A + + G G+++RV IAR L+ +P
Sbjct: 112 SLFGLF--PKEEKQRALAALERVGLLDKAYQRAD---QLSG---GQQQRVAIARALMQQP 163
Query: 267 HVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGN 325
++ DEP+ LD S+ +M LK++ G T++ +++Q DRI L +G
Sbjct: 164 KLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDL-AREYADRIVGLKDGR 222
Query: 326 TLFFG 330
+F G
Sbjct: 223 IVFDG 227
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 2e-17
Identities = 63/220 (28%), Positives = 101/220 (45%), Gaps = 21/220 (9%)
Query: 119 RRYSDKV--VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNG- 174
+ Y KV V+ + A G +T ++G +GK+TLLR IA L P S G+V ++G
Sbjct: 9 KSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDS----GKVTIDGV 64
Query: 175 ---AKSEMPYGSYGFVERETTLIGSLTVREYL-YYSALLQLPGFFCQRKNVVEDAIHAMS 230
G + E L LT RE L Y++ L L + K + + +
Sbjct: 65 DTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRK--EIKARIAELSKRLQ 122
Query: 231 LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290
L +Y ++ +G G +++V IAR LV P +L +DEP LD + +
Sbjct: 123 LLEYLDRRVGE------FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFI 176
Query: 291 KKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
K+L + G ++F+ + EV L DR+ +L G + G
Sbjct: 177 KQLKNEGRAVIFS-SHIMQEVEALCDRVIVLHKGEVVLEG 215
|
Length = 245 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 2e-17
Identities = 57/211 (27%), Positives = 94/211 (44%), Gaps = 27/211 (12%)
Query: 132 YALPGTMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGA-------KSEMPYG 182
+ L +T I G + +GKSTLLR IAG + G + +NG K +P
Sbjct: 19 FDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDG-----GTIVLNGTVLFDSRKKINLPPQ 73
Query: 183 --SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG 240
G V ++ L L VRE L + + + + V++ + + L N+
Sbjct: 74 QRKIGLVFQQYALFPHLNVRENLAFGLKRKRNR---EDRISVDELLDLLGLDHLLNR--- 127
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCT 299
Y L GE++RV +AR L +P +L +DEP LD L ++ LK++
Sbjct: 128 ---YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIP 184
Query: 300 LLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
++F + +E L DRI ++ +G + G
Sbjct: 185 VIF-VTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 83.5 bits (206), Expect = 4e-17
Identities = 55/244 (22%), Positives = 95/244 (38%), Gaps = 32/244 (13%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
GA+ V DL++ I+ G + ++G + GK+TLLRAIAG
Sbjct: 16 GANTVLDDLSLEIE------------------AGELLALIGKSGCGKTTLLRAIAG-FVK 56
Query: 163 SARMYGEVFVNGAKSEM--PYG-SYGFVERETTLIGSLTVREYLYYSALLQ-LPGFFCQR 218
+A + G + + P+ + + L L V + + + Q +P
Sbjct: 57 AAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE 116
Query: 219 KNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 278
+ V DA+ + L D L G ++R+ IAR + + P VL +DEPL L
Sbjct: 117 R--VADALKLVGLGDA------AAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSAL 168
Query: 279 DSVSALLMMVTLKKLASTGCTL-LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337
D+ M + L L + + + L D+ ++ +G GE A
Sbjct: 169 DANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228
Query: 338 HFSN 341
++
Sbjct: 229 APAD 232
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 4e-17
Identities = 56/240 (23%), Positives = 100/240 (41%), Gaps = 42/240 (17%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
G V+ + + + G + I+G + SGKSTLLR I G L
Sbjct: 19 GDRVILDGVDLDVP------------------RGEILAILGGSGSGKSTLLRLILGLLRP 60
Query: 163 SARMYGEVFVNGAKSEMPYGS----------YGFVERETTLIGSLTVRE--YLYYSALLQ 210
GE+ ++G ++P S G + ++ L SLTV E +
Sbjct: 61 DK---GEILIDGE--DIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTK 115
Query: 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLF 270
LP ++++ + + M L + Y L G R+RV +AR + + P +LF
Sbjct: 116 LP------ESLIRE-LVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLF 168
Query: 271 IDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
+DEP LD +SA ++ +++L + + + + DR+ +L++G + G
Sbjct: 169 LDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEG 228
|
Length = 263 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 1e-16
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 18/214 (8%)
Query: 118 KRRYSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176
+R+ +P G++ ++GP+ SGKSTLLR IAG L G + +NG
Sbjct: 7 SKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG-LEQPDS--GRIRLNGQD 63
Query: 177 -SEMPYG--SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD 233
+ + GFV + L LTVR+ + + ++ + VE+ + + L
Sbjct: 64 ATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKAR-VEELLELVQLEG 122
Query: 234 YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
++ Y L G+R+RV +AR L + P VL +DEP LD+ + L+KL
Sbjct: 123 LGDR------YPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKL 176
Query: 294 AS--TGCTLLFTINQSSTEVFGLFDRICLLSNGN 325
T+ T +Q E + DRI ++SNG
Sbjct: 177 HDEVHVTTVFVTHDQE--EAMEVADRIVVMSNGK 208
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 78.6 bits (195), Expect = 2e-16
Identities = 51/212 (24%), Positives = 86/212 (40%), Gaps = 39/212 (18%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSYGFVER---- 189
PG + ++GP +GK+TL I+G L ++ G V +G + +P +
Sbjct: 25 PGEIHGLIGPNGAGKTTLFNLISGFLRPTS---GSVLFDGEDITGLP--PHEIARLGIGR 79
Query: 190 ---ETTLIGSLTVREYLYYSALLQLPGFFCQRKNV---------VEDAIHAMSLSDYANK 237
L LTV E + +A + + E+ + + L+D A++
Sbjct: 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADR 139
Query: 238 LIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTG 297
G L G++RR+ IAR L P +L +DEP L+ + +++L G
Sbjct: 140 PAGE------LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERG 193
Query: 298 CTLLFTINQSSTE-----VFGLFDRICLLSNG 324
T+L E V L DR+ +L G
Sbjct: 194 ITVLL------VEHDMDVVMSLADRVTVLDQG 219
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (194), Expect = 3e-16
Identities = 67/247 (27%), Positives = 110/247 (44%), Gaps = 44/247 (17%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGR-------------LPHSARMYGEVFVNGAKSEMPYG 182
G M ++GP+ SGKSTLLR ++G L + + G + + KS
Sbjct: 30 GEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSR---A 86
Query: 183 SYGFVERETTLIGSLTVREYLYYSALLQLP-------GFFCQRKNVVEDAIHAMSLSDYA 235
+ G++ ++ L+ L+V E + AL P F ++K A+ + + +A
Sbjct: 87 NTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFA 146
Query: 236 NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS 295
H + L G+++RV IAR L+ + V+ DEP+ LD SA ++M TL+ +
Sbjct: 147 ------HQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQ 200
Query: 296 T-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSD 354
G T++ T++Q +RI L G+ + G Q F N F D
Sbjct: 201 NDGITVVVTLHQVDY-ALRYCERIVALRQGHVFYDG----SSQQFDNERF---------D 246
Query: 355 HFLRAIN 361
H R+IN
Sbjct: 247 HLYRSIN 253
|
Length = 262 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 3e-16
Identities = 57/234 (24%), Positives = 106/234 (45%), Gaps = 32/234 (13%)
Query: 99 RKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158
K G D++ +++ G + ++GP +GK+T +R I G
Sbjct: 7 TKRFGRVTALDDISFSVE------------------KGEIFGLLGPNGAGKTTTIRMILG 48
Query: 159 RLPHSARMYGEVFVNGAK-SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF-FC 216
+ + GEV +G G++ E L + V + L Y A QL G
Sbjct: 49 IILPDS---GEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLA--QLKGLKKE 103
Query: 217 QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276
+ + +++ + + LS+YANK + + L G +++V+ ++ P +L +DEP
Sbjct: 104 EARRRIDEWLERLELSEYANKRV------EELSKGNQQKVQFIAAVIHDPELLILDEPFS 157
Query: 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
LD V+ L+ +++LA G T++ + +Q V L DR+ LL+ G + +G
Sbjct: 158 GLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 7e-16
Identities = 59/227 (25%), Positives = 100/227 (44%), Gaps = 34/227 (14%)
Query: 113 VTIKG-KRRYSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV 170
+ I+ + + D V + G ++GP+ GK+TLLR IAG S+ GE+
Sbjct: 6 LEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS---GEI 62
Query: 171 FVNGAKSEMPYGSYGFVERET-------TLIGSLTVREYLYYSALLQLPGFF--CQRKNV 221
++G +R L +TV E + + L++ + K
Sbjct: 63 LLDG----EDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKAR 116
Query: 222 VEDAIHAMSLSDYANKLI---GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 278
VE+A+ + L +A++ G G+++RV +AR LV P VL +DEPL L
Sbjct: 117 VEEALELVGLEGFADRKPHQLSG---------GQQQRVALARALVPEPKVLLLDEPLSAL 167
Query: 279 DSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNG 324
D+ M LK+L G T ++ + E + DRI ++++G
Sbjct: 168 DAKLREQMRKELKELQRELGITFVY-VTHDQEEALAMSDRIAVMNDG 213
|
Length = 352 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 8e-16
Identities = 64/217 (29%), Positives = 95/217 (43%), Gaps = 36/217 (16%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG---------------AKSEM 179
G M I+GP+ +GKSTLLR++ G + + GE+ NG M
Sbjct: 29 QGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGM 85
Query: 180 PYGSYGFVER----ETTLIGSLTVREYLYYSALLQLPGFFCQR-KNVVEDAIHAMSLSDY 234
+ + V R E L+G L Y S L G F + K DA+ + + D
Sbjct: 86 IFQQFNLVPRLSVLENVLLGRLG-----YTSTWRSLFGLFSKEDKAQALDALERVGILDK 140
Query: 235 ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294
A + + G G+++RV IAR LV +P ++ DEP+ LD SA +M LK +
Sbjct: 141 AYQRAS---TLSG---GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDIN 194
Query: 295 -STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
G T++ ++Q DRI L G +F G
Sbjct: 195 QEDGITVIVNLHQVDL-AKKYADRIIGLKAGRIVFDG 230
|
Length = 258 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 9e-16
Identities = 56/196 (28%), Positives = 94/196 (47%), Gaps = 18/196 (9%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG----AKSEMPYGSYGFVERE 190
G + ++GP +GK+T ++ + L ++ G V G + G V ++
Sbjct: 25 RGEIFGLLGPNGAGKTTTIKMLTTLLKPTS---GRATVAGHDVVREPREVRRRIGIVFQD 81
Query: 191 TTLIGSLTVREYLYYSALLQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249
++ LT E LY A L +PG +R+ +++ + + L + A++L+ G
Sbjct: 82 LSVDDELTGWENLYIHARLYGVPG--AERRERIDELLDFVGLLEAADRLV---KTYSG-- 134
Query: 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSS 308
G RRR+ IAR LV RP VLF+DEP LD + + ++KL G T+L T
Sbjct: 135 -GMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLT-THYM 192
Query: 309 TEVFGLFDRICLLSNG 324
E L DR+ ++ +G
Sbjct: 193 EEAEQLCDRVAIIDHG 208
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 1e-15
Identities = 58/191 (30%), Positives = 88/191 (46%), Gaps = 12/191 (6%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G + V++GP+ GK+TLL IAG + S G + +NG + E P G V + L+
Sbjct: 30 SGELVVVLGPSGCGKTTLLNLIAGFVTPSR---GSIQLNGRRIEGPGAERGVVFQNEALL 86
Query: 195 GSLTVREYLYYSALLQLPGFF-CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253
L V + + + LQL G QR+ + + + L +K Y+ L G R
Sbjct: 87 PWLNVIDNVAFG--LQLRGIEKAQRREIAHQMLALVGLEGAEHK------YIWQLSGGMR 138
Query: 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 313
+RV IAR L + P +L +DEP LD+++ M L L + I E
Sbjct: 139 QRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALF 198
Query: 314 LFDRICLLSNG 324
L R+ +LS G
Sbjct: 199 LATRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 1e-15
Identities = 70/235 (29%), Positives = 103/235 (43%), Gaps = 41/235 (17%)
Query: 99 RKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158
K G V +++ IK G ++GP+ GK+TLLR IAG
Sbjct: 7 SKFYGGFVALDGVSLDIK------------------EGEFFTLLGPSGCGKTTLLRLIAG 48
Query: 159 -RLPHSARMYGEVFVNGAKSEMPYGSY----GFVERETTLIGSLTVREYLYYS-ALLQLP 212
P S GE+ ++G K + V + L LTV E + + L +LP
Sbjct: 49 FETPTS----GEILLDG-KDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLP 103
Query: 213 GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFID 272
+ + V +A+ + L YAN+ L G+++RV IAR LV P VL +D
Sbjct: 104 KAEIKER--VAEALDLVQLEGYANR------KPSQLSGGQQQRVAIARALVNEPKVLLLD 155
Query: 273 EPLYHLDSVSALLMMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRICLLSNGN 325
EPL LD M + LK+L G T +F T +Q E + DRI +++ G
Sbjct: 156 EPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE--EALTMSDRIAVMNKGK 208
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 1e-15
Identities = 61/180 (33%), Positives = 92/180 (51%), Gaps = 23/180 (12%)
Query: 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGS----YGFV 187
A PG++T ++GP SGKSTLLR +AG L A G V + G + + V
Sbjct: 24 APPGSLTGLLGPNGSGKSTLLRLLAGALRPDA---GTVDLAGVDLHGLSRRARARRVALV 80
Query: 188 ERETTLIGSLTVREYLYYSALLQLP------GFFCQRKNVVEDAIHAMSLSDYANKLIGG 241
E+++ LTVR+ + AL ++P G VV+ A+ LS A++
Sbjct: 81 EQDSDTAVPLTVRDVV---ALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR---- 133
Query: 242 HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
M L GER+RV +AR L P +L +DEP HLD + L + +++LA+TG T++
Sbjct: 134 --DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVV 191
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 2e-15
Identities = 58/223 (26%), Positives = 97/223 (43%), Gaps = 23/223 (10%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
DLT T KR V+ + + G + +GP +GK+T ++ I G + + G
Sbjct: 4 NDLTKTYGKKR-----VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDS---G 55
Query: 169 EVFVNG---AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDA 225
E+ +G K+ G + +LT RE L A L G RK +++
Sbjct: 56 EITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARL--LGI---RKKRIDEV 110
Query: 226 IHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285
+ + L D A K + KG G ++R+ IA L+ P +L +DEP LD
Sbjct: 111 LDVVGLKDSAKKKV------KGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKE 164
Query: 286 MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328
+ + L G T+L + + S E+ + DRI +++ G +
Sbjct: 165 LRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 20/199 (10%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK----SEMPYGS--YGFVER 189
G + ++GP+ +GKSTLLR IAG L G + +NG S + GFV +
Sbjct: 28 GELVALLGPSGAGKSTLLRIIAG-LETPDA--GRIRLNGRVLFDVSNLAVRDRKVGFVFQ 84
Query: 190 ETTLIGSLTVREYLYYSALLQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248
L +TV + + + ++ + + VE+ + + L A++ Y L
Sbjct: 85 HYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADR------YPAQL 138
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDS-VSALLMMVTLKKLASTGCTLLF-TINQ 306
G+R+RV +AR L + P VL +DEP LD+ V L K G T +F T +Q
Sbjct: 139 SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ 198
Query: 307 SSTEVFGLFDRICLLSNGN 325
E L DR+ +L+ G
Sbjct: 199 E--EALELADRVVVLNQGR 215
|
Length = 345 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 2e-15
Identities = 61/232 (26%), Positives = 111/232 (47%), Gaps = 22/232 (9%)
Query: 120 RYSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-S 177
RY + K V N G V++GP+ SGK+T L+ I + ++ GE+ ++G S
Sbjct: 10 RYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTS---GEILIDGEDIS 66
Query: 178 EMP----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNV-VEDAIHAMSL- 231
++ G+V ++ L LTV E + + + +L G+ +R ++ + + L
Sbjct: 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENI--ATVPKLLGWDKERIKKRADELLDLVGLD 124
Query: 232 -SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290
S+YA++ Y L G+++RV +AR L P +L +DEP LD ++ + +
Sbjct: 125 PSEYADR------YPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEI 178
Query: 291 KKL-ASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 341
K+L G T++F + E L DRI ++ G + + L + +N
Sbjct: 179 KELQKELGKTIVF-VTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPAN 229
|
Length = 309 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 3e-15
Identities = 66/251 (26%), Positives = 108/251 (43%), Gaps = 38/251 (15%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
++L++ G + + + + G I+G + SGKSTL R +AG S+ G
Sbjct: 7 RNLSIVYGGGKFAF-HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS---G 62
Query: 169 EVFVNGAKSEMPYGSYGFVERETTLI-----GSL----TVREYLYYSALLQLPGFFCQRK 219
+ ++G P R ++ SL TV L S L+ G ++
Sbjct: 63 SILLDGKPLA-PKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL--SEPLRPHGLSKSQQ 119
Query: 220 NVVEDAIHAMSLS-----DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274
+ + + + L ++L GG +R+R+ IAR L+ P +L +DEP
Sbjct: 120 RI-AELLDQVGLPPSFLDRRPHELSGG----------QRQRIAIARALIPEPKLLILDEP 168
Query: 275 LYHLD-SVSALL--MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331
LD SV A + +++ LKK G T LF I+ V + DRI ++ NG + G
Sbjct: 169 TSALDVSVQAQILNLLLELKK--ERGLTYLF-ISHDLALVEHMCDRIAVMDNGQIVEIGP 225
Query: 332 TLACLQHFSNA 342
T L H S+
Sbjct: 226 TEELLSHPSHP 236
|
Length = 252 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 3e-15
Identities = 65/208 (31%), Positives = 93/208 (44%), Gaps = 27/208 (12%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNG------AKSEMPYGSYGFV 187
G + I+GP+ +GKSTLL IAG P S GE+ +NG +E P +
Sbjct: 24 AGEIVAILGPSGAGKSTLLNLIAGFETPAS----GEILINGVDHTASPPAERPVSM---L 76
Query: 188 ERETTLIGSLTVREY--LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
+E L LTV + L S L+L QR+ VE A + L+ + +L G
Sbjct: 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAE--QREK-VEAAAAQVGLAGFLKRLPG----- 128
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTI 304
L G+R+RV +AR LV +L +DEP LD M+ + +L TLL
Sbjct: 129 -ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVT 187
Query: 305 NQSSTEVFGLFDRICLLSNGNTLFFGET 332
+ + + DR+ L NG G T
Sbjct: 188 HHPE-DAARIADRVVFLDNGRIAAQGST 214
|
Length = 231 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 6e-15
Identities = 61/198 (30%), Positives = 94/198 (47%), Gaps = 25/198 (12%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNG------AKSEMPYGSYGFVE 188
G + IMGP+ +GKSTLL IAG + P S G + VN A + P S F
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPAS----GSIKVNDQSHTGLAPYQRPV-SMLF-- 76
Query: 189 RETTLIGSLTVREYLYYSALLQLPGF--FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246
+E L LTVR+ + L PG +++ V DA + ++DY ++L
Sbjct: 77 QENNLFAHLTVRQNI---GLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQ----- 128
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 306
L G+R+RV +AR LV +L +DEP LD + M+ +K+L S L +
Sbjct: 129 -LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTH 187
Query: 307 SSTEVFGLFDRICLLSNG 324
++ + +I ++S G
Sbjct: 188 HLSDARAIASQIAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 7e-15
Identities = 64/250 (25%), Positives = 108/250 (43%), Gaps = 32/250 (12%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMY--GEVFVN 173
K+ K V ++ G + VIMG + SGKST +R + RL P + +++ GE +
Sbjct: 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRML-NRLIEPTAGQIFIDGENIMK 59
Query: 174 GAKSEMPYGS---YGFVERETTLIGSLTVREYLYYS-ALLQLPGFFCQRKNVVEDAIHAM 229
+ E+ G V ++ L +T+ + LL P +RK + + +
Sbjct: 60 QSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQ--ERKEKALELLKLV 117
Query: 230 SLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT 289
L +Y H Y L G ++RV +AR L P +L +DE LD + M
Sbjct: 118 GLEEYE------HRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDE 171
Query: 290 LKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPI 348
LKKL +T T++F I E + DRI ++ G + G P I
Sbjct: 172 LKKLQATLQKTIVF-ITHDLDEAIRIGDRIVIMKAGEIV-------------QVGTPDEI 217
Query: 349 MQSPSDHFLR 358
+++P++ ++
Sbjct: 218 LRNPANEYVE 227
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 1e-14
Identities = 58/210 (27%), Positives = 91/210 (43%), Gaps = 41/210 (19%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG----AKSEMPYGSY-----G 185
G I+GP+ SGKSTLL + G ++ GEV +NG SE G
Sbjct: 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKPTS---GEVLINGKDLTKLSEKELAKLRRKKIG 86
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS----LSD-----YAN 236
FV + L+ LTV E + L+ + + A + L D +
Sbjct: 87 FVFQNFNLLPDLTVLENVELPLLIAG-----KSAGRRKRAAEELLEVLGLEDRLLKKKPS 141
Query: 237 KLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-S 295
+L GG +++RV IAR L+ P ++ DEP +LDS +A ++ L++L
Sbjct: 142 ELSGG----------QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE 191
Query: 296 TGCTLLF-TINQSSTEVFGLFDRICLLSNG 324
G T++ T + E+ DR+ L +G
Sbjct: 192 RGKTIIMVTHDP---ELAKYADRVIELKDG 218
|
Length = 226 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 1e-14
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 20/131 (15%)
Query: 150 STLLRAIAGRLPHSARMYGEVFVNG-AKSEMPYGSY-----GFVERETTLIGSLTVREYL 203
STLL+ I G L ++ G + ++G + + G V ++ L LTVRE L
Sbjct: 1 STLLKLITGLLQPTS---GTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263
++ + + E+A+ + L D+ ++ + L G+++RV IAR L+
Sbjct: 58 FFGLRDK------EADARAEEALERVGLPDFLDRE-----PVGTLSGGQKQRVAIARALL 106
Query: 264 MRPHVLFIDEP 274
+P +L +DEP
Sbjct: 107 KKPKLLLLDEP 117
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 4e-14
Identities = 61/197 (30%), Positives = 93/197 (47%), Gaps = 20/197 (10%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVER--ETT 192
G + ++GP +GK+TLLRAI G +P + G V V GA + G+V + E
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAK---GTVKVAGASPGKGWRHIGYVPQRHEFA 61
Query: 193 LIGSLTVREYLYYSALLQLPGFFCQRKNV-----VEDAIHAMSLSDYANKLIGGHCYMKG 247
++V + S G+ +R V V DA+ + L++ A++ +G
Sbjct: 62 WDFPISVAHTV-MSGRTGHIGWL-RRPCVADFAAVRDALRRVGLTELADRPVG------E 113
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307
L G+R+RV +AR L RP VL +DEP LD + L+ +LA G +L T
Sbjct: 114 LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMT-THD 172
Query: 308 STEVFGLFDRICLLSNG 324
+ DR+ LL NG
Sbjct: 173 LAQAMATCDRVVLL-NG 188
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 4e-14
Identities = 70/240 (29%), Positives = 108/240 (45%), Gaps = 30/240 (12%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
G ++G + GKSTLL I+G P S G V + G + P V + +L
Sbjct: 10 QGEFISLIGHSGCGKSTLLNLISGLAQPTS----GGVILEGKQITEPGPDRMVVFQNYSL 65
Query: 194 IGSLTVREYLYY---SALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250
+ LTVRE + L L +R+ +VE+ I + L++ A+K G L
Sbjct: 66 LPWLTVRENIALAVDRVLPDLSK--SERRAIVEEHIALVGLTEAADKRPGQ------LSG 117
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSST 309
G ++RV IAR L +RP VL +DEP LD+++ + L ++ T+L +
Sbjct: 118 GMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLM-VTHDVD 176
Query: 310 EVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCP-----IMQSPSDHFLRAINTDF 364
E L DR+ +L+NG G+ L FP P +++ PS + LR F
Sbjct: 177 EALLLSDRVVMLTNGPAANIGQIL-------EVPFPRPRDRLEVVEDPSYYDLRNEALYF 229
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 6e-14
Identities = 59/230 (25%), Positives = 100/230 (43%), Gaps = 33/230 (14%)
Query: 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGE 169
+L+ ++ G+R + PG + I+GP +GKSTLL+A++G L + GE
Sbjct: 6 NLSYSLAGRRLLDGVSLD-----LRPGEVLAILGPNGAGKSTLLKALSGELSPDS---GE 57
Query: 170 VFVNG-AKSEMPYGSY----GFVERETTLIGSLTVREYLYYSAL-LQLPGFFCQRKNVVE 223
V +NG + P + + ++L TV+E + + + + + +
Sbjct: 58 VTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAA 117
Query: 224 DAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL------VMRPHVLFIDEPLYH 277
A+ A LS A + + L GE++RV++AR L V LF+DEP
Sbjct: 118 QALAATDLSGLAGRDY------RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA 171
Query: 278 LDSVSALLMMVTLKKLASTG---CTLLFTINQSSTEVFGLFDRICLLSNG 324
LD + ++LA G +L +N ++ DRI LL G
Sbjct: 172 LDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYA----DRIVLLHQG 217
|
Length = 259 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 7e-14
Identities = 61/210 (29%), Positives = 93/210 (44%), Gaps = 28/210 (13%)
Query: 134 LPGT-MTVIMGPAKSGKSTLLRAIAGRL-PHSARMY--GEVFVNGAKS-EMP--YGSYGF 186
LPG +T I G + SGK+TL+R IAG P + G + K +P G+
Sbjct: 20 LPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS-----LSDYANKLIGG 241
V +E L L+VR L Y P + + + + + L +L GG
Sbjct: 80 VFQEARLFPHLSVRGNLRYGMKRARP----SERRISFERVIELLGIGHLLGRLPGRLSGG 135
Query: 242 HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTL 300
E++RV I R L+ P +L +DEPL LD ++ L++L A G +
Sbjct: 136 ----------EKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPI 185
Query: 301 LFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
L+ ++ S EV L DR+ +L +G G
Sbjct: 186 LY-VSHSLQEVLRLADRVVVLEDGRVAAAG 214
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 8e-14
Identities = 57/198 (28%), Positives = 97/198 (48%), Gaps = 18/198 (9%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVF---VNGAKSEMPYG---SYGFV 187
PG + ++ GP+ SGK+TLL I G R + +V + GA + + G++
Sbjct: 30 PGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSL--KVLGQELYGASEKELVQLRRNIGYI 87
Query: 188 ERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247
+ L+G LT R+ + + LQ + + + + A+ L D+ + Y
Sbjct: 88 FQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDY------YPHN 141
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQ 306
L G+++RV IAR LV RP ++ DEP LDS S ++ ++KLA GCT+L +
Sbjct: 142 LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHD 201
Query: 307 SSTEVFGLFDRICLLSNG 324
+ + + DRI + +G
Sbjct: 202 N--RILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 8e-14
Identities = 56/203 (27%), Positives = 88/203 (43%), Gaps = 31/203 (15%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGR-LPHSARMYGEVFVNGA------KSEMPY--GSYGF 186
G ++GP+ +GKSTLL+ I LP S G + VNG +PY G
Sbjct: 27 GEFVFLVGPSGAGKSTLLKLIYKEELPTS----GTIRVNGQDVSDLRGRAIPYLRRKIGV 82
Query: 187 VERETTLIGSLTVREYLYYS-ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
V ++ L+ V E + ++ + +P +++ V A+ + LS
Sbjct: 83 VFQDFRLLPDRNVYENVAFALEVTGVPPREIRKR--VPAALELVGLSHKH------RALP 134
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 305
L GE++RV IAR +V P +L DEP +LD + +M LKK+ G T++ +
Sbjct: 135 AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATH 194
Query: 306 QSSTEVFGLFD----RICLLSNG 324
L D R+ L G
Sbjct: 195 AKE-----LVDTTRHRVIALERG 212
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 1e-13
Identities = 54/206 (26%), Positives = 93/206 (45%), Gaps = 15/206 (7%)
Query: 140 VIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAK-SEMP--YGSYGFVERETTLIG 195
VI+GP SGKS LL IAG + P S G++ +NG + +P +V + L
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDS----GKILLNGKDITNLPPEKRDISYVPQNYALFP 84
Query: 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255
+TV + + Y + K +E + ++ + L+ + + L GE++R
Sbjct: 85 HMTVYKNIAYGLKKRK-----VDKKEIERKVLEIAEMLGIDHLL--NRKPETLSGGEQQR 137
Query: 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 315
V IAR LV+ P +L +DEP LD + + LKK+ + + E + L
Sbjct: 138 VAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALA 197
Query: 316 DRICLLSNGNTLFFGETLACLQHFSN 341
D++ ++ NG + G+ + N
Sbjct: 198 DKVAIMLNGKLIQVGKPEEVFKKPKN 223
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-13
Identities = 48/178 (26%), Positives = 80/178 (44%), Gaps = 20/178 (11%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA------KSEMPY--GSYGF 186
G + GP+ +GK+TLL+ + G L S G+V + G ++P G
Sbjct: 27 KGEFLFLTGPSGAGKTTLLKLLYGALTPSR---GQVRIAGEDVNRLRGRQLPLLRRRIGV 83
Query: 187 VERETTLIGSLTVREYLYYSALLQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
V ++ L+ TV E + ++ QR+ V A+ + L A +
Sbjct: 84 VFQDFRLLPDRTVYENVALPLEVRGKKEREIQRR--VGAALRQVGLEHKA------DAFP 135
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT 303
+ L GE++RV IAR +V P +L DEP +LD + ++ LK+L G T++
Sbjct: 136 EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVA 193
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 65/256 (25%), Positives = 104/256 (40%), Gaps = 39/256 (15%)
Query: 90 PLPEGAAVARKIAGAS--VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKS 147
P P+ I + K+++V GK K++ + PG I+GP +
Sbjct: 14 PEPKEPKKRHPIEINEPLIELKNVSVRRNGK-----KILGDLSWQVNPGEHWAIVGPNGA 68
Query: 148 GKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG----SLTVREYL 203
GK+TLL + G P S+ G+V + G G F R+ IG L R +
Sbjct: 69 GKTTLLSLLTGEHPPSS---GDVTLLG--RRFGKGETIFELRKR--IGLVSSELHERFRV 121
Query: 204 YYSAL-LQLPGFFC-----------QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251
+ + L GFF + + + + A++ L G
Sbjct: 122 RETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADR------PFGSLSQG 175
Query: 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST--GCTLLFTINQSST 309
E+RRV IAR LV P +L +DEP LD ++ ++ L++LA++ LLF + +
Sbjct: 176 EQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLF-VTHHAE 234
Query: 310 EVFGLFDRICLLSNGN 325
E+ F LL G
Sbjct: 235 EIPPCFTHRLLLKEGE 250
|
Length = 257 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 3e-13
Identities = 60/227 (26%), Positives = 104/227 (45%), Gaps = 20/227 (8%)
Query: 112 TVTIKG-KRRYSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGE 169
+ I+G + + DK V + + PG + ++GP +GK+T R I G L + GE
Sbjct: 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTE---GE 58
Query: 170 VFVNGAK-SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA 228
+ NG S+ G++ E L +TV + L Y A L K + + I
Sbjct: 59 ITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAEL---------KGMPKAEI-Q 108
Query: 229 MSLSDYANKL-IGGHCY--MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285
L + +L I G +K L G +++++ ++ P +L +DEP LD V+ L
Sbjct: 109 KKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVEL 168
Query: 286 MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332
+ + +L G T++F+ + V L DR+ +L G T+ +G
Sbjct: 169 LKDAIFELKEEGATIIFS-SHRMEHVEELCDRLLMLKKGQTVLYGTV 214
|
Length = 300 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 4e-13
Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 29/218 (13%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMY-GEVFVNGA 175
KR + + N G V++GP+ GK+T LR IAG P S R+Y G V
Sbjct: 8 KRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDL 67
Query: 176 KSE-----MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNV---VEDAIH 227
+ M + +Y L +TV + + + L+L + + V +
Sbjct: 68 PPKDRDIAMVFQNYA-------LYPHMTVYDNIAFG--LKLRKV--PKDEIDERVREVAE 116
Query: 228 AMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 287
+ + ++ K L G+R+RV + R +V P V +DEPL +LD+ + M
Sbjct: 117 LLQIEHLLDR------KPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMR 170
Query: 288 VTLKKL-ASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
LK+L G T ++ + E + DRI ++++G
Sbjct: 171 AELKRLQQRLGTTTIY-VTHDQVEAMTMADRIAVMNDG 207
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 4e-13
Identities = 59/211 (27%), Positives = 92/211 (43%), Gaps = 44/211 (20%)
Query: 113 VTIKG-KRRYSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV 170
+ IK + + D V+K + G + VI+GP+ SGKSTLLR I + G +
Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDS---GTI 57
Query: 171 FVNGAK------------SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQR 218
++G K ++ G V ++ L LTV E + A +++ G +
Sbjct: 58 IIDGLKLTDDKKNINELRQKV-----GMVFQQFNLFPHLTVLENITL-APIKVKGM--SK 109
Query: 219 KNVVEDAIHAMS---LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPL 275
E A+ + L+D A+ Y L G+++RV IAR L M P V+ DEP
Sbjct: 110 AEAEERALELLEKVGLADKADA------YPAQLSGGQQQRVAIARALAMNPKVMLFDEPT 163
Query: 276 YHLDSVSALLMMV-----TLKKLASTGCTLL 301
LD +V +K LA G T++
Sbjct: 164 SALDP-----ELVGEVLDVMKDLAEEGMTMV 189
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 5e-13
Identities = 47/193 (24%), Positives = 80/193 (41%), Gaps = 24/193 (12%)
Query: 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA-----K 176
+ N G +T ++G + +GKSTLL + G L + GE+ VNG
Sbjct: 333 GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQ---GEIRVNGIDLRDLS 389
Query: 177 SEMPYGSYGFVERETTLIGSLTVRE--YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY 234
E +V + L + T+RE L + A+ L ++
Sbjct: 390 PEAWRKQISWVSQNPYLF-AGTIRENILLARPDA---------SDEEIIAALDQAGLLEF 439
Query: 235 ANKLIGGHCYM----KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290
K G + GL G+ +R+ +AR L+ +L +DEP HLD+ + +++ L
Sbjct: 440 VPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQAL 499
Query: 291 KKLASTGCTLLFT 303
++LA L+ T
Sbjct: 500 QELAKQKTVLVIT 512
|
Length = 559 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 7e-13
Identities = 49/153 (32%), Positives = 72/153 (47%), Gaps = 26/153 (16%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G V+ GP SGK+TLLR IAG LP +A G + ++G + P V +
Sbjct: 27 AGEALVLTGPNGSGKTTLLRLIAGLLPPAA---GTIKLDGGDIDDPD-----VAEACHYL 78
Query: 195 G-------SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247
G +LTV E L + A F + + A+ A+ L+ A+ L G+
Sbjct: 79 GHRNAMKPALTVAENLEFWA-----AFLGGEELDIAAALEAVGLAPLAH-LPFGY----- 127
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280
L G++RRV +AR LV + +DEP LD+
Sbjct: 128 LSAGQKRRVALARLLVSNRPIWILDEPTAALDA 160
|
Length = 207 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 8e-13
Identities = 57/216 (26%), Positives = 87/216 (40%), Gaps = 30/216 (13%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSYGFVER---- 189
PG + ++GP +GK+TL I G S+ G V G + +P +
Sbjct: 29 PGEIVGLIGPNGAGKTTLFNLITGFYKPSS---GTVIFRGRDITGLP--PHRIARLGIAR 83
Query: 190 ---ETTLIGSLTVRE--------YLYYSALLQLPGFFCQRKNVVEDAIHA---MSLSDYA 235
T L LTV E L S LL P + + E A + L + A
Sbjct: 84 TFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELA 143
Query: 236 NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS 295
++ G L G++RR+ IAR L +P +L +DEP L+ + +++L
Sbjct: 144 DRPAGN------LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD 197
Query: 296 TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331
G + I V GL DRI +L+ G + G
Sbjct: 198 RGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGT 233
|
Length = 250 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 8e-13
Identities = 68/234 (29%), Positives = 104/234 (44%), Gaps = 46/234 (19%)
Query: 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNG------ 174
+ +K+ N PG I+GP+ +GKSTLLR I RL P S G + + G
Sbjct: 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCI-NRLVEPSS----GSILLEGTDITKL 69
Query: 175 ---------AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ-LPGFFCQRKNVVED 224
+ M + Y +ER T L L R L Y + L G F + ED
Sbjct: 70 RGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGR--LGYKPTWRSLLGRFSE-----ED 122
Query: 225 AIHAMS------LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 278
A+S L+D A + L G+++RV IAR L +P ++ DEP+ L
Sbjct: 123 KERALSALERVGLADKAYQRA------DQLSGGQQQRVAIARALAQQPDLILADEPIASL 176
Query: 279 DSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLF-DRICLLSNGNTLFFG 330
D ++ +M LK++ G T++ ++Q ++ + DRI L G +F G
Sbjct: 177 DPKTSKQVMDYLKRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDG 228
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 9e-13
Identities = 57/222 (25%), Positives = 92/222 (41%), Gaps = 20/222 (9%)
Query: 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNG----A 175
+K + G +T ++GP+ GKSTLLR + L A GEV ++G
Sbjct: 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYD 71
Query: 176 KSEMPYG---SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS 232
G V ++ ++ + + Y L + VE+A+ +L
Sbjct: 72 LDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALW 130
Query: 233 DY-ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK 291
D ++L GL G+++R+ +AR L P VL +DEP LD +S + +
Sbjct: 131 DEVKDRLHAL-----GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIA 185
Query: 292 KLASTGCTLLFTIN-QSSTEVFGLFDRICLLSNGNTLFFGET 332
+L ++ T N Q + V DR L NG + FG T
Sbjct: 186 ELKKEYTIVIVTHNMQQAARV---ADRTAFLLNGRLVEFGPT 224
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 9e-13
Identities = 62/243 (25%), Positives = 103/243 (42%), Gaps = 36/243 (14%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-AKSEMPYG--------SYG 185
G + VIMG + SGKSTLLR I + ++ G+V ++G + M
Sbjct: 49 EGEIFVIMGLSGSGKSTLLRCINRLIEPTS---GKVLIDGQDIAAMSRKELRELRRKKIS 105
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQ-RKNVVEDAIHAMSLSDYANKLIGGHCY 244
V + L+ TV E + + L++ G R+ +A+ + L + +K
Sbjct: 106 MVFQSFALLPHRTVLENVAFG--LEVQGVPRAEREERAAEALELVGLEGWEHKYPDE--- 160
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFT 303
L G ++RV +AR L + P +L +DE LD + M L +L A T++F
Sbjct: 161 ---LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVF- 216
Query: 304 INQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTD 363
I E L DRI ++ +G + G P I+ +P++ ++R
Sbjct: 217 ITHDLDEALRLGDRIAIMKDGRLV-------------QVGTPEEILTNPANDYVREFFRG 263
Query: 364 FDR 366
DR
Sbjct: 264 VDR 266
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 1e-12
Identities = 48/175 (27%), Positives = 74/175 (42%), Gaps = 21/175 (12%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG----FVERE 190
G + GP GK+TLLR +AG L + GEV NG ++
Sbjct: 25 AGEALQVTGPNGIGKTTLLRILAGLLRPDS---GEVRWNGTALAEQRDEPHRNILYLGHL 81
Query: 191 TTLIGSLTVREYL-YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249
L L+ E L +++A+ + +EDA+ A+ L+ + + L
Sbjct: 82 PGLKPELSALENLHFWAAIHG------GAQRTIEDALAAVGLTGFEDLPAA------QLS 129
Query: 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVS-ALLMMVTLKKLASTGCTLLFT 303
G++RR+ +AR + R + +DEP LD ALL + LA G LL T
Sbjct: 130 AGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTT 184
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 1e-12
Identities = 52/236 (22%), Positives = 90/236 (38%), Gaps = 44/236 (18%)
Query: 87 PSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAK 146
PL A V A S+ + ++V G+ ++ + PG ++GP+
Sbjct: 304 APRPLAGKAPVTAAPA-PSLEFSGVSVAYPGR----RPALRPVSFTVPPGERVALVGPSG 358
Query: 147 SGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYY 205
+GKSTLL + G P G + VNG + + R+ + +
Sbjct: 359 AGKSTLLNLLLGFVDPTE----GSIAVNG--------------VPLADADADSWRDQIAW 400
Query: 206 SALLQLPGFFCQ--RKNV-----------VEDAIHAMSLSDYANKLIGGHCYM-----KG 247
Q P F +N+ + +A+ L ++ L G G
Sbjct: 401 VP--QHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAG 458
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT 303
L G+ +R+ +AR + +L +DEP HLD+ + ++ L+ LA LL T
Sbjct: 459 LSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVT 514
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 1e-12
Identities = 55/200 (27%), Positives = 88/200 (44%), Gaps = 17/200 (8%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG----AKSEMPYGSYGFVERET 191
G + +GP +GK+T +R + L ++ G V G + S G V +
Sbjct: 19 GEVFGFLGPNGAGKTTTIRMLTTLLRPTS---GTARVAGYDVVREPRKVRRSIGIVPQYA 75
Query: 192 TLIGSLTVREYLY-YSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250
++ LT RE L L LP + + E+ + L + A++ +G G
Sbjct: 76 SVDEDLTGRENLEMMGRLYGLPKDEAEER--AEELLELFELGEAADRPVG---TYSG--- 127
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310
G RRR+ IA L+ +P VLF+DEP LD + + ++ L G T+L T E
Sbjct: 128 GMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLT-THYMEE 186
Query: 311 VFGLFDRICLLSNGNTLFFG 330
L DRI ++ +G + G
Sbjct: 187 ADKLCDRIAIIDHGRIIAEG 206
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 2e-12
Identities = 63/252 (25%), Positives = 100/252 (39%), Gaps = 46/252 (18%)
Query: 74 ASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTV---TIKGKRRYSDKVVKSSN 130
A P L P A + ++L+ + KG VK+ +
Sbjct: 257 AVPRLGD-EKIIRLPRRGPLRAEPLLSV-------RNLSKRYGSRKGLFVRERGEVKAVD 308
Query: 131 GYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS---- 183
+ G ++G + SGKSTL R +AG LP S+ G + +G ++ G
Sbjct: 309 DVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSS---GSIIFDGQDLDLTGGELRRL 365
Query: 184 -----YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANK 237
F + ++L +TV + L + G +R+ V + + + L ++ ++
Sbjct: 366 RRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDR 425
Query: 238 LIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL----LMMVT--LK 291
Y L G+R+RV IAR L + P +L +DEP VSAL V LK
Sbjct: 426 ------YPHELSGGQRQRVAIARALALEPKLLILDEP------VSALDVSVQAQVLNLLK 473
Query: 292 KL-ASTGCTLLF 302
L G T LF
Sbjct: 474 DLQEELGLTYLF 485
|
Length = 539 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 2e-12
Identities = 51/201 (25%), Positives = 81/201 (40%), Gaps = 68/201 (33%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSY----GFVER 189
PG I+GP+ SGKSTLL+ + ++ GE+ ++G ++ S +V +
Sbjct: 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPTS---GEILIDGVDLRDLDLESLRKNIAYVPQ 83
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249
+ L S T+RE N+ LS
Sbjct: 84 DPFLF-SGTIRE------------------NI---------LSG---------------- 99
Query: 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF------T 303
G+R+R+ IAR L+ P +L +DE LD + L++ L+ LA G T++ T
Sbjct: 100 -GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLST 157
Query: 304 INQSSTEVFGLFDRICLLSNG 324
I DRI +L +G
Sbjct: 158 IRD--------ADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 4e-12
Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 24/178 (13%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG----FVERET 191
G + GP SGK+TLLR +AG P A G V +NG + S ++
Sbjct: 26 GEALQVTGPNGSGKTTLLRILAGLSPPLA---GRVLLNGGPLDFQRDSIARGLLYLGHAP 82
Query: 192 TLIGSLTVREYLYYSALLQLPGFFCQ--RKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249
+ +L+V E L F+ VE+A+ + L+ + + L
Sbjct: 83 GIKTTLSVLENLR---------FWHADHSDEQVEEALARVGLNGF------EDRPVAQLS 127
Query: 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307
G++RRV +AR L+ + +DEP LD + + G ++ T +Q
Sbjct: 128 AGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 4e-12
Identities = 55/200 (27%), Positives = 92/200 (46%), Gaps = 21/200 (10%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYG--SYGFVERET 191
G + ++GP+ SGK+TLLR IAG L G + G +++P + GFV +
Sbjct: 27 SGELVALLGPSGSGKTTLLRLIAG-LERPDS--GTILFGGEDATDVPVQERNVGFVFQHY 83
Query: 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA----MSLSDYANKLIGGHCYMKG 247
L +TV + + + L P + + +H + L A++ Y
Sbjct: 84 ALFRHMTVFDNVAF-GLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR------YPAQ 136
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLF-TIN 305
L G+R+RV +AR L + P VL +DEP LD+ + L++L T +F T +
Sbjct: 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD 196
Query: 306 QSSTEVFGLFDRICLLSNGN 325
Q E + DR+ +++ G
Sbjct: 197 QE--EALEVADRVVVMNKGR 214
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 6e-12
Identities = 65/250 (26%), Positives = 107/250 (42%), Gaps = 50/250 (20%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA----------------KSEM 179
G + VIMG + SGKSTL+R + + + GE+ V+G K M
Sbjct: 54 GEIFVIMGLSGSGKSTLVRLLNRLIEPTR---GEILVDGKDIAKLSAAELRELRRKKISM 110
Query: 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF-FCQRKNVVEDAIHAMSLSDYANKL 238
+ S+ L+ TV E + + L++ G +R+ +A+ + L YA+K
Sbjct: 111 VFQSFA-------LLPHRTVLENVAFG--LEVQGVPKAEREERALEALELVGLEGYADK- 160
Query: 239 IGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTG 297
Y L G ++RV +AR L P +L +DE LD + M L +L A
Sbjct: 161 -----YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLK 215
Query: 298 CTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFL 357
T++F I E + DRI ++ +G +Q G P I+ +P++ ++
Sbjct: 216 KTIVF-ITHDLDEALRIGDRIAIMKDGEI---------VQV----GTPEEILLNPANDYV 261
Query: 358 RAINTDFDRI 367
R + DR
Sbjct: 262 RDFVRNVDRS 271
|
Length = 386 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 7e-12
Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 26/179 (14%)
Query: 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
G I GP +GK+TLLR +AG L A GEV+ G + SY +
Sbjct: 26 NAGEALQITGPNGAGKTTLLRILAGLLRPDA---GEVYWQGEPIQNVRESY---HQALLY 79
Query: 194 IG-------SLTVREYL-YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
+G LT E L ++ + +A+ + L+ + +G
Sbjct: 80 LGHQPGIKTELTALENLHFWQRFHG-----SGNAATIWEALAQVGLAGLEDLPVG----- 129
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS-ALLMMVTLKKLASTGCTLLFT 303
L G++RRV +AR + + +DEP LD ALL + A G LL T
Sbjct: 130 -QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTT 187
|
Length = 209 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 7e-12
Identities = 59/221 (26%), Positives = 99/221 (44%), Gaps = 30/221 (13%)
Query: 141 IMGPAKSGKSTLLRAIAG-RLPHSAR-MYGEVFVNGAKSEMPYGSYGFVERETTLIGSLT 198
++GP+ GK+TLLR +AG P S M V + + V + L +T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRH--INMVFQSYALFPHMT 58
Query: 199 VREYLYYSALLQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257
V E + + ++ +P + K V +A+ + L ++A++ L G+++RV
Sbjct: 59 VEENVAFGLKMRKVPR--AEIKPRVLEALRLVQLEEFADR------KPHQLSGGQQQRVA 110
Query: 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLF-TINQSSTEVFGLF 315
+AR LV +P +L +DEPL LD M + LK + G T +F T +Q E +
Sbjct: 111 LARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE--EAMTMS 168
Query: 316 DRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHF 356
DRI ++ G + G P I + P++ F
Sbjct: 169 DRIAIMRKGK-------------IAQIGTPEEIYEEPANLF 196
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 9e-12
Identities = 52/211 (24%), Positives = 91/211 (43%), Gaps = 36/211 (17%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSY-------GF 186
G + ++G +GK+TLL+ I G LP G + +G + +P + G+
Sbjct: 25 EGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLP--PHERARAGIGY 79
Query: 187 V--ERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM-----SLSDYANKLI 239
V R + LTV E L L G + +R+ + + + L + +L
Sbjct: 80 VPEGRR--IFPELTVEENL-------LLGAYARRRAKRKARLERVYELFPRLKERRKQL- 129
Query: 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 299
G + G GE++ + IAR L+ RP +L +DEP L + +++L G T
Sbjct: 130 AGT--LSG---GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVT 184
Query: 300 LLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
+L + Q++ + DR +L G + G
Sbjct: 185 ILL-VEQNARFALEIADRAYVLERGRVVLEG 214
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (164), Expect = 9e-12
Identities = 62/233 (26%), Positives = 102/233 (43%), Gaps = 34/233 (14%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK---------SEMPYGSYGF 186
G + VIMG + SGKST++R + RL R G+V ++G E+
Sbjct: 54 GEIFVIMGLSGSGKSTMVRLL-NRLIEPTR--GQVLIDGVDIAKISDAELREVRRKKIAM 110
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGFFC-QRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
V + L+ +TV + + ++L G +R+ DA+ + L +YA H Y
Sbjct: 111 VFQSFALMPHMTVLDNTAFG--MELAGINAEERREKALDALRQVGLENYA------HSYP 162
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 305
L G R+RV +AR L + P +L +DE LD + M L KL + + I+
Sbjct: 163 DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFIS 222
Query: 306 QSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLR 358
E + DRI ++ NG + G P I+ +P++ ++R
Sbjct: 223 HDLDEAMRIGDRIAIMQNGEVV-------------QVGTPDEILNNPANDYVR 262
|
Length = 400 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 9e-12
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 60/244 (24%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
++L+V + G+ ++ + PG + I+GP +GKSTLLRA++G L + G
Sbjct: 6 RNLSVRLGGRT-----LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDS---G 57
Query: 169 EVFVNGAKSEMPYGSYGFVER---------ETTLIGSLTVREYLYYSALLQLPGFFCQR- 218
EV +NG P + E ++L TV E + A+ + P +
Sbjct: 58 EVRLNGR----PLADWSPAELARRRAVLPQHSSLSFPFTVEEVV---AMGRAPHGLSRAE 110
Query: 219 -KNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV------MRPHVLFI 271
+V A+ + L+ A + Y + L GE++RV++AR L P L +
Sbjct: 111 DDALVAAALAQVDLAHLAGRD-----YPQ-LSGGEQQRVQLARVLAQLWEPDGPPRWLLL 164
Query: 272 DEPLYHLDSVSAL------LMMVTLKKLASTG----CTLLFTINQSSTEVFGLF-DRICL 320
DEP SAL ++ ++LA +L +N ++ + DRI L
Sbjct: 165 DEP------TSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAA-----RYADRIVL 213
Query: 321 LSNG 324
L G
Sbjct: 214 LHQG 217
|
Length = 258 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 40/237 (16%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEMPYG------SYGFV 187
G V++GP+ SGK+T ++ I RL P S GE+F++G + G+V
Sbjct: 27 GEFLVLIGPSGSGKTTTMKMI-NRLIEPTS----GEIFIDG-EDIREQDPVELRRKIGYV 80
Query: 188 ERETTLIGSLTVREYLYYSALLQLPGFF-CQRKNVVEDAIHAMSLSD--YANKLIGGHCY 244
++ L +TV E + + + +L + + + ++ + + L +A++ Y
Sbjct: 81 IQQIGLFPHMTVEENI--ALVPKLLKWPKEKIRERADELLALVGLDPAEFADR------Y 132
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFT 303
L G+++RV +AR L P +L +DEP LD ++ + K+L G T++F
Sbjct: 133 PHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVF- 191
Query: 304 INQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAI 360
+ E F L DRI ++ NG + G P I++SP++ F+
Sbjct: 192 VTHDIDEAFRLADRIAIMKNGEIVQVGT-------------PDEILRSPANDFVAEF 235
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 1e-11
Identities = 64/199 (32%), Positives = 93/199 (46%), Gaps = 27/199 (13%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAK------SEMPYGSYGFVE 188
G +T I+GP+ SGKSTLL IAG P S G V +NG ++ P +
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFETPQS----GRVLINGVDVTAAPPADRPVSM---LF 76
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246
+E L LTV + + L PG + + +E A+ + L+ +L G
Sbjct: 77 QENNLFAHLTVEQNV---GLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGE----- 128
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLMMVTLKKLASTGCTLLFTIN 305
L GER+RV +AR LV VL +DEP LD ++ A ++ + L A T T+L +
Sbjct: 129 -LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTH 187
Query: 306 QSSTEVFGLFDRICLLSNG 324
Q + L R+ L NG
Sbjct: 188 QPE-DAKRLAQRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 2e-11
Identities = 61/228 (26%), Positives = 106/228 (46%), Gaps = 34/228 (14%)
Query: 120 RYSD--KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177
YSD +K N G +T I+G +GKSTL + + G L S+ G + +G
Sbjct: 14 NYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS---GRILFDG--K 68
Query: 178 EMPYGSYGFVE-RETTLIG-----------SLTVREYLYYSAL-LQLPGFFCQRKNVVED 224
+ Y G ++ RE+ +G S +V + + + A+ L+LP +++ V++
Sbjct: 69 PIDYSRKGLMKLRES--VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR--VDN 124
Query: 225 AIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284
A+ + +K HC L G+++RV IA LVM P VL +DEP LD +
Sbjct: 125 ALKRTGIEHLKDKPT--HC----LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178
Query: 285 LMMVTLKKLAS-TGCTLLFTINQSSTEVFGLF-DRICLLSNGNTLFFG 330
+M L ++ G T++ I ++ L+ D + ++ G + G
Sbjct: 179 EIMKLLVEMQKELGLTII--IATHDIDIVPLYCDNVFVMKEGRVILQG 224
|
Length = 283 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 61/220 (27%), Positives = 106/220 (48%), Gaps = 31/220 (14%)
Query: 120 RYSD--KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAK 176
Y D + +K N A G M ++GP +GKSTL G L P S GEV + G
Sbjct: 10 SYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTS----GEVLIKGE- 64
Query: 177 SEMPYGSYGFVERETTL----------IGSLTVREYLYYSAL-LQLPGFFCQRKNVVEDA 225
+ Y +E T+ + + TV E + + L L L +++ V++A
Sbjct: 65 -PIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKR--VKEA 121
Query: 226 IHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285
+ A+ + + NK H ++ G G+++RV IA L M+P ++ +DEP LD + A
Sbjct: 122 LKAVGMEGFENK--PPH-HLSG---GQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175
Query: 286 MMVTLKKLASTGCTLLFTINQSSTEVFGLF-DRICLLSNG 324
+M L L G T++ I+ ++ ++ D++ ++S+G
Sbjct: 176 IMKLLYDLNKEGITII--ISTHDVDLVPVYADKVYVMSDG 213
|
Length = 275 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 3e-11
Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 17/221 (7%)
Query: 110 DLTVTIKGKRR-YSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY 167
++ + + G + Y DKVV + + + G ++GP +GKST+ R + G +
Sbjct: 2 NVAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDR--- 58
Query: 168 GEVFVNG----AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVE 223
G++ V G +++ + + G V + L TVRE LL +F +E
Sbjct: 59 GKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRE-----NLLVFGRYFGMSTREIE 113
Query: 224 DAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
I SL ++A + L G +RR+ +AR L+ P +L +DEP LD +
Sbjct: 114 AVIP--SLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 171
Query: 284 LLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
L+ L+ L + G T+L T E L DR+C+L +G
Sbjct: 172 HLIWERLRSLLARGKTILLT-THFMEEAERLCDRLCVLESG 211
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 3e-11
Identities = 54/186 (29%), Positives = 81/186 (43%), Gaps = 41/186 (22%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-----------SEMPYGS 183
G + VI+GP+ SGKSTLLR + G + G + V+G ++
Sbjct: 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPDS---GSITVDGEDVGDKKDILKLRRKV---- 79
Query: 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS------LSDYANK 237
G V ++ L LTV E + A +++ K + A+ L+D A+
Sbjct: 80 -GMVFQQFNLFPHLTVLENVTL-APVKVKK---LSKAEARE--KALELLEKVGLADKADA 132
Query: 238 LIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD--SVSALLMMVTLKKLAS 295
Y L G+++RV IAR L M P V+ DEP LD V +L +K LA
Sbjct: 133 ------YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD--VMKDLAE 184
Query: 296 TGCTLL 301
G T++
Sbjct: 185 EGMTMI 190
|
Length = 240 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 5e-11
Identities = 72/234 (30%), Positives = 111/234 (47%), Gaps = 32/234 (13%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYG--SYGFVERETT 192
G V +GP+ GKSTLLR IAG ++ G++F+ + +++P G V +
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLEDITS---GDLFIGEKRMNDVPPAERGVGMVFQSYA 85
Query: 193 LIGSLTVREYLYYSALLQLPGF----FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248
L L+V E + + L+L G QR N V + + L D K + G
Sbjct: 86 LYPHLSVAENMSFG--LKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSG------- 136
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQS 307
G+R+RV I R LV P V +DEPL +LD+ + M + + +L G T+++ +
Sbjct: 137 --GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY-VTHD 193
Query: 308 STEVFGLFDRICLLSNGNTLFFGETLACLQHF-SN---AGFPCPIMQSPSDHFL 357
E L D+I +L G G+ L L H+ +N AGF + SP +FL
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGKPLE-LYHYPANRFVAGF----IGSPKMNFL 242
|
Length = 369 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 5e-11
Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 38/215 (17%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-----------AKSEMPYGS 183
G + ++G +GK+TLL+ I G + + G + +G A+ +
Sbjct: 28 RGEIVALLGRNGAGKTTLLKTIMGLVRPRS---GRIIFDGEDITGLPPHERARLGI---- 80
Query: 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM-----SLSDYANKL 238
+V + LTV E L L + + K E + + L + N+
Sbjct: 81 -AYVPEGRRIFPRLTVEEN------LLLGAYARRDKEAQERDLEEVYELFPRLKERRNQR 133
Query: 239 IGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTG 297
G + G GE++ + IAR L+ RP +L +DEP L + +K+L G
Sbjct: 134 AG---TLSG---GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGG 187
Query: 298 CTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332
T+L + Q++ + DR +L NG + G
Sbjct: 188 MTILL-VEQNARFALEIADRGYVLENGRIVLSGTA 221
|
Length = 237 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 6e-11
Identities = 63/228 (27%), Positives = 98/228 (42%), Gaps = 29/228 (12%)
Query: 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA 164
S+ LT K + + + A G + +GP +GKST ++ I G LP +
Sbjct: 2 SIRVSSLT-----KLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDS 56
Query: 165 RMYGEVFVNG------AKSEMPYGSYGFVERETTLIGSLTVREYLYYSA-LLQLPGFFCQ 217
G V V G K + G++ L + VREYL + A + + G
Sbjct: 57 ---GSVQVCGEDVLQNPKEVQR--NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKG--QL 109
Query: 218 RKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYH 277
K VE+ I + L +K IG L G R+RV +A+ L+ P VL +DEP
Sbjct: 110 LKQRVEEMIELVGLRPEQHKKIGQ------LSKGYRQRVGLAQALIHDPKVLILDEPTTG 163
Query: 278 LDSVSALLMMVTLKKLASTGCTLLFT-INQSSTEVFGLFDRICLLSNG 324
LD + + +K + +L T I Q EV + DR+ +++ G
Sbjct: 164 LDPNQLVEIRNVIKNIGKDKTIILSTHIMQ---EVEAICDRVIIINKG 208
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 9e-11
Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 19/195 (9%)
Query: 143 GPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMP-YG----SYGFVERETTLIGS 196
GP +GK+T I G + + G++ ++G +++P + G++ +E ++
Sbjct: 33 GPNGAGKTTTFYMIVGLVKPDS---GKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89
Query: 197 LTVREYLYYSALLQLPGF-FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255
LTV E + A+L++ G +R+ +E+ + ++ L GERRR
Sbjct: 90 LTVEENI--LAVLEIRGLSKKEREEKLEELLEEFHITHLRKSK----AS--SLSGGERRR 141
Query: 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 315
V IAR L P L +DEP +D ++ + +K L G +L T + + E +
Sbjct: 142 VEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLIT-DHNVRETLSIT 200
Query: 316 DRICLLSNGNTLFFG 330
DR ++ G L G
Sbjct: 201 DRAYIIYEGKVLAEG 215
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 1e-10
Identities = 48/228 (21%), Positives = 96/228 (42%), Gaps = 40/228 (17%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
++++ + K ++ + G + + G +GK+TL + +AG + S+ G
Sbjct: 3 ENISFSYKKGTE----ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESS---G 55
Query: 169 EVFVNG--AKSEMPYGSYGFVERETTL-IGSLTVREYLYYSALLQLPGFFCQRKNVVEDA 225
+ +NG K++ S G+V ++ + + +VRE L L +L E
Sbjct: 56 SILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLG-LKELDA----GNEQAETV 110
Query: 226 IHAMSLSDYANK----LIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP-----LY 276
+ + L + L G G+++R+ IA L+ +L DEP
Sbjct: 111 LKDLDLYALKERHPLSLSG----------GQKQRLAIAAALLSGKDLLIFDEPTSGLDYK 160
Query: 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
+++ V L +++LA+ G + I + + DR+ LL+NG
Sbjct: 161 NMERVGEL-----IRELAAQG-KAVIVITHDYEFLAKVCDRVLLLANG 202
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 1e-10
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 24/178 (13%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG------AKSEMPY--GSYGF 186
G + GP+ +GKSTLL+ I G + G++ VNG E+P+ G
Sbjct: 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGV 83
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGFFCQR---KNVVEDAIHAMSLSDYANKLIGGHC 243
V ++ L+ TV E + L++ G + V + + + L A
Sbjct: 84 VFQDFRLLPDRTVYENVALP--LRVIGK--PPREIRRRVSEVLDLVGLKHKA------RA 133
Query: 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
L GE++RV IAR +V +P VL DEP +LD + +M +++ G T+L
Sbjct: 134 LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVL 191
|
Length = 223 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 12/160 (7%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G + V++GP+ GK+TLL IAG +P+ G + ++G E P G V + L+
Sbjct: 26 SGELLVVLGPSGCGKTTLLNLIAGFVPYQH---GSITLDGKPVEGPGAERGVVFQNEGLL 82
Query: 195 GSLTVREYLYYSALLQLPGF-FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253
V++ + + LQL G QR + + + L Y+ L G+R
Sbjct: 83 PWRNVQDNVAFG--LQLAGVEKMQRLEIAHQMLKKVGLEGA------EKRYIWQLSGGQR 134
Query: 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
+RV IAR L P +L +DEP LD+ + M L KL
Sbjct: 135 QRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKL 174
|
Length = 255 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 69/235 (29%), Positives = 100/235 (42%), Gaps = 19/235 (8%)
Query: 95 AAVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYAL-PGTMTVIMGPAKSGKSTLL 153
A A S V DL K Y DK V + + + G ++GP +GKST+
Sbjct: 28 EAKASIPGSMSTVAIDLAGVSKS---YGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIA 84
Query: 154 RAIAGRLPHSARMYGEVFVNG----AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALL 209
R I G A G++ V G A++ + G V + L TVRE LL
Sbjct: 85 RMILGMTSPDA---GKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRE-----NLL 136
Query: 210 QLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVL 269
+F +E I SL ++A + L G +RR+ +AR L+ P +L
Sbjct: 137 VFGRYFGMSTREIEAVIP--SLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLL 194
Query: 270 FIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
+DEP LD + L+ L+ L + G T+L T E L DR+C+L G
Sbjct: 195 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLT-THFMEEAERLCDRLCVLEAG 248
|
Length = 340 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 3e-10
Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 23/201 (11%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGS--YG--FVE 188
PG + ++G +GKSTL++ ++G P + GE+ ++G P + G V
Sbjct: 33 PGEVHALLGENGAGKSTLMKILSGVYPPDS---GEILIDGKPVAFSSPRDALAAGIATVH 89
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDA---IHAMSLSDYANKLIGGHCYM 245
+E +L+ +L+V E ++ RK + A + + L + L+G
Sbjct: 90 QELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGD---- 145
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS--VSALLMMVTLKKLASTGCTLLFT 303
L +R+ V IAR L VL +DEP L L ++ ++L + G +++
Sbjct: 146 --LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLI--RRLKAQGVAIIY- 200
Query: 304 INQSSTEVFGLFDRICLLSNG 324
I+ EVF + DRI +L +G
Sbjct: 201 ISHRLDEVFEIADRITVLRDG 221
|
Length = 500 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 4e-10
Identities = 48/150 (32%), Positives = 66/150 (44%), Gaps = 17/150 (11%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMY--GEVFVNGAKSEMPYGSYGFVERET 191
G I+GP+ +GKSTLL IAG L P S + G+ S P S F +E
Sbjct: 24 RGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPV-SMLF--QEN 80
Query: 192 TLIGSLTVREYLYYSALLQLPG--FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249
L LTV + + L PG ++ + M + D +L G L
Sbjct: 81 NLFSHLTVAQNI---GLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG------QLS 131
Query: 250 CGERRRVRIARELVMRPHVLFIDEPLYHLD 279
G+R+RV +AR LV +L +DEP LD
Sbjct: 132 GGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 4e-10
Identities = 61/214 (28%), Positives = 90/214 (42%), Gaps = 30/214 (14%)
Query: 131 GYALPGT-MTVIMGPAKSGKSTLLRAIAG-RLPHSARMY--GEVFVNGAKSEM--PYG-S 183
+ LP +T + GP+ SGK++L+ IAG P R+ G V V+ K P
Sbjct: 18 NFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRR 77
Query: 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS-----LSDYANKL 238
G+V ++ L TVR L Y + F D + A+ L Y L
Sbjct: 78 IGYVFQDARLFPHYTVRGNLRYGMWKSMRAQF--------DQLVALLGIEHLLDRYPGTL 129
Query: 239 IGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGC 298
GG E++RV I R L+ P +L +DEPL LD ++ L++L
Sbjct: 130 SGG----------EKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEIN 179
Query: 299 TLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332
+ ++ S EV L DR+ +L NG G
Sbjct: 180 IPILYVSHSLDEVLRLADRVVVLENGKVKASGPL 213
|
Length = 352 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 5e-10
Identities = 60/223 (26%), Positives = 93/223 (41%), Gaps = 37/223 (16%)
Query: 121 YSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKS 177
Y K + + +LP G +T ++GP GKSTLL+ A RL P S G VF+
Sbjct: 12 YGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQS----GTVFLGDK-- 64
Query: 178 EMPYGSYG---------FVERETTLIGSLTVREYLYY--SALLQLPGFFCQR-KNVVEDA 225
P + + +TVRE + Y S L L G V A
Sbjct: 65 --PISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQA 122
Query: 226 IHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD---SVS 282
+ ++ A++ + L G+R+R +A L V+ +DEP +LD V
Sbjct: 123 MEQTRINHLADRRL------TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVE 176
Query: 283 ALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325
+ +M L T T+L +NQ+S D + +L+NG+
Sbjct: 177 LMRLMRELNTQGKTVVTVLHDLNQASRYC----DHLVVLANGH 215
|
Length = 255 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 5e-10
Identities = 57/204 (27%), Positives = 90/204 (44%), Gaps = 45/204 (22%)
Query: 141 IMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAK-SEMP---------YGSYGFVER 189
++GP+ GK+T+LR IAG P S G + ++G + +P + SY
Sbjct: 45 LLGPSGCGKTTVLRLIAGFETPDS----GRIMLDGQDITHVPAENRHVNTVFQSYA---- 96
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQR------KNVVEDAIHAMSLSDYANKLIGGHC 243
L +TV E + + G Q+ V +A+ + L ++A +
Sbjct: 97 ---LFPHMTVFENVAF-------GLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP---- 142
Query: 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLF 302
L G+++RV IAR +V +P VL +DE L LD M LK L G T +F
Sbjct: 143 --HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVF 200
Query: 303 -TINQSSTEVFGLFDRICLLSNGN 325
T +Q E + DRI ++ +G
Sbjct: 201 VTHDQE--EALTMSDRIVVMRDGR 222
|
Length = 375 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 5e-10
Identities = 52/166 (31%), Positives = 73/166 (43%), Gaps = 26/166 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNG---------AKSEMPYGSY 184
G I+GP+ SGKSTLL +AG P S GEV + G A++ +
Sbjct: 35 RGETVAIVGPSGSGKSTLLAVLAGLDDPSS----GEVRLLGQPLHKLDEDARAALRARHV 90
Query: 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY 244
GFV + LI +LT E + L+ + + + A+ L H Y
Sbjct: 91 GFVFQSFHLIPNLTALENVALPLELRGESS-ADSRAGAKALLEAVGLGKRLT-----H-Y 143
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-----SVSALL 285
L GE++RV +AR RP VLF DEP +LD ++ LL
Sbjct: 144 PAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
|
Length = 228 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 7e-10
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 11/148 (7%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGS--YGFVERET 191
G + +MGP+ GKSTLL + G L GE+++N + +M P G + ++
Sbjct: 27 KGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDA 86
Query: 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251
L L+V + L ++ L G R+N A+ L H L G
Sbjct: 87 LLFPHLSVGQNLLFALPATLKGN--ARRNAANAALERSGLDGAF------HQDPATLSGG 138
Query: 252 ERRRVRIARELVMRPHVLFIDEPLYHLD 279
+R RV + R L+ +P L +DEP LD
Sbjct: 139 QRARVALLRALLAQPKALLLDEPFSRLD 166
|
Length = 213 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 7e-10
Identities = 45/185 (24%), Positives = 77/185 (41%), Gaps = 18/185 (9%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
PG +I G + +GK++LLRA+AG P +G + MP S + +
Sbjct: 418 PGERLLITGESGAGKTSLLRALAGLWP-----WGS-----GRISMPADSALLFLPQRPYL 467
Query: 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254
T+RE L Y + +H + L D A +L + + L GE++
Sbjct: 468 PQGTLREALCYPNAAPDFS-----DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQ 522
Query: 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 314
R+ AR L+ +P +F+DE LD + + LK+ T++ ++ + F
Sbjct: 523 RLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKE-ELPDATVISVGHRPTLWNF-- 579
Query: 315 FDRIC 319
R
Sbjct: 580 HSRQL 584
|
Length = 604 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 8e-10
Identities = 54/176 (30%), Positives = 84/176 (47%), Gaps = 30/176 (17%)
Query: 117 GKRRYSDKVVKSSNGYAL-PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175
G RR D V + + PG ++GP +GKSTL ++ RL + G++ V G
Sbjct: 12 GARRALDDV-----SFTVRPGRFVALLGPNGAGKSTLF-SLLTRLYVAQE--GQISVAGH 63
Query: 176 --KSEMP--YGSYGFVERETTLIGSLTVREYL-YYSALLQLPGFFCQRKNVVEDAIHAMS 230
+ G V ++ TL L+VR+ L Y++AL L + + + + + +
Sbjct: 64 DLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSR--AEARARIAELLARLG 121
Query: 231 LSDYAN----KLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
L++ A+ +L GGH RRRV IAR L+ RP +L +DEP LD S
Sbjct: 122 LAERADDKVRELNGGH----------RRRVEIARALLHRPALLLLDEPTVGLDPAS 167
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 8e-10
Identities = 59/200 (29%), Positives = 92/200 (46%), Gaps = 29/200 (14%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGS--YGFVERETT 192
G ++GP+ GK+TLLR IAG +A G ++ G + +P YG V +
Sbjct: 30 GEFVCLLGPSGCGKTTLLRIIAGLERQTA---GTIYQGGRDITRLPPQKRDYGIVFQSYA 86
Query: 193 LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG----GHCYMKGL 248
L +LTV + + Y G + E A L D L+G Y L
Sbjct: 87 LFPNLTVADNIAY-------GLKNRGMGRAEVAERVAELLD----LVGLPGSERKYPGQL 135
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDS-VSALL---MMVTLKKLASTGCTLLFTI 304
G+++RV +AR L P +L +DEPL LD+ V L + ++L T T++ T
Sbjct: 136 SGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVT--TIMVTH 193
Query: 305 NQSSTEVFGLFDRICLLSNG 324
+Q E + DRI ++++G
Sbjct: 194 DQE--EALSMADRIVVMNHG 211
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 9e-10
Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 25/236 (10%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARM 166
DL+V K K + S + P +T ++GP+ SGKSTLLR+I L +
Sbjct: 9 SDLSVYYNKK-----KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTI 63
Query: 167 YGEVFVNGAKSEMPYGSYGFVERETTLIGS------LTVREYLYYSALLQLPGFFCQRK- 219
G + NG P + +E ++ +++ E + Y L+L G ++
Sbjct: 64 TGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYG--LRLKGIKDKQVL 121
Query: 220 -NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 278
VE ++ S+ D + H GL G+++RV IAR L P ++ +DEP L
Sbjct: 122 DEAVEKSLKGASIWDEVKDRL--HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSAL 179
Query: 279 DSVSALLMMVTLKKLASTGCTLLFT--INQSSTEVFGLFDRICLLSNGNTLFFGET 332
D +SA + TL L LL T + Q+S + DR +G+ + + +T
Sbjct: 180 DPISAGKIEETLLGLKDDYTMLLVTRSMQQASR----ISDRTGFFLDGDLIEYNDT 231
|
Length = 252 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 60/246 (24%), Positives = 99/246 (40%), Gaps = 36/246 (14%)
Query: 111 LTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV 170
L K R S + V+ + G + +G +GKST L+ + G L ++ G+V
Sbjct: 26 LNHFFHRKER-SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTS---GKV 81
Query: 171 FVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS 230
VNG + P+ R L+ + + L++ LP V I+ +
Sbjct: 82 RVNG---KDPFRRREEYLRSIGLV--MGQKLQLWWD----LP---ALDSLEVLKLIYEIP 129
Query: 231 LSDYANKL--------IGGHCY--MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280
++A +L + G ++ L G+R R +A L+ P VLF+DEP LD
Sbjct: 130 DDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV 189
Query: 281 VSALLMMVTLKKLAST-GCTLLFTINQSSTEVFG----LFDRICLLSNGNTLFFGETLAC 335
+ + LK+ T+L T T +F L DR+ L+ G +F G
Sbjct: 190 NAQANIREFLKEYNEERQATVLLT-----THIFDDIATLCDRVLLIDQGQLVFDGTLAQL 244
Query: 336 LQHFSN 341
+ F
Sbjct: 245 QEQFGP 250
|
Length = 325 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-09
Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 45/191 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
PG I+GP+ SGKSTL R I G L ++ G V ++GA + +
Sbjct: 27 PGESLAIIGPSGSGKSTLARLILGLLRPTS---GRVRLDGA--------------DISQW 69
Query: 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254
+ +++ Y L Q +D + + S+++ N L G G+R+
Sbjct: 70 DPNELGDHVGY--LPQ------------DDELFSGSIAE--NILSG----------GQRQ 103
Query: 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 314
R+ +AR L P +L +DEP HLD + + L + G T + ++ T
Sbjct: 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPET--LAS 161
Query: 315 FDRICLLSNGN 325
DRI +L +G
Sbjct: 162 ADRILVLEDGR 172
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 1e-09
Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 26/201 (12%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEM--PY---GSYGFVE 188
G I+G SGKSTLL+ +AG P S G V ++G P + G+V
Sbjct: 29 AGEKVAIIGRVGSGKSTLLKLLAGLYKPTS----GSVLLDGTDIRQLDPADLRRNIGYVP 84
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM--- 245
++ TL T+R+ + A L + A ++D+ NK G
Sbjct: 85 QDVTLF-YGTLRDNITLGAPLA-------DDERILRAAELAGVTDFVNKHPNGLDLQIGE 136
Query: 246 --KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT 303
+GL G+R+ V +AR L+ P +L +DEP +D S + L++L ++ T
Sbjct: 137 RGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIIT 196
Query: 304 INQSSTEVFGLFDRICLLSNG 324
S + L DRI ++ +G
Sbjct: 197 HRPS---LLDLVDRIIVMDSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 54/211 (25%), Positives = 83/211 (39%), Gaps = 31/211 (14%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
K+L+V+ K + + G ++G + SGKSTL RAI G G
Sbjct: 5 KNLSVSFPTGGGSV-KALDDVSFSIKKGETLGLVGESGSGKSTLARAILG---LLKPTSG 60
Query: 169 EVFVNG-AKSEMPYGSYGFVERETTLI-----GSL----TVREYLYYSALLQLPGF-FCQ 217
+ +G ++ +E ++ SL T+ E + +
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEA 120
Query: 218 RKNVVEDAIHAMSLSD-----YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFID 272
RK V + + L + Y ++L GG +R+RV IAR L + P +L D
Sbjct: 121 RKEAVLLLLVGVGLPEEVLNRYPHELSGG----------QRQRVAIARALALNPKLLIAD 170
Query: 273 EPLYHLDSVSALLMMVTLKKLAS-TGCTLLF 302
EP LD ++ LKKL G TLLF
Sbjct: 171 EPTSALDVSVQAQILDLLKKLQEELGLTLLF 201
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 2e-09
Identities = 55/235 (23%), Positives = 109/235 (46%), Gaps = 25/235 (10%)
Query: 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163
A++ K+L KG+R D + ++G + ++GP +GK+T + G +P
Sbjct: 2 ATLTAKNLAKAYKGRRVVEDVSLTVNSG-----EIVGLLGPNGAGKTTTFYMVVGIVPRD 56
Query: 164 ARMYGEVFVNGAK-SEMPYGS-----YGFVERETTLIGSLTVREYLYYSALLQLPGFFC- 216
A G + ++ S +P + G++ +E ++ L+V + L A+LQ+
Sbjct: 57 A---GNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSA 111
Query: 217 -QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPL 275
QR++ + + + + + + L GERRRV IAR L P + +DEP
Sbjct: 112 EQREDRANELMEEFHIEHLRDSM------GQSLSGGERRRVEIARALAANPKFILLDEPF 165
Query: 276 YHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
+D +S + + ++ L +G +L T + + E + +R ++S G+ + G
Sbjct: 166 AGVDPISVIDIKRIIEHLRDSGLGVLIT-DHNVRETLAVCERAYIVSQGHLIAHG 219
|
Length = 241 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 2e-09
Identities = 53/215 (24%), Positives = 91/215 (42%), Gaps = 54/215 (25%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
PG I+G + SGKSTLL+ + G G + ++G + I
Sbjct: 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ---GRILLDG--------------VDLNDI 540
Query: 195 GSLTVREYLYYSALLQLPGFFCQ--RKNV--------VEDAIHAMSLSDYANKLIGGHCY 244
++R + Y +LQ P F R+N+ E+ I A +L G H +
Sbjct: 541 DLASLRRQVGY--VLQDPFLFSGSIRENIALGNPEATDEEIIEAA-------QLAGAHEF 591
Query: 245 MKGLPC---------------GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT 289
++ LP G+R+R+ +AR L+ +P +L +DE LD + +++
Sbjct: 592 IENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN 651
Query: 290 LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
L ++ G T++ ++ ST DRI +L G
Sbjct: 652 LLQIL-QGRTVIIIAHRLST--IRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 30/206 (14%)
Query: 119 RRYSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG--- 174
+ Y KVV +P G +T I+GP +GKSTLL ++ L + GE+ ++G
Sbjct: 9 KSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDS---GEITIDGLEL 65
Query: 175 --AKSEMPYGSYGFVERETTLIGSLTVRE------YLYYSALLQLPGFFCQRKNVVEDAI 226
S+ +++E + LTVR+ + Y L + + ++ +AI
Sbjct: 66 TSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTK-----EDRRIINEAI 120
Query: 227 HAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 286
+ L D +++ Y+ L G+R+R IA L + +DEPL +LD ++ +
Sbjct: 121 EYLHLEDLSDR------YLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQI 174
Query: 287 MVTLKKLAS----TGCTLLFTINQSS 308
M L++LA T +L IN +S
Sbjct: 175 MKILRRLADELGKTIVVVLHDINFAS 200
|
Length = 252 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 3e-09
Identities = 65/261 (24%), Positives = 112/261 (42%), Gaps = 40/261 (15%)
Query: 86 LPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPA 145
L P E K S+ +++++ + GK+ V+K + PG I+GP+
Sbjct: 309 LDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGKK----PVLKDISFSIEPGEKVAIVGPS 364
Query: 146 KSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSY----GFVERETTLIGSLTVR 200
SGKSTL++ + ++ GE+ ++G ++ S G V ++ L S T+R
Sbjct: 365 GSGKSTLIKLLLRLYDPTS---GEILIDGIDIRDISLDSLRKRIGIVSQDPLLF-SGTIR 420
Query: 201 EYLYYSALLQLPGFFCQRKNVVEDAIHA-----------MSLSDYANKLIGGHCYMKGLP 249
E + R + ++ I +L D + ++G L
Sbjct: 421 ENIALG-----------RPDATDEEIEEALKLANAHEFIANLPDGYDTIVGER--GVNLS 467
Query: 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 309
G+R+R+ IAR L+ P +L +DE LD+ + L+ LKKL TL+ S+
Sbjct: 468 GGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTI 527
Query: 310 EVFGLFDRICLLSNGNTLFFG 330
+ DRI +L NG + G
Sbjct: 528 K---NADRIIVLDNGRIVERG 545
|
Length = 567 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 3e-09
Identities = 63/240 (26%), Positives = 100/240 (41%), Gaps = 29/240 (12%)
Query: 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161
G ++ ++++ T G+ K +K+ N G I+G + SGKSTLL+ +AG
Sbjct: 333 TGQALELRNVSFTYPGQ---QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD 389
Query: 162 HSARMYGEVFVNGAKSEMPYGSYGFVERETTL---IGSLTVREYLYYSALLQLPGFFCQR 218
G + +NG + S E L I LT R +L+ L
Sbjct: 390 PQQ---GSITLNG----VEIASL----DEQALRETISVLTQRVHLFSGTLRDNLRLANPD 438
Query: 219 KNVVE--DAIHAMSLSDYANKLIGG-HCYM----KGLPCGERRRVRIARELVMRPHVLFI 271
+ E A+ + L G + ++ + L GERRR+ +AR L+ + +
Sbjct: 439 ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLL 498
Query: 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLLF-TINQSSTEVFGLFDRICLLSNGNTLFFG 330
DEP LD ++ ++ L + A G TLL T E DRI +L NG + G
Sbjct: 499 DEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRGLER---MDRIIVLDNGKIIEEG 554
|
Length = 573 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 4e-09
Identities = 49/210 (23%), Positives = 79/210 (37%), Gaps = 63/210 (30%)
Query: 99 RKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158
G + +++++T+ R G ++G +GKSTLL+ +AG
Sbjct: 10 SLAYGDRPLLENVSLTLNPGERI--------------G----LVGRNGAGKSTLLKILAG 51
Query: 159 RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQR 218
L + GEV G++ +E L TV +Y+ + GF R
Sbjct: 52 ELEPDS---GEVTRPKGLRV------GYLSQEPPLDPEKTVLDYV-------IEGFGELR 95
Query: 219 KNVVEDAIHAMSLSDYANKL----------IGGHCY-------MKGLPC----------- 250
+ + E L+D ++L + G + GL
Sbjct: 96 ELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLS 155
Query: 251 -GERRRVRIARELVMRPHVLFIDEPLYHLD 279
G RRRV +AR L+ P +L +DEP HLD
Sbjct: 156 GGWRRRVALARALLEEPDLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 6e-09
Identities = 62/261 (23%), Positives = 98/261 (37%), Gaps = 48/261 (18%)
Query: 59 RVEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGK 118
RV + I A P P AV ++ +DL+ G
Sbjct: 299 RVRAAAERIVEVLDAAGPV---------AEGSAPAAGAVGLG--KPTLELRDLSAGYPG- 346
Query: 119 RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE 178
+ V+ + PG I+GP+ SGKSTLL +AG L GEV ++G
Sbjct: 347 ---APPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQ---GEVTLDGVPVS 400
Query: 179 MPYGSY-----GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM---- 229
++ L + TVRE L + R + ++ + A
Sbjct: 401 SLDQDEVRRRVSVCAQDAHLFDT-TVRENLRLA-----------RPDATDEELWAALERV 448
Query: 230 -------SLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
+L D + ++G L GER+R+ +AR L+ +L +DEP HLD+ +
Sbjct: 449 GLADWLRALPDGLDTVLGEGG--ARLSGGERQRLALARALLADAPILLLDEPTEHLDAET 506
Query: 283 ALLMMVTLKKLASTGCTLLFT 303
A ++ L S +L T
Sbjct: 507 ADELLEDLLAALSGRTVVLIT 527
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 6e-09
Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 42/210 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNG-------------AKSEMP 180
G + I+G + +GKSTL+R I G P S G V V+G A+ +
Sbjct: 30 KGEIFGIIGRSGAGKSTLIRCINGLERPTS----GSVLVDGTDLTLLSGKELRKARRRI- 84
Query: 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGF-FCQRKNVVEDAIHAMSLSDYANKLI 239
G + + L+ S TV E + L++ G + + V + + + L D A+
Sbjct: 85 ----GMIFQHFNLLSSRTVFENVALP--LEIAGVPKAEIEERVLELLELVGLEDKADA-- 136
Query: 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-----SVSALLMMVTLKKLA 294
Y L G+++RV IAR L P VL DE LD S+ ALL + ++L
Sbjct: 137 ----YPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDIN-REL- 190
Query: 295 STGCTLLFTINQSSTEVFGLFDRICLLSNG 324
G T++ ++ V + DR+ ++ G
Sbjct: 191 --GLTIVLITHEMEV-VKRICDRVAVMEKG 217
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 7e-09
Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 38/208 (18%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMPYGSYGFVE--RET 191
G + I+G + +GKSTLLR I P S G VFV+G + + ++
Sbjct: 31 KGEIFGIIGYSGAGKSTLLRLINLLERPTS----GSVFVDG-QDLTALSEAELRQLRQKI 85
Query: 192 TLI-------GSLTVREYLYYSALLQLPGFF---CQRKNVVEDAIHAMSLSDYANKLIGG 241
+I S TV E + + L+L G +++ V + + + LSD A++
Sbjct: 86 GMIFQHFNLLSSRTVFENVAFP--LELAGVPKAEIKQR--VAELLELVGLSDKADR---- 137
Query: 242 HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-----SVSALLMMVTLKKLAST 296
Y L G+++RV IAR L P +L DE LD S+ LL + ++L
Sbjct: 138 --YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDIN-REL--- 191
Query: 297 GCTLLFTINQSSTEVFGLFDRICLLSNG 324
G T++ I V + DR+ +L G
Sbjct: 192 GLTIVL-ITHEMEVVKRICDRVAVLDQG 218
|
Length = 339 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 7e-09
Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 32/205 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNG---------AKSEMPYGSY 184
G + I+G + SGKSTLL + G P S GEV NG ++++
Sbjct: 30 KGEIVAIVGSSGSGKSTLLHLLGGLDNPTS----GEVLFNGQSLSKLSSNERAKLRNKKL 85
Query: 185 GFVERETTLIGSLTVREYLYYSALLQLPGFF--CQRKNVVEDAIHAMSLSDYANKLIGGH 242
GF+ + L+ T E + L+ G + K + + + L N
Sbjct: 86 GFIYQFHHLLPDFTALENVAMPLLI---GKKSVKEAKERAYEMLEKVGLEHRINH----- 137
Query: 243 CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---MMVTLKKLASTGCT 299
L GER+RV IAR LV +P ++ DEP +LD+ +A + +M+ L + +T
Sbjct: 138 -RPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTS-- 194
Query: 300 LLFTINQSSTEVFGLFDRICLLSNG 324
F + E+ DR+ + +G
Sbjct: 195 --FLVVTHDLELAKKLDRVLEMKDG 217
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 9e-09
Identities = 59/234 (25%), Positives = 113/234 (48%), Gaps = 40/234 (17%)
Query: 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAG-RLPHS 163
VV K++T +R+ V + + GTM ++GP+ GK+T+LR +AG P
Sbjct: 7 VVLKNIT------KRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTE 60
Query: 164 ARMYGEVFVNG---AKSE-------MPYGSYGFVERETTLIGSLTVREYLYYS-ALLQLP 212
G++F++G M + SY L +++ E + Y +L +P
Sbjct: 61 ----GQIFIDGEDVTHRSIQQRDICMVFQSYA-------LFPHMSLGENVGYGLKMLGVP 109
Query: 213 GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFID 272
+RK V++A+ + L+ + ++ Y+ + G+++RV +AR L+++P VL D
Sbjct: 110 K--EERKQRVKEALELVDLAGFEDR------YVDQISGGQQQRVALARALILKPKVLLFD 161
Query: 273 EPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325
EPL +LD+ M +++L T L+ + +E F + D + +++ G
Sbjct: 162 EPLSNLDANLRRSMREKIRELQQQFNITSLY-VTHDQSEAFAVSDTVIVMNKGK 214
|
Length = 351 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 1e-08
Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 36/155 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-----------AKSEMPYGS 183
G +T ++G GK+TLL+ + G LP + G + ++G A++ + Y
Sbjct: 25 KGEVTCVLGRNGVGKTTLLKTLMGLLPVKS---GSIRLDGEDITKLPPHERARAGIAYVP 81
Query: 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ--RKNVVEDAIHAM--SLSDYANKLI 239
G RE + LTV E L L G R + D I+ + L + +
Sbjct: 82 QG---RE--IFPRLTVEENL-------LTGLAALPRRSRKIPDEIYELFPVLKEMLGRR- 128
Query: 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274
GG L G+++++ IAR LV RP +L +DEP
Sbjct: 129 GGD-----LSGGQQQQLAIARALVTRPKLLLLDEP 158
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 1e-08
Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 33/198 (16%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS---------YGF 186
G M I+G + SGKSTLL I + G+V++NG ++ G+
Sbjct: 24 GKMYAIIGESGSGKSTLLNIIGLLEKFDS---GQVYLNGQETPPLNSKKASKFRREKLGY 80
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVE------DAIHAMSLSDYANKLIG 240
+ + LI + TV E L L L ++ + E +A+ + L+ +
Sbjct: 81 LFQNFALIENETVEENL----DLGLKY---KKLSKKEKREKKKEALEKVGLNLKLKQ--- 130
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
+ L GE++RV +AR ++ P ++ DEP LD + ++ L +L G T+
Sbjct: 131 ---KIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTI 187
Query: 301 LFTINQSSTEVFGLFDRI 318
+ I EV DR+
Sbjct: 188 I--IVTHDPEVAKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-08
Identities = 53/220 (24%), Positives = 99/220 (45%), Gaps = 35/220 (15%)
Query: 448 REWKYYW-------LRLILCMILTLCVGTVFSGLG---HSLSSVVTRVAAIFVFVSFNSL 497
++W YW +R + L VGT+F +G + + + + A++ V F +
Sbjct: 1201 KQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGI 1260
Query: 498 LNIAGVPALMKEIKT--YASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVG 555
N + V ++ +T Y + M+S AL + + Q++ IP++ + + +L+ Y +V
Sbjct: 1261 NNCSTVQPMVAVERTVFYRERAAGMYS-ALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVA 1319
Query: 556 LRDEFSLLMYFV-LNFFMCL-LVNEGLMLV-------VASIWKDVYWSILTLISVHVVMM 606
+ +F ++FF L G+M V VA+I+ ++ + L S
Sbjct: 1320 FEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFS------ 1373
Query: 607 LSAGYFRIRNALPG-PVWTYPISYVAFHTYSIKGLLENEY 645
G+F R +P VW Y I VA+ Y GL+ ++Y
Sbjct: 1374 ---GFFIPRPKIPKWWVWYYWICPVAWTVY---GLIVSQY 1407
|
Length = 1470 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 2e-08
Identities = 43/154 (27%), Positives = 67/154 (43%), Gaps = 26/154 (16%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERET-TL 193
G I+GP +GKSTLL+ +AG L + G V G ++ G+ ++ L
Sbjct: 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLS---GTV-KVGETVKI-----GYFDQHRDEL 397
Query: 194 IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252
TV E L GF + V + + + K + L GE
Sbjct: 398 DPDKTVLEEL-------SEGFPDGDEQEVRAYLGRFGFTGEDQEKPV------GVLSGGE 444
Query: 253 RRRVRIARELVMRPHVLFIDEPLYHLD--SVSAL 284
+ R+ +A+ L+ P++L +DEP HLD S+ AL
Sbjct: 445 KARLLLAKLLLQPPNLLLLDEPTNHLDIESLEAL 478
|
Length = 530 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 2e-08
Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 24/201 (11%)
Query: 121 YSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM 179
Y V + +P G T I+GP GKSTLLR ++ RL A +G V+++G +
Sbjct: 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS-RLMTPA--HGHVWLDGEHIQH 73
Query: 180 PYGS------YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK---NVVEDAIHAMS 230
Y S G + + T G +TV+E + P F RK V A+ A
Sbjct: 74 -YASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATG 132
Query: 231 LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290
++ A++ + L G+R+R IA L ++ +DEP LD + ++ L
Sbjct: 133 ITHLADQSV------DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELL 186
Query: 291 KKLAST-GCTL---LFTINQS 307
+L G TL L +NQ+
Sbjct: 187 SELNREKGYTLAAVLHDLNQA 207
|
Length = 265 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-08
Identities = 57/213 (26%), Positives = 89/213 (41%), Gaps = 50/213 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAK-SEMPYGSY----G 185
G ++GP+ SGKSTL+ I R Y G + ++G + S G
Sbjct: 27 AGETVALVGPSGSGKSTLVNLIP-------RFYDVDSGRILIDGHDVRDYTLASLRRQIG 79
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNV----VEDAIHAMSLSDYANKLIGG 241
V ++ L + TV E + Y R VE+A A + ++ +L G
Sbjct: 80 LVSQDVFLF-NDTVAENIAYG-----------RPGATREEVEEAARAANAHEFIMELPEG 127
Query: 242 HCYMKG-----LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 296
+ + G L G+R+R+ IAR L+ P +L +DE LD+ S L+ L++L
Sbjct: 128 YDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKN 187
Query: 297 GCTL-----LFTINQSSTEVFGLFDRICLLSNG 324
T L TI + DRI +L +G
Sbjct: 188 RTTFVIAHRLSTIENA--------DRIVVLEDG 212
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-08
Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 24/210 (11%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGS 183
V+K N PG I+GP +GK+TL+ + G++ ++G ++ S
Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQK---GQILIDGIDIRDISRKS 74
Query: 184 Y----GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLI 239
G V ++T L S T+ E + V +A D+ KL
Sbjct: 75 LRSMIGVVLQDTFLF-SGTIMENIRLGRPNA-------TDEEVIEAAKEAGAHDFIMKLP 126
Query: 240 GGHCYM-----KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294
G+ + L GER+ + IAR ++ P +L +DE ++D+ + L+ L+KL
Sbjct: 127 NGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKL- 185
Query: 295 STGCTLLFTINQSSTEVFGLFDRICLLSNG 324
G T + ++ ST D+I +L +G
Sbjct: 186 MKGRTSIIIAHRLSTIKNA--DKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 20/198 (10%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG----AKSEMPYGS-YGFVERE 190
G++ ++GP +GK+TLLRAI G L +A G V V G A S V ++
Sbjct: 29 GSLVGLVGPNGAGKTTLLRAINGTLTPTA---GTVLVAGDDVEALSARAASRRVASVPQD 85
Query: 191 TTLIGSLTVR---EYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247
T+L VR E + + + VE A+ ++ +A++ +
Sbjct: 86 TSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV------TS 139
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307
L GER+RV +AR L VL +DEP LD + + +++L G T + I+
Sbjct: 140 LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIH-- 197
Query: 308 STEVFGLF-DRICLLSNG 324
++ + D + LL++G
Sbjct: 198 DLDLAARYCDELVLLADG 215
|
Length = 402 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 3e-08
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 31/208 (14%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
KDL V ++GK+ +++K N G + IMGP SGKSTL I G P G
Sbjct: 7 KDLHVEVEGKK----EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGH-PKYEVTEG 61
Query: 169 EVFVNGAK-SEMPYGSYGFVER----------ETTLIGSLTVREYL--YYSALLQLPGFF 215
E+ +G E+ ER I +T ++L +A G
Sbjct: 62 EILFDGEDILELSPD-----ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGIL 116
Query: 216 CQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274
+ +++ + L ++ + + +G GE++R I + L++ P + +DEP
Sbjct: 117 PEFIKELKEKAELLGLDEEFLERYVN-----EGFSGGEKKRNEILQLLLLEPKLAILDEP 171
Query: 275 LYHLDSVSALLMMV-TLKKLASTGCTLL 301
LD + AL ++ + L G +L
Sbjct: 172 DSGLD-IDALKIVAEGINALREEGRGVL 198
|
Length = 251 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 5e-08
Identities = 48/163 (29%), Positives = 72/163 (44%), Gaps = 32/163 (19%)
Query: 141 IMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI---- 194
+MGP+ GKSTLLR L AR+ GEV + G P V RE ++
Sbjct: 35 LMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYP 94
Query: 195 ---GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS-----------LSDYANKLIG 240
LT+ + + ++L G +K + E A+ L+DY + L G
Sbjct: 95 NPFPHLTIYDNVAIG--VKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSG 152
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
G +R+R+ IAR L M+P +L +DEP ++D V
Sbjct: 153 G----------QRQRLVIARALAMKPKILLMDEPTANIDPVGT 185
|
Length = 253 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 6e-08
Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 19/190 (10%)
Query: 121 YSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKS 177
Y DK VK+ N GT+ ++GP+ GK+T LRAI L AR+ G + ++G
Sbjct: 14 YGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDI 73
Query: 178 EMP-------YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK--NVVEDAIHA 228
P G V ++ +++V + + A L+L G + V E ++
Sbjct: 74 YGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRG 131
Query: 229 MSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL--- 285
+L D + GL G+++R+ IAR L + P +L +DEP LD S
Sbjct: 132 AALWDEVKDRLKTPA--TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIED 189
Query: 286 MMVTLKKLAS 295
+M LKK+ +
Sbjct: 190 LMTDLKKVTT 199
|
Length = 252 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 7e-08
Identities = 61/212 (28%), Positives = 92/212 (43%), Gaps = 16/212 (7%)
Query: 118 KRRYSDKVVKSSNGYAL-PGTMTVIMGPAKSGKSTLLRAIAGRLPHSA---RMYGEVFVN 173
++RY DK+V + + G ++GP +GK+T LR + G A + GE +
Sbjct: 14 EKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPS 73
Query: 174 GAKSEMPYGSYGFVERETTLIGSLTVREYL-YYSALLQLPGFFCQRKNVVEDAIHAMSLS 232
A+ G V + L TVRE L + L + V + L
Sbjct: 74 RAR--HARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARAL--VPPLLEFAKLE 129
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
+ A+ +G L G +RR+ +AR LV P VL +DEP LD + LM L+
Sbjct: 130 NKADAKVGE------LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRS 183
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
L + G T+L T E L DR+C++ G
Sbjct: 184 LLARGKTILLT-THFMEEAERLCDRLCVIEEG 214
|
Length = 306 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 7e-08
Identities = 61/223 (27%), Positives = 93/223 (41%), Gaps = 37/223 (16%)
Query: 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERET-- 191
G I+GP+ SGKSTL R I G P ++ G V ++GA +RET
Sbjct: 342 QAGEALAIIGPSGSGKSTLARLIVGIWPPTS---GSVRLDGA-------DLKQWDRETFG 391
Query: 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP-- 249
IG L L+ + + F +N + I A KL G H + LP
Sbjct: 392 KHIGYLPQDVELFPGTVAENIARF--GENADPEKIIE------AAKLAGVHELILRLPDG 443
Query: 250 -------------CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 296
G+R+R+ +AR L P ++ +DEP +LD + +K L +
Sbjct: 444 YDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKAR 503
Query: 297 GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339
G T++ ++ S + G D+I +L +G FGE L
Sbjct: 504 GITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLAKL 544
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 7e-08
Identities = 54/175 (30%), Positives = 80/175 (45%), Gaps = 20/175 (11%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK---SEMPYG--------SY 184
G V++GP+ +GKS+LLR + L R G + + G S+ P +
Sbjct: 28 GETLVLLGPSGAGKSSLLRVL--NLLEMPRS-GTLNIAGNHFDFSKTPSDKAIRDLRRNV 84
Query: 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY 244
G V ++ L LTV+E L + L Q E + + L YA++ Y
Sbjct: 85 GMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADR------Y 138
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 299
L G+++RV IAR L+M P VL DEP LD ++ +K+LA TG T
Sbjct: 139 PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGIT 193
|
Length = 242 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 7e-08
Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 28/187 (14%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-AKSEMPY----GSYGFVER 189
PG ++G + SGKST+ + +AG + GE+ +G + E+P S V++
Sbjct: 504 PGQRVALVGGSGSGKSTIAKLVAGLYQPWS---GEILFDGIPREEIPREVLANSVAMVDQ 560
Query: 190 ETTLIGSLTVREYLYY-------SALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH 242
+ L TVR+ L + L++ + + D I + Y +L G
Sbjct: 561 DIFLFEG-TVRDNLTLWDPTIPDADLVR-----ACKDAAIHDVITSRP-GGYDAELAEGG 613
Query: 243 CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF 302
+ G G+R+R+ IAR LV P +L +DE LD + ++ L++ GCT +
Sbjct: 614 ANLSG---GQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCII 667
Query: 303 TINQSST 309
++ ST
Sbjct: 668 VAHRLST 674
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 9e-08
Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 40/194 (20%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
KDL V++ GK ++K N G + +MGP SGKSTL + I G P G
Sbjct: 4 KDLHVSVGGKE-----ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH-PKYEVTEG 57
Query: 169 EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA 228
E+ G I L E A L G F + E I
Sbjct: 58 EILFKG-----------------EDITDLPPEE----RARL---GIFLAFQYPPE--IPG 91
Query: 229 MSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV 288
+ +D+ + +G GE++R I + L++ P + +DEP LD + AL ++
Sbjct: 92 VKNADFLRYV------NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLD-IDALRLVA 144
Query: 289 -TLKKLASTGCTLL 301
+ KL G ++L
Sbjct: 145 EVINKLREEGKSVL 158
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 9e-08
Identities = 57/210 (27%), Positives = 87/210 (41%), Gaps = 24/210 (11%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
L V KR +V+K + A G + I+G + SGKST LR I S G
Sbjct: 4 NKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSE---G 60
Query: 169 EVFVNGAKSEMPYGSYG----FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVED 224
+ VNG + G + + L+ + + +++ L +NV+E
Sbjct: 61 SIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN----LWSHMTVLENVMEA 116
Query: 225 AIHAMSLSD---------YANKL-IGGHC---YMKGLPCGERRRVRIARELVMRPHVLFI 271
I + LS Y K+ I Y L G+++RV IAR L M P VL
Sbjct: 117 PIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLF 176
Query: 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
DEP LD ++ +++LA G T++
Sbjct: 177 DEPTSALDPELVGEVLRIMQQLAEEGKTMV 206
|
Length = 257 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 61/247 (24%), Positives = 112/247 (45%), Gaps = 31/247 (12%)
Query: 109 KDLTVTIKGK----RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA 164
++L+ T + + RR + + VK + G I+G SGKSTL + +AG + ++
Sbjct: 8 RNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS 67
Query: 165 RMYGEVFVNGAKSEMPYGSYGFVERETTLI-----GSLTVREYLYYSALLQLPGFFC--- 216
GE+ +N + +G Y F + +I SL R L +L P
Sbjct: 68 ---GEILIND--HPLHFGDYSFRSKRIRMIFQDPNTSLNPR--LRIGQILDFPLRLNTDL 120
Query: 217 ---QRKNVVEDAIHAMSL-SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFID 272
QR+ + + + + L D+AN Y L G+++RV +AR L++RP ++ D
Sbjct: 121 EPEQRRKQIFETLRMVGLLPDHAN------YYPHMLAPGQKQRVALARALILRPKIIIAD 174
Query: 273 EPLYHLD-SVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331
E L LD S+ + L+ + L+ G + ++ + Q + + D++ ++ G + G
Sbjct: 175 EALASLDMSMRSQLINLMLELQEKQGISYIY-VTQHIGMIKHISDQVLVMHEGEVVERGS 233
Query: 332 TLACLQH 338
T L
Sbjct: 234 TADVLAS 240
|
Length = 267 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 39/208 (18%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-------AKSEMPYGSYGFVE 188
G M ++GP+ SGK+TLLR IAG ++ G + +G A+ GFV
Sbjct: 28 GQMVALLGPSGSGKTTLLRIIAGLEHQTS---GHIRFHGTDVSRLHARDR----KVGFVF 80
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA--------MSLSDYANKLIG 240
+ L +TV + + + L LP +R+ AI A + L+ A++
Sbjct: 81 QHYALFRHMTVFDNIAF-GLTVLP----RRERPNAAAIKAKVTQLLEMVQLAHLADR--- 132
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
Y L G+++RV +AR L + P +L +DEP LD+ + L++L L
Sbjct: 133 ---YPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE---EL 186
Query: 301 LFT---INQSSTEVFGLFDRICLLSNGN 325
FT + E + DR+ ++S GN
Sbjct: 187 KFTSVFVTHDQEEAMEVADRVVVMSQGN 214
|
Length = 353 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 25/203 (12%)
Query: 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG-RLPH 162
+++ K+L G+ V+ + PG + I+GP+ SGK+TLLR I P
Sbjct: 2 SAIEVKNLVKKFHGQT-----VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE 56
Query: 163 SARM-YGEVFVNGAKSEMPYGSY--------GFVERETTLIGSLTVREYLYYSALLQLPG 213
+ + G++ ++ A+S GFV + L TV E + + G
Sbjct: 57 AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENI-------IEG 109
Query: 214 FFCQRKNVVEDAIHAMSLSDYANKLIGGH--CYMKGLPCGERRRVRIARELVMRPHVLFI 271
+ E+A A + A + G Y + L G+++RV IAR L MRP V+
Sbjct: 110 PVIVKGEPKEEAT-ARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILF 168
Query: 272 DEPLYHLDSVSALLMMVTLKKLA 294
DEP LD ++ T+++LA
Sbjct: 169 DEPTSALDPELVGEVLNTIRQLA 191
|
Length = 250 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 33/205 (16%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAK 176
KR +V+K + A G + I+G + SGKST LR I P + G + VNG +
Sbjct: 14 KRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSA----GSIRVNGEE 69
Query: 177 SEMPYGSYG------------------FVERETTLIGSLTVREYLYYSALLQLPGFFCQR 218
+ G V + L +TV E + A + + G +
Sbjct: 70 IRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVI-EAPVHVLGV--SK 126
Query: 219 KNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 278
+E A ++ A K ++ G G+++RV IAR L M P V+ DEP L
Sbjct: 127 AEAIERAEKYLAKVGIAEKADAYPAHLSG---GQQQRVAIARALAMEPEVMLFDEPTSAL 183
Query: 279 DS--VSALLMMVTLKKLASTGCTLL 301
D V +L ++ + LA G T++
Sbjct: 184 DPELVGEVLKVM--QDLAEEGRTMV 206
|
Length = 256 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 25/173 (14%)
Query: 119 RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE 178
RR + + VK + G I+G SGKSTL + +AG + ++ GE+ ++
Sbjct: 22 RRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS---GELLIDDHP-- 76
Query: 179 MPYGSYGFVERETTLI-----GSLTVREYLYYSALLQLPGFF-------CQRKNVVEDAI 226
+ +G Y + + +I SL R+ + S +L P + K ++E
Sbjct: 77 LHFGDYSYRSQRIRMIFQDPSTSLNPRQRI--SQILDFPLRLNTDLEPEQREKQIIETLR 134
Query: 227 HAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
L D+A+ Y L G+++R+ +AR L++RP V+ DE L LD
Sbjct: 135 QVGLLPDHASY------YPHMLAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 3e-07
Identities = 55/208 (26%), Positives = 92/208 (44%), Gaps = 31/208 (14%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY---------GF 186
G + I+GP+ +GKSTL++ I RL G + ++G + G
Sbjct: 29 GAIYTIVGPSGAGKSTLIKLI-NRLIDPT--EGSILIDGVD----IKTIDVIDLRRKIGM 81
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGFFCQRKNV-VEDAIHAMSLS-DYANKLIGGHCY 244
V ++ L TV++ + Y +L+ KNV VE + + L+ +YA + +
Sbjct: 82 VFQQPHLFEG-TVKDNIEYGPMLK------GEKNVDVEYYLSIVGLNKEYATRDV----- 129
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTI 304
K L GE +RV IAR L P VL +DEP LD S ++ + KL + + I
Sbjct: 130 -KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWI 188
Query: 305 NQSSTEVFGLFDRICLLSNGNTLFFGET 332
+ + + D L+ G + + +T
Sbjct: 189 THNMEQAKRIGDYTAFLNKGILVEYAKT 216
|
Length = 241 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 5e-07
Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 16/167 (9%)
Query: 138 MTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMP-------YGSYGFVE 188
+T I+GP+ GKSTLLRA+ + AR+ G V ++ P G V
Sbjct: 32 ITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVF 91
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRK--NVVEDAIHAMSLSDYANKLIGGHCYMK 246
++ + +L G Q + VVE ++ +L D + H
Sbjct: 92 QQPNPFPKSIFDNVAFGPRML---GTTAQSRLDEVVEKSLRQAALWDEVKDNL--HKSGL 146
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
L G+++R+ IAR L + P V+ +DEP LD VS + + +++L
Sbjct: 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL 193
|
Length = 251 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 6e-07
Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 38/185 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG---------AKSEMPYGSYG 185
G ++G + SGKSTLL +AG S+ GEV + G A++++ G
Sbjct: 35 RGETIALIGESGSGKSTLLAILAGLDDGSS---GEVSLVGQPLHQMDEEARAKLRAKHVG 91
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
FV + LI +L E + ALL+ ++ + A +L + +G +
Sbjct: 92 FVFQSFMLIPTLNALENVELPALLR-------GESSRQSRNGAKALL----EQLGLGKRL 140
Query: 246 KGLPC----GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
LP GE++RV +AR RP VLF DEP +LD T K+A LL
Sbjct: 141 DHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDR-------QTGDKIAD----LL 189
Query: 302 FTINQ 306
F++N+
Sbjct: 190 FSLNR 194
|
Length = 228 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 6e-07
Identities = 52/208 (25%), Positives = 98/208 (47%), Gaps = 19/208 (9%)
Query: 137 TMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGA----KSEMPYG---SYGFV 187
++T I+GP+ GKST+LR+I L SAR+ G++ ++ + P G V
Sbjct: 31 SVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMV 90
Query: 188 ERETTLIGSLTVREYLYYSALLQLPGFF--CQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
++ ++++ Y A +L G + +VE ++ ++L D + +
Sbjct: 91 FQKPNPFPAMSI--YDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAME 148
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 305
L G+++R+ IAR + ++P V+ +DEP LD +S L + +++L ++ T N
Sbjct: 149 --LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHN 206
Query: 306 -QSSTEVFGLFDRICLLSNGNTLFFGET 332
Q + V D G+ + GET
Sbjct: 207 MQQAARV---SDYTAFFYMGDLVECGET 231
|
Length = 252 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 7e-07
Identities = 59/225 (26%), Positives = 101/225 (44%), Gaps = 28/225 (12%)
Query: 118 KRRYSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGA 175
KR+Y + + + G + +GP +GK+T L+ ++G L P S GEV V G
Sbjct: 28 KRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTS----GEVRVAG- 82
Query: 176 KSEMPYG-SYGFVER-------ETTLIGSLTVREYLYY-SALLQLPGFFCQRKNVVEDAI 226
+P+ F+ R +T L L V + Y +A+ LP + K +++
Sbjct: 83 --LVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPA--RFKKRLDELS 138
Query: 227 HAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 286
+ L + + + + L G+R R IA L+ P +LF+DEP LD V+ +
Sbjct: 139 ELLDLEELLDTPV------RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI 192
Query: 287 MVTLKKL-ASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
LK+ G T+L T + ++ L R+ ++ G L+ G
Sbjct: 193 RNFLKEYNRERGTTVLLT-SHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 7e-07
Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 22/192 (11%)
Query: 121 YSDKVVKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSE 178
Y D+ + + LP G + + G +GK+TLL+ IAG L P GE+ +
Sbjct: 11 YHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEK----GEILFERQSIK 66
Query: 179 MPYGSYG----FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY 234
+Y FV + + LT+RE Y F + + SL
Sbjct: 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDI------HFSPGAVGITELCRLFSLEHL 120
Query: 235 ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294
+ G L G++R+V + R + + + +DEPL LD +S L ++ +++
Sbjct: 121 IDYPCGL------LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHR 174
Query: 295 STGCTLLFTINQ 306
+ G +L T +Q
Sbjct: 175 AKGGAVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 8e-07
Identities = 55/233 (23%), Positives = 91/233 (39%), Gaps = 50/233 (21%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
+D + T + + +K N G + I+GP SGKS+LL A+ G L + G
Sbjct: 4 EDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLS---G 60
Query: 169 EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVV------ 222
V V GS +V +E + + T+RE N++
Sbjct: 61 SVSVP--------GSIAYVSQEPWIQ-NGTIRE------------------NILFGKPFD 93
Query: 223 ----EDAIHAMSLSDYANKLIGGHCYM---KG--LPCGERRRVRIARELVMRPHVLFIDE 273
E I A +L L G KG L G+++R+ +AR + + +D+
Sbjct: 94 EERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDD 153
Query: 274 PLYHLDS-VSALLM-MVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
PL +D+ V + L L + +L T ++ D+I +L NG
Sbjct: 154 PLSAVDAHVGRHIFENCILGLLLNNKTRILVT---HQLQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 8e-07
Identities = 51/185 (27%), Positives = 71/185 (38%), Gaps = 47/185 (25%)
Query: 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
PG ++G +GKSTLLR +AG GE P G++ +E L
Sbjct: 31 FPGAKIGVLGLNGAGKSTLLRIMAGVDKEFE---GEARP------APGIKVGYLPQEPQL 81
Query: 194 IGSLTVRE---------------YLYYSALLQLPGF----FCQRKNVVEDAIHAMSLSDY 234
TVRE + A P + +++ I A D
Sbjct: 82 DPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDL 141
Query: 235 ANKL-IGGHCYMKGLPC------------GERRRVRIARELVMRPHVLFIDEPLYHLD-- 279
++L I M L C GERRRV + R L+ +P +L +DEP HLD
Sbjct: 142 DSQLEIA----MDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAE 197
Query: 280 SVSAL 284
SV+ L
Sbjct: 198 SVAWL 202
|
Length = 556 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 8e-07
Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 20/207 (9%)
Query: 138 MTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG 195
+T ++GP+ GKST LR+I L SAR GE+ G + + RE IG
Sbjct: 49 VTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRRE---IG 105
Query: 196 SLTVREYLY----YSALLQLPGFFCQRKNVVEDAIHAMSLSDYA------NKLIGGHCYM 245
+ + + Y+ + + +R+ V D I SL+ A ++L H
Sbjct: 106 MVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRL---HSSA 162
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 305
L G+++R+ IAR L M+P VL +DEP LD +S + + +L ++ T N
Sbjct: 163 LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHN 222
Query: 306 QSSTEVFGLFDRICLLSNGNTLFFGET 332
+ + DR NG+ + + +T
Sbjct: 223 MQ--QALRVSDRTAFFLNGDLVEYDQT 247
|
Length = 268 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 57/204 (27%), Positives = 89/204 (43%), Gaps = 32/204 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNG-----AKSEMPYGSYG 185
PG + I+G + SGKSTL + I R Y G V V+G A G
Sbjct: 27 PGEVVGIVGRSGSGKSTLTKLIQ-------RFYVPENGRVLVDGHDLALADPAWLRRQVG 79
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
V +E L + ++R+ + L PG +R V +A D+ ++L G+ +
Sbjct: 80 VVLQENVLF-NRSIRDNI----ALADPGMSMER---VIEAAKLAGAHDFISELPEGYDTI 131
Query: 246 -----KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
GL G+R+R+ IAR L+ P +L DE LD S +M + + G T+
Sbjct: 132 VGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDI-CAGRTV 190
Query: 301 LFTINQSSTEVFGLFDRICLLSNG 324
+ ++ ST DRI ++ G
Sbjct: 191 IIIAHRLSTVKNA--DRIIVMEKG 212
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 60/244 (24%), Positives = 104/244 (42%), Gaps = 52/244 (21%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV-NGAKSEMPYG------------ 182
G + V+MG + SGKSTLLRA+ G P S G V V +G S
Sbjct: 50 GEICVLMGLSGSGKSTLLRAVNGLNPVSR---GSVLVKDGDGSVDVANCDAATLRRLRTH 106
Query: 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFF-CQRKNVVEDAIHAMSLSDYANKLIGG 241
V ++ L+ TV E + + L++ G +R+ V++ + + L+ +A++
Sbjct: 107 RVSMVFQQFALLPWRTVEENVAFG--LEMQGMPKAERRKRVDEQLELVGLAQWADR---- 160
Query: 242 HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV-------SALLMMVTLKKLA 294
L G ++RV +AR +L +DEP LD + L + LKK
Sbjct: 161 --KPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKK-- 216
Query: 295 STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSD 354
T++F ++ E + +RI ++ G +QH G P I+ +P++
Sbjct: 217 ----TIVF-VSHDLDEALKIGNRIAIMEGGRI---------IQH----GTPEEIVLNPAN 258
Query: 355 HFLR 358
++
Sbjct: 259 DYVA 262
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 58/218 (26%), Positives = 96/218 (44%), Gaps = 44/218 (20%)
Query: 97 VARKIAGASVVWKDLTVTIK---------GKRRYS-DK-VVKSSNGYAL---PGTMTVIM 142
VA + G S V K+ V + KR S D+ VVK+ + +L G + I+
Sbjct: 257 VAVFMEGVSEVEKECEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIV 316
Query: 143 GPAKSGKSTLLRAIAGRLPHSARMYGEVFV--------------NGAKSEMPYGSYGFVE 188
G + +GK+TL + IAG L ++ GEV V +G Y G +
Sbjct: 317 GTSGAGKTTLSKIIAGVLEPTS---GEVNVRVGDEWVDMTKPGPDGRGRAKRY--IGILH 371
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCY 244
+E L TV + L + L+LP + K A+ + + + A +++ Y
Sbjct: 372 QEYDLYPHRTVLDNLTEAIGLELPDELARMK-----AVITLKMVGFDEEKAEEILDK--Y 424
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
L GER RV +A+ L+ P ++ +DEP +D ++
Sbjct: 425 PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPIT 462
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-06
Identities = 52/191 (27%), Positives = 72/191 (37%), Gaps = 59/191 (30%)
Query: 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
PG ++G +GKSTLLR +AG GE P G++ +E L
Sbjct: 29 FPGAKIGVLGLNGAGKSTLLRIMAGV---DKEFNGEARP------APGIKVGYLPQEPQL 79
Query: 194 IGSLTVRE-------------------YLYYS-------ALLQLPGFFCQRKNVVEDAIH 227
+ TVRE ++ ALL + +++ I
Sbjct: 80 DPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLA-------EQAELQEIID 132
Query: 228 AMSLSDYANKLIGGHCYMKGLPC------------GERRRVRIARELVMRPHVLFIDEPL 275
A D KL M L C GERRRV + R L+ +P +L +DEP
Sbjct: 133 AADAWDLDRKL---EIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPT 189
Query: 276 YHLD--SVSAL 284
HLD SV+ L
Sbjct: 190 NHLDAESVAWL 200
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 25/186 (13%)
Query: 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPY 181
+ +K+ N +T ++GP+ GKSTLLR++ L R+ G+V +G + Y
Sbjct: 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDG---QDIY 71
Query: 182 GSYGFVERETTLIG---------SLTVREYLYYSALLQLPGFFCQRK--NVVEDAIHAMS 230
V +G +++ + + Y +L G +++ +VE+++ +
Sbjct: 72 DKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYG--PRLHGIKDKKELDEIVEESLKKAA 129
Query: 231 LSD-YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL---LM 286
L D ++L H GL G+++R+ IAR L + P VL +DEP LD ++ +
Sbjct: 130 LWDEVKDRL---HDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEEL 186
Query: 287 MVTLKK 292
+ LKK
Sbjct: 187 IQELKK 192
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 61/225 (27%), Positives = 102/225 (45%), Gaps = 25/225 (11%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMY--GEVFVNGAKSEMPYGSYGFVERE-T 191
G+ T ++GP +GKSTLL + G LP R+ G VN + G V ++
Sbjct: 31 GSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGRE-VNAENEKWVRSKVGLVFQDPD 89
Query: 192 TLIGSLTVREYLYYSAL-LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250
+ S TV + + + + + L + + VE+A+ A+ + D+ +K H L
Sbjct: 90 DQVFSSTVWDDVAFGPVNMGLDK--DEVERRVEEALKAVRMWDFRDK-PPYH-----LSY 141
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310
G+++RV IA L M P V+ +DEP+ +LD +M L +L + G T++ +T
Sbjct: 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIV-----ATH 196
Query: 311 VFGLF----DRICLLSNGNTLFFG--ETLACLQHFSNAGFPCPIM 349
L D++ +L G L G L AG P++
Sbjct: 197 DVDLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIVEQAGLRLPLV 241
|
Length = 274 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 37/222 (16%)
Query: 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG--------AK 176
V+K + G + ++G +GKSTL++ IAG +P + G + + G AK
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDS---GTLEIGGNPCARLTPAK 82
Query: 177 SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYAN 236
+ G Y V +E L +L+V+E + L LP S+
Sbjct: 83 AHQ-LGIY-LVPQEPLLFPNLSVKENI----LFGLPK-------------RQASMQKMKQ 123
Query: 237 KLIGGHCYMK------GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290
L C + L +R+ V I R L+ +L +DEP L + +
Sbjct: 124 LLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRI 183
Query: 291 KKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332
++L + G ++F I+ E+ L DRI ++ +G G+T
Sbjct: 184 RELLAQGVGIVF-ISHKLPEIRQLADRISVMRDGTIALSGKT 224
|
Length = 510 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 2e-06
Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 22/210 (10%)
Query: 136 GTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
+T ++GP+ GKST LR + L + G V + G P + ++ +
Sbjct: 31 NEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGM 90
Query: 194 IGS------LTVREYLYYSALLQLPGFFCQRKNVVEDAI-----HAMSLSDYANKLIGGH 242
+ ++ E + Y L+L G + K V+++A+ A + + L H
Sbjct: 91 VFQQPNPFPFSIYENVIYG--LRLAG--VKDKAVLDEAVETSLKQAAIWDEVKDHL---H 143
Query: 243 CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF 302
L G+++RV IAR L ++P V+ +DEP LD +S+ + L +L +L
Sbjct: 144 ESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILV 203
Query: 303 TINQSSTEVFGLFDRICLLSNGNTLFFGET 332
T + D+ GN + F +T
Sbjct: 204 THSMHQASRIS--DKTAFFLTGNLIEFADT 231
|
Length = 252 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 49/224 (21%), Positives = 100/224 (44%), Gaps = 19/224 (8%)
Query: 121 YSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA---GRLPHSARMYGEVFVNGAK 176
Y +K VK+ +T I+GP+ GK+TLLR+I +P R+ G+++ G
Sbjct: 13 YGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIP-GFRVEGKIYFKGQD 71
Query: 177 SEMPYGSYGFVERETTLIGS------LTVREYLYYSALLQLPGFFCQRK--NVVEDAIHA 228
P ++ ++ +++ + + + ++ G + K +VE+++
Sbjct: 72 IYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFG--PRIHGVKSKHKLDRIVEESLKK 129
Query: 229 MSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV 288
+L D + L G+++R+ IAR L + P V+ +DEP LD ++ +
Sbjct: 130 AALWDEVKSELNKPGT--RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEK 187
Query: 289 TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332
L++L+ ++ T N + + D I + G + +G T
Sbjct: 188 LLEELSENYTIVIVTHNIG--QAIRIADYIAFMYRGELIEYGPT 229
|
Length = 250 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 27/187 (14%)
Query: 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGAKS-EMP 180
+V+ N T+T +MGP+ SGKSTLLR L AR+ GEV+++G +M
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76
Query: 181 YGSYGFVERETTL-------IGSLTVREYLYYSAL-LQLPGFFCQRKNV---VEDAIHAM 229
+ R + I +L++ E + AL L+L +K + V A+
Sbjct: 77 VIE---LRRRVQMVFQIPNPIPNLSIFENV---ALGLKLNRLVKSKKELQERVRWALEKA 130
Query: 230 SLSD-YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL---L 285
L D ++L + G G+++R+ IAR L +P VL DEP +LD +
Sbjct: 131 QLWDEVKDRLDAPAGKLSG---GQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIES 187
Query: 286 MMVTLKK 292
+ + LKK
Sbjct: 188 LFLELKK 194
|
Length = 250 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 24/230 (10%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
+DL + G + + + + N A + ++GP +GKSTL R G L ++ G
Sbjct: 7 RDLCYSYSGSK----EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTS---G 59
Query: 169 EVFVNGAK--SEMPYGSYGFV----ERETTLIGSLTVREYLYYSAL-LQLPGFFCQRKNV 221
V + G E FV + I S TV + + + + L L +
Sbjct: 60 SVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHR-- 117
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
V A+H + L + ++ + H L GE++RV IA + M P VL +DEP LD
Sbjct: 118 VSSALHMLGLEELRDR-VPHH-----LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQ 171
Query: 282 SALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
++ L L T G T++F+ +Q V + D I ++ G + +G
Sbjct: 172 GVKELIDFLNDLPETYGMTVIFSTHQLDL-VPEMADYIYVMDKGRIVAYG 220
|
Length = 277 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 2e-06
Identities = 39/161 (24%), Positives = 64/161 (39%), Gaps = 41/161 (25%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK---------SEMPY-GSY 184
G + I GP +GK++LLR +AG A GEV G ++ Y G
Sbjct: 26 AGELVQIEGPNGAGKTSLLRILAGLARPDA---GEVLWQGEPIRRQRDEYHQDLLYLGHQ 82
Query: 185 GFVERETTLIGSLTVREYL-YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC 243
++ E LT E L +Y L + +A+ + L+ + +
Sbjct: 83 PGIKTE------LTALENLRFYQRLHG-----PGDDEALWEALAQVGLAGFED------- 124
Query: 244 YMKGLPC-----GERRRVRIARELVMRPHVLFIDEPLYHLD 279
+P G++RRV +AR + R + +DEP +D
Sbjct: 125 ----VPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161
|
Length = 204 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 3e-06
Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 30/226 (13%)
Query: 119 RRYSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177
+R+ V+ N G ++GP+ SGKST+LR + P G++ V G +
Sbjct: 8 KRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDE---GQIQVEGEQL 64
Query: 178 -EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF---CQRKNVVEDAIH------ 227
MP + V + + +R + + Q F NV E +
Sbjct: 65 YHMPGRNGPLVPADEKHLRQ--MRNKI--GMVFQSFNLFPHKTVLDNVTEAPVLVLGMAR 120
Query: 228 ------AMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
AM L D L G+++RV IAR L MRP V+ DE LD
Sbjct: 121 AEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPE 180
Query: 282 SALLMMVTLKKLAS-TGCTLLFTINQSSTEVFG--LFDRICLLSNG 324
++ +++LAS T+L ++ F DR+C G
Sbjct: 181 LVGEVLNVIRRLASEHDLTMLLVTHEMG---FAREFADRVCFFDKG 223
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 29/225 (12%)
Query: 117 GKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176
KR KVV + G + ++GP +GK+T I G + + G++ ++
Sbjct: 15 KKR----KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS---GKILLDDED 67
Query: 177 -SEMPYGS-----YGFVERETTLIGSLTVREYLYYSALLQL---PGFFCQRKNVVEDAIH 227
+++P G++ +E ++ LTV + + A+L++ +RK ++ +
Sbjct: 68 ITKLPMHKRARLGIGYLPQEASIFRKLTVEDNI--MAVLEIREKDLKKAERKEELDALLE 125
Query: 228 AMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD--SVSALL 285
++ + L GERRRV IAR L P + +DEP +D +V +
Sbjct: 126 EFHITHLRDSKAYS------LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQ 179
Query: 286 MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
++ K L G +L T + + E + DR ++S+G L G
Sbjct: 180 RII--KHLKDRGIGVLIT-DHNVRETLDICDRAYIISDGKVLAEG 221
|
Length = 243 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 3e-06
Identities = 72/278 (25%), Positives = 119/278 (42%), Gaps = 55/278 (19%)
Query: 89 PPLPEGAAVARKIAGASVVWKDLTVTIKGK----RRYSD--KVVKSSNGYALPGTMTVIM 142
PPLPE A V ++ +DL V K RR D + V + G ++
Sbjct: 267 PPLPEDAPVLLEV-------EDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLV 319
Query: 143 GPAKSGKSTLLRAIAGRLPHSARMY--GEVFVNGAKSEM-------------PYGSYGFV 187
G + SGKSTL A+ +P + G+ ++ EM PYGS
Sbjct: 320 GESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGS--LS 377
Query: 188 ERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSL-----SDYANKLIGGH 242
R T +G + + E L + + +R V +A+ + L + Y ++ GG
Sbjct: 378 PRMT--VGQI-IEEGL---RVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGG- 430
Query: 243 CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLMMVTLKKL-ASTGCTL 300
+R+R+ IAR L+++P ++ +DEP LD SV A ++ + L+ L G +
Sbjct: 431 ---------QRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDL-LRDLQQKHGLSY 480
Query: 301 LFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338
LF I+ V L R+ ++ +G + G T A +
Sbjct: 481 LF-ISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFAN 517
|
Length = 534 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 54/201 (26%), Positives = 85/201 (42%), Gaps = 49/201 (24%)
Query: 121 YSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR---LPHSARMYGEVFVNGAK 176
Y DK +K N +T ++GP+ GKSTLLR + R L AR+ GEV ++G
Sbjct: 17 YGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCL-NRMNDLIPGARVEGEVLLDG-- 73
Query: 177 SEMPYGSYGFVERETTLIG---------SLTVREYLYYSALLQLPGFFCQRKN-----VV 222
+ Y V +G +++ + + Y L K+ +V
Sbjct: 74 -KNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLH------GIKDKELDEIV 126
Query: 223 EDAIHAMSL--------SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274
E ++ +L A L GG +++R+ IAR L ++P VL +DEP
Sbjct: 127 ESSLKKAALWDEVKDRLHKSALGLSGG----------QQQRLCIARALAVKPEVLLMDEP 176
Query: 275 LYHLDSVSAL---LMMVTLKK 292
LD +S L ++ LKK
Sbjct: 177 TSALDPISTLKIEELITELKK 197
|
Length = 253 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 5e-06
Identities = 48/211 (22%), Positives = 93/211 (44%), Gaps = 19/211 (9%)
Query: 126 VKSSNGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK------ 176
VK+ +G L PG + G +GKSTL++ ++G PH GE++ +G+
Sbjct: 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGT-WDGEIYWSGSPLKASNI 72
Query: 177 SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVV---EDAIHAMSLSD 233
+ + +E TL+ L+V E ++ + LPG + ++ + + L
Sbjct: 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDA 132
Query: 234 YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
G G+++ V IA+ L + +L +DEP L +++ ++ L
Sbjct: 133 DNVTRPVGD-----YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL 187
Query: 294 ASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
+ G ++ I+ EV + D IC++ +G
Sbjct: 188 KAHGVACVY-ISHKLNEVKAVCDTICVIRDG 217
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 6e-06
Identities = 50/257 (19%), Positives = 88/257 (34%), Gaps = 39/257 (15%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTV---------------IMGPAKS 147
S V K + + ++ + G I+G +
Sbjct: 5 KVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGA 64
Query: 148 GKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSA 207
GKSTLL+ IAG ++ G+V V G + + GF LT RE +Y
Sbjct: 65 GKSTLLKLIAGIYKPTS---GKVKVTGKVAPLIELGAGF-------DPELTGRENIYLRG 114
Query: 208 LLQLPGFFCQRKNVVEDAIHAMS-LSDYANKLIGGHCYMKGLPCGERRRVRIARELVM-- 264
L + G + + D I + L D+ ++ + Y G+ R+A +
Sbjct: 115 L--ILGLTRKEIDEKVDEIIEFAELGDFIDQPVK--TYSSGM------YARLAFSVATHV 164
Query: 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
P +L +DE L D+ + L +L T++ ++ + DR L +G
Sbjct: 165 EPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVL-VSHDLGAIKQYCDRAIWLEHG 223
Query: 325 NTLFFGETLACLQHFSN 341
G + +
Sbjct: 224 QIRMEGSPEEVIPAYEE 240
|
Length = 249 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 6e-06
Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 30/181 (16%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG------AKSEMPYGSYGFVE 188
PG M + G + +GKSTLL+ I G SA G+++ +G E+P F+
Sbjct: 27 PGEMAFLTGHSGAGKSTLLKLICGIERPSA---GKIWFSGHDITRLKNREVP-----FLR 78
Query: 189 RETTLI---GSLTVREYLYYSALLQL-----PGFFCQRKNVVEDAIHAMSLSDYANKLIG 240
R+ +I L + +Y + + L G +R+ V A+ + L D A
Sbjct: 79 RQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR--VSAALDKVGLLDKAKN--- 133
Query: 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
+ L GE++RV IAR +V +P VL DEP +LD + ++ ++ G T+
Sbjct: 134 ---FPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTV 190
Query: 301 L 301
L
Sbjct: 191 L 191
|
Length = 222 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 7e-06
Identities = 61/240 (25%), Positives = 98/240 (40%), Gaps = 38/240 (15%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARM 166
K+L+V+ K V + G + I+G + SGKS L +AI G LP + +
Sbjct: 5 KNLSVSFPTDAGVV-KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIV 63
Query: 167 YGEVFVNG------AKSEMP--YG---SYGFVERETTLIGSLTVREYLYYSALLQLPGFF 215
GE+ +G ++ E+ G + F + T+L +T+ + + L G
Sbjct: 64 GGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL- 122
Query: 216 CQRKNVVEDAIHAMS----------LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265
+K E AI + L Y ++L GG R+RV IA L +
Sbjct: 123 -SKKEAKERAIELLELVGIPDPERRLKSYPHELSGGM----------RQRVMIAMALALN 171
Query: 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNG 324
P +L DEP LD ++ LK+L G L+ I V + DR+ ++ G
Sbjct: 172 PKLLIADEPTTALDVTVQAQILDLLKELQREKGTALIL-ITHDLGVVAEIADRVAVMYAG 230
|
Length = 316 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 7e-06
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 18/198 (9%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS--------YGF 186
G + ++G +GKSTL++ + G + GE+ V+G E+ S G
Sbjct: 29 KGEIHALLGENGAGKSTLMKILFGLYQPDS---GEIRVDGK--EVRIKSPRDAIRLGIGM 83
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246
V + L+ +LTV E + +L L + + LS+ + +
Sbjct: 84 VHQHFMLVPTLTVAENI----ILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA 139
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 306
L GE++RV I + L +L +DEP L A + L++LA+ G T++F I
Sbjct: 140 DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIF-ITH 198
Query: 307 SSTEVFGLFDRICLLSNG 324
EV + DR+ +L G
Sbjct: 199 KLKEVMAIADRVTVLRRG 216
|
Length = 501 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 8e-06
Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNG---------AKSEMPYGSY 184
G M I+G + SGKSTLL + G P S G+V NG AK+E+
Sbjct: 34 EGEMMAIVGSSGSGKSTLLHLLGGLDTPTS----GDVIFNGQPMSKLSSAAKAELRNQKL 89
Query: 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY 244
GF+ + L+ T E + A+ L G + + A+ ++ ++ +
Sbjct: 90 GFIYQFHHLLPDFTALENV---AMPLLIGK-KKPAEINSRALEMLAAVGLEHR---ANHR 142
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
L GER+RV IAR LV P ++ DEP +LD+ +A
Sbjct: 143 PSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 8e-06
Identities = 54/193 (27%), Positives = 80/193 (41%), Gaps = 24/193 (12%)
Query: 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVR 200
++G +GKSTLLR +AG P + G V V G S + GF LT R
Sbjct: 53 LIGRNGAGKSTLLRLLAGIYPPDS---GTVTVRGRVSSLLGLGGGFN-------PELTGR 102
Query: 201 EYLYYSALLQLPGFFCQRKNV--VEDAIHAMS-LSDYANKLIGGHCYMKGLPCGERRRVR 257
E +Y + L G RK + D I S L D+ + +K G + R+
Sbjct: 103 ENIYLNGRLL--G--LSRKEIDEKIDEIIEFSELGDFIDL------PVKTYSSGMKARLA 152
Query: 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317
A + P +L IDE L D+ L++L G T++ ++ + + L DR
Sbjct: 153 FAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVIL-VSHDPSSIKRLCDR 211
Query: 318 ICLLSNGNTLFFG 330
+L G F G
Sbjct: 212 ALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 8e-06
Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 17/237 (7%)
Query: 120 RYSDK-VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKS 177
RY D+ V+K N +T ++G GKSTL ++G L P G V G
Sbjct: 10 RYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQK----GAVLWQG--K 63
Query: 178 EMPYGSYGFVE-RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYAN 236
+ Y G + R+ + ++Y+ + F + V E I + +
Sbjct: 64 PLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEI-TRRVDEALT 122
Query: 237 KLIGGHCYMKGLPC---GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
+ H + + C G+++RV IA LV++ L +DEP LD M+ ++++
Sbjct: 123 LVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRI 182
Query: 294 ASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF---GETLACLQHFSNAGFPCP 347
+ G ++ + + ++ + D + +L G L GE AC + AG P
Sbjct: 183 VAQGNHVIIS-SHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGLTQP 238
|
Length = 271 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 8e-06
Identities = 51/211 (24%), Positives = 86/211 (40%), Gaps = 44/211 (20%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
G + V ++ + I G + VI+GP+ SGKSTLLR I
Sbjct: 12 GPTQVLHNIDLNID------------------QGEVVVIIGPSGSGKSTLLRCINKLEEI 53
Query: 163 SARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVV 222
++ G++ V+G K P ER + +++ + L L +NV+
Sbjct: 54 TS---GDLIVDGLKVNDPKVD----ERLIRQEAGMVFQQFYLFPHLTAL-------ENVM 99
Query: 223 EDAIHAMSLS-----DYANKLIG-------GHCYMKGLPCGERRRVRIARELVMRPHVLF 270
+ S A +L+ H Y L G+++RV IAR L ++P ++
Sbjct: 100 FGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLML 159
Query: 271 IDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
DEP LD ++ ++ LA G T++
Sbjct: 160 FDEPTSALDPELRHEVLKVMQDLAEEGMTMV 190
|
Length = 240 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 8e-06
Identities = 49/177 (27%), Positives = 73/177 (41%), Gaps = 41/177 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-----RMYGEVFVN------GAKSEMPYGS 183
PG + I+G + SGK+TLL+ I+GRL A RM + + +
Sbjct: 31 PGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTE 90
Query: 184 YGFVE-------RETTLIGSLTVREYL------YYSALLQLPGFFCQRKNVVEDAIHAMS 230
+GFV R G + E L +Y + + + VE I
Sbjct: 91 WGFVHQNPRDGLRMQVSAGG-NIGERLMAIGARHYGNIRAEAQDWLEE---VE--IDLDR 144
Query: 231 LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLM 286
+ D GG ++R++IAR LV RP ++F+DEP LD SV A L+
Sbjct: 145 IDDLPRTFSGGM----------QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL 191
|
Length = 258 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 8e-06
Identities = 51/177 (28%), Positives = 75/177 (42%), Gaps = 41/177 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS----------- 183
PG + I+G + SGKSTLL +AGRL + +GA+ E+ S
Sbjct: 28 PGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTE 87
Query: 184 YGFVE-------RETTLIGSLTVREYL------YYSALLQLPGFFCQRKNVVEDAIHAMS 230
+GFV R G+ + E L +Y + + + VE I
Sbjct: 88 WGFVHQNPRDGLRMRVSAGA-NIGERLMAIGARHYGNIRATAQDWLEE---VE--IDPTR 141
Query: 231 LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLM 286
+ D GG ++R++IAR LV RP ++F+DEP LD SV A L+
Sbjct: 142 IDDLPRAFSGGM----------QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL 188
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 9e-06
Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 26/182 (14%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAI-AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
G + GP+ +GKSTLL+++ A LP S R+ V GA ++ S RE
Sbjct: 33 AGECVALSGPSGAGKSTLLKSLYANYLPDSGRIL--VRHEGAWVDLAQAS----PREVLE 86
Query: 194 IGSLTVREYLYYSALLQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGG----------- 241
+ T+ Y S L+ +P VV + + + A +
Sbjct: 87 VRRKTIG---YVSQFLRVIPRVSA--LEVVAEPLLERGVPREAARARARELLARLNIPER 141
Query: 242 --HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 299
H GE++RV IAR + +L +DEP LD+ + +++ + + + G
Sbjct: 142 LWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAA 201
Query: 300 LL 301
L+
Sbjct: 202 LI 203
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 9e-06
Identities = 48/211 (22%), Positives = 84/211 (39%), Gaps = 39/211 (18%)
Query: 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMP------YGSYGFVERETTL 193
++GP +GKSTLL +AG LP S G + G + +Y +++T
Sbjct: 27 LVGPNGAGKSTLLARMAGLLPGS----GSIQFAGQPLEAWSAAELARHRAY-LSQQQTPP 81
Query: 194 IGSLTVREYL--YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251
++ V +YL + + + + + A+ L D + + L G
Sbjct: 82 F-AMPVFQYLTLHQPDKTRT----EAVASALNEVAEALGLDDKLGRSVN------QLSGG 130
Query: 252 ERRRVRIAREL-----VMRPH--VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT- 303
E +RVR+A + + P +L +DEP+ LD + L +L G ++ +
Sbjct: 131 EWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSS 190
Query: 304 --INQSSTEVFGLFDRICLLSNGNTLFFGET 332
+N + DR+ LL G L G
Sbjct: 191 HDLNHTLRHA----DRVWLLKQGKLLASGRR 217
|
Length = 248 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 9e-06
Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 32/168 (19%)
Query: 130 NGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-MP---YG 182
N L + ++GP +GK+T+ + G + G + + G E +P
Sbjct: 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTG---GTILLRGQHIEGLPGHQIA 78
Query: 183 SYGFVE--------RETTLIGSLTVREYLY-----YSALLQLPGFFCQRKNVVEDAIH-- 227
G V RE T+I +L V ++ +S LL+ P F ++ A
Sbjct: 79 RMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWL 138
Query: 228 -AMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274
+ L ++AN+ G Y G++RR+ IAR +V +P +L +DEP
Sbjct: 139 ERVGLLEHANRQAGNLAY------GQQRRLEIARCMVTQPEILMLDEP 180
|
Length = 255 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 47/190 (24%), Positives = 76/190 (40%), Gaps = 49/190 (25%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
+ L+V+ G K + + Y PG + VI+GP +GK+T++ I G+ G
Sbjct: 6 EGLSVSFDGF-----KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDE---G 57
Query: 169 EVFVNGAK-SEMPYGSYGFVERETTLIG------------SLTVREYLYYSALLQLPG-- 213
V G + +P E + G +LTV E L L LP
Sbjct: 58 SVLFGGTDLTGLP-------EHQIARAGIGRKFQKPTVFENLTVFENL----ELALPRDK 106
Query: 214 -----FFCQRKNVVEDAIHAM----SLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264
F + +D I + L+D A++L G L G+++ + I L+
Sbjct: 107 SVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAG------LLSHGQKQWLEIGMLLMQ 160
Query: 265 RPHVLFIDEP 274
P +L +DEP
Sbjct: 161 DPKLLLLDEP 170
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 1e-05
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307
L GER+ V IAR L +L +DEP L + +++L + G ++F I+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIF-ISHR 141
Query: 308 STEVFGLFDRICLLSNG 324
EVF + DR+ +L +G
Sbjct: 142 LDEVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 39/162 (24%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK--SEMPYGSYGFVERETT 192
PG + V++GP +GK+TL+ I G+ GEV +G +++P E
Sbjct: 30 PGELRVLIGPNGAGKTTLMDVITGKTRPQE---GEVLFDGDTDLTKLP-------EHRIA 79
Query: 193 LIG------------SLTVREYLYYSALLQLPGFF---CQR-----KNVVEDAIHAMSLS 232
G +LTVRE L AL + F R + +++ + + L
Sbjct: 80 RAGIGRKFQKPTVFENLTVRENLEL-ALNRDKSVFASLFARLRAEERRRIDELLATIGLG 138
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274
D ++L L G+++ + I L P +L +DEP
Sbjct: 139 DERDRLAA------LLSHGQKQWLEIGMLLAQDPKLLLLDEP 174
|
Length = 249 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 1e-05
Identities = 55/222 (24%), Positives = 93/222 (41%), Gaps = 53/222 (23%)
Query: 110 DLTVTIKGKRRYSDKVVKSSNGYAL---------PGTMTVIMGPAKSGKSTLLRAIAGRL 160
+ VTI+ + D + S +G L G ++GP+ +GK++LL A+ G L
Sbjct: 345 NDPVTIEAE----DLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400
Query: 161 PHSARMYGEVFVNGAK-SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ-- 217
P+ G + +NG + E+ S+ R++L S + Q P
Sbjct: 401 PYQ----GSLKINGIELRELDPESW---------------RKHL--SWVGQNPQLPHGTL 439
Query: 218 RKNV-----------VEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGERRRVRIARE 261
R NV ++ A+ +S++ L G GL G+ +R+ +AR
Sbjct: 440 RDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARA 499
Query: 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT 303
L+ +L +DEP LD+ S L+M L + TL+ T
Sbjct: 500 LLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVT 541
|
Length = 588 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
KDL V+++ K ++K N G + IMGP SGKSTL + IAG P G
Sbjct: 4 KDLHVSVEDKE-----ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH-PSYEVTSG 57
Query: 169 EVFVNG 174
+ G
Sbjct: 58 TILFKG 63
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 52/215 (24%), Positives = 83/215 (38%), Gaps = 54/215 (25%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAK-SEMPYGSY----G 185
PG ++G + GKST++ + R Y GE+ ++G ++ G
Sbjct: 28 PGKTVALVGSSGCGKSTVVSLLE-------RFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA----------MSLSDYA 235
V +E L T+ E + Y E+ A MSL D
Sbjct: 81 LVSQEPVLF-DGTIAENIRYGK----------PDATDEEVEEAAKKANIHDFIMSLPDGY 129
Query: 236 NKLIGGH-CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294
+ L+G + G G+++R+ IAR L+ P +L +DE LD+ S L+ L +
Sbjct: 130 DTLVGERGSQLSG---GQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM 186
Query: 295 STGCTL-----LFTINQSSTEVFGLFDRICLLSNG 324
T+ L TI + D I +L NG
Sbjct: 187 KGRTTIVIAHRLSTIRNA--------DLIAVLQNG 213
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 25/158 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----VNGAKSEMPYGSYGFVER 189
G I GP+ GKSTLL+ +A + ++ G + V+ K E + +
Sbjct: 28 AGEFIAITGPSGCGKSTLLKIVASLISPTS---GTLLFEGEDVSTLKPEAYRQQVSYCAQ 84
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVED----AIHAMSLSDYANKLIGGHCYM 245
L G TV + L + ++ R ++ A+ L+ +L G
Sbjct: 85 TPALFGD-TVEDNLIFPWQIRNRRP--DRAAALDLLARFALPDSILTKNITELSG----- 136
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
GE++R+ + R L P +L +DE LD +
Sbjct: 137 -----GEKQRIALIRNLQFMPKILLLDEITSALDESNK 169
|
Length = 223 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 33/171 (19%)
Query: 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHS----ARMYGEVFVNGAKSEMPYGS------ 183
P ++T +GP+ GKST+LR + R+ H AR+ GEV ++G E YG
Sbjct: 28 EPRSVTAFIGPSGCGKSTVLRTL-NRM-HEVIPGARVEGEVLLDG---EDLYGPGVDPVA 82
Query: 184 ----YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK--NVVEDAIHAMSL----SD 233
G V + ++++R+ + A L+L G ++ +VE ++ +L D
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNV--VAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD 140
Query: 234 YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284
+K GG GL G+++R+ IAR + + P VL +DEP LD +S L
Sbjct: 141 RLDK-PGG-----GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTL 185
|
Length = 258 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 63/258 (24%), Positives = 105/258 (40%), Gaps = 44/258 (17%)
Query: 86 LPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPA 145
L SPP + A + A V ++++T G+ R + S + PG ++G +
Sbjct: 311 LDSPPEKDTGTRAIERARGDVEFRNVTFRYPGRDR---PALDSISLVIEPGETVALVGRS 367
Query: 146 KSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY---------GFVERETTLIGS 196
SGKSTL+ I + G++ ++G Y V ++ L
Sbjct: 368 GSGKSTLVNLIPRFYEPDS---GQILLDG----HDLADYTLASLRRQVALVSQDVVLFND 420
Query: 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG-----LPCG 251
T+ + Y Q + +E A+ A D+ +KL G G L G
Sbjct: 421 -TIANNIAYGRTEQAD------RAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473
Query: 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL-----LFTINQ 306
+R+R+ IAR L+ +L +DE LD+ S L+ L++L TL L TI +
Sbjct: 474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEK 533
Query: 307 SSTEVFGLFDRICLLSNG 324
+ DRI ++ +G
Sbjct: 534 A--------DRIVVMDDG 543
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 64/225 (28%), Positives = 97/225 (43%), Gaps = 34/225 (15%)
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
Y V+K+ + G + + G SGKS+LL I G L S G++ +G S P
Sbjct: 437 YVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSE---GKIKHSGRISFSP 493
Query: 181 YGSY---GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANK 237
S+ G + ++ + G L+ EY Y S + CQ + ED ++ + K
Sbjct: 494 QTSWIMPGTI-KDNIIFG-LSYDEYRYTSVIKA-----CQLE---ED------IALFPEK 537
Query: 238 ----LIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL-LMMVTLKK 292
L G + G G+R R+ +AR + + +D P HLD V+ + L K
Sbjct: 538 DKTVLGEGGITLSG---GQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCK 594
Query: 293 LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337
L S +L T S E D+I LL G F+G T + LQ
Sbjct: 595 LMSNKTRILVT---SKLEHLKKADKILLLHEGVCYFYG-TFSELQ 635
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-05
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLD--SVSAL 284
GE+ R+ +A+ L+ P++L +DEP HLD S+ AL
Sbjct: 74 GEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEAL 109
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 3e-05
Identities = 57/228 (25%), Positives = 82/228 (35%), Gaps = 58/228 (25%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY- 167
++LTV V+ + PG + I+G + SGKSTL A+ G LP R+
Sbjct: 9 ENLTVEFATDGGRVP-AVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITS 67
Query: 168 GEVFVNGA------KSEM--------------PYGSY------GFVERETTLIGSLTVRE 201
GEV ++G + EM P S G RE + R
Sbjct: 68 GEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRA 127
Query: 202 YLYYSAL-----LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256
A+ + LP Y ++L GG R+RV
Sbjct: 128 EARKRAVELLEQVGLP--------------DPERRDRYPHQLSGG----------MRQRV 163
Query: 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFT 303
IA L ++P +L DEP LD + ++ LK L G +LF
Sbjct: 164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFI 211
|
Length = 539 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 78/277 (28%), Positives = 116/277 (41%), Gaps = 77/277 (27%)
Query: 81 LNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKR-RY---SDKVVKSSNGYALPG 136
LNS P+ P G A ++ GA +T + R RY S +V+ + N PG
Sbjct: 435 LNS---PTEPRSAGLAALPELRGA--------ITFENIRFRYAPDSPEVLSNLNLDIKPG 483
Query: 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGA----------KSEMPYG 182
I+GP+ SGKSTL + + R+Y G+V V+G + +M
Sbjct: 484 EFIGIVGPSGSGKSTLTKLLQ-------RLYTPQHGQVLVDGVDLAIADPAWLRRQM--- 533
Query: 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH 242
G V +E L S ++R+ + C E IHA KL G H
Sbjct: 534 --GVVLQENVLF-SRSIRDNIA----------LCNPGAPFEHVIHAA-------KLAGAH 573
Query: 243 CYMKGLP---------------CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 287
++ LP G+R+R+ IAR LV P +L DE LD S L+M
Sbjct: 574 DFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIM 633
Query: 288 VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324
++++ G T++ ++ ST V DRI +L G
Sbjct: 634 RNMREI-CRGRTVIIIAHRLST-VRAC-DRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 44/210 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNG---AKSEMPY--GSYG 185
G I+GP+ SGKST+LR + R Y G + ++G + + + G
Sbjct: 26 AGKKVAIVGPSGSGKSTILRLLF-------RFYDVSSGSILIDGQDIREVTLDSLRRAIG 78
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNV----VEDA-----IHA--MSLSDY 234
V ++T L T+ + Y R + V +A IH M D
Sbjct: 79 VVPQDTVLFND-TIGYNIRYG-----------RPDATDEEVIEAAKAAQIHDKIMRFPDG 126
Query: 235 ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294
+ ++G L GE++RV IAR ++ P +L +DE LD+ + + L+ +
Sbjct: 127 YDTIVGERGLK--LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDV- 183
Query: 295 STGCTLLFTINQSSTEVFGLFDRICLLSNG 324
S G T + ++ ST V D+I +L +G
Sbjct: 184 SKGRTTIVIAHRLSTIVNA--DKIIVLKDG 211
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 34/205 (16%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PY---GSYGFVER 189
PG I+G SGKSTLL+ + G + G V ++G P + G+V +
Sbjct: 490 PGEKVAIIGRIGSGKSTLLKLLLGLYQPTE---GSVLLDGVDIRQIDPADLRRNIGYVPQ 546
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVED-----AIHAMSLSDYANKLIGGHCY 244
+ L T+R+ + A +D A ++++ + G
Sbjct: 547 DPRLF-YGTLRDNIALGAPY------------ADDEEILRAAELAGVTEFVRRHPDGLDM 593
Query: 245 M-----KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 299
+ L G+R+ V +AR L+ P +L +DEP +D+ S LK+ + G T
Sbjct: 594 QIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKT 652
Query: 300 LLFTINQSSTEVFGLFDRICLLSNG 324
L+ +++S + L DRI ++ NG
Sbjct: 653 LVLVTHRTS--LLDLVDRIIVMDNG 675
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 25/157 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G +T ++G SGKSTLL+ + GR H GE+ ++ E + S F + L
Sbjct: 36 AGKVTGLIGHNGSGKSTLLK-MLGR--HQPPSEGEILLDAQPLE-SWSSKAFARKVAYLP 91
Query: 195 GSL------TVRE------YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH 242
L TVRE Y ++ AL + F + VE+AI + L A++L+
Sbjct: 92 QQLPAAEGMTVRELVAIGRYPWHGALGR---FGAADREKVEEAISLVGLKPLAHRLV--- 145
Query: 243 CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
L GER+R IA + L +DEP LD
Sbjct: 146 ---DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
|
Length = 265 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 62/226 (27%), Positives = 96/226 (42%), Gaps = 44/226 (19%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL-----PHSARMYGEVFVNGA-------------K 176
PG +T ++G +GKSTLL+A+AG L P AR+ G+V +NG +
Sbjct: 26 PGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLR 85
Query: 177 SEMPYGS---YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD 233
+ +P + + F RE L+G Y A + G R + A A++L+
Sbjct: 86 AVLPQAAQPAFAFSAREIVLLGR-------YPHA--RRAGALTHRDGEI--AWQALALAG 134
Query: 234 YANKLIGGHCYMKGLPCGERRRVRIAREL---------VMRPHVLFIDEPLYHLDSVSAL 284
A L+G + L GE RV+ AR L P L +DEP LD
Sbjct: 135 -ATALVGRD--VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQH 191
Query: 285 LMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
++ T+++LA + I DRI +L++G + G
Sbjct: 192 RLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHG 237
|
Length = 272 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 31/156 (19%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMP---------YGSYG 185
G + ++G + GKSTLLR +AG +A G++ ++G S +P + SY
Sbjct: 45 GEIFALLGASGCGKSTLLRMLAGFEQPTA---GQIMLDGVDLSHVPPYQRPINMMFQSYA 101
Query: 186 FVERETTLIGSLTVREYLYYSALLQ--LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC 243
L +TV + + + L Q LP + + V + + + + ++A + H
Sbjct: 102 -------LFPHMTVEQNIAF-GLKQDKLPK--AEIASRVNEMLGLVHMQEFAKR--KPH- 148
Query: 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
L G+R+RV +AR L RP +L +DEP+ LD
Sbjct: 149 ---QLSGGQRQRVALARSLAKRPKLLLLDEPMGALD 181
|
Length = 377 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 5e-05
Identities = 51/209 (24%), Positives = 100/209 (47%), Gaps = 30/209 (14%)
Query: 141 IMGPAKSGKSTLLRAIAGRL----PHSARMYGEVFVNGA----------KSEMPYGSYGF 186
IMGP+ SGKSTLL+ + RL ++ G+V G + E+ G
Sbjct: 41 IMGPSGSGKSTLLKVL-NRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEV-----GM 94
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGFFCQR--KNVVEDAIHAMSL-SDYANKLIGGHC 243
V ++ L++ + + Y L+ G +R K +VE+ + + L + ++L
Sbjct: 95 VFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPAS 152
Query: 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT 303
+ G G+++R+ IAR L ++P VL +DEP +D V++ + + +L + ++
Sbjct: 153 QLSG---GQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVI-- 207
Query: 304 INQSSTEVFGLFDRICLLSNGNTLFFGET 332
++ + +V + D + L NG + +G +
Sbjct: 208 VSHNPQQVARVADYVAFLYNGELVEWGSS 236
|
Length = 257 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 5e-05
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 8/104 (7%)
Query: 223 EDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
A+ A+ L+D AN+ + L G+++RV +AR L+ RP +L +DEPL LD+++
Sbjct: 115 LQALAAVGLADRANE------WPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALT 168
Query: 283 ALLMMVTLKKL-ASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325
+ M ++ L G T+L + S E + DR+ L+ G
Sbjct: 169 RIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGK 211
|
Length = 257 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 44/197 (22%), Positives = 74/197 (37%), Gaps = 46/197 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
G ++G + SGKSTLL+ + G L P GE+ ++G P L
Sbjct: 27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQQ----GEITLDGV----PVSDLEKALSS--L 76
Query: 194 IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253
I L R YL+ + L G + GER
Sbjct: 77 ISVLNQRPYLFDTTLRNNLG--------------------------------RRFSGGER 104
Query: 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 313
+R+ +AR L+ ++ +DEP LD ++ ++ + ++ + T + + E
Sbjct: 105 QRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH-- 162
Query: 314 LFDRICLLSNGNTLFFG 330
D+I L NG + G
Sbjct: 163 -MDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 6e-05
Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 30/165 (18%)
Query: 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL---- 193
+T I+GP+ GKST L+ L + EV V G + + + ER L
Sbjct: 35 VTAIIGPSGCGKSTFLKC----LNRMNELESEVRVEG---RVEFFNQNIYERRVNLNRLR 87
Query: 194 -----------IGSLTVREYLYYSALLQLPGFF--CQRKNVVEDAIHAMSLSD-YANKLI 239
+ ++V + + Y +++ G+ + ++VE A+ L D +K+
Sbjct: 88 RQVSMVHPKPNLFPMSVYDNVAYG--VKIVGWRPKLEIDDIVESALKDADLWDEIKHKI- 144
Query: 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284
H L G+++R+ IAR L ++P VL +DEP + LD ++++
Sbjct: 145 --HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASM 187
|
Length = 261 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 7e-05
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310
GE++R+ AR L+ +P +F+DE LD S + LK+L G T++ ++ S
Sbjct: 95 GEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPSLW 151
Query: 311 VFGLFDRICLLSN 323
F DR+ L
Sbjct: 152 KF--HDRVLDLDG 162
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 7e-05
Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 25/181 (13%)
Query: 136 GTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
G +T ++GP+ GKST+LR++ L + G V +G P V R
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR--- 95
Query: 194 IGSL---------TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYA-NKLIGGHC 243
IG + ++ E + + A ++ G+ +VE ++ ++ D +KL
Sbjct: 96 IGMVFQQPNPFPKSIYENIAFGA--RINGYTGDMDELVERSLRKAAVWDECKDKLNESGY 153
Query: 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT 303
+ G G+++R+ IAR + + P V+ +DEP LD +S L + T+ +L FT
Sbjct: 154 SLSG---GQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKN-----FT 205
Query: 304 I 304
I
Sbjct: 206 I 206
|
Length = 269 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 8e-05
Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 11/183 (6%)
Query: 138 MTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG 195
+T I+GP+ GKST ++ + L ++ G V G P + + R+ ++
Sbjct: 35 VTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVF 94
Query: 196 S------LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249
+++ E + Y + +VE A+ +L + GL
Sbjct: 95 QRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSAL--GLS 152
Query: 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN-QSS 308
G+++R+ IAR L ++P VL +DEP LD ++ + + + L S + T N Q +
Sbjct: 153 GGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQA 212
Query: 309 TEV 311
T V
Sbjct: 213 TRV 215
|
Length = 259 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 9e-05
Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 10/200 (5%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRL-PHSARM-YGEVFVNGAKSEMPYGSYGFVERETTL 193
G+ T ++G SGKSTLL+ + G L P ++ G++ V+ + V ++ +
Sbjct: 32 GSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP---VRKKVGV 88
Query: 194 IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG---LPC 250
+ + L+ +L+ F Q + ++ ++ + + K L
Sbjct: 89 VFQFPESQ-LFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSG 147
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310
G+ RRV IA L M P VL +DEP LD + + MM + + +G T++ + +
Sbjct: 148 GQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVL-VTHLMDD 206
Query: 311 VFGLFDRICLLSNGNTLFFG 330
V D + LL G+ + G
Sbjct: 207 VADYADYVYLLEKGHIISCG 226
|
Length = 288 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 20/174 (11%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG--AKSEMPYGSYGFVERETT 192
G ++ G +GK+TLLR +AG L H G++ ++G A ++
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAG-LLHVES--GQIQIDGKTATRGDRSRFMAYLGHLPG 92
Query: 193 LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252
L L+ E L++ L L G + K + A+ + L+ Y + L+ + L G+
Sbjct: 93 LKADLSTLENLHF--LCGLHG--RRAKQMPGSALAIVGLAGYEDTLV------RQLSAGQ 142
Query: 253 RRRVRIARELVMRPHVLF-IDEPLYHLD--SVSALLMMVTLKKLASTGCTLLFT 303
++R+ +AR L + P L+ +DEP +LD ++ + M++ L G L+ T
Sbjct: 143 KKRLALAR-LWLSPAPLWLLDEPYANLDLEGITLVNRMIS-AHLRGGGAALVTT 194
|
Length = 214 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 34/168 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNG----AKSEMPYGSYGFVE 188
++ +GP+ GKST LR L + R+ GE+ ++G K V+
Sbjct: 28 EKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ-------VD 80
Query: 189 RETTLIGSL---------TVREYLYYSALLQLPG-----FFCQRKNVVEDAIHAMSLSDY 234
+G + ++ E + Y L++ G F QR VE+ + +L D
Sbjct: 81 ELRKNVGMVFQRPNPFPKSIFENVAYG--LRVNGVKDNAFIRQR---VEETLKGAALWDE 135
Query: 235 ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
+ + L G+++R+ IAR + + P VL +DEP LD +S
Sbjct: 136 VKDKLKESAF--ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPIS 181
|
Length = 250 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 24/171 (14%)
Query: 138 MTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPYG---------SYGF 186
+T ++GP+ GKSTLLR + L ++ G++ ++G E YG G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG---EDIYGNIDVADLRIKVGM 87
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGFFCQR--KNVVEDAIHAMSLSDYANKLIGGHCY 244
V ++ +++ E + Y L+ G ++ VVE ++ +L D + H +
Sbjct: 88 VFQKPNPF-PMSIYENVAYG--LRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAF 144
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---MMVTLKK 292
GL G+++R+ IAR + M P V+ +DEP LD ++ +M LKK
Sbjct: 145 --GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK 193
|
Length = 249 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 17/204 (8%)
Query: 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-----MPYGSYGFVERETT 192
+T ++G + GKST LR A++ G V + G + + G V ++
Sbjct: 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN 89
Query: 193 LIGSLTVREYLYYSALLQLPGFFCQRKN---VVEDAIHAMSL-SDYANKLIGGHCYMKGL 248
+ ++ E + Y+ +L G + +V D + + L + +KL + G
Sbjct: 90 VFVK-SIYENISYAP--KLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSG- 145
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308
G+++R+ IAR L ++P +L +DEP LD +S+ ++ LK+L+ ++ T N
Sbjct: 146 --GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQ 203
Query: 309 TEVFGLFDRICLLSNGNTLFFGET 332
+ D G + FGE+
Sbjct: 204 GKRVA--DYTAFFHLGELIEFGES 225
|
Length = 246 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 18/186 (9%)
Query: 121 YSDKVVKSSNGYALP---GTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGA 175
Y +K ++ N LP +T ++GP+ GKST LR + L + ++ GEV ++G
Sbjct: 14 YGEK--QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGK 71
Query: 176 K-SEMPYGSYGFVERETTLIG-----SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM 229
+ +R + +++ + + Y + + +VE A+
Sbjct: 72 NIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKA 131
Query: 230 SLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---M 286
+L D + L G+++R+ IAR + ++P V+ +DEP LD +S L +
Sbjct: 132 ALWDEVKDDLKKSAL--KLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDL 189
Query: 287 MVTLKK 292
MV LKK
Sbjct: 190 MVELKK 195
|
Length = 251 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 56/203 (27%), Positives = 83/203 (40%), Gaps = 29/203 (14%)
Query: 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG--------FVERETT 192
I+G SGKSTL + G L G+V V+G + G F ET
Sbjct: 33 IIGKNGSGKSTLALHLNGLLRPQK---GKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQ 89
Query: 193 LIGSLTVREYLYYSALLQLPGFFC----QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248
+G TV E L + P C + + V+ A+ + L Y H K L
Sbjct: 90 FVGR-TVEEDLAFG-----PENLCLPPIEIRKRVDRALAEIGLEKYR------HRSPKTL 137
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308
G+ + V +A L M P L DE LD S + ++ +KKL G T+++ + +
Sbjct: 138 SGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITH--N 195
Query: 309 TEVFGLFDRICLLSNGNTLFFGE 331
E DRI ++ G + GE
Sbjct: 196 LEELHDADRIIVMDRGKIVLEGE 218
|
Length = 274 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 38/184 (20%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK---SEMPYGS--------Y 184
G V++GP+ +GKS+LLR + L R G + + G S+ P
Sbjct: 28 GETLVLLGPSGAGKSSLLRVL--NLLEMPRS-GTLNIAGNHFDFSKTPSDKAIRELRRNV 84
Query: 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA--------MSLSDYAN 236
G V ++ L LTV++ L++ P C+ + +D A + L YA+
Sbjct: 85 GMVFQQYNLWPHLTVQQ-----NLIEAP---CRVLGLSKDQALARAEKLLERLRLKPYAD 136
Query: 237 KLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLMMVTLKKLAS 295
+ + L G+++RV IAR L+M P VL DEP LD ++A ++ + +++LA
Sbjct: 137 R------FPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSI-IRELAE 189
Query: 296 TGCT 299
TG T
Sbjct: 190 TGIT 193
|
Length = 242 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-04
Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 42/201 (20%)
Query: 147 SGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY--------GFV--ERETT-LIG 195
+G++ L RA+ G P S+ GE+ ++G + S +V +R++ L+
Sbjct: 296 AGRTELARALFGARPASS---GEILLDG--KPVRIRSPRDAIKAGIAYVPEDRKSEGLVL 350
Query: 196 SLTVREYLYYSALLQL-PGFFCQRKN---VVEDAIHAM-----SLSDYANKLIGGHCYMK 246
+++ E + ++L + R+ + E I + S L GG+
Sbjct: 351 DMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGN---- 406
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA-LLMMVTLKKLASTGCTLLFTIN 305
+++V +AR L P VL +DEP +D V A + +++LA+ G +L
Sbjct: 407 ------QQKVVLARWLATDPKVLILDEPTRGID-VGAKAEIYRLIRELAAEGKAILMI-- 457
Query: 306 QSST--EVFGLFDRICLLSNG 324
SS E+ GL DRI ++ G
Sbjct: 458 -SSELPELLGLSDRILVMREG 477
|
Length = 500 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 18/186 (9%)
Query: 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSYGFVERETTLIGSLTV 199
++GP +GKSTLL+ I G L ++ GE+ +G + G + L +LT
Sbjct: 31 LLGPNGAGKSTLLKMITGILRPTS---GEIIFDGHPWTRKDLHKIGSLIESPPLYENLTA 87
Query: 200 REYL-YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258
RE L ++ LL LP + +++ ++ + L++ K K G ++R+ I
Sbjct: 88 RENLKVHTTLLGLP------DSRIDEVLNIVDLTNTGKKKA------KQFSLGMKQRLGI 135
Query: 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 318
A L+ P +L +DEP LD + + ++ G T++ + + S EV L D I
Sbjct: 136 AIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHI 194
Query: 319 CLLSNG 324
++S G
Sbjct: 195 GIISEG 200
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 32/160 (20%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G ++G SGKSTL++ + G L P S G++ ++G + ++ L+
Sbjct: 33 GEFVGLIGHTGSGKSTLIQHLNGLLKPTS----GKIIIDGVDITDKKVKLSDIRKKVGLV 88
Query: 195 GSLTVREY-LYYSALLQLPGFFCQRKNVVEDAIH-----AMSL-----SDYANK----LI 239
EY L+ + + F + E+ I AM++ DY +K L
Sbjct: 89 --FQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELS 146
Query: 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
GG ++RRV IA + M P +L +DEP LD
Sbjct: 147 GG----------QKRRVAIAGVVAMEPKILILDEPTAGLD 176
|
Length = 287 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 306
L G+R+R+ +AR L P ++ +DEP +LDS + + + G T++ ++
Sbjct: 472 TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHR 531
Query: 307 SSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAG 343
S D+I +L +G FG L
Sbjct: 532 PS--ALASVDKILVLQDGRIAAFGPREEVLAKVLRPP 566
|
Length = 580 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 2e-04
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN-QSST 309
G+++R+ IAR L +RP V+ +DEP LD +S+ + TL +L ++ T N Q +
Sbjct: 151 GQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAG 210
Query: 310 EVFGLFDRICLLSNGNTLFFGET 332
+ D+ L NG+ + G T
Sbjct: 211 RI---SDQTAFLMNGDLIEAGPT 230
|
Length = 251 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 36/179 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL---------PHSARMYGEVFVNGAKSEMPYGSYG 185
PG + ++G + +GK+TLLR I G P S ++ EV N + +P G Y
Sbjct: 408 PGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKV--EVPKNTVSALIP-GEYE 464
Query: 186 FVERETTLIGSL--TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC 243
E T++ L + +L G Y K
Sbjct: 465 PEFGEVTILEHLRSKTGDLNAAVEILNRAG--------------LSDAVLYRRKF----- 505
Query: 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLL 301
L G++ R ++A+ L RP+VL IDE HLD ++A+ + + +LA G TL+
Sbjct: 506 --SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLI 562
|
Length = 593 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 51/210 (24%), Positives = 80/210 (38%), Gaps = 28/210 (13%)
Query: 141 IMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTV 199
I+G + SGKSTL+ G + + G K ++ L
Sbjct: 57 IIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRR 116
Query: 200 REYLYYSALLQLPGF--FCQRKNVVEDAIH----AMSLSD---------YANKLIGGHCY 244
R S + Q P + F K+ +E I A+ + Y NK+ Y
Sbjct: 117 R----VSMVFQFPEYQLF---KDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSY 169
Query: 245 MK----GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
++ GL G++RRV IA L ++P +L DEP LD MM + + T
Sbjct: 170 LERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKT- 228
Query: 301 LFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
+F I + V + D + ++ G L G
Sbjct: 229 VFVITHTMEHVLEVADEVIVMDKGKILKTG 258
|
Length = 320 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 19/169 (11%)
Query: 138 MTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG 195
+T I+GP+ GKST ++ + ++ + ++ GE+ NG S + G VE IG
Sbjct: 40 VTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG--SNILKGKVDLVELRKN-IG 96
Query: 196 SL---------TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246
+ ++ + + Y + + + +VE ++ ++L D + H
Sbjct: 97 MVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRL--HTQAL 154
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---MMVTLKK 292
L G+++R+ IAR L P VL +DEP LD VS +++ LK+
Sbjct: 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE 203
|
Length = 259 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 18/199 (9%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G + ++G + SGKS AI G L P + GE+ ++G P R I
Sbjct: 12 GEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDG----RPLLPLSIRGRHIATI 67
Query: 195 GS---------LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
T+ + + L L Q + ++ +A+ A+ L D L Y
Sbjct: 68 MQNPRTAFNPLFTMGNHAIET-LRSLGKLSKQARALILEALEAVGLPDPEEVL---KKYP 123
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 305
L G +RV IA L++ P L DEP LD V+ ++ L++L T + I
Sbjct: 124 FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLIT 183
Query: 306 QSSTEVFGLFDRICLLSNG 324
V + D + ++ +G
Sbjct: 184 HDLGVVARIADEVAVMDDG 202
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
L G++RRV +A L M P L DEP LD ++ L G T++
Sbjct: 165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTII 219
|
Length = 305 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 22/197 (11%)
Query: 136 GTMTVIMGPAKSGKSTLL-------RAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVE 188
G + ++G +GK+TLL RA +GR+ G+ + +++ + V
Sbjct: 31 GEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFD----GKDITDWQTAKIMREAVAIVP 86
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSL-SDYANKLIGGHCYMKG 247
+ +TV E L + GFF +R E L + I M G
Sbjct: 87 EGRRVFSRMTVEENL------AMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSG 140
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307
GE++ + I R L+ +P +L +DEP L + + T+++L G T +F + Q+
Sbjct: 141 ---GEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMT-IFLVEQN 196
Query: 308 STEVFGLFDRICLLSNG 324
+ + L DR +L NG
Sbjct: 197 ANQALKLADRGYVLENG 213
|
Length = 237 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 41/245 (16%)
Query: 71 TTPASPSLSKL-NSGSLPSP-PLPEGAAVARKIAGASVVWKDLTVTIKG---KRRYSDKV 125
+ P P KL NS P PLPE A+ + V + I+ KR V
Sbjct: 246 SAPTHPYTQKLLNSEPSGDPVPLPEPASPLLDVEQLQVAFP-----IRKGILKRTVDHNV 300
Query: 126 VKSSNGYAL-PGTMTVIMGPAKSGKST----LLRAIAGRLPHSARMYGEVFVNGA----- 175
V + + L PG ++G + SGKST LLR I + GE++ +G
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ--------GEIWFDGQPLHNL 352
Query: 176 --KSEMPYGS---YGFVERETTLIGSLTVREYLYYSALLQLPGFFC-QRKNVVEDAIHAM 229
+ +P F + ++L L V + + + P QR+ V + +
Sbjct: 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEV 412
Query: 230 SLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLMMV 288
L D + H Y G+R+R+ IAR L+++P ++ +DEP LD +V A ++ +
Sbjct: 413 GL-DPETR----HRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILAL 467
Query: 289 TLKKL 293
LK L
Sbjct: 468 -LKSL 471
|
Length = 529 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 41/120 (34%), Positives = 58/120 (48%), Gaps = 17/120 (14%)
Query: 228 AMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLM 286
A L+DY ++L GG ER+RV IA L+ RP +L DEP LD SV A ++
Sbjct: 147 AKRLTDYPHQLSGG----------ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQIL 196
Query: 287 MVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFP 345
+ L++L LLF I + + V L DR+ ++ NG + E FS P
Sbjct: 197 QL-LRELQQELNMGLLF-ITHNLSIVRKLADRVAVMQNGRCV---EQNRAATLFSAPTHP 251
|
Length = 529 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 42/190 (22%), Positives = 81/190 (42%), Gaps = 27/190 (14%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGA----------KSEMPYGS 183
G++ ++G SGKSTL +A+ G RL A +SE S
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWS 92
Query: 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC 243
+ + + ++G + L+ + + +V A+ + + ++ ++ IG
Sbjct: 93 FPVLVEDVVMMGRYG------HMGWLRRAK--KRDRQIVTAALARVDMVEFRHRQIGE-- 142
Query: 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF- 302
L G+++RV +AR + + V+ +DEP +D + ++ L++L G T+L
Sbjct: 143 ----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVS 198
Query: 303 TINQSSTEVF 312
T N S F
Sbjct: 199 THNLGSVTEF 208
|
Length = 272 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 3e-04
Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 23/174 (13%)
Query: 121 YSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKS 177
Y + + VK N L +T I+GP+ GKST LRAI L S G + +G
Sbjct: 49 YGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG--- 105
Query: 178 EMPYGSYGFVERETTL---IGSL---------TVREYLYYSALLQLPGFFCQRKNVVEDA 225
E YG + E L IG + ++ + + Y L Q + +VE +
Sbjct: 106 EDIYGKF---TDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKS 162
Query: 226 IHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
+ +L D + + + GL G+++R+ +AR L + P +L +DEP LD
Sbjct: 163 LRKAALWDEVSDRLDKNAL--GLSGGQQQRLCVARTLAVEPEILLLDEPTSALD 214
|
Length = 286 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 23/146 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL- 193
PG + ++GP +GKSTL+R + G + G ++R L
Sbjct: 29 PGKILTLLGPNGAGKSTLVRVVLGLVAPDE--------------------GVIKRNGKLR 68
Query: 194 IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253
IG + + YL + L + F R ++ I A LI M+ L GE
Sbjct: 69 IGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAP--MQKLSGGET 126
Query: 254 RRVRIARELVMRPHVLFIDEPLYHLD 279
+RV +AR L+ RP +L +DEP +D
Sbjct: 127 QRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 3e-04
Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 26/158 (16%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY---------GSYGF 186
G +T+I+G GKS+LL AI G + + G+V + P S +
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEM---QTLEGKVHWSNKNESEPSFEATRSRNRYSVAY 83
Query: 187 VERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246
++ L+ + TV E + + + F QR V DA SL + L G
Sbjct: 84 AAQKPWLLNA-TVEENITFGS-----PFNKQRYKAVTDAC---SLQPDIDLLPFGDQTEI 134
Query: 247 G-----LPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
G L G+R+R+ +AR L +++F+D+P LD
Sbjct: 135 GERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALD 172
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 32/204 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGA-----KSEMPYGSYG 185
G I+G + +GKST+LR + R Y G + ++G + + G
Sbjct: 288 LGKTVAIVGESGAGKSTILRLLF-------RFYDVNSGSITIDGQDIRDVTQQSLRRAIG 340
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
V ++T L + Y+ P V A A + D+ L G+
Sbjct: 341 IVPQDTVLFND-----TIAYNIKYGRPD---ATAEEVGAAAEAAQIHDFIQSLPEGYDTG 392
Query: 246 KG-----LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
G L GE++RV IAR ++ P +L +DE LD+ + + L+++++ G T
Sbjct: 393 VGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA-GRTT 451
Query: 301 LFTINQSSTEVFGLFDRICLLSNG 324
L ++ ST + D I +L NG
Sbjct: 452 LVIAHRLSTIIDA--DEIIVLDNG 473
|
Length = 497 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 3e-04
Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 22/155 (14%)
Query: 142 MGPAKSGKSTLLRA------------IAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVER 189
+GP+ GKSTLLR + GRL + R + +N K G +R
Sbjct: 52 IGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGM--VFQR 109
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSL-SDYANKLIGGHCYMKGL 248
S + E + ++ + G+ +VED++ ++ + +KL + G
Sbjct: 110 PNPFPKS--IYENIAFAP--RANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSG- 164
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
G+++R+ IAR + M+P VL +DEP LD +S
Sbjct: 165 --GQQQRLCIARAIAMKPDVLLMDEPCSALDPIST 197
|
Length = 274 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 64/272 (23%), Positives = 100/272 (36%), Gaps = 56/272 (20%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTL---LRAIAGRLPHSAR 165
K+LT GK + G L I+G + +GKS L LR + P S
Sbjct: 4 KNLTKKFDGKEVLKNISFTIEEGEVLG-----ILGRSGAGKSVLMHVLRGMDQYEPTS-- 56
Query: 166 MYGEVFVNGAKSEMPYGSYGFVERETTL-------IGSLTVREY-------LYYSALLQL 211
G + + A E G+VER + + G+L E + +
Sbjct: 57 --GRIIYHVALCE----KCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKR 110
Query: 212 PGFFCQR-------KNVVEDAIHAMSLSDY--------ANKLIG----GHCYM---KGLP 249
QR V+++ + A+ Y A LI H + L
Sbjct: 111 IAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLS 170
Query: 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSS 308
GE++RV +AR+L P + DEP LD +A L+ L++ ++G +++ T
Sbjct: 171 GGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT--SHW 228
Query: 309 TEVFG-LFDRICLLSNGNTLFFGETLACLQHF 339
EV L D+ L NG G + F
Sbjct: 229 PEVIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 59/221 (26%), Positives = 94/221 (42%), Gaps = 26/221 (11%)
Query: 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180
V+K+ N G M I G SGK++LL I G L S G++ +G S
Sbjct: 48 VGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSE---GKIKHSGRISFSS 104
Query: 181 YGSY---GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANK 237
S+ G + +E + G ++ EY Y S + CQ +E+ I D
Sbjct: 105 QFSWIMPGTI-KENIIFG-VSYDEYRYKSVVKA-----CQ----LEEDITKFPEKDNTVL 153
Query: 238 LIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLAST 296
GG L G+R R+ +AR + + +D P +LD + + + + KL +
Sbjct: 154 GEGG----ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMAN 209
Query: 297 GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337
+L T S E D+I +L G++ F+G T + LQ
Sbjct: 210 KTRILVT---SKMEHLKKADKILILHEGSSYFYG-TFSELQ 246
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 53/233 (22%), Positives = 102/233 (43%), Gaps = 19/233 (8%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-----SEMPYGSYGFVER 189
PG ++G +GK+T + + G + G+ V G S++ + + G+ +
Sbjct: 1964 PGECFGLLGVNGAGKTTTFKMLTG---DTTVTSGDATVAGKSILTNISDV-HQNMGYCPQ 2019
Query: 190 ETTLIGSLTVREYLY-YSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248
+ LT RE+LY Y+ L +P ++ V +I ++ LS YA++L G +
Sbjct: 2020 FDAIDDLLTGREHLYLYARLRGVPAEEIEK--VANWSIQSLGLSLYADRLAGTY------ 2071
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308
G +R++ A L+ P ++ +DEP +D + ++ T+ + G ++ T + S
Sbjct: 2072 SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLT-SHSM 2130
Query: 309 TEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAIN 361
E L R+ ++ G G F + ++SP D L +N
Sbjct: 2131 EECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTMKIKSPKDDLLPDLN 2183
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 5e-04
Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 21/176 (11%)
Query: 121 YSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKS 177
Y+D K + + N L ++T ++GP+ GKST LR + L ++ G V G
Sbjct: 17 YTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG--K 74
Query: 178 EMPYGSYGFVE--RETTLIGS------LTVREYLYYSALLQLPGFFCQRK--NVVEDAIH 227
+ ++ +E R+ ++ +++ + + Y ++ G ++K +VE ++
Sbjct: 75 NIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGP--KIHGTKDKKKLDEIVEQSLK 132
Query: 228 AMSL-SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
+L ++ +KL + G G+++R+ IAR L + P+V+ +DEP LD +S
Sbjct: 133 KSALWNEVKDKLNTNALSLSG---GQQQRLCIARTLAIEPNVILMDEPTSALDPIS 185
|
Length = 254 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 6e-04
Identities = 47/148 (31%), Positives = 65/148 (43%), Gaps = 23/148 (15%)
Query: 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG-SLTV 199
++GP GKST+L+ I+G L S+ G VF AK M S V+ G L+
Sbjct: 540 MVGPNGIGKSTILKLISGELQPSS---GTVF-RSAKVRMAVFSQHHVD------GLDLSS 589
Query: 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259
LY PG Q+ H S N + M L G++ RV A
Sbjct: 590 NPLLYMMRCF--PGVPEQKLRA-----HLGSFGVTGNLALQP---MYTLSGGQKSRVAFA 639
Query: 260 RELVMRPHVLFIDEPLYH--LDSVSALL 285
+ +PH+L +DEP H LD+V AL+
Sbjct: 640 KITFKKPHILLLDEPSNHLDLDAVEALI 667
|
Length = 718 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 8e-04
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---MMVTLKK 292
GL G+++R+ IAR L + P VL +DEP LD +S L ++ LKK
Sbjct: 146 GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK 194
|
Length = 250 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 8e-04
Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 29/162 (17%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAKSEMPYGSY-----G 185
PG +T ++GP+ SGKST++ + Y G+V ++G Y
Sbjct: 39 PGEVTALVGPSGSGKSTVVALLE-------NFYQPQGGQVLLDGKPISQYEHKYLHSKVS 91
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
V +E L ++++ + Y L C + V E A A + + ++L G+
Sbjct: 92 LVGQEPVLFAR-SLQDNIAYG----LQS--CSFECVKEAAQKAHA-HSFISELASGYDTE 143
Query: 246 KG-----LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
G L G+++RV IAR L+ P VL +DE LD+ S
Sbjct: 144 VGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES 185
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 14/165 (8%)
Query: 138 MTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG 195
+T +GP+ GKST+LR L R+ G+V +G P V R ++
Sbjct: 38 ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVF 97
Query: 196 ------SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGL 248
++ + + Y A ++ G+ +VE ++ +L D +KL + G
Sbjct: 98 QKPNPFPKSIYDNIAYGA--RINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSG- 154
Query: 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
G+++R+ IAR + ++P V+ +DEP LD +S L + + +L
Sbjct: 155 --GQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL 197
|
Length = 264 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 51/176 (28%), Positives = 73/176 (41%), Gaps = 37/176 (21%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS----YGFVERET 191
G +T IMGP+ GK+TLLR I G++ GE+ +G +P S Y +R +
Sbjct: 33 GKITAIMGPSGIGKTTLLRLIGGQIAPDH---GEILFDG--ENIPAMSRSRLYTVRKRMS 87
Query: 192 TLIGS------LTVREYLYYSAL--LQLPGFFCQRKNVVEDAIHA---MSLSDYANKLIG 240
L S + V + + Y QLP +H+ M L A L G
Sbjct: 88 MLFQSGALFTDMNVFDNVAYPLREHTQLP----------APLLHSTVMMKLE--AVGLRG 135
Query: 241 GHCYMKG-LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS 295
M L G RR +AR + + P ++ DEP D ++ M L KL S
Sbjct: 136 AAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT----MGVLVKLIS 187
|
Length = 269 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
L G+ RRV IA L M P +L +DEP LD +M KKL +G T++
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIV 199
|
Length = 280 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT-LLF 302
L G++R I R LV P +L +DEPL LD ++ L+ + L S G T LLF
Sbjct: 401 SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLF 457
|
Length = 490 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.001
Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 21/179 (11%)
Query: 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF---VNGAKSEMPYGSYGFVERE 190
LP +T I G GKS+LLR IAG + S+ G ++ N PY +Y +
Sbjct: 24 LPSAITYIKGANGCGKSSLLRMIAGIMQPSS---GNIYYKNCNINNIAKPYCTY--IGHN 78
Query: 191 TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250
L +TV E L + + + AIH L D ++ CY L
Sbjct: 79 LGLKLEMTVFENLKFWSE------IYNSAETLYAAIHYFKLHDLLDE----KCY--SLSS 126
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVS-ALLMMVTLKKLASTGCTLLFTINQSS 308
G ++ V IAR + + + +DE +L + LL + + K S G LL + +SS
Sbjct: 127 GMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS 185
|
Length = 195 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
K+L ++ +++K N G + IMGP SGKSTL + IAG P + G
Sbjct: 11 KNLHASVNEN-----EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH-PAYKILEG 64
Query: 169 EVFVNG 174
++ G
Sbjct: 65 DILFKG 70
|
Length = 252 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 32/222 (14%)
Query: 126 VKSSNGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPHSA---RMYG-EVFVNGAKSE 178
VK+ +G AL PG + ++G +GKST+++ + G A G EV NG KS
Sbjct: 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSS 76
Query: 179 MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVE-DAIHAMSLSDYANK 237
G G + +E LI LT+ E + F R+ V I + A+K
Sbjct: 77 QEAG-IGIIHQELNLIPQLTIAENI-----------FLGREFVNRFGRIDWKKMYAEADK 124
Query: 238 LI-------GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL-DSVSALLMMVT 289
L+ + L GE++ V IA+ L V+ +DEP L D+ + L V
Sbjct: 125 LLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRV- 183
Query: 290 LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331
+++L S G +++ I+ E+F + D + + +G F E
Sbjct: 184 IRELKSQGRGIVY-ISHRLKEIFEICDDVTVFRDGQ--FIAE 222
|
Length = 501 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.001
Identities = 45/199 (22%), Positives = 90/199 (45%), Gaps = 15/199 (7%)
Query: 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPY 181
++K+ N ++T ++GP+ GKST +R + L R G ++++G P
Sbjct: 17 HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76
Query: 182 GSYGFVERETTLIGSL------TVREYLYYSALLQLPGFFCQRK--NVVEDAIHAMSLSD 233
+ ++ ++ ++ + + Y L++ G + VE+++ A +L D
Sbjct: 77 VDVVELRKKVGMVFQKPNPFPKSIFDNVAYG--LRIHGEDDEDFIEERVEESLKAAALWD 134
Query: 234 YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293
+ GL G+++R+ IAR + + P V+ +DEP LD +S + + KL
Sbjct: 135 EVKDKLDKSAL--GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL 192
Query: 294 ASTGCTLLFTIN-QSSTEV 311
++ T N Q +T V
Sbjct: 193 KEDYTIVIVTHNMQQATRV 211
|
Length = 250 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 39.3 bits (91), Expect = 0.002
Identities = 33/184 (17%), Positives = 58/184 (31%), Gaps = 63/184 (34%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
PG + +I+GP SGK+TL RA+A L G ++++G ++
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDG----------------EDIL 42
Query: 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254
+ + L + G R
Sbjct: 43 EEVLDQLLLIIVGGKKASGSGELR------------------------------------ 66
Query: 255 RVRIARELVMRPH--VLFIDEPLYHLDSVSALLMM------VTLKKLASTGCTLLFTINQ 306
+R+A L + VL +DE LD+ L++ + L + T++ T N
Sbjct: 67 -LRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125
Query: 307 SSTE 310
Sbjct: 126 EKDL 129
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 42/181 (23%), Positives = 81/181 (44%), Gaps = 42/181 (23%)
Query: 137 TMTVIMGPAKSGKSTLLRAIAGRLP---HSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193
+T ++GP+ SGKST LR++ R+ AR+ G++ G ++
Sbjct: 47 KITALIGPSGSGKSTYLRSL-NRMNDTIDIARVTGQILYRG------------IDINRKE 93
Query: 194 IGSLTVREYLYYSALLQLPGFFCQ--RKNV------------------VEDAIHAMSLSD 233
I +R+++ + Q P F + +N+ VE ++ +L D
Sbjct: 94 INVYEMRKHI--GMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWD 151
Query: 234 YA-NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
+ L + G G+++R+ IAR + ++P +L +DEP LD +S + + T+ +
Sbjct: 152 QVKDDLHKSALTLSG---GQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFE 208
Query: 293 L 293
L
Sbjct: 209 L 209
|
Length = 267 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 51/189 (26%), Positives = 75/189 (39%), Gaps = 49/189 (25%)
Query: 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVR 200
++G + GKSTL R I G ++ GE+ G ER V
Sbjct: 44 LVGESGCGKSTLGRLILGLEEPTS---GEILFEG----KDITKLSKEERRER------VL 90
Query: 201 EYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260
E L + LP F R Y ++L GG +R+R+ IAR
Sbjct: 91 ELL---EKVGLPEEFLYR---------------YPHELSGG----------QRQRIGIAR 122
Query: 261 ELVMRPHVLFIDEPLYHLD-SVSA--LLMMVTLKKLASTGCTLLF-TINQSSTEVFGLFD 316
L + P ++ DEP+ LD SV A L ++ L++ G T LF + + S D
Sbjct: 123 ALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE--ELGLTYLFISHDLSVVRYIS--D 178
Query: 317 RICLLSNGN 325
RI ++ G
Sbjct: 179 RIAVMYLGK 187
|
Length = 268 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.002
Identities = 38/178 (21%), Positives = 68/178 (38%), Gaps = 35/178 (19%)
Query: 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSA 164
V + DL T Y D ++ G G + I+GP GK+T ++ +AG + P
Sbjct: 343 VEYPDLKKT------YGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--- 393
Query: 165 RMYGEVFVNGAKSEMPYGSYG--FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVV 222
G++ ++ SY ++ + TV + L + +
Sbjct: 394 -------DEGSEEDLKV-SYKPQYISPDYDG----TVEDLLRSAIRSAFGSSY-----FK 436
Query: 223 EDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280
+ + ++L D + + L GE +RV IA L + +DEP +LD
Sbjct: 437 TEIVKPLNLEDLLERPVDE------LSGGELQRVAIAAALSREADLYLLDEPSAYLDV 488
|
Length = 591 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.002
Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 25/183 (13%)
Query: 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPYGS 183
V+ S+ +T +GP+ GKST+LR++ L R G V G YG
Sbjct: 24 VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDV---YGK 80
Query: 184 ----------YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD 233
G V ++ S+++ + + + L+L + + V+ A+ +L D
Sbjct: 81 GVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFG--LRLNRYKGDLGDRVKHALQGAALWD 137
Query: 234 -YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---MMVT 289
+KL + G G+++R+ IAR + P VL +DEP LD ++ +MV
Sbjct: 138 EVKDKLKVSGLSLSG---GQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVE 194
Query: 290 LKK 292
LKK
Sbjct: 195 LKK 197
|
Length = 261 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159
KDL V+++ K +++ N PG + IMGP SGKSTL +AGR
Sbjct: 5 KDLHVSVEDK-----AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR 50
|
Length = 248 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 0.002
Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 60/203 (29%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY--------GF 186
G + I G +G++ L A+ G P ++ GE+ ++G + S +
Sbjct: 25 AGEIVGIAGLVGNGQTELAEALFGLRPPAS---GEITLDG--KPVTRRSPRDAIRAGIAY 79
Query: 187 V--ER-ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC 243
V +R L+ L+V E N ++LS L GG+
Sbjct: 80 VPEDRKREGLVLDLSVAE------------------N--------IALSSL---LSGGN- 109
Query: 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFT 303
+++V +AR L P VL +DEP +D + + +++LA G +L
Sbjct: 110 ---------QQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLI 160
Query: 304 INQSST--EVFGLFDRICLLSNG 324
SS E+ GL DRI ++ G
Sbjct: 161 ---SSELDELLGLCDRILVMYEG 180
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 48/215 (22%), Positives = 82/215 (38%), Gaps = 54/215 (25%)
Query: 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPG--------TMTVIMGPAKSGKSTLLRAI--- 156
W D K D V + +AL G ++T ++GP+ GKST LR +
Sbjct: 35 WTDYEFDGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRM 94
Query: 157 -----AGRLPHSARMYG-EVFVNGA-----------------------KSEMPYGSYGFV 187
A R+ S + G +++ +G + + YG
Sbjct: 95 NDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHG 154
Query: 188 ERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247
+ T L+ L R+ +VE ++ +L D N + + G
Sbjct: 155 DINTGLLARLLGRDDKD------------AEDELVERSLRQAALWDEVNDRLDDNAL--G 200
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
L G+++R+ IAR L + P V+ +DEP LD ++
Sbjct: 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIA 235
|
Length = 305 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 16/180 (8%)
Query: 139 TVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGS 196
T ++GP+ GKSTLLR L R+ G++ NG + R+ IG
Sbjct: 35 TALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRK---IGM 91
Query: 197 LTVREYLY----YSALLQLPGFFCQRKN-----VVEDAIHAMSLSDYANKLIGGHCYMKG 247
+ R + Y + P ++ +VE ++ +L D + H
Sbjct: 92 VFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRL--HDSALS 149
Query: 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307
L G+++R+ IAR L + P V+ +DEP LD ++ + ++ L ++ T N
Sbjct: 150 LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQ 209
|
Length = 253 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 27/180 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL--PHSA--RMYGEVFV---NGAKSEMPYGSYGFV 187
G M I+G + SGKSTL+ I G L P S R+ G+ A +++ +GF+
Sbjct: 33 AGEMVAIVGASGSGKSTLMN-ILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFI 91
Query: 188 ERETTLIGSLTVREYLYYSALLQLPGFFC-----QRKNVVEDAIHAMSLSDYANKLIGGH 242
+ L+ LT + + ++P + QR ++ + + L D
Sbjct: 92 FQRYHLLSHLTAAQNV------EVPAVYAGLERKQRLLRAQELLQRLGLEDRVE------ 139
Query: 243 CYMKG-LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLL 301
Y L G+++RV IAR L+ V+ DEP LDS S +M L +L G T++
Sbjct: 140 -YQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVI 198
|
Length = 648 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Query: 221 VVEDAIHAMSL-SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
+VE ++ ++ L + ++L + G G+++R+ IAR + ++P +L +DEP LD
Sbjct: 125 IVEKSLTSVGLWEELGDRLKDSAFELSG---GQQQRLCIARAIAVKPTMLLMDEPCSALD 181
Query: 280 SVSALLMMVTLKKLASTGCTLLFTI---NQSSTEVFGLFDRICLLSNGNTLFFGET 332
V+ ++ +++L FTI S + + DR+ +G + + T
Sbjct: 182 PVATNVIENLIQEL-----KKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTT 232
|
Length = 251 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLD-SVSAL---LMM 287
G+R+R+ IAR L++ P V+ DEP+ LD SV A LMM
Sbjct: 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMM 198
|
Length = 327 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.003
Identities = 58/256 (22%), Positives = 104/256 (40%), Gaps = 68/256 (26%)
Query: 105 SVVWKDLTVTIKGKRRY---SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161
+ +K++++ RY V+K+ + PG I+G SGKS+LL A+
Sbjct: 2 DIEFKNVSL------RYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALF---- 51
Query: 162 HSARMY----GEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF-- 215
R+ G + ++G + + IG +R + S + Q P F
Sbjct: 52 ---RLVELSSGSILIDG--------------VDISKIGLHDLRSRI--SIIPQDPVLFSG 92
Query: 216 CQRKNV----------VEDAIHAMSLSDYANKLIGGHCYM-----KGLPCGERRRVRIAR 260
R N+ + A+ + L ++ L GG + + L G+R+ + +AR
Sbjct: 93 TIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLAR 152
Query: 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF------TINQSSTEVFGL 314
L+ + +L +DE +D + L+ T+++ A CT+L TI S
Sbjct: 153 ALLRKSKILVLDEATASVDPETDALIQKTIRE-AFKDCTVLTIAHRLDTIIDS------- 204
Query: 315 FDRICLLSNGNTLFFG 330
DRI +L G + F
Sbjct: 205 -DRILVLDKGRVVEFD 219
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.004
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 305
K L GE R+ + + L+ P +L +DEP LD S + L L +G TL+ +N
Sbjct: 134 KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLN 193
|
Length = 490 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.004
Identities = 50/190 (26%), Positives = 72/190 (37%), Gaps = 52/190 (27%)
Query: 132 YALPGTMTVIMGPAKSGKSTLLRAIAG-----------------RLPHSA--RMYGEVFV 172
PG I+GP+ SGKSTLLR + G L A R G V
Sbjct: 475 QIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQ 534
Query: 173 NGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS-- 230
NG M G + LT+ E ++ G + I AM
Sbjct: 535 NG--RLMS----GSIFENIAGGAPLTLDEAW---EAARMAGL--------AEDIRAMPMG 577
Query: 231 ----LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 286
+S+ L GG +R+R+ IAR LV +P +L DE LD+ + ++
Sbjct: 578 MHTVISEGGGTLSGG----------QRQRLLIARALVRKPRILLFDEATSALDNRTQAIV 627
Query: 287 MVTLKKLAST 296
+L++L T
Sbjct: 628 SESLERLKVT 637
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.004
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284
GL G+++R+ IAR L + P V+ +DEP LD +S L
Sbjct: 167 GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTL 204
|
Length = 271 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.004
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 251 GERRRVRIARELVMRPHVLFIDEPLYHLD-SVSALLM 286
G ++R++IAR LV P ++F+DEP LD SV A L+
Sbjct: 155 GMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLL 191
|
Length = 258 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.004
Identities = 56/201 (27%), Positives = 88/201 (43%), Gaps = 26/201 (12%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNG------AKSEMPYG--SYGF 186
G + ++G + +GKSTL+R + P S G V V+G + SE+ G
Sbjct: 31 GQIYGVIGASGAGKSTLIRCVNLLERPTS----GSVIVDGQDLTTLSNSELTKARRQIGM 86
Query: 187 VERETTLIGSLTVREYLYYSAL-LQLPGFFCQR-KNVVEDAIHAMSLSDYANKLIGGHCY 244
+ + L+ S TV + AL L+L K V + + + L D + Y
Sbjct: 87 IFQHFNLLSSRTVFGNV---ALPLELDNTPKDEIKRKVTELLALVGLGDKHDS------Y 137
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFT 303
L G+++RV IAR L P VL DE LD + ++ LK++ G T+L
Sbjct: 138 PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILL- 196
Query: 304 INQSSTEVFGLFDRICLLSNG 324
I V + D + ++SNG
Sbjct: 197 ITHEMDVVKRICDCVAVISNG 217
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 723 | |||
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.98 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.98 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.97 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.97 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.97 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.97 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.97 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.97 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.96 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.96 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.96 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.95 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.95 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.95 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.94 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.94 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.94 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.93 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.93 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.93 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.92 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.92 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.92 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.92 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.91 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.9 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.9 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.89 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.89 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.88 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.88 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.88 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.87 | |
| PF01061 | 210 | ABC2_membrane: ABC-2 type transporter; InterPro: I | 99.85 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.84 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.83 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.83 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.82 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.82 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.82 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.8 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.79 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.78 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.78 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.77 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.76 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.76 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.74 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.74 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.74 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.72 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.71 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.7 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.66 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.65 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.61 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.6 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.59 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.56 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.48 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.41 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.38 | |
| TIGR01247 | 236 | drrB daunorubicin resistance ABC transporter membr | 99.36 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.35 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.29 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.29 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.26 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.26 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.25 | |
| TIGR03062 | 208 | pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa | 99.24 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.23 | |
| TIGR00025 | 232 | Mtu_efflux ABC transporter efflux protein, DrrB fa | 99.23 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.21 | |
| TIGR01291 | 253 | nodJ ABC-2 type transporter, NodJ family. Nearly a | 99.21 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.2 | |
| TIGR03861 | 253 | phenyl_ABC_PedC alcohol ABC transporter, permease | 99.19 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.19 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.18 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.17 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.14 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.14 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.12 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.11 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.1 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.09 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.06 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 99.04 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.03 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.02 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.02 | |
| PRK15066 | 257 | inner membrane transport permease; Provisional | 99.0 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.0 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.91 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.9 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.89 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.87 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.79 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.77 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 98.76 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.73 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.72 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.71 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.68 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.68 | |
| COG0842 | 286 | ABC-type multidrug transport system, permease comp | 98.66 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.62 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.59 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.58 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.51 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.47 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.45 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.45 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.44 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.42 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.32 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.32 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.32 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.28 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.27 | |
| TIGR01248 | 152 | drrC daunorubicin resistance protein C. The model | 98.26 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.26 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.23 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.17 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.11 | |
| TIGR03518 | 240 | ABC_perm_GldF gliding motility-associated ABC tran | 98.1 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 98.08 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 98.08 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.08 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.99 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 97.99 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 97.99 | |
| PRK13764 | 602 | ATPase; Provisional | 97.95 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 97.95 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 97.93 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 97.89 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 97.88 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 97.88 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 97.88 | |
| PF12679 | 277 | ABC2_membrane_2: ABC-2 family transporter protein | 97.87 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 97.83 | |
| PF09818 | 448 | ABC_ATPase: Predicted ATPase of the ABC class; Int | 97.83 |
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-105 Score=921.61 Aligned_cols=578 Identities=32% Similarity=0.529 Sum_probs=503.9
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CC
Q 004932 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MP 180 (723)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~--~~ 180 (723)
+..+.|+|++++.+.+....+++|+|||+.++|||++||||||||||||||++|+|+.+.+...+|+|++||++.. ..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~ 102 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSF 102 (613)
T ss_pred cceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhh
Confidence 3568999999998755334688999999999999999999999999999999999999876568999999996533 23
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCcc--chHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF--CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~--~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
++.+|||.|+|.++|++||+|+|.|+|.+++|... .+++++|+++++++||.+++|+++| +...+++||||||||+|
T Consensus 103 ~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig-~~~~rgiSGGErkRvsi 181 (613)
T KOG0061|consen 103 RKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIG-NPGIRGLSGGERKRVSI 181 (613)
T ss_pred hheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceec-CCCCCccccchhhHHHH
Confidence 46789999999999999999999999999999743 3478899999999999999999998 55559999999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHH
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (723)
|.+|++||.||||||||||||+.++.++++.|++++++|+|||+|+|||+.+++++||++++|++|+++|+|+++++.+|
T Consensus 182 a~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~f 261 (613)
T KOG0061|consen 182 ALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEF 261 (613)
T ss_pred HHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCCCchHHHHHHHhcc--hhHHHHhhhccccCCCCCCccccChHHHHHHHHHHHh-cCHHHHHHHHHHHHh
Q 004932 339 FSNAGFPCPIMQSPSDHFLRAINTD--FDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQ-SSADAAAVETMILRL 415 (723)
Q Consensus 339 f~~~g~~~~~~~~p~d~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~s~~~~~~~~~~~~~ 415 (723)
|++.|+|||...||+||++++++.+ .+..... .+.....+.++ .....+.........
T Consensus 262 f~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (613)
T KOG0061|consen 262 FSSLGFPCPELENPADFLLDLLSVDSGTRELEEA-------------------VRIAKLINKFSQTDNLKKTLEALEKSL 322 (613)
T ss_pred HHhCCCCCCCcCChHHHHHHHHccCCCchhHHhH-------------------HHHHHHhhhccccchhhhhHHHHhhhc
Confidence 9999999999999999999998743 1111000 01111122222 110011000000001
Q ss_pred hhccCCCcCCCCCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHH
Q 004932 416 TEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFN 495 (723)
Q Consensus 416 ~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~l~~~~~~i~~r~g~lff~~~~~ 495 (723)
.+ ....+.....+||.|++.|++|.+++.+|||.+.+.|+++.+++|+++|++||+++++..++++|.|++||++.++
T Consensus 323 ~~--~~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~ 400 (613)
T KOG0061|consen 323 ST--SKKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFM 400 (613)
T ss_pred cc--ccccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHH
Confidence 00 1111112278999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-hHHHHHhhHHHHHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHH
Q 004932 496 SLLNIA-GVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCL 574 (723)
Q Consensus 496 ~~~~~~-~~~~~~~er~v~~rE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y~m~Gl~~~~~~F~~f~l~~~~~~ 574 (723)
.|.++. +++.|+.||++|.||+.+|+|+.++||+|++++++|+.++.+++|++|+|||+||+++..+|++|++++++..
T Consensus 401 ~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~ 480 (613)
T KOG0061|consen 401 TFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSS 480 (613)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 888876 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCcCCCCC
Q 004932 575 LVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQ 654 (723)
Q Consensus 575 ~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~w~~yiSp~~Ya~~al~~nef~~~~~~~~~ 654 (723)
+++++++.++++++||...|++++++++++|++|+|||++.++||. |++|++|+|+++|++||+++|||.+....|..
T Consensus 481 ~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~--~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~ 558 (613)
T KOG0061|consen 481 LVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPK--YFRWISYLSYFRYAFEALLINQFSGGSSRCFL 558 (613)
T ss_pred HHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccH--HHHHHHHHhHHHHHHHHHHHHHhhcccccccc
Confidence 9999999999999999999999999999999999999999999996 45679999999999999999999873333422
Q ss_pred ----cccccHHHHHhhhcCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 004932 655 ----VRTISGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKNT 707 (723)
Q Consensus 655 ----~~~~~G~~~L~~~~~~~~~~~~~w~~~~iL~~~~~~~~~l~~i~L~~~~~~~~ 707 (723)
.+..+|.++++. .++ ...++|.|+.++++++++|++++|++|+++.+++.
T Consensus 559 ~~~~~~~~~~~~~l~~-~~~--~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 559 SGNLCCESTGEDVLKQ-LGF--EDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred CcCCcccccHHHHHHh-cCC--cccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 236899999998 888 35789999999999999999999999999988754
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-102 Score=903.43 Aligned_cols=563 Identities=25% Similarity=0.410 Sum_probs=494.5
Q ss_pred cccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCceEEEEcCCCccCCCCC
Q 004932 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLT 198 (723)
Q Consensus 121 ~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lT 198 (723)
.++.+|+|||+++++||++||+|||||||||||++|+|+.+++...+|+|.+||.+... .++.++||+|++.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 35779999999999999999999999999999999999988754457999999987532 2356899999999999999
Q ss_pred HHHHHHHHHHhcCCCccc--hHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 004932 199 VREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (723)
Q Consensus 199 V~E~l~~~~~~~~~~~~~--~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTs 276 (723)
|+|||.|++.++.+.... +++++++++++.+||.+++|+.+|.....++|||||||||+||+||+.+|++|+|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 999999999887765322 355679999999999999999998322467999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHhhhcCCCCCCCCCchHHH
Q 004932 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHF 356 (723)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~p~d~~ 356 (723)
|||+.++..+++.|++++++|+|||+++|||+.+++++||++++|++|+++|+|+++++.+||+++|++||...||+|++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~ 275 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFY 275 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 99999999999999999988999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHHHhcchhHHHHhhhccccCCCCCCccccChHHHHHHHHHHHhcCHHHHHHHHHHHHhhhcc-----C--CCcCCCCCC
Q 004932 357 LRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKE-----G--PFLKSKGKA 429 (723)
Q Consensus 357 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~ 429 (723)
++.++.+.+. +....+..+++.+.|+.++.+++..+........+ . ......+..
T Consensus 276 ~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (617)
T TIGR00955 276 VQVLAVIPGS------------------ENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNA 337 (617)
T ss_pred HHHhhcCccc------------------ccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCC
Confidence 9887654211 01112344566777777765554443332211111 0 011235678
Q ss_pred CHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHh
Q 004932 430 SSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNI-AGVPALMK 508 (723)
Q Consensus 430 s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~l~~~~~~i~~r~g~lff~~~~~~~~~~-~~~~~~~~ 508 (723)
+|++|+++|++|++++.+|||.++..|+++.+++|+++|++||++++++.++++|.|++|+++++++|.++ ..++.|+.
T Consensus 338 ~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~ 417 (617)
T TIGR00955 338 SWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTA 417 (617)
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888875 56789999
Q ss_pred hHHHHHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004932 509 EIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIW 588 (723)
Q Consensus 509 er~v~~rE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y~m~Gl~~~~~~F~~f~l~~~~~~~~~~s~~~~i~~~~ 588 (723)
||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++.+||+|++++++..++++++++++++++
T Consensus 418 er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~ 497 (617)
T TIGR00955 418 ELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAF 497 (617)
T ss_pred HHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCcC-CCCCc-----ccccHHH
Q 004932 589 KDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSF-PVGQV-----RTISGYQ 662 (723)
Q Consensus 589 ~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~w~~yiSp~~Ya~~al~~nef~~~~~-~~~~~-----~~~~G~~ 662 (723)
|+..+|+.+++++++++++|+||++++++||. |+.|++|+||++||+||++.|||.|.++ +|... +..+|++
T Consensus 498 ~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~--~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~ 575 (617)
T TIGR00955 498 SSTSMALTVGPPFVIPFLLFGGFFINSDSIPV--YFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEV 575 (617)
T ss_pred CchHHHHHHHHHHHHHHHHHhhcccChhhccH--HHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHH
Confidence 99999999999999999999999999999995 4457999999999999999999999876 56431 2468999
Q ss_pred HHhhhcCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhccch
Q 004932 663 ALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKN 706 (723)
Q Consensus 663 ~L~~~~~~~~~~~~~w~~~~iL~~~~~~~~~l~~i~L~~~~~~~ 706 (723)
+|+. ||+ ...+.|.|+++|++++++|++++|++||++.+++
T Consensus 576 ~l~~-~g~--~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~ 616 (617)
T TIGR00955 576 ILET-LSF--RNADLYLDLIGLVILIFFFRLLAYFALRIRIRRK 616 (617)
T ss_pred HHHh-cCC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9997 999 3467899999999999999999999999877654
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-100 Score=889.54 Aligned_cols=574 Identities=24% Similarity=0.398 Sum_probs=472.8
Q ss_pred CceEEEEeEEEEEeccc------------------------ccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHc
Q 004932 103 GASVVWKDLTVTIKGKR------------------------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 103 ~~~l~~~~ls~~~~~~~------------------------~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
+..+++.|++++++..+ ..++.+|+|||+++++||++||+||||||||||||+|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 35678888887764221 124679999999999999999999999999999999999
Q ss_pred CCCCCCCceeEEEECCEeCCC-CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccc--hHHHHHHHHHHHcCCchHh
Q 004932 159 RLPHSARMYGEVFVNGAKSEM-PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSLSDYA 235 (723)
Q Consensus 159 ~~~~~~~~~G~I~i~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~--~~~~~v~~~l~~lgL~~~~ 235 (723)
+.+++. .+|+|.+||++... ..+.++||+|++.+++.+||+||+.+++.++.+.... +++++++++++.+||.+++
T Consensus 117 ~~~~~~-~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 195 (659)
T PLN03211 117 RIQGNN-FTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195 (659)
T ss_pred CCCCCc-eeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhc
Confidence 988752 46999999987532 2356999999999999999999999988776553222 2456789999999999999
Q ss_pred hhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcC
Q 004932 236 NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 315 (723)
Q Consensus 236 ~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~ 315 (723)
|+.+| +...++|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.+++++|
T Consensus 196 ~t~vg-~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 196 NTIIG-NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred CceeC-CCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99987 77789999999999999999999999999999999999999999999999999889999999999987789999
Q ss_pred CEEEEEeCCeEEEEeChhHHHHHhhhcCCCCCCCCCchHHHHHHHhcchhHHHHhhhccccCCCCCCccccChHHHHHHH
Q 004932 316 DRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTL 395 (723)
Q Consensus 316 D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~p~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 395 (723)
|++++|++|++++.|+++++.+||+++|++||.+.||+||++++++.+... ..... .+.....+.+
T Consensus 275 D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~-----~~~~~---------~~~~~~~~~l 340 (659)
T PLN03211 275 DSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQT-----DGVSE---------REKPNVKQSL 340 (659)
T ss_pred ceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccC-----CCccc---------cccchHHHHH
Confidence 999999999999999999999999999999999999999999988654210 00000 0000111233
Q ss_pred HHHHhcCHHHHHHHHHHHH--hhh----------ccC-CCcCCCCCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Q 004932 396 EATYQSSADAAAVETMILR--LTE----------KEG-PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMI 462 (723)
Q Consensus 396 ~~~~~~s~~~~~~~~~~~~--~~~----------~~~-~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~ 462 (723)
.+.|++... ++..+.... ... .+. ......+..+||+|+.+|++|++++ +||+.+.++|+++.++
T Consensus 341 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~ 418 (659)
T PLN03211 341 VASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIA 418 (659)
T ss_pred HHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHH
Confidence 444432111 011000000 000 000 0011235578999999999999988 8999999999999999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHhhHHHHHhhccCCCcchHHHHHHHHHHHHhHHHH
Q 004932 463 LTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLN-IAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFL 541 (723)
Q Consensus 463 ~al~~G~~f~~l~~~~~~i~~r~g~lff~~~~~~~~~-~~~~~~~~~er~v~~rE~~~g~Y~~~~y~la~~l~elP~~~i 541 (723)
+|+++|++||+++ +.++++|.|++||++++.++.+ +..++.|+.||++|+||+.+|+|++++|++|++++|+|+.++
T Consensus 419 ~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~ 496 (659)
T PLN03211 419 AALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELI 496 (659)
T ss_pred HHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999985 6789999999999988877655 567899999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcc
Q 004932 542 ISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGP 621 (723)
Q Consensus 542 ~~~if~~i~Y~m~Gl~~~~~~F~~f~l~~~~~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~ 621 (723)
.+++|++|+|||+||++++.+||+|+++++++.++++++|+++++++|++.+|+.+++++++++++|+||+++ +||.
T Consensus 497 ~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~- 573 (659)
T PLN03211 497 LPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPS- 573 (659)
T ss_pred HHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 7985
Q ss_pred cccccccccCHhHHHHHHHHHHHhCCCc-----CCCCCcc--cccHHHHHhhhcCccccCCCchhHHHHHHHHHHHHHHH
Q 004932 622 VWTYPISYVAFHTYSIKGLLENEYLGTS-----FPVGQVR--TISGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLL 694 (723)
Q Consensus 622 ~W~~w~~yiSp~~Ya~~al~~nef~~~~-----~~~~~~~--~~~G~~~L~~~~~~~~~~~~~w~~~~iL~~~~~~~~~l 694 (723)
|+.|++|+||++|||||++.|||.+.. ++|.... ...+..++.. ..++ ..+.|.|+++|++++++|+++
T Consensus 574 -~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~-~~~~--~~~~~~~~~~l~~~~~~~~~l 649 (659)
T PLN03211 574 -CMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEE-DVAG--QISPATSVSVLIFMFVGYRLL 649 (659)
T ss_pred -HHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchh-hhhc--ccchHHHHHHHHHHHHHHHHH
Confidence 445699999999999999999997643 3564321 1111223332 3332 346899999999999999999
Q ss_pred HHHHHHhhc
Q 004932 695 LFVLLYLRV 703 (723)
Q Consensus 695 ~~i~L~~~~ 703 (723)
+|++||+.+
T Consensus 650 ~~~~L~~~~ 658 (659)
T PLN03211 650 AYLALRRIK 658 (659)
T ss_pred HHHHHHhcc
Confidence 999998653
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-99 Score=938.84 Aligned_cols=574 Identities=20% Similarity=0.323 Sum_probs=501.4
Q ss_pred CceEEEEeEEEEEeccc--------ccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 004932 103 GASVVWKDLTVTIKGKR--------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (723)
Q Consensus 103 ~~~l~~~~ls~~~~~~~--------~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G 174 (723)
+..++|+||+++++.+. ..++++|+|||+.++|||++||+||||||||||||+|+|+.+++ ..+|+|.+||
T Consensus 865 ~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g-~~~G~I~inG 943 (1470)
T PLN03140 865 PLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISG 943 (1470)
T ss_pred cceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC-cccceEEECC
Confidence 45799999999986321 13457999999999999999999999999999999999997643 3579999999
Q ss_pred EeCCC--CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccc--hHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCH
Q 004932 175 AKSEM--PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (723)
Q Consensus 175 ~~~~~--~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~--~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSG 250 (723)
++... .++.+|||+|++.+++.+||+|+|.|++.++++.... ++.++++++++.+||.+++|+.+| +..+++|||
T Consensus 944 ~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg-~~~~~~LSg 1022 (1470)
T PLN03140 944 FPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVG-LPGVTGLST 1022 (1470)
T ss_pred ccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccC-CCCCCCcCH
Confidence 86532 2356899999999999999999999998877654322 245679999999999999999987 555689999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC-CeEEEE
Q 004932 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-GNTLFF 329 (723)
Q Consensus 251 GerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~-G~iv~~ 329 (723)
||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++|+
T Consensus 1023 GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~ 1102 (1470)
T PLN03140 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYS 1102 (1470)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999998778999999999996 899999
Q ss_pred eCh----hHHHHHhhhc-CCC-CCCCCCchHHHHHHHhcchhHHHHhhhccccCCCCCCccccChHHHHHHHHHHHhcCH
Q 004932 330 GET----LACLQHFSNA-GFP-CPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSA 403 (723)
Q Consensus 330 G~~----~~~~~~f~~~-g~~-~~~~~~p~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ 403 (723)
|++ +++.+||+++ |.+ ||+..|||||++++++.+.+. . ...++.+.|+.|+
T Consensus 1103 G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~--------------------~---~~~d~~~~~~~s~ 1159 (1470)
T PLN03140 1103 GPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV--------------------K---LGIDFAEHYKSSS 1159 (1470)
T ss_pred CCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc--------------------c---ccchHHHHHhccH
Confidence 996 5789999997 675 999999999999987543110 0 0124778888888
Q ss_pred HHHHHHHHHHHhhhcc----CCCcCCCCCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCCCCh-
Q 004932 404 DAAAVETMILRLTEKE----GPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSL- 478 (723)
Q Consensus 404 ~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~l~~~~- 478 (723)
.+++..+.+++..... .......++.++++|+++|++|+++++||||.++++|+++++++|+++|++||++++++
T Consensus 1160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~ 1239 (1470)
T PLN03140 1160 LYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRS 1239 (1470)
T ss_pred HHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcc
Confidence 8776665554332211 11123568899999999999999999999999999999999999999999999999765
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHh-hHHHHHhhHHHHHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhhhhhhhcccc
Q 004932 479 --SSVVTRVAAIFVFVSFNSLLNIA-GVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVG 555 (723)
Q Consensus 479 --~~i~~r~g~lff~~~~~~~~~~~-~~~~~~~er~v~~rE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y~m~G 555 (723)
.++++|.|++|++++++++.++. .+|.|..||++|+|||++|+|++.+|++|++++|+|+.++.+++|++|+|||+|
T Consensus 1240 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~G 1319 (1470)
T PLN03140 1240 NANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVA 1319 (1470)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 57888999999999998887664 569999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHH
Q 004932 556 LRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTY 635 (723)
Q Consensus 556 l~~~~~~F~~f~l~~~~~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~w~~yiSp~~Y 635 (723)
|++++.+||+|+++++++.++++++|+++++++|+..+|..+++++++++++|+||++++++||. +| .|++|+||++|
T Consensus 1320 l~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~-~~-~W~~~isp~~y 1397 (1470)
T PLN03140 1320 FEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPK-WW-VWYYWICPVAW 1397 (1470)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCch-HH-HHHHHcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999996 35 47999999999
Q ss_pred HHHHHHHHHhCCCcCCCCCcc---cccHHHHHhhhcCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 004932 636 SIKGLLENEYLGTSFPVGQVR---TISGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKK 705 (723)
Q Consensus 636 a~~al~~nef~~~~~~~~~~~---~~~G~~~L~~~~~~~~~~~~~w~~~~iL~~~~~~~~~l~~i~L~~~~~~ 705 (723)
+++|++.|||.|.+++|..++ ..+|++++...||+ ..++.|++++++++|+++|++++++++|+....
T Consensus 1398 ~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q 1468 (1470)
T PLN03140 1398 TVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGY--DPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQ 1468 (1470)
T ss_pred HHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCc--CcccccchhhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999887664443 35788887777999 356899999999999999999999999987643
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-99 Score=944.67 Aligned_cols=564 Identities=22% Similarity=0.347 Sum_probs=492.1
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeCCC----CCceEEEEcCCCccCCC
Q 004932 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-ARMYGEVFVNGAKSEM----PYGSYGFVERETTLIGS 196 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~-~~~~G~I~i~G~~~~~----~~~~~~yv~Q~~~l~~~ 196 (723)
++++|+|||+.+++||+++|+||||||||||||+|+|+.++. ...+|+|.+||++... .++.++|++|++.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 356999999999999999999999999999999999997421 1246999999987531 23469999999999999
Q ss_pred CCHHHHHHHHHHhcCCCc----cch--HHHH-HHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEE
Q 004932 197 LTVREYLYYSALLQLPGF----FCQ--RKNV-VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVL 269 (723)
Q Consensus 197 lTV~E~l~~~~~~~~~~~----~~~--~~~~-v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lL 269 (723)
+||+|+|.|++.++.+.. ..+ ..++ ++++++.+||.+++|+.+| +..+++|||||||||+||++|+.+|+||
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg-~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVG-NDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeC-CCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 999999999988765421 111 2223 4678999999999999998 7889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHhhhcCCCCCC
Q 004932 270 FIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPI 348 (723)
Q Consensus 270 lLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~ 348 (723)
+|||||+|||+.++.++++.|+++++ .|+|||+++|||+.+++++||+|++|++|+++|+|+++++.+||+++|++||+
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~ 311 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPD 311 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999996 49999999999988999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHhcchhHHHHhhhccccCCCCCCccccChHHHHHHHHHHHhcCHHHHHHHHHHHHhhhc----------
Q 004932 349 MQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEK---------- 418 (723)
Q Consensus 349 ~~~p~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~---------- 418 (723)
+.||+||++++.+.+. +. ........ .....+++.+.|+.|+.++++.+.++.....
T Consensus 312 ~~n~aDfl~~~~~~~~-~~--~~~~~e~~----------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1394)
T TIGR00956 312 RQTTADFLTSLTSPAE-RQ--IKPGYEKK----------VPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAY 378 (1394)
T ss_pred CCChHHHHHhccChhh-hh--cccccccc----------CCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHH
Confidence 9999999888765432 11 11111100 0012356888888888766555444321100
Q ss_pred ---------cCCCcCCCCCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 004932 419 ---------EGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIF 489 (723)
Q Consensus 419 ---------~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~l~~~~~~i~~r~g~lf 489 (723)
......+.+..|+++|+++|++|+++++||||.++++|+++.+++|+++|++||+++++++++++|.|++|
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf 458 (1394)
T TIGR00956 379 RESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALF 458 (1394)
T ss_pred HHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Confidence 00111245788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHhhHHHHHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhhhhhhhccccccccHHHHHHHHHH
Q 004932 490 VFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLN 569 (723)
Q Consensus 490 f~~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y~m~Gl~~~~~~F~~f~l~ 569 (723)
|++++++|+++..++.++.||+||+||+++++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++
T Consensus 459 ~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~ 538 (1394)
T TIGR00956 459 FAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLI 538 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCc
Q 004932 570 FFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTS 649 (723)
Q Consensus 570 ~~~~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~w~~yiSp~~Ya~~al~~nef~~~~ 649 (723)
++++.++++++++++++++|+..+|+.+++++++++++|+||++++++||. |+.|++|+||++|||||++.|||++.+
T Consensus 539 ~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~--~~~W~~yisp~~yafeal~~nef~~~~ 616 (1394)
T TIGR00956 539 LFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLG--WSKWIYYVNPLAYAFESLMVNEFHGRR 616 (1394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccH--HHHHHHHcCHHHHHHHHHHHhhhcCCc
Confidence 999999999999999999999999999999999999999999999999995 556799999999999999999999998
Q ss_pred CCCCC-----------------c---------ccccHHHHHhhhcCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 004932 650 FPVGQ-----------------V---------RTISGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRV 703 (723)
Q Consensus 650 ~~~~~-----------------~---------~~~~G~~~L~~~~~~~~~~~~~w~~~~iL~~~~~~~~~l~~i~L~~~~ 703 (723)
++|.. + +.++|+++|+..||+ ...++|+|++||++|+++|++++++++.+.+
T Consensus 617 ~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~--~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~ 694 (1394)
T TIGR00956 617 FECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQY--YNSHKWRNFGIIIGFTVFFFFVYILLTEFNK 694 (1394)
T ss_pred ccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCc--ccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88841 0 146999999966888 3578999999999999999999999998876
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-98 Score=928.54 Aligned_cols=587 Identities=21% Similarity=0.350 Sum_probs=502.9
Q ss_pred CCceEEEEeEEEEEe-c----------------------------ccccccceeeceeeEEeCCcEEEEECCCCCcHHHH
Q 004932 102 AGASVVWKDLTVTIK-G----------------------------KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTL 152 (723)
Q Consensus 102 ~~~~l~~~~ls~~~~-~----------------------------~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTL 152 (723)
+...+.|+||++.-. . +++.++.+|+|||+.++|||+++|+||||||||||
T Consensus 128 ~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTL 207 (1470)
T PLN03140 128 PTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTL 207 (1470)
T ss_pred CCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHH
Confidence 445689999988654 0 11234569999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCceeEEEECCEeCCC--CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCc-------cch--H---
Q 004932 153 LRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF-------FCQ--R--- 218 (723)
Q Consensus 153 L~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~-------~~~--~--- 218 (723)
||+|+|+++++...+|+|.+||++... .++.++||+|+|.+++.+||+|||.|++.++.+.. ..+ +
T Consensus 208 Lk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~ 287 (1470)
T PLN03140 208 LLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAG 287 (1470)
T ss_pred HHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhcc
Confidence 999999998864467999999987532 24579999999999999999999999987653211 000 0
Q ss_pred ---------------------HHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 004932 219 ---------------------KNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYH 277 (723)
Q Consensus 219 ---------------------~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsg 277 (723)
+..++++++.+||++++|+.+| +..+++|||||||||+||++|+.+|++|||||||+|
T Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg-~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsG 366 (1470)
T PLN03140 288 IFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVG-DEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG 366 (1470)
T ss_pred CCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeC-CccccCCCcccceeeeehhhhcCCCcEEEEeCCCcC
Confidence 0135779999999999999998 888999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHhhhcCCCCCCCCCchHHH
Q 004932 278 LDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHF 356 (723)
Q Consensus 278 LD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~p~d~~ 356 (723)
||+.++.++++.|+++++ .|+|+|+++|||..+++++||+|++|++|+++|+|+++++.+||+++|++||++.||+||+
T Consensus 367 LDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl 446 (1470)
T PLN03140 367 LDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFL 446 (1470)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 999999999999999986 5899999999998899999999999999999999999999999999999999999999998
Q ss_pred HHHHhcchhHHHHhhhccccCCCCCCccccChHHHHHHHHHHHhcCHHHHHHHHHHHHhhhc----cCCCcCCCCCCCHH
Q 004932 357 LRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEK----EGPFLKSKGKASSA 432 (723)
Q Consensus 357 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~ 432 (723)
+++++.+..+ ..|... ..+. .....+++.+.|+++..++++.+++.....+ ......+.+..+++
T Consensus 447 ~~v~s~~~~~-----~~~~~~--~~p~----~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~ 515 (1470)
T PLN03140 447 QEVTSKKDQE-----QYWADR--NKPY----RYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKM 515 (1470)
T ss_pred HHhcCchhhh-----hhhhcc--CCcc----ccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHH
Confidence 8876643211 111111 0000 0012356888999988777665554432111 11112246889999
Q ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCCCCh---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 004932 433 TRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSL---SSVVTRVAAIFVFVSFNSLLNIAGVPALMKE 509 (723)
Q Consensus 433 ~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~l~~~~---~~i~~r~g~lff~~~~~~~~~~~~~~~~~~e 509 (723)
.|++.|++|+++.++||+.++..|+++.+++|+++|++||+++.++ .+.+.+.|++||++++++|.+++.++.++.|
T Consensus 516 ~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~ 595 (1470)
T PLN03140 516 ELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQR 595 (1470)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999997543 3466788999999999999999999999999
Q ss_pred HHHHHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004932 510 IKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWK 589 (723)
Q Consensus 510 r~v~~rE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y~m~Gl~~~~~~F~~f~l~~~~~~~~~~s~~~~i~~~~~ 589 (723)
|+||+|||++++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++|
T Consensus 596 r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~ 675 (1470)
T PLN03140 596 LPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCR 675 (1470)
T ss_pred cchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCcCCC---CCcccccHHHHHhh
Q 004932 590 DVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPV---GQVRTISGYQALQS 666 (723)
Q Consensus 590 ~~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~w~~yiSp~~Ya~~al~~nef~~~~~~~---~~~~~~~G~~~L~~ 666 (723)
++.+|+.+++++++++++|+||++++++||+ |+.|++|+||++||++|+++|||.+..+.+ .....++|+++|+.
T Consensus 676 ~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~--w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~ 753 (1470)
T PLN03140 676 TMIIANTGGALVLLLVFLLGGFILPKGEIPN--WWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNI 753 (1470)
T ss_pred cHHHHHHHHHHHHHHHHHHccceechHhCch--HHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHh
Confidence 9999999999999999999999999999996 556799999999999999999998876642 22236899999987
Q ss_pred hcCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 004932 667 AYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRV 703 (723)
Q Consensus 667 ~~~~~~~~~~~w~~~~iL~~~~~~~~~l~~i~L~~~~ 703 (723)
+|+.....++|+|+++|++|+++|+++++++|++..
T Consensus 754 -~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 754 -FDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred -cCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999554567899999999999999999999999876
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-96 Score=915.17 Aligned_cols=571 Identities=25% Similarity=0.385 Sum_probs=494.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCc
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYG 182 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~-~~~ 182 (723)
..++++||+++++.+ +.++.+|+|||+.+++||++||+||||||||||||+|+|+.+++...+|+|.+||++... .++
T Consensus 758 ~~l~~~nl~~~~~~~-~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~ 836 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIK-KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR 836 (1394)
T ss_pred ceEEEEeeEEEecCC-CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhc
Confidence 358999999998532 234679999999999999999999999999999999999987432245999999988632 245
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccc--hHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHH
Q 004932 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (723)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~--~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (723)
.++||+|++.+++.+||+|||.|++.++.+.... +++++++++++.++|.+++|+.+|. ...+|||||||||+||+
T Consensus 837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~--~~~~LSgGqrqRl~Ia~ 914 (1394)
T TIGR00956 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGV--PGEGLNVEQRKRLTIGV 914 (1394)
T ss_pred ceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCC--CCCCCCHHHhhHHHHHH
Confidence 7999999999999999999999998887654322 2456799999999999999998862 23489999999999999
Q ss_pred HHhhCCc-EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCC-eEEEEeCh----hH
Q 004932 261 ELVMRPH-VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG-NTLFFGET----LA 334 (723)
Q Consensus 261 aL~~~P~-lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G-~iv~~G~~----~~ 334 (723)
||+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++| +++|+|++ ++
T Consensus 915 aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~ 994 (1394)
T TIGR00956 915 ELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHT 994 (1394)
T ss_pred HHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccch
Confidence 9999997 999999999999999999999999999889999999999987788899999999987 99999997 56
Q ss_pred HHHHhhhcCC-CCCCCCCchHHHHHHHhcchhHHHHhhhccccCCCCCCccccChHHHHHHHHHHHhcCHHHHHHHHHHH
Q 004932 335 CLQHFSNAGF-PCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMIL 413 (723)
Q Consensus 335 ~~~~f~~~g~-~~~~~~~p~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~ 413 (723)
+.+||++.|+ +||+..|||||++++++.+... ...+++.+.|+.|...++..+.++
T Consensus 995 ~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~-----------------------~~~~~~~~~~~~s~~~~~~~~~~~ 1051 (1394)
T TIGR00956 995 IINYFEKHGAPKCPEDANPAEWMLEVIGAAPGA-----------------------HANQDYHEVWRNSSEYQAVKNELD 1051 (1394)
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHhhccccc-----------------------chhccHHHHHhcCHHHHHHHHHHH
Confidence 8899999996 9999999999999988653211 001235667777776665554443
Q ss_pred Hhhhcc----C---CCcCCCCCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 004932 414 RLTEKE----G---PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVA 486 (723)
Q Consensus 414 ~~~~~~----~---~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~l~~~~~~i~~r~g 486 (723)
+..... . .....++++||++|+++|++|+++++||||.+++.|+++++++|+++|++||++++++.++++|+|
T Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g 1131 (1394)
T TIGR00956 1052 RLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMF 1131 (1394)
T ss_pred HhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 322110 0 011146889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHH-HhhccCCCcchHHHHHHHHHHHHhHHHHHHHhhhhhhhccccccccHHH---
Q 004932 487 AIFVFVSFNSLLNIAGVPALMKEIKTY-ASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSL--- 562 (723)
Q Consensus 487 ~lff~~~~~~~~~~~~~~~~~~er~v~-~rE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y~m~Gl~~~~~~--- 562 (723)
++|+++.+..+.....+|.|+.||.+| +||+++|+|++.+|++|++++|+|+.++.+++|++|+|||+||++++..
T Consensus 1132 ~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~ 1211 (1394)
T TIGR00956 1132 AVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQ 1211 (1394)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCccccccc
Confidence 999998888777677889999998885 9999999999999999999999999999999999999999999988866
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHH
Q 004932 563 ----LMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIK 638 (723)
Q Consensus 563 ----F~~f~l~~~~~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~w~~yiSp~~Ya~~ 638 (723)
|++|+++++++.++++++|+++++++|+..+|+.+++++++++++|+||++++++||. +|+ |++|+||++|+++
T Consensus 1212 ~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~-~~~-w~~~~sp~~y~~~ 1289 (1394)
T TIGR00956 1212 VHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPG-FWI-FMYRCSPFTYLVQ 1289 (1394)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcH-HHh-HHHhcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999996 465 6999999999999
Q ss_pred HHHHHHhCCCcCCCCCc------------------------------------c----cccHHHHHhhhcCccccCCCch
Q 004932 639 GLLENEYLGTSFPVGQV------------------------------------R----TISGYQALQSAYDISSKSNSKW 678 (723)
Q Consensus 639 al~~nef~~~~~~~~~~------------------------------------~----~~~G~~~L~~~~~~~~~~~~~w 678 (723)
|++.|||.+.++.|... + +.+|+++|+. +++ ...++|
T Consensus 1290 ~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~-~~~--~~~~~w 1366 (1394)
T TIGR00956 1290 ALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEP-ISS--KYSGRW 1366 (1394)
T ss_pred HHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHH-cCC--cccccc
Confidence 99999999987655321 1 3599999998 888 457899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccch
Q 004932 679 GNLLVLFLMAIGYRLLLFVLLYLRVKKN 706 (723)
Q Consensus 679 ~~~~iL~~~~~~~~~l~~i~L~~~~~~~ 706 (723)
+|++++++|++++ ++++++|+++.|++
T Consensus 1367 ~~~~i~~~~~~~~-~~~~~~l~~~~r~~ 1393 (1394)
T TIGR00956 1367 RNFGIFIAFIFFN-IIATVFFYWLARVP 1393 (1394)
T ss_pred cchhhhhHHHHHH-HHHHHhhheEEEcC
Confidence 9999999999999 88888888876543
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-97 Score=865.73 Aligned_cols=572 Identities=25% Similarity=0.372 Sum_probs=502.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-C-CC
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-M-PY 181 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~-~-~~ 181 (723)
....|+|++++++.+. +++++|+||++.++||.++||||+||||||||||+|+||...+ .++|+|++||.+.. . ..
T Consensus 786 ~V~~w~dl~~~~~~qG-~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G-~I~Gdi~i~G~p~~q~tF~ 863 (1391)
T KOG0065|consen 786 DVFYWVDLPYEMPIQG-GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG-YIEGDILISGFPKDQETFA 863 (1391)
T ss_pred ceEEEEeCCccccccc-cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc-eEEeEEEECCeeCchhhhc
Confidence 3578999999886443 6788999999999999999999999999999999999997654 68999999999854 2 34
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccch--HHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ--RKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~--~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (723)
|.+|||.|+|.|.+.+||+|.|.|+|.+|+|...+. +.+.|+++++.++|++++|..|| ..- .|||.+||||++||
T Consensus 864 R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG-~~G-~GLs~eQRKrLTIg 941 (1391)
T KOG0065|consen 864 RVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVG-LPG-SGLSTEQRKRLTIG 941 (1391)
T ss_pred cccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhcc-CCC-CCCCHHHhceeeEE
Confidence 779999999999999999999999999999876543 55789999999999999999998 544 89999999999999
Q ss_pred HHHhhCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe-CCeEEEEeChhH---
Q 004932 260 RELVMRP-HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS-NGNTLFFGETLA--- 334 (723)
Q Consensus 260 ~aL~~~P-~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~-~G~iv~~G~~~~--- 334 (723)
.+|+.+| .||||||||||||+.++..|++.+|++++.|+||+||||||+.++++.||++++|+ +|++||+|+..+
T Consensus 942 VELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~ 1021 (1391)
T KOG0065|consen 942 VELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSS 1021 (1391)
T ss_pred EEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccH
Confidence 9999999 89999999999999999999999999999999999999999999999999999997 789999999854
Q ss_pred -HHHHhhhc-CCCCCCCCCchHHHHHHHhcchhHHHHhhhccccCCCCCCccccChHHHHHHHHHHHhcCHHHHHHHHHH
Q 004932 335 -CLQHFSNA-GFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMI 412 (723)
Q Consensus 335 -~~~~f~~~-g~~~~~~~~p~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~ 412 (723)
+++||+++ |.+||...|||||++++++...+. . .-.++.+.|++|++++++.+++
T Consensus 1022 ~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~------~-----------------~~~D~a~~w~~S~e~k~~~e~v 1078 (1391)
T KOG0065|consen 1022 KLIEYFESIGGVKCISDENPAEWMLEVIGAGAEA------S-----------------LSVDFAEIWKNSEEYKRNKELV 1078 (1391)
T ss_pred HHHHHHHhcCCccCCCCCChHHHHHhhccccccc------c-----------------cCccHHHHHhccHHHHHHHHHH
Confidence 56799999 599999999999999998754221 0 0115788999999999988888
Q ss_pred HHhhhccC-----CCcCCCCCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 004932 413 LRLTEKEG-----PFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAA 487 (723)
Q Consensus 413 ~~~~~~~~-----~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~l~~~~~~i~~r~g~ 487 (723)
+++.+... ...++++++|+|.|++.++||+++.+||+|.|+++|++++++.||++|+.||++|++.+++||.+|+
T Consensus 1079 ~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a 1158 (1391)
T KOG0065|consen 1079 KELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGA 1158 (1391)
T ss_pred HHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHH
Confidence 76544321 1233679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhH-HHHHhhHHHHHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhhhhhhhccccccccHHHHHHH
Q 004932 488 IFVFVSFNSLLNIAGV-PALMKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYF 566 (723)
Q Consensus 488 lff~~~~~~~~~~~~~-~~~~~er~v~~rE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y~m~Gl~~~~~~F~~f 566 (723)
+|+.+.+.+....+.+ +.+..||.+++||+++|+||+.+|++|++++|+|+.++++.+|.+|+|||+|+.+++.+|++|
T Consensus 1159 ~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f 1238 (1391)
T KOG0065|consen 1159 AYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWF 1238 (1391)
T ss_pred HHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHH
Confidence 9999988877666644 666779999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhC
Q 004932 567 VLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYL 646 (723)
Q Consensus 567 ~l~~~~~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~w~~yiSp~~Ya~~al~~nef~ 646 (723)
++.++++.++.+++|+++.+++||..+|.++.+.++.++.+|+|+++|++.||. +|+ ||||+||+.|.+++++..+++
T Consensus 1239 ~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~-fW~-wmy~lsP~ty~l~gli~~~~~ 1316 (1391)
T KOG0065|consen 1239 LLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPK-FWI-WMYYLSPVTYTLEGLISSQLG 1316 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccc-eee-eeeecCcHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999997 465 699999999999999999999
Q ss_pred CCcCCCCCcc--------cccHHHHHhhhcC----ccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhccch
Q 004932 647 GTSFPVGQVR--------TISGYQALQSAYD----ISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKN 706 (723)
Q Consensus 647 ~~~~~~~~~~--------~~~G~~~L~~~~~----~~~~~~~~w~~~~iL~~~~~~~~~l~~i~L~~~~~~~ 706 (723)
+.+-.|...+ ..+-.++++..+| +- .+..-...++.+++.+++.+++.+.+|+..+-|
T Consensus 1317 d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~--~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~wr 1386 (1391)
T KOG0065|consen 1317 DVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYL--HNPLATTACVYCAYTVADAFLAAFNIKYLNFWR 1386 (1391)
T ss_pred CCceeeecCCccccCCCCCcCHHHHHHHHhccCccee--ccCcceeEEEEeeeehHHHHHHHHHHHHHHHHH
Confidence 9887774332 1234566666677 41 122222345677788899999999988876543
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-90 Score=806.09 Aligned_cols=566 Identities=26% Similarity=0.431 Sum_probs=503.4
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCceEEEEcCCCccCCCCCH
Q 004932 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLTV 199 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lTV 199 (723)
...+|+|+|+.++|||++.++||.||||||||++|+|-++......|+|.+||.+.+. .++.++|+.|+|.|+|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 4579999999999999999999999999999999999887654557899999987432 34679999999999999999
Q ss_pred HHHHHHHHHhcCCCccc---hHHH----HHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 004932 200 REYLYYSALLQLPGFFC---QRKN----VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFID 272 (723)
Q Consensus 200 ~E~l~~~~~~~~~~~~~---~~~~----~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLD 272 (723)
+|+|.|+++++.+...- .+++ ..+.+++.+||++++|+++| |+..||+||||||||++|.+++.+|+++++|
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VG-nd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVG-NDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceec-ccccccccCcccceeeeeeeeecCcceeeee
Confidence 99999999998874321 1222 56789999999999999998 9999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHhhhcCCCCCCCCC
Q 004932 273 EPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQS 351 (723)
Q Consensus 273 EPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~ 351 (723)
|+|+|||+.++.++++.|+++++ .+.|++++++||+++++++||+|++|.+|++||+||.+++++||+++|+.||++.+
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~ 365 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKG 365 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccC
Confidence 99999999999999999999985 68999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhcchhHHHHhhhccccCCCCCCccccChHHHHHHHHHHHhcCHHHHHHHHHHHHhhhcc----CCCcCCCC
Q 004932 352 PSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKE----GPFLKSKG 427 (723)
Q Consensus 352 p~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~----~~~~~~~~ 427 (723)
++||+.++.+. .+. .+.|..+... -......++.+.|.+++.++++...++...++. .....+++
T Consensus 366 ~ADfLt~vts~-k~~----~~~~~~~~~~------~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y 434 (1391)
T KOG0065|consen 366 TADFLTEVTSK-KDQ----EQYWNKRSKP------YPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKY 434 (1391)
T ss_pred HHHHHHHhhcC-ccc----cccccccCCC------cccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCce
Confidence 99977776652 111 1122211111 111234579999999999988877766433221 12234678
Q ss_pred CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCC-CChHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 004932 428 KASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLG-HSLSSVVTRVAAIFVFVSFNSLLNIAGVPAL 506 (723)
Q Consensus 428 ~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~l~-~~~~~i~~r~g~lff~~~~~~~~~~~~~~~~ 506 (723)
..++|.|+++|+.|.++.+.||..++..++++.+++|+++|++|++.+ .+..+.+.|.|++||++++.+|.+++.++..
T Consensus 435 ~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~ 514 (1391)
T KOG0065|consen 435 SVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALT 514 (1391)
T ss_pred eccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 8888999999999999999999999999999
Q ss_pred HhhHHHHHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004932 507 MKEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVAS 586 (723)
Q Consensus 507 ~~er~v~~rE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y~m~Gl~~~~~~F~~f~l~~~~~~~~~~s~~~~i~~ 586 (723)
++.||||+|||...+|++++|.++.+++++|+.++.+++|.+|+||++||.+++++||+++++++++..|+.++++++++
T Consensus 515 ~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~ 594 (1391)
T KOG0065|consen 515 FQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIAS 594 (1391)
T ss_pred HhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCcCCCCCc-----------
Q 004932 587 IWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQV----------- 655 (723)
Q Consensus 587 ~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~w~~yiSp~~Ya~~al~~nef~~~~~~~~~~----------- 655 (723)
++++...|+.++++.++++.+++||+|+..+||+ |+.|++|+||+.||+|++|.|||++++++|.+.
T Consensus 595 l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~--W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~ 672 (1391)
T KOG0065|consen 595 LSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPP--WFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIEN 672 (1391)
T ss_pred hcchHHHHhhHhHHHHHHHHHHcceeeeccccch--HHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCccccccccc
Confidence 9999999999999999999999999999999995 667899999999999999999999999988611
Q ss_pred ----------c--cccHHHHHhhhcCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 004932 656 ----------R--TISGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRV 703 (723)
Q Consensus 656 ----------~--~~~G~~~L~~~~~~~~~~~~~w~~~~iL~~~~~~~~~l~~i~L~~~~ 703 (723)
| ++.|+++++..|++ ..++.|+|++|++||.++|.++..+++-|.+
T Consensus 673 ~~c~~~~~~~G~~~v~g~~~l~~~~~y--~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~ 730 (1391)
T KOG0065|consen 673 KVCAATGATLGNDYVSGRDYLKVQYQY--EYKWYWRNFGILLGFTVFFNFVFLIALEYLK 730 (1391)
T ss_pred ccchhhccccCceEEeccccccccccc--ccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence 1 45777777776776 5689999999999999999999999988776
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-53 Score=412.19 Aligned_cols=218 Identities=26% Similarity=0.348 Sum_probs=194.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++||++.| +...+|+|||+++++||+++|+||||||||||||||+|+.++++ |+|.++|++...
T Consensus 2 mi~i~~l~K~f-----g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~---G~I~i~g~~~~~~~~~~ 73 (240)
T COG1126 2 MIEIKNLSKSF-----GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDS---GSITVDGEDVGDKKDIL 73 (240)
T ss_pred eEEEEeeeEEe-----CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCC---ceEEECCEeccchhhHH
Confidence 47899999999 45789999999999999999999999999999999999999985 999999975421
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
.++.+|+|+|+..|||++||.||+.++...-......+.+++..++|+.+||.+.+|. ||.+|||||||||+|
T Consensus 74 ~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~------yP~qLSGGQqQRVAI 147 (240)
T COG1126 74 KLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADA------YPAQLSGGQQQRVAI 147 (240)
T ss_pred HHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhh------CccccCcHHHHHHHH
Confidence 2457999999999999999999999876432222223356778899999999999877 566999999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
||||+.+|+++++|||||+|||....++++.+++|+++|.|.|++||.. ..+.+.+|||++|++|++++.|++++++.
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM-~FAr~VadrviFmd~G~iie~g~p~~~f~ 225 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEM-GFAREVADRVIFMDQGKIIEEGPPEEFFD 225 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechh-HHHHHhhheEEEeeCCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999999999999999999986 58899999999999999999999988754
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=407.55 Aligned_cols=221 Identities=25% Similarity=0.306 Sum_probs=197.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (723)
++++||++.|..+......+|+|||++|++||+++|+|.||||||||+|+|+++..|++ |+|.++|+++..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pts---G~v~v~G~di~~l~~~~L 78 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS---GSVFVDGQDLTALSEAEL 78 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCC---ceEEEcCEecccCChHHH
Confidence 68999999997543234579999999999999999999999999999999999999985 999999976432
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004932 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
.++.+|+++|+..|+...||.||+.|+..+.. ....+.+++|.++++.+||++.+++ ||.+|||||||||+
T Consensus 79 r~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag-~~k~ei~~RV~elLelVgL~dk~~~------yP~qLSGGQKQRVa 151 (339)
T COG1135 79 RQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG-VPKAEIKQRVAELLELVGLSDKADR------YPAQLSGGQKQRVA 151 (339)
T ss_pred HHHHhhccEEeccccccccchHHhhhhhhHhhcC-CCHHHHHHHHHHHHHHcCChhhhcc------CchhcCcchhhHHH
Confidence 24579999999999999999999999987653 1123477899999999999988876 56699999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
|||||+.+|+||++|||||+|||.+...|+++|+++.+ .|.||++++|+. +.+.++||||.+|++|++++.|++.+++
T Consensus 152 IARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 152 IARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999999985 699999999997 5899999999999999999999998876
Q ss_pred H
Q 004932 337 Q 337 (723)
Q Consensus 337 ~ 337 (723)
.
T Consensus 231 ~ 231 (339)
T COG1135 231 A 231 (339)
T ss_pred c
Confidence 4
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=390.23 Aligned_cols=226 Identities=25% Similarity=0.422 Sum_probs=200.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (723)
++++||++.|. ++.+++|+|+++++||+++++|||||||||+||+|+++++|++ |+|++||+++.. .
T Consensus 2 I~~~nvsk~y~-----~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~---G~I~i~g~~i~~~d~~~L 73 (309)
T COG1125 2 IEFENVSKRYG-----NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTS---GEILIDGEDISDLDPVEL 73 (309)
T ss_pred ceeeeeehhcC-----CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCC---ceEEECCeecccCCHHHH
Confidence 68999999994 5689999999999999999999999999999999999999985 999999998643 2
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch--HhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD--YANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
++++|||-|+..|||++||.||+.+...+.... ..+.+++++++++.+||+. ++++ +|++|||||+|||.+
T Consensus 74 Rr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~-k~~i~~r~~ELl~lvgL~p~~~~~R------yP~eLSGGQQQRVGv 146 (309)
T COG1125 74 RRKIGYVIQQIGLFPHLTVAENIATVPKLLGWD-KERIKKRADELLDLVGLDPSEYADR------YPHELSGGQQQRVGV 146 (309)
T ss_pred HHhhhhhhhhcccCCCccHHHHHHhhhhhcCCC-HHHHHHHHHHHHHHhCCCHHHHhhc------CchhcCcchhhHHHH
Confidence 467999999999999999999998876654322 2346788999999999974 6666 678999999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
||||+.+|+||+||||+++|||.++.++-+.++++.+ -|+|||+++|+. +|+++++|||++|++|+++.+++|++++.
T Consensus 147 ~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDi-dEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI-DEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred HHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCH-HHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999985 599999988876 68999999999999999999999998864
Q ss_pred HhhhcCCCCCCCCCchHHHHHHH
Q 004932 338 HFSNAGFPCPIMQSPSDHFLRAI 360 (723)
Q Consensus 338 ~f~~~g~~~~~~~~p~d~~l~~~ 360 (723)
||++.|+..+
T Consensus 226 -------------~Pan~FV~~f 235 (309)
T COG1125 226 -------------NPANDFVEDF 235 (309)
T ss_pred -------------CccHHHHHHH
Confidence 5776676654
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-48 Score=397.46 Aligned_cols=218 Identities=27% Similarity=0.400 Sum_probs=192.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++||++.|. ++.+|+|+|+.+++||+++|+||||||||||||+|+|+++|.. |+|.++|+++..
T Consensus 2 ~L~~~~ls~~y~-----~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~---G~V~l~g~~i~~~~~ke 73 (258)
T COG1120 2 MLEVENLSFGYG-----GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKS---GEVLLDGKDIASLSPKE 73 (258)
T ss_pred eeEEEEEEEEEC-----CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCC---CEEEECCCchhhcCHHH
Confidence 478999999994 5689999999999999999999999999999999999999875 999999987542
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC--Cccch-HHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLP--GFFCQ-RKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~--~~~~~-~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (723)
..+.++||||.....+.+||+|.+.++..-... ...++ .++.++++|+.+|+.+++++.+. +|||||||||
T Consensus 74 lAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~------~LSGGerQrv 147 (258)
T COG1120 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD------ELSGGERQRV 147 (258)
T ss_pred HhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc------ccChhHHHHH
Confidence 235799999999888899999999876321111 11122 44579999999999999999765 9999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 257 ~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
.|||||+++|++|+||||||+||..++.++++++++++ ++|+|||+++|++. .+.++||++++|++|++++.|+|+++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~ev 226 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEEV 226 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcchh
Confidence 99999999999999999999999999999999999999 56999999999984 78999999999999999999999988
Q ss_pred HH
Q 004932 336 LQ 337 (723)
Q Consensus 336 ~~ 337 (723)
++
T Consensus 227 lT 228 (258)
T COG1120 227 LT 228 (258)
T ss_pred cC
Confidence 63
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-48 Score=388.86 Aligned_cols=207 Identities=30% Similarity=0.409 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (723)
.+.++++++.|. ...+|+|||+++.+||+++|+||||||||||||+|+|+.+|++ |+|.++|+++..+...+
T Consensus 3 ~l~i~~v~~~f~-----~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~---G~V~~~g~~v~~p~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFG-----GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTS---GEVLLDGRPVTGPGPDI 74 (248)
T ss_pred eEEEEeeEEEeC-----ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCcccCCCCCCE
Confidence 578999999994 3689999999999999999999999999999999999999985 99999999876566789
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 004932 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (723)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~ 264 (723)
+||+|++.|+|.+||.||+.++...+. ....+++++++++|+.+||.+..++ +|++|||||||||+|||||+.
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~-~~~~e~~~~a~~~L~~VgL~~~~~~------~P~qLSGGMrQRVaiARAL~~ 147 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRG-KSKAEARERAKELLELVGLAGFEDK------YPHQLSGGMRQRVAIARALAT 147 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccc-cchHhHHHHHHHHHHHcCCcchhhc------CccccChHHHHHHHHHHHHhc
Confidence 999999999999999999999876643 1122356689999999999999987 667999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeC--CeEE
Q 004932 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSN--GNTL 327 (723)
Q Consensus 265 ~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~--G~iv 327 (723)
+|+||+||||+++||+.++..+.+.|.++. ++++||+++||+. +|+..++|||++|.+ |+|.
T Consensus 148 ~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi-~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 148 RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDV-DEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHhhhCEEEEecCCCccee
Confidence 999999999999999999999999999987 5689999988887 588899999999998 4453
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-48 Score=383.31 Aligned_cols=219 Identities=25% Similarity=0.357 Sum_probs=193.5
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (723)
..+++++|++++ +.+.|++|||++|++||+++||||||||||||||+|.|+++|+. |+|.++|+++..
T Consensus 7 ~~I~vr~v~~~f-----G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~---GeI~i~G~~i~~ls~~ 78 (263)
T COG1127 7 PLIEVRGVTKSF-----GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDK---GEILIDGEDIPQLSEE 78 (263)
T ss_pred ceEEEeeeeeec-----CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCC---CeEEEcCcchhccCHH
Confidence 468999999998 46789999999999999999999999999999999999999985 999999987532
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchH-hhhhhcCCCCCCCCCHHHHH
Q 004932 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERR 254 (723)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~~LSGGerq 254 (723)
.++++|+++|+..||..+||.||+.|..+-.........++.+..-|+.+||... ++. +|.+|||||+|
T Consensus 79 ~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~------~PsELSGGM~K 152 (263)
T COG1127 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADL------YPSELSGGMRK 152 (263)
T ss_pred HHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhh------CchhhcchHHH
Confidence 1356999999999999999999999976543222222356678888999999877 665 56799999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
|++|||||+.+|+|||+||||+||||.++..+.+++++|++ -|.|+++++|+. .+++.+|||+++|.+|+|+..|+++
T Consensus 153 RvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~Gt~~ 231 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL-DSLLTIADRVAVLADGKVIAEGTPE 231 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh-HHHHhhhceEEEEeCCEEEEeCCHH
Confidence 99999999999999999999999999999999999999986 489999988887 5899999999999999999999999
Q ss_pred HHHH
Q 004932 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++.+
T Consensus 232 el~~ 235 (263)
T COG1127 232 ELLA 235 (263)
T ss_pred HHHh
Confidence 9864
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-47 Score=404.79 Aligned_cols=222 Identities=29% Similarity=0.414 Sum_probs=197.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----P 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----~ 180 (723)
.+.++||++.|+. .+.+|+||||++++||++||+||||||||||+|+|+|+.+|++ |+|.++|.+... .
T Consensus 4 ~i~~~~l~k~~~~----~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~---G~i~i~G~~~~~~~~~~ 76 (293)
T COG1131 4 VIEVRNLTKKYGG----DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTS---GEILVLGYDVVKEPAKV 76 (293)
T ss_pred eeeecceEEEeCC----CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEEcCEeCccCHHHH
Confidence 4788999999941 4689999999999999999999999999999999999999975 999999987533 2
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHH
Q 004932 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (723)
++++||++|++.+++.+||+|+|.|.+.++.... ...+++++++++.+||.+..++.+ ++||+||||||+||+
T Consensus 77 ~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~------~~lS~G~kqrl~ia~ 149 (293)
T COG1131 77 RRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK-EEAEERIEELLELFGLEDKANKKV------RTLSGGMKQRLSIAL 149 (293)
T ss_pred HhheEEEccCCCCCccccHHHHHHHHHHHhCCCh-hHHHHHHHHHHHHcCCchhhCcch------hhcCHHHHHHHHHHH
Confidence 3579999999999999999999999988875432 235678999999999998666655 499999999999999
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHh
Q 004932 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTG-CTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (723)
Q Consensus 261 aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (723)
||+.+|++|||||||+||||.++.++.+.|++++++| +||++|+|++ +++..+||+|++|++|++++.|+++++...+
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~ 228 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELKEKF 228 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHHhh
Confidence 9999999999999999999999999999999999887 7999988887 5889999999999999999999999877665
Q ss_pred hh
Q 004932 340 SN 341 (723)
Q Consensus 340 ~~ 341 (723)
..
T Consensus 229 ~~ 230 (293)
T COG1131 229 GG 230 (293)
T ss_pred cc
Confidence 43
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-47 Score=382.58 Aligned_cols=209 Identities=29% Similarity=0.380 Sum_probs=181.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (723)
++++||++.|..+.. ...+|++||+.+++||++||+|||||||||||++|.|+..|++ |+|.++|++...
T Consensus 2 i~~~~v~k~y~~~~~-~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~---G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 2 IELKNVSKIYGLGGE-KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTS---GEVLINGKDLTKLSEKEL 77 (226)
T ss_pred cEEeeeEEEeccCCc-ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---ceEEECCEEcCcCCHHHH
Confidence 468999998864432 2679999999999999999999999999999999999999975 999999986531
Q ss_pred ---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH
Q 004932 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (723)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (723)
.++.+|||+|+..|+|.+||.||+..++.+...... ..+++++++++.+||.+..++ .+|.+|||||||||
T Consensus 78 ~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~-~~~~~~~~l~~~lgl~~~~~~-----~~p~eLSGGqqQRV 151 (226)
T COG1136 78 AKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG-RRKRAAEELLEVLGLEDRLLK-----KKPSELSGGQQQRV 151 (226)
T ss_pred HHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChh-HHHHHHHHHHHhcCChhhhcc-----CCchhcCHHHHHHH
Confidence 234699999999999999999999987765432211 356778999999999977762 24569999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004932 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 257 ~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
+|||||+.+|++|++||||.+||+.++..|+++|++++++ |+|+|++||+| .+...|||++.|.+|++
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 9999999999999999999999999999999999999865 89999999987 57889999999999994
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=408.19 Aligned_cols=219 Identities=26% Similarity=0.393 Sum_probs=197.7
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---P 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~ 180 (723)
..++++||++.|. +..+|+|||+++++||+++|+||||||||||||+|+|+..|++ |+|.++|+++.. .
T Consensus 4 ~~l~i~~v~k~yg-----~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~---G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 4 PALEIRNVSKSFG-----DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS---GEILLDGEDITDVPPE 75 (352)
T ss_pred ceEEEEeeeeecC-----CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCCCChh
Confidence 4689999999993 5689999999999999999999999999999999999999986 999999998642 3
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHH
Q 004932 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (723)
++.+|+|+|+..|||+|||+||+.|++.++......+.+++|+++++.++|++++++. |++|||||||||+|||
T Consensus 76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~------p~qLSGGQqQRVALAR 149 (352)
T COG3842 76 KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRK------PHQLSGGQQQRVALAR 149 (352)
T ss_pred hcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhC------hhhhChHHHHHHHHHH
Confidence 5789999999999999999999999987443222223667999999999999999885 4599999999999999
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 261 aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
||+.+|++|+||||.|+||..-+.++...|+++.+ .|.|.|++||+. +++..++|||++|++|+|...|+|+++..
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~eiY~ 226 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEIYE 226 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHHhh
Confidence 99999999999999999999999999999999984 699999988887 58999999999999999999999999854
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=384.85 Aligned_cols=218 Identities=27% Similarity=0.403 Sum_probs=187.5
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--C
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--Y 181 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--~ 181 (723)
..++++|+++.|.+ . ++|+|||+.+++|++++|+||||||||||+|+|+|+++|.. |+|.++|++.... .
T Consensus 3 ~~i~v~nl~v~y~~----~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~---G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 3 PMIEVENLTVSYGN----R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS---GEIKIFGKPVRKRRKR 74 (254)
T ss_pred cEEEEeeeEEEECC----E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCc---ceEEEccccccccccC
Confidence 36899999999942 2 69999999999999999999999999999999999999975 9999999875433 3
Q ss_pred ceEEEEcCCCcc--CCCCCHHHHHHHHHHhcCC---CccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH
Q 004932 182 GSYGFVERETTL--IGSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (723)
Q Consensus 182 ~~~~yv~Q~~~l--~~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (723)
..+|||||...+ -..+||+|.+..+...+.. ....+.++.++++|+.+|+.+++++.++ +|||||+|||
T Consensus 75 ~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~------~LSGGQ~QRV 148 (254)
T COG1121 75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG------ELSGGQKQRV 148 (254)
T ss_pred CeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc------ccCcHHHHHH
Confidence 579999996422 2347999999776322211 1112346789999999999999999888 9999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 257 ~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
.|||||+.+|++|+|||||+|+|+.++..++++|++|+++|+||++++|+. ..+.++||+|+.| ++++++.|+++++.
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL-~~v~~~~D~vi~L-n~~~~~~G~~~~~~ 226 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDL-GLVMAYFDRVICL-NRHLIASGPPEEVL 226 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc-HHhHhhCCEEEEE-cCeeEeccChhhcc
Confidence 999999999999999999999999999999999999998899999987776 5899999999999 67889999998876
Q ss_pred H
Q 004932 337 Q 337 (723)
Q Consensus 337 ~ 337 (723)
+
T Consensus 227 ~ 227 (254)
T COG1121 227 T 227 (254)
T ss_pred C
Confidence 4
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-47 Score=389.99 Aligned_cols=219 Identities=27% Similarity=0.390 Sum_probs=195.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCCC--
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA---KSEM-- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~---~~~~-- 179 (723)
.+.++|+++.+ +...+++|||+.|+.||++||+|||||||||||++|+|++.|+. |.|.+||+ +.+.
T Consensus 2 ~i~i~~~~~~~-----~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~---G~I~~~~~~l~D~~~~~ 73 (345)
T COG1118 2 SIRINNVKKRF-----GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDA---GRIRLNGRVLFDVSNLA 73 (345)
T ss_pred ceeehhhhhhc-----ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCC---ceEEECCEeccchhccc
Confidence 46788888877 35678999999999999999999999999999999999999986 99999998 4322
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-CccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004932 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
..+++|||+|+..+|++|||.+|+.|+...+.. ....+.+.+++++|+.+.|++..++ +|.+|||||||||+
T Consensus 74 ~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~r------yP~QLSGGQrQRVA 147 (345)
T COG1118 74 VRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADR------YPAQLSGGQRQRVA 147 (345)
T ss_pred hhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhc------CchhcChHHHHHHH
Confidence 236799999999999999999999999876621 1122467889999999999999987 56799999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
+||||+.+|++|+||||+++||...+.++.+.|+++.++ |.|+++++|++ +++.++||||++|++|+|...|+++++.
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 999999999999999999999999999999999999865 99999988887 6899999999999999999999999987
Q ss_pred HH
Q 004932 337 QH 338 (723)
Q Consensus 337 ~~ 338 (723)
+.
T Consensus 227 ~~ 228 (345)
T COG1118 227 DH 228 (345)
T ss_pred cC
Confidence 54
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=399.84 Aligned_cols=218 Identities=28% Similarity=0.414 Sum_probs=196.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (723)
.++++||++.|.+ ..+|+|||++++.||+++|+||||||||||||+|||+.+|++ |+|.++|++... ..
T Consensus 3 ~i~l~~v~K~yg~-----~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~---G~I~i~g~~vt~l~P~~ 74 (338)
T COG3839 3 ELELKNVRKSFGS-----FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS---GEILIDGRDVTDLPPEK 74 (338)
T ss_pred EEEEeeeEEEcCC-----ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCCCChhH
Confidence 5899999999842 229999999999999999999999999999999999999985 999999998643 34
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.+++|+|+..|+|+|||+||+.|+.+.+.- ...+.+++|+++.+.++|++++++++ ++|||||||||+||||
T Consensus 75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~-~k~ei~~rV~eva~~L~l~~lL~r~P------~~LSGGQrQRVAlaRA 147 (338)
T COG3839 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGV-PKAEIDKRVKEVAKLLGLEHLLNRKP------LQLSGGQRQRVALARA 147 (338)
T ss_pred CCEEEEeCCccccCCCcHHHHhhhhhhhCCC-chHHHHHHHHHHHHHcCChhHHhcCc------ccCChhhHHHHHHHHH
Confidence 7899999999999999999999999876532 12246789999999999999999854 5999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHH
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (723)
|+++|++++||||+|+||+..+..+...|+++.+ -|.|+|.+||+. .++..++|||++|++|++...|+|.++.+.
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 9999999999999999999999999999999985 588999988887 589999999999999999999999998753
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=374.25 Aligned_cols=220 Identities=29% Similarity=0.380 Sum_probs=192.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (723)
..++++||++.|+ .++++|+|||+.+++||++||+||||||||||||+|+|+.+++. |+|.+||.++..
T Consensus 2 ~~i~~~nl~k~yp----~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~---G~i~~~g~~i~~~~~k 74 (258)
T COG3638 2 MMIEVKNLSKTYP----GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTS---GEILFNGVQITKLKGK 74 (258)
T ss_pred ceEEEeeeeeecC----CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCc---ceEEecccchhccchH
Confidence 3689999999996 35689999999999999999999999999999999999999875 999999975421
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-------CccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCC
Q 004932 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLP-------GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248 (723)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~L 248 (723)
.++++||++|+..|.+.+||.||+..+..-+.+ ....+.+..+-++|+.+|+.+.+.++.+ .|
T Consensus 75 ~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~------~L 148 (258)
T COG3638 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS------TL 148 (258)
T ss_pred HHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc------cC
Confidence 135799999999999999999999776422211 1112345667889999999999988776 99
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 004932 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (723)
Q Consensus 249 SGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (723)
||||+|||+|||||+++|+||+.|||+++|||.+++++|+.|++++ ++|.|||++.|+. +.+.++||||+-|++|+++
T Consensus 149 SGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~Riigl~~G~iv 227 (258)
T COG3638 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKKYADRIIGLKAGRIV 227 (258)
T ss_pred CcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhhheEecCCcEE
Confidence 9999999999999999999999999999999999999999999998 5799999999997 5789999999999999999
Q ss_pred EEeChhHHHH
Q 004932 328 FFGETLACLQ 337 (723)
Q Consensus 328 ~~G~~~~~~~ 337 (723)
|+|+++++-+
T Consensus 228 fDg~~~el~~ 237 (258)
T COG3638 228 FDGPASELTD 237 (258)
T ss_pred EeCChhhhhH
Confidence 9999988643
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-46 Score=373.27 Aligned_cols=221 Identities=25% Similarity=0.353 Sum_probs=190.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (723)
..++++|+++.|+.++ ...++|+|||+++.+||+++|+|+||||||||+++|+|+.+|+. |+|.++|++...
T Consensus 2 ~~l~v~nl~~~y~~~~-~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~---G~I~~~G~~~~~~~~~ 77 (252)
T COG1124 2 TLLSVRNLSIVYGGGK-FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS---GSILLDGKPLAPKKRA 77 (252)
T ss_pred ceEEEeceEEEecCCc-chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCC---ceEEECCcccCccccc
Confidence 3589999999996432 22369999999999999999999999999999999999999975 999999976432
Q ss_pred --CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCCHHHHH
Q 004932 180 --PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERR 254 (723)
Q Consensus 180 --~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerq 254 (723)
.++.+-+|+||+ .+.|..||++.|..+.... ...+.++++.++++.+||. +++++ +|++|||||||
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~---~~~~~~~~i~~~L~~VgL~~~~l~R------~P~eLSGGQ~Q 148 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH---GLSKSQQRIAELLDQVGLPPSFLDR------RPHELSGGQRQ 148 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccC---CccHHHHHHHHHHHHcCCCHHHHhc------CchhcChhHHH
Confidence 246789999996 7899999999998776431 1223455699999999996 56666 56799999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
|++|||||+.+|++||||||||+||+..+.+|+++|.++++ .|.|.|+++|+. ..+.++||||+||++|++|+.++++
T Consensus 149 RiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl-~~v~~~cdRi~Vm~~G~ivE~~~~~ 227 (252)
T COG1124 149 RIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL-ALVEHMCDRIAVMDNGQIVEIGPTE 227 (252)
T ss_pred HHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH-HHHHHHhhheeeeeCCeEEEeechh
Confidence 99999999999999999999999999999999999999985 578999977765 6899999999999999999999999
Q ss_pred HHHHH
Q 004932 334 ACLQH 338 (723)
Q Consensus 334 ~~~~~ 338 (723)
++.+.
T Consensus 228 ~l~~~ 232 (252)
T COG1124 228 ELLSH 232 (252)
T ss_pred hhhcC
Confidence 88653
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-46 Score=365.57 Aligned_cols=222 Identities=25% Similarity=0.363 Sum_probs=193.5
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCCC-
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEMP- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~--~~~~~~G~I~i~G~~~~~~- 180 (723)
..++++||++.|. .+++|+|||+.+.+++++|+|||||||||||||++..+.. +..+++|+|.++|+++...
T Consensus 6 ~~~~~~~l~~yYg-----~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~ 80 (253)
T COG1117 6 PAIEVRDLNLYYG-----DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK 80 (253)
T ss_pred ceeEecceeEEEC-----chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC
Confidence 3588999999994 6789999999999999999999999999999999999754 3456889999999975322
Q ss_pred ------CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HhhhhhcCCCCCCCCCHHHH
Q 004932 181 ------YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGER 253 (723)
Q Consensus 181 ------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGer 253 (723)
++++|+|+|.+..|| +|++||+.|+.++..-.. ...++.|++.|+...|.+ ..|++ +....+|||||+
T Consensus 81 ~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDrL---~~sa~~LSGGQQ 155 (253)
T COG1117 81 VDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDRL---HKSALGLSGGQQ 155 (253)
T ss_pred CCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHHh---hCCccCCChhHH
Confidence 467999999999998 899999999987753333 346788999999999965 44554 346779999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||++|||||+.+|+||+||||||+|||.+..+|.+++.+|+ +.-|||+++|.+ ..+.+..|+..++..|++|++|+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnm-qQAaRvSD~taFf~~G~LvE~g~T~ 233 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNM-QQAARVSDYTAFFYLGELVEFGPTD 233 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCH-HHHHHHhHhhhhhcccEEEEEcCHH
Confidence 99999999999999999999999999999999999999998 467888888876 5899999999999999999999999
Q ss_pred HHHH
Q 004932 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
+++.
T Consensus 234 ~iF~ 237 (253)
T COG1117 234 KIFT 237 (253)
T ss_pred hhhc
Confidence 8754
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-46 Score=359.38 Aligned_cols=218 Identities=28% Similarity=0.363 Sum_probs=195.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (723)
+++++++++|+. ..++++||||.++.||+++|+|||||||||+||+|++++.|++ |+|.++|.+... .+
T Consensus 2 l~v~~l~K~y~~----~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~---G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 2 LEVTDLTKSYGS----KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDS---GKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred eeeeehhhhccC----HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCC---ceEEEeecccccChHHHh
Confidence 678899999853 3459999999999999999999999999999999999999985 999999976422 24
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.+|.++.+..++..||++|||.|.+.+.--. ..+.+++++++.+.++|.+++|++++ ++|.|+||||+||||
T Consensus 75 r~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~-~~~~kari~~l~k~l~l~~~~~rRv~------~~S~G~kqkV~iARA 147 (245)
T COG4555 75 RKIGVLFGERGLYARLTARENLKYFARLNGLS-RKEIKARIAELSKRLQLLEYLDRRVG------EFSTGMKQKVAIARA 147 (245)
T ss_pred hhcceecCCcChhhhhhHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHhChHHHHHHHHh------hhchhhHHHHHHHHH
Confidence 67999998899999999999999988764211 12357789999999999999999988 999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHH
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (723)
|+++|++++|||||||||..+...+.+.+++++++|++||+++|.. +++.++||+|++|++|++|+.|+.+++...
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999988875 689999999999999999999999887643
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=406.98 Aligned_cols=269 Identities=24% Similarity=0.305 Sum_probs=217.9
Q ss_pred EEEeCccccccccCCCCcccccccCCCCCCCCCCcchhh--hhccCCceEEEEeEEEEEeccc------ccccceeecee
Q 004932 59 RVEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAV--ARKIAGASVVWKDLTVTIKGKR------RYSDKVVKSSN 130 (723)
Q Consensus 59 ~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~ls~~~~~~~------~~~~~iL~~vs 130 (723)
+++|.|++.+++.+|.||||+.+.++.+........... ......+.++++||++.|..++ .....+++|||
T Consensus 232 ~iVE~G~~~~i~~~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VS 311 (539)
T COG1123 232 EIVETGPTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVS 311 (539)
T ss_pred EEEEecCHHHHHhccCCcccHHHHhhCCCcccccccccccccccccCceeEeeeeeeeeccccccccccccceeeeeeee
Confidence 479999999999999999999997754332111000000 0000345689999999997432 23457999999
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------CCc--eEEEEcCCCccCCCCCHHH
Q 004932 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-------PYG--SYGFVERETTLIGSLTVRE 201 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~-------~~~--~~~yv~Q~~~l~~~lTV~E 201 (723)
|.+++||++||+|+||||||||.|+|+|+.+|++ |+|.++|.+... .++ ++.|+.++..|.|.+||++
T Consensus 312 f~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~---G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~ 388 (539)
T COG1123 312 FDLREGETLGLVGESGSGKSTLARILAGLLPPSS---GSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGD 388 (539)
T ss_pred eEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHH
Confidence 9999999999999999999999999999999975 999999976211 112 3555556678999999999
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 004932 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280 (723)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~ 280 (723)
++..+..........++++++.++++.+||.. .+++ +|++||||||||++|||||+.+|++|++|||||+||+
T Consensus 389 ~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~r------yP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDv 462 (539)
T COG1123 389 ILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDR------YPHELSGGQRQRVAIARALALEPKLLILDEPVSALDV 462 (539)
T ss_pred HHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhc------CchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCH
Confidence 99888765543333346678999999999985 4555 6779999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 281 VSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 281 ~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
..+.+++++|+++++ .|.|.++++|+. ..+.++||||++|++|++|+.|+.+++++
T Consensus 463 svqa~VlnLl~~lq~e~g~t~lfISHDl-~vV~~i~drv~vm~~G~iVE~G~~~~v~~ 519 (539)
T COG1123 463 SVQAQVLNLLKDLQEELGLTYLFISHDL-AVVRYIADRVAVMYDGRIVEEGPTEKVFE 519 (539)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHhhCceEEEEECCeEEEeCCHHHHhc
Confidence 999999999999985 599999977765 68999999999999999999999888764
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=391.05 Aligned_cols=219 Identities=22% Similarity=0.290 Sum_probs=190.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (723)
++++||++.|..+. ..+.+|+|||+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+++..
T Consensus 2 I~~~~lsk~y~~~~-~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~---G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 2 IKLSNITKVFHQGT-KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTS---GSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred EEEEEEEEEECCCC-cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEECCcCCHHHH
Confidence 68999999995321 13479999999999999999999999999999999999999975 999999987532
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004932 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
.++.++|++|+..+++.+||+||+.++..... ....+.++++.++++.+||.+..++. +.+|||||||||+
T Consensus 78 ~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~-~~~~~~~~~v~e~l~~vgL~~~~~~~------~~~LSgGqkQRV~ 150 (343)
T TIGR02314 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN-TPKDEIKRKVTELLALVGLGDKHDSY------PSNLSGGQKQRVA 150 (343)
T ss_pred HHHhcCEEEEECCccccccCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCchhhhCC------hhhCCHHHHHHHH
Confidence 13469999999999999999999998765321 11123456789999999999888774 4599999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
|||||+.+|++|+||||||+||+.++..++++|++++++ |.|||+++|+. +.+.++||+|++|++|++++.|++++++
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999865 99999988886 5788999999999999999999998875
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=391.68 Aligned_cols=218 Identities=24% Similarity=0.379 Sum_probs=192.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (723)
.++++||++.|. ..+.+|+|+|+.+++||+++|+||||||||||||+|+|+.+|++ |+|.++|+++.. ..
T Consensus 3 ~l~i~~l~~~~~----~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~---G~I~~~g~~i~~~~~~~ 75 (356)
T PRK11650 3 GLKLQAVRKSYD----GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITS---GEIWIGGRVVNELEPAD 75 (356)
T ss_pred EEEEEeEEEEeC----CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHHH
Confidence 488999999983 13569999999999999999999999999999999999999875 999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.++||+|+..++|++||+||+.|+...+. ....+.+++++++++.+||.+..++.+ ++|||||||||+||||
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LSgGq~QRvalARA 148 (356)
T PRK11650 76 RDIAMVFQNYALYPHMSVRENMAYGLKIRG-MPKAEIEERVAEAARILELEPLLDRKP------RELSGGQRQRVAMGRA 148 (356)
T ss_pred CCEEEEeCCccccCCCCHHHHHHhHHhhcC-CCHHHHHHHHHHHHHHcCChhHhhCCh------hhCCHHHHHHHHHHHH
Confidence 579999999999999999999999865321 111124567899999999999888755 5999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|+++|++ .++..+||+|++|++|+++..|+++++.+
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVYE 224 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999865 89999999987 57899999999999999999999998754
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=385.10 Aligned_cols=217 Identities=27% Similarity=0.347 Sum_probs=192.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----P 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----~ 180 (723)
.++++||++.|. ++.+|+|||+++++||++||+||||||||||+++|+|+++|++ |+|.++|.+... .
T Consensus 7 ~i~i~~l~k~~~-----~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~---G~v~i~G~~~~~~~~~~ 78 (306)
T PRK13537 7 PIDFRNVEKRYG-----DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDA---GSISLCGEPVPSRARHA 78 (306)
T ss_pred eEEEEeEEEEEC-----CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEecccchHHH
Confidence 589999999994 3579999999999999999999999999999999999999875 999999987532 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHH
Q 004932 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (723)
++.+||++|++.+++.+||+||+.+.+.+.. ....+..++++++++.++|.+..++.++ +|||||||||+||+
T Consensus 79 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~qrl~la~ 151 (306)
T PRK13537 79 RQRVGVVPQFDNLDPDFTVRENLLVFGRYFG-LSAAAARALVPPLLEFAKLENKADAKVG------ELSGGMKRRLTLAR 151 (306)
T ss_pred HhcEEEEeccCcCCCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCchHhcCchh------hCCHHHHHHHHHHH
Confidence 3579999999999999999999987665431 1111234568899999999988888664 99999999999999
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 261 aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+. .++.++||+|++|++|++++.|+++++.+
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999988899999998887 58899999999999999999999998764
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=371.04 Aligned_cols=216 Identities=26% Similarity=0.364 Sum_probs=185.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (723)
++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|++...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~~ 72 (235)
T cd03261 1 IELRGLTKSFG-----GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDS---GEVLIDGEDISGLSEAEL 72 (235)
T ss_pred CeEEEEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccChhhH
Confidence 36899999884 3469999999999999999999999999999999999998875 999999987432
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004932 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
.++.++|++|++.+++.+||+||+.+...........+..+++.++++.++|.+..++.+ .+|||||||||+
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrv~ 146 (235)
T cd03261 73 YRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP------AELSGGMKKRVA 146 (235)
T ss_pred HHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh------hhCCHHHHHHHH
Confidence 124699999999999999999999876432211111123456889999999988777755 499999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
|||||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 99999999999999999999999999999999999987 489999998887 4788999999999999999999887653
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-44 Score=390.30 Aligned_cols=217 Identities=24% Similarity=0.349 Sum_probs=192.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (723)
.++++||++.|. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+. |+|.++|++... ..
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~---G~I~i~g~~~~~~~~~~ 75 (353)
T TIGR03265 4 YLSIDNIRKRFG-----AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTA---GTIYQGGRDITRLPPQK 75 (353)
T ss_pred EEEEEEEEEEeC-----CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHHH
Confidence 589999999984 3569999999999999999999999999999999999999875 999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.++||+|+..+||++||+||+.|+...+.. ...+.+++++++++.++|.++.++.+ ++|||||||||+||||
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~-~~~~~~~~~~~~l~~l~L~~~~~~~~------~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGM-GRAEVAERVAELLDLVGLPGSERKYP------GQLSGGQQQRVALARA 148 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCCchhhCCh------hhCCHHHHHHHHHHHH
Confidence 5799999999999999999999998654311 11234668999999999999888754 5999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|+++|++ .++..+||+|++|++|++++.|+++++.+
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999864 89999999987 58899999999999999999999998864
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-45 Score=349.37 Aligned_cols=211 Identities=24% Similarity=0.321 Sum_probs=187.8
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-------
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------- 178 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~------- 178 (723)
++|+||++.|.+ ++.+|+||||++++||++-|+||||||||||||+|.+...|+. |+|.++|.++.
T Consensus 2 I~f~~V~k~Y~~----g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~---G~i~~~~~dl~~l~~~~i 74 (223)
T COG2884 2 IRFENVSKAYPG----GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTR---GKILVNGHDLSRLKGREI 74 (223)
T ss_pred eeehhhhhhcCC----CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCC---ceEEECCeeccccccccc
Confidence 689999999963 3679999999999999999999999999999999999999985 99999998742
Q ss_pred -CCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004932 179 -MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 179 -~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
..++++|+|+||..|++..||+||+.|+....-. ...+.+++|.++|+.+||.+.++.. |.+|||||||||+
T Consensus 75 P~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~-~~~~i~~rV~~~L~~VgL~~k~~~l------P~~LSGGEQQRva 147 (223)
T COG2884 75 PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGK-PPREIRRRVSEVLDLVGLKHKARAL------PSQLSGGEQQRVA 147 (223)
T ss_pred chhhheeeeEeeeccccccchHhhhhhhhhhccCC-CHHHHHHHHHHHHHHhccchhhhcC------ccccCchHHHHHH
Confidence 1246899999999999999999999998765421 2234678899999999999988774 4599999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
||||++.+|++|+.||||-+|||..+.+|++++.++.+.|+||++.+|+- ..+..+-.|++.|++|+++.+..
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~-~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL-ELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH-HHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999999999999999999999999988875 57778889999999999987653
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-44 Score=388.22 Aligned_cols=217 Identities=25% Similarity=0.434 Sum_probs=192.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (723)
.++++||++.|. ++.+|+|+|+.+++||+++|+||||||||||||+|+|+.+|+. |+|.++|+++.. ..
T Consensus 6 ~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~---G~I~~~g~~i~~~~~~~ 77 (351)
T PRK11432 6 FVVLKNITKRFG-----SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTE---GQIFIDGEDVTHRSIQQ 77 (351)
T ss_pred EEEEEeEEEEEC-----CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHHH
Confidence 689999999984 3569999999999999999999999999999999999999975 999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.++||+|+..++|++||+||+.|+...+.. ...+.+++++++++.++|.++.++. +++|||||||||+||||
T Consensus 78 r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~-~~~~~~~~v~~~l~~~gl~~~~~r~------~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 78 RDICMVFQSYALFPHMSLGENVGYGLKMLGV-PKEERKQRVKEALELVDLAGFEDRY------VDQISGGQQQRVALARA 150 (351)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHHHHhHcCC-CHHHHHHHHHHHHHHcCCchhhcCC------hhhCCHHHHHHHHHHHH
Confidence 6799999999999999999999998654321 1123467899999999999888775 45999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|+.+|++|||||||+|||+.++.++.+.|+++.++ |+|+|+++|++ .++.++||+|++|++|+++..|+++++..
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~~~ 226 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQELYR 226 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999865 89999998887 58899999999999999999999998754
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-45 Score=346.21 Aligned_cols=214 Identities=27% Similarity=0.395 Sum_probs=184.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (723)
+.+++|.+.|. ..-=..++.+.+||++||+||||||||||||+|+|+..|.+ |+|.+||++... ..+
T Consensus 2 l~L~~V~~~y~-------~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~---G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 2 LALDDVRFSYG-------HLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPAS---GEILINGVDHTASPPAER 71 (231)
T ss_pred ccccceEEeeC-------cceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCC---ceEEEcCeecCcCCcccC
Confidence 45667777763 12234677889999999999999999999999999999975 999999997432 236
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004932 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
.+++++|+..+|.++||.+|+-++..-.+.-. ...+++++.++..+||..+.+++++ +|||||||||++||+|
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~-a~~r~~v~~aa~~vGl~~~~~RLP~------~LSGGqRQRvALARcl 144 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSPGLKLN-AEQREKVEAAAAQVGLAGFLKRLPG------ELSGGQRQRVALARCL 144 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCcccccC-HHHHHHHHHHHHHhChhhHhhhCcc------ccCchHHHHHHHHHHH
Confidence 79999999999999999999977643222111 2367789999999999999999776 9999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
+++-+||+||||+|+|||.-+.++..++.+++ +++.|+++++|||. ++.+++|+++++++|||.+.|++++.+.
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 99999999999999999999999999999998 56899999999995 7899999999999999999999887653
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=387.59 Aligned_cols=219 Identities=24% Similarity=0.324 Sum_probs=192.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (723)
.++++||++.|. ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++ .+|+|.++|++... ..
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~-~~G~i~~~g~~~~~~~~~~ 78 (362)
T TIGR03258 5 GIRIDHLRVAYG-----ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG-LTGRIAIADRDLTHAPPHK 78 (362)
T ss_pred EEEEEEEEEEEC-----CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CCEEEEECCEECCCCCHHH
Confidence 589999999994 3469999999999999999999999999999999999998862 23999999987532 13
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.++||+|+..++|.+||+||+.|+...+. ....+.+++++++++.++|.+..++.+ ++|||||||||+||||
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~-~~~~~~~~~v~~~l~~~gL~~~~~~~~------~~LSgGq~QRvaLARA 151 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQK-MPKADIAERVADALKLVGLGDAAAHLP------AQLSGGMQQRIAIARA 151 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhcCCCchhhCCh------hhCCHHHHHHHHHHHH
Confidence 579999999999999999999999865431 111234567999999999999888755 5999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST--GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~--g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|+.+|++|+|||||+|||+.++.++.+.|++++++ |.|+|+++|++ .++..+||+|++|++|+++..|+++++.+
T Consensus 152 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 152 IAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999876 78999988887 57899999999999999999999998864
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=385.79 Aligned_cols=218 Identities=24% Similarity=0.357 Sum_probs=190.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (723)
.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||||+|+|+++|++ |+|.++|++... ..
T Consensus 2 ~L~i~~l~~~~~-----~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~---G~I~i~g~~i~~~~~~~ 73 (353)
T PRK10851 2 SIEIANIKKSFG-----RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTS---GHIRFHGTDVSRLHARD 73 (353)
T ss_pred EEEEEEEEEEeC-----CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHHH
Confidence 478999999984 3569999999999999999999999999999999999999875 999999987532 13
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcC---CCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQL---PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~---~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
+.++||+|+..++|.+||+||+.|+..... .....+.+++++++++.++|.+..++.+ ++|||||||||+|
T Consensus 74 r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~------~~LSgGq~QRval 147 (353)
T PRK10851 74 RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP------AQLSGGQKQRVAL 147 (353)
T ss_pred CCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh------hhCCHHHHHHHHH
Confidence 579999999999999999999998764321 1111124567899999999998887754 5999999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|+++|++ .++..+||+|++|++|++++.|+++++.+
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999865 89999988887 58899999999999999999999998754
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=382.84 Aligned_cols=219 Identities=26% Similarity=0.332 Sum_probs=192.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (723)
..++++||++.|. ++.+|+||||++++||++||+||||||||||+++|+|+++|++ |+|.++|++...
T Consensus 40 ~~i~i~nl~k~y~-----~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~---G~i~i~G~~~~~~~~~ 111 (340)
T PRK13536 40 VAIDLAGVSKSYG-----DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDA---GKITVLGVPVPARARL 111 (340)
T ss_pred eeEEEEEEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCc---eEEEECCEECCcchHH
Confidence 3689999999994 3579999999999999999999999999999999999999875 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (723)
.++.+||++|+..+++.+||.||+.+...... ....+..++++++++.++|.+..++.++ +|||||||||+||
T Consensus 112 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~ll~~~~L~~~~~~~~~------~LS~G~kqrv~lA 184 (340)
T PRK13536 112 ARARIGVVPQFDNLDLEFTVRENLLVFGRYFG-MSTREIEAVIPSLLEFARLESKADARVS------DLSGGMKRRLTLA 184 (340)
T ss_pred HhccEEEEeCCccCCCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCchhhCCChh------hCCHHHHHHHHHH
Confidence 13569999999999999999999987554331 1111234567889999999988887665 9999999999999
Q ss_pred HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHH
Q 004932 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (723)
Q Consensus 260 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (723)
+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+. .++.++||+|++|++|++++.|+++++.+.
T Consensus 185 ~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 185 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999999999988899999998887 588999999999999999999999988653
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=386.40 Aligned_cols=217 Identities=25% Similarity=0.358 Sum_probs=191.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (723)
.++++|+++.|. .+.+|+|+|+.+++||+++|+|||||||||||++|+|+++|+. |+|.++|+++.. ..
T Consensus 14 ~L~l~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~---G~I~~~g~~i~~~~~~~ 85 (375)
T PRK09452 14 LVELRGISKSFD-----GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDS---GRIMLDGQDITHVPAEN 85 (375)
T ss_pred eEEEEEEEEEEC-----CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHHH
Confidence 589999999984 3569999999999999999999999999999999999999875 999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.++||+|+..++|.+||.||+.|+...+.. ...+.+++++++++.++|.+..++.+ .+|||||||||+||||
T Consensus 86 r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~p------~~LSgGq~QRVaLARa 158 (375)
T PRK09452 86 RHVNTVFQSYALFPHMTVFENVAFGLRMQKT-PAAEITPRVMEALRMVQLEEFAQRKP------HQLSGGQQQRVAIARA 158 (375)
T ss_pred CCEEEEecCcccCCCCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHcCCchhhhCCh------hhCCHHHHHHHHHHHH
Confidence 5799999999999999999999997653311 11124567899999999999888855 4999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|+++|++ .++..++|+|++|++|+++..|+++++.+
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i~~ 234 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREIYE 234 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999864 89999988887 57899999999999999999999988754
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=375.54 Aligned_cols=217 Identities=25% Similarity=0.320 Sum_probs=189.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----P 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----~ 180 (723)
.++++||++.|. ++.+|+|||+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++... .
T Consensus 4 ~i~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 75 (303)
T TIGR01288 4 AIDLVGVSKSYG-----DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDR---GKITVLGEPVPSRARLA 75 (303)
T ss_pred EEEEEeEEEEeC-----CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECcccHHHH
Confidence 589999999984 3569999999999999999999999999999999999998875 999999987532 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHH
Q 004932 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (723)
++.++|++|++.+++.+||+||+.+...... ....+.+++++++++.++|.+..++.++ +|||||||||+|||
T Consensus 76 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~ll~~~~l~~~~~~~~~------~LSgG~~qrv~la~ 148 (303)
T TIGR01288 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFG-MSTREIEAVIPSLLEFARLESKADVRVA------LLSGGMKRRLTLAR 148 (303)
T ss_pred hhcEEEEeccccCCcCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCChhHhcCchh------hCCHHHHHHHHHHH
Confidence 3569999999999999999999986543321 1111234567889999999988877654 99999999999999
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 261 aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++..
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999988899999998987 47889999999999999999999988754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=363.78 Aligned_cols=216 Identities=24% Similarity=0.328 Sum_probs=185.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (723)
++++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|.+ |+|.++|.+....
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 72 (236)
T cd03219 1 LEVRGLTKRFG-----GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTS---GSVLFDGEDITGLPPHEI 72 (236)
T ss_pred CeeeeeEEEEC-----CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---ceEEECCEECCCCCHHHH
Confidence 36789999884 3469999999999999999999999999999999999998874 9999999875321
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCC---------ccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCH
Q 004932 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPG---------FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (723)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~---------~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSG 250 (723)
...++|++|++.+++.+||+||+.+........ ...+..++++++++.+||.+..++.+ ++|||
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSg 146 (236)
T cd03219 73 ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA------GELSY 146 (236)
T ss_pred HhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh------hhCCH
Confidence 235899999999999999999998865432111 01123456889999999988777654 49999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 251 GerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|++++.|
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~ 225 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDM-DVVMSLADRVTVLDQGRVIAEG 225 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEeec
Confidence 999999999999999999999999999999999999999999987889999999987 4788999999999999999999
Q ss_pred ChhHHH
Q 004932 331 ETLACL 336 (723)
Q Consensus 331 ~~~~~~ 336 (723)
+++++.
T Consensus 226 ~~~~~~ 231 (236)
T cd03219 226 TPDEVR 231 (236)
T ss_pred CHHHhc
Confidence 887753
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=359.20 Aligned_cols=213 Identities=27% Similarity=0.366 Sum_probs=184.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (723)
++++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|.+... ..
T Consensus 1 i~~~~~~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (220)
T cd03265 1 IEVENLVKKYG-----DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTS---GRATVAGHDVVREPREVR 72 (220)
T ss_pred CEEEEEEEEEC-----CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEecCcChHHHh
Confidence 46899999884 3469999999999999999999999999999999999998875 999999986432 12
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.++|++|++.+++.+||+||+.+....... ...+.+++++++++.++|.+..++.+ ..|||||||||+||+|
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qr~~la~a 145 (220)
T cd03265 73 RRIGIVFQDLSVDDELTGWENLYIHARLYGV-PGAERRERIDELLDFVGLLEAADRLV------KTYSGGMRRRLEIARS 145 (220)
T ss_pred hcEEEecCCccccccCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHhhCCh------hhCCHHHHHHHHHHHH
Confidence 4689999999999999999999886543211 11123457889999999988877755 4999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 99999999999999999999999999999999876 89999988887 47889999999999999999988765
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-43 Score=362.06 Aligned_cols=217 Identities=23% Similarity=0.343 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (723)
.++++||++.|. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++... ..
T Consensus 2 ~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~ 73 (239)
T cd03296 2 SIEVRNVSKRFG-----DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDS---GTILFGGEDATDVPVQE 73 (239)
T ss_pred EEEEEeEEEEEC-----CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCcCCccc
Confidence 478999999984 3469999999999999999999999999999999999998874 999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-C--ccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLP-G--FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~--~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
+.++|++|++.+++.+||+||+.+....... . ...+..++++++++.+||.+..++.+ .+|||||||||+|
T Consensus 74 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~l 147 (239)
T cd03296 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP------AQLSGGQRQRVAL 147 (239)
T ss_pred cceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh------hhCCHHHHHHHHH
Confidence 4699999999999999999999876533211 0 11123456789999999988777755 4999999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 99999999999999999999999999999999999865 89999999987 4788999999999999999999987753
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-43 Score=357.92 Aligned_cols=216 Identities=29% Similarity=0.367 Sum_probs=183.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (723)
++++|+++.|.+.+ ..+.+|+|+|+.+++||+++|+||||||||||+|+|+|+.+|++ |+|.++|++.....+.++
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~i~ 76 (220)
T cd03293 1 LEVRNVSKTYGGGG-GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTS---GEVLVDGEPVTGPGPDRG 76 (220)
T ss_pred CeEEEEEEEcCCCC-cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECccccCcEE
Confidence 36899999884211 11579999999999999999999999999999999999998874 999999987654446799
Q ss_pred EEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 004932 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (723)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~ 265 (723)
|++|++.+++.+|++||+.+....+.. ......++++++++.++|.+..++.+ .+||||||||++|||||+.+
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 77 YVFQQDALLPWLTVLDNVALGLELQGV-PKAEARERAEELLELVGLSGFENAYP------HQLSGGMRQRVALARALAVD 149 (220)
T ss_pred EEecccccccCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhhhhCCc------ccCCHHHHHHHHHHHHHHcC
Confidence 999999999999999999876543211 11123467889999999988877754 49999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEe--CCeEEEEeChh
Q 004932 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS--NGNTLFFGETL 333 (723)
Q Consensus 266 P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~--~G~iv~~G~~~ 333 (723)
|++|||||||+|||+.++..+.+.|+++.+ .|+|||+++|++. ++.++||++++|+ +|++++.++++
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 999999999999999999999999999975 5899999999874 7888999999999 79999988753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-43 Score=357.07 Aligned_cols=209 Identities=28% Similarity=0.414 Sum_probs=179.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (723)
++++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|.+ |+|.++|++... ..+
T Consensus 1 l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03259 1 LELKGLSKTYG-----SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDS---GEILIDGRDVTGVPPERR 72 (213)
T ss_pred CeeeeeEEEeC-----CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEcCcCchhhc
Confidence 36889999884 3469999999999999999999999999999999999998875 999999987532 234
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004932 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
.++|++|++.+++.+|++||+.+...... ......+++++++++.++|.+..++.+ ..|||||||||+|||||
T Consensus 73 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrl~la~al 145 (213)
T cd03259 73 NIGMVFQDYALFPHLTVAENIAFGLKLRG-VPKAEIRARVRELLELVGLEGLLNRYP------HELSGGQQQRVALARAL 145 (213)
T ss_pred cEEEEcCchhhccCCcHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHcCChhhhhcCh------hhCCHHHHHHHHHHHHH
Confidence 69999999999999999999987643221 111123456889999999998877755 49999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999986 489999988887 4788999999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-43 Score=384.25 Aligned_cols=217 Identities=28% Similarity=0.412 Sum_probs=190.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (723)
.++++|+++.|. ++.+|+|+|+++++||+++|+||||||||||||+|+|+++|++ |+|.++|++... ..
T Consensus 3 ~l~i~~l~~~~~-----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~---G~I~~~g~~i~~~~~~~ 74 (369)
T PRK11000 3 SVTLRNVTKAYG-----DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITS---GDLFIGEKRMNDVPPAE 74 (369)
T ss_pred EEEEEEEEEEeC-----CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHhH
Confidence 488999999984 3469999999999999999999999999999999999999875 999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.++|++|+..+++.+||+||+.|....+.. ...+.+++++++++.+||.+..++.+ .+|||||||||+||||
T Consensus 75 ~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~lgL~~~~~~~~------~~LSgGq~QRvaLAra 147 (369)
T PRK11000 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGA-KKEEINQRVNQVAEVLQLAHLLDRKP------KALSGGQRQRVAIGRT 147 (369)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHhHHhhcCC-CHHHHHHHHHHHHHHcCChhhhcCCh------hhCCHHHHHHHHHHHH
Confidence 5699999999999999999999987643311 11224567899999999998887755 4999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|+++|++ .++.++||++++|++|+++..|+++++..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999864 89999998887 47889999999999999999999988754
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-43 Score=382.68 Aligned_cols=217 Identities=22% Similarity=0.347 Sum_probs=191.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (723)
.++++|+++.+. ++.+|+|+|+.+++||+++|+||||||||||||+|+|+.+|+. |+|.++|+++.. .+
T Consensus 19 ~l~l~~v~~~~~-----~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~---G~I~i~g~~i~~~~~~~ 90 (377)
T PRK11607 19 LLEIRNLTKSFD-----GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTA---GQIMLDGVDLSHVPPYQ 90 (377)
T ss_pred eEEEEeEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHHH
Confidence 589999999984 3469999999999999999999999999999999999999875 999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.+||++|+..+||++||.||+.|+...+.. ...+.+++++++++.++|.+..++. +++|||||||||+||||
T Consensus 91 r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~-~~~~~~~~v~~~l~~l~L~~~~~~~------~~~LSgGq~QRVaLARA 163 (377)
T PRK11607 91 RPINMMFQSYALFPHMTVEQNIAFGLKQDKL-PKAEIASRVNEMLGLVHMQEFAKRK------PHQLSGGQRQRVALARS 163 (377)
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhcCC------hhhCCHHHHHHHHHHHH
Confidence 5799999999999999999999987654321 1123456789999999999888775 45999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|+.+|++|||||||++||+.++..+.+.|+++.+ .|.|+|+++|++ .++..++|++++|++|+++..|+++++.+
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999875 589999988887 58899999999999999999999998764
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=365.93 Aligned_cols=227 Identities=24% Similarity=0.302 Sum_probs=193.1
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-C-CCCceeEEEECCEeCC-----
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-H-SARMYGEVFVNGAKSE----- 178 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~-~-~~~~~G~I~i~G~~~~----- 178 (723)
++++||++.|.... +..++++||||++++||++||+|.|||||||+.++|+|+++ + ....+|+|.++|+++-
T Consensus 2 L~v~nL~v~f~~~~-g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 2 LEVKNLSVSFPTDA-GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred ceEeeeEEEEecCC-ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 67999999996432 24579999999999999999999999999999999999997 4 3345789999998631
Q ss_pred ----CCCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHH
Q 004932 179 ----MPYGSYGFVERET--TLIGSLTVREYLYYSALLQLPG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (723)
Q Consensus 179 ----~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGG 251 (723)
...+.+++++|++ .|.|.+||.+.+.......... ...+..+++.++|+.+||.+-.... +.||++||||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~---~~YPhelSGG 157 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRL---KSYPHELSGG 157 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHH---hhCCcccCCc
Confidence 1234799999995 7999999999998776653322 1223466789999999998765443 4589999999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 252 erqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
|||||.||.||+.+|++||.||||++||...+.+|+++|+++++ .|.++|++||+. ..+.++||||+||..|++|+.|
T Consensus 158 MrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl-~vva~~aDri~VMYaG~iVE~g 236 (316)
T COG0444 158 MRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL-GVVAEIADRVAVMYAGRIVEEG 236 (316)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceEEEEECcEEEEeC
Confidence 99999999999999999999999999999999999999999996 689999988776 5899999999999999999999
Q ss_pred ChhHHHH
Q 004932 331 ETLACLQ 337 (723)
Q Consensus 331 ~~~~~~~ 337 (723)
++++++.
T Consensus 237 ~~~~i~~ 243 (316)
T COG0444 237 PVEEIFK 243 (316)
T ss_pred CHHHHhc
Confidence 9998764
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=362.21 Aligned_cols=218 Identities=26% Similarity=0.356 Sum_probs=190.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~------ 178 (723)
.+.++|+++.|++ ...+|+|+|+.+++||.++|+|+||||||||+++|+|+++|+. |+|.++|.+..
T Consensus 3 ~i~~~~l~~~y~~----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~---G~v~~~g~~~~~~~~~~ 75 (235)
T COG1122 3 MIEAENLSFRYPG----RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS---GEVLVDGLDTSSEKSLL 75 (235)
T ss_pred eEEEEEEEEEcCC----CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCC---CEEEECCeeccchhhHH
Confidence 5789999999953 2589999999999999999999999999999999999999975 99999998743
Q ss_pred CCCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH
Q 004932 179 MPYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (723)
Q Consensus 179 ~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (723)
..++.+|||+|++ +++ .-||.|.+.|+..-. +....+.+++++++++.+|+.+.+++ .++.|||||||||
T Consensus 76 ~~~~~vG~VfQnpd~q~~-~~tV~~evafg~~n~-g~~~~e~~~rv~~~l~~vgl~~~~~r------~p~~LSGGqkqRv 147 (235)
T COG1122 76 ELRQKVGLVFQNPDDQLF-GPTVEDEVAFGLENL-GLPREEIEERVAEALELVGLEELLDR------PPFNLSGGQKQRV 147 (235)
T ss_pred HhhcceEEEEECcccccc-cCcHHHHHhhchhhc-CCCHHHHHHHHHHHHHHcCchhhccC------CccccCCcceeeH
Confidence 2346799999986 444 569999999986432 22222467889999999999999877 4569999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 257 ~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
+||.+|+.+|++|+|||||||||+..+..+++.+++|.++ |+|+|+++|+. ..+..+|||+++|++|+++++|++.++
T Consensus 148 aIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~-~~~~~~ad~v~vl~~G~i~~~g~p~~i 226 (235)
T COG1122 148 AIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAEI 226 (235)
T ss_pred HhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcH-HHHHhhCCEEEEEECCEEeecCCHHHH
Confidence 9999999999999999999999999999999999999977 68999988876 689999999999999999999999887
Q ss_pred HHH
Q 004932 336 LQH 338 (723)
Q Consensus 336 ~~~ 338 (723)
++.
T Consensus 227 ~~~ 229 (235)
T COG1122 227 FND 229 (235)
T ss_pred hhh
Confidence 653
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=368.94 Aligned_cols=264 Identities=23% Similarity=0.303 Sum_probs=221.1
Q ss_pred EEEeCccccccccCCCCcccccccCCCCCCCCCCcchhhhhccCCceEEEEeEEEEEecccc------cccceeeceeeE
Q 004932 59 RVEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR------YSDKVVKSSNGY 132 (723)
Q Consensus 59 ~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~------~~~~iL~~vs~~ 132 (723)
+++|.|.+...++.|.||||+.++++.+...+.+... ..+..++.+|+.+.|+.++. ....++++||++
T Consensus 235 ~ivE~~~t~~lF~~PqHpYTr~Ll~aeP~g~~~p~~~-----~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~ 309 (534)
T COG4172 235 EIVETGTTETLFAAPQHPYTRKLLAAEPSGDPPPLPE-----DAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLT 309 (534)
T ss_pred EEeecCcHHHHhhCCCChHHHHHHhcCCCCCCCCCCC-----CCCceEEecceEEEEecCCccccccchheEEeccceeE
Confidence 4799999999999999999999988654332222111 13457899999999875421 234689999999
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--------CCceEEEEcCCC--ccCCCCCHHHH
Q 004932 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--------PYGSYGFVERET--TLIGSLTVREY 202 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~~yv~Q~~--~l~~~lTV~E~ 202 (723)
+++||.++|+|.||||||||-.+|.+++++. |+|.++|+++.. .++++-.|+||+ .|.|.+||.|.
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~----G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qI 385 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQ----GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQI 385 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcCcC----ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHH
Confidence 9999999999999999999999999999875 999999987531 134577888886 79999999999
Q ss_pred HHHHHHhcCCCc-cchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 004932 203 LYYSALLQLPGF-FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281 (723)
Q Consensus 203 l~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~ 281 (723)
+..+.....+.. ..++++++.++|+++||+.... +.||++.|||||||++|||||+.+|++++||||||+||-.
T Consensus 386 I~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r-----~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~S 460 (534)
T COG4172 386 IEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR-----NRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRS 460 (534)
T ss_pred hhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh-----hcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHH
Confidence 998887765432 2347889999999999975432 3378899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 282 SALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 282 ~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
.+.+|+++|++|. +.|.+-++++|+. ..+..+||+|+||++|+||+.|+++++++
T Consensus 461 VQaQvv~LLr~LQ~k~~LsYLFISHDL-~VvrAl~~~viVm~~GkiVE~G~~~~if~ 516 (534)
T COG4172 461 VQAQVLDLLRDLQQKHGLSYLFISHDL-AVVRALCHRVIVMRDGKIVEQGPTEAVFA 516 (534)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHHhhceEEEEeCCEEeeeCCHHHHhc
Confidence 9999999999998 5689999977765 68999999999999999999999998864
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-43 Score=357.69 Aligned_cols=207 Identities=24% Similarity=0.301 Sum_probs=178.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (723)
++++|+++.|+++ .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++...
T Consensus 2 l~~~~l~~~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 75 (216)
T TIGR00960 2 IRFEQVSKAYPGG---HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTR---GKIRFNGQDLTRLRGREI 75 (216)
T ss_pred eEEEEEEEEecCC---CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEehhhcChhHH
Confidence 6799999998421 2469999999999999999999999999999999999998874 999999987531
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004932 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
.++.++|++|++.+++.+||.||+.+....... .....+++++++++.+||.+..++.+ .+|||||||||+
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrv~ 148 (216)
T TIGR00960 76 PFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGV-PPRDANERVSAALEKVGLEGKAHALP------MQLSGGEQQRVA 148 (216)
T ss_pred HHHHHhceEEecCccccccccHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCChhhhhCCh------hhCCHHHHHHHH
Confidence 124689999999999999999999886543211 11124567889999999988877754 499999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ +++.++||++++|++|++
T Consensus 149 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 149 IARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999987899999988887 478889999999999974
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-43 Score=371.06 Aligned_cols=232 Identities=22% Similarity=0.296 Sum_probs=192.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (723)
++++|+++.|..+....+.+|+|||+.+++||+++|+||||||||||+++|+|+++|++ |+|.++|.++..
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~~ 78 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE---GKVTVGDIVVSSTSKQKE 78 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCC---cEEEECCEECcccccccc
Confidence 68999999995322122469999999999999999999999999999999999999875 999999987531
Q ss_pred ---CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCCHHHH
Q 004932 180 ---PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGER 253 (723)
Q Consensus 180 ---~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGer 253 (723)
.++.++||+|++ .+++ .||.||+.|..... .....+.++++.++++.++|. +..++ .++.||||||
T Consensus 79 ~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~------~~~~LSgGqk 150 (288)
T PRK13643 79 IKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF-GIPKEKAEKIAAEKLEMVGLADEFWEK------SPFELSGGQM 150 (288)
T ss_pred HHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCChhhccC------CcccCCHHHH
Confidence 124689999986 5555 69999998875432 111122456789999999996 46665 4459999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||||++|++|++++.|+++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~ 229 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGTPS 229 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999988899999999987 5788999999999999999999999
Q ss_pred HHHH---HhhhcCCCCCCC
Q 004932 334 ACLQ---HFSNAGFPCPIM 349 (723)
Q Consensus 334 ~~~~---~f~~~g~~~~~~ 349 (723)
++.+ .+...|+.+|..
T Consensus 230 ~~~~~~~~~~~~~~~~p~~ 248 (288)
T PRK13643 230 DVFQEVDFLKAHELGVPKA 248 (288)
T ss_pred HHHcCHHHHHHcCCCCChH
Confidence 8753 344567766543
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-43 Score=359.34 Aligned_cols=215 Identities=23% Similarity=0.361 Sum_probs=185.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (723)
++++||++.|. ++.+|+|+|+.+++||+++|+||||||||||||+|+|+++|++ |+|.++|++...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03218 1 LRAENLSKRYG-----KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDS---GKILLDGQDITKLPMHKR 72 (232)
T ss_pred CeEEEEEEEeC-----CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEecccCCHhHH
Confidence 36899999984 3469999999999999999999999999999999999998875 999999986421
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (723)
.++.++|++|++.+++.+||+||+.+....... ......++++++++.+++.+..++.+ +.|||||||||+||
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~la 145 (232)
T cd03218 73 ARLGIGYLPQEASIFRKLTVEENILAVLEIRGL-SKKEREEKLEELLEEFHITHLRKSKA------SSLSGGERRRVEIA 145 (232)
T ss_pred HhccEEEecCCccccccCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCChhhhhCCh------hhCCHHHHHHHHHH
Confidence 123589999999999999999999876433211 11123456789999999988777754 49999999999999
Q ss_pred HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 260 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. ++.++||++++|++|++++.|+.+++.
T Consensus 146 ~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 146 RALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 9999999999999999999999999999999999888999999999874 788999999999999999999887653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=378.64 Aligned_cols=220 Identities=23% Similarity=0.298 Sum_probs=189.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (723)
++++||++.|..++ ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+++...
T Consensus 2 i~i~~l~~~y~~~~-~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~---G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 2 IELKNISKVFPQGG-RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTS---GRVLVDGQDLTALSEKEL 77 (343)
T ss_pred EEEEeEEEEeCCCC-CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECCcCCHHHH
Confidence 68999999995211 13579999999999999999999999999999999999999875 9999999875321
Q ss_pred ---CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004932 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
++.++|++|++.+++.+||+||+.+....... ...+.+++++++++.+||.+..++.+ ++|||||||||+
T Consensus 78 ~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LSgGq~qRv~ 150 (343)
T PRK11153 78 RKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGT-PKAEIKARVTELLELVGLSDKADRYP------AQLSGGQKQRVA 150 (343)
T ss_pred HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhhCCh------hhCCHHHHHHHH
Confidence 24699999999999999999999887543211 11123467889999999998877754 499999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999864 89999998887 4788999999999999999999988875
Q ss_pred H
Q 004932 337 Q 337 (723)
Q Consensus 337 ~ 337 (723)
.
T Consensus 230 ~ 230 (343)
T PRK11153 230 S 230 (343)
T ss_pred h
Confidence 3
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=348.39 Aligned_cols=218 Identities=23% Similarity=0.396 Sum_probs=193.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.+..+||.++|+ +++++++||+.+++||+++|+|||||||||.+.++.|+.+|++ |+|.++|.++..
T Consensus 4 ~L~a~~l~K~y~-----kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~---G~i~ld~~diT~lPm~~ 75 (243)
T COG1137 4 TLVAENLAKSYK-----KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS---GKILLDDEDITKLPMHK 75 (243)
T ss_pred EEEehhhhHhhC-----CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCC---ceEEECCcccccCChHH
Confidence 588999999984 5689999999999999999999999999999999999999986 999999988642
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCcc-chHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004932 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF-CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
.+..+||+||+...|..+||+||+......+..... .+++.+++++|+++++.+++++.-. .||||||+|+.
T Consensus 76 RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~------sLSGGERRR~E 149 (243)
T COG1137 76 RARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAY------SLSGGERRRVE 149 (243)
T ss_pred HhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCccc------ccccchHHHHH
Confidence 123689999999999999999999877666542211 2345568899999999999988543 89999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|||||+.+|+.++||||++|.||.+..+|.++++.|++.|..|++|-|.- .+...+|||.+++++|+++++|+++++.+
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNV-REtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNV-RETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccH-HHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 99999999999999999999999999999999999999999999977765 58889999999999999999999999864
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=358.77 Aligned_cols=219 Identities=23% Similarity=0.301 Sum_probs=186.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (723)
++++|+++.|.++. ..+++|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|+++...
T Consensus 2 i~~~~l~~~~~~~~-~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 2 IELKNVSKVFGDTG-GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTS---GSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred eEEecceEEccCCC-CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEcccCCHHHH
Confidence 67899999984210 11279999999999999999999999999999999999999875 9999999875321
Q ss_pred ---CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004932 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
.+.++|++|++.+++.+|++||+.+....+. .......+.+.++++.++|.+..++.+ ..|||||||||+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~ 150 (233)
T cd03258 78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG-VPKAEIEERVLELLELVGLEDKADAYP------AQLSGGQKQRVG 150 (233)
T ss_pred HHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCChhhhhcCh------hhCCHHHHHHHH
Confidence 2469999999999999999999987654321 111123456889999999988877754 499999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999865 89999999987 4788999999999999999999887653
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=359.27 Aligned_cols=216 Identities=23% Similarity=0.335 Sum_probs=186.0
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (723)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~-----~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 2 IEFKNVSKHFG-----PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITS---GDLIVDGLKVNDPKVDER 73 (240)
T ss_pred EEEEeEEEEEC-----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCcCChhHH
Confidence 67999999884 3469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
.++.++|++|++.+++.+||+||+.+.............++++.++++.+||.+..++.+ +.||||||||++|
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G~~qrv~l 147 (240)
T PRK09493 74 LIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP------SELSGGQQQRVAI 147 (240)
T ss_pred HHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcCh------hhcCHHHHHHHHH
Confidence 124689999999999999999999875421111111123456889999999988777754 4999999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEI-GFAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 9999999999999999999999999999999999987899999999987 4788899999999999999999987754
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=353.13 Aligned_cols=209 Identities=24% Similarity=0.387 Sum_probs=180.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (723)
++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++... ..+
T Consensus 1 i~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~v~~~g~~~~~~~~~~~ 72 (213)
T cd03301 1 VELENVTKRFG-----NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTS---GRIYIGGRDVTDLPPKDR 72 (213)
T ss_pred CEEEeeEEEEC-----CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCcCCcccc
Confidence 36899999884 3469999999999999999999999999999999999998875 999999987532 124
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004932 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
.++|++|++.+++.+|++||+.+...... ....+.+++++++++.+|+.+..++.+ +.||||||||++|||+|
T Consensus 73 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qr~~laral 145 (213)
T cd03301 73 DIAMVFQNYALYPHMTVYDNIAFGLKLRK-VPKDEIDERVREVAELLQIEHLLDRKP------KQLSGGQRQRVALGRAI 145 (213)
T ss_pred eEEEEecChhhccCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCHHHHhCCh------hhCCHHHHHHHHHHHHH
Confidence 69999999999999999999987644321 111123456889999999988887755 49999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999986 489999999987 4788999999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-43 Score=358.11 Aligned_cols=214 Identities=25% Similarity=0.338 Sum_probs=181.1
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC-----CCCCCceeEEEECCEeCCC-
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-----PHSARMYGEVFVNGAKSEM- 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~-----~~~~~~~G~I~i~G~~~~~- 179 (723)
++++||++.+. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+. +|. +|+|.++|++...
T Consensus 1 i~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~ 72 (227)
T cd03260 1 IELRDLNVYYG-----DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDL 72 (227)
T ss_pred CEEEEEEEEcC-----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhc
Confidence 36899999884 346999999999999999999999999999999999998 776 4999999987421
Q ss_pred ------CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHH
Q 004932 180 ------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253 (723)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGer 253 (723)
.++.++|++|++.++ .+||+||+.+.............+++++++++.+||.+..++.+. +.+||||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~~LSgG~~ 147 (227)
T cd03260 73 DVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH----ALGLSGGQQ 147 (227)
T ss_pred chHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC----cccCCHHHH
Confidence 124699999999888 799999998765432111111134678899999999887766420 359999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
|||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ +|||+++|++ .++.++||++++|++|++++.|+++
T Consensus 148 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (227)
T cd03260 148 QRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNM-QQAARVADRTAFLLNGRLVEFGPTE 225 (227)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccH-HHHHHhCCEEEEEeCCEEEEecCcc
Confidence 9999999999999999999999999999999999999999877 8999999987 4788899999999999999999876
Q ss_pred H
Q 004932 334 A 334 (723)
Q Consensus 334 ~ 334 (723)
+
T Consensus 226 ~ 226 (227)
T cd03260 226 Q 226 (227)
T ss_pred c
Confidence 4
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=367.14 Aligned_cols=222 Identities=23% Similarity=0.324 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++||++.|.......+.+|+|||+++++||++||+||||||||||+++|+|+++|+. |+|.++|++...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS---GKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCc---cEEEECCEECCCcCccH
Confidence 378999999985322112479999999999999999999999999999999999999875 999999987532
Q ss_pred --CCceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc--hHhhhhhcCCCCCCCCCHHHHH
Q 004932 180 --PYGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCGERR 254 (723)
Q Consensus 180 --~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~ig~~~~~~~LSGGerq 254 (723)
.++.+||++|++. .+...||+||+.+..... .....+..++++++++.+||. +..++ .++.|||||||
T Consensus 79 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~~~LSgGq~q 151 (287)
T PRK13637 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL-GLSEEEIENRVKRAMNIVGLDYEDYKDK------SPFELSGGQKR 151 (287)
T ss_pred HHHhhceEEEecCchhccccccHHHHHHhHHHHC-CCCHHHHHHHHHHHHHHcCCCchhhccC------CcccCCHHHHH
Confidence 1246999999863 333579999998865432 111122446789999999997 55655 45599999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
|++|||||+.+|++|||||||+|||+.++..+.++|++++++ |+|||+++|+. .++.++||||++|++|++++.|+++
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~~ 230 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQGTPR 230 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999865 89999998886 4788899999999999999999999
Q ss_pred HHHH
Q 004932 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++.+
T Consensus 231 ~~~~ 234 (287)
T PRK13637 231 EVFK 234 (287)
T ss_pred HHHh
Confidence 8754
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=359.72 Aligned_cols=216 Identities=28% Similarity=0.409 Sum_probs=183.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (723)
++++||++.|.+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|++....
T Consensus 1 l~~~~l~~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 73 (241)
T cd03256 1 IEVENLSKTYPN----GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTS---GSVLIDGTDINKLKGKAL 73 (241)
T ss_pred CEEeeEEEecCC----ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCC---ceEEECCEeccccCHhHH
Confidence 368899998842 1569999999999999999999999999999999999998864 9999999875321
Q ss_pred ---CceEEEEcCCCccCCCCCHHHHHHHHHHhc------C-CCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCH
Q 004932 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQ------L-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (723)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~------~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSG 250 (723)
.+.++|++|++.+++.+||+||+.+..... . ........+++.++++.++|.+..++. +.+|||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~LS~ 147 (241)
T cd03256 74 RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR------ADQLSG 147 (241)
T ss_pred HHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC------cccCCH
Confidence 246899999999999999999997753211 0 001112345688899999998777664 459999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 004932 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (723)
Q Consensus 251 GerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (723)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++. ++.++||++++|++|++++.
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~~ 226 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGRIVFD 226 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEee
Confidence 999999999999999999999999999999999999999999986 4899999999874 78889999999999999999
Q ss_pred eChhHH
Q 004932 330 GETLAC 335 (723)
Q Consensus 330 G~~~~~ 335 (723)
|+++++
T Consensus 227 ~~~~~~ 232 (241)
T cd03256 227 GPPAEL 232 (241)
T ss_pred cCHHHh
Confidence 998775
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=360.97 Aligned_cols=217 Identities=24% Similarity=0.313 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++||++.|. ++.+|+|+|+.+++||+++|+||||||||||+++|+|+++|+. |+|.++|++...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 74 (250)
T PRK11264 3 AIEVKNLVKKFH-----GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEA---GTIRVGDITIDTARSLS 74 (250)
T ss_pred cEEEeceEEEEC-----CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEcccccccc
Confidence 478999999984 3469999999999999999999999999999999999998874 999999986431
Q ss_pred --------CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHH
Q 004932 180 --------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (723)
Q Consensus 180 --------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGG 251 (723)
.++.++|++|++.+++.+||.||+.+..............+++.++++.+||.+..++.+ ++||||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G 148 (250)
T PRK11264 75 QQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYP------RRLSGG 148 (250)
T ss_pred chhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCCh------hhCChH
Confidence 124689999999999999999999875432111111123456889999999987776644 599999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004932 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 252 erqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|++++.|+
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~ 227 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM-SFARDVADRAIFMDQGRIVEQGP 227 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999988899999988887 47889999999999999999999
Q ss_pred hhHHH
Q 004932 332 TLACL 336 (723)
Q Consensus 332 ~~~~~ 336 (723)
++++.
T Consensus 228 ~~~~~ 232 (250)
T PRK11264 228 AKALF 232 (250)
T ss_pred HHHHh
Confidence 87764
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=345.39 Aligned_cols=216 Identities=23% Similarity=0.338 Sum_probs=186.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++||+..| +..++|++||+++++||+++|+|+||+|||||||+|+|+.++.+ |+|.++|+++...
T Consensus 3 mL~v~~l~~~Y-----G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~---G~I~~~G~dit~~p~~~ 74 (237)
T COG0410 3 MLEVENLSAGY-----GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRS---GRIIFDGEDITGLPPHE 74 (237)
T ss_pred ceeEEeEeecc-----cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eeEEECCeecCCCCHHH
Confidence 58899999998 35689999999999999999999999999999999999999864 9999999986431
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcC-CchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004932 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS-LSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
+..++||||...+||.|||+|||..++..+.... ..+..++++.+.+- |.+..+++-| .|||||||.++
T Consensus 75 r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~--~~~~~~e~v~~lFP~Lker~~~~aG------~LSGGEQQMLA 146 (237)
T COG0410 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKE--AQERDLEEVYELFPRLKERRNQRAG------TLSGGEQQMLA 146 (237)
T ss_pred HHhCCeEeCcccccchhhCcHHHHHhhhhhcccccc--cccccHHHHHHHChhHHHHhcCccc------CCChHHHHHHH
Confidence 3469999999999999999999987754332211 12222778888875 5677777665 89999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
|||||+.+|++|+|||||.||-|.-..+|.+.|++++++ |.||++ ++|....+.+++||.++|.+|++++.|+++++.
T Consensus 147 iaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlL-VEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 147 IARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILL-VEQNARFALEIADRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred HHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEE-EeccHHHHHHhhCEEEEEeCCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999976 668877 688888999999999999999999999998875
Q ss_pred H
Q 004932 337 Q 337 (723)
Q Consensus 337 ~ 337 (723)
.
T Consensus 226 ~ 226 (237)
T COG0410 226 A 226 (237)
T ss_pred c
Confidence 4
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=382.32 Aligned_cols=217 Identities=27% Similarity=0.383 Sum_probs=189.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++||++.|. ++.+|+|+||.+++||+++|+||||||||||||+|+|+++|.+ |+|.++|++...
T Consensus 3 ~L~~~nls~~y~-----~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~s---G~I~l~G~~i~~~~~~~ 74 (402)
T PRK09536 3 MIDVSDLSVEFG-----DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTA---GTVLVAGDDVEALSARA 74 (402)
T ss_pred eEEEeeEEEEEC-----CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCC---cEEEECCEEcCcCCHHH
Confidence 588999999984 3579999999999999999999999999999999999999875 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhc---CCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQ---LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (723)
..+.++|++|+..+++.+||+||+.++.... ........+++++++++.+|+.+..++.+ ++|||||||||
T Consensus 75 ~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~------~~LSgGerQRv 148 (402)
T PRK09536 75 ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV------TSLSGGERQRV 148 (402)
T ss_pred HhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh------hhCCHHHHHHH
Confidence 1356999999999999999999998753211 11111124567899999999998888755 49999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 257 ~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
+|||||+++|++|||||||+|||+.++.+++++|++++++|+|||+++|++ .++.++|||+++|++|++++.|++++++
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999988899999988887 5888999999999999999999999864
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=355.15 Aligned_cols=213 Identities=24% Similarity=0.374 Sum_probs=182.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (723)
++++||++.|. ++.+|+|+|+.+++||+++|+||||||||||+++|+|+++|+. |+|.++|++...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 72 (222)
T cd03224 1 LEVENLNAGYG-----KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRS---GSIRFDGRDITGLPPHER 72 (222)
T ss_pred CEEeeEEeecC-----CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEcCCCCHHHH
Confidence 46899999884 3469999999999999999999999999999999999999875 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHc-CCchHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM-SLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
..+.++|++|++.+++.+|++||+.+...... ..+.++++.++++.+ ++.+..++.+ +.||||||||++|
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~l~~~~~l~~~~~~~~------~~LS~G~~qrv~l 143 (222)
T cd03224 73 ARAGIGYVPEGRRIFPELTVEENLLLGAYARR---RAKRKARLERVYELFPRLKERRKQLA------GTLSGGEQQMLAI 143 (222)
T ss_pred HhcCeEEeccccccCCCCcHHHHHHHHhhhcC---chhHHHHHHHHHHHHHhhhhhhhCch------hhCCHHHHHHHHH
Confidence 12459999999999999999999987654321 112345577788888 5776666644 5999999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 144 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 144 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999999999999999988889999998887 4788999999999999999999887653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=372.09 Aligned_cols=229 Identities=23% Similarity=0.271 Sum_probs=190.8
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++||++.|..++ +...+|+|||+++++||+++|+|+||||||||+++|+|+++|+...+|+|.++|+++...
T Consensus 11 ~~L~i~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 11 ALLDVKDLRVTFSTPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred ceEEEeCeEEEEecCC-CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 3689999999996321 235699999999999999999999999999999999999987522359999999875321
Q ss_pred ------CceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHH
Q 004932 181 ------YGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (723)
Q Consensus 181 ------~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe 252 (723)
.+.++||+|++ .++|.+|+.+++.+...........+..+++.++++.+||.+..+. . +.++++|||||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~-~--~~~p~~LSgG~ 166 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKR-M--KMYPHEFSGGM 166 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHH-h--cCCcccCCHHH
Confidence 13699999997 7899999999997765433221112245678899999999754333 1 34778999999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004932 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
||||+|||||+.+|++||+||||+|||+.++.+++++|++++++ |.|+|+++|+. ..+.++||+|++|++|++++.|+
T Consensus 167 ~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri~vm~~G~ive~g~ 245 (330)
T PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKVLVMYAGRTMEYGN 245 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999865 89999988887 47888999999999999999999
Q ss_pred hhHHHH
Q 004932 332 TLACLQ 337 (723)
Q Consensus 332 ~~~~~~ 337 (723)
++++.+
T Consensus 246 ~~~i~~ 251 (330)
T PRK09473 246 ARDVFY 251 (330)
T ss_pred HHHHHh
Confidence 988764
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=363.83 Aligned_cols=217 Identities=21% Similarity=0.309 Sum_probs=186.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++||++.|. ++.+|+|||+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|++...
T Consensus 7 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (269)
T PRK11831 7 LVDMRGVSFTRG-----NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDH---GEILFDGENIPAMSRSR 78 (269)
T ss_pred eEEEeCeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEccccChhh
Confidence 589999999883 3569999999999999999999999999999999999998874 999999986531
Q ss_pred ---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH
Q 004932 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (723)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (723)
..+.++|++|+..+++.+||.||+.+.............++++.++++.+||.+..++.+ ..|||||||||
T Consensus 79 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgGq~qrv 152 (269)
T PRK11831 79 LYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMP------SELSGGMARRA 152 (269)
T ss_pred HHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCCh------hhCCHHHHHHH
Confidence 124689999999999999999999876432111111123456788999999988877754 49999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 257 ~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+++++
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999865 89999988886 578899999999999999999998876
Q ss_pred H
Q 004932 336 L 336 (723)
Q Consensus 336 ~ 336 (723)
.
T Consensus 232 ~ 232 (269)
T PRK11831 232 Q 232 (269)
T ss_pred h
Confidence 4
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=372.26 Aligned_cols=206 Identities=27% Similarity=0.327 Sum_probs=181.1
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----CceEEEEcCCCccCCCC
Q 004932 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----YGSYGFVERETTLIGSL 197 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~----~~~~~yv~Q~~~l~~~l 197 (723)
++.+|+|+|+.+++||++||+||||||||||+|+|+|+++|++ |+|.++|++.... ++.++|++|++.+++.+
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTS---GTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 3569999999999999999999999999999999999999875 9999999875321 24699999999999999
Q ss_pred CHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 004932 198 TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYH 277 (723)
Q Consensus 198 TV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsg 277 (723)
||+||+.+.+.++.. .....+++++++++.+||.+..++.++ .|||||||||+||+||+.+|++|||||||+|
T Consensus 82 tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 82 TGRENLEMMGRLYGL-PKDEAEERAEELLELFELGEAADRPVG------TYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred cHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhHhCCchh------hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999999886654311 111235578999999999988877654 9999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHH
Q 004932 278 LDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (723)
Q Consensus 278 LD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (723)
||+.++..+.+.|++++++|+|||+++|++ .++.++||+|++|++|++++.|+++++.+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999988899999998887 588899999999999999999999887653
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=372.64 Aligned_cols=224 Identities=23% Similarity=0.272 Sum_probs=189.2
Q ss_pred ceEEEEeEEEEEecccc--------cccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 004932 104 ASVVWKDLTVTIKGKRR--------YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~--------~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~ 175 (723)
..++++||++.|..++. ....+|+|||+++++||+++|+|+||||||||+++|+|+++|++ |+|.++|+
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~---G~I~~~G~ 83 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATD---GEVAWLGK 83 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCC---cEEEECCE
Confidence 46899999999953211 13569999999999999999999999999999999999998864 99999998
Q ss_pred eCCC--------CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCC-CccchHHHHHHHHHHHcCCc-hHhhhhhcCCC
Q 004932 176 KSEM--------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLS-DYANKLIGGHC 243 (723)
Q Consensus 176 ~~~~--------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~ 243 (723)
++.. .++.++||+|++ .++|.+||.||+.+......+ ....+.+++++++++.++|. +..++
T Consensus 84 ~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~------ 157 (331)
T PRK15079 84 DLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINR------ 157 (331)
T ss_pred ECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcC------
Confidence 7532 124699999997 689999999999886543211 11122456788999999994 45555
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEe
Q 004932 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLS 322 (723)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (723)
++++|||||||||+|||||+.+|++||+||||+|||+.++.+++++|++++++ |.|+|+++|+. ..+.++||+|++|+
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~~~~~~dri~vl~ 236 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AVVKHISDRVLVMY 236 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 56699999999999999999999999999999999999999999999999864 89999988886 57888999999999
Q ss_pred CCeEEEEeChhHHHH
Q 004932 323 NGNTLFFGETLACLQ 337 (723)
Q Consensus 323 ~G~iv~~G~~~~~~~ 337 (723)
+|++++.|+++++.+
T Consensus 237 ~G~ive~g~~~~i~~ 251 (331)
T PRK15079 237 LGHAVELGTYDEVYH 251 (331)
T ss_pred CCEEEEEcCHHHHHc
Confidence 999999999988753
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=353.60 Aligned_cols=215 Identities=27% Similarity=0.383 Sum_probs=183.8
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (723)
++++||++.|.+. .+++|+|+|+.+++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+... ..
T Consensus 1 l~~~~l~~~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (220)
T cd03263 1 LQIRNLTKTYKKG---TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTS---GTAYINGYSIRTDRKAAR 74 (220)
T ss_pred CEEEeeEEEeCCC---CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEecccchHHHh
Confidence 4689999988421 2579999999999999999999999999999999999998875 999999987532 12
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.++|++|++.+++.+||+||+.+....... ...+..++++++++.++|.+..++.+ .+||||||||++||||
T Consensus 75 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~la~a 147 (220)
T cd03263 75 QSLGYCPQFDALFDELTVREHLRFYARLKGL-PKSEIKEEVELLLRVLGLTDKANKRA------RTLSGGMKRKLSLAIA 147 (220)
T ss_pred hhEEEecCcCCccccCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHhChh------hhCCHHHHHHHHHHHH
Confidence 4699999999999999999999876543211 11123456889999999988877755 4999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999999976 589999888874 78889999999999999999987753
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=377.53 Aligned_cols=206 Identities=26% Similarity=0.339 Sum_probs=181.3
Q ss_pred cccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------CceEEEEcCCC
Q 004932 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---------YGSYGFVERET 191 (723)
Q Consensus 121 ~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---------~~~~~yv~Q~~ 191 (723)
+.+.+|+|+||++++||+++|+|||||||||||++|+|+++|++ |+|.++|+++... ++.++||+|+.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~---G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTA---GQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCc---eEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 34569999999999999999999999999999999999999975 9999999875421 35799999999
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 004932 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFI 271 (723)
Q Consensus 192 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlL 271 (723)
.++|.+||+||+.+...... ....+..+++.++++.+||.+..++.+ .+|||||||||+|||||+.+|++|||
T Consensus 81 ~l~~~~TV~eNi~~~~~~~~-~~~~~~~~~~~~~l~~vgL~~~~~~~p------~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELLG-WPEQERKEKALELLKLVGLEEYEHRYP------DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred cCCCCCCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhcCCchhhhCCh------hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999998765431 111234567899999999998887754 59999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 272 DEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 272 DEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
||||+|||+.++..+.+.|+++++ .|+|||+++|+. .++.++||+|++|++|+++..|+++++..
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 999999999999999999999985 489999988887 57889999999999999999999988754
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=368.91 Aligned_cols=216 Identities=26% Similarity=0.335 Sum_probs=189.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++|++++|. ++.+|+|+|+.+++||++||+||||||||||+|+|+|+++|+. |+|.++|++....
T Consensus 2 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~---G~i~i~g~~~~~~~~~~ 73 (301)
T TIGR03522 2 SIRVSSLTKLYG-----TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDS---GSVQVCGEDVLQNPKEV 73 (301)
T ss_pred EEEEEEEEEEEC-----CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEcccChHHH
Confidence 478999999994 3569999999999999999999999999999999999999875 9999999875321
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHH
Q 004932 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (723)
++.+||++|++.+++.+||.||+.+.+.+... ...+..++++++++.+||.+..++.++ .|||||||||+||+
T Consensus 74 ~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~~~------~LS~G~~qrv~la~ 146 (301)
T TIGR03522 74 QRNIGYLPEHNPLYLDMYVREYLQFIAGIYGM-KGQLLKQRVEEMIELVGLRPEQHKKIG------QLSKGYRQRVGLAQ 146 (301)
T ss_pred HhceEEecCCCCCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHCCCchHhcCchh------hCCHHHHHHHHHHH
Confidence 34699999999999999999999887654311 111235578999999999998887654 99999999999999
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 261 aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||||++|++|++++.|+++++..
T Consensus 147 al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 147 ALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999975 79999988887 58999999999999999999999998765
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=367.07 Aligned_cols=220 Identities=23% Similarity=0.294 Sum_probs=185.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++||++.|.+.+...+++|+|||+++++||+++|+||||||||||+++|+|+++|+. |+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS---GTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEECCEECccccccc
Confidence 378999999995322122569999999999999999999999999999999999999875 999999987531
Q ss_pred ----CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCCHHH
Q 004932 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (723)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGe 252 (723)
..+.++|++|++ .++ ..||.||+.|..... .....+.+++++++++.+||. +..++. ++.|||||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~~LSgGq 150 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF-GVSEEDAKQKAREMIELVGLPEELLARS------PFELSGGQ 150 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCChhhhhCC------cccCCHHH
Confidence 124699999986 455 479999998875422 111112345789999999996 566664 45999999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004932 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
||||+|||||+.+|++|||||||+|||+.++..+.++|++++++ |.|||+++|++ .++.++||||++|++|++++.|+
T Consensus 151 ~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv~~l~~G~i~~~g~ 229 (290)
T PRK13634 151 MRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQIVVMHKGTVFLQGT 229 (290)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999864 89999998887 47889999999999999999999
Q ss_pred hhHHH
Q 004932 332 TLACL 336 (723)
Q Consensus 332 ~~~~~ 336 (723)
++++.
T Consensus 230 ~~~~~ 234 (290)
T PRK13634 230 PREIF 234 (290)
T ss_pred HHHHh
Confidence 98875
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=351.25 Aligned_cols=205 Identities=26% Similarity=0.364 Sum_probs=179.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (723)
++++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|.+ |+|.++|++... .++
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 72 (208)
T cd03268 1 LKTNDLTKTYG-----KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDS---GEITFDGKSYQKNIEALR 72 (208)
T ss_pred CEEEEEEEEEC-----CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCCcccchHHHHh
Confidence 36899999883 3479999999999999999999999999999999999998874 999999986432 134
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004932 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
.++|++|++.+++.+||+||+.+...... ..+++++++++.++|.+..++.++ .|||||||||+|||+|
T Consensus 73 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~qrv~la~al 141 (208)
T cd03268 73 RIGALIEAPGFYPNLTARENLRLLARLLG-----IRKKRIDEVLDVVGLKDSAKKKVK------GFSLGMKQRLGIALAL 141 (208)
T ss_pred hEEEecCCCccCccCcHHHHHHHHHHhcC-----CcHHHHHHHHHHcCCHHHHhhhHh------hCCHHHHHHHHHHHHH
Confidence 69999999999999999999987653221 124568899999999988877654 9999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++ .++.++||++++|++|++++.|
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 142 LGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999988889999999887 4788899999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=351.56 Aligned_cols=209 Identities=25% Similarity=0.428 Sum_probs=180.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCceE
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGSY 184 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ 184 (723)
++++|+++.+. ++.+++|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++... .++.+
T Consensus 1 l~~~~l~~~~~-----~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~i 72 (210)
T cd03269 1 LEVENVTKRFG-----RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDS---GEVLFDGKPLDIAARNRI 72 (210)
T ss_pred CEEEEEEEEEC-----CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCCchhHHHHccE
Confidence 36899999884 3469999999999999999999999999999999999998874 999999986532 23569
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 004932 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (723)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~ 264 (723)
+|++|+..+++.+||+||+.+....+.. .....++.++++++.+|+.+..++.+ ++|||||||||+||++|+.
T Consensus 73 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~la~al~~ 145 (210)
T cd03269 73 GYLPEERGLYPKMKVIDQLVYLAQLKGL-KKEEARRRIDEWLERLELSEYANKRV------EELSKGNQQKVQFIAAVIH 145 (210)
T ss_pred EEeccCCcCCcCCcHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHcCChHHHhCcH------hhCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999876543211 11123567889999999988777754 4999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 265 ~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|
T Consensus 146 ~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 146 DPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999999999987789999988887 4788899999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=352.14 Aligned_cols=213 Identities=30% Similarity=0.416 Sum_probs=182.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (723)
++++|+++.|.++. ...++|+|+|+++++||+++|+|+||||||||+++|+|+++|++ |+|.++|++... .+
T Consensus 2 l~~~~v~~~~~~~~-~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 2 ITADALTKRFRDVK-KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA---GFATVDGFDVVKEPAEAR 77 (218)
T ss_pred eEEEEEEEecCCCC-ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCC---ceEEECCEEcccCHHHHH
Confidence 67899999985311 11269999999999999999999999999999999999998875 999999987532 12
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.++|++|++.+++.+||+||+.+....... ...+..++++++++.+||.+..++.++ .||||||||++||||
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~qrv~lara 150 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLYGL-KGDELTARLEELADRLGMEELLDRRVG------GFSTGMRQKVAIARA 150 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHhhhhh------hcCHHHHHHHHHHHH
Confidence 4699999999999999999999876543211 111245678899999999988887654 999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|++ .++.++||++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999987899999999987 4788999999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=368.93 Aligned_cols=221 Identities=20% Similarity=0.244 Sum_probs=185.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~------ 178 (723)
.++++||++.|.++......+|+|||+++++||++||+||||||||||+++|+|+++|+. |+|.++|++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~---G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT---GTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEEeceecccccccc
Confidence 478999999995432223469999999999999999999999999999999999999875 99999986531
Q ss_pred -----------------------CCCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-
Q 004932 179 -----------------------MPYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS- 232 (723)
Q Consensus 179 -----------------------~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~- 232 (723)
...+.+|||+|++ .++ ..||+||+.|+.... .....+..++++++++.+||.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~ 156 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSM-GVSKEEAKKRAAKYIELVGLDE 156 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHcCCCh
Confidence 0124589999985 444 579999998865432 111122456789999999996
Q ss_pred hHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHH
Q 004932 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVF 312 (723)
Q Consensus 233 ~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~ 312 (723)
+..++. +..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+. +.+.
T Consensus 157 ~~~~~~------~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~~ 229 (305)
T PRK13651 157 SYLQRS------PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL-DNVL 229 (305)
T ss_pred hhhhCC------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCH-HHHH
Confidence 677764 459999999999999999999999999999999999999999999999988899999988886 4788
Q ss_pred hcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 313 GLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 313 ~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
++||||++|++|++++.|+++++..
T Consensus 230 ~~adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 230 EWTKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred HhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999988763
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=359.57 Aligned_cols=216 Identities=28% Similarity=0.388 Sum_probs=182.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (723)
++++||++.|.. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++...
T Consensus 2 l~~~~l~~~~~~----~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR02315 2 LEVENLSKVYPN----GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSS---GSILLEGTDITKLRGKKL 74 (243)
T ss_pred eEEEeeeeecCC----CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---cEEEECCEEhhhCCHHHH
Confidence 678999998841 3569999999999999999999999999999999999998874 999999987432
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhc------C-CCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCH
Q 004932 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQ------L-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (723)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~------~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSG 250 (723)
.++.++|++|++.+++.+||+||+.+..... . .......++++.++++.++|.+..++.+ ..|||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSg 148 (243)
T TIGR02315 75 RKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA------DQLSG 148 (243)
T ss_pred HHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc------ccCCH
Confidence 1246999999999999999999997642110 0 0011123467889999999987777644 59999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 004932 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (723)
Q Consensus 251 GerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (723)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++|++++.
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~ 227 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIVGLKAGEIVFD 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEec
Confidence 999999999999999999999999999999999999999999976 489999998987 477889999999999999999
Q ss_pred eChhHH
Q 004932 330 GETLAC 335 (723)
Q Consensus 330 G~~~~~ 335 (723)
|+++++
T Consensus 228 ~~~~~~ 233 (243)
T TIGR02315 228 GAPSEL 233 (243)
T ss_pred CCHHHh
Confidence 988764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-42 Score=361.51 Aligned_cols=216 Identities=26% Similarity=0.318 Sum_probs=184.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++|+++.|+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|++....
T Consensus 4 ~l~~~~l~~~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 76 (274)
T PRK13647 4 IIEVEDLHFRYKD----GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQR---GRVKVMGREVNAENEKW 76 (274)
T ss_pred eEEEEEEEEEeCC----CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCc---eEEEECCEECCCCCHHH
Confidence 5889999999842 2469999999999999999999999999999999999999875 9999999875321
Q ss_pred -CceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 181 -YGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
.+.++|++|++. .++..||.||+.+...... ......+++++++++.+||.+..++.+ ..|||||||||+|
T Consensus 77 ~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~------~~LSgG~~qrv~l 149 (274)
T PRK13647 77 VRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMG-LDKDEVERRVEEALKAVRMWDFRDKPP------YHLSYGQKKRVAI 149 (274)
T ss_pred HHhhEEEEecChhhhhccCcHHHHHHhhHHHcC-CCHHHHHHHHHHHHHHCCCHHHhcCCh------hhCCHHHHHHHHH
Confidence 246999999963 4456899999987643221 111123456889999999988877754 4999999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
||||+.+|++|||||||+|||+.++..+++.|++++++|.|||+++|++ +++.++|||+++|++|++++.|+++++
T Consensus 150 araL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 150 AGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDV-DLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999999999999987799999999987 478889999999999999999998654
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=368.51 Aligned_cols=232 Identities=20% Similarity=0.244 Sum_probs=190.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (723)
..++++|+++.|..+....+.+|+|||+++++||++||+|+||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~---G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY---GTIQVGDIYIGDKKNN 96 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEECCEEccccccc
Confidence 3689999999995322123469999999999999999999999999999999999999875 999999976421
Q ss_pred -----------------CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHhhhhh
Q 004932 180 -----------------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLI 239 (723)
Q Consensus 180 -----------------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~i 239 (723)
.++.++||+|++ .+++ .||+||+.++.... .....+..+++.++++.+||. +..++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~-- 172 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL-GVKKSEAKKLAKFYLNKMGLDDSYLER-- 172 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCChhHhcC--
Confidence 124699999986 5665 59999998865321 111112345788999999996 56665
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEE
Q 004932 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319 (723)
Q Consensus 240 g~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~ 319 (723)
.+.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++ +++.++||+|+
T Consensus 173 ----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~-~~~~~~adri~ 247 (320)
T PRK13631 173 ----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM-EHVLEVADEVI 247 (320)
T ss_pred ----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEE
Confidence 3459999999999999999999999999999999999999999999999988899999999987 46788999999
Q ss_pred EEeCCeEEEEeChhHHHH---HhhhcCCCCC
Q 004932 320 LLSNGNTLFFGETLACLQ---HFSNAGFPCP 347 (723)
Q Consensus 320 vL~~G~iv~~G~~~~~~~---~f~~~g~~~~ 347 (723)
+|++|++++.|+++++.+ .+...|+..|
T Consensus 248 vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 248 VMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred EEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 999999999999988753 2334455543
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=356.77 Aligned_cols=217 Identities=23% Similarity=0.408 Sum_probs=186.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++|+++.|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 74 (241)
T PRK10895 3 TLTAKNLAKAYK-----GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDA---GNIIIDDEDISLLPLHA 74 (241)
T ss_pred eEEEeCcEEEeC-----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHHH
Confidence 478999999984 3469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
.++.++|++|++.+++.+||.||+.+...........+.+.+++++++.+|+.+..++.+ +.|||||||||+|
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~l 148 (241)
T PRK10895 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG------QSLSGGERRRVEI 148 (241)
T ss_pred HHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcch------hhCCHHHHHHHHH
Confidence 124699999999999999999999875432211111123456889999999987776644 4999999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
||||+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 9999999999999999999999999999999999988899999999987 4788999999999999999999987764
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=356.21 Aligned_cols=216 Identities=26% Similarity=0.426 Sum_probs=184.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (723)
++++|+++.|.+ .+.+|+|+|+.+++||+++|+||||||||||+++|+|+++|+. |+|.++|++... .
T Consensus 1 l~~~~l~~~~~~----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 73 (242)
T cd03295 1 IEFENVTKRYGG----GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTS---GEIFIDGEDIREQDPVEL 73 (242)
T ss_pred CEEEEEEEEeCC----cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCeEcCcCChHHh
Confidence 368999998842 1469999999999999999999999999999999999998875 999999987532 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch--HhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD--YANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
++.++|++|++.+++.+||+||+.+...... .......+++.++++.++|.+ ..++. +++|||||||||+|
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~~------~~~LS~G~~qrv~l 146 (242)
T cd03295 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLLK-WPKEKIRERADELLALVGLDPAEFADRY------PHELSGGQQQRVGV 146 (242)
T ss_pred hcceEEEccCccccCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCCcHHHHhcC------hhhCCHHHHHHHHH
Confidence 2468999999999999999999987654321 111223557889999999985 66654 45999999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.++||++++|++|++++.|+++++.
T Consensus 147 aral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 147 ARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999864 899999999874 788999999999999999999887653
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=356.15 Aligned_cols=217 Identities=22% Similarity=0.327 Sum_probs=182.8
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC----
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~--~~~~G~I~i~G~~~~~---- 179 (723)
++++||++.|. ++.+++|+|+.+++||+++|+|+||||||||+|+|+|+++|. ...+|+|.++|++...
T Consensus 2 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~ 76 (247)
T TIGR00972 2 IEIENLNLFYG-----EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76 (247)
T ss_pred EEEEEEEEEEC-----CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccc
Confidence 67899999884 346999999999999999999999999999999999999875 0114999999987532
Q ss_pred ---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc----hHhhhhhcCCCCCCCCCHHH
Q 004932 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPCGE 252 (723)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~~LSGGe 252 (723)
.++.++|++|+..+++ +|+.||+.+....+......+..++++++++.+||. +..++ .++.|||||
T Consensus 77 ~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~LSgG~ 149 (247)
T TIGR00972 77 VVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHD------SALGLSGGQ 149 (247)
T ss_pred hHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhC------CcccCCHHH
Confidence 1246999999998888 999999988654321011112345688999999997 55555 456999999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004932 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ +|+|+++|++ .++.++||++++|++|++++.|++
T Consensus 150 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~ 227 (247)
T TIGR00972 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNM-QQAARISDRTAFFYDGELVEYGPT 227 (247)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999999874 8999988987 478899999999999999999998
Q ss_pred hHHH
Q 004932 333 LACL 336 (723)
Q Consensus 333 ~~~~ 336 (723)
+++.
T Consensus 228 ~~~~ 231 (247)
T TIGR00972 228 EQIF 231 (247)
T ss_pred HHHH
Confidence 7764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-42 Score=369.12 Aligned_cols=223 Identities=20% Similarity=0.223 Sum_probs=188.6
Q ss_pred eEEEEeEEEEEecccc-----cccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC
Q 004932 105 SVVWKDLTVTIKGKRR-----YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~-----~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~ 179 (723)
.++++||++.|..+.. ....+|+|||+.+++||++||+|+||||||||+++|+|+++|.+ |+|.++|+++..
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~---G~i~~~g~~l~~ 81 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTG---GELYYQGQDLLK 81 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCC---cEEEECCEEcCc
Confidence 5899999999963211 13579999999999999999999999999999999999998864 999999987532
Q ss_pred --------CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HhhhhhcCCCCCCCC
Q 004932 180 --------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGL 248 (723)
Q Consensus 180 --------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~L 248 (723)
.++.++||+|++ .++|.+||.+++.+...........+.++++.++++.+||.+ ..++ ++++|
T Consensus 82 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~------~p~~L 155 (327)
T PRK11308 82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDR------YPHMF 155 (327)
T ss_pred CCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcC------CCccC
Confidence 134699999997 689999999999876543211111224567899999999963 4554 56799
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 004932 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (723)
Q Consensus 249 SGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (723)
||||||||+|||||+.+|++||+||||+|||..++.+++++|+++++ .|.|+|+++|+. ..+.++||+|++|++|+++
T Consensus 156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL-SVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999986 489999988886 5788899999999999999
Q ss_pred EEeChhHHHH
Q 004932 328 FFGETLACLQ 337 (723)
Q Consensus 328 ~~G~~~~~~~ 337 (723)
+.|+++++.+
T Consensus 235 e~g~~~~~~~ 244 (327)
T PRK11308 235 EKGTKEQIFN 244 (327)
T ss_pred EECCHHHHhc
Confidence 9999988754
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=369.50 Aligned_cols=228 Identities=21% Similarity=0.223 Sum_probs=187.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEeCCCC---
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-RMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~-~~~G~I~i~G~~~~~~--- 180 (723)
.++++||++.|..+. ....+|+||||++++||++||+|+||||||||+++|+|++++.. ..+|+|.++|+++...
T Consensus 3 ~L~v~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDES-APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCCC-ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 479999999995321 12469999999999999999999999999999999999987421 2369999999875321
Q ss_pred ------CceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHH
Q 004932 181 ------YGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (723)
Q Consensus 181 ------~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe 252 (723)
.+.++||+|++ .++|.+||.+++.............+.++++.++++.+||.+..+.. +.++++|||||
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l---~~~p~~LSgGq 158 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRL---DVYPHQLSGGM 158 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHH---hCCchhCCHHH
Confidence 13599999997 58899999999876554321111123456789999999997532221 23677999999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004932 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
||||+|||||+.+|++||+||||+|||+.++.+++++|+++++ .|.|+|+++|+. ..+.++||||++|++|++++.|+
T Consensus 159 ~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~adri~vm~~G~ive~g~ 237 (326)
T PRK11022 159 SQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEAAHKIIVMYAGQVVETGK 237 (326)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999986 589999988887 47888999999999999999999
Q ss_pred hhHHHH
Q 004932 332 TLACLQ 337 (723)
Q Consensus 332 ~~~~~~ 337 (723)
++++.+
T Consensus 238 ~~~~~~ 243 (326)
T PRK11022 238 AHDIFR 243 (326)
T ss_pred HHHHhh
Confidence 988754
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=352.58 Aligned_cols=208 Identities=29% Similarity=0.369 Sum_probs=176.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (723)
++++||++.|++.+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|++...
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 76 (218)
T cd03255 1 IELKNLSKTYGGGG-EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTS---GEVRVDGTDISKLSEKEL 76 (218)
T ss_pred CeEeeeEEEecCCC-cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCc---eeEEECCEehhhcchhHH
Confidence 36899999985211 11579999999999999999999999999999999999998874 999999987532
Q ss_pred ---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH
Q 004932 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (723)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (723)
..+.++|++|++.+++.+||+||+.+....+.. .....+++++++++.+||.+..++.+ +.|||||||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv 149 (218)
T cd03255 77 AAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGV-PKKERRERAEELLERVGLGDRLNHYP------SELSGGQQQRV 149 (218)
T ss_pred HHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHcCCchhhhcCh------hhcCHHHHHHH
Confidence 124699999999999999999999886543211 11123457889999999988877754 49999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004932 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 257 ~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||+++|++. ++. +||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999999999999987 5899999999975 565 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=362.68 Aligned_cols=215 Identities=25% Similarity=0.327 Sum_probs=183.9
Q ss_pred EEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------
Q 004932 107 VWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------- 179 (723)
Q Consensus 107 ~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------- 179 (723)
.++|+++.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++...
T Consensus 26 ~~~~~~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~---G~i~i~g~~~~~~~~~~~~ 97 (269)
T cd03294 26 SKEEILKKTG-----QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTS---GKVLIDGQDIAAMSRKELR 97 (269)
T ss_pred hhhhhhhhcC-----CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEccccChhhhh
Confidence 4667777763 4579999999999999999999999999999999999998875 999999986431
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004932 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
..+.++|++|++.+++.+||+||+.+....... ......++++++++.+||.+..++.+ ++|||||||||+
T Consensus 98 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~Gq~qrv~ 170 (269)
T cd03294 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGV-PRAEREERAAEALELVGLEGWEHKYP------DELSGGMQQRVG 170 (269)
T ss_pred hhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCHhHhhCCc------ccCCHHHHHHHH
Confidence 124699999999999999999999886543211 11123456889999999998887755 499999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 171 lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 171 LARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999975 489999998987 4788999999999999999999988764
Q ss_pred H
Q 004932 337 Q 337 (723)
Q Consensus 337 ~ 337 (723)
+
T Consensus 250 ~ 250 (269)
T cd03294 250 T 250 (269)
T ss_pred h
Confidence 3
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-42 Score=357.96 Aligned_cols=217 Identities=25% Similarity=0.274 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++||++.|. ++.+|+|+|+.+++||+++|+|+||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~ 76 (257)
T PRK10619 5 KLNVIDLHKRYG-----EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSE---GSIVVNGQTINLVRDKD 76 (257)
T ss_pred cEEEeeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEcccccccc
Confidence 589999999984 3569999999999999999999999999999999999998875 999999986421
Q ss_pred -------------CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHh-hhhhcCCCCC
Q 004932 180 -------------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYA-NKLIGGHCYM 245 (723)
Q Consensus 180 -------------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~ig~~~~~ 245 (723)
..+.++|++|++.+++.+||+||+.+.............++++.++++.+|+.+.. ++ .+
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~------~~ 150 (257)
T PRK10619 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGK------YP 150 (257)
T ss_pred cccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhC------Cc
Confidence 12468999999999999999999987542111111122456788999999998764 55 34
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 004932 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (723)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (723)
.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++|||+++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQGK 229 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCE
Confidence 59999999999999999999999999999999999999999999999988899999988887 47888999999999999
Q ss_pred EEEEeChhHHH
Q 004932 326 TLFFGETLACL 336 (723)
Q Consensus 326 iv~~G~~~~~~ 336 (723)
+++.|++++..
T Consensus 230 i~~~~~~~~~~ 240 (257)
T PRK10619 230 IEEEGAPEQLF 240 (257)
T ss_pred EEEeCCHHHhh
Confidence 99999987754
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-42 Score=355.33 Aligned_cols=215 Identities=24% Similarity=0.310 Sum_probs=184.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.+.++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++ |+|.++|++...
T Consensus 2 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 73 (242)
T PRK11124 2 SIQLNGINCFYG-----AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRS---GTLNIAGNHFDFSKTPS 73 (242)
T ss_pred EEEEEeeEEEEC-----CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEecccccccc
Confidence 478999999984 3469999999999999999999999999999999999998875 999999986420
Q ss_pred ------CCceEEEEcCCCccCCCCCHHHHHHHHH-HhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHH
Q 004932 180 ------PYGSYGFVERETTLIGSLTVREYLYYSA-LLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (723)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~-~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe 252 (723)
.++.++|++|++.+++.+||.||+.+.. ... .....+..+++.++++.+|+.+..++.+ ..|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G~ 146 (242)
T PRK11124 74 DKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL-GLSKDQALARAEKLLERLRLKPYADRFP------LHLSGGQ 146 (242)
T ss_pred hhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhhhhCCh------hhCCHHH
Confidence 1246899999999999999999996532 221 1111123456889999999988777754 4999999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004932 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++ .++.++||++++|++|++++.|++
T Consensus 147 ~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~i~~~~~~ 225 (242)
T PRK11124 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDA 225 (242)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999987899999999987 477889999999999999999987
Q ss_pred hHH
Q 004932 333 LAC 335 (723)
Q Consensus 333 ~~~ 335 (723)
++.
T Consensus 226 ~~~ 228 (242)
T PRK11124 226 SCF 228 (242)
T ss_pred HHh
Confidence 653
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=348.19 Aligned_cols=218 Identities=25% Similarity=0.331 Sum_probs=191.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++||++.+ +...+++|||+++++||+++|+||||||||||+|+|+|.++|++ |+|.++|+++...
T Consensus 4 lL~v~~l~k~F-----GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~---G~v~~~G~~it~l~p~~ 75 (250)
T COG0411 4 LLEVRGLSKRF-----GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSS---GTVIFRGRDITGLPPHR 75 (250)
T ss_pred eeeeccceeec-----CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCC---ceEEECCcccCCCCHHH
Confidence 57899999999 45789999999999999999999999999999999999999986 9999999976421
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhc--------CCCc---cchHHHHHHHHHHHcCCchHhhhhhcCCCCCCC
Q 004932 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQ--------LPGF---FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~--------~~~~---~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~ 247 (723)
+..++--+|...+|+.|||.||+..++..+ .+.. ..+..++..++|+.+||.+.+++..+ +
T Consensus 76 iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~------~ 149 (250)
T COG0411 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG------N 149 (250)
T ss_pred HHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh------c
Confidence 235788899999999999999998875532 1111 12245678899999999999999776 9
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004932 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 248 LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
||+|||||+.|||||+++|++|+||||.+||.+....++.+.|+++++ .|.||+++-|+. ..++.+||||+||+.|++
T Consensus 150 LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM-~~Vm~l~dri~Vl~~G~~ 228 (250)
T COG0411 150 LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDM-KLVMGLADRIVVLNYGEV 228 (250)
T ss_pred CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEecc-HHHhhhccEEEeccCCcC
Confidence 999999999999999999999999999999999999999999999997 468888866654 689999999999999999
Q ss_pred EEEeChhHHHH
Q 004932 327 LFFGETLACLQ 337 (723)
Q Consensus 327 v~~G~~~~~~~ 337 (723)
+++|+|+++.+
T Consensus 229 IAeG~P~eV~~ 239 (250)
T COG0411 229 IAEGTPEEVRN 239 (250)
T ss_pred cccCCHHHHhc
Confidence 99999999864
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-42 Score=363.36 Aligned_cols=221 Identities=21% Similarity=0.272 Sum_probs=185.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++||++.|..+....+.+|+|||+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT---GTVTVDDITITHKTKDK 78 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEECccccccc
Confidence 478999999995322123469999999999999999999999999999999999999875 999999987532
Q ss_pred ----CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCCHHH
Q 004932 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (723)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGe 252 (723)
.++.+||++|++ .+++ .||.||+.+...... ....+..++++++++.+||. +..++. ++.|||||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~~LSgGq 150 (286)
T PRK13646 79 YIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFK-MNLDEVKNYAHRLLMDLGFSRDVMSQS------PFQMSGGQ 150 (286)
T ss_pred hHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcC-CCHHHHHHHHHHHHHHcCCChhhhhCC------cccCCHHH
Confidence 124699999985 4555 599999988653321 11112456788999999996 566664 45999999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004932 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
||||+|||||+.+|++|||||||+|||+.++..+.++|+++++ .|+|||+++|++ +++.++||++++|++|++++.|+
T Consensus 151 ~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dri~~l~~G~i~~~g~ 229 (286)
T PRK13646 151 MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADEVIVMKEGSIVSQTS 229 (286)
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999985 589999999987 47888999999999999999999
Q ss_pred hhHHHH
Q 004932 332 TLACLQ 337 (723)
Q Consensus 332 ~~~~~~ 337 (723)
++++.+
T Consensus 230 ~~~~~~ 235 (286)
T PRK13646 230 PKELFK 235 (286)
T ss_pred HHHHHh
Confidence 988754
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-42 Score=361.31 Aligned_cols=228 Identities=22% Similarity=0.294 Sum_probs=190.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++|+++.|.+. ..+.+|+|+|+++++||++||+||||||||||+++|+|+++|.. |+|.++|++...
T Consensus 4 ~l~~~~l~~~~~~~--~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13650 4 IIEVKNLTFKYKED--QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAES---GQIIIDGDLLTEENVWD 78 (279)
T ss_pred eEEEEeEEEEcCCC--CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEECCcCcHHH
Confidence 48899999999521 12459999999999999999999999999999999999999875 999999987532
Q ss_pred CCceEEEEcCCC-ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 180 PYGSYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 180 ~~~~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
.++.++|++|++ ..++..||+||+.+..... .....+..++++++++.+||.+..++.+ ..||||||||++|
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LSgGq~qrv~l 151 (279)
T PRK13650 79 IRHKIGMVFQNPDNQFVGATVEDDVAFGLENK-GIPHEEMKERVNEALELVGMQDFKEREP------ARLSGGQKQRVAI 151 (279)
T ss_pred HHhhceEEEcChHHhcccccHHHHHHhhHHhC-CCCHHHHHHHHHHHHHHCCCHhHhhCCc------ccCCHHHHHHHHH
Confidence 124689999997 4677789999998864322 1111124567899999999998887754 4999999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|++. ++ ..||++++|++|+++..|+++++..
T Consensus 152 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13650 152 AGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRELFS 229 (279)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHHc
Confidence 99999999999999999999999999999999999875 999999999975 55 5799999999999999999988753
Q ss_pred ---HhhhcCCCC
Q 004932 338 ---HFSNAGFPC 346 (723)
Q Consensus 338 ---~f~~~g~~~ 346 (723)
.++..|+++
T Consensus 230 ~~~~~~~~~~~~ 241 (279)
T PRK13650 230 RGNDLLQLGLDI 241 (279)
T ss_pred ChHHHHHcCCCC
Confidence 233445543
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=362.27 Aligned_cols=221 Identities=21% Similarity=0.217 Sum_probs=185.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.+.++|+++.|.++....+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS---GTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEECccccccc
Confidence 478999999985221112469999999999999999999999999999999999999875 999999987531
Q ss_pred ----CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCCHHH
Q 004932 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (723)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGe 252 (723)
.++.++|++|++ .++ .+||.||+.+...... ....+..++++++++.+||. +..++.+ ++|||||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~~------~~LSgGq 150 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFG-FSEDEAKEKALKWLKKVGLSEDLISKSP------FELSGGQ 150 (287)
T ss_pred hHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCChhHhhCCc------ccCCHHH
Confidence 124689999996 355 5899999987653321 11122445788999999997 6777654 4999999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004932 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|++++.|++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNM-DDVAEYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999987899999988886 578899999999999999999998
Q ss_pred hHHHH
Q 004932 333 LACLQ 337 (723)
Q Consensus 333 ~~~~~ 337 (723)
+++.+
T Consensus 230 ~~~~~ 234 (287)
T PRK13641 230 KEIFS 234 (287)
T ss_pred HHHhc
Confidence 87653
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=348.36 Aligned_cols=206 Identities=26% Similarity=0.304 Sum_probs=176.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (723)
++++|+++.|.+ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|+++..
T Consensus 1 l~~~~l~~~~~~----~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~i~~~~~~~~ 73 (214)
T cd03292 1 IEFINVTKTYPN----GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTS---GTIRVNGQDVSDLRGRAI 73 (214)
T ss_pred CEEEEEEEEeCC----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEcccCCHHHH
Confidence 368999998842 2469999999999999999999999999999999999998874 999999987532
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004932 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
.++.++|++|++.+++.+|++||+.+....+. ....+.+++++++++.+||.+..++.+ .+||||||||++
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~ 146 (214)
T cd03292 74 PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG-VPPREIRKRVPAALELVGLSHKHRALP------AELSGGEQQRVA 146 (214)
T ss_pred HHHHHheEEEecCchhccCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHHHhhCCh------hhcCHHHHHHHH
Confidence 12469999999999999999999988654321 111123457889999999988777754 499999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++ ..+.++||++++|++|++
T Consensus 147 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~-~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 147 IARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAK-ELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999987799999999987 477889999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=355.36 Aligned_cols=216 Identities=25% Similarity=0.338 Sum_probs=184.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (723)
++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+++..
T Consensus 1 i~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~i~~~~~~~~ 72 (252)
T TIGR03005 1 VRFSDVTKRFG-----ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDE---GQIQVEGEQLYHMPGRNG 72 (252)
T ss_pred CEEEEEEEEeC-----CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccccccc
Confidence 36899999984 3469999999999999999999999999999999999998874 999999986521
Q ss_pred ------------CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCC
Q 004932 180 ------------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247 (723)
Q Consensus 180 ------------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~ 247 (723)
.++.++|++|++.+++.+|+.||+.+.............++.+.++++.+|+.+..++.+ .+
T Consensus 73 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~ 146 (252)
T TIGR03005 73 PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMP------AQ 146 (252)
T ss_pred cccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcCh------hh
Confidence 134699999999999999999999875321111111123456889999999988777644 59
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004932 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 248 LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|+++|++ .++.++||++++|++|++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i 225 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GFAREFADRVCFFDKGRI 225 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999864 89999999987 478889999999999999
Q ss_pred EEEeChhHHH
Q 004932 327 LFFGETLACL 336 (723)
Q Consensus 327 v~~G~~~~~~ 336 (723)
++.|+.+++.
T Consensus 226 ~~~g~~~~~~ 235 (252)
T TIGR03005 226 VEQGKPDEIF 235 (252)
T ss_pred EEeCCHHHHh
Confidence 9999887664
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=355.50 Aligned_cols=212 Identities=26% Similarity=0.331 Sum_probs=182.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (723)
++++|+++.|. ++.+|+|+|+.+++||+++|+||||||||||+++|+|+++|++ |+|.++|++.......++
T Consensus 2 l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYG-----GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQH---GSITLDGKPVEGPGAERG 73 (255)
T ss_pred EEEEEEEEEeC-----CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCCcEE
Confidence 67999999884 3469999999999999999999999999999999999998875 999999987643334689
Q ss_pred EEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 004932 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (723)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~ 265 (723)
|++|++.+++.+||.||+.+...... .......++++++++.+||.+..++.+ .+|||||||||+|||||+.+
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgGq~qrl~laral~~~ 146 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAG-VEKMQRLEIAHQMLKKVGLEGAEKRYI------WQLSGGQRQRVGIARALAAN 146 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHcCChhHhhCCh------hhCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999987643221 111123457889999999988777644 49999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEe--CCeEEEEeChh
Q 004932 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS--NGNTLFFGETL 333 (723)
Q Consensus 266 P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~--~G~iv~~G~~~ 333 (723)
|++|||||||+|||+.++..+.+.|+++++ +|+|||+++|++ .++.++||++++|+ +|+++..++.+
T Consensus 147 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 147 PQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 999999999999999999999999999964 589999998887 47889999999998 59999887653
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=347.87 Aligned_cols=205 Identities=24% Similarity=0.331 Sum_probs=176.8
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (723)
++++|+++.+.+ ++.+|+|+|+.+++||+++|+||||||||||+++|+|+++|.. |+|.++|+++..
T Consensus 2 l~~~~l~~~~~~----~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (214)
T TIGR02673 2 IEFHNVSKAYPG----GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSR---GQVRIAGEDVNRLRGRQL 74 (214)
T ss_pred EEEEeeeEEeCC----CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEcccCCHHHH
Confidence 678999998831 2469999999999999999999999999999999999998864 999999987532
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004932 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
..+.++|++|++.+++.+||.||+.+...... ......+++++++++.++|.+..++.+ ..|||||||||+
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~ 147 (214)
T TIGR02673 75 PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG-KKEREIQRRVGAALRQVGLEHKADAFP------EQLSGGEQQRVA 147 (214)
T ss_pred HHHHhheEEEecChhhccCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCChhhhhCCh------hhCCHHHHHHHH
Confidence 12468999999999999999999988654321 111123467889999999988777654 499999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (723)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|+
T Consensus 148 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 148 IARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999999987899999999987 47888999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-42 Score=356.87 Aligned_cols=208 Identities=26% Similarity=0.355 Sum_probs=182.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (723)
..++++||++.|. ++.+|+|+|+.+++||+++|+||||||||||+|+|+|+++|++ |+|.++|.+.....+.
T Consensus 11 ~~l~i~~l~~~~~-----~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~---G~i~~~g~~~~~~~~~ 82 (257)
T PRK11247 11 TPLLLNAVSKRYG-----ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSA---GELLAGTAPLAEARED 82 (257)
T ss_pred CcEEEEEEEEEEC-----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEHHHhhCc
Confidence 3589999999984 3569999999999999999999999999999999999998875 9999999875433457
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 004932 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (723)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~ 263 (723)
++|++|++.+++.+||+||+.+... . ..++++.++++.+||.+..++.+ ..|||||||||+|||+|+
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~----~---~~~~~~~~~l~~~gl~~~~~~~~------~~LSgGqkqrl~laraL~ 149 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLK----G---QWRDAALQALAAVGLADRANEWP------AALSGGQKQRVALARALI 149 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhccc----c---hHHHHHHHHHHHcCChhHhcCCh------hhCCHHHHHHHHHHHHHh
Confidence 9999999999998999999976421 1 12456789999999988777654 499999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 264 ~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||+++|++. ++.++||++++|++|++++.|+.+
T Consensus 150 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 150 HRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999999999965 5899999888874 678899999999999999988653
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=350.61 Aligned_cols=215 Identities=26% Similarity=0.381 Sum_probs=183.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (723)
++++|+++.+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|+.+|++ |+|.++|.++.. ..
T Consensus 2 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 2 LEVAGLSFAYG-----ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQE---GQISVAGHDLRRAPRAAL 73 (236)
T ss_pred EEEEeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCEEcccCChhhh
Confidence 67899999884 3469999999999999999999999999999999999998875 999999986532 12
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.++|++|++.+++.+|++||+.+...... .......+.+.++++.+||.+..++.+ ..||||||||++||||
T Consensus 74 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G~~qrl~lara 146 (236)
T TIGR03864 74 ARLGVVFQQPTLDLDLSVRQNLRYHAALHG-LSRAEARERIAALLARLGLAERADDKV------RELNGGHRRRVEIARA 146 (236)
T ss_pred hhEEEeCCCCCCcccCcHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCChhhhcCCh------hhCCHHHHHHHHHHHH
Confidence 469999999988889999999987654321 111123456889999999988777654 4999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|+.+|++|||||||+|||+.++..+.+.|+++++ +|.|+|+++|++. ++. .||++++|++|++++.|+++++.+
T Consensus 147 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 147 LLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHHHHH
Confidence 9999999999999999999999999999999985 5899999999885 555 499999999999999999877654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=349.69 Aligned_cols=215 Identities=24% Similarity=0.268 Sum_probs=181.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++||++.|+.+. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|+++...
T Consensus 5 ~l~~~~l~~~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 5 LLQCDNLCKRYQEGS-VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTS---GDVIFNGQPMSKLSSAA 80 (233)
T ss_pred eEEEEeEEEEcCCCC-cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEcCcCCHHH
Confidence 589999999985311 12469999999999999999999999999999999999998874 9999999875321
Q ss_pred -----CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004932 181 -----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
.+.++|++|+..+++.+|++||+.+...... ....+.++++.++++.+||.+..++.+ ++||||||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgG~~qr 153 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGK-KKPAEINSRALEMLAAVGLEHRANHRP------SELSGGERQR 153 (233)
T ss_pred HHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCchhhhCCh------hhCCHHHHHH
Confidence 1469999999999999999999988654321 111123467889999999988777654 4999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||+++|++. ++.. +|++++|++|++++.|+.
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHh-hCEEEEEECCEEEEEecc
Confidence 9999999999999999999999999999999999999975 5899999999874 5555 579999999999988763
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-42 Score=352.69 Aligned_cols=214 Identities=19% Similarity=0.288 Sum_probs=183.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++|+++.|. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+++|++ |+|.++|++...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~ 76 (237)
T PRK11614 5 MLSFDKVSAHYG-----KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATS---GRIVFDGKDITDWQTAK 76 (237)
T ss_pred EEEEEeEEEeeC-----CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---ceEEECCEecCCCCHHH
Confidence 588999999884 3579999999999999999999999999999999999998875 999999987532
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHc-CCchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004932 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM-SLSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
..+.++|++|+..+++.+||.||+.+..... . ..+..+.++++++.+ ++.+..++. ++.||||||||++
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~-~~~~~~~~~~~l~~~~~l~~~~~~~------~~~LS~G~~qrl~ 147 (237)
T PRK11614 77 IMREAVAIVPEGRRVFSRMTVEENLAMGGFFA--E-RDQFQERIKWVYELFPRLHERRIQR------AGTMSGGEQQMLA 147 (237)
T ss_pred HHHhCEEEeccCcccCCCCcHHHHHHHhhhcc--C-hhHHHHHHHHHHHHHHHHHHHHhCc------hhhCCHHHHHHHH
Confidence 1246999999999999999999998754221 1 112334567778887 476666553 4599999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 148 la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 148 IGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA-NQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred HHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 99999999999999999999999999999999999988899999998887 4788999999999999999999988764
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=347.60 Aligned_cols=201 Identities=21% Similarity=0.327 Sum_probs=172.2
Q ss_pred EEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCceEE
Q 004932 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYG 185 (723)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~~~~ 185 (723)
++|+++.|.+ .+.+|+|+|+++++||+++|+|||||||||||++|+|+++|++ |+|.++|++... ..+.++
T Consensus 2 ~~~l~~~~~~----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~i~ 74 (205)
T cd03226 2 IENISFSYKK----GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESS---GSILLNGKPIKAKERRKSIG 74 (205)
T ss_pred cccEEEEeCC----cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEhhhHHhhcceE
Confidence 6789988842 1579999999999999999999999999999999999998875 999999987532 234699
Q ss_pred EEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 004932 186 FVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (723)
Q Consensus 186 yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~ 264 (723)
|++|++. .+..+||+||+.+..... . ...++++++++.+||.+..++.+ .+||||||||++|||||+.
T Consensus 75 ~~~q~~~~~~~~~tv~e~l~~~~~~~--~---~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~laral~~ 143 (205)
T cd03226 75 YVMQDVDYQLFTDSVREELLLGLKEL--D---AGNEQAETVLKDLDLYALKERHP------LSLSGGQKQRLAIAAALLS 143 (205)
T ss_pred EEecChhhhhhhccHHHHHhhhhhhc--C---ccHHHHHHHHHHcCCchhcCCCc------hhCCHHHHHHHHHHHHHHh
Confidence 9999974 344679999998754321 1 12356889999999998877654 4999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 004932 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (723)
Q Consensus 265 ~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (723)
+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++ .++.++||++++|++|++|
T Consensus 144 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 144 GKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999999987899999999987 4788899999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-42 Score=346.95 Aligned_cols=206 Identities=27% Similarity=0.342 Sum_probs=176.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (723)
++++|+++.|. ++.+|+++|+.+++||+++|+||||||||||+|+|+|+++|+. |+|.++|++...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03262 1 IEIKNLHKSFG-----DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDS---GTIIIDGLKLTDDKKNIN 72 (213)
T ss_pred CEEEEEEEEEC-----CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCccchhHH
Confidence 36899999984 3469999999999999999999999999999999999998875 999999987531
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
..+.++|++|++.+++.+|+.||+.+...........+.+++++++++.+|+.+..++.+ ++||||||||++|
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~l 146 (213)
T cd03262 73 ELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP------AQLSGGQQQRVAI 146 (213)
T ss_pred HHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCc------cccCHHHHHHHHH
Confidence 124699999999999999999999876431111111123456889999999988777754 4999999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999999988889999988887 578899999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=355.04 Aligned_cols=217 Identities=22% Similarity=0.292 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++|+++.+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+....
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~ 76 (255)
T PRK11300 5 LLSVSGLMMRFG-----GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTG---GTILLRGQHIEGLPGHQ 76 (255)
T ss_pred eEEEeeEEEEEC-----CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCc---ceEEECCEECCCCCHHH
Confidence 589999999884 3579999999999999999999999999999999999998875 9999999875321
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcC-----------CC-c-c-chHHHHHHHHHHHcCCchHhhhhhcCCCC
Q 004932 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQL-----------PG-F-F-CQRKNVVEDAIHAMSLSDYANKLIGGHCY 244 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-----------~~-~-~-~~~~~~v~~~l~~lgL~~~~~~~ig~~~~ 244 (723)
...++|++|++.+++.+||+||+.+...... +. . . .+..+.++++++.+||.+..++.+
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 151 (255)
T PRK11300 77 IARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA----- 151 (255)
T ss_pred HHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh-----
Confidence 2348999999999999999999987542110 00 0 0 012346788899999988777754
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeC
Q 004932 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSN 323 (723)
Q Consensus 245 ~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (723)
++|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++
T Consensus 152 -~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 152 -GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVVNQ 229 (255)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 499999999999999999999999999999999999999999999999875 89999988887 478899999999999
Q ss_pred CeEEEEeChhHHH
Q 004932 324 GNTLFFGETLACL 336 (723)
Q Consensus 324 G~iv~~G~~~~~~ 336 (723)
|++++.|+++++.
T Consensus 230 g~i~~~~~~~~~~ 242 (255)
T PRK11300 230 GTPLANGTPEEIR 242 (255)
T ss_pred CeEEecCCHHHHh
Confidence 9999999987754
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=346.42 Aligned_cols=207 Identities=29% Similarity=0.420 Sum_probs=177.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----C
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----Y 181 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~----~ 181 (723)
++++|+++.+. ++.+|+|+|+++++| +++|+||||||||||+++|+|+++|++ |+|.++|++.... .
T Consensus 1 i~~~~~~~~~~-----~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 71 (211)
T cd03264 1 LQLENLTKRYG-----KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSS---GTIRIDGQDVLKQPQKLR 71 (211)
T ss_pred CEEEEEEEEEC-----CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCCccccchHHHH
Confidence 36899999884 346999999999999 999999999999999999999998875 9999999764321 3
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.++|++|++.+++.+||.||+.+....... ...+..++++++++.++|.+..++.+ ..|||||||||+||||
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~la~a 144 (211)
T cd03264 72 RRIGYLPQEFGVYPNFTVREFLDYIAWLKGI-PSKEVKARVDEVLELVNLGDRAKKKI------GSLSGGMRRRVGIAQA 144 (211)
T ss_pred hheEEecCCCcccccCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHCCCHHHHhCch------hhCCHHHHHHHHHHHH
Confidence 4689999999999999999999876543211 11123456889999999988877654 4999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
|+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|+++|++ .++.+++|++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIV-EDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999986 58999988887 4778899999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=347.90 Aligned_cols=214 Identities=27% Similarity=0.304 Sum_probs=176.0
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (723)
++++||++.|.++. ....+|+|+|+++++||+++|+|||||||||||++|+|+++|+. |+|.++|+++..
T Consensus 2 l~~~~v~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 2 LEVKNLSVSFPTGG-GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTS---GSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred eEEEeeeEeccCCC-cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEccccchhhH
Confidence 67899999984211 11269999999999999999999999999999999999998875 999999987532
Q ss_pred --CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHH-HHHHHHHcCCc-hHhhhhhcCCCCCCCCCHHHH
Q 004932 180 --PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNV-VEDAIHAMSLS-DYANKLIGGHCYMKGLPCGER 253 (723)
Q Consensus 180 --~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGer 253 (723)
.++.++|++|++ .+++.+||+||+.+..............+. ++++++.+++. +..++.+ ..||||||
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LS~G~~ 151 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYP------HELSGGQR 151 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCc------hhcCHHHH
Confidence 124699999998 567789999999876543221111111122 35788999995 5666644 49999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|+++..|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999999999875 89999999987 4778899999999999998764
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-42 Score=378.95 Aligned_cols=229 Identities=25% Similarity=0.320 Sum_probs=198.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-ARMYGEVFVNGAKSE----- 178 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~-~~~~G~I~i~G~~~~----- 178 (723)
.++++||+++|... .....+++||||++.+||++||+|.|||||||++++|.|++++. ...+|+|.++|++.-
T Consensus 5 lL~V~nL~v~~~~~-~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 5 LLEVENLTVEFATD-GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred eEEEeceEEEEecC-CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 68999999999754 23357999999999999999999999999999999999999876 345799999998531
Q ss_pred ----CCCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHH
Q 004932 179 ----MPYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (723)
Q Consensus 179 ----~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe 252 (723)
...+.++|++|++ .+.|.+||.+.+......+......+.++++.++++.+||.+-..+ +.+|++|||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~----~~yPheLSGG~ 159 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR----DRYPHQLSGGM 159 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh----ccCCcccCchH
Confidence 1235799999995 6788899999998777666543333467788999999999877655 45899999999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004932 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
||||.||+||+.+|++||+||||++||+.++.+|+++|+++. +.|.++|+++|++ ..+.++||||+||++|++|+.|+
T Consensus 160 rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE~G~ 238 (539)
T COG1123 160 RQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADRVVVMYKGEIVETGP 238 (539)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEEEecC
Confidence 999999999999999999999999999999999999999998 5689999988877 68999999999999999999999
Q ss_pred hhHHHHHh
Q 004932 332 TLACLQHF 339 (723)
Q Consensus 332 ~~~~~~~f 339 (723)
++++++.+
T Consensus 239 ~~~i~~~p 246 (539)
T COG1123 239 TEEILSNP 246 (539)
T ss_pred HHHHHhcc
Confidence 99998643
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=351.97 Aligned_cols=216 Identities=23% Similarity=0.339 Sum_probs=184.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 ~i~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~ 73 (242)
T TIGR03411 2 ILYLEGLSVSFD-----GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDE---GSVLFGGTDLTGLPEHQ 73 (242)
T ss_pred eEEEEeeEEEcC-----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEECCeecCCCCHHH
Confidence 378999999884 3469999999999999999999999999999999999998875 999999986532
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-------CccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHH
Q 004932 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLP-------GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (723)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGG 251 (723)
..+.++|++|++.+++.+||+||+.+....... ......+++++++++.+|+.+..++.+ +.||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G 147 (242)
T TIGR03411 74 IARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA------GLLSHG 147 (242)
T ss_pred HHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh------hhCCHH
Confidence 123599999999999999999999875432100 001123457889999999988777654 499999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004932 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 252 erqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|+
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~~~~~~~ 225 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDM-EFVRSIADKVTVLHQGSVLAEGS 225 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCH-HHHHHhCCEEEEEECCeEEeeCC
Confidence 99999999999999999999999999999999999999999976 68999988887 47889999999999999999998
Q ss_pred hhHHH
Q 004932 332 TLACL 336 (723)
Q Consensus 332 ~~~~~ 336 (723)
++++.
T Consensus 226 ~~~~~ 230 (242)
T TIGR03411 226 LDQVQ 230 (242)
T ss_pred HHHHh
Confidence 87653
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=351.32 Aligned_cols=223 Identities=21% Similarity=0.259 Sum_probs=181.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~--~~~~~~G~I~i~G~~~~~-- 179 (723)
+.++++||++.|. ++.+|+|+|+.+++||+++|+||||||||||+|+|+|+.+ +....+|+|.++|++...
T Consensus 5 ~~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 5 PKMEARGLSFFYG-----DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred cEEEEeeeEEEEC-----CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 3689999999984 3469999999999999999999999999999999999864 100125999999987531
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHH
Q 004932 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (723)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (723)
.++.++|++|++.+++ .||+||+.+....+........+++++++++.+++.+...... +..++.|||||||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LSgGq~q 156 (253)
T PRK14242 80 VDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRL--HESALGLSGGQQQ 156 (253)
T ss_pred cCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHh--hCCcccCCHHHHH
Confidence 1246999999998887 5999999886543211111123456888999999965322222 2355699999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|++++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNM-QQAARVSDVTAFFYMGKLIEVGPTEQ 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999964 78999988987 47889999999999999999998876
Q ss_pred HH
Q 004932 335 CL 336 (723)
Q Consensus 335 ~~ 336 (723)
+.
T Consensus 235 ~~ 236 (253)
T PRK14242 235 IF 236 (253)
T ss_pred HH
Confidence 53
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=357.24 Aligned_cols=221 Identities=22% Similarity=0.269 Sum_probs=183.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++||++.|.+.+...+++|+|+|+.+++||+++|+||||||||||+++|+|+++|++ |+|.++|++...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ---GSVRVDDTLITSTSKNK 78 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEcccccccc
Confidence 478999999985321112469999999999999999999999999999999999998874 999999987532
Q ss_pred ----CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCCHHH
Q 004932 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (723)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGe 252 (723)
.++.++|++|++ .+++ .||+||+.+...... ....+..++++++++.+||. +..++.+ .+|||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgG~ 150 (280)
T PRK13649 79 DIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFG-VSQEEAEALAREKLALVGISESLFEKNP------FELSGGQ 150 (280)
T ss_pred CHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCChhhhhCCc------ccCCHHH
Confidence 124689999996 4554 699999987643221 11112345678899999997 4556544 4999999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004932 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|++
T Consensus 151 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~ 229 (280)
T PRK13649 151 MRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM-DDVANYADFVYVLEKGKLVLSGKP 229 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999987789999999987 478889999999999999999998
Q ss_pred hHHHH
Q 004932 333 LACLQ 337 (723)
Q Consensus 333 ~~~~~ 337 (723)
+++.+
T Consensus 230 ~~~~~ 234 (280)
T PRK13649 230 KDIFQ 234 (280)
T ss_pred HHHhc
Confidence 88743
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=346.44 Aligned_cols=207 Identities=24% Similarity=0.321 Sum_probs=177.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (723)
++++|+++.+.+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|+++..
T Consensus 2 l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~i~~~~~~~~ 74 (222)
T PRK10908 2 IRFEHVSKAYLG----GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSA---GKIWFSGHDITRLKNREV 74 (222)
T ss_pred EEEEeeEEEecC----CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEcccCChhHH
Confidence 678999999831 2469999999999999999999999999999999999998875 999999986532
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004932 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
.++.++|++|++.+++.+|++||+.+...... ....+..++++++++.+++.+..++.+ +.||||||||++
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~ 147 (222)
T PRK10908 75 PFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAG-ASGDDIRRRVSAALDKVGLLDKAKNFP------IQLSGGEQQRVG 147 (222)
T ss_pred HHHHhheEEEecCccccccccHHHHHHhHHHhcC-CCHHHHHHHHHHHHHHcCChhhhhCCc------hhCCHHHHHHHH
Confidence 12468999999988889999999988654321 111123456788999999988777644 599999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (723)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++ .++..+||++++|++|+++
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 148 IARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI-GLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEc
Confidence 99999999999999999999999999999999999987789999988887 4788899999999999985
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=345.42 Aligned_cols=209 Identities=24% Similarity=0.340 Sum_probs=182.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-CceE
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YGSY 184 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~-~~~~ 184 (723)
++++|+++.+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|+++|.. |+|.++|++.... .+.+
T Consensus 1 l~l~~v~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~~~~~~~~~~~~~ 72 (223)
T TIGR03740 1 LETKNLSKRFG-----KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTS---GEIIFDGHPWTRKDLHKI 72 (223)
T ss_pred CEEEeEEEEEC-----CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEeccccccccE
Confidence 36899999884 3469999999999999999999999999999999999998875 9999999865322 2469
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 004932 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (723)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~ 264 (723)
+|++|++.+++.+|++||+.+...... ..++++.++++.+||.+..++.++ .||||||||++|||||+.
T Consensus 73 ~~~~q~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~~rv~laral~~ 141 (223)
T TIGR03740 73 GSLIESPPLYENLTARENLKVHTTLLG-----LPDSRIDEVLNIVDLTNTGKKKAK------QFSLGMKQRLGIAIALLN 141 (223)
T ss_pred EEEcCCCCccccCCHHHHHHHHHHHcC-----CCHHHHHHHHHHcCCcHHHhhhHh------hCCHHHHHHHHHHHHHhc
Confidence 999999999999999999987654321 123467889999999988877554 999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 265 ~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++. ++.++||++++|++|++++.|++.+
T Consensus 142 ~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 142 HPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999999878999999999984 7889999999999999999998653
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=348.29 Aligned_cols=207 Identities=29% Similarity=0.425 Sum_probs=172.9
Q ss_pred EEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEE
Q 004932 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFV 187 (723)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv 187 (723)
++||++.|. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|++....++.++|+
T Consensus 2 ~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~i~~v 73 (213)
T cd03235 2 VEDLTVSYG-----GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTS---GSIRVFGKPLEKERKRIGYV 73 (213)
T ss_pred cccceeEEC-----CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---CEEEECCccHHHHHhheEEe
Confidence 578888884 2469999999999999999999999999999999999998875 99999997643223569999
Q ss_pred cCCCccC--CCCCHHHHHHHHHHhcCC---CccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004932 188 ERETTLI--GSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 188 ~Q~~~l~--~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
+|++.+. ..+||+||+.+....... ......+++++++++.+++.+..++.+ ..|||||||||+|||||
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrv~la~al 147 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI------GELSGGQQQRVLLARAL 147 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc------ccCCHHHHHHHHHHHHH
Confidence 9998763 348999999875422110 011123457889999999988777654 49999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++| +++.|
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999999999987889999999987 4788999999999876 66554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=357.41 Aligned_cols=228 Identities=23% Similarity=0.327 Sum_probs=189.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++|+++.|.+ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~---G~i~i~g~~~~~~~~~~ 77 (283)
T PRK13636 5 ILKVEELNYNYSD----GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS---GRILFDGKPIDYSRKGL 77 (283)
T ss_pred eEEEEeEEEEeCC----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---cEEEECCEECCCCcchH
Confidence 5899999999941 3469999999999999999999999999999999999998875 999999987531
Q ss_pred --CCceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH
Q 004932 180 --PYGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (723)
Q Consensus 180 --~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (723)
.++.++|++|++. .+...||+||+.+...... .......++++++++.+||.+..++.+ +.||||||||+
T Consensus 78 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LS~G~~qrl 150 (283)
T PRK13636 78 MKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLK-LPEDEVRKRVDNALKRTGIEHLKDKPT------HCLSFGQKKRV 150 (283)
T ss_pred HHHHhhEEEEecCcchhhccccHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHCCChhhhhCCc------ccCCHHHHHHH
Confidence 1246999999963 3345799999987643221 111123467899999999998877754 59999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 257 ~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.++|||+++|++|++++.|+++++
T Consensus 151 ~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~ 229 (283)
T PRK13636 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKEV 229 (283)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999865 89999998887 467889999999999999999999887
Q ss_pred HH---HhhhcCCCCC
Q 004932 336 LQ---HFSNAGFPCP 347 (723)
Q Consensus 336 ~~---~f~~~g~~~~ 347 (723)
.. .+...+.++|
T Consensus 230 ~~~~~~~~~~~~~~~ 244 (283)
T PRK13636 230 FAEKEMLRKVNLRLP 244 (283)
T ss_pred hcCHHHHHHcCCCCC
Confidence 64 2333455443
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=352.86 Aligned_cols=216 Identities=26% Similarity=0.342 Sum_probs=184.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++|+++.|. ++.+|+|+|+.+++||+++|+||||||||||+++|+|+++|.. |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~---G~i~~~g~~~~~~~~~~ 73 (258)
T PRK13548 2 MLEARNLSVRLG-----GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDS---GEVRLNGRPLADWSPAE 73 (258)
T ss_pred eEEEEeEEEEeC-----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCEEcccCCHHH
Confidence 478999999984 3469999999999999999999999999999999999998875 999999986432
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (723)
..+.++|++|++.+++.+||+||+.+...... ......+++++++++.+||.+..++.+ ..|||||||||+||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGe~qrv~la 146 (258)
T PRK13548 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHG-LSRAEDDALVAAALAQVDLAHLAGRDY------PQLSGGEQQRVQLA 146 (258)
T ss_pred hhhheEEEccCCcCCCCCCHHHHHHhhhcccC-CCcHHHHHHHHHHHHHcCCHhHhcCCc------ccCCHHHHHHHHHH
Confidence 12468999999988888999999987542211 111123456889999999988777754 49999999999999
Q ss_pred HHHh------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004932 260 RELV------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 260 ~aL~------~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
|||+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||+++|++ .++.++||++++|++|++++.|++
T Consensus 147 ~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~ 225 (258)
T PRK13548 147 RVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRIVLLHQGRLVADGTP 225 (258)
T ss_pred HHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEEEEEECCEEEeeCCH
Confidence 9999 5999999999999999999999999999998 6789999998887 478889999999999999999998
Q ss_pred hHHH
Q 004932 333 LACL 336 (723)
Q Consensus 333 ~~~~ 336 (723)
+++.
T Consensus 226 ~~~~ 229 (258)
T PRK13548 226 AEVL 229 (258)
T ss_pred HHHh
Confidence 7764
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=364.32 Aligned_cols=228 Identities=20% Similarity=0.208 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeCCC-C--
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-ARMYGEVFVNGAKSEM-P-- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~-~~~~G~I~i~G~~~~~-~-- 180 (723)
.++++||++.|..++ +...+|+|||+++++||+++|+|+||||||||+++|+|++++. ...+|+|.++|+++.. .
T Consensus 3 ~L~v~~l~~~y~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTSD-GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCCC-CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 478999999995321 2356999999999999999999999999999999999998642 1235999999987532 1
Q ss_pred ------CceEEEEcCCCc--cCCCCCHHHHHHHHHHhc-CCC----ccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCC
Q 004932 181 ------YGSYGFVERETT--LIGSLTVREYLYYSALLQ-LPG----FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247 (723)
Q Consensus 181 ------~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~-~~~----~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~ 247 (723)
.+.++||+|++. ++|.+||.+++.+..... ... ...+.++++.++++.+||.+..+.. +.++++
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~---~~~p~~ 158 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAM---RSFPYE 158 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHH---hCCchh
Confidence 236999999975 688999999997643211 100 1112346788999999997543221 336679
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004932 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 248 LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
|||||||||+|||||+.+|++|||||||+|||+.++.+++++|++++++ |.|+|+++|+. ..+.++||+|++|++|++
T Consensus 159 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl-~~v~~~~dri~vm~~G~i 237 (330)
T PRK15093 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL-QMLSQWADKINVLYCGQT 237 (330)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999874 89999988886 578899999999999999
Q ss_pred EEEeChhHHHH
Q 004932 327 LFFGETLACLQ 337 (723)
Q Consensus 327 v~~G~~~~~~~ 337 (723)
++.|+++++.+
T Consensus 238 ve~g~~~~i~~ 248 (330)
T PRK15093 238 VETAPSKELVT 248 (330)
T ss_pred EEECCHHHHHh
Confidence 99999988753
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=349.88 Aligned_cols=217 Identities=20% Similarity=0.284 Sum_probs=180.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC----
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~--~~~~~~~G~I~i~G~~~~~---- 179 (723)
++++||++.|. ++.+|+|+|+.+++||+++|+||||||||||+|+|+|+. +|+ +|+|.++|++...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 1 LKIKDLHVSVE-----DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPD 72 (243)
T ss_pred CeEeeEEEEEC-----CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHH
Confidence 36899999984 346999999999999999999999999999999999995 565 4999999987532
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC--C----ccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCCH
Q 004932 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLP--G----FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPC 250 (723)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~--~----~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSG 250 (723)
....++|++|++.+++.+|++|++.+....... . ...+..++++++++.++|. +..++.++ .+|||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~LS~ 147 (243)
T TIGR01978 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN-----EGFSG 147 (243)
T ss_pred HhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc-----cCcCH
Confidence 123489999999999999999999876432111 0 0111245688999999997 45555332 25999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhc-CCEEEEEeCCeEEEE
Q 004932 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLFF 329 (723)
Q Consensus 251 GerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv~~ 329 (723)
||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+... ||++++|++|++++.
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~G~i~~~ 226 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLDGRIVKS 226 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999999999888899999999984 67777 899999999999999
Q ss_pred eChhHHH
Q 004932 330 GETLACL 336 (723)
Q Consensus 330 G~~~~~~ 336 (723)
|+++++.
T Consensus 227 g~~~~~~ 233 (243)
T TIGR01978 227 GDVELAK 233 (243)
T ss_pred cCHHHhc
Confidence 9987543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=346.80 Aligned_cols=215 Identities=37% Similarity=0.591 Sum_probs=181.8
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC---CCCCceeEEEECCEeCCC--C
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP---HSARMYGEVFVNGAKSEM--P 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~---~~~~~~G~I~i~G~~~~~--~ 180 (723)
+.++|+++.+++.+ ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++ |+ +|+|.++|++... .
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~ 79 (226)
T cd03234 4 LPWWDVGLKAKNWN-KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQF 79 (226)
T ss_pred ceeecceeeeecCc-cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHh
Confidence 67999999985321 13679999999999999999999999999999999999998 65 4999999987532 2
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccc--hHHHHHHH-HHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004932 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC--QRKNVVED-AIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~--~~~~~v~~-~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
++.++|++|++.+++.+||+||+.+......+.... ....++++ .++.+++.+..++.+ +.|||||||||+
T Consensus 80 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~ 153 (226)
T cd03234 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV------KGISGGERRRVS 153 (226)
T ss_pred cccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc------cCcCHHHHHHHH
Confidence 356999999999999999999998875443221111 12234555 889999987776644 599999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++..++.++||++++|++|++++.|
T Consensus 154 laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 154 IAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999998779999999999855789999999999999999865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=371.39 Aligned_cols=203 Identities=27% Similarity=0.361 Sum_probs=177.8
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------CceEEEEcCCCccC
Q 004932 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---------YGSYGFVERETTLI 194 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---------~~~~~yv~Q~~~l~ 194 (723)
.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+++... ++.++|++|+..++
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s---G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR---GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC---CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 48999999999999999999999999999999999999875 9999999875321 24699999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 004932 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274 (723)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEP 274 (723)
+.+||+||+.+....... ...+.+++++++++.+||.+..++.+ ++|||||||||+|||||+.+|++||||||
T Consensus 119 ~~~Tv~enl~~~~~~~~~-~~~~~~~~~~e~L~~~gL~~~~~~~~------~~LSgGq~QRv~LArAL~~~P~iLLLDEP 191 (400)
T PRK10070 119 PHMTVLDNTAFGMELAGI-NAEERREKALDALRQVGLENYAHSYP------DELSGGMRQRVGLARALAINPDILLMDEA 191 (400)
T ss_pred CCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCChhhhcCc------ccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999999999987654311 11224567889999999998877744 59999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 275 LYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 275 TsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|+|||+.++..+.+.|+++++ .|+|||+++|++ +++.++||++++|++|+++..|+++++..
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~Dri~vL~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 192 FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIAIMQNGEVVQVGTPDEILN 254 (400)
T ss_pred CccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhCCEEEEEECCEEEecCCHHHHHh
Confidence 999999999999999999975 589999988887 57889999999999999999999887643
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=352.22 Aligned_cols=222 Identities=25% Similarity=0.318 Sum_probs=193.7
Q ss_pred eEEEEeEEEEEeccc-------------------ccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCC
Q 004932 105 SVVWKDLTVTIKGKR-------------------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR 165 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~-------------------~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~ 165 (723)
.++++|+.+-+.... .+-..-++|+|+.++.||+..|||-||||||||+++|+++.+|+.
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~- 82 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR- 82 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC-
Confidence 578999988875320 112235899999999999999999999999999999999999986
Q ss_pred ceeEEEECCEeCC---------CCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhh
Q 004932 166 MYGEVFVNGAKSE---------MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYAN 236 (723)
Q Consensus 166 ~~G~I~i~G~~~~---------~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 236 (723)
|+|+++|+++. ..++.+++|+|...|+|+.||.||..|+..++-- ...++++++.++|+.+||+.+.+
T Consensus 83 --G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv-~~~er~~~a~~~l~~VgL~~~~~ 159 (386)
T COG4175 83 --GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGV-PKAEREERALEALELVGLEGYAD 159 (386)
T ss_pred --ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCC-CHHHHHHHHHHHHHHcCchhhhh
Confidence 99999998742 1245799999999999999999999998766521 12247788999999999999998
Q ss_pred hhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcC
Q 004932 237 KLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLF 315 (723)
Q Consensus 237 ~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~ 315 (723)
+ +|++|||||||||.|||||+.+|+||++|||+|+|||--+.++.+.|.+|.+ -++|||+++|+. +|++++.
T Consensus 160 ~------yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDL-dEAlriG 232 (386)
T COG4175 160 K------YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDL-DEALRIG 232 (386)
T ss_pred c------CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHHhcc
Confidence 8 5569999999999999999999999999999999999999999999999985 589999987775 6899999
Q ss_pred CEEEEEeCCeEEEEeChhHHHH
Q 004932 316 DRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 316 D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|||.+|++|+||..|+|+|++.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHc
Confidence 9999999999999999999864
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=351.38 Aligned_cols=222 Identities=20% Similarity=0.258 Sum_probs=181.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~--~~~G~I~i~G~~~~~--- 179 (723)
.++++|+++.|. ++.+|+|+|+.+++||+++|+|+||||||||+|+|+|+++|.. ..+|+|.++|+++..
T Consensus 7 ~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (254)
T PRK14273 7 IIETENLNLFYT-----DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF 81 (254)
T ss_pred eEEEeeeEEEeC-----CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccc
Confidence 589999999984 3469999999999999999999999999999999999988631 125999999987421
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004932 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
.++.++|++|++.+++ +||+||+.+.............+++++++++.+++.+...... +..+++||||||||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LSgG~~qr 158 (254)
T PRK14273 82 DILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKL--NTNALSLSGGQQQR 158 (254)
T ss_pred cHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHH--hCCcccCCHHHHHH
Confidence 1346999999988875 8999999886533211111123456888899998843211111 23456999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
|+|||+|+.+|++|||||||+|||+.++..+++.|+++++ +.|||+++|++ .++.++|||+++|++|+++..|+++++
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 159 LCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNM-QQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999964 78999988887 478899999999999999999998876
Q ss_pred H
Q 004932 336 L 336 (723)
Q Consensus 336 ~ 336 (723)
.
T Consensus 237 ~ 237 (254)
T PRK14273 237 F 237 (254)
T ss_pred H
Confidence 4
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=403.63 Aligned_cols=221 Identities=25% Similarity=0.309 Sum_probs=193.8
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (723)
..++++||++.|.+ +++.+|+|+|+.+++||+++|+||||||||||+|+|+|+.+|++ |+|.++|+++..
T Consensus 927 ~~L~I~nLsK~y~~---~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pts---G~I~i~G~dI~~~~~~ 1000 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP---SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTS---GTVLVGGKDIETNLDA 1000 (2272)
T ss_pred ceEEEEeEEEEecC---CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCc---eEEEECCEECcchHHH
Confidence 36899999999942 23579999999999999999999999999999999999999875 999999987642
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (723)
.++.+||++|++.+++.+||+|++.+.++++.. ...+.+++++++++.+||.+.+++.++ +|||||||||+||
T Consensus 1001 ~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~-~~~~~~~~v~~lL~~vgL~~~~~~~~~------~LSGGqKQRLsLA 1073 (2272)
T TIGR01257 1001 VRQSLGMCPQHNILFHHLTVAEHILFYAQLKGR-SWEEAQLEMEAMLEDTGLHHKRNEEAQ------DLSGGMQRKLSVA 1073 (2272)
T ss_pred HhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchhhcCChh------hCCHHHHHHHHHH
Confidence 135699999999999999999999987765421 112245678999999999988877554 9999999999999
Q ss_pred HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHh
Q 004932 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (723)
Q Consensus 260 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (723)
+||+.+|+||||||||+|||+.++..+.++|++++ +|+|||+++|++ +++..+||||++|++|+++..|++.++.+.|
T Consensus 1074 rALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1074 IAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 99999999999999999999999999999999995 599999999887 5888999999999999999999999887655
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=351.85 Aligned_cols=218 Identities=20% Similarity=0.302 Sum_probs=181.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM-- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~--~~~G~I~i~G~~~~~-- 179 (723)
..++++|+++.|. ++.+|+|+|+++++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|+++..
T Consensus 11 ~~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 85 (258)
T PRK14268 11 PQIKVENLNLWYG-----EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD 85 (258)
T ss_pred eeEEEeeeEEEeC-----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccccc
Confidence 3689999999884 3469999999999999999999999999999999999987510 125999999987531
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc----hHhhhhhcCCCCCCCCCH
Q 004932 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPC 250 (723)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~~LSG 250 (723)
..+.++|++|++.+++ +|++||+.+..... .......+++++++++.+++. +..++ .+..|||
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~LSg 157 (258)
T PRK14268 86 VDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH-GANKKDLDGVVENALRSAALWDETSDRLKS------PALSLSG 157 (258)
T ss_pred chHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCCcchhhhhcC------ChhhCCH
Confidence 1246999999998887 89999998865332 111112345688899999984 33343 4569999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 251 GerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|++ .++.++||++++|++|++++.|
T Consensus 158 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~ 235 (258)
T PRK14268 158 GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNM-QQAARISDYTGFFLMGELIEFG 235 (258)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999965 78999988987 4788899999999999999999
Q ss_pred ChhHHH
Q 004932 331 ETLACL 336 (723)
Q Consensus 331 ~~~~~~ 336 (723)
+++++.
T Consensus 236 ~~~~~~ 241 (258)
T PRK14268 236 QTRQIF 241 (258)
T ss_pred CHHHHh
Confidence 988764
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=354.51 Aligned_cols=223 Identities=22% Similarity=0.278 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEeccc----ccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 004932 105 SVVWKDLTVTIKGKR----RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~- 179 (723)
.++++||++.|.... ..++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQ---GTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEcccc
Confidence 378999999985210 113579999999999999999999999999999999999999875 999999987532
Q ss_pred -------CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCC
Q 004932 180 -------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLP 249 (723)
Q Consensus 180 -------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LS 249 (723)
.++.++|++|++ .+++.+||+||+.+.............++++.++++.+||. +..++.+ .+||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~------~~LS 152 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLP------RQLS 152 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCCh------hhCC
Confidence 124699999996 46778999999976543211111112346788999999996 5666644 4999
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 004932 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (723)
Q Consensus 250 GGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (723)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ ..+.++||++++|++|++++
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999865 89999998887 47888999999999999999
Q ss_pred EeChhHHHH
Q 004932 329 FGETLACLQ 337 (723)
Q Consensus 329 ~G~~~~~~~ 337 (723)
.|+++++..
T Consensus 232 ~g~~~~~~~ 240 (265)
T TIGR02769 232 ECDVAQLLS 240 (265)
T ss_pred ECCHHHHcC
Confidence 999887643
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=353.39 Aligned_cols=219 Identities=26% Similarity=0.407 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++||++.+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|+++|+...+|+|.++|++....
T Consensus 4 ~l~~~nl~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~ 78 (262)
T PRK09984 4 IIRVEKLAKTFN-----QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA 78 (262)
T ss_pred EEEEeeEEEEeC-----CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccc
Confidence 589999999984 35799999999999999999999999999999999999987532359999999865210
Q ss_pred ------CceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-------CccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCC
Q 004932 181 ------YGSYGFVERETTLIGSLTVREYLYYSALLQLP-------GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247 (723)
Q Consensus 181 ------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~ 247 (723)
.+.++|++|++.+++.+||.||+.+......+ ....+.+++++++++.+||.+..++.+ .+
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~ 152 (262)
T PRK09984 79 RDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV------ST 152 (262)
T ss_pred hhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc------cc
Confidence 23589999999999999999999875321100 001123457899999999988777754 49
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004932 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 248 LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++|++
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~i~~l~~g~i 231 (262)
T PRK09984 153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCERIVALRQGHV 231 (262)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999986 489999999987 468899999999999999
Q ss_pred EEEeChhHH
Q 004932 327 LFFGETLAC 335 (723)
Q Consensus 327 v~~G~~~~~ 335 (723)
++.|++++.
T Consensus 232 ~~~g~~~~~ 240 (262)
T PRK09984 232 FYDGSSQQF 240 (262)
T ss_pred EEeCCHHHh
Confidence 999988763
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=355.63 Aligned_cols=218 Identities=22% Similarity=0.267 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++||++.|.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|++....
T Consensus 5 ~l~~~~l~~~~~~---~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~---G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 5 IIRVEHISFRYPD---AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEA---GTITVGGMVLSEETVWD 78 (279)
T ss_pred eEEEEEEEEEeCC---CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEECCEECCcCcHHH
Confidence 5899999999842 13469999999999999999999999999999999999999875 9999999875321
Q ss_pred -CceEEEEcCCC-ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 181 -YGSYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 181 -~~~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
.+.++|++|++ .+++..||.||+.+...... ....+.+++++++++.+||.+..++.+ ..|||||||||+|
T Consensus 79 ~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LS~G~~qrv~l 151 (279)
T PRK13635 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENIG-VPREEMVERVDQALRQVGMEDFLNREP------HRLSGGQKQRVAI 151 (279)
T ss_pred HhhheEEEEeCHHHhcccccHHHHHhhhHhhCC-CCHHHHHHHHHHHHHHcCChhhhhCCc------ccCCHHHHHHHHH
Confidence 24699999997 36667899999987654321 111223467899999999998887755 4999999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|++. ++. .||++++|++|++++.|+++++..
T Consensus 152 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 152 AGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999999875 899999999975 555 599999999999999999888753
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=354.05 Aligned_cols=217 Identities=26% Similarity=0.362 Sum_probs=184.1
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (723)
+.++||++.|.+ .+.+|+|+|+++++||+++|+||||||||||+++|+|++++.. |+|.++|++...
T Consensus 2 l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (275)
T PRK13639 2 LETRDLKYSYPD----GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTS---GEVLIKGEPIKYDKKSLL 74 (275)
T ss_pred EEEEEEEEEeCC----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCEECccccchHH
Confidence 679999999842 2469999999999999999999999999999999999998875 999999987531
Q ss_pred -CCceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004932 180 -PYGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 180 -~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
..+.++|++|++. .+...||.||+.+..... .....+..+++.++++.++|.+..++.+ ++||||||||++
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~------~~LS~Gq~qrv~ 147 (275)
T PRK13639 75 EVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL-GLSKEEVEKRVKEALKAVGMEGFENKPP------HHLSGGQKKRVA 147 (275)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCchhhcCCh------hhCCHHHHHHHH
Confidence 1246899999963 333579999998764321 1111123456889999999998887755 499999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|++++.|+++++.+
T Consensus 148 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 148 IAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999987799999998887 47888999999999999999999998753
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=332.09 Aligned_cols=217 Identities=26% Similarity=0.353 Sum_probs=186.8
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (723)
++.+||++.+. ++++|++||++++|||++||+||||||||||||.|+|.+.|++ |++.+||.+....
T Consensus 2 i~a~nls~~~~-----Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~---G~v~~~g~~l~~~~~~~l 73 (259)
T COG4559 2 IRAENLSYSLA-----GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDS---GEVTLNGVPLNSWPPEEL 73 (259)
T ss_pred eeeeeeEEEee-----cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCC---CeEeeCCcChhhCCHHHH
Confidence 67899999985 4689999999999999999999999999999999999999875 9999999875432
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcC-CCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHH
Q 004932 181 YGSYGFVERETTLIGSLTVREYLYYSALLQL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (723)
.+.-+.++|+..+-...||.|.+.++..-.. +....+..+.++++|...++.+++.+.. ..|||||||||.+|
T Consensus 74 A~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y------~~LSGGEqQRVqlA 147 (259)
T COG4559 74 ARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY------RTLSGGEQQRVQLA 147 (259)
T ss_pred HHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccch------hhcCchHHHHHHHH
Confidence 2346889999988778899999988753221 1111234455889999999999998855 38999999999999
Q ss_pred HHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 260 RELVM------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 260 ~aL~~------~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
|.|++ ++++||||||||+||...+..++++.++++++|..|+++.|+. .....+||||++|++||++..|+++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDL-NLAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDL-NLAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccc-hHHHHhhheeeeeeCCeEeecCCHH
Confidence 99987 4569999999999999999999999999999999999988887 4788999999999999999999999
Q ss_pred HHHH
Q 004932 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++++
T Consensus 227 ~vlt 230 (259)
T COG4559 227 DVLT 230 (259)
T ss_pred HhcC
Confidence 9873
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=356.00 Aligned_cols=215 Identities=20% Similarity=0.286 Sum_probs=182.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (723)
++++||++.|. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+++..
T Consensus 2 l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~~ 73 (271)
T PRK13638 2 LATSDLWFRYQ-----DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQK---GAVLWQGKPLDYSKRGLL 73 (271)
T ss_pred eEEEEEEEEcC-----CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCc---cEEEECCEEcccccCCHH
Confidence 67899999984 3469999999999999999999999999999999999999875 999999987531
Q ss_pred -CCceEEEEcCCCcc-CCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004932 180 -PYGSYGFVERETTL-IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 180 -~~~~~~yv~Q~~~l-~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
.++.++|++|++.. +...|+.||+.+..... .....+..++++++++.+||.+..++.+ ..||||||||++
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrl~ 146 (271)
T PRK13638 74 ALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL-GVPEAEITRRVDEALTLVDAQHFRHQPI------QCLSHGQKKRVA 146 (271)
T ss_pred HHHhheEEEeeChhhccccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHhHhcCCc------hhCCHHHHHHHH
Confidence 12468999999752 34568999998764322 1111123456788999999988877644 499999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 147 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 147 IAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDI-DLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999987789999988887 4788899999999999999999988764
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=346.90 Aligned_cols=211 Identities=20% Similarity=0.320 Sum_probs=180.1
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (723)
++++||++.|+ ++++|+|+|+++++||+++|+||||||||||+++|+|+++|.+ |+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (230)
T TIGR03410 1 LEVSNLNVYYG-----QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKS---GSIRLDGEDITKLPPHER 72 (230)
T ss_pred CEEEeEEEEeC-----CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCEECCCCCHHHH
Confidence 46899999884 3479999999999999999999999999999999999999875 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcC-CchHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS-LSDYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
..+.++|++|++.+++.+|+.||+.+....... ...+.++++++.++ +.+..++. ++.||||||||++|
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~----~~~~~~~~~l~~~~~l~~~~~~~------~~~LS~G~~qrv~l 142 (230)
T TIGR03410 73 ARAGIAYVPQGREIFPRLTVEENLLTGLAALPR----RSRKIPDEIYELFPVLKEMLGRR------GGDLSGGQQQQLAI 142 (230)
T ss_pred HHhCeEEeccCCcccCCCcHHHHHHHHHHhcCc----chHHHHHHHHHHHHhHHHHhhCC------hhhCCHHHHHHHHH
Confidence 124699999999999999999999876533211 12334577788776 55556654 45999999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++.++||++++|++|++++.|+.+++
T Consensus 143 a~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 143 ARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999999999999874 89999998887 478889999999999999999998775
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=350.64 Aligned_cols=223 Identities=26% Similarity=0.303 Sum_probs=183.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCC---C
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSE---M 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~--~~~~G~I~i~G~~~~---~ 179 (723)
.++++||++.|. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ ...+|+|.++|+++. .
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (253)
T PRK14267 4 AIETVNLRVYYG-----SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78 (253)
T ss_pred eEEEEeEEEEeC-----CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 578999999984 346999999999999999999999999999999999998873 012599999998753 1
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcC-CCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHH
Q 004932 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (723)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (723)
.++.++|++|++.+++.+||.||+.+....+. ........++++++++.+++.+...... +..+..|||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~q 156 (253)
T PRK14267 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRL--NDYPSNLSGGQRQ 156 (253)
T ss_pred ChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhh--ccChhhCCHHHHH
Confidence 12469999999999999999999987654321 1111123456788999999853211111 2355699999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|++++
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999975 68999998987 47889999999999999999999887
Q ss_pred HH
Q 004932 335 CL 336 (723)
Q Consensus 335 ~~ 336 (723)
+.
T Consensus 235 ~~ 236 (253)
T PRK14267 235 VF 236 (253)
T ss_pred HH
Confidence 64
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=343.96 Aligned_cols=209 Identities=24% Similarity=0.332 Sum_probs=176.0
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C----
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P---- 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~-~---- 180 (723)
++++|+++.|.++. ..+++|+|+|+.+++||+++|+||||||||||+++|+|+++|.. |+|.++|++... .
T Consensus 2 l~~~~v~~~~~~~~-~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 2 LKCENLGKRYQEGK-LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTS---GEVLFNGQSLSKLSSNER 77 (221)
T ss_pred EEEEeeeEEccCCC-cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEhhhcCHhHH
Confidence 67899999985311 12469999999999999999999999999999999999998875 999999987532 1
Q ss_pred ----CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH
Q 004932 181 ----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (723)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (723)
.+.++|++|++.+++.+||+||+.+....+.. ...+..+++.++++.+||.+..++.+ +.|||||||||
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv 150 (221)
T TIGR02211 78 AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKK-SVKEAKERAYEMLEKVGLEHRINHRP------SELSGGERQRV 150 (221)
T ss_pred HHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCChhhhhCCh------hhCCHHHHHHH
Confidence 14699999999999999999999876543211 11123456789999999988777754 49999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 004932 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (723)
Q Consensus 257 ~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (723)
+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++. .+. .+|++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~-~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LAK-KLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHh-hcCEEEEEeCCEec
Confidence 999999999999999999999999999999999999986 4899999999874 554 58999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=354.84 Aligned_cols=215 Identities=25% Similarity=0.294 Sum_probs=183.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (723)
++++||++.|++ ++.+|+|||+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 2 l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 74 (274)
T PRK13644 2 IRLENVSYSYPD----GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQK---GKVLVSGIDTGDFSKLQG 74 (274)
T ss_pred EEEEEEEEEcCC----CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEECCccccHHH
Confidence 678999999842 3469999999999999999999999999999999999998875 9999999875321
Q ss_pred -CceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 181 -YGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
.+.++|++|++. .+...|+.||+.+...... ....+..++++++++.+||.+..++.+ +.|||||||||+|
T Consensus 75 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G~~qrv~l 147 (274)
T PRK13644 75 IRKLVGIVFQNPETQFVGRTVEEDLAFGPENLC-LPPIEIRKRVDRALAEIGLEKYRHRSP------KTLSGGQGQCVAL 147 (274)
T ss_pred HHhheEEEEEChhhhcccchHHHHHHhhHHHcC-CCHHHHHHHHHHHHHHCCCHHHhcCCc------ccCCHHHHHHHHH
Confidence 246999999975 3566899999987653321 111123456889999999988877754 4999999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++. ++ ..||++++|++|++++.|+++++.
T Consensus 148 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 148 AGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999888999999999875 56 569999999999999999998865
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=348.68 Aligned_cols=223 Identities=25% Similarity=0.294 Sum_probs=183.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM--- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~--~~~~G~I~i~G~~~~~--- 179 (723)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. ...+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 77 (250)
T PRK14247 3 KIEIRDLKVSFG-----QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77 (250)
T ss_pred eEEEEeeEEEEC-----CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH
Confidence 478999999884 346999999999999999999999999999999999998741 0135999999987532
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-CccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH
Q 004932 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (723)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (723)
.++.++|++|++.+++.+||.||+.+....... ....+..+.++++++.+||.+...... +..+.+|||||||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LSgG~~qrv 155 (250)
T PRK14247 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRL--DAPAGKLSGGQQQRL 155 (250)
T ss_pred HHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhh--cCCcccCCHHHHHHH
Confidence 124699999999888999999999876533211 111123456889999999864321111 234569999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 257 ~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|+|+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 156 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 156 CIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999999965 78999988987 4788899999999999999999988764
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=351.37 Aligned_cols=217 Identities=22% Similarity=0.343 Sum_probs=185.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++|+++.|. ++.+|+|+|+++++||+++|+|+||||||||+++|+|+++|++ |+|.++|++...
T Consensus 2 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~ 73 (255)
T PRK11231 2 TLRTENLTVGYG-----TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQS---GTVFLGDKPISMLSSRQ 73 (255)
T ss_pred EEEEEeEEEEEC-----CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCC---cEEEECCEEhHHCCHHH
Confidence 478999999884 3579999999999999999999999999999999999998864 999999986421
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHh--c-CCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALL--Q-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~--~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (723)
..+.++|++|+..+++.+|+.||+.++... . .........++++++++.+||.+..++.+ ..|||||||||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv 147 (255)
T PRK11231 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL------TDLSGGQRQRA 147 (255)
T ss_pred HhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc------ccCCHHHHHHH
Confidence 124599999999888889999999875211 1 11111123456889999999988777654 59999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 257 ~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|+++..|++++..
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 148 FLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL-NQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 999999999999999999999999999999999999987899999999987 4788999999999999999999887653
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=343.14 Aligned_cols=204 Identities=27% Similarity=0.351 Sum_probs=172.0
Q ss_pred EEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----Cc
Q 004932 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----YG 182 (723)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~-----~~ 182 (723)
++|+++.|.+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|++.... ++
T Consensus 2 ~~~l~~~~~~---~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~~~ 75 (211)
T cd03225 2 LKNLSFSYPD---GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTS---GEVLVDGKDLTKLSLKELRR 75 (211)
T ss_pred ceeEEEecCC---CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEEcccCCHHHHHh
Confidence 6789988842 11569999999999999999999999999999999999998875 9999999875321 24
Q ss_pred eEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 183 SYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 183 ~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
.++|++|++. .++.+|++||+.+...... ......+++++++++.++|.+..++.+ ..|||||||||+||||
T Consensus 76 ~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrv~lara 148 (211)
T cd03225 76 KVGLVFQNPDDQFFGPTVEEEVAFGLENLG-LPEEEIEERVEEALELVGLEGLRDRSP------FTLSGGQKQRVAIAGV 148 (211)
T ss_pred hceEEecChhhhcCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCcHhhhcCCc------ccCCHHHHHHHHHHHH
Confidence 6899999974 3667899999987643221 111123456889999999987777654 4999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (723)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++..+||++++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999987799999999987 47888999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=355.34 Aligned_cols=218 Identities=26% Similarity=0.356 Sum_probs=185.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++|+++.|.+ .+.+|+|+|+++++||+++|+|+||||||||+|+|+|+++|++ |+|.++|++....
T Consensus 3 ~l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 75 (277)
T PRK13652 3 LIETRDLCYSYSG----SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTS---GSVLIRGEPITKENIRE 75 (277)
T ss_pred eEEEEEEEEEeCC----CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEECCcCCHHH
Confidence 4789999999842 2359999999999999999999999999999999999999875 9999999875321
Q ss_pred -CceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 181 -YGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
.+.++|++|++. .+...||.||+.+..... .......+++++++++.+||.+..++.+ +.||||||||++|
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~Gq~qrl~l 148 (277)
T PRK13652 76 VRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL-GLDEETVAHRVSSALHMLGLEELRDRVP------HHLSGGEKKRVAI 148 (277)
T ss_pred HHhheEEEecCcccccccccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChhHhcCCc------ccCCHHHHHHHHH
Confidence 246899999963 334679999998765322 1111123456889999999988877754 4999999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++ +++.++||++++|++|++++.|++++..+
T Consensus 149 araL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 149 AGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 99999999999999999999999999999999999875 89999999987 47889999999999999999999988754
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-41 Score=352.81 Aligned_cols=222 Identities=21% Similarity=0.298 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEeccc----ccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 004932 105 SVVWKDLTVTIKGKR----RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~- 179 (723)
.++++||++.|..+. ...+.+|+|+|+.+++||+++|+|||||||||||++|+|+++|++ |+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~ 80 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS---GELLIDDHPLHFG 80 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCC---CEEEECCEECCCC
Confidence 589999999995211 113469999999999999999999999999999999999999875 999999987532
Q ss_pred ----CCceEEEEcCCCc--cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCCHHH
Q 004932 180 ----PYGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (723)
Q Consensus 180 ----~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGe 252 (723)
..+.++|++|++. +++.+|+.|++.+...........+..++++++++.+||. +..++. +..|||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~LS~G~ 154 (267)
T PRK15112 81 DYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYY------PHMLAPGQ 154 (267)
T ss_pred chhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcC------chhcCHHH
Confidence 1246999999974 6778899999987654432111112345688999999994 566554 45999999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004932 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++ +++..+||++++|++|++++.|+
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999999864 89999998887 47888999999999999999998
Q ss_pred hhHHH
Q 004932 332 TLACL 336 (723)
Q Consensus 332 ~~~~~ 336 (723)
++++.
T Consensus 234 ~~~~~ 238 (267)
T PRK15112 234 TADVL 238 (267)
T ss_pred HHHHh
Confidence 87754
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=353.19 Aligned_cols=217 Identities=22% Similarity=0.327 Sum_probs=185.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++|+++.++ ++.+|+|+|+.+++||+++|+||||||||||+++|+|+.+|++ |+|.++|++...
T Consensus 11 ~l~i~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~ 82 (265)
T PRK10575 11 TFALRNVSFRVP-----GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSE---GEILLDAQPLESWSSKA 82 (265)
T ss_pred eEEEeeEEEEEC-----CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---CEEEECCEehhhCCHHH
Confidence 589999999984 3479999999999999999999999999999999999998875 999999986421
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC---CccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (723)
..+.++|++|+..+++.+|+.||+.+....... ......+++++++++.++|.+..++.+ .+|||||||||
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrv 156 (265)
T PRK10575 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV------DSLSGGERQRA 156 (265)
T ss_pred HhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc------ccCCHHHHHHH
Confidence 124699999998888899999999875321100 001123456889999999988777654 49999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 257 ~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |.|||+++|++ .++.++||++++|++|++++.|+++++
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHh
Confidence 9999999999999999999999999999999999999864 89999999987 478899999999999999999988765
Q ss_pred H
Q 004932 336 L 336 (723)
Q Consensus 336 ~ 336 (723)
.
T Consensus 236 ~ 236 (265)
T PRK10575 236 M 236 (265)
T ss_pred c
Confidence 3
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=341.99 Aligned_cols=207 Identities=29% Similarity=0.360 Sum_probs=175.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (723)
+.++|+++.+.+ +. .|+|+.+++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++.. ..+
T Consensus 1 i~~~~l~~~~~~-----~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~---G~i~~~g~~~~~~~~~~~ 70 (211)
T cd03298 1 VRLDKIRFSYGE-----QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQS---GRVLINGVDVTAAPPADR 70 (211)
T ss_pred CEEEeEEEEeCC-----Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEcCcCCHhHc
Confidence 368999998842 22 39999999999999999999999999999999998875 999999987532 234
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004932 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
.++|++|++.+++.+||+||+.+........ ....+++++++++.++|.+..++.+ .+||||||||++|||||
T Consensus 71 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~ia~al 143 (211)
T cd03298 71 PVSMLFQENNLFAHLTVEQNVGLGLSPGLKL-TAEDRQAIEVALARVGLAGLEKRLP------GELSGGERQRVALARVL 143 (211)
T ss_pred cEEEEecccccCCCCcHHHHHhcccccccCc-cHHHHHHHHHHHHHcCCHHHHhCCc------ccCCHHHHHHHHHHHHH
Confidence 6999999999999999999998754321111 1123557889999999988877754 49999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||+++|++ .++.++||++++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999985 489999988887 5788999999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=367.08 Aligned_cols=204 Identities=26% Similarity=0.352 Sum_probs=178.3
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe----CCC---------CCceEEEEc
Q 004932 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK----SEM---------PYGSYGFVE 188 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~----~~~---------~~~~~~yv~ 188 (723)
...+|+|+||.+++||+++|+|+||||||||+|+|+|+++|+. |+|.++|++ ... ..+.++|++
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~---G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSR---GSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 4568999999999999999999999999999999999999875 999999962 211 114699999
Q ss_pred CCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 004932 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHV 268 (723)
Q Consensus 189 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~l 268 (723)
|+..++|.+||+||+.++...... ...+.+++++++++.+||.+..++.+ .+|||||||||+|||||+.+|+|
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~g~-~~~~~~~~a~e~le~vgL~~~~~~~~------~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQGM-PEAERRKRVDEQLELVGLAQWADKKP------GELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchhhcCCh------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999987643211 11234567899999999998887755 49999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 269 LFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 269 LlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
|||||||+|||+.++..+.+.|++++++ |+|+|+++|+. +++.++||||++|++|+++..|+++++.
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999864 89999998887 5788999999999999999999998875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=344.79 Aligned_cols=214 Identities=24% Similarity=0.313 Sum_probs=182.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (723)
++++||++.|.. + ..|+|+.+++||+++|+||||||||||+++|+|+.+|.+ |+|.++|++... ..+
T Consensus 2 l~~~~l~~~~~~-----~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 2 LKLTDITWLYHH-----L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPAS---GSLTLNGQDHTTTPPSRR 71 (232)
T ss_pred eEEEEEEEEECC-----c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCeecCcCChhhc
Confidence 679999999842 1 238999999999999999999999999999999998875 999999987532 124
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004932 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
.++|++|++.+++.+|+.||+.+....... .....+++++++++.+||.+..++.+ +.||||||||++|||+|
T Consensus 72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~laral 144 (232)
T PRK10771 72 PVSMLFQENNLFSHLTVAQNIGLGLNPGLK-LNAAQREKLHAIARQMGIEDLLARLP------GQLSGGQRQRVALARCL 144 (232)
T ss_pred cEEEEecccccccCCcHHHHHhcccccccC-CCHHHHHHHHHHHHHcCcHHHHhCCc------ccCCHHHHHHHHHHHHH
Confidence 699999999999999999999765321111 11123566899999999988887755 49999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
+.+|++|||||||+|||+.++..+.+.|+++++ .|+|+|+++|++ .++.++||++++|++|++++.|+++++.+
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSL-EDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999976 489999999987 47889999999999999999999877643
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=352.47 Aligned_cols=218 Identities=23% Similarity=0.341 Sum_probs=185.9
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..+.++||++.|+ ++.+|+|+|+.+.+||+++|+||||||||||+++|+|+++|+. |+|.++|+++...
T Consensus 6 ~~l~i~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~ 77 (265)
T PRK10253 6 ARLRGEQLTLGYG-----KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAH---GHVWLDGEHIQHYASK 77 (265)
T ss_pred cEEEEEEEEEEEC-----CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---cEEEECCEEhhhCCHH
Confidence 3689999999984 3469999999999999999999999999999999999998874 9999999875321
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCC---CccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004932 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
.+.++|++|++.+++.+|++||+.+......+ ......+++++++++.+||.+..++.+ +.||||||||
T Consensus 78 ~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~Gq~qr 151 (265)
T PRK10253 78 EVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV------DTLSGGQRQR 151 (265)
T ss_pred HHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc------ccCChHHHHH
Confidence 24689999999999999999999764211100 001123456889999999988777644 5999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||+++|++ .++.++||++++|++|++++.|++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL-NQACRYASHLIALREGKIVAQGAPKE 230 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999986 489999998887 47899999999999999999999887
Q ss_pred HH
Q 004932 335 CL 336 (723)
Q Consensus 335 ~~ 336 (723)
+.
T Consensus 231 ~~ 232 (265)
T PRK10253 231 IV 232 (265)
T ss_pred Hh
Confidence 64
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=346.90 Aligned_cols=223 Identities=22% Similarity=0.312 Sum_probs=183.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (723)
.++++|+++.|. ++.+|+|+|+.+++||+++|+|+||||||||+++|+|+++ |....+|+|.++|+++..
T Consensus 4 ~l~~~nl~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 4 KVKLEQLNVHFG-----KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred EEEEEEEEEEeC-----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 589999999984 3469999999999999999999999999999999999985 321135999999987531
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004932 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
.++.++|++|+..+++.+|++||+.+.............+++++++++.+++.+...... +..+..||||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~qr 156 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRL--KSNAMELSGGQQQR 156 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHh--hCCcCcCCHHHHHH
Confidence 134699999999999999999999875432210011123456788999999864322211 22556999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|+++++
T Consensus 157 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 157 LCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNM-QQAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999976 58999988987 478899999999999999999998876
Q ss_pred H
Q 004932 336 L 336 (723)
Q Consensus 336 ~ 336 (723)
.
T Consensus 235 ~ 235 (252)
T PRK14256 235 F 235 (252)
T ss_pred H
Confidence 4
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=350.69 Aligned_cols=216 Identities=29% Similarity=0.408 Sum_probs=184.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (723)
+.++|+++.+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|+++|+. |+|.++|++....
T Consensus 2 l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 73 (256)
T TIGR03873 2 LRLSRVSWSAG-----GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDA---GTVDLAGVDLHGLSRRAR 73 (256)
T ss_pred ceEEeEEEEEC-----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---CEEEECCEEcccCCHHHH
Confidence 57899999984 3469999999999999999999999999999999999998875 9999999875321
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHH-h-cCCC-ccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004932 181 YGSYGFVERETTLIGSLTVREYLYYSAL-L-QLPG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~-~-~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
.+.++|++|++.+++.+||.||+.+... . .... ...+..+++.++++.+++.+..++.+ ..||||||||++
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~ 147 (256)
T TIGR03873 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM------STLSGGERQRVH 147 (256)
T ss_pred hhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc------ccCCHHHHHHHH
Confidence 2358999999888888999999987421 1 1000 11123456889999999988777754 499999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
|||||+.+|+++||||||+|||+.++..+.+.|++++++|.|||+++|++. .+.++||++++|++|++++.|+.+++.
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 999999999999999999999999999999999999877899999999874 788999999999999999999987753
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=347.39 Aligned_cols=222 Identities=19% Similarity=0.265 Sum_probs=181.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC---CCCCCCceeEEEECCEeCCC--
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR---LPHSARMYGEVFVNGAKSEM-- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~---~~~~~~~~G~I~i~G~~~~~-- 179 (723)
.++++|+++.+. .+.+|+|+|+.+++||+++|+||||||||||+|+|+|+ .++. ..+|+|.++|++...
T Consensus 3 ~l~~~~~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14245 3 KIDARDVNFWYG-----DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKG 76 (250)
T ss_pred EEEEEEEEEEEC-----CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEeccccc
Confidence 588999999984 35699999999999999999999999999999999997 3432 125999999987532
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHH
Q 004932 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (723)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (723)
.++.++|++|++.+++ .|+.||+.+....+........++.++++++.++|.+...... +..+..|||||||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~q 153 (250)
T PRK14245 77 VQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKL--KESAFALSGGQQQ 153 (250)
T ss_pred ccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhh--hCCcccCCHHHHH
Confidence 1246999999998887 6999999876543211111123456889999999865322211 2355699999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|++|||+|+.+|++|||||||+|||+.++..+.+.|++++ +++|||+++|++. ++.++||++++|++|++++.|++++
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999995 4789999999874 7889999999999999999999988
Q ss_pred HHH
Q 004932 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
+.+
T Consensus 232 ~~~ 234 (250)
T PRK14245 232 IFT 234 (250)
T ss_pred Hhc
Confidence 743
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=346.55 Aligned_cols=211 Identities=25% Similarity=0.412 Sum_probs=181.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++|+++.+. ++.+|+|+|+++.+||+++|+||||||||||+++|+|+.+|+. |+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 74 (241)
T PRK14250 3 EIEFKEVSYSSF-----GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTE---GSILIDGVDIKTIDVID 74 (241)
T ss_pred eEEEEeEEEEeC-----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEhhhcChHH
Confidence 478999999884 3469999999999999999999999999999999999998875 999999987431
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
.++.++|++|++.+++ .||+||+.+....+ . ...+++.++++.++|. +..++. +..||||||||++|
T Consensus 75 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~--~---~~~~~~~~~l~~~~l~~~~~~~~------~~~LS~G~~qrl~l 142 (241)
T PRK14250 75 LRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK--G---EKNVDVEYYLSIVGLNKEYATRD------VKNLSGGEAQRVSI 142 (241)
T ss_pred hhhcEEEEecCchhch-hhHHHHHhcchhhc--C---cHHHHHHHHHHHcCCCHHHhhCC------cccCCHHHHHHHHH
Confidence 1346999999998886 69999997643221 1 1235678899999996 566654 45999999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 143 ARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999986 489999998987 4788899999999999999999988764
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=348.79 Aligned_cols=223 Identities=22% Similarity=0.280 Sum_probs=181.5
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~--~~~~~~G~I~i~G~~~~~-- 179 (723)
..++++|+++.|+ ++.+|+|+|+.+++||+++|+||||||||||+++|+|+++ |....+|+|.++|+++..
T Consensus 12 ~~l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 12 SKIQVRNLNFYYG-----KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred ceEEEEEEEEEeC-----CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 4689999999984 2469999999999999999999999999999999999986 211135999999987531
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHH
Q 004932 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (723)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (723)
.++.++|++|+..+++ .||+||+.+...........+.+++++++++.+++.+...... +..+.+|||||||
T Consensus 87 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~Gq~q 163 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKL--HQSGYSLSGGQQQ 163 (260)
T ss_pred cchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH--hcCCCCCCHHHHH
Confidence 1346999999988887 8999999876532211111123456889999999853211111 2245699999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.++||++++|++|++++.|++++
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNM-QQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999964 78999988987 47888999999999999999999887
Q ss_pred HH
Q 004932 335 CL 336 (723)
Q Consensus 335 ~~ 336 (723)
+.
T Consensus 242 ~~ 243 (260)
T PRK10744 242 IF 243 (260)
T ss_pred HH
Confidence 64
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=348.28 Aligned_cols=224 Identities=22% Similarity=0.306 Sum_probs=182.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~--~~~G~I~i~G~~~~~--- 179 (723)
.++++|+++.|. ++.+|+|+|+.+++||+++|+||||||||||+++|+|+.+|.. ..+|+|.++|+++..
T Consensus 4 ~l~i~~v~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~ 78 (258)
T PRK14241 4 RIDVKDLNIYYG-----SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78 (258)
T ss_pred cEEEeeEEEEEC-----CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc
Confidence 488999999984 3469999999999999999999999999999999999986410 125999999987521
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004932 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
.++.++|++|+..+++.+||+||+.+.............+++++++++.+||.+...... +..+.+||||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~qr 156 (258)
T PRK14241 79 DPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRL--DKPGGGLSGGQQQR 156 (258)
T ss_pred ChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHh--hCCcccCCHHHHHH
Confidence 124699999999999999999999876543211111123456788999999853211111 23456999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe------CCeEEEE
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS------NGNTLFF 329 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~------~G~iv~~ 329 (723)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|+ +|++++.
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~-~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 157 LCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNM-QQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccCCCCceEEec
Confidence 9999999999999999999999999999999999999964 68999988987 47889999999997 7999999
Q ss_pred eChhHHHH
Q 004932 330 GETLACLQ 337 (723)
Q Consensus 330 G~~~~~~~ 337 (723)
|+++++.+
T Consensus 235 ~~~~~~~~ 242 (258)
T PRK14241 235 DDTEKIFS 242 (258)
T ss_pred CCHHHHHh
Confidence 99887643
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=341.17 Aligned_cols=212 Identities=28% Similarity=0.279 Sum_probs=178.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++||++.|.++. ....+|+|+|+.+++||+++|+||||||||||+++|+|+++|+. |+|.++|++....
T Consensus 6 ~l~~~~l~~~~~~~~-~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 6 IVEVHHLKKSVGQGE-HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSS---GEVSLVGQPLHQMDEEA 81 (228)
T ss_pred eEEEeeeEEEccCCC-cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---eeEEECCEEcccCCHHH
Confidence 589999999985311 01359999999999999999999999999999999999998875 9999999875321
Q ss_pred -----CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004932 181 -----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
.+.++|++|++.+++.+|+.||+.+....+. ......+++++++++.++|.+..++.+ ..||||||||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~Ge~qr 154 (228)
T PRK10584 82 RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG-ESSRQSRNGAKALLEQLGLGKRLDHLP------AQLSGGEQQR 154 (228)
T ss_pred HHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCHhHhhCCh------hhCCHHHHHH
Confidence 1469999999999999999999987653321 111224567889999999988777754 4999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (723)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++. .+ +.||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999999764 899999999975 55 45999999999999753
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=338.59 Aligned_cols=220 Identities=24% Similarity=0.385 Sum_probs=199.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCce
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGS 183 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~-~~~~ 183 (723)
.+++++|++++ +++++++|+||.++||++++++|||||||||.+|+|.|+++|++ |+|.++|.+... .+.+
T Consensus 2 ~L~ie~vtK~F-----g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~---G~I~~~g~~~~~~~~~r 73 (300)
T COG4152 2 ALEIEGVTKSF-----GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTE---GEITWNGGPLSQEIKNR 73 (300)
T ss_pred ceEEecchhcc-----CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccC---ceEEEcCcchhhhhhhh
Confidence 47899999998 46789999999999999999999999999999999999999975 999999988654 3467
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 004932 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (723)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~ 263 (723)
|||.|.+..|+|.+||.|.|.|.+.++--. ..+.+++++.+|+++++.....+++. +||.|++|++.+-.+++
T Consensus 74 IGyLPEERGLy~k~tv~dql~yla~LkGm~-~~e~~~~~~~wLer~~i~~~~~~kIk------~LSKGnqQKIQfisavi 146 (300)
T COG4152 74 IGYLPEERGLYPKMTVEDQLKYLAELKGMP-KAEIQKKLQAWLERLEIVGKKTKKIK------ELSKGNQQKIQFISAVI 146 (300)
T ss_pred cccChhhhccCccCcHHHHHHHHHHhcCCc-HHHHHHHHHHHHHhccccccccchHH------HhhhhhhHHHHHHHHHh
Confidence 999999999999999999999998876211 12356778999999999988877665 99999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHhh
Q 004932 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFS 340 (723)
Q Consensus 264 ~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~ 340 (723)
++|+++|||||+|||||.+.+.+.+.+.+++++|.|||+++|.. +.+.++||++++|++|+.|.+|+.+++...|.
T Consensus 147 HePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 147 HEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred cCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchH-HHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 99999999999999999999999999999999999999998886 68999999999999999999999999887543
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=348.28 Aligned_cols=224 Identities=20% Similarity=0.272 Sum_probs=182.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~--~~~~~~G~I~i~G~~~~~-- 179 (723)
..++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++ |....+|+|.++|++...
T Consensus 11 ~~l~i~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~ 85 (259)
T PRK14274 11 EVYQINGMNLWYG-----QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85 (259)
T ss_pred ceEEEeeEEEEEC-----CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence 3689999999984 3469999999999999999999999999999999999986 321135999999987531
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHH
Q 004932 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (723)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (723)
.++.++|++|++.+++. ||+||+.+...........+..++++++++.+++.+...... +..+.+|||||||
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l--~~~~~~LS~Gq~q 162 (259)
T PRK14274 86 VDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRL--HTQALSLSGGQQQ 162 (259)
T ss_pred cCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhh--hCCcccCCHHHHH
Confidence 12469999999988875 999999876433211111123456788899999864321111 2345699999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|+++|++ ..+.++||++++|++|+++..|++++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 240 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNM-QQAARVSDQTAFFYMGELVECNDTNK 240 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999975 78999999987 47889999999999999999999887
Q ss_pred HHH
Q 004932 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
+.+
T Consensus 241 ~~~ 243 (259)
T PRK14274 241 MFS 243 (259)
T ss_pred Hhh
Confidence 643
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=345.47 Aligned_cols=222 Identities=26% Similarity=0.327 Sum_probs=180.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (723)
.++++|+++.|. ++.+|+|+|+.+++||+++|+||||||||||+++|+|+.+ |+...+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14239 5 ILQVSDLSVYYN-----KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79 (252)
T ss_pred eEEEEeeEEEEC-----CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc
Confidence 589999999984 3469999999999999999999999999999999999853 521125999999987521
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004932 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
.++.++|++|+..+++ .||+||+.+.............+++++++++.+++.+...... +..+++||||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~qr 156 (252)
T PRK14239 80 DTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRL--HDSALGLSGGQQQR 156 (252)
T ss_pred chHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHH--hcCcccCCHHHHHH
Confidence 1346999999998887 8999999876433211111113456788899998853221111 23556999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|++++.|+++++
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSM-QQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999975 68999988987 478899999999999999999998876
Q ss_pred H
Q 004932 336 L 336 (723)
Q Consensus 336 ~ 336 (723)
.
T Consensus 235 ~ 235 (252)
T PRK14239 235 F 235 (252)
T ss_pred H
Confidence 4
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=364.09 Aligned_cols=207 Identities=23% Similarity=0.355 Sum_probs=180.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (723)
+++ ||+++|.+ + .+ |+|+.+++||+++|+||||||||||||+|+|+++|++ |+|.++|++...
T Consensus 2 l~~-~l~k~~~~-----~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~---G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 2 LEL-NFKQQLGD-----L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQK---GRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred eEE-EEEEEeCC-----E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccccccc
Confidence 455 88888842 2 23 8999999999999999999999999999999998875 999999987421
Q ss_pred ---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH
Q 004932 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (723)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (723)
..+.++|++|+..+++.+||+||+.++.. ...+++++++++.+||.+..++.+ ++|||||||||
T Consensus 71 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgGq~qRv 137 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA-------KSMVAQFDKIVALLGIEPLLDRYP------GSLSGGEKQRV 137 (352)
T ss_pred cchhhCCEEEEcCCcccCCCCcHHHHHHhhhh-------hhhHHHHHHHHHHcCCchhhhCCc------ccCCHHHHHHH
Confidence 13569999999999999999999987532 123456889999999998887754 49999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 257 ~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++.++||++++|++|+++..|+++++
T Consensus 138 alaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~i 216 (352)
T PRK11144 138 AIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEEV 216 (352)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999865 89999998987 578999999999999999999999987
Q ss_pred HH
Q 004932 336 LQ 337 (723)
Q Consensus 336 ~~ 337 (723)
..
T Consensus 217 ~~ 218 (352)
T PRK11144 217 WA 218 (352)
T ss_pred Hh
Confidence 64
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=351.80 Aligned_cols=221 Identities=23% Similarity=0.305 Sum_probs=185.2
Q ss_pred eEEEEeEEEEEecccc-cccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 004932 105 SVVWKDLTVTIKGKRR-YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~-~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (723)
.++++|+++.|++..+ ..+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|+. |+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~i~g~~i~~~~~~ 80 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE---GKVYVDGLDTSDEENL 80 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEeccccccH
Confidence 5899999999953211 13569999999999999999999999999999999999999875 999999987532
Q ss_pred --CCceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH
Q 004932 180 --PYGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (723)
Q Consensus 180 --~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (723)
..+.++|++|++. .+...||.|++.|...... ....+.+++++++++.+||.+..++.+ ++|||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LS~G~~qrv 153 (280)
T PRK13633 81 WDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLG-IPPEEIRERVDESLKKVGMYEYRRHAP------HLLSGGQKQRV 153 (280)
T ss_pred HHHhhheEEEecChhhhhccccHHHHHHhhHhhcC-CCHHHHHHHHHHHHHHCCCHhHhhCCc------ccCCHHHHHHH
Confidence 1346899999973 2234699999988654221 111124567899999999998887755 49999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 257 ~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||+++|++. ++.. ||++++|++|++++.|+++++
T Consensus 154 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~~~ 231 (280)
T PRK13633 154 AIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRIIVMDSGKVVMEGTPKEI 231 (280)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999986 4999999999985 5655 999999999999999999887
Q ss_pred HH
Q 004932 336 LQ 337 (723)
Q Consensus 336 ~~ 337 (723)
..
T Consensus 232 ~~ 233 (280)
T PRK13633 232 FK 233 (280)
T ss_pred hc
Confidence 54
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=342.36 Aligned_cols=215 Identities=28% Similarity=0.376 Sum_probs=185.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (723)
+.++|+++.+. .+.+++|+|+.+++||+++|+|+||||||||+++|+|.++|.. |+|.++|++... ..+
T Consensus 1 l~~~~l~~~~~-----~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03300 1 IELENVSKFYG-----GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTS---GEILLDGKDITNLPPHKR 72 (232)
T ss_pred CEEEeEEEEeC-----CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEcCcCChhhc
Confidence 36899999884 3469999999999999999999999999999999999999875 999999987532 235
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004932 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
.++|++|++.+++.+|++||+.+....... ......++++++++.+|+.+..++.+ ..||||||||++|||||
T Consensus 73 ~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~lS~G~~qrl~laral 145 (232)
T cd03300 73 PVNTVFQNYALFPHLTVFENIAFGLRLKKL-PKAEIKERVAEALDLVQLEGYANRKP------SQLSGGQQQRVAIARAL 145 (232)
T ss_pred ceEEEecccccCCCCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchhhcCCh------hhCCHHHHHHHHHHHHH
Confidence 699999999999899999999876543311 11123456789999999988887754 49999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
+.+|+++||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+.++..
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999999999999999999864 89999999987 4788999999999999999999877654
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=348.62 Aligned_cols=223 Identities=20% Similarity=0.287 Sum_probs=182.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~--~~~~G~I~i~G~~~~~-- 179 (723)
..++++||++.|. ++.+|+|+|+.+++||+++|+||||||||||+++|+|+.+|. ...+|+|.++|+++..
T Consensus 18 ~~l~~~nl~~~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 18 IKMRARDVSVFYG-----EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred ceEEEEeEEEEEC-----CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 3689999999984 346999999999999999999999999999999999998741 0125999999987531
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHH
Q 004932 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253 (723)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGer 253 (723)
.++.++|++|++.+++. ||.||+.+....+... ......++++++++.++|.+...... +..+..||||||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LSgGq~ 169 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRL--HEPGTGLSGGQQ 169 (267)
T ss_pred cchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHh--hCCcccCCHHHH
Confidence 12468999999888875 9999998865432110 11123456889999999965322111 224569999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ ..+.++||++++|++|++++.|+++
T Consensus 170 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 170 QRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSM-QQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCH-HHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999975 68999988887 4788999999999999999999987
Q ss_pred HHH
Q 004932 334 ACL 336 (723)
Q Consensus 334 ~~~ 336 (723)
++.
T Consensus 248 ~~~ 250 (267)
T PRK14235 248 KMF 250 (267)
T ss_pred HHH
Confidence 764
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=344.40 Aligned_cols=222 Identities=20% Similarity=0.279 Sum_probs=181.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++|+++.|+ .+.+|+|+|+++++||+++|+||||||||||+|+|+|++++....+|+|.++|+++..
T Consensus 2 ~~~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~ 76 (246)
T PRK14269 2 IAKTTNLNLFYG-----KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVA 76 (246)
T ss_pred ceeeeeeEEEEC-----CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHH
Confidence 367899999984 3469999999999999999999999999999999999975311125999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-CccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
.++.++|++|++.+++ .||+||+.+....+.. ......+++++++++.++|.+...... +..+..|||||||||+|
T Consensus 77 ~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 77 LRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKL--KQNALALSGGQQQRLCI 153 (246)
T ss_pred HhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHh--cCCcccCCHHHHHHHHH
Confidence 1246999999998887 6999999876433211 011123456789999999964332222 23556999999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|+|+++|++ .++.++||++++|++|++++.|++++..
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNM-QQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCH-HHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999965 88999999987 4788999999999999999999988764
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=354.45 Aligned_cols=220 Identities=18% Similarity=0.274 Sum_probs=182.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++|+++.|.++......+|+|+|+.+++||+++|+||||||||||+|+|+|+++|+. |+|.++|++...
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISET---GQTIVGDYAIPANLKKI 82 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEEcccccccc
Confidence 589999999985321111359999999999999999999999999999999999998875 999999986421
Q ss_pred -----CCceEEEEcCCCc--cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCCHH
Q 004932 180 -----PYGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCG 251 (723)
Q Consensus 180 -----~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGG 251 (723)
.++.++|++|++. ++ ..||+||+.+..... ........++++++++.++|. +..++.+ ..||||
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~-~~~~~~~~~~~~~ll~~~~L~~~~~~~~~------~~LS~G 154 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLF-QETIEKDIAFGPVNL-GENKQEAYKKVPELLKLVQLPEDYVKRSP------FELSGG 154 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhh-hhHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChhHhcCCh------hhCCHH
Confidence 1246899999963 44 469999998764321 111112345678899999994 5666644 599999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 252 erqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++ +++.++||++++|++|++++.|
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999986 489999998887 4788999999999999999999
Q ss_pred ChhHHH
Q 004932 331 ETLACL 336 (723)
Q Consensus 331 ~~~~~~ 336 (723)
+++++.
T Consensus 234 ~~~~~~ 239 (289)
T PRK13645 234 SPFEIF 239 (289)
T ss_pred CHHHHh
Confidence 988764
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=338.55 Aligned_cols=208 Identities=26% Similarity=0.383 Sum_probs=177.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (723)
++++||++.|. .+++|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++... ..+
T Consensus 1 ~~~~~l~~~~~-------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 70 (213)
T TIGR01277 1 LALDKVRYEYE-------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPAS---GSIKVNDQSHTGLAPYQR 70 (213)
T ss_pred CeEEeeeEEeC-------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEEcccCChhcc
Confidence 36899999883 24689999999999999999999999999999999999875 999999987532 235
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004932 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
.++|++|++.+++.+|+.||+.+....... .....+++++++++.+||.+..++.+ +.||||||||++|||+|
T Consensus 71 ~i~~v~q~~~~~~~~t~~en~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~laral 143 (213)
T TIGR01277 71 PVSMLFQENNLFAHLTVRQNIGLGLHPGLK-LNAEQQEKVVDAAQQVGIADYLDRLP------EQLSGGQRQRVALARCL 143 (213)
T ss_pred ceEEEeccCccCCCCcHHHHHHhHhhccCC-ccHHHHHHHHHHHHHcCcHHHhhCCc------ccCCHHHHHHHHHHHHH
Confidence 699999999999999999999765432111 11123456888999999988777754 59999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004932 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++ .++.++||++++|++|++++.|+
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999999864 89999988887 47788999999999999998875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=348.34 Aligned_cols=228 Identities=20% Similarity=0.275 Sum_probs=188.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++|+++.|.+ ..+.+|+|+|+.+++||+++|+||||||||||+++|+|+++|+. |+|.++|++....
T Consensus 7 ~l~i~~l~~~~~~---~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~~~~~~~~~ 80 (269)
T PRK13648 7 IIVFKNVSFQYQS---DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKS---GEIFYNNQAITDDNFEK 80 (269)
T ss_pred eEEEEEEEEEcCC---CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEECCcCCHHH
Confidence 5899999999852 12459999999999999999999999999999999999998874 9999999875321
Q ss_pred -CceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 181 -YGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
++.++|++|++. +++..|+.+|+.+....... ......++++++++.+++.+..++.+ ++||||||||++|
T Consensus 81 ~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~l 153 (269)
T PRK13648 81 LRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAV-PYDEMHRRVSEALKQVDMLERADYEP------NALSGGQKQRVAI 153 (269)
T ss_pred HHhheeEEEeChHHhcccccHHHHHHhhHHhcCC-CHHHHHHHHHHHHHHcCCchhhhCCc------ccCCHHHHHHHHH
Confidence 246899999974 67778999999876432211 11123456889999999988777644 5999999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.. ||++++|++|++++.|+++++.+
T Consensus 154 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 154 AGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999999864 899999999985 5655 99999999999999999988643
Q ss_pred ---HhhhcCCCCC
Q 004932 338 ---HFSNAGFPCP 347 (723)
Q Consensus 338 ---~f~~~g~~~~ 347 (723)
.+...|.++|
T Consensus 232 ~~~~~~~~~~~~~ 244 (269)
T PRK13648 232 HAEELTRIGLDLP 244 (269)
T ss_pred CHHHHHhcCCCCC
Confidence 2333454443
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=349.91 Aligned_cols=218 Identities=21% Similarity=0.284 Sum_probs=184.5
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (723)
..++++|+++.+.+ ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|++...
T Consensus 6 ~~l~~~nl~~~~~~---~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~i~~~~~~ 79 (271)
T PRK13632 6 VMIKVENVSFSYPN---SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQS---GEIKIDGITISKENLK 79 (271)
T ss_pred eEEEEEeEEEEcCC---CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEecCcCCHH
Confidence 36899999998842 13469999999999999999999999999999999999998874 999999987532
Q ss_pred -CCceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004932 180 -PYGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 180 -~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
.++.++|++|++. .++.+||+||+.+...... ....+.+++++++++.+||.+..++.+ ..||||||||++
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~ 152 (271)
T PRK13632 80 EIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKK-VPPKKMKDIIDDLAKKVGMEDYLDKEP------QNLSGGQKQRVA 152 (271)
T ss_pred HHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHcCCHHHhhCCc------ccCCHHHHHHHH
Confidence 1346899999973 6677899999987643221 111123456889999999998887754 499999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
|||||+.+|++|||||||+|||+.++..+++.|++++++ ++|||+++|++. ++ ..||++++|++|++++.|+++++.
T Consensus 153 laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 153 IASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999876 589999999985 45 479999999999999999988764
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=342.97 Aligned_cols=215 Identities=28% Similarity=0.403 Sum_probs=185.8
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (723)
++++|+++.|. .+.+|+|+|+++.+||+++|+||||||||||+++|+|+++|.. |+|.++|.+... ..+
T Consensus 1 i~i~~l~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~i~g~~~~~~~~~~~ 72 (237)
T TIGR00968 1 IEIANISKRFG-----SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDS---GRIRLNGQDATRVHARDR 72 (237)
T ss_pred CEEEEEEEEEC-----CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEcCcCChhhc
Confidence 36899999884 3469999999999999999999999999999999999998864 999999987532 234
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004932 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
.++|++|++.+++.+|+.||+.+....+.. ......+.++++++.+++.+..++.+ ..|||||+||++|||+|
T Consensus 73 ~i~~~~q~~~~~~~~t~~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~lS~G~~qrl~laral 145 (237)
T TIGR00968 73 KIGFVFQHYALFKHLTVRDNIAFGLEIRKH-PKAKIKARVEELLELVQLEGLGDRYP------NQLSGGQRQRVALARAL 145 (237)
T ss_pred CEEEEecChhhccCCcHHHHHHhHHHhcCC-CHHHHHHHHHHHHHHcCCHhHhhCCh------hhCCHHHHHHHHHHHHH
Confidence 699999999999999999999876543211 11123456789999999988777754 49999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+.+++.
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999875 89999999987 4788999999999999999999987764
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=344.78 Aligned_cols=223 Identities=20% Similarity=0.269 Sum_probs=181.9
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~--~~~~G~I~i~G~~~~~-- 179 (723)
..++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|. ...+|+|.++|+++..
T Consensus 3 ~~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (251)
T PRK14270 3 IKMESKNLNLWYG-----EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77 (251)
T ss_pred cEEEEEEeEEEEC-----CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccc
Confidence 3588999999884 346999999999999999999999999999999999998641 0135999999987531
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHH
Q 004932 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (723)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (723)
.++.++|++|++.+++ +|++||+.+..............++++++++.+++.+...... +..+.+|||||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~q 154 (251)
T PRK14270 78 VDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDL--KKSALKLSGGQQQ 154 (251)
T ss_pred ccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHh--hCCcccCCHHHHH
Confidence 1246999999998887 8999999876543211111123456788999998853211111 2345699999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|+++|++ .++.++||++++|++|++++.|++++
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNM-QQASRVSDYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCH-HHHHHhcCEEEEEECCeEEEeCCHHH
Confidence 99999999999999999999999999999999999999976 58999988887 47889999999999999999999887
Q ss_pred HH
Q 004932 335 CL 336 (723)
Q Consensus 335 ~~ 336 (723)
+.
T Consensus 233 ~~ 234 (251)
T PRK14270 233 IF 234 (251)
T ss_pred Hh
Confidence 64
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=346.86 Aligned_cols=217 Identities=23% Similarity=0.281 Sum_probs=181.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-----CCC
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-----SEM 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~-----~~~ 179 (723)
.++++|+++.+. ++.+|+|+|+.+++||+++|+||||||||||+|+|+|+++|+. |+|.++|++ +..
T Consensus 6 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~i~~ 77 (258)
T PRK11701 6 LLSVRGLTKLYG-----PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDA---GEVHYRMRDGQLRDLYA 77 (258)
T ss_pred eEEEeeeEEEcC-----CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCcccccccccc
Confidence 589999999984 3469999999999999999999999999999999999998875 999999986 421
Q ss_pred C---------CceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HhhhhhcCCCCCCC
Q 004932 180 P---------YGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKG 247 (723)
Q Consensus 180 ~---------~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~ 247 (723)
. .+.++|++|++ .+++.+|+.||+.+.............++++.++++.+++.+ ..++. +..
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~ 151 (258)
T PRK11701 78 LSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDL------PTT 151 (258)
T ss_pred CCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCC------Ccc
Confidence 1 23589999997 467788999999764321110111123456788999999974 56654 459
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004932 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 248 LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++ ..+.++||++++|++|++
T Consensus 152 LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~~~~d~i~~l~~g~i 230 (258)
T PRK11701 152 FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLAHRLLVMKQGRV 230 (258)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999864 89999988887 478889999999999999
Q ss_pred EEEeChhHHH
Q 004932 327 LFFGETLACL 336 (723)
Q Consensus 327 v~~G~~~~~~ 336 (723)
++.|+++++.
T Consensus 231 ~~~~~~~~~~ 240 (258)
T PRK11701 231 VESGLTDQVL 240 (258)
T ss_pred EEeCCHHHHh
Confidence 9999988764
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=363.37 Aligned_cols=208 Identities=27% Similarity=0.393 Sum_probs=180.0
Q ss_pred eEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---------C
Q 004932 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---------P 180 (723)
Q Consensus 110 ~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---------~ 180 (723)
||++.|. ++. + |+|+.+++||+++|+||||||||||||+|+|+++|++ |+|.++|++... .
T Consensus 4 ~l~~~~~-----~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~---G~I~~~g~~i~~~~~~~~~~~~ 73 (354)
T TIGR02142 4 RFSKRLG-----DFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDE---GEIVLNGRTLFDSRKGIFLPPE 73 (354)
T ss_pred EEEEEEC-----CEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECccCccccccchh
Confidence 6777773 223 4 9999999999999999999999999999999999875 999999987521 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHH
Q 004932 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (723)
++.++|++|++.+++.+||+||+.++.... . ..+.+++++++++.+||.+..++.+ ++|||||||||+|||
T Consensus 74 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-~--~~~~~~~~~~~l~~~gL~~~~~~~~------~~LSgGqkqRvalAr 144 (354)
T TIGR02142 74 KRRIGYVFQEARLFPHLSVRGNLRYGMKRA-R--PSERRISFERVIELLGIGHLLGRLP------GRLSGGEKQRVAIGR 144 (354)
T ss_pred hCCeEEEecCCccCCCCcHHHHHHHHhhcc-C--hhHHHHHHHHHHHHcCChhHhcCCh------hhCCHHHHHHHHHHH
Confidence 346999999999999999999998865321 1 1123556899999999998887754 499999999999999
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 261 aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++..+||++++|++|++++.|+++++..
T Consensus 145 aL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 145 ALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred HHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 999999999999999999999999999999999865 89999999987 47889999999999999999999988754
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=343.08 Aligned_cols=222 Identities=23% Similarity=0.338 Sum_probs=180.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARMYGEVFVNGAKSEM--- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~--~~~~~G~I~i~G~~~~~--- 179 (723)
.++++||++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ....+|+|.++|++...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14240 3 KISVKDLDLFYG-----DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77 (250)
T ss_pred eEEEEEEEEEEC-----CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 478999999984 34699999999999999999999999999999999998753 11135999999987531
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004932 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
.++.++|++|++.+++ +|+.||+.+.............+++++++++.+++.+...... +..+.+||||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~G~~qr 154 (250)
T PRK14240 78 DVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRL--KKSALGLSGGQQQR 154 (250)
T ss_pred chHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHH--hcCCCCCCHHHHHH
Confidence 1346899999988887 8999999886533211111123456788899998753221111 22456999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++ ..+.++||++++|++|++++.|+++++
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 155 LCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNM-QQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCH-HHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999964 78999988987 478899999999999999999998776
Q ss_pred H
Q 004932 336 L 336 (723)
Q Consensus 336 ~ 336 (723)
.
T Consensus 233 ~ 233 (250)
T PRK14240 233 F 233 (250)
T ss_pred H
Confidence 4
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=344.15 Aligned_cols=223 Identities=21% Similarity=0.331 Sum_probs=181.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARMYGEVFVNGAKSEM--- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~--~~~~~G~I~i~G~~~~~--- 179 (723)
.++++|+++.+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|+.++ ....+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~ 77 (250)
T PRK14262 3 IIEIENFSAYYG-----EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77 (250)
T ss_pred eEEEEeeEEEeC-----CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh
Confidence 478999999984 34699999999999999999999999999999999999874 10135999999987531
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004932 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
..+.++|++|++.+++ .|++||+.+.............++.++++++.+++.+..+... +..+.+||||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~Gq~qr 154 (250)
T PRK14262 78 DVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSEL--NKPGTRLSGGQQQR 154 (250)
T ss_pred hHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHH--hCChhhcCHHHHHH
Confidence 1346999999998887 8999999876533211111123456788899999864322211 23556999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|+++|++ +.+.++||++++|++|+++..|+++++
T Consensus 155 ~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 155 LCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNI-GQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999975 78999988987 468899999999999999999998876
Q ss_pred HH
Q 004932 336 LQ 337 (723)
Q Consensus 336 ~~ 337 (723)
.+
T Consensus 233 ~~ 234 (250)
T PRK14262 233 VE 234 (250)
T ss_pred Hh
Confidence 43
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=343.72 Aligned_cols=199 Identities=31% Similarity=0.422 Sum_probs=169.8
Q ss_pred eeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHH
Q 004932 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYY 205 (723)
Q Consensus 126 L~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~ 205 (723)
|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++........+|++|++.+++.+||.||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTS---GGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 578999999999999999999999999999999998875 99999998764322235899999999999999999987
Q ss_pred HHHhcCCCc-cchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 004932 206 SALLQLPGF-FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284 (723)
Q Consensus 206 ~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~ 284 (723)
......+.. ..+.+++++++++.+||.+..++.+ .+|||||||||+|||+|+.+|++|||||||+|||+.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 78 AVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRP------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCCh------hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 632111111 1123456889999999988777754 499999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 285 LMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 285 ~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
.+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+..+
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCcee
Confidence 999999999864 89999999987 47889999999999999999886544
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=335.62 Aligned_cols=195 Identities=31% Similarity=0.527 Sum_probs=166.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----P 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----~ 180 (723)
.+.|+||++.|+.++ .++.+|+|+|+.+++||+++|+||||||||||+++|+|++++....+|+|.++|.+... .
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGR-SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81 (202)
T ss_pred eEEEEccEEEeccCC-CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhh
Confidence 578999999997643 45679999999999999999999999999999999999998311125999999987532 2
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHH
Q 004932 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (723)
.+.++|++|++.+++.+||+||+.+..... . +..+..||||||||++|||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------------------------~------~~~~~~LS~Ge~qrl~lar 131 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------G------NEFVRGISGGERKRVSIAE 131 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhhc------------------------c------ccchhhCCHHHHHHHHHHH
Confidence 346999999999999999999997643110 2 2345699999999999999
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 261 aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
||+.+|++|||||||+|||+.++..+.+.|++++++ +.|+|+++||+.+++.++||++++|++|++++.|
T Consensus 132 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 132 ALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999865 6788888888767889999999999999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=343.56 Aligned_cols=222 Identities=22% Similarity=0.290 Sum_probs=182.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~--~~~G~I~i~G~~~~~--- 179 (723)
.++++|+++.|. ++.+|+|+|+.+.+||+++|+||||||||||+++|+|+++|.. ..+|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~-----~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 78 (251)
T PRK14249 4 KIKIRGVNFFYH-----KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78 (251)
T ss_pred eEEEEEEEEEEC-----CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccccc
Confidence 588999999984 3469999999999999999999999999999999999998751 124999999987521
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004932 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
.++.++|++|++.+++. |++||+.+....+........++.++++++.+++.+...... +..+..||||||||
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~Gq~qr 155 (251)
T PRK14249 79 DVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNL--HKSGLALSGGQQQR 155 (251)
T ss_pred ChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHh--hCCcccCCHHHHHH
Confidence 13569999999988875 999999876543211111113455777888888754322222 23566999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++. ++.|||+++|++ .++.++||++++|++|++++.|+++++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNM-QQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 999999999999999999999999999999999999995 589999999987 478899999999999999999998876
Q ss_pred H
Q 004932 336 L 336 (723)
Q Consensus 336 ~ 336 (723)
.
T Consensus 234 ~ 234 (251)
T PRK14249 234 F 234 (251)
T ss_pred H
Confidence 4
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=350.21 Aligned_cols=221 Identities=20% Similarity=0.275 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++|+++.|++ ..+.+|+|||+++.+||+++|+||||||||||+++|+|+++|+...+|+|.++|++....
T Consensus 5 ~l~i~~l~~~~~~---~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~ 81 (282)
T PRK13640 5 IVEFKHVSFTYPD---SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81 (282)
T ss_pred eEEEEEEEEEcCC---CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHH
Confidence 5899999999842 124699999999999999999999999999999999999988632248999999875321
Q ss_pred -CceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 181 -YGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
.+.++|++|++. .++..||.||+.+...... ....+..++++++++.+||.+..++. ++.||||||||++|
T Consensus 82 ~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~------~~~LS~G~~qrv~l 154 (282)
T PRK13640 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRA-VPRPEMIKIVRDVLADVGMLDYIDSE------PANLSGGQKQRVAI 154 (282)
T ss_pred HHhheEEEEECHHHhhccCCHHHHHHhhHHhCC-CCHHHHHHHHHHHHHHCCChhHhcCC------cccCCHHHHHHHHH
Confidence 246899999974 6677899999987643221 11112346788999999999877764 45999999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++ ..||++++|++|++++.|+++++.+
T Consensus 155 aral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 155 AGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999864 899999999985 55 5799999999999999999988754
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=346.19 Aligned_cols=223 Identities=21% Similarity=0.282 Sum_probs=182.9
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~--~~~~G~I~i~G~~~~~-- 179 (723)
..++++||++.+. .+.+|+|+|+++.+||+++|+|||||||||||++|+|+++|. ...+|+|.++|++...
T Consensus 19 ~~l~~~nl~~~~~-----~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 93 (267)
T PRK14237 19 IALSTKDLHVYYG-----KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE 93 (267)
T ss_pred eEEEEeeEEEEEC-----CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc
Confidence 3689999999983 357999999999999999999999999999999999998641 1135999999987531
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHH
Q 004932 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (723)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (723)
.++.++|++|++.+++ .||+||+.+.............++++.++++.++|.+..+... +..+++|||||||
T Consensus 94 ~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~--~~~~~~LS~G~~q 170 (267)
T PRK14237 94 INVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDL--HKSALTLSGGQQQ 170 (267)
T ss_pred CChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhh--cCCcccCCHHHHH
Confidence 1346999999988887 6999999876432210111123456788999999864322222 2356799999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++. ++.++||++++|++|++++.|++++
T Consensus 171 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 171 RLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999964 789999999874 7889999999999999999999887
Q ss_pred HH
Q 004932 335 CL 336 (723)
Q Consensus 335 ~~ 336 (723)
+.
T Consensus 249 ~~ 250 (267)
T PRK14237 249 IF 250 (267)
T ss_pred Hh
Confidence 64
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=340.46 Aligned_cols=214 Identities=26% Similarity=0.377 Sum_probs=184.1
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (723)
+.++|+++.+. . ++|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+... ..+
T Consensus 1 l~~~~l~~~~~-----~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~---G~v~i~g~~~~~~~~~~~ 71 (235)
T cd03299 1 LKVENLSKDWK-----E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDS---GKILLNGKDITNLPPEKR 71 (235)
T ss_pred CeeEeEEEEeC-----C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCEEcCcCChhHc
Confidence 35789999884 1 38999999999999999999999999999999999999875 999999987532 235
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004932 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
.++|++|++.+++.+|+.||+.+...... .......+.+.++++.+||.+..++.+ +.|||||||||+|||||
T Consensus 72 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~laral 144 (235)
T cd03299 72 DISYVPQNYALFPHMTVYKNIAYGLKKRK-VDKKEIERKVLEIAEMLGIDHLLNRKP------ETLSGGEQQRVAIARAL 144 (235)
T ss_pred CEEEEeecCccCCCccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCChhHHhcCc------ccCCHHHHHHHHHHHHH
Confidence 79999999999999999999987643321 111123456788999999988887754 49999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++.++||++++|++|++++.|+.++..
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999764 89999999987 4788899999999999999999877654
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=343.26 Aligned_cols=224 Identities=21% Similarity=0.276 Sum_probs=181.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~--~~~G~I~i~G~~~~~--- 179 (723)
.+.++|+++.|. ++.+|+|+|+.+++||+++|+||||||||||+|+|+|+++|.. ..+|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (252)
T PRK14272 4 LLSAQDVNIYYG-----DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRV 78 (252)
T ss_pred EEEEeeeEEEEC-----CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCcc
Confidence 578999999984 3469999999999999999999999999999999999987631 125999999987531
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004932 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
.++.++|++|++.+++.+|+.||+.+..............+.++++++.+++.+...... +..++.||||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~G~~qr 156 (252)
T PRK14272 79 DPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRL--KTPATGLSGGQQQR 156 (252)
T ss_pred CHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhh--cCCcccCCHHHHHH
Confidence 124699999999999999999999875432211111112345667777777643221111 23456999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|+++|++. ++.++||++++|++|++++.|+++++
T Consensus 157 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 157 LCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999975 689999889874 78889999999999999999998876
Q ss_pred HH
Q 004932 336 LQ 337 (723)
Q Consensus 336 ~~ 337 (723)
.+
T Consensus 235 ~~ 236 (252)
T PRK14272 235 FT 236 (252)
T ss_pred Hh
Confidence 43
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=346.27 Aligned_cols=218 Identities=22% Similarity=0.300 Sum_probs=178.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (723)
.++++|+++.|. ++.+|+|+|+.+++||+++|+|+||||||||+++|+|+.+ +....+|+|.++|++...
T Consensus 21 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 21 ILEVKDLSIYYG-----EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred eEEEEEEEEEeC-----CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 589999999984 3569999999999999999999999999999999999864 210125999999987531
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc----hHhhhhhcCCCCCCCCCHH
Q 004932 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPCG 251 (723)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~~LSGG 251 (723)
..+.++|++|++.+++. |+.||+.+.............++.+.++++.+++. +..++ .+..||||
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~LSgG 168 (268)
T PRK14248 96 NVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHS------SALSLSGG 168 (268)
T ss_pred cHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhc------CcccCCHH
Confidence 13469999999988875 99999987643221111111345577888988885 23333 45699999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004932 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 252 erqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|+
T Consensus 169 q~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~ 246 (268)
T PRK14248 169 QQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNM-QQALRVSDRTAFFLNGDLVEYDQ 246 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999965 68999999987 47889999999999999999999
Q ss_pred hhHHH
Q 004932 332 TLACL 336 (723)
Q Consensus 332 ~~~~~ 336 (723)
++++.
T Consensus 247 ~~~~~ 251 (268)
T PRK14248 247 TEQIF 251 (268)
T ss_pred HHHHH
Confidence 87764
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=343.04 Aligned_cols=222 Identities=21% Similarity=0.271 Sum_probs=180.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~--~~~G~I~i~G~~~~~--- 179 (723)
.++++|+++.|. ++.+|+|+|+.+++||+++|+||||||||||+++|+|+.++.. ..+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 77 (249)
T PRK14253 3 KFNIENLDLFYG-----ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77 (249)
T ss_pred eEEEeccEEEEC-----CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccc
Confidence 478999999984 3569999999999999999999999999999999999987520 125999999987531
Q ss_pred ---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH
Q 004932 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (723)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (723)
.++.++|++|++.+++ .||.||+.+.............++++.++++.+++.+...... +..+.+|||||||||
T Consensus 78 ~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~LS~G~~qrv 154 (249)
T PRK14253 78 VADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRL--KSHAFGLSGGQQQRL 154 (249)
T ss_pred hHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHh--hcCcccCCHHHHHHH
Confidence 1246999999998887 8999999876432211111123456778888888854321111 234569999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 257 ~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 155 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 155 CIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSM-QQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999976 58999999987 4788999999999999999999987653
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=348.70 Aligned_cols=219 Identities=23% Similarity=0.329 Sum_probs=182.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEeCCCC
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-----RMYGEVFVNGAKSEMP 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~-----~~~G~I~i~G~~~~~~ 180 (723)
++++|+++.+. ++.+|+|+|+.+++||+++|+||||||||||+|+|+|+++|+. ..+|+|.++|++....
T Consensus 2 l~~~nl~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~ 76 (272)
T PRK13547 2 LTADHLHVARR-----HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76 (272)
T ss_pred eEEEEEEEEEC-----CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccC
Confidence 68999999884 3469999999999999999999999999999999999998750 0149999999875321
Q ss_pred -----CceEEEEcCCCccCCCCCHHHHHHHHHHhcCC--C-ccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHH
Q 004932 181 -----YGSYGFVERETTLIGSLTVREYLYYSALLQLP--G-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (723)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~--~-~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe 252 (723)
.+.++|++|++.+++.+||+||+.+....... . ...+..++++++++.+||.+..++. +..|||||
T Consensus 77 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~LSgG~ 150 (272)
T PRK13547 77 DAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD------VTTLSGGE 150 (272)
T ss_pred CHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC------cccCCHHH
Confidence 23579999998766679999999775321100 0 0112345688999999998877664 45999999
Q ss_pred HHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEe
Q 004932 253 RRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLS 322 (723)
Q Consensus 253 rqRv~IA~aL~---------~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (723)
||||+|||+|+ .+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++ .++.++||++++|+
T Consensus 151 ~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~~~~~~d~i~~l~ 229 (272)
T PRK13547 151 LARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NLAARHADRIAMLA 229 (272)
T ss_pred HHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEE
Confidence 99999999999 599999999999999999999999999999876 89999999987 47888999999999
Q ss_pred CCeEEEEeChhHHH
Q 004932 323 NGNTLFFGETLACL 336 (723)
Q Consensus 323 ~G~iv~~G~~~~~~ 336 (723)
+|++++.|+++++.
T Consensus 230 ~G~i~~~g~~~~~~ 243 (272)
T PRK13547 230 DGAIVAHGAPADVL 243 (272)
T ss_pred CCeEEEecCHHHHc
Confidence 99999999987763
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=322.67 Aligned_cols=218 Identities=25% Similarity=0.294 Sum_probs=189.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++|+.+.| +...+|++||+..+.|+++.|||.|||||||+|+||+-+..|+. |.|.+||+.+..
T Consensus 6 ~l~v~dlHK~~-----G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~---G~I~v~geei~~k~~~~ 77 (256)
T COG4598 6 ALEVEDLHKRY-----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSA---GSIRVNGEEIRLKRDKD 77 (256)
T ss_pred ceehhHHHhhc-----ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCC---ceEEECCeEEEeeeCCC
Confidence 58899999888 45789999999999999999999999999999999999999975 999999975311
Q ss_pred ------C-------CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCC
Q 004932 180 ------P-------YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246 (723)
Q Consensus 180 ------~-------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 246 (723)
. +.+.++|+|+..|+.++||.||+..+..--+.....+..++.+..|..+|+.+..+. ||.
T Consensus 78 G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~------YP~ 151 (256)
T COG4598 78 GQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADA------YPA 151 (256)
T ss_pred CCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhc------Ccc
Confidence 0 124699999999999999999997654322222222345678889999999888765 666
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004932 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 247 ~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
.|||||+||++|||||+.+|+++++|||||+|||.-.-++++.+++|+++|+|.++++|.. ....+...+|++|++|+|
T Consensus 152 ~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM-~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 152 HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEM-GFARDVSSHVIFLHQGKI 230 (256)
T ss_pred ccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeeh-hHHHhhhhheEEeeccee
Confidence 9999999999999999999999999999999999999999999999999999999999886 578889999999999999
Q ss_pred EEEeChhHHHH
Q 004932 327 LFFGETLACLQ 337 (723)
Q Consensus 327 v~~G~~~~~~~ 337 (723)
-+.|+|++++.
T Consensus 231 EE~G~P~qvf~ 241 (256)
T COG4598 231 EEEGPPEQVFG 241 (256)
T ss_pred cccCChHHHhc
Confidence 99999998853
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=346.42 Aligned_cols=222 Identities=21% Similarity=0.313 Sum_probs=180.5
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM-- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~--~~~G~I~i~G~~~~~-- 179 (723)
..++++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|++++.. ..+|+|.++|++...
T Consensus 12 ~~l~i~nl~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 12 IIISLQNVTISYG-----TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred ceEEEEeEEEEEC-----CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 3689999999984 3469999999999999999999999999999999999986310 125999999987521
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHH
Q 004932 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (723)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (723)
.++.++|++|++.+++ .||+||+.+.+..+. .....+++++++++.+++....+... +..+..|||||||
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~G~~q 161 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING--YTGDMDELVERSLRKAAVWDECKDKL--NESGYSLSGGQQQ 161 (269)
T ss_pred CCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC--CcHHHHHHHHHHHHHhCCcchhhhhh--CCCcccCCHHHHH
Confidence 1246999999998887 499999987654321 11123456778889888743211111 2355699999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC-----------
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN----------- 323 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~----------- 323 (723)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.++||++++|++
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~~~~~~~~~g~~ 239 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNM-QQAVRVSDMTAFFNAEEVEGGSGGKV 239 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEecccccccccccc
Confidence 99999999999999999999999999999999999999964 78999988887 578899999999996
Q ss_pred CeEEEEeChhHHHH
Q 004932 324 GNTLFFGETLACLQ 337 (723)
Q Consensus 324 G~iv~~G~~~~~~~ 337 (723)
|++++.|+++++.+
T Consensus 240 g~~~~~~~~~~~~~ 253 (269)
T PRK14259 240 GYLVEFNETKKIFN 253 (269)
T ss_pred ceEEEeCCHHHHHh
Confidence 67899999988754
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-40 Score=344.99 Aligned_cols=223 Identities=22% Similarity=0.294 Sum_probs=181.9
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM-- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~--~~~G~I~i~G~~~~~-- 179 (723)
..++++|+++.+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|++++.. ..+|+|.++|.+...
T Consensus 24 ~~l~~~nl~~~~~-----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 24 TALEVRNLNLFYG-----DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred cEEEEEEEEEEEC-----CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence 3689999999984 3469999999999999999999999999999999999987410 135999999987531
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHH
Q 004932 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (723)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (723)
.++.++|++|++.+++. |++||+.+.............+++++++++.+++.+...... +..+..|||||||
T Consensus 99 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~Gq~q 175 (272)
T PRK14236 99 VDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRL--HENAFGLSGGQQQ 175 (272)
T ss_pred cCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHh--hCCcccCCHHHHH
Confidence 13468999999988886 999999876433211111113456888999999864322211 2355699999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|+++|++ .++.++||++++|++|++++.|++++
T Consensus 176 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNM-QQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCH-HHHHhhCCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999999976 68999988887 47888999999999999999999877
Q ss_pred HH
Q 004932 335 CL 336 (723)
Q Consensus 335 ~~ 336 (723)
..
T Consensus 254 ~~ 255 (272)
T PRK14236 254 LF 255 (272)
T ss_pred Hh
Confidence 54
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=343.02 Aligned_cols=224 Identities=22% Similarity=0.303 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~--~~~G~I~i~G~~~~~--- 179 (723)
.++++|+++.|. .+.+|+|+|+.+++||+++|+|+||||||||+++|+|+.+|++ ..+|+|.++|++...
T Consensus 7 ~l~~~nl~~~~~-----~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~ 81 (261)
T PRK14258 7 AIKVNNLSFYYD-----TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81 (261)
T ss_pred eEEEeeEEEEeC-----CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcccc
Confidence 589999999984 2469999999999999999999999999999999999998741 135999999987421
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004932 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
.++.++|++|+..+++ +|+.||+.+...........+.++++.++++.+++.+..+... +..+..||||||||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LSgGq~qr 158 (261)
T PRK14258 82 NLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKI--HKSALDLSGGQQQR 158 (261)
T ss_pred chHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHh--cCCcccCCHHHHHH
Confidence 1246899999988888 8999999876432211011123456788999999865332222 23556999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeC-----CeEEEE
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSN-----GNTLFF 329 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~-----G~iv~~ 329 (723)
++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|+|+++|++ .++.++||+|++|++ |++++.
T Consensus 159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCEEEEEccCCCcCceEEEe
Confidence 9999999999999999999999999999999999999975 589999988887 578899999999999 999999
Q ss_pred eChhHHHH
Q 004932 330 GETLACLQ 337 (723)
Q Consensus 330 G~~~~~~~ 337 (723)
|+++++.+
T Consensus 238 ~~~~~~~~ 245 (261)
T PRK14258 238 GLTKKIFN 245 (261)
T ss_pred CCHHHHHh
Confidence 99988744
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=335.37 Aligned_cols=200 Identities=27% Similarity=0.394 Sum_probs=171.5
Q ss_pred eEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---------C
Q 004932 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---------P 180 (723)
Q Consensus 110 ~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---------~ 180 (723)
||+++|.+ +.+ |+|+++++ |+++|+||||||||||+++|+|+++|++ |+|.++|.+... .
T Consensus 5 ~l~~~~~~-----~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~~~~~ 73 (214)
T cd03297 5 DIEKRLPD-----FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDG---GTIVLNGTVLFDSRKKINLPPQ 73 (214)
T ss_pred eeeEecCC-----eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEecccccchhhhhhH
Confidence 78888842 334 99999999 9999999999999999999999998875 999999986421 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHH
Q 004932 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (723)
++.++|++|++.+++.+|++||+.+..... .....++++.++++.+|+.+..++.+ ..||||||||++|||
T Consensus 74 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~la~ 144 (214)
T cd03297 74 QRKIGLVFQQYALFPHLNVRENLAFGLKRK---RNREDRISVDELLDLLGLDHLLNRYP------AQLSGGEKQRVALAR 144 (214)
T ss_pred hhcEEEEecCCccCCCCCHHHHHHHHHhhC---CHHHHHHHHHHHHHHcCCHhHhhcCc------ccCCHHHHHHHHHHH
Confidence 246999999999999999999998764321 11123456889999999987777644 599999999999999
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 261 aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 145 ALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999865 89999988887 4788899999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=340.95 Aligned_cols=222 Identities=20% Similarity=0.271 Sum_probs=180.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARMYGEVFVNGAKSEM--- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~--~~~~~G~I~i~G~~~~~--- 179 (723)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ....+|+|.++|+++..
T Consensus 6 ~i~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 80 (253)
T PRK14261 6 ILSTKNLNLWYG-----EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA 80 (253)
T ss_pred eEEEeeeEEEEC-----CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccccc
Confidence 589999999884 35799999999999999999999999999999999998753 11125999999987532
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004932 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
..+.++|++|++.+++. ||+||+.+....+........++.+.++++.+++.+...... +..+..||||||||
T Consensus 81 ~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~G~~qr 157 (253)
T PRK14261 81 DVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRL--HDSALSLSGGQQQR 157 (253)
T ss_pred chhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHh--hcChhhCCHHHHHH
Confidence 12468999999988875 999999886543211111123456788899988854221111 23556999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|+++..|+++++
T Consensus 158 v~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 158 LCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNM-QQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCH-HHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999976 58999988987 478889999999999999999998876
Q ss_pred H
Q 004932 336 L 336 (723)
Q Consensus 336 ~ 336 (723)
.
T Consensus 236 ~ 236 (253)
T PRK14261 236 F 236 (253)
T ss_pred H
Confidence 4
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=341.02 Aligned_cols=198 Identities=26% Similarity=0.347 Sum_probs=169.1
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CCceEEEEc-CCCccCCC
Q 004932 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PYGSYGFVE-RETTLIGS 196 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----~~~~~~yv~-Q~~~l~~~ 196 (723)
.+++|+|+|+.+++||+++|+||||||||||+++|+|+++|+. |+|.++|++... ..+.++|++ |++.+++.
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTS---GEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 4579999999999999999999999999999999999998875 999999986421 124689997 55778889
Q ss_pred CCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 004932 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (723)
Q Consensus 197 lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTs 276 (723)
+|++|++.+....... ...+..++++++++.+||.+..++.+. .||||||||++||++|+.+|++|||||||+
T Consensus 110 ~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~~~------~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 110 LPVIDSFYLLAAIYDL-PPARFKKRLDELSELLDLEELLDTPVR------QLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred CcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhHhcCChh------hCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 9999999876543211 111234567889999999888877554 899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 277 HLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|
T Consensus 183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999864 88999999987 4788999999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=316.90 Aligned_cols=211 Identities=28% Similarity=0.324 Sum_probs=184.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~------ 178 (723)
.++++++++++... .....||++|++.+++||.+||+|||||||||||-+++|+..|++ |+|.+.|++..
T Consensus 6 ii~~~~l~ktvg~~-~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ss---GeV~l~G~~L~~ldEd~ 81 (228)
T COG4181 6 IIEVHHLSKTVGQG-EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSS---GEVRLLGQPLHKLDEDA 81 (228)
T ss_pred eeehhhhhhhhcCC-CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCC---ceEEEcCcchhhcCHHH
Confidence 57889999988543 245679999999999999999999999999999999999999985 99999998742
Q ss_pred ---CCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004932 179 ---MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 179 ---~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
...+++|||+|...+.|+||..||+..++.++-.. ..+......+.|+.+||.+..+. +|.+|||||+||
T Consensus 82 rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~-~~~~~~~A~~lL~~vGLg~Rl~H------yP~qLSGGEQQR 154 (228)
T COG4181 82 RAALRARHVGFVFQSFHLIPNLTALENVALPLELRGES-SADSRAGAKALLEAVGLGKRLTH------YPAQLSGGEQQR 154 (228)
T ss_pred HHHhhccceeEEEEeeeccccchhhhhccchhhhcCCc-cccHHHHHHHHHHHhCccccccc------CccccCchHHHH
Confidence 12357999999999999999999999988776422 12345568899999999887765 666999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (723)
|+||||++..|+|||.||||-+||..+..+|.++|-.+. +.|.|.|+++|+| .+..-|||.+-|.+|+++.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeeecceecc
Confidence 999999999999999999999999999999999999998 4689999999997 4677899999999999974
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=345.55 Aligned_cols=219 Identities=20% Similarity=0.223 Sum_probs=184.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++||++.|.+. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|+. |+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~~--~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~i~~~~~~~ 78 (277)
T PRK13642 4 ILEVENLVFKYEKE--SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFE---GKVKIDGELLTAENVWN 78 (277)
T ss_pred eEEEEEEEEEcCCC--CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---CEEEECCEECCcCCHHH
Confidence 58899999998521 12459999999999999999999999999999999999999875 999999987532
Q ss_pred CCceEEEEcCCCc-cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 180 PYGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 180 ~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
..+.++|++|++. .++..||.||+.+...... .......++++++++.+||.+..++.+ ..||||||||++|
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~l 151 (277)
T PRK13642 79 LRRKIGMVFQNPDNQFVGATVEDDVAFGMENQG-IPREEMIKRVDEALLAVNMLDFKTREP------ARLSGGQKQRVAV 151 (277)
T ss_pred HhcceEEEEECHHHhhccCCHHHHHHhhHHHcC-CCHHHHHHHHHHHHHHCCCHhHhhCCc------ccCCHHHHHHHHH
Confidence 1346999999974 5667899999987643221 111123456889999999988877644 5999999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++. ++. .||++++|++|++++.|+++++..
T Consensus 152 AraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 152 AGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EAA-SSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999875 999999999875 554 699999999999999999988753
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=340.23 Aligned_cols=223 Identities=21% Similarity=0.277 Sum_probs=179.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (723)
.++++||++.+. .+.+|+|+|+.+++||+++|+|+||||||||+++|+|+.+ |+...+|+|.++|++...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14255 5 IITSSDVHLFYG-----KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNE 79 (252)
T ss_pred eEEEEeEEEEEC-----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccc
Confidence 589999999984 3469999999999999999999999999999999999865 321125999999986521
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004932 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
..+.++|++|++.+++ .||+||+.+....+........++++.+.++.+++........ +..+.+||||||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~--~~~~~~LS~Gq~qr 156 (252)
T PRK14255 80 DVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHL--HESALSLSGGQQQR 156 (252)
T ss_pred cHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHH--hcCcccCCHHHHHH
Confidence 1346999999998887 6999999876543211111112345677888887742211111 23456999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|+++|++ .++.++||+|++|++|+++..|++.+.
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 157 VCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSM-HQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999976 58999988887 478899999999999999999998876
Q ss_pred HH
Q 004932 336 LQ 337 (723)
Q Consensus 336 ~~ 337 (723)
..
T Consensus 235 ~~ 236 (252)
T PRK14255 235 FL 236 (252)
T ss_pred hc
Confidence 43
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=346.64 Aligned_cols=221 Identities=23% Similarity=0.295 Sum_probs=180.1
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC-
Q 004932 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM- 179 (723)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~--~~~~~~G~I~i~G~~~~~- 179 (723)
...+.++|+++.|. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+.+ |....+|+|.++|+++..
T Consensus 37 ~~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~ 111 (286)
T PRK14275 37 KPHVVAKNFSIYYG-----EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK 111 (286)
T ss_pred ceEEEEeeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhc
Confidence 34689999999984 2469999999999999999999999999999999999854 300024999999986421
Q ss_pred ------CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc----hHhhhhhcCCCCCCCCC
Q 004932 180 ------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLP 249 (723)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~~LS 249 (723)
.++.++|++|++.+++. ||.||+.+.............++++.++++.+++. +..++ .+..||
T Consensus 112 ~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~------~~~~LS 184 (286)
T PRK14275 112 FTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDK------NALGLS 184 (286)
T ss_pred ccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhC------ChhhCC
Confidence 13469999999988875 99999988653321111112345677888998874 33333 456999
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 004932 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (723)
Q Consensus 250 GGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (723)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.
T Consensus 185 gGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~-~~~~~~~d~i~~L~~G~i~~~ 262 (286)
T PRK14275 185 GGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNM-QQASRVSDYTMFFYEGVLVEH 262 (286)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999975 58999988887 478889999999999999999
Q ss_pred eChhHHHH
Q 004932 330 GETLACLQ 337 (723)
Q Consensus 330 G~~~~~~~ 337 (723)
|+++++.+
T Consensus 263 g~~~~~~~ 270 (286)
T PRK14275 263 APTAQLFT 270 (286)
T ss_pred CCHHHHHh
Confidence 99887643
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=343.30 Aligned_cols=222 Identities=22% Similarity=0.291 Sum_probs=181.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCC--ceeEEEECCEeCCC---
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR--MYGEVFVNGAKSEM--- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~--~~G~I~i~G~~~~~--- 179 (723)
.++++|+++.|. ++.+|+|+|+++++||+++|+|+||||||||+|+|+|+++++.. .+|+|.++|++...
T Consensus 7 ~l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (259)
T PRK14260 7 AIKVKDLSFYYN-----TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI 81 (259)
T ss_pred eEEEEEEEEEEC-----CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccccc
Confidence 589999999984 34699999999999999999999999999999999999875311 35999999986521
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004932 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
..+.++|++|++.+++ +||+||+.+....+........+++++++++.+++.+...... +..+..||||||||
T Consensus 82 ~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~G~~qr 158 (259)
T PRK14260 82 NINRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKL--NKSALGLSGGQQQR 158 (259)
T ss_pred chHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHh--cCCcccCCHHHHHH
Confidence 1246999999998887 8999999876543211111123456788899999853221111 23566999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe-----CCeEEEEe
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS-----NGNTLFFG 330 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~-----~G~iv~~G 330 (723)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|+ +|++++.|
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 159 LCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNM-QQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999975 58999999987 58889999999998 59999999
Q ss_pred ChhHHH
Q 004932 331 ETLACL 336 (723)
Q Consensus 331 ~~~~~~ 336 (723)
+++++.
T Consensus 237 ~~~~~~ 242 (259)
T PRK14260 237 VTTQIF 242 (259)
T ss_pred CHHHHh
Confidence 998864
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=340.23 Aligned_cols=218 Identities=22% Similarity=0.288 Sum_probs=179.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (723)
.++++|+++.|+ .+.+|+|+|+.+++||+++|+|+||||||||+|+|+|+.+ |....+|+|.++|++...
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~ 78 (251)
T PRK14251 4 IISAKDVHLSYG-----NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78 (251)
T ss_pred eEEEEeeEEEEC-----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence 478999999984 3469999999999999999999999999999999999986 210135999999987521
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc----hHhhhhhcCCCCCCCCCHH
Q 004932 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPCG 251 (723)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ig~~~~~~~LSGG 251 (723)
.++.++|++|++.+++ .||+||+.+.............+++++++++.+++. +..++ .+.+||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~LS~G 151 (251)
T PRK14251 79 DLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDR------NAQAFSGG 151 (251)
T ss_pred hHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhcc------ChhhCCHH
Confidence 1346999999998886 799999987643221111111335678889999984 23333 45699999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004932 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 252 erqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.++||++++|++|+++..|+
T Consensus 152 q~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~ 229 (251)
T PRK14251 152 QQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNL-QQAGRISDQTAFLMNGDLIEAGP 229 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCH-HHHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999964 68999989987 47888999999999999999999
Q ss_pred hhHHH
Q 004932 332 TLACL 336 (723)
Q Consensus 332 ~~~~~ 336 (723)
++++.
T Consensus 230 ~~~~~ 234 (251)
T PRK14251 230 TEEMF 234 (251)
T ss_pred HHHHH
Confidence 88764
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=340.32 Aligned_cols=216 Identities=18% Similarity=0.225 Sum_probs=180.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEeCCC---C
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-RMYGEVFVNGAKSEM---P 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~-~~~G~I~i~G~~~~~---~ 180 (723)
.++++|+++.+ + +.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|.. ..+|+|.++|+++.. .
T Consensus 4 ~l~~~~l~~~~-~-----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A-----QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALR 77 (254)
T ss_pred EEEEeCeEEEe-c-----cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccc
Confidence 58999999988 1 369999999999999999999999999999999999998710 024999999987532 1
Q ss_pred CceEEEEcCCCc--cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch---HhhhhhcCCCCCCCCCHHHHHH
Q 004932 181 YGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD---YANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 181 ~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~ig~~~~~~~LSGGerqR 255 (723)
.+.++|++|++. +.+.+|+.+++.+.+.... . ...++++.++++.++|.+ ..++ .+.+||||||||
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~l~~~~l~~~~~~~~~------~~~~LS~Gq~qr 148 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALG-K--PADDATLTAALEAVGLENAARVLKL------YPFEMSGGMLQR 148 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcC-C--ChHHHHHHHHHHHcCCCChhhhhhc------CCcccCHHHHHH
Confidence 246999999974 5567899999876543211 1 123467889999999976 3444 445999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++ .++.++||++++|++|++++.|++++
T Consensus 149 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 227 (254)
T PRK10418 149 MMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAVMSHGRIVEQGDVET 227 (254)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999764 89999999987 46788999999999999999999887
Q ss_pred HH
Q 004932 335 CL 336 (723)
Q Consensus 335 ~~ 336 (723)
+.
T Consensus 228 ~~ 229 (254)
T PRK10418 228 LF 229 (254)
T ss_pred Hh
Confidence 64
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=340.59 Aligned_cols=217 Identities=22% Similarity=0.283 Sum_probs=179.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-----CCC
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-----SEM 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~-----~~~ 179 (723)
.++++|+++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|++ ...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 3 LLQVSGLSKSYG-----GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDH---GTATYIMRSGAELELYQ 74 (253)
T ss_pred eEEEeeeEEEeC-----CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEEeccccccccccc
Confidence 588999999984 3468999999999999999999999999999999999998874 999999865 321
Q ss_pred -C--------CceEEEEcCCCc--cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCC
Q 004932 180 -P--------YGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKG 247 (723)
Q Consensus 180 -~--------~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~ 247 (723)
. .+.++|++|++. +.+.+|+.||+.+.............++.++++++.+++. +..++. ++.
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~------~~~ 148 (253)
T TIGR02323 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDL------PRA 148 (253)
T ss_pred CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcC------chh
Confidence 1 135899999974 4566799999865432111001112346788999999996 466664 459
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004932 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 248 LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|+|+++|++ .++.++||++++|++|++
T Consensus 149 LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~-~~~~~~~d~~~~l~~G~i 227 (253)
T TIGR02323 149 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL-GVARLLAQRLLVMQQGRV 227 (253)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999875 489999988887 578889999999999999
Q ss_pred EEEeChhHHH
Q 004932 327 LFFGETLACL 336 (723)
Q Consensus 327 v~~G~~~~~~ 336 (723)
++.|+++++.
T Consensus 228 ~~~~~~~~~~ 237 (253)
T TIGR02323 228 VESGLTDQVL 237 (253)
T ss_pred EEECCHHHHh
Confidence 9999987764
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=344.02 Aligned_cols=223 Identities=19% Similarity=0.229 Sum_probs=182.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM--- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~--~~~~G~I~i~G~~~~~--- 179 (723)
.+.++||++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|. ...+|+|.++|.++..
T Consensus 21 ~l~i~nl~~~~~-----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~ 95 (276)
T PRK14271 21 AMAAVNLTLGFA-----GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95 (276)
T ss_pred EEEEeeEEEEEC-----CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccch
Confidence 689999999994 357999999999999999999999999999999999998752 0135999999987531
Q ss_pred ---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH
Q 004932 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (723)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (723)
.++.++|++|++.+++ .|++||+.+...........+.++++.++++.+++.+..+... +..+..||||||||+
T Consensus 96 ~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l--~~~~~~LSgGq~qrl 172 (276)
T PRK14271 96 VLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRL--SDSPFRLSGGQQQLL 172 (276)
T ss_pred hHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHh--hCCcccCCHHHHHHH
Confidence 1346899999998887 8999999876432211111123345678899999975432221 234569999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 257 ~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNL-AQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999976 48999988887 4788999999999999999999988764
Q ss_pred H
Q 004932 337 Q 337 (723)
Q Consensus 337 ~ 337 (723)
+
T Consensus 251 ~ 251 (276)
T PRK14271 251 S 251 (276)
T ss_pred h
Confidence 3
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=340.65 Aligned_cols=221 Identities=19% Similarity=0.287 Sum_probs=179.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC----
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~--~~~~~~G~I~i~G~~~~~---- 179 (723)
-+++|+++.+. ++.+|+|+|+.+++||+++|+|+||||||||+++|+|+.+ |....+|+|.++|+++..
T Consensus 6 ~~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 80 (251)
T PRK14244 6 ASVKNLNLWYG-----SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTN 80 (251)
T ss_pred EEeeeEEEEEC-----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccc
Confidence 47899999884 3579999999999999999999999999999999999975 210125999999986421
Q ss_pred ---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-CccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004932 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
.++.++|++|++.+++. ||.||+.+....+.. ......++.+.++++.+||.+...+.. +..+.+||||||||
T Consensus 81 ~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~Gq~qr 157 (251)
T PRK14244 81 VVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRL--KDSAFELSGGQQQR 157 (251)
T ss_pred hHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHh--hcChhhCCHHHHHH
Confidence 13468999999988875 999999876433211 111123456788999999975322211 22456999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|++. ++.++||++++|++|++++.|+++++
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999964 899999999874 78889999999999999999998776
Q ss_pred H
Q 004932 336 L 336 (723)
Q Consensus 336 ~ 336 (723)
.
T Consensus 236 ~ 236 (251)
T PRK14244 236 F 236 (251)
T ss_pred h
Confidence 4
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=376.92 Aligned_cols=218 Identities=20% Similarity=0.331 Sum_probs=186.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++|+++.|. ++.+|+|||+++++||+++|+||||||||||+|+|+|+++|+ ..+|+|.++|++....
T Consensus 5 ~l~~~nl~~~~~-----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~ 78 (506)
T PRK13549 5 LLEMKNITKTFG-----GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRD 78 (506)
T ss_pred eEEEeeeEEEeC-----CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHH
Confidence 589999999984 346999999999999999999999999999999999999862 1249999999875321
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcC-CC-ccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH
Q 004932 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQL-PG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-~~-~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (723)
++.++|++|++.+++.+||+||+.+....+. .. ......++++++++.+|+.+..++.++ +|||||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgGqkqrv 152 (506)
T PRK13549 79 TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVG------NLGLGQQQLV 152 (506)
T ss_pred HHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchh------hCCHHHHHHH
Confidence 2459999999999999999999987643221 10 111234568899999999877777554 9999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 257 ~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++
T Consensus 153 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 153 EIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccccC
Confidence 999999999999999999999999999999999999988899999988886 578889999999999999999988764
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=376.73 Aligned_cols=216 Identities=20% Similarity=0.356 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++|+++.|. ++.+|+|+|+++.+||+++|+||||||||||||+|+|+++|+. |+|.++|++....
T Consensus 4 ~i~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 4 LLQLKGIDKAFP-----GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDA---GSILYLGKEVTFNGPKS 75 (501)
T ss_pred eEEEeeeEEEeC-----CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHHH
Confidence 489999999984 3569999999999999999999999999999999999998875 9999999875321
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcC--CC-ccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004932 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQL--PG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~--~~-~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
.+.++|++|++.+++.+||+||+.++..... .. ...+.+++++++++.+||.+..++.++ +||||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG~~qr 149 (501)
T PRK10762 76 SQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG------ELSIGEQQM 149 (501)
T ss_pred HHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh------hCCHHHHHH
Confidence 2469999999999999999999987643210 11 111234568899999999887777554 999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||+|++|++|+++..|+++++
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 9999999999999999999999999999999999999988899999988887 578899999999999999999987664
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=337.15 Aligned_cols=201 Identities=22% Similarity=0.267 Sum_probs=170.5
Q ss_pred eeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC----CCCceeEEEECCEeCCC---CCceEEEEcCCCc--cCC
Q 004932 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH----SARMYGEVFVNGAKSEM---PYGSYGFVERETT--LIG 195 (723)
Q Consensus 125 iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~----~~~~~G~I~i~G~~~~~---~~~~~~yv~Q~~~--l~~ 195 (723)
+|+|+|+++++||+++|+||||||||||+|+|+|+.+| + +|+|.++|++... ..+.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57899999999999999999999999999999999987 5 4999999987532 1246999999974 567
Q ss_pred CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc---hHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 004932 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS---DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFID 272 (723)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLD 272 (723)
.+|+.|++.+....... .....+++++++++.+++. +..++. +..|||||||||+|||||+.+|++||||
T Consensus 78 ~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGK-LSKQARALILEALEAVGLPDPEEVLKKY------PFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred ccCHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHcCCCchHHHHhCC------hhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 78999999765432211 1112346689999999997 455554 4599999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 273 EPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 273 EPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
|||+|||+.++..+.+.|++++++ |+|||+++|++ +++..+||++++|++|+++..|+++++.
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDL-GVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999864 89999988887 4788899999999999999999987764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=383.60 Aligned_cols=218 Identities=22% Similarity=0.345 Sum_probs=187.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (723)
..++++||++.|.. .+..+|+|+|++++|||.+||+|+||||||||+|+|+|+++|.. |+|++||.+...
T Consensus 470 g~I~~~nvsf~y~~---~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~---G~I~~dg~dl~~i~~~ 543 (709)
T COG2274 470 GEIEFENVSFRYGP---DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ---GRILLDGVDLNDIDLA 543 (709)
T ss_pred ceEEEEEEEEEeCC---CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEeHHhcCHH
Confidence 46999999999963 23469999999999999999999999999999999999999975 999999998532
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHH
Q 004932 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (723)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGer 253 (723)
.++++|||+|++.+|. -|++||+.++ .|. ...+.+.++++..|..+.....+.|.+ ...+||||||
T Consensus 544 ~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~----~p~---~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQr 615 (709)
T COG2274 544 SLRRQVGYVLQDPFLFS-GSIRENIALG----NPE---ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQR 615 (709)
T ss_pred HHHhheeEEcccchhhc-CcHHHHHhcC----CCC---CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHH
Confidence 2468999999999985 5999999753 222 245667888888888877766554443 3457999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||++|||||+++|+||+||||||+||+.+++.|.+.|+++.. |+|+|+++|.++ ..+.||||+||++||++++|+.+
T Consensus 616 QrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti~~adrIiVl~~Gkiv~~gs~~ 692 (709)
T COG2274 616 QRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TIRSADRIIVLDQGKIVEQGSHE 692 (709)
T ss_pred HHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch--HhhhccEEEEccCCceeccCCHH
Confidence 999999999999999999999999999999999999999874 689999999984 57889999999999999999999
Q ss_pred HHHHH
Q 004932 334 ACLQH 338 (723)
Q Consensus 334 ~~~~~ 338 (723)
++...
T Consensus 693 ell~~ 697 (709)
T COG2274 693 ELLAQ 697 (709)
T ss_pred HHHHh
Confidence 88753
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=350.69 Aligned_cols=226 Identities=19% Similarity=0.235 Sum_probs=184.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~--~~~~G~I~i~G~~~~~-- 179 (723)
..++++|+++.|.. ..+.+|+|+|+.+++||++||+|+||||||||+++|+|+.++. ...+|+|.++|+++..
T Consensus 79 ~~i~~~nls~~y~~---~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 79 NVFEIRNFNFWYMN---RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred ceEEEEeeEEEecC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 46899999999953 2346999999999999999999999999999999999998631 0125999999998631
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHH
Q 004932 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (723)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (723)
.++.++|++|++.+++ .|++||+.|+............++.++++++.++|.+..+..+ +..+..|||||||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~--~~~~~~LSgGqkq 232 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDL--DKAGNALSGGQQQ 232 (329)
T ss_pred cchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhh--hCCcccCCHHHHH
Confidence 2356999999998885 7999999886432211111112344678899998854433333 2456799999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
||+|||||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|+|+++|++ ..+.++||||++|++|++++.|++++
T Consensus 233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l-~~i~~~~Driivl~~G~i~e~g~~~~ 310 (329)
T PRK14257 233 RLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSM-AQAQRISDETVFFYQGWIEEAGETKT 310 (329)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999876 68999999987 47888999999999999999999998
Q ss_pred HHH
Q 004932 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
+.+
T Consensus 311 l~~ 313 (329)
T PRK14257 311 IFI 313 (329)
T ss_pred Hhc
Confidence 753
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=315.94 Aligned_cols=215 Identities=28% Similarity=0.374 Sum_probs=189.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (723)
.+..++++.+|.++ ...+|+|+|+.+.+||.++++||||||||||||+++|+.+|.. |+|.+||++++-+-..-
T Consensus 3 ~l~~~~~sl~y~g~---~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~---G~i~l~~r~i~gPgaer 76 (259)
T COG4525 3 MLNVSHLSLSYEGK---PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSR---GSIQLNGRRIEGPGAER 76 (259)
T ss_pred eeehhheEEecCCc---chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCccc---ceEEECCEeccCCCccc
Confidence 46778899999643 2569999999999999999999999999999999999999975 99999999887665567
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 004932 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (723)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~ 264 (723)
|.|+|++.++|.+||.||+.|+.+++--. ...+.+++.+.+..+||++..++.+ .+|||||||||.|||||+.
T Consensus 77 gvVFQ~~~LlPWl~~~dNvafgL~l~Gi~-k~~R~~~a~q~l~~VgL~~~~~~~i------~qLSGGmrQRvGiARALa~ 149 (259)
T COG4525 77 GVVFQNEALLPWLNVIDNVAFGLQLRGIE-KAQRREIAHQMLALVGLEGAEHKYI------WQLSGGMRQRVGIARALAV 149 (259)
T ss_pred eeEeccCccchhhHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhCcccccccce------EeecchHHHHHHHHHHhhc
Confidence 99999999999999999999998776322 1236778899999999999887754 5999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEe--CCeEEEEeChh
Q 004932 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLS--NGNTLFFGETL 333 (723)
Q Consensus 265 ~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~--~G~iv~~G~~~ 333 (723)
+|++|+||||+++||.-+++++.++|-++. +.|+.+++++|.. ++..-+++|++||+ .|||+..-+++
T Consensus 150 eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~i-eEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 150 EPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDI-EEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred CcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999999999999999999999986 5799999988876 57778999999998 58999877765
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=342.89 Aligned_cols=222 Identities=23% Similarity=0.236 Sum_probs=183.8
Q ss_pred eEEEEeEEEEEecc----cccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 004932 105 SVVWKDLTVTIKGK----RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~----~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~- 179 (723)
.++++||++.|... +..++.+|+|+|+.+++||+++|+||||||||||+++|+|+.+|++ |+|.++|++...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~s---G~i~~~g~~~~~~ 79 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ---GNVSWRGEPLAKL 79 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEecccc
Confidence 47899999998520 0013579999999999999999999999999999999999998864 999999986431
Q ss_pred -------CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCC
Q 004932 180 -------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLP 249 (723)
Q Consensus 180 -------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LS 249 (723)
..+.++|++|+. .+++..|+.|++.+...............+++++++.+|+. +..++. +..||
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~~LS 153 (268)
T PRK10419 80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKR------PPQLS 153 (268)
T ss_pred ChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCC------CccCC
Confidence 124699999997 46778999999876532111111112345789999999996 566664 45999
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 004932 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (723)
Q Consensus 250 GGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (723)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|+++|++ .++.++||++++|++|++++
T Consensus 154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999999865 89999998987 47888999999999999999
Q ss_pred EeChhHHH
Q 004932 329 FGETLACL 336 (723)
Q Consensus 329 ~G~~~~~~ 336 (723)
.|+++++.
T Consensus 233 ~g~~~~~~ 240 (268)
T PRK10419 233 TQPVGDKL 240 (268)
T ss_pred eCChhhcc
Confidence 99988754
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=342.08 Aligned_cols=222 Identities=19% Similarity=0.274 Sum_probs=178.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (723)
.++++|+++.|. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++ |....+|+|.++|++...
T Consensus 24 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 24 VFDTQNLNLWYG-----EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred EEEEeeeEEEEC-----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 589999999984 3469999999999999999999999999999999999986 211135999999987521
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004932 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
..+.++|++|++.+++ .||.||+.+.............++.+.++++.+++.+...... +..+.+||||||||
T Consensus 99 ~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~~LSgGe~qr 175 (271)
T PRK14238 99 SVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRL--HDNAYGLSGGQQQR 175 (271)
T ss_pred cHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHH--hcCcccCCHHHHHH
Confidence 1346999999998887 4999999876533211111112345677777776532111111 23556999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|++++.|+++++
T Consensus 176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNM-QQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999976 68999988887 478889999999999999999998776
Q ss_pred H
Q 004932 336 L 336 (723)
Q Consensus 336 ~ 336 (723)
.
T Consensus 254 ~ 254 (271)
T PRK14238 254 F 254 (271)
T ss_pred H
Confidence 3
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=343.00 Aligned_cols=222 Identities=21% Similarity=0.281 Sum_probs=179.7
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC-
Q 004932 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM- 179 (723)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~--~~~G~I~i~G~~~~~- 179 (723)
...++++||++.|. ++.+|+|+|+.+++||+++|+||||||||||+++|+|++++.. ..+|+|.++|++...
T Consensus 37 ~~~l~i~~l~~~~~-----~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~ 111 (285)
T PRK14254 37 ETVIEARDLNVFYG-----DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDA 111 (285)
T ss_pred CceEEEEEEEEEEC-----CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 34689999999984 3469999999999999999999999999999999999986310 124999999987421
Q ss_pred ------CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHH
Q 004932 180 ------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253 (723)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGer 253 (723)
.++.++|++|+..+++. ||.||+.+....... . ...+++++++++.++|.+...... +..+.+||||||
T Consensus 112 ~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~-~-~~~~~~~~~~l~~~~l~~~i~~~~--~~~~~~LSgGe~ 186 (285)
T PRK14254 112 DVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGY-D-GDIDERVEESLRRAALWDEVKDQL--DSSGLDLSGGQQ 186 (285)
T ss_pred ccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCC-c-HHHHHHHHHHHHHcCCCchhHHHH--hCCcccCCHHHH
Confidence 13469999999988875 999999876543211 1 123456889999999853211111 224569999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEE-EEeCCeEEEEeCh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC-LLSNGNTLFFGET 332 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~-vL~~G~iv~~G~~ 332 (723)
|||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ .|||+++|++ .++.++|||++ +|++|++++.|++
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~-~~i~~~~dri~v~l~~G~i~~~g~~ 264 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNM-QQAARISDKTAVFLTGGELVEFDDT 264 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCH-HHHHhhcCEEEEEeeCCEEEEeCCH
Confidence 9999999999999999999999999999999999999999864 7999988887 47888999975 5799999999998
Q ss_pred hHHH
Q 004932 333 LACL 336 (723)
Q Consensus 333 ~~~~ 336 (723)
+++.
T Consensus 265 ~~~~ 268 (285)
T PRK14254 265 DKIF 268 (285)
T ss_pred HHHH
Confidence 7753
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=379.78 Aligned_cols=223 Identities=21% Similarity=0.223 Sum_probs=188.0
Q ss_pred ceEEEEeEEEEEeccc------ccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 004932 104 ASVVWKDLTVTIKGKR------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~------~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~ 177 (723)
..++++||++.|.... ...+.+|+||||.+++||+++|+|+||||||||+|+|+|+++|++ |+|.++|+++
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~---G~I~~~g~~i 388 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQG---GEIIFNGQRI 388 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---cEEEECCEEC
Confidence 3689999999985210 012469999999999999999999999999999999999998875 9999999865
Q ss_pred CC--------CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCC
Q 004932 178 EM--------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMK 246 (723)
Q Consensus 178 ~~--------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~ 246 (723)
.. .++.++||+|++ .+++.+||.|++.+...........+.++++.++++.+||. +..++. ++
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~------~~ 462 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRY------PH 462 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCC------cc
Confidence 31 124699999996 58899999999987654321101112446788999999996 566664 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 004932 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (723)
Q Consensus 247 ~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (723)
+|||||||||+|||||+.+|++|||||||+|||+.++.+++++|++++++ |.|||+++|+. ..+.++||||++|++|+
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl-~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM-AVVERISHRVAVMYLGQ 541 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999865 89999988886 57889999999999999
Q ss_pred EEEEeChhHHH
Q 004932 326 TLFFGETLACL 336 (723)
Q Consensus 326 iv~~G~~~~~~ 336 (723)
+++.|++++++
T Consensus 542 iv~~g~~~~i~ 552 (623)
T PRK10261 542 IVEIGPRRAVF 552 (623)
T ss_pred EEEecCHHHHh
Confidence 99999998875
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-40 Score=374.01 Aligned_cols=212 Identities=21% Similarity=0.318 Sum_probs=186.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++||++.|. ++.+|+|+|+.+++||+++|+||||||||||||+|+|+++|+. |+|.++|+++...
T Consensus 11 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 82 (510)
T PRK15439 11 LLCARSISKQYS-----GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDS---GTLEIGGNPCARLTPAK 82 (510)
T ss_pred eEEEEeEEEEeC-----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHHH
Confidence 589999999984 3569999999999999999999999999999999999998875 9999999875321
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
.+.++|++|++.+++.+||+||+.+... . ..+.+++++++++.++|.+..++.++ +|||||||||+|
T Consensus 83 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~--~---~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG~~qrv~l 151 (510)
T PRK15439 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLP--K---RQASMQKMKQLLAALGCQLDLDSSAG------SLEVADRQIVEI 151 (510)
T ss_pred HHhCCEEEEeccCccCCCCcHHHHhhcccc--c---chHHHHHHHHHHHHcCCCccccCChh------hCCHHHHHHHHH
Confidence 1358999999999999999999977431 1 11235678899999999887777554 999999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|++++..
T Consensus 152 a~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 152 LRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKL-PEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred HHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 9999999999999999999999999999999999988899999988887 4788999999999999999999987653
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=331.86 Aligned_cols=209 Identities=28% Similarity=0.403 Sum_probs=177.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (723)
++++|+++.+..+. ..+.+|+|+|+.+++||+++|+|+||||||||+++|+|+++|++ |+|.++|++...
T Consensus 2 l~~~~l~~~~~~~~-~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 2 ISIRNLNHYYGHGS-LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQE---GSLKVLGQELYGASEKEL 77 (220)
T ss_pred EEEEEEEEEccCCC-cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEhHhcCHhHH
Confidence 67899999884311 12579999999999999999999999999999999999998875 999999987531
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004932 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
.++.++|++|++.+++.+|+.||+.+...........+..++++++++.+||.+..++.+ +.||||||||++
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~lS~G~~qrv~ 151 (220)
T TIGR02982 78 VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP------HNLSGGQKQRVA 151 (220)
T ss_pred HHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh------hhCCHHHHHHHH
Confidence 124699999999999999999999886543211111224457899999999988777754 499999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .++|+|+++|++. +.++||++++|++|++
T Consensus 152 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 152 IARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999986 5899999999974 4589999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=336.19 Aligned_cols=215 Identities=25% Similarity=0.354 Sum_probs=171.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (723)
++++|+++.|.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++... .
T Consensus 1 i~~~~l~~~~~~---~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (237)
T cd03252 1 ITFEHVRFRYKP---DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPEN---GRVLVDGHDLALADPAWL 74 (237)
T ss_pred CEEEEEEEecCC---CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECCeehHhcCHHHH
Confidence 368999998842 12469999999999999999999999999999999999998875 999999986432 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHHHHH
Q 004932 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRR 255 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerqR 255 (723)
++.++|++|++.+++ .||.||+.+... .. ....+.+.++..++.+..+....+ +..+.+||||||||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~----~~---~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qr 146 (237)
T cd03252 75 RRQVGVVLQENVLFN-RSIRDNIALADP----GM---SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQR 146 (237)
T ss_pred hhcEEEEcCCchhcc-chHHHHhhccCC----CC---CHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHH
Confidence 346999999988775 699999976321 11 112233444445554443322100 22457999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|++. ++ ..||++++|++|++++.|+++++
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~~~~~~~ 223 (237)
T cd03252 147 IAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEKGRIVEQGSHDEL 223 (237)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999974 899999999985 55 46999999999999999998876
Q ss_pred HH
Q 004932 336 LQ 337 (723)
Q Consensus 336 ~~ 337 (723)
.+
T Consensus 224 ~~ 225 (237)
T cd03252 224 LA 225 (237)
T ss_pred Hh
Confidence 54
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-40 Score=361.45 Aligned_cols=216 Identities=25% Similarity=0.349 Sum_probs=185.8
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 004932 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (723)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (723)
+..+..+|+++.|++ ++++++|+|+++++|+.+||+|+||||||||+++|+|+.+|+. |+|.+||.+...
T Consensus 318 ~~ei~~~~l~~~y~~----g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~---G~I~vng~~l~~l~~ 390 (559)
T COG4988 318 PIEISLENLSFRYPD----GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQ---GEIRVNGIDLRDLSP 390 (559)
T ss_pred CceeeecceEEecCC----CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCC---ceEEECCccccccCH
Confidence 345667799999963 3489999999999999999999999999999999999999875 999999987532
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCC-----CCCCCCCHHH
Q 004932 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGE 252 (723)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGe 252 (723)
.+++++||+|++.+++. |++||+.++. + ...++.+.++++..||.+..+. .+|. +..++|||||
T Consensus 391 ~~~~k~i~~v~Q~p~lf~g-TireNi~l~~----~---~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ 461 (559)
T COG4988 391 EAWRKQISWVSQNPYLFAG-TIRENILLAR----P---DASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQ 461 (559)
T ss_pred HHHHhHeeeeCCCCccccc-cHHHHhhccC----C---cCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHH
Confidence 34789999999999875 9999997631 1 1356779999999999887766 3322 3456799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004932 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
+|||++||||+.+++++++||||++||.++++.|++.|.+++++ +|+++++|++. ...-+|+|++|++|++++.|..
T Consensus 462 ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl~--~~~~~D~I~vld~G~l~~~g~~ 538 (559)
T COG4988 462 AQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRLE--DAADADRIVVLDNGRLVEQGTH 538 (559)
T ss_pred HHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcChH--HHhcCCEEEEecCCceeccCCH
Confidence 99999999999999999999999999999999999999999875 89999899874 4567999999999999999999
Q ss_pred hHHHH
Q 004932 333 LACLQ 337 (723)
Q Consensus 333 ~~~~~ 337 (723)
+++.+
T Consensus 539 ~~L~~ 543 (559)
T COG4988 539 EELSE 543 (559)
T ss_pred HHHhh
Confidence 88754
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=373.88 Aligned_cols=216 Identities=19% Similarity=0.332 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++|+++.|. ++.+|+|+||.+++||+++|+||||||||||+|+|+|+.+|+. |+|.++|++....
T Consensus 5 ~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 5 YISMAGIGKSFG-----PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTK---GTITINNINYNKLDHKL 76 (510)
T ss_pred eEEEeeeEEEcC-----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCc---cEEEECCEECCCCCHHH
Confidence 589999999984 3469999999999999999999999999999999999998874 9999999875321
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhc--CCC----ccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHH
Q 004932 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQ--LPG----FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~--~~~----~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe 252 (723)
.+.++|++|++.+++.+||+||+.++.... ... ...+.+++++++++.+||.+..++.++ +|||||
T Consensus 77 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~------~LSgG~ 150 (510)
T PRK09700 77 AAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA------NLSISH 150 (510)
T ss_pred HHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchh------hCCHHH
Confidence 235999999999999999999997653210 001 011234578899999999887777554 999999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004932 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++ .++.++||++++|++|++++.|++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~ 229 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKL-AEIRRICDRYTVMKDGSSVCSGMV 229 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEeeecch
Confidence 9999999999999999999999999999999999999999988899999988876 578899999999999999999998
Q ss_pred hHH
Q 004932 333 LAC 335 (723)
Q Consensus 333 ~~~ 335 (723)
+++
T Consensus 230 ~~~ 232 (510)
T PRK09700 230 SDV 232 (510)
T ss_pred hhC
Confidence 764
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=329.77 Aligned_cols=197 Identities=24% Similarity=0.306 Sum_probs=167.8
Q ss_pred EEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---C-----
Q 004932 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---M----- 179 (723)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~---~----- 179 (723)
++|+++.+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|+++|+. |+|.++|++.. .
T Consensus 1 i~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~~~ 72 (206)
T TIGR03608 1 LKNISKKFG-----DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDS---GQVYLNGKETPPLNSKKASK 72 (206)
T ss_pred CcceEEEEC-----CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEccccchhhHHH
Confidence 368888884 3469999999999999999999999999999999999998875 99999998732 1
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
..+.++|++|++.+++.+|++||+.+...... .......++++++++.+||.+..++.+ ++||||||||++|
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~lS~G~~qr~~l 145 (206)
T TIGR03608 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKK-LSKKEKREKKKEALEKVGLNLKLKQKI------YELSGGEQQRVAL 145 (206)
T ss_pred HHHhCeeEEecchhhccCCcHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCchhhhcCCh------hhCCHHHHHHHHH
Confidence 12469999999999999999999988654321 111124567889999999988877754 4999999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (723)
||||+.+|++|||||||+|||+.++..+.+.|+++.++|.|+|+++|++. . .+.||++++|
T Consensus 146 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~-~~~~d~i~~l 206 (206)
T TIGR03608 146 ARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE-V-AKQADRVIEL 206 (206)
T ss_pred HHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-H-HhhcCEEEeC
Confidence 99999999999999999999999999999999999877999999999974 4 4689999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=335.36 Aligned_cols=217 Identities=17% Similarity=0.254 Sum_probs=178.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEeCCC---
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR--LPHSARMYGEVFVNGAKSEM--- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~--~~~~~~~~G~I~i~G~~~~~--- 179 (723)
.++++||++.+. ++.+|+|||+++++||+++|+|+||||||||+++|+|+ ++|. +|+|.++|.+...
T Consensus 7 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 7 ILEIKNLHASVN-----ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL---EGDILFKGESILDLEP 78 (252)
T ss_pred eEEEEeEEEEeC-----CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCC---CceEEECCEEcccCCh
Confidence 589999999984 24699999999999999999999999999999999998 4565 4999999987532
Q ss_pred --CCc-eEEEEcCCCccCCCCCHHHHHHHHHHhcCC----Cccc--hHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCC
Q 004932 180 --PYG-SYGFVERETTLIGSLTVREYLYYSALLQLP----GFFC--QRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLP 249 (723)
Q Consensus 180 --~~~-~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~----~~~~--~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LS 249 (723)
..+ .++|++|++.+++.+|+.|++.+....... .... +..+++.++++.+++. +..++.++ .+||
T Consensus 79 ~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~LS 153 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN-----EGFS 153 (252)
T ss_pred hhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc-----cCCC
Confidence 112 478999999999999999999765432110 0001 1235678899999997 45555432 2599
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhc-CCEEEEEeCCeEEE
Q 004932 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLF 328 (723)
Q Consensus 250 GGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv~ 328 (723)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+... ||++++|++|++++
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~G~i~~ 232 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQNGKIIK 232 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999878999999999874 56665 89999999999999
Q ss_pred EeChhHH
Q 004932 329 FGETLAC 335 (723)
Q Consensus 329 ~G~~~~~ 335 (723)
.|+++.+
T Consensus 233 ~~~~~~~ 239 (252)
T CHL00131 233 TGDAELA 239 (252)
T ss_pred ecChhhh
Confidence 9998743
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=339.76 Aligned_cols=222 Identities=18% Similarity=0.226 Sum_probs=180.4
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC-
Q 004932 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM- 179 (723)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~--~~~~G~I~i~G~~~~~- 179 (723)
...+.++||++.+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|+.++. ...+|+|.++|++...
T Consensus 18 ~~~l~~~nl~~~~~-----~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~ 92 (274)
T PRK14265 18 HSVFEVEGVKVFYG-----GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDS 92 (274)
T ss_pred CceEEEeeEEEEeC-----CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccc
Confidence 34689999999984 346999999999999999999999999999999999997531 0125999999987521
Q ss_pred ------CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHH
Q 004932 180 ------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253 (723)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGer 253 (723)
.++.++|++|+..+++. ||.||+.+....+. .....++.++++++.+++.+...... +..+..||||||
T Consensus 93 ~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LSgGq~ 167 (274)
T PRK14265 93 QINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG--YKGNLDELVEDSLRRAAIWEEVKDKL--KEKGTALSGGQQ 167 (274)
T ss_pred cchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC--chHHHHHHHHHHHHHcccchhhHHHh--cCCcccCCHHHH
Confidence 12469999999988875 99999987643221 11122345677888888753222111 235679999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe---------CC
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS---------NG 324 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~---------~G 324 (723)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.++||++++|+ +|
T Consensus 168 qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~~~~~~~~~~G 245 (274)
T PRK14265 168 QRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNM-QQASRVADWTAFFNTEIDEYGKRRG 245 (274)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEecccccccccCc
Confidence 999999999999999999999999999999999999999975 68999988987 47889999999998 89
Q ss_pred eEEEEeChhHHH
Q 004932 325 NTLFFGETLACL 336 (723)
Q Consensus 325 ~iv~~G~~~~~~ 336 (723)
++++.|+++++.
T Consensus 246 ~~~~~g~~~~~~ 257 (274)
T PRK14265 246 KLVEFSPTEQMF 257 (274)
T ss_pred eEEEeCCHHHHH
Confidence 999999998874
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=336.84 Aligned_cols=222 Identities=21% Similarity=0.238 Sum_probs=183.0
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM-- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~--~~~G~I~i~G~~~~~-- 179 (723)
..+.++++++.|. ++.+|+|+|+.+++||+++|+|+||||||||+++|+|+++|.. ..+|+|.++|+++..
T Consensus 7 ~~~~~~~~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~ 81 (261)
T PRK14263 7 IVMDCKLDKIFYG-----NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKG 81 (261)
T ss_pred ceEEEEeEEEEeC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccc
Confidence 3578999998883 3579999999999999999999999999999999999987620 135999999987531
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHH
Q 004932 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (723)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (723)
.++.++|++|++.++ .+|+.||+.+....... .....++++++++.++|.+...... +..++.|||||||
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~i~~~~--~~~~~~LS~G~~q 156 (261)
T PRK14263 82 VDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRY--KGDLGDRVKHALQGAALWDEVKDKL--KVSGLSLSGGQQQ 156 (261)
T ss_pred cchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCc--hHHHHHHHHHHHHHcCCchhhhhhh--hCCcccCCHHHHH
Confidence 124689999999887 59999999887543211 1123457889999999965433322 2356799999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe--------CCeE
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS--------NGNT 326 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~--------~G~i 326 (723)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|+++|++ .++.++||++++|+ +|++
T Consensus 157 rv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~-~~i~~~~d~v~~l~~~~~~~~~~G~i 234 (261)
T PRK14263 157 RLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNM-QQAIRVADTTAFFSVDISQGTRTGYL 234 (261)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEecccccccCCceE
Confidence 99999999999999999999999999999999999999964 78999988887 47889999999996 8999
Q ss_pred EEEeChhHHHH
Q 004932 327 LFFGETLACLQ 337 (723)
Q Consensus 327 v~~G~~~~~~~ 337 (723)
++.|+++++.+
T Consensus 235 ~~~g~~~~~~~ 245 (261)
T PRK14263 235 VEMGPTAQIFQ 245 (261)
T ss_pred EEeCCHHHHHh
Confidence 99999887643
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=338.87 Aligned_cols=222 Identities=21% Similarity=0.282 Sum_probs=180.5
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC------EeC
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG------AKS 177 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G------~~~ 177 (723)
..+.++|+++.+. ++.+|+|+|+.+.+||+++|+||||||||||+++|+|+.+|+. |+|.++| ++.
T Consensus 9 ~~i~~~~~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~---G~v~~~G~~~~~g~~~ 80 (257)
T PRK14246 9 DVFNISRLYLYIN-----DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYD---SKIKVDGKVLYFGKDI 80 (257)
T ss_pred hheeeeeEEEecC-----CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---CceeEcCEEEECCccc
Confidence 4689999999984 4579999999999999999999999999999999999998764 5555554 443
Q ss_pred CC-----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHH
Q 004932 178 EM-----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (723)
Q Consensus 178 ~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe 252 (723)
.. .++.++|++|++.+++.+||+||+.+...........+.+++++++++.+++.+...... +..++.|||||
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~LS~G~ 158 (257)
T PRK14246 81 FQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRL--NSPASQLSGGQ 158 (257)
T ss_pred ccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhh--cCCcccCCHHH
Confidence 21 134689999999999999999999886433211111123456889999999964221111 22456999999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004932 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
|||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ ..+.++||++++|++|+++..|++
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~-~~~~~~~d~v~~l~~g~i~~~g~~ 236 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNP-QQVARVADYVAFLYNGELVEWGSS 236 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999965 68999999987 478899999999999999999998
Q ss_pred hHHHH
Q 004932 333 LACLQ 337 (723)
Q Consensus 333 ~~~~~ 337 (723)
+++.+
T Consensus 237 ~~~~~ 241 (257)
T PRK14246 237 NEIFT 241 (257)
T ss_pred HHHHh
Confidence 87653
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=377.65 Aligned_cols=214 Identities=23% Similarity=0.336 Sum_probs=181.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++||++.+. .++++|+|+|+++++||.+||+||||||||||+++|+|++ |++ |+|.+||.+...
T Consensus 349 ~i~~~~vsf~~~----~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~---G~I~i~g~~i~~~~~~~ 420 (588)
T PRK11174 349 TIEAEDLEILSP----DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ---GSLKINGIELRELDPES 420 (588)
T ss_pred eEEEEeeEEecc----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC---cEEEECCEecccCCHHH
Confidence 599999997653 2357999999999999999999999999999999999999 754 999999987643
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (723)
.++.++||+|++.+|.. |++|||.++. +. ..+++++++++..++.+..++++.|.+ ....|||||||
T Consensus 421 lr~~i~~v~Q~~~LF~~-TI~eNI~~g~----~~---~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQ 492 (588)
T PRK11174 421 WRKHLSWVGQNPQLPHG-TLRDNVLLGN----PD---ASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQ 492 (588)
T ss_pred HHhheEEecCCCcCCCc-CHHHHhhcCC----CC---CCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHH
Confidence 13579999999999864 9999997641 11 245678899999999877665544333 23569999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|++|||||+++|+|||||||||+||+.++..|.+.|+++. +++|+|+++|+++ ..+.||+|++|++|++++.|+.++
T Consensus 493 RialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~e 569 (588)
T PRK11174 493 RLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYAE 569 (588)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHHH
Confidence 9999999999999999999999999999999999999985 4789999999984 456799999999999999999887
Q ss_pred HHH
Q 004932 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
+.+
T Consensus 570 L~~ 572 (588)
T PRK11174 570 LSQ 572 (588)
T ss_pred HHh
Confidence 754
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=370.17 Aligned_cols=219 Identities=26% Similarity=0.394 Sum_probs=182.8
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 004932 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (723)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (723)
...++++||+++|+.+ .+.+||+|+|+.+++|+.+||+|||||||||++++|.+++.|+. |+|+++|.+++.
T Consensus 348 ~g~ief~nV~FsYPsR--pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~---G~V~idG~di~~~~~ 422 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSR--PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTS---GEVLIDGEDIRNLNL 422 (1228)
T ss_pred ccceEEEEEEecCCCC--CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC---ceEEEcCccchhcch
Confidence 3579999999999753 35689999999999999999999999999999999999999985 999999987643
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCC-----CCCCCCCHHH
Q 004932 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGE 252 (723)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGe 252 (723)
.+.++|.|.|+|.+| ..|++||+.|+ .+ ...+++++++.+..+..+...+++.|. +...+|||||
T Consensus 423 ~~lr~~iglV~QePvlF-~~tI~eNI~~G----~~---dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQ 494 (1228)
T KOG0055|consen 423 KWLRSQIGLVSQEPVLF-ATTIRENIRYG----KP---DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQ 494 (1228)
T ss_pred HHHHhhcCeeeechhhh-cccHHHHHhcC----CC---cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHH
Confidence 235799999999887 56999999774 11 124556777777766655544443322 2334599999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004932 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
|||++|||||+.+|+|||||||||+||+.+...+.+.|++..+ |+|.|+++|..+ .+.+ +|+|++|++|+||+.|+.
T Consensus 495 KQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~-grTTivVaHRLS-tIrn-aD~I~v~~~G~IvE~G~h 571 (1228)
T KOG0055|consen 495 KQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK-GRTTIVVAHRLS-TIRN-ADKIAVMEEGKIVEQGTH 571 (1228)
T ss_pred HHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc-CCeEEEEeeehh-hhhc-cCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999999999999988764 677777789875 6665 999999999999999999
Q ss_pred hHHHH
Q 004932 333 LACLQ 337 (723)
Q Consensus 333 ~~~~~ 337 (723)
+|++.
T Consensus 572 ~ELi~ 576 (1228)
T KOG0055|consen 572 DELIA 576 (1228)
T ss_pred HHHHh
Confidence 99875
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=337.01 Aligned_cols=221 Identities=21% Similarity=0.269 Sum_probs=180.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARMYGEVFVNGAKSEM--- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~--~~~~~G~I~i~G~~~~~--- 179 (723)
.++++||++.|. .+.+|+|+|+++++||+++|+|+||||||||+|+|+|+.++ ....+|+|.++|+++..
T Consensus 10 ~l~i~~v~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 84 (264)
T PRK14243 10 VLRTENLNVYYG-----SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV 84 (264)
T ss_pred EEEEeeeEEEEC-----CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence 589999999984 34699999999999999999999999999999999998752 10125999999986521
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004932 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
.++.++|++|++.+++ .||.||+.+...... .....+++++++++.+++.+..+... +..+.+||||||||
T Consensus 85 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LSgGq~qr 159 (264)
T PRK14243 85 DPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING--YKGDMDELVERSLRQAALWDEVKDKL--KQSGLSLSGGQQQR 159 (264)
T ss_pred ChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC--cchHHHHHHHHHHHHhCchhhHHHHh--cCCcccCCHHHHHH
Confidence 1246999999998887 499999987653321 11123455777888888854322211 23566999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe---------CCeE
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS---------NGNT 326 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~---------~G~i 326 (723)
++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|+ +|++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~-~~~~~~~d~v~~l~~~~~~~~~~~g~i 237 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNM-QQAARVSDMTAFFNVELTEGGGRYGYL 237 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccccccccCceE
Confidence 9999999999999999999999999999999999999976 58999988887 58899999999998 8999
Q ss_pred EEEeChhHHHH
Q 004932 327 LFFGETLACLQ 337 (723)
Q Consensus 327 v~~G~~~~~~~ 337 (723)
++.|+++++.+
T Consensus 238 ~~~~~~~~~~~ 248 (264)
T PRK14243 238 VEFDRTEKIFN 248 (264)
T ss_pred EEeCCHHHHHh
Confidence 99999988753
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=378.70 Aligned_cols=221 Identities=21% Similarity=0.232 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~------ 178 (723)
.++++||++.|.... ...++|+||||.+++||++||+||||||||||+|+|+|+++|+. |+|.++|....
T Consensus 12 ~l~v~~l~~~y~~~~-~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~---G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 12 VLAVENLNIAFMQEQ-QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAG---GLVQCDKMLLRRRSRQV 87 (623)
T ss_pred eEEEeceEEEecCCC-CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC---eEEEECCEEeccccccc
Confidence 589999999995321 13469999999999999999999999999999999999998874 99999886320
Q ss_pred -------------CCCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch---Hhhhhhc
Q 004932 179 -------------MPYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD---YANKLIG 240 (723)
Q Consensus 179 -------------~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~ig 240 (723)
...+.++||+|++ .+++.+||.||+.+...........+.++++.++++.+||.+ ..++
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~--- 164 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSR--- 164 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhC---
Confidence 0113599999997 688899999999987654211111224567899999999964 3444
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEE
Q 004932 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRIC 319 (723)
Q Consensus 241 ~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~ 319 (723)
++++|||||||||+||+||+.+|+||||||||+|||+.++.++.++|++++++ |+|||+++|+. ..+.++||||+
T Consensus 165 ---~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl-~~~~~~adri~ 240 (623)
T PRK10261 165 ---YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM-GVVAEIADRVL 240 (623)
T ss_pred ---CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEE
Confidence 55699999999999999999999999999999999999999999999999865 89999988876 57889999999
Q ss_pred EEeCCeEEEEeChhHHH
Q 004932 320 LLSNGNTLFFGETLACL 336 (723)
Q Consensus 320 vL~~G~iv~~G~~~~~~ 336 (723)
+|++|++++.|+++++.
T Consensus 241 vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 241 VMYQGEAVETGSVEQIF 257 (623)
T ss_pred EeeCCeecccCCHHHhh
Confidence 99999999999988764
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=340.81 Aligned_cols=216 Identities=20% Similarity=0.335 Sum_probs=179.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--Cc
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--YG 182 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--~~ 182 (723)
.++++|+++.|++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++.... .+
T Consensus 6 ~l~~~~l~~~~~~----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (272)
T PRK15056 6 GIVVNDVTVTWRN----GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS---GKISILGQPTRQALQKN 78 (272)
T ss_pred eEEEEeEEEEecC----CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEhHHhhccc
Confidence 5899999999842 3469999999999999999999999999999999999998875 9999999875321 23
Q ss_pred eEEEEcCCCccC--CCCCHHHHHHHHHHh--cC-CCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004932 183 SYGFVERETTLI--GSLTVREYLYYSALL--QL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 183 ~~~yv~Q~~~l~--~~lTV~E~l~~~~~~--~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
.++|++|++.+. ...+++|++.++... .. .......+++++++++.+||.+..++.+ ..||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgG~~qrv~ 152 (272)
T PRK15056 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI------GELSGGQKKRVF 152 (272)
T ss_pred eEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc------ccCCHHHHHHHH
Confidence 599999997652 235789988653211 00 0001123456788999999988877755 489999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||+++++ +|++++.|+++++
T Consensus 153 laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~-~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNL-GSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 99999999999999999999999999999999999988899999988887 4788999999877 8999999998775
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=333.51 Aligned_cols=222 Identities=20% Similarity=0.273 Sum_probs=181.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (723)
.++++||++.+. ++.+|+|+|+++.+||+++|+||||||||||+++|+|+.+ |....+|+|.++|.++..
T Consensus 3 ~l~~~~v~~~~~-----~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 77 (250)
T PRK14266 3 RIEVENLNTYFD-----DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77 (250)
T ss_pred EEEEEeEEEEeC-----CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc
Confidence 478999999884 3569999999999999999999999999999999999864 210125999999987532
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004932 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
.++.++|++|++.+++. |+.||+.+.............++++.++++.+++.+...... +..+..||||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~Gq~qr 154 (250)
T PRK14266 78 DVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKL--DKSALGLSGGQQQR 154 (250)
T ss_pred cHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHH--hCCcccCCHHHHHH
Confidence 13469999999988875 999999876432211111123466888999999864332222 23556999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.+.+|++++|++|++++.|+++++
T Consensus 155 v~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~-~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 155 LCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNM-QQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCH-HHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999964 78999999987 478899999999999999999998876
Q ss_pred H
Q 004932 336 L 336 (723)
Q Consensus 336 ~ 336 (723)
.
T Consensus 233 ~ 233 (250)
T PRK14266 233 F 233 (250)
T ss_pred H
Confidence 4
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-40 Score=367.68 Aligned_cols=216 Identities=24% Similarity=0.347 Sum_probs=182.5
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (723)
..++|+||++.|+.+ .+.++|+|+||+++|||++||+||||+||||+.++|-.++.|++ |+|++||.|++.
T Consensus 464 G~IeF~~VsFaYP~R--p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pts---G~IllDG~~i~~~~~~ 538 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTR--PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTS---GRILLDGVPISDINHK 538 (716)
T ss_pred ceEEEEEeeeecCCC--CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC---CeEEECCeehhhcCHH
Confidence 479999999999753 46789999999999999999999999999999999999999986 999999998643
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCC-------chHhhhhhcCCCCCCCCCHH
Q 004932 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSL-------SDYANKLIGGHCYMKGLPCG 251 (723)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~~LSGG 251 (723)
.++.+|+|.||+.||. -||+|||.|+.. ...+++++.+.+..+- .+-.|+.+| ++..+||||
T Consensus 539 ~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-------~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VG--EkG~qLSGG 608 (716)
T KOG0058|consen 539 YLRRKIGLVGQEPVLFS-GSIRENIAYGLD-------NATDEEIEAAAKMANAHEFITNFPDGYNTVVG--EKGSQLSGG 608 (716)
T ss_pred HHHHHeeeeeccceeec-ccHHHHHhcCCC-------CCCHHHHHHHHHHhChHHHHHhCccccccccC--Cccccccch
Confidence 1367999999999996 499999988642 1234445555555443 344566665 345589999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004932 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 252 erqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
||||++|||||++||+||||||.||+||+++...|.+.|.++.++ +|||++.|..+ ..+.+|+|+++++|++++.|+
T Consensus 609 QKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvIAHRLS--TV~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 609 QKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQG-RTVLVIAHRLS--TVRHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred HHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEEehhhh--HhhhccEEEEEcCCeEEeccc
Confidence 999999999999999999999999999999999999999998764 89999888764 357799999999999999998
Q ss_pred hhHHHH
Q 004932 332 TLACLQ 337 (723)
Q Consensus 332 ~~~~~~ 337 (723)
-+|+++
T Consensus 686 h~eLl~ 691 (716)
T KOG0058|consen 686 HDELLS 691 (716)
T ss_pred HHHHhh
Confidence 887754
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=329.52 Aligned_cols=209 Identities=26% Similarity=0.389 Sum_probs=174.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++|+++.+.+ ..+.+|+|+|+.+++||+++|+||||||||||+++|+|+.+|.. |+|.++|++...
T Consensus 2 ~l~~~~l~~~~~~---~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~ 75 (220)
T cd03245 2 RIEFRNVSFSYPN---QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTS---GSVLLDGTDIRQLDPAD 75 (220)
T ss_pred eEEEEEEEEEcCC---CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CeEEECCEEhHHCCHHH
Confidence 3789999998842 12469999999999999999999999999999999999998875 999999986431
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCC-----CCCCCCCHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERR 254 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerq 254 (723)
.++.++|++|++.+++ .||.||+.+.. .. ...+.+.++++.+++.+..++.+.+. ..+.+|||||||
T Consensus 76 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~----~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~q 147 (220)
T cd03245 76 LRRNIGYVPQDVTLFY-GTLRDNITLGA----PL---ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQ 147 (220)
T ss_pred HHhhEEEeCCCCcccc-chHHHHhhcCC----CC---CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHH
Confidence 1246899999998886 69999996531 11 12345678899999988877754211 134689999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++ +|||+++|++. .+ ++||++++|++|++++.|
T Consensus 148 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 148 AVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999999999999999999764 89999999875 44 799999999999998764
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=333.24 Aligned_cols=217 Identities=23% Similarity=0.341 Sum_probs=174.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C----
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P---- 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~-~---- 180 (723)
++++|+++.+.+. .++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.+ |+|.++|.+... .
T Consensus 1 l~i~~l~~~~~~~--~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 75 (238)
T cd03249 1 IEFKNVSFRYPSR--PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTS---GEILLDGVDIRDLNLRWL 75 (238)
T ss_pred CeEEEEEEecCCC--CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCC---CEEEECCEehhhcCHHHH
Confidence 3689999988421 12469999999999999999999999999999999999998875 999999987431 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHHHHH
Q 004932 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRR 255 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerqR 255 (723)
.+.++|++|++.+++ .||+||+.+.... . ..+.+.+.++..++.+..+.+..+ +..++.||||||||
T Consensus 76 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~---~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 147 (238)
T cd03249 76 RSQIGLVSQEPVLFD-GTIAENIRYGKPD---A----TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQR 147 (238)
T ss_pred HhhEEEECCchhhhh-hhHHHHhhccCCC---C----CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHH
Confidence 245999999988876 6999999764211 0 112234555555665544333210 23467999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
|+|||+|+.+|++|||||||+|||+.++..+.+.|++++ +|+|||+++|++. ++. .||++++|++|++++.|+.+++
T Consensus 148 v~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~~-~~d~v~~l~~G~i~~~~~~~~~ 224 (238)
T cd03249 148 IAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TIR-NADLIAVLQNGQVVEQGTHDEL 224 (238)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999997 7899999999874 554 8999999999999999988776
Q ss_pred HHH
Q 004932 336 LQH 338 (723)
Q Consensus 336 ~~~ 338 (723)
.+.
T Consensus 225 ~~~ 227 (238)
T cd03249 225 MAQ 227 (238)
T ss_pred hhc
Confidence 543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=381.61 Aligned_cols=213 Identities=25% Similarity=0.311 Sum_probs=183.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++||++.|++ .++.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|++ |+|.+||++...
T Consensus 451 ~I~~~nvsf~Y~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~---G~I~idg~~i~~~~~~~ 524 (686)
T TIGR03797 451 AIEVDRVTFRYRP---DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPES---GSVFYDGQDLAGLDVQA 524 (686)
T ss_pred eEEEEEEEEEcCC---CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCEEcCcCCHHH
Confidence 6899999999953 23579999999999999999999999999999999999999975 999999998643
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (723)
.++.++||+|++.+|+ .|++||+.++. + ..++++.++++..++.+..++.+.|.+ ....|||||||
T Consensus 525 lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~----~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQ 595 (686)
T TIGR03797 525 VRRQLGVVLQNGRLMS-GSIFENIAGGA----P----LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQ 595 (686)
T ss_pred HHhccEEEccCCccCc-ccHHHHHhcCC----C----CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHH
Confidence 2357999999999986 49999997631 1 235668899999999887765544332 24679999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|++|||||+++|++|+||||||+||+.++.++.+.|+++ ++|+|+++|+++ ..+.||+|++|++|++++.|+.++
T Consensus 596 RialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~G~iv~~G~~~~ 670 (686)
T TIGR03797 596 RLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDAGRVVQQGTYDE 670 (686)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999886 579999999984 456799999999999999999888
Q ss_pred HHH
Q 004932 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
+.+
T Consensus 671 Ll~ 673 (686)
T TIGR03797 671 LMA 673 (686)
T ss_pred HHh
Confidence 754
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=321.40 Aligned_cols=187 Identities=46% Similarity=0.738 Sum_probs=163.3
Q ss_pred eEEEEeEEEEEeccc-ccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC--
Q 004932 105 SVVWKDLTVTIKGKR-RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEM-- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~-~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~--~~~~~~~G~I~i~G~~~~~-- 179 (723)
.++++|+++.|.+.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|+. +|.. |+|.++|++...
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~---G~i~~~g~~~~~~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVS---GEVLINGRPLDKRS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCc---eEEEECCEeCchHh
Confidence 588999999995310 01256999999999999999999999999999999999999 7764 999999987542
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (723)
..+.++|++|++.+++.+|++||+.+.... ..||||||||++||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~------------------------------------~~LS~G~~qrv~la 123 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAKL------------------------------------RGLSGGERKRVSIA 123 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHHh------------------------------------ccCCHHHHHHHHHH
Confidence 235699999999999999999999653210 06999999999999
Q ss_pred HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 260 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++..++.++||++++|++|++++.|
T Consensus 124 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 124 LELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998779999999999865688899999999999998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=331.55 Aligned_cols=215 Identities=24% Similarity=0.341 Sum_probs=176.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++|+++.+.+ .+.+++|+|+.+++||+++|+|||||||||||++|+|+++|.. |+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~----~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 74 (229)
T cd03254 2 EIEFENVNFSYDE----KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQK---GQILIDGIDIRDISRKS 74 (229)
T ss_pred eEEEEEEEEecCC----CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECCEeHHHcCHHH
Confidence 4789999998842 2469999999999999999999999999999999999998875 999999986432
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERR 254 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerq 254 (723)
.++.++|++|++.+++. ||+||+.+... . .....+++.++.+++.+..++...+ +..+++|||||||
T Consensus 75 ~~~~i~~~~q~~~~~~~-tv~~~~~~~~~----~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~ 146 (229)
T cd03254 75 LRSMIGVVLQDTFLFSG-TIMENIRLGRP----N---ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQ 146 (229)
T ss_pred HhhhEEEecCCchhhhh-HHHHHHhccCC----C---CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHH
Confidence 12458999999988875 99999975421 1 1223456667777776655543210 1245799999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
||+|||+|+.+|++|||||||+|||+.++..+++.|++++ +|+|||+++|++. ++. .||++++|++|++++.|+.++
T Consensus 147 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~~~~~~ 223 (229)
T cd03254 147 LLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TIK-NADKILVLDDGKIIEEGTHDE 223 (229)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HHh-hCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999999999999996 5899999999985 554 599999999999999998776
Q ss_pred HHH
Q 004932 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
+.+
T Consensus 224 ~~~ 226 (229)
T cd03254 224 LLA 226 (229)
T ss_pred HHh
Confidence 543
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=323.62 Aligned_cols=197 Identities=22% Similarity=0.281 Sum_probs=170.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (723)
++++|+++.+. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+++|+. |+|.++|++... ..
T Consensus 2 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 2 LEARNLACERD-----ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDA---GEVLWQGEPIRRQRDEYH 73 (204)
T ss_pred eEEEEEEEEEC-----CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEcccchHHhh
Confidence 67899999984 3469999999999999999999999999999999999999875 999999987532 13
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.++|++|++.+++.+|+.||+.+...... . ...++++++++.+||.+..++.+ ..||||||||++||||
T Consensus 74 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~--~--~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G~~qrl~la~a 143 (204)
T PRK13538 74 QDLLYLGHQPGIKTELTALENLRFYQRLHG--P--GDDEALWEALAQVGLAGFEDVPV------RQLSAGQQRRVALARL 143 (204)
T ss_pred hheEEeCCccccCcCCcHHHHHHHHHHhcC--c--cHHHHHHHHHHHcCCHHHhhCCh------hhcCHHHHHHHHHHHH
Confidence 468999999999999999999987653321 1 23467889999999988777654 4999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (723)
|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++. .+.+..+|++.+
T Consensus 144 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 144 WLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 99999999999999999999999999999999878899999999974 676777787776
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=321.25 Aligned_cols=186 Identities=41% Similarity=0.670 Sum_probs=161.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC-CC
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-PY 181 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~--~~~~~~G~I~i~G~~~~~-~~ 181 (723)
.++++|+++.|.+.. .++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ ++ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~---~G~i~~~g~~~~~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKG-GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI---TGEILINGRPLDKNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCC-CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCc---ceEEEECCEehHHHhh
Confidence 578999999995311 12569999999999999999999999999999999999863 44 5999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.++|++|++.+++.+|++||+.+.... + +||||||||++||||
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~-----------------~-------------------~LSgGe~qrv~la~a 122 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSALL-----------------R-------------------GLSVEQRKRLTIGVE 122 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHHH-----------------h-------------------cCCHHHhHHHHHHHH
Confidence 5699999999999999999999763210 0 699999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC-CeEEEEe
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-GNTLFFG 330 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~-G~iv~~G 330 (723)
|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+.||++++|++ |++++.|
T Consensus 123 l~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 123 LAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999877999999999985457789999999998 9999875
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=334.92 Aligned_cols=223 Identities=20% Similarity=0.233 Sum_probs=179.9
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCC---
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSE--- 178 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~--~~~G~I~i~G~~~~--- 178 (723)
..++++|+++.+. ++.+|+|+|+.+++||+++|+|+||||||||+++|+|+.+|.. ..+|+|.++|.+..
T Consensus 15 ~~l~~~~l~~~~~-----~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 15 QKSEVNKLNFYYG-----GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred ceEEEEEEEEEEC-----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 3589999999984 3469999999999999999999999999999999999987421 13699999997532
Q ss_pred ------CCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHH
Q 004932 179 ------MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (723)
Q Consensus 179 ------~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe 252 (723)
..++.++|++|++.+++. ||+||+.+.............+++++++++.+++.+...... +..+..|||||
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~G~ 166 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRL--GDLAFNLSGGQ 166 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHH--hCCcccCCHHH
Confidence 113468999999998885 999999876432211111112456788888888753221111 22456999999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004932 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++ +++.++||++++|++|++++.|+.
T Consensus 167 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~-~~~~~~~d~i~~l~~G~i~~~g~~ 244 (265)
T PRK14252 167 QQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNM-QQAARVSDYTAYMYMGELIEFGAT 244 (265)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999976 68999988887 578899999999999999999998
Q ss_pred hHHH
Q 004932 333 LACL 336 (723)
Q Consensus 333 ~~~~ 336 (723)
+++.
T Consensus 245 ~~~~ 248 (265)
T PRK14252 245 DTIF 248 (265)
T ss_pred HHHH
Confidence 7764
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=367.89 Aligned_cols=216 Identities=20% Similarity=0.357 Sum_probs=182.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (723)
++++|+++.|. ++.+|+|||+.+++||+++|+||||||||||+|+|+|+.+|+ ..+|+|.++|++....
T Consensus 2 l~i~~l~~~~~-----~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~ 75 (500)
T TIGR02633 2 LEMKGIVKTFG-----GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDT 75 (500)
T ss_pred EEEEeEEEEeC-----CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHH
Confidence 67899999984 346999999999999999999999999999999999998862 0249999999875321
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCC---CccchHHHHHHHHHHHcCCchHh-hhhhcCCCCCCCCCHHHHHH
Q 004932 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYA-NKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~-~~~ig~~~~~~~LSGGerqR 255 (723)
.+.++|++|++.+++.+||.||+.+....... ....+.+++++++++.++|.+.. ++.+ .+||||||||
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgG~~qr 149 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV------GDYGGGQQQL 149 (500)
T ss_pred HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch------hhCCHHHHHH
Confidence 24599999999999999999999876432211 01112345688999999997654 3434 4999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||+|++|++|++++.|++++
T Consensus 150 v~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 150 VEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCccc
Confidence 9999999999999999999999999999999999999998899999988886 57889999999999999999988764
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=367.99 Aligned_cols=212 Identities=17% Similarity=0.298 Sum_probs=181.1
Q ss_pred EeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC------Cc
Q 004932 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP------YG 182 (723)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~------~~ 182 (723)
+|+++.|. ++.+|+|+|+.+++||+++|+||||||||||+|+|+|+++|++ |+|.++|++.... ++
T Consensus 2 ~nl~~~~~-----~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~~~~ 73 (491)
T PRK10982 2 SNISKSFP-----GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDS---GSILFQGKEIDFKSSKEALEN 73 (491)
T ss_pred CceEEEeC-----CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCc---eEEEECCEECCCCCHHHHHhC
Confidence 67888883 3569999999999999999999999999999999999998874 9999999875321 24
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCC--CccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHH
Q 004932 183 SYGFVERETTLIGSLTVREYLYYSALLQLP--GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (723)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~--~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (723)
.++|++|+..+++.+||+||+.+....... ....+..++++++++.+++.+..++.+ .+|||||||||+|||
T Consensus 74 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~qrv~lA~ 147 (491)
T PRK10982 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV------ATLSVSQMQMIEIAK 147 (491)
T ss_pred CEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch------hhCCHHHHHHHHHHH
Confidence 699999999899999999999875321101 011123456889999999987776654 499999999999999
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 261 aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|++++.|++++.
T Consensus 148 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 148 AFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999999999999999999999999999988899999988887 578899999999999999999987664
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=333.88 Aligned_cols=215 Identities=26% Similarity=0.340 Sum_probs=170.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (723)
++++|+++.+.++ ++.+|+|+|+.+++||+++|+||||||||||+++|+|+.+|++ |+|.++|++... .
T Consensus 1 i~~~~l~~~~~~~---~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 74 (234)
T cd03251 1 VEFKNVTFRYPGD---GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDS---GRILIDGHDVRDYTLASL 74 (234)
T ss_pred CEEEEEEEEeCCC---CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCC---CEEEECCEEhhhCCHHHH
Confidence 3689999988421 2369999999999999999999999999999999999998875 999999986432 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhc-----CCCCCCCCCHHHHHH
Q 004932 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG-----GHCYMKGLPCGERRR 255 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig-----~~~~~~~LSGGerqR 255 (723)
++.++|++|++.+++ .||+||+.+.... . ....+++.++..++.+..+.... -+..+..||||||||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~----~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qr 146 (234)
T cd03251 75 RRQIGLVSQDVFLFN-DTVAENIAYGRPG----A---TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQR 146 (234)
T ss_pred HhhEEEeCCCCeecc-ccHHHHhhccCCC----C---CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHH
Confidence 246899999998886 6999999764211 0 11223333344444333322110 022456999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++. ++.. ||++++|++|++++.|+++++
T Consensus 147 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~v~~l~~G~i~~~~~~~~~ 223 (234)
T cd03251 147 IAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TIEN-ADRIVVLEDGKIVERGTHEEL 223 (234)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHhh-CCEEEEecCCeEeeeCCHHHH
Confidence 9999999999999999999999999999999999999974 889999999985 5655 999999999999999998776
Q ss_pred HH
Q 004932 336 LQ 337 (723)
Q Consensus 336 ~~ 337 (723)
.+
T Consensus 224 ~~ 225 (234)
T cd03251 224 LA 225 (234)
T ss_pred HH
Confidence 54
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=368.09 Aligned_cols=222 Identities=23% Similarity=0.297 Sum_probs=184.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC-CEe---CC-
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN-GAK---SE- 178 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~-G~~---~~- 178 (723)
..++++||++.|.+.....+.+|+|+||.+++||+++|+||||||||||+|+|+|+++|+. |+|.++ |.+ ..
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~---G~i~~~~g~~~~~~~~ 354 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS---GEVNVRVGDEWVDMTK 354 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEEecCCccccccc
Confidence 3589999999984211123469999999999999999999999999999999999998874 999996 532 11
Q ss_pred C-------CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-----HhhhhhcCCCCCC
Q 004932 179 M-------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-----YANKLIGGHCYMK 246 (723)
Q Consensus 179 ~-------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~ig~~~~~~ 246 (723)
. .++.++|++|++.+++.+||.||+.+...+..+ ....+++++++++.++|.+ ..++. +.
T Consensus 355 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~~------~~ 426 (520)
T TIGR03269 355 PGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELP--DELARMKAVITLKMVGFDEEKAEEILDKY------PD 426 (520)
T ss_pred cchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCC--HHHHHHHHHHHHHhCCCCCccchhhhhCC------hh
Confidence 0 124589999999899999999999875432211 1123456889999999974 45554 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 004932 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (723)
Q Consensus 247 ~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (723)
+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |.|||+++|++ .++.++||++++|++|+
T Consensus 427 ~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~ 505 (520)
T TIGR03269 427 ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDM-DFVLDVCDRAALMRDGK 505 (520)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999864 89999988887 57889999999999999
Q ss_pred EEEEeChhHHHH
Q 004932 326 TLFFGETLACLQ 337 (723)
Q Consensus 326 iv~~G~~~~~~~ 337 (723)
+++.|+++++.+
T Consensus 506 i~~~g~~~~~~~ 517 (520)
T TIGR03269 506 IVKIGDPEEIVE 517 (520)
T ss_pred EEEECCHHHHHh
Confidence 999999887654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=366.79 Aligned_cols=225 Identities=22% Similarity=0.261 Sum_probs=184.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCCC--
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEMP-- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~--~~~~G~I~i~G~~~~~~-- 180 (723)
.++++|+++.|..+. ..+.+|+|+|+.+++||++||+||||||||||+|+|+|+++|. ...+|+|.++|+++...
T Consensus 5 ~l~~~~l~~~~~~~~-~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 5 LLAIENLSVAFRQQQ-TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred eEEEeceEEEecCCC-CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 589999999995211 1247999999999999999999999999999999999999862 01259999999875321
Q ss_pred -------CceEEEEcCCCc--cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchH---hhhhhcCCCCCCCC
Q 004932 181 -------YGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY---ANKLIGGHCYMKGL 248 (723)
Q Consensus 181 -------~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~ig~~~~~~~L 248 (723)
.+.++|++|++. +++.+|++|++.+..............++++++++.+||.+. .++. +.+|
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~------~~~L 157 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDY------PHQL 157 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhC------Cccc
Confidence 136999999964 677889999987653321111111245678999999999753 4554 4599
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 004932 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (723)
Q Consensus 249 SGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (723)
||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |+|||+++|++ ..+.++||||++|++|+++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL-SIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH-HHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999865 89999988887 4788899999999999999
Q ss_pred EEeChhHHHH
Q 004932 328 FFGETLACLQ 337 (723)
Q Consensus 328 ~~G~~~~~~~ 337 (723)
+.|+++++.+
T Consensus 237 ~~g~~~~~~~ 246 (529)
T PRK15134 237 EQNRAATLFS 246 (529)
T ss_pred EeCCHHHHhh
Confidence 9999887643
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=329.97 Aligned_cols=202 Identities=24% Similarity=0.263 Sum_probs=169.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (723)
+.++++++.|. .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|++....
T Consensus 23 l~~~~~~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~----- 89 (224)
T cd03220 23 LGILGRKGEVG-----EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDS---GTVTVRGRVSSLL----- 89 (224)
T ss_pred hhhhhhhhhcC-----CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEchhh-----
Confidence 66788888773 4679999999999999999999999999999999999998875 9999999864211
Q ss_pred EEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 004932 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (723)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~ 265 (723)
.+...+.+.+||+||+.+....... .....+++++++++.++|.+..++.++ +||||||||++|||+|+.+
T Consensus 90 --~~~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG~~qrv~laral~~~ 160 (224)
T cd03220 90 --GLGGGFNPELTGRENIYLNGRLLGL-SRKEIDEKIDEIIEFSELGDFIDLPVK------TYSSGMKARLAFAIATALE 160 (224)
T ss_pred --cccccCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhhhhCChh------hCCHHHHHHHHHHHHHhcC
Confidence 1123456779999999876543211 112234567889999999888877554 9999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 266 P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.+++|++++|++|++++.|
T Consensus 161 p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 161 PDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999987789999988887 4788899999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=374.28 Aligned_cols=217 Identities=22% Similarity=0.290 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++||++.|++ .++.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|+. |+|.+||.+...
T Consensus 341 ~i~~~~vsf~y~~---~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~---G~I~i~g~~i~~~~~~~ 414 (582)
T PRK11176 341 DIEFRNVTFTYPG---KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDE---GEILLDGHDLRDYTLAS 414 (582)
T ss_pred eEEEEEEEEecCC---CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCC---ceEEECCEEhhhcCHHH
Confidence 5999999999953 23579999999999999999999999999999999999999975 999999987542
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (723)
.++.++|++|++.+|+ .|++|||.++. +. ...+++++++++.+|+.+..+++..|.+ ....|||||||
T Consensus 415 ~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~--~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQ 487 (582)
T PRK11176 415 LRNQVALVSQNVHLFN-DTIANNIAYAR----TE--QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQ 487 (582)
T ss_pred HHhhceEEccCceeec-chHHHHHhcCC----CC--CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHH
Confidence 1357999999999996 59999996531 11 1245678899999998876655543332 23679999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|++|||||+++|+||+||||||+||+.++..+++.|+++. +++|+|+++|++. ..+.||+|++|++|++++.|+.++
T Consensus 488 Ri~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~ 564 (582)
T PRK11176 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAE 564 (582)
T ss_pred HHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999985 4689999999984 467799999999999999999888
Q ss_pred HHH
Q 004932 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
+.+
T Consensus 565 l~~ 567 (582)
T PRK11176 565 LLA 567 (582)
T ss_pred HHh
Confidence 754
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=328.11 Aligned_cols=207 Identities=19% Similarity=0.307 Sum_probs=172.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++||++.+. ++.+++|+|+.+++||+++|+||||||||||+++|+|+.+|+. |+|.++|.+...
T Consensus 7 ~i~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 7 LLQLQNVGYLAG-----DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTS---GTLLFEGEDISTLKPEI 78 (225)
T ss_pred eEEEeccEEeeC-----CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CeEEECCEEcCcCCHHH
Confidence 589999999884 3569999999999999999999999999999999999998875 999999986532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
..+.++|++|++.+++ .||+||+.+....... ...+++++++++.+++. ...++. ++.|||||||||+|
T Consensus 79 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~------~~~LS~G~~qrv~l 148 (225)
T PRK10247 79 YRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---QPDPAIFLDDLERFALPDTILTKN------IAELSGGEKQRISL 148 (225)
T ss_pred HHhccEEEeccccccc-ccHHHHHHhHHhhcCC---ChHHHHHHHHHHHcCCChHHhcCC------cccCCHHHHHHHHH
Confidence 1246899999988887 4999999875433211 12345678999999996 456554 45999999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEe-CCeEEEEeC
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS-NGNTLFFGE 331 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~-~G~iv~~G~ 331 (723)
||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|||+++|++. ++. .||++++|+ ++..+.+|.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~~-~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 149 IRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EIN-HADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HHH-hCCEEEEEecccchHhhhh
Confidence 9999999999999999999999999999999999976 4899999999874 554 699999995 555555553
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=366.07 Aligned_cols=213 Identities=22% Similarity=0.346 Sum_probs=182.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|++....
T Consensus 4 ~l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~i~~~~~~~ 75 (501)
T PRK11288 4 YLSFDGIGKTFP-----GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDA---GSILIDGQEMRFASTTA 75 (501)
T ss_pred eEEEeeeEEEEC-----CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCEECCCCCHHH
Confidence 588999999984 3469999999999999999999999999999999999998875 9999999875321
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCC--ccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH
Q 004932 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPG--FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (723)
++.++|++|++.+++.+||.||+.++....... ...+.+++++++++.+||.+..++.+ .+|||||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~qrv 149 (501)
T PRK11288 76 ALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL------KYLSIGQRQMV 149 (501)
T ss_pred HHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch------hhCCHHHHHHH
Confidence 246999999999999999999998753211111 11123457889999999987666644 49999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004932 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 257 ~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|+++..++.
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRM-EEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCc
Confidence 999999999999999999999999999999999999988899999998887 478899999999999999877653
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=367.79 Aligned_cols=222 Identities=23% Similarity=0.293 Sum_probs=184.8
Q ss_pred ceEEEEeEEEEEeccc------ccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 004932 104 ASVVWKDLTVTIKGKR------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~------~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~ 177 (723)
..++++|+++.|..+. ...+.+|+|||+++++||+++|+||||||||||+|+|+|+++ . +|+|.++|+++
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~---~G~i~~~g~~i 349 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S---QGEIWFDGQPL 349 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C---CcEEEECCEEc
Confidence 3589999999984211 013579999999999999999999999999999999999985 4 49999999865
Q ss_pred CC--------CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCC-CccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCC
Q 004932 178 EM--------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYM 245 (723)
Q Consensus 178 ~~--------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~ 245 (723)
.. .++.++|++|+. .+++.+||.||+.++...... ....+.+++++++++.++|. +..++. +
T Consensus 350 ~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~ 423 (529)
T PRK15134 350 HNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRY------P 423 (529)
T ss_pred cccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcC------C
Confidence 31 124589999996 488889999999886533211 11112346788999999997 466664 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCC
Q 004932 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNG 324 (723)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (723)
++|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|++ .++.++||++++|++|
T Consensus 424 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~-~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL-HVVRALCHQVIVLRQG 502 (529)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhcCeEEEEECC
Confidence 599999999999999999999999999999999999999999999999865 89999988876 5788999999999999
Q ss_pred eEEEEeChhHHH
Q 004932 325 NTLFFGETLACL 336 (723)
Q Consensus 325 ~iv~~G~~~~~~ 336 (723)
++++.|+++++.
T Consensus 503 ~i~~~~~~~~~~ 514 (529)
T PRK15134 503 EVVEQGDCERVF 514 (529)
T ss_pred EEEEEcCHHHHh
Confidence 999999988764
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=323.92 Aligned_cols=201 Identities=20% Similarity=0.281 Sum_probs=174.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CC
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PY 181 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~--~~ 181 (723)
..+.++|+++.+. ++.+++++|+.+++||+++|+|+||||||||+|+|+|+++|+. |+|.++|+++.. ..
T Consensus 10 ~~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~i~~~~~~ 81 (214)
T PRK13543 10 PLLAAHALAFSRN-----EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVES---GQIQIDGKTATRGDRS 81 (214)
T ss_pred ceEEEeeEEEecC-----CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCC---eeEEECCEEccchhhh
Confidence 3589999999884 3469999999999999999999999999999999999999875 999999987542 12
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.++|++|++.+++.+|+.||+.+....+. . ..++.++++++.++|.+..++.+ ..||||||||++|||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~--~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~lara 151 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLHG--R--RAKQMPGSALAIVGLAGYEDTLV------RQLSAGQKKRLALARL 151 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhcC--C--cHHHHHHHHHHHcCChhhccCCh------hhCCHHHHHHHHHHHH
Confidence 458999999999999999999987653321 1 23456788999999988777654 4999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (723)
|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++ .++.++||++++|+.
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 152 WLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCh-hhhhhhcceEEEEee
Confidence 9999999999999999999999999999999988899999998887 578999999999863
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=350.32 Aligned_cols=216 Identities=25% Similarity=0.347 Sum_probs=187.4
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 004932 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (723)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (723)
+..++|+||++.|. .++++|+++||+|++||-+||+|+|||||||++|+|.++.. . +|+|++||+++..
T Consensus 349 ~~~I~F~dV~f~y~----~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~ 420 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYG----PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSL 420 (591)
T ss_pred CCcEEEEeeEEEeC----CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-c---CCcEEECCeeHhhhCh
Confidence 44699999999995 34569999999999999999999999999999999999987 3 3999999997532
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCC-----CCCCCCCHHH
Q 004932 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGE 252 (723)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGe 252 (723)
.++.+||||||..||.. ||.+|+.|+. .+...++|.++.+..|+.+...++.+|. +....|||||
T Consensus 421 ~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn-------~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGe 492 (591)
T KOG0057|consen 421 ESLRQSIGVVPQDSVLFND-TILYNIKYGN-------PSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGE 492 (591)
T ss_pred HHhhhheeEeCCcccccch-hHHHHhhcCC-------CCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccch
Confidence 24579999999999965 9999998752 2235677889999999998877775542 3456799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004932 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
||||+||||++.+|+|+++|||||+||..+..++++.+.+ ...|+|+|++.|... ...-||+|++|++|++.+.|+-
T Consensus 493 kQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~--ll~~~DkI~~l~nG~v~e~gth 569 (591)
T KOG0057|consen 493 KQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLD--LLKDFDKIIVLDNGTVKEYGTH 569 (591)
T ss_pred HHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecch--hHhcCCEEEEEECCeeEEeccH
Confidence 9999999999999999999999999999999999999999 456899999999863 5678999999999999999999
Q ss_pred hHHHH
Q 004932 333 LACLQ 337 (723)
Q Consensus 333 ~~~~~ 337 (723)
++++.
T Consensus 570 ~ell~ 574 (591)
T KOG0057|consen 570 SELLA 574 (591)
T ss_pred HHHhh
Confidence 98875
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=330.97 Aligned_cols=215 Identities=23% Similarity=0.243 Sum_probs=181.5
Q ss_pred ceEEEEeEEEEEeccc---------------ccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee
Q 004932 104 ASVVWKDLTVTIKGKR---------------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~---------------~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G 168 (723)
+.+.++||+++|...+ ...+.+|+++|+.+++||+++|+||||||||||+++|+|+++|+. |
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~---G 79 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTV---G 79 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---e
Confidence 4688999999886421 134569999999999999999999999999999999999999875 9
Q ss_pred EEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCC
Q 004932 169 EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248 (723)
Q Consensus 169 ~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~L 248 (723)
+|.++|. ++++.|+..+.+.+|+.||+.+...... ....+..+.++++++.++|.+..++.+ ..|
T Consensus 80 ~I~~~g~--------~~~~~~~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~L 144 (264)
T PRK13546 80 KVDRNGE--------VSVIAISAGLSGQLTGIENIEFKMLCMG-FKRKEIKAMTPKIIEFSELGEFIYQPV------KKY 144 (264)
T ss_pred EEEECCE--------EeEEecccCCCCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCchhhcCCc------ccC
Confidence 9999985 3566777777788999999987543321 111123445678889999988777654 499
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 004932 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (723)
Q Consensus 249 SGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (723)
||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|+|+++|++ .++.++||++++|++|++++
T Consensus 145 S~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~-~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 145 SSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNL-GQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHHcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999988899999988887 47888999999999999999
Q ss_pred EeChhHHHH
Q 004932 329 FGETLACLQ 337 (723)
Q Consensus 329 ~G~~~~~~~ 337 (723)
.|+.+++.+
T Consensus 224 ~g~~~~~~~ 232 (264)
T PRK13546 224 YGELDDVLP 232 (264)
T ss_pred eCCHHHHHH
Confidence 999887754
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=302.87 Aligned_cols=214 Identities=26% Similarity=0.322 Sum_probs=184.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.+.++|+++.| +..++|.||++..+.||.+.++||||||||||+|.|.=+..|.+ |+..+.|.....
T Consensus 2 sirv~~in~~y-----g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~s---g~l~ia~~~fd~s~~~~ 73 (242)
T COG4161 2 SIQLNGINCFY-----GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRS---GTLNIAGNHFDFSKTPS 73 (242)
T ss_pred ceEEccccccc-----ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCC---CeEEecccccccccCcc
Confidence 47899999998 45689999999999999999999999999999999998887764 999998853211
Q ss_pred ------CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHH
Q 004932 180 ------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253 (723)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGer 253 (723)
.++.+|+|+|+..++|.+||.|||..+...-+.....+.+.+..++++.+.|.+.+|+ +|-.|||||+
T Consensus 74 ~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr------~plhlsggqq 147 (242)
T COG4161 74 DKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADR------YPLHLSGGQQ 147 (242)
T ss_pred HHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccccccc------Cceecccchh
Confidence 1346899999999999999999997654221111222355678899999999999988 4559999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
|||+|||||+.+|++|++||||++|||+-..++++.+++|+..|.|-++++|.- +.....+.+|+.|.+|+||+.|+.+
T Consensus 148 qrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev-~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred hhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeeh-hHHHhhhhheEeeecCeeEeecchh
Confidence 999999999999999999999999999999999999999999999999888886 4677899999999999999999864
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=331.51 Aligned_cols=202 Identities=25% Similarity=0.400 Sum_probs=174.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (723)
.++++||++.|. ++.+|+|+|+.+++||+++|+||||||||||+++|+|+++|++ |+|.++|. ..+
T Consensus 4 ~l~~~~l~~~~~-----~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~---G~i~~~~~------~~i 69 (251)
T PRK09544 4 LVSLENVSVSFG-----QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDE---GVIKRNGK------LRI 69 (251)
T ss_pred EEEEeceEEEEC-----CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCc------cCE
Confidence 588999999984 3469999999999999999999999999999999999998875 99999873 359
Q ss_pred EEEcCCCccCCCC--CHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004932 185 GFVERETTLIGSL--TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 185 ~yv~Q~~~l~~~l--TV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
+|++|++.+++.+ |+.+++.+. +. ..++++.++++.+||.+..++.+ ..|||||||||+|||||
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~-----~~---~~~~~~~~~l~~~gl~~~~~~~~------~~LSgGq~qrv~laral 135 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR-----PG---TKKEDILPALKRVQAGHLIDAPM------QKLSGGETQRVLLARAL 135 (251)
T ss_pred EEeccccccccccChhHHHHHhcc-----cc---ccHHHHHHHHHHcCChHHHhCCh------hhCCHHHHHHHHHHHHH
Confidence 9999998777753 777776431 11 12345788999999998887754 49999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++ .++.++||++++|+ |++++.|+++++.
T Consensus 136 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~-~~i~~~~d~i~~l~-~~i~~~g~~~~~~ 208 (251)
T PRK09544 136 LNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL-HLVMAKTDEVLCLN-HHICCSGTPEVVS 208 (251)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEC-CceEeeCCHHHHh
Confidence 9999999999999999999999999999999865 89999988887 47889999999996 4799999987764
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=372.31 Aligned_cols=214 Identities=21% Similarity=0.289 Sum_probs=185.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++|+++.|++ ++++|+|+|+++++||.+||+|+||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 340 ~i~~~~v~f~y~~----~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~---G~I~idg~~i~~~~~~~ 412 (592)
T PRK10790 340 RIDIDNVSFAYRD----DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTE---GEIRLDGRPLSSLSHSV 412 (592)
T ss_pred eEEEEEEEEEeCC----CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---ceEEECCEEhhhCCHHH
Confidence 5899999999952 2469999999999999999999999999999999999999975 999999987542
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (723)
.++.++||+|++.+|+. |++|||.++. + ..+++++++++.+|+.+..+++++|.+ ....|||||||
T Consensus 413 l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~----~----~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQ 483 (592)
T PRK10790 413 LRQGVAMVQQDPVVLAD-TFLANVTLGR----D----ISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQ 483 (592)
T ss_pred HHhheEEEccCCccccc-hHHHHHHhCC----C----CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHH
Confidence 24679999999999976 9999997641 1 235678999999999987776654433 23569999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|++|||||+.+|+||+||||||+||+.++..+.+.|+++.+ ++|+|+++|++. ....||+|++|++|++++.|+.++
T Consensus 484 RialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~~ 560 (592)
T PRK10790 484 LLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQQ 560 (592)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999865 689999999984 456799999999999999999998
Q ss_pred HHH
Q 004932 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
+.+
T Consensus 561 L~~ 563 (592)
T PRK10790 561 LLA 563 (592)
T ss_pred HHh
Confidence 754
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=332.47 Aligned_cols=199 Identities=24% Similarity=0.335 Sum_probs=170.6
Q ss_pred eeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C----CceEEEEcCCCccCCCCCH
Q 004932 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P----YGSYGFVERETTLIGSLTV 199 (723)
Q Consensus 125 iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~-~----~~~~~yv~Q~~~l~~~lTV 199 (723)
+|+|+|+.+++||+++|+||||||||||+++|+|+.++ +|+|.++|++... . .+.++|++|++.+++.+|+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC----CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 79999999999999999999999999999999999854 3999999987532 1 2358999999888888999
Q ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhh-------CCcEEEEe
Q 004932 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM-------RPHVLFID 272 (723)
Q Consensus 200 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~-------~P~lLlLD 272 (723)
.||+.+..... .......++++++++.++|.+..++.+ +.||||||||++|||||+. +|++||||
T Consensus 87 ~~nl~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 87 FQYLTLHQPDK--TRTEAVASALNEVAEALGLDDKLGRSV------NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHHhcCccC--CCcHHHHHHHHHHHHHcCCHhHhcCCc------ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 99998752211 111123457889999999987777644 4999999999999999998 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 273 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 273 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
|||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|+.+++.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDL-NHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999987899999999987 4788999999999999999999887653
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=328.50 Aligned_cols=213 Identities=24% Similarity=0.340 Sum_probs=172.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (723)
++++|+++.+.+ .+.+|+|+|+.+++||+++|+||||||||||+++|+|+.+|.. |+|.++|++... .
T Consensus 1 l~~~~l~~~~~~----~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~v~~~g~~~~~~~~~~~ 73 (236)
T cd03253 1 IEFENVTFAYDP----GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSS---GSILIDGQDIREVTLDSL 73 (236)
T ss_pred CEEEEEEEEeCC----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CEEEECCEEhhhCCHHHH
Confidence 368999998842 2469999999999999999999999999999999999998875 999999987532 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHHHHH
Q 004932 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRR 255 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerqR 255 (723)
++.++|++|+..+++ .||+||+.+... . .....+.+.++.+++.+..+....+ +..++.||||||||
T Consensus 74 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~----~---~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~r 145 (236)
T cd03253 74 RRAIGVVPQDTVLFN-DTIGYNIRYGRP----D---ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQR 145 (236)
T ss_pred HhhEEEECCCChhhc-chHHHHHhhcCC----C---CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHH
Confidence 245899999998885 699999976421 1 1112244556666665544433110 22456999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|++. .+. .||++++|++|++++.|+.++.
T Consensus 146 l~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~-~~d~~~~l~~g~i~~~~~~~~~ 222 (236)
T cd03253 146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TIV-NADKIIVLKDGRIVERGTHEEL 222 (236)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHH-hCCEEEEEECCEEEeeCCHHHH
Confidence 9999999999999999999999999999999999999987 999999999875 554 4999999999999999987765
Q ss_pred H
Q 004932 336 L 336 (723)
Q Consensus 336 ~ 336 (723)
.
T Consensus 223 ~ 223 (236)
T cd03253 223 L 223 (236)
T ss_pred h
Confidence 4
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=322.18 Aligned_cols=194 Identities=24% Similarity=0.313 Sum_probs=169.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (723)
++++||++.+. .+.+|+|+|+.+++||+++|+|+||||||||+++|+|+.+|++ |+|.++|.+... .+
T Consensus 1 l~i~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (201)
T cd03231 1 LEADELTCERD-----GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLA---GRVLLNGGPLDFQRDSIA 72 (201)
T ss_pred CEEEEEEEEeC-----CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEecccccHHhh
Confidence 36899999884 3569999999999999999999999999999999999998875 999999987432 12
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.++|++|++.+++.+|++||+.+.... ..+++++++++.+++.+..++.+ +.||||||||++||||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~lara 139 (201)
T cd03231 73 RGLLYLGHAPGIKTTLSVLENLRFWHAD-------HSDEQVEEALARVGLNGFEDRPV------AQLSAGQQRRVALARL 139 (201)
T ss_pred hheEEeccccccCCCcCHHHHHHhhccc-------ccHHHHHHHHHHcCChhhhcCch------hhCCHHHHHHHHHHHH
Confidence 4699999999999999999999764211 13456889999999988776644 4999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (723)
|+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++. +....||+++++
T Consensus 140 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 140 LLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 99999999999999999999999999999999888999999999985 677899999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=399.49 Aligned_cols=223 Identities=22% Similarity=0.304 Sum_probs=196.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (723)
..++++||++.|++ .++.+|+|||+.+++||++||+||||||||||+|+|+|+++|++ |+|.++|+++..
T Consensus 1936 ~~L~v~nLsK~Y~~---~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pts---G~I~i~G~~i~~~~~~ 2009 (2272)
T TIGR01257 1936 DILRLNELTKVYSG---TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTS---GDATVAGKSILTNISD 2009 (2272)
T ss_pred ceEEEEEEEEEECC---CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCc---cEEEECCEECcchHHH
Confidence 46899999999942 13579999999999999999999999999999999999999875 999999987632
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (723)
.++.+||++|++.+++.+||+|++.+.+.++.. ...+.+++++++++.+||.+.+++.++ +|||||||||+||
T Consensus 2010 ~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~-~~~~~~~~v~~lLe~lgL~~~~dk~~~------~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2010 VHQNMGYCPQFDAIDDLLTGREHLYLYARLRGV-PAEEIEKVANWSIQSLGLSLYADRLAG------TYSGGNKRKLSTA 2082 (2272)
T ss_pred HhhhEEEEeccccCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCHHHhcCChh------hCCHHHHHHHHHH
Confidence 235699999999999999999999887655421 111235678899999999998888665 9999999999999
Q ss_pred HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHh
Q 004932 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (723)
Q Consensus 260 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (723)
+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||+|+|+. +++.++||||++|++|+++..|+++++...+
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHHh
Confidence 999999999999999999999999999999999988899999988886 5899999999999999999999999988766
Q ss_pred h
Q 004932 340 S 340 (723)
Q Consensus 340 ~ 340 (723)
.
T Consensus 2162 g 2162 (2272)
T TIGR01257 2162 G 2162 (2272)
T ss_pred C
Confidence 4
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=328.09 Aligned_cols=216 Identities=21% Similarity=0.260 Sum_probs=175.1
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC----
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~--~~~~~~~G~I~i~G~~~~~---- 179 (723)
++++||++.+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|+. +|+ +|+|.++|++...
T Consensus 2 i~~~nl~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 2 LSIKDLHVSVE-----DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLELSPE 73 (248)
T ss_pred eEEEEEEEEeC-----CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCC---ceEEEECCCccccCCHH
Confidence 67999999984 346999999999999999999999999999999999995 465 4999999976421
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHH-hcC-CC-c-cc--hHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCCH
Q 004932 180 --PYGSYGFVERETTLIGSLTVREYLYYSAL-LQL-PG-F-FC--QRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPC 250 (723)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~-~~~-~~-~-~~--~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSG 250 (723)
..+.++|++|++.+++.+|+.+++.+... +.. .. . .. ...+.++++++.+++. +..++.+. ++|||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~LS~ 148 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN-----VGFSG 148 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC-----CCCCH
Confidence 11358999999988888888777643211 110 00 0 01 1245678889999995 44444321 37999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhc-CCEEEEEeCCeEEEE
Q 004932 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLFF 329 (723)
Q Consensus 251 GerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv~~ 329 (723)
||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||+++|++. .+... +|++++|++|++++.
T Consensus 149 G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~ 227 (248)
T PRK09580 149 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKS 227 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEECCeEEEe
Confidence 9999999999999999999999999999999999999999999888899999999874 56666 899999999999999
Q ss_pred eChhHH
Q 004932 330 GETLAC 335 (723)
Q Consensus 330 G~~~~~ 335 (723)
|+++.+
T Consensus 228 g~~~~~ 233 (248)
T PRK09580 228 GDFTLV 233 (248)
T ss_pred CCHHHH
Confidence 998754
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=338.21 Aligned_cols=223 Identities=23% Similarity=0.307 Sum_probs=180.0
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~--~~~~G~I~i~G~~~~~-- 179 (723)
..+.++||++.+. .+.+|+++|+.+++||+++|+|+||||||||+++|+|++++. ...+|+|.++|.++..
T Consensus 44 ~~l~i~nl~~~~~-----~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~ 118 (305)
T PRK14264 44 AKLSVEDLDVYYG-----DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDG 118 (305)
T ss_pred ceEEEEEEEEEeC-----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 3589999999984 346999999999999999999999999999999999998520 0125999999987531
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-----------Cc-cchHHHHHHHHHHHcCCchHhhhhhcCC
Q 004932 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLP-----------GF-FCQRKNVVEDAIHAMSLSDYANKLIGGH 242 (723)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-----------~~-~~~~~~~v~~~l~~lgL~~~~~~~ig~~ 242 (723)
.++.++|++|+..+++ .||+||+.+....... .. ....++.++++++.+++.+...... +
T Consensus 119 ~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~ 195 (305)
T PRK14264 119 VNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL--D 195 (305)
T ss_pred ccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh--c
Confidence 1246999999998887 5999999876432100 00 0112456888999999854332222 2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEE-EEE
Q 004932 243 CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI-CLL 321 (723)
Q Consensus 243 ~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v-~vL 321 (723)
..+++|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ .|||+++|++ ..+.++||++ ++|
T Consensus 196 ~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-~tiiivtH~~-~~i~~~~d~i~~~l 273 (305)
T PRK14264 196 DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTHNM-QQAARISDQTAVFL 273 (305)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CEEEEEEcCH-HHHHHhcCEEEEEe
Confidence 356799999999999999999999999999999999999999999999999874 8999999987 4788999997 578
Q ss_pred eCCeEEEEeChhHHH
Q 004932 322 SNGNTLFFGETLACL 336 (723)
Q Consensus 322 ~~G~iv~~G~~~~~~ 336 (723)
++|++++.|+++++.
T Consensus 274 ~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 274 TGGELVEYDDTDKIF 288 (305)
T ss_pred cCCEEEEeCCHHHHH
Confidence 999999999987764
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=335.12 Aligned_cols=214 Identities=20% Similarity=0.281 Sum_probs=179.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++|+++.|.. ....+|+|+|+.+++||+++|+|+||||||||+++|+|+++ . +|+|.++|.++..
T Consensus 2 ~i~~~nls~~~~~---~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~~ 74 (275)
T cd03289 2 QMTVKDLTAKYTE---GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQK 74 (275)
T ss_pred eEEEEEEEEEeCC---CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHHH
Confidence 4789999999952 23469999999999999999999999999999999999987 4 3999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (723)
.++.++|++|++.+++ .||+||+.... . ...+++.++++.+||.+..++.+++.. ....|||||||
T Consensus 75 lr~~i~~v~q~~~lf~-~tv~~nl~~~~-----~---~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~q 145 (275)
T cd03289 75 WRKAFGVIPQKVFIFS-GTFRKNLDPYG-----K---WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQ 145 (275)
T ss_pred HhhhEEEECCCcccch-hhHHHHhhhcc-----C---CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHH
Confidence 1346999999999987 49999995311 0 123467888999999988887664211 12459999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|++|||||+.+|+||+|||||++||+.+...+.+.|+++. +++|||+++|++ ..+. .||||++|++|++++.|++++
T Consensus 146 rl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~-~~i~-~~dri~vl~~G~i~~~g~~~~ 222 (275)
T cd03289 146 LMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRI-EAML-ECQRFLVIEENKVRQYDSIQK 222 (275)
T ss_pred HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCH-HHHH-hCCEEEEecCCeEeecCCHHH
Confidence 9999999999999999999999999999999999999875 489999988887 4565 499999999999999999998
Q ss_pred HHH
Q 004932 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
+..
T Consensus 223 l~~ 225 (275)
T cd03289 223 LLN 225 (275)
T ss_pred Hhh
Confidence 865
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=380.56 Aligned_cols=215 Identities=25% Similarity=0.326 Sum_probs=183.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (723)
..++++||++.|++ .++.+|+|+|+++++||.+||+||||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 476 ~~I~~~~vsf~y~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~---G~I~idg~~i~~~~~~ 549 (710)
T TIGR03796 476 GYVELRNITFGYSP---LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS---GEILFDGIPREEIPRE 549 (710)
T ss_pred CeEEEEEEEEecCC---CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEeHHHCCHH
Confidence 36899999999963 23579999999999999999999999999999999999999975 999999987532
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHH
Q 004932 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (723)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGer 253 (723)
.++.++||+|++.+|+ .|++|||.++ .+. ..++++.++++..++.+..++++.|.+ ....||||||
T Consensus 550 ~lr~~i~~v~Q~~~lf~-gTi~eNi~l~----~~~---~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQr 621 (710)
T TIGR03796 550 VLANSVAMVDQDIFLFE-GTVRDNLTLW----DPT---IPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQR 621 (710)
T ss_pred HHHhheeEEecCChhhh-ccHHHHhhCC----CCC---CCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHH
Confidence 2467999999999985 5999999652 111 245678889999999887766554332 3467999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||++|||||+++|++||||||||+||+.++.++.+.|++ .++|+|+++|+++ ....||+|++|++|++++.|+.+
T Consensus 622 QRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G~~~ 696 (710)
T TIGR03796 622 QRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRGTHE 696 (710)
T ss_pred HHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEecCHH
Confidence 999999999999999999999999999999999999986 4899999999984 34669999999999999999998
Q ss_pred HHHH
Q 004932 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++.+
T Consensus 697 ~Ll~ 700 (710)
T TIGR03796 697 ELWA 700 (710)
T ss_pred HHHH
Confidence 8764
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=351.56 Aligned_cols=216 Identities=26% Similarity=0.362 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++||+++|++. ..++|+|+|+++++||.+||+|+||||||||+++|+|-.+|++ |+|.+||.++...
T Consensus 336 ~l~~~~vsF~y~~~---~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~---G~i~~~g~~~~~l~~~~ 409 (573)
T COG4987 336 ALELRNVSFTYPGQ---QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQ---GSITLNGVEIASLDEQA 409 (573)
T ss_pred eeeeccceeecCCC---ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCC---CeeeECCcChhhCChhh
Confidence 68999999999752 3479999999999999999999999999999999999999985 9999999875322
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHHHH
Q 004932 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERR 254 (723)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerq 254 (723)
++.++++.|..++|.. |+++||..+. | ...++.+.++++++||++.....+.| ++..+.|||||||
T Consensus 410 ~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~----~---~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~r 481 (573)
T COG4987 410 LRETISVLTQRVHLFSG-TLRDNLRLAN----P---DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR 481 (573)
T ss_pred HHHHHhhhccchHHHHH-HHHHHHhhcC----C---CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHH
Confidence 3468999999999864 9999996531 2 23567789999999999876655321 2345789999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|++|||+|++|.++++|||||.|||+.+..+++++|.+-.+ |+|+|+++|+... .+.||||++|++|++++.|...+
T Consensus 482 RLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~--le~~drIivl~~Gkiie~G~~~~ 558 (573)
T COG4987 482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDNGKIIEEGTHAE 558 (573)
T ss_pred HHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCEEEEEECCeeeecCCHHh
Confidence 99999999999999999999999999999999999998765 8999999999753 57899999999999999999988
Q ss_pred HHH
Q 004932 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
+..
T Consensus 559 Ll~ 561 (573)
T COG4987 559 LLA 561 (573)
T ss_pred hhc
Confidence 764
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=365.04 Aligned_cols=218 Identities=22% Similarity=0.258 Sum_probs=182.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEEC----------
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVN---------- 173 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~--~~~~~~~G~I~i~---------- 173 (723)
++++|+++.|. ++.+|+|+|+.+++||+++|+||||||||||||+|+|++ +|+. |+|.++
T Consensus 1 l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~---G~i~~~~~~~~~~~~~ 72 (520)
T TIGR03269 1 IEVKNLTKKFD-----GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTS---GRIIYHVALCEKCGYV 72 (520)
T ss_pred CEEEEEEEEEC-----CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCc---eEEEEecccccccccc
Confidence 46899999983 346999999999999999999999999999999999996 5654 999997
Q ss_pred -------------CEeC--------C-------CCCceEEEEcCC-CccCCCCCHHHHHHHHHHhcCCCccchHHHHHHH
Q 004932 174 -------------GAKS--------E-------MPYGSYGFVERE-TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVED 224 (723)
Q Consensus 174 -------------G~~~--------~-------~~~~~~~yv~Q~-~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~ 224 (723)
|.++ . ..++.++|++|+ +.+++.+||+||+.+...... ....+.++++.+
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~ 151 (520)
T TIGR03269 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIG-YEGKEAVGRAVD 151 (520)
T ss_pred ccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 2211 0 012358999997 678888999999988654321 111123567899
Q ss_pred HHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEE
Q 004932 225 AIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFT 303 (723)
Q Consensus 225 ~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t 303 (723)
+++.+||.+..++.+ .+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|+|||++
T Consensus 152 ~l~~~gl~~~~~~~~------~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviiv 225 (520)
T TIGR03269 152 LIEMVQLSHRITHIA------RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT 225 (520)
T ss_pred HHHHcCChhhhhcCc------ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE
Confidence 999999988877754 49999999999999999999999999999999999999999999999975 58999998
Q ss_pred EeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHh
Q 004932 304 INQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (723)
Q Consensus 304 ~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (723)
+|++ ..+.++||++++|++|++++.|+++++.+.+
T Consensus 226 tHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 226 SHWP-EVIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred eCCH-HHHHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 8887 4778899999999999999999988876543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=317.92 Aligned_cols=193 Identities=25% Similarity=0.310 Sum_probs=164.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (723)
++++|+++.+. ++.+|+|+|+.+++||+++|+||||||||||+++|+|+++|+. |+|.++|++... ..
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (198)
T TIGR01189 1 LAARNLACSRG-----ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDS---GEVRWNGTALAEQRDEPH 72 (198)
T ss_pred CEEEEEEEEEC-----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCEEcccchHHhh
Confidence 36789999884 3579999999999999999999999999999999999998874 999999986432 12
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.++|++|++.+++.+|+.||+.+...... ..+++++++++.+++.+..++.+ ..|||||||||+||||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~la~a 141 (198)
T TIGR01189 73 RNILYLGHLPGLKPELSALENLHFWAAIHG-----GAQRTIEDALAAVGLTGFEDLPA------AQLSAGQQRRLALARL 141 (198)
T ss_pred hheEEeccCcccccCCcHHHHHHHHHHHcC-----CcHHHHHHHHHHcCCHHHhcCCh------hhcCHHHHHHHHHHHH
Confidence 468999999989888999999987543221 12346788999999998877755 4999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEE
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICL 320 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~v 320 (723)
|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++.. -.+++++.
T Consensus 142 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 142 WLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 999999999999999999999999999999998889999999999853 24677664
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=312.21 Aligned_cols=169 Identities=29% Similarity=0.434 Sum_probs=152.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (723)
++++|+++.+. .+.+|+|+|+++.+||+++|+||||||||||+++|+|+.+|.. |+|.++|++... .+
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (173)
T cd03230 1 IEVRNLSKRYG-----KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDS---GEIKVLGKDIKKEPEEVK 72 (173)
T ss_pred CEEEEEEEEEC-----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEcccchHhhh
Confidence 36899999884 2469999999999999999999999999999999999998864 999999987532 13
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.++|++|++.+++.+|+.||+. ||||||||++||||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~~~-------------------------------------------LS~G~~qrv~lara 109 (173)
T cd03230 73 RRIGYLPEEPSLYENLTVRENLK-------------------------------------------LSGGMKQRLALAQA 109 (173)
T ss_pred ccEEEEecCCccccCCcHHHHhh-------------------------------------------cCHHHHHHHHHHHH
Confidence 46999999999999899999872 99999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++ .++.++||++++|++|++
T Consensus 110 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 110 LLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999999999999987789999988887 478889999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=368.38 Aligned_cols=216 Identities=28% Similarity=0.413 Sum_probs=183.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++|+++.|++ ++++|+|+|++++|||.+||+||||||||||+++|+|+++|+. |+|.+||.++...
T Consensus 327 ~~I~f~~vsf~y~~----~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~---G~I~idg~dI~~i~~~ 399 (567)
T COG1132 327 GSIEFENVSFSYPG----KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTS---GEILIDGIDIRDISLD 399 (567)
T ss_pred CeEEEEEEEEEcCC----CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---CeEEECCEehhhcCHH
Confidence 35999999999952 4689999999999999999999999999999999999999864 9999999886432
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCC-----CCCCCCCHHHH
Q 004932 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGER 253 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGer 253 (723)
++.++||+|++.+|. -||+||+.++. +. ..++++.++++..++.+...+.+.|. +....||||||
T Consensus 400 ~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~----~~---at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQr 471 (567)
T COG1132 400 SLRKRIGIVSQDPLLFS-GTIRENIALGR----PD---ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQR 471 (567)
T ss_pred HHHHhccEEcccceeec-ccHHHHHhcCC----CC---CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHH
Confidence 457999999999997 79999997742 11 23466778888777766544433222 23457999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||++||||++++|++|+||||||+||+.+...|.+.++++. +++|+++++|.++ .+.+ ||+|++|++|++++.|+.+
T Consensus 472 QrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls-ti~~-aD~IiVl~~G~i~e~G~h~ 548 (567)
T COG1132 472 QRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS-TIKN-ADRIIVLDNGRIVERGTHE 548 (567)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh-HHHh-CCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999887 5678888899984 5555 9999999999999999999
Q ss_pred HHHH
Q 004932 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++..
T Consensus 549 eLl~ 552 (567)
T COG1132 549 ELLA 552 (567)
T ss_pred HHHH
Confidence 8865
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=323.15 Aligned_cols=206 Identities=19% Similarity=0.247 Sum_probs=169.3
Q ss_pred EEEEeEEEEEeccccc--ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC--CE--eCCC
Q 004932 106 VVWKDLTVTIKGKRRY--SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN--GA--KSEM 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~--~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~--G~--~~~~ 179 (723)
++++|+++.|...++. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++ |+ +...
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~~~g~~~~~~~ 78 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDS---GRILVRHEGAWVDLAQ 78 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEEecCCCccchhh
Confidence 6789999999532111 2469999999999999999999999999999999999998875 999998 42 2210
Q ss_pred ---------CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchH-hhhhhcCCCCCCCCC
Q 004932 180 ---------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLP 249 (723)
Q Consensus 180 ---------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~~LS 249 (723)
..+.++|++|++.+++.+||.|++.+..... ........+++.++++.+||.+. .++. +.+||
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~LS 151 (224)
T TIGR02324 79 ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER-GVPREAARARARELLARLNIPERLWHLP------PATFS 151 (224)
T ss_pred cCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhhhCC------cccCC
Confidence 1235899999999999999999998764322 11111234567889999999763 4543 45999
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 004932 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (723)
Q Consensus 250 GGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (723)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++ ..+.++||+++.+.
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceeEecC
Confidence 9999999999999999999999999999999999999999999988899999999985 56778999998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=314.36 Aligned_cols=217 Identities=24% Similarity=0.379 Sum_probs=190.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (723)
++++||+++| +.+.+|+++|..+++|.+++|+|||||||||||.+++.+++.++ |+|.++|.+....
T Consensus 2 I~i~nv~K~y-----~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~---G~i~i~g~~~~~~~s~~L 73 (252)
T COG4604 2 ITIENVSKSY-----GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDS---GEITIDGLELTSTPSKEL 73 (252)
T ss_pred eeehhhhHhh-----CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccC---ceEEEeeeecccCChHHH
Confidence 5789999998 45789999999999999999999999999999999999999875 9999999876432
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHH
Q 004932 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (723)
.+.++..-|+..+...+||+|.+.|+..-.-.+ ...+.+..++++++.++|++..|+.+. +||||||||.-||
T Consensus 74 Ak~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd------~LSGGQrQRAfIA 147 (252)
T COG4604 74 AKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLD------ELSGGQRQRAFIA 147 (252)
T ss_pred HHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHH------hcccchhhhhhhh
Confidence 245778889999999999999998863211111 122356789999999999999999775 9999999999999
Q ss_pred HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 260 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
..|+++.+.++||||.++||...+.++|+.|+++++ -|+|||++.|+.. .+..++|+|+-|++|+++..|+++++.+
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN-fAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN-FASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc-HHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 999999999999999999999999999999999995 5999999999874 7888999999999999999999999864
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=366.95 Aligned_cols=216 Identities=25% Similarity=0.368 Sum_probs=184.9
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (723)
..++++|+++.|++. ++.+|+|+|+++++||.+||+||||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 337 ~~i~~~~v~f~y~~~---~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~---G~I~i~g~~i~~~~~~ 410 (574)
T PRK11160 337 VSLTLNNVSFTYPDQ---PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQ---GEILLNGQPIADYSEA 410 (574)
T ss_pred CeEEEEEEEEECCCC---CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEEhhhCCHH
Confidence 369999999999531 2469999999999999999999999999999999999999875 999999987542
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHH
Q 004932 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (723)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGer 253 (723)
.++.++||+|++.+|+ .|++||+.++. + ...++.+.++++.+++.+..++ +.|.+ ....||||||
T Consensus 411 ~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~---~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqr 481 (574)
T PRK11160 411 ALRQAISVVSQRVHLFS-ATLRDNLLLAA----P---NASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQ 481 (574)
T ss_pred HHHhheeEEcccchhhc-ccHHHHhhcCC----C---ccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHH
Confidence 1356999999999986 59999997642 1 1245678999999999987665 44333 3467999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|+++ .+ ..||+|++|++|++++.|+.+
T Consensus 482 qRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~-~~-~~~d~i~~l~~G~i~~~g~~~ 558 (574)
T PRK11160 482 RRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT-GL-EQFDRICVMDNGQIIEQGTHQ 558 (574)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh-HH-HhCCEEEEEeCCeEEEeCCHH
Confidence 99999999999999999999999999999999999999986 4789999999985 44 569999999999999999988
Q ss_pred HHHH
Q 004932 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++.+
T Consensus 559 ~l~~ 562 (574)
T PRK11160 559 ELLA 562 (574)
T ss_pred HHHh
Confidence 7754
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=317.81 Aligned_cols=187 Identities=24% Similarity=0.312 Sum_probs=160.0
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCCC---
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~--~~~~~~~G~I~i~G~~~~~~--- 180 (723)
++++|+++.+. ++.+|+|+|+.+++||+++|+|+||||||||+++|+|+. +|+ +|+|.++|++....
T Consensus 1 l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~---~G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 1 LEIKDLHVSVG-----GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT---EGEILFKGEDITDLPPE 72 (200)
T ss_pred CeEEEEEEEeC-----CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC---ccEEEECCEECCcCCHH
Confidence 36899999884 346999999999999999999999999999999999994 565 49999999875321
Q ss_pred ---CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004932 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
+..++|++|++.+++.+|+++++ ++ ....||||||||++
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~l--------------------------------~~------~~~~LS~G~~qrv~ 114 (200)
T cd03217 73 ERARLGIFLAFQYPPEIPGVKNADFL--------------------------------RY------VNEGFSGGEKKRNE 114 (200)
T ss_pred HHhhCcEEEeecChhhccCccHHHHH--------------------------------hh------ccccCCHHHHHHHH
Confidence 23499999999888888887765 01 11379999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHh-cCCEEEEEeCCeEEEEeChhHHH
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG-LFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~-~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|++. .+.+ +||++++|++|++++.|+.+ +.
T Consensus 115 laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~~-~~ 192 (200)
T cd03217 115 ILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDKE-LA 192 (200)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccHH-HH
Confidence 999999999999999999999999999999999999877899999999985 6666 79999999999999999544 55
Q ss_pred HHhh
Q 004932 337 QHFS 340 (723)
Q Consensus 337 ~~f~ 340 (723)
+.+.
T Consensus 193 ~~~~ 196 (200)
T cd03217 193 LEIE 196 (200)
T ss_pred hhhc
Confidence 4443
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=375.27 Aligned_cols=217 Identities=24% Similarity=0.392 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++||++.|++ ..+++|+|+|+++++||.+||+|+||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 463 ~I~~~~vsf~Y~~---~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~---G~I~idg~~l~~~~~~~ 536 (694)
T TIGR03375 463 EIEFRNVSFAYPG---QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTE---GSVLLDGVDIRQIDPAD 536 (694)
T ss_pred eEEEEEEEEEeCC---CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEEhhhCCHHH
Confidence 5899999999953 23569999999999999999999999999999999999999975 999999987542
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCC-----CCCCCCCHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERR 254 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerq 254 (723)
.++.++||+|++.+|+ .|++|||.++ .+ ...++++.++++..++.+..++++.|. +....|||||||
T Consensus 537 lr~~i~~v~Q~~~lf~-~TI~eNi~~~----~~---~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQ 608 (694)
T TIGR03375 537 LRRNIGYVPQDPRLFY-GTLRDNIALG----AP---YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQ 608 (694)
T ss_pred HHhccEEECCChhhhh-hhHHHHHhCC----CC---CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHH
Confidence 1357999999999986 4999999653 11 124567889999999987766654432 234679999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|++|||||+.+|++|+||||||+||+.++..+.+.|+++.+ ++|+|+++|+++ ..+.||+|++|++|++++.|+.++
T Consensus 609 RlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~e 685 (694)
T TIGR03375 609 AVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQ 685 (694)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHH
Confidence 99999999999999999999999999999999999999864 789999999984 457899999999999999999988
Q ss_pred HHHH
Q 004932 335 CLQH 338 (723)
Q Consensus 335 ~~~~ 338 (723)
+++.
T Consensus 686 Ll~~ 689 (694)
T TIGR03375 686 VLEA 689 (694)
T ss_pred HHHH
Confidence 7654
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=363.72 Aligned_cols=219 Identities=19% Similarity=0.275 Sum_probs=182.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-CCCceeEEEECCEeCCCC---
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH-SARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~-~~~~~G~I~i~G~~~~~~--- 180 (723)
.++++|+++.|... +++.+|+|+|+++++||+++|+||||||||||+|+|+|+++| ++ |+|.++|++....
T Consensus 259 ~l~~~~l~~~~~~~--~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~---G~i~~~g~~~~~~~~~ 333 (506)
T PRK13549 259 ILEVRNLTAWDPVN--PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWE---GEIFIDGKPVKIRNPQ 333 (506)
T ss_pred eEEEecCccccccc--cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCC---cEEEECCEECCCCCHH
Confidence 58999999887321 134699999999999999999999999999999999999874 54 9999999875321
Q ss_pred ---CceEEEEcCCC---ccCCCCCHHHHHHHHHHhcCCC----ccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCC
Q 004932 181 ---YGSYGFVERET---TLIGSLTVREYLYYSALLQLPG----FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLP 249 (723)
Q Consensus 181 ---~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~~----~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LS 249 (723)
.+.++|++|+. .+++.+||.||+.+........ .....+++++++++.+++. +..++.+ ..||
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LS 407 (506)
T PRK13549 334 QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI------ARLS 407 (506)
T ss_pred HHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc------ccCC
Confidence 23589999985 4788899999998753211110 1112345688999999996 5666655 4999
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 004932 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (723)
Q Consensus 250 GGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (723)
|||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++|+|||+++|++ .++.++||++++|++|+++..
T Consensus 408 gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~-~~~~~~~d~v~~l~~G~i~~~ 486 (506)
T PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSEL-PEVLGLSDRVLVMHEGKLKGD 486 (506)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999998899999988887 578899999999999999999
Q ss_pred eChhHH
Q 004932 330 GETLAC 335 (723)
Q Consensus 330 G~~~~~ 335 (723)
|+++++
T Consensus 487 ~~~~~~ 492 (506)
T PRK13549 487 LINHNL 492 (506)
T ss_pred eccccC
Confidence 987653
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=376.10 Aligned_cols=215 Identities=23% Similarity=0.340 Sum_probs=181.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++||++.|++. .++.+|+|+|++++|||.+||+||||||||||+|+|+|+++|++ |+|.+||++...
T Consensus 478 ~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~---G~I~idg~~i~~~~~~~ 552 (711)
T TIGR00958 478 LIEFQDVSFSYPNR--PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG---GQVLLDGVPLVQYDHHY 552 (711)
T ss_pred eEEEEEEEEECCCC--CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CEEEECCEEHHhcCHHH
Confidence 58999999999632 23579999999999999999999999999999999999999975 999999998542
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (723)
.++.++||+|++.+|+ .|++|||.++. +. ..++++.++++..++.+..++...|.+ ....|||||||
T Consensus 553 lr~~i~~v~Q~~~lF~-gTIreNI~~g~----~~---~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQ 624 (711)
T TIGR00958 553 LHRQVALVGQEPVLFS-GSVRENIAYGL----TD---TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQ 624 (711)
T ss_pred HHhhceEEecCccccc-cCHHHHHhcCC----CC---CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHH
Confidence 1357999999999986 59999997641 11 235678899999999887666543332 23579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|++|||||+++|+|||||||||+||+.++..+.+ .. ..+++|+|+++|+++ ..+.||+|++|++|++++.|+.++
T Consensus 625 RlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~e 699 (711)
T TIGR00958 625 RIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQ 699 (711)
T ss_pred HHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHH
Confidence 9999999999999999999999999999999988 22 236889999999984 356799999999999999999988
Q ss_pred HHH
Q 004932 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
+.+
T Consensus 700 L~~ 702 (711)
T TIGR00958 700 LME 702 (711)
T ss_pred HHh
Confidence 764
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=318.41 Aligned_cols=197 Identities=26% Similarity=0.331 Sum_probs=168.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCc
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYG 182 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~ 182 (723)
.++++|+++.|. ++.+|+|+|+.+++||+++|+||||||||||+++|+|+.+|++ |+|.++|++... .++
T Consensus 2 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 73 (207)
T PRK13539 2 MLEGEDLACVRG-----GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAA---GTIKLDGGDIDDPDVAE 73 (207)
T ss_pred EEEEEeEEEEEC-----CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEeCcchhhHh
Confidence 478999999984 3469999999999999999999999999999999999998874 999999986432 234
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004932 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
.++|++|++.+++.+||+||+.+..... . ...++++++++.+||.+..++.+ +.||||||||++|||||
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~--~---~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~la~al 142 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFL--G---GEELDIAAALEAVGLAPLAHLPF------GYLSAGQKRRVALARLL 142 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhc--C---CcHHHHHHHHHHcCCHHHHcCCh------hhcCHHHHHHHHHHHHH
Confidence 6899999988888999999997754322 1 12345889999999987766644 49999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 004932 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (723)
+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++. ++.. |+++.+..
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~--~~~~~~~~ 200 (207)
T PRK13539 143 VSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLPG--ARELDLGP 200 (207)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhcc--CcEEeecC
Confidence 9999999999999999999999999999999888999999999974 5554 88887743
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=349.08 Aligned_cols=214 Identities=22% Similarity=0.386 Sum_probs=187.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++|++++|. ..++|+||||.+++||++||+|.||||||||+|+|+|.++|++ |+|.++|++....
T Consensus 7 ~ll~~~~i~K~Fg-----gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~---G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 7 PLLELRGISKSFG-----GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDS---GEILIDGKPVAFSSPR 78 (500)
T ss_pred ceeeeecceEEcC-----CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCC---ceEEECCEEccCCCHH
Confidence 3688999999994 5689999999999999999999999999999999999999985 9999999975421
Q ss_pred ---CceEEEEcCCCccCCCCCHHHHHHHHHHhcCC-C--ccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHH
Q 004932 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLP-G--FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (723)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~--~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (723)
...|+.|+|+..+.|++||.||+.++.....+ . +..+.+++..++|+.+++....++.++ +||+||||
T Consensus 79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~------~LsiaqrQ 152 (500)
T COG1129 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG------DLSIAQRQ 152 (500)
T ss_pred HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh------hCCHHHHH
Confidence 24689999999999999999999876443221 1 112245678899999999644666665 99999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
.|+|||||..+++|||||||||.|+......+.+.+++|+++|.++|+++|.. .+++++||||.||++|+.+..++.
T Consensus 153 ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl-~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 153 MVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRL-DEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcH-HHHHHhcCEEEEEeCCEEeeeccc
Confidence 99999999999999999999999999999999999999999999999988875 699999999999999999998883
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=322.52 Aligned_cols=209 Identities=22% Similarity=0.345 Sum_probs=173.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++|+++.+.. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~---~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 75 (221)
T cd03244 2 DIEFKNVSLRYRP---NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS---GSILIDGVDISKIGLHD 75 (221)
T ss_pred cEEEEEEEEecCC---CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---CEEEECCEEhHhCCHHH
Confidence 3789999999852 12469999999999999999999999999999999999998875 999999987431
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERR 254 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerq 254 (723)
..+.++|++|++.+++ .||+||+.+.. . ...+++.+.++.+++.+..++...+ +..+..|||||||
T Consensus 76 ~~~~i~~~~q~~~l~~-~tv~enl~~~~-----~---~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~q 146 (221)
T cd03244 76 LRSRISIIPQDPVLFS-GTIRSNLDPFG-----E---YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQ 146 (221)
T ss_pred HhhhEEEECCCCcccc-chHHHHhCcCC-----C---CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHH
Confidence 1346999999998776 59999985321 1 1234567788888887766542111 2356799999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|++. ++. .||++++|++|++++.|+
T Consensus 147 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 147 LLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TII-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HHh-hCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999865 689999899874 555 499999999999998876
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=346.92 Aligned_cols=214 Identities=21% Similarity=0.252 Sum_probs=179.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (723)
..+.++||++.+.++ ..+.+|+|+||.+++||+++|+|||||||||||++|+|+++|+. |+|.++|.+.
T Consensus 20 ~mL~lknL~~~~~~~--~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~s---GeI~I~G~~~------ 88 (549)
T PRK13545 20 PFDKLKDLFFRSKDG--EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNK---GTVDIKGSAA------ 88 (549)
T ss_pred ceeEEEEEEEecCCC--ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCc---eEEEECCEee------
Confidence 468899998887432 22469999999999999999999999999999999999998875 9999999752
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 004932 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (723)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~ 263 (723)
++.+...+.+.+|++||+.+...... ....+..++++++++.++|.+..++.+ +.||||||||++|||||+
T Consensus 89 --~i~~~~~l~~~lTV~EnL~l~~~~~~-~~~~e~~e~i~elLe~lgL~~~ld~~~------~~LSGGQrQRVaLArAL~ 159 (549)
T PRK13545 89 --LIAISSGLNGQLTGIENIELKGLMMG-LTKEKIKEIIPEIIEFADIGKFIYQPV------KTYSSGMKSRLGFAISVH 159 (549)
T ss_pred --eEEeccccCCCCcHHHHHHhhhhhcC-CCHHHHHHHHHHHHHHcCChhHhhCCc------ccCCHHHHHHHHHHHHHH
Confidence 12223456677899999987543221 111123456788999999988887755 499999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHH
Q 004932 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (723)
Q Consensus 264 ~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (723)
.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++...
T Consensus 160 ~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 160 INPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 99999999999999999999999999999988899999998887 478899999999999999999999887654
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=324.43 Aligned_cols=193 Identities=26% Similarity=0.387 Sum_probs=169.9
Q ss_pred ceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC---------CCCCceEEEEcCCCccCCCCC
Q 004932 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS---------EMPYGSYGFVERETTLIGSLT 198 (723)
Q Consensus 128 ~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~---------~~~~~~~~yv~Q~~~l~~~lT 198 (723)
++++..+.-.++||-|+||||||||+|+|+|+.+|+. |.|.+||... ...++++|||+||..|||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPde---G~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDE---GRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccc---cEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 4455555547999999999999999999999999985 9999999742 112467999999999999999
Q ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 004932 199 VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 278 (723)
Q Consensus 199 V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgL 278 (723)
|+.||.|+.... .....+++++.+|++++.++.+ ..|||||||||+|+|||+++|++|+||||.+.|
T Consensus 93 VrgNL~YG~~~~-------~~~~fd~iv~lLGI~hLL~R~P------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 93 VRGNLRYGMWKS-------MRAQFDQLVALLGIEHLLDRYP------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred Eecchhhhhccc-------chHhHHHHHHHhCcHHHHhhCC------CccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 999999975321 3456789999999999999854 599999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 279 DSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 279 D~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|-.-+.+++-.|.+|+++ +..|+.++|.. +|+.+++|+|++|++||+..+|+.+++..
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 999999999999999965 78889888876 69999999999999999999999999864
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=365.43 Aligned_cols=215 Identities=23% Similarity=0.338 Sum_probs=182.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++|+++.|++ ++.+|+|+|++++|||.++|+|+||||||||+|+|+|+++|.. |+|.+||.+....
T Consensus 334 ~I~~~~vsf~y~~----~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~---G~I~i~g~~i~~~~~~~ 406 (588)
T PRK13657 334 AVEFDDVSFSYDN----SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQS---GRILIDGTDIRTVTRAS 406 (588)
T ss_pred eEEEEEEEEEeCC----CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECCEEhhhCCHHH
Confidence 5899999999952 2469999999999999999999999999999999999999975 9999999875431
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHHH
Q 004932 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (723)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (723)
++.++||+|++.+|+ .|++||+.++. +. ..++++.++++.+++.+..++...|.+ ..+.|||||||
T Consensus 407 ~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~---~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~Q 478 (588)
T PRK13657 407 LRRNIAVVFQDAGLFN-RSIEDNIRVGR----PD---ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQ 478 (588)
T ss_pred HHhheEEEecCccccc-ccHHHHHhcCC----CC---CCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHH
Confidence 357999999999986 59999997631 11 235568888999998876655433222 23569999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|++|||||+.+|++|+||||||+||+.++..+.+.|+++. +++|+|+++|++. ..+.+|+|++|++|++++.|+.++
T Consensus 479 RialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~ 555 (588)
T PRK13657 479 RLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDE 555 (588)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999875 4789999999984 457899999999999999999877
Q ss_pred HHH
Q 004932 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
..+
T Consensus 556 l~~ 558 (588)
T PRK13657 556 LVA 558 (588)
T ss_pred HHH
Confidence 653
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=374.87 Aligned_cols=215 Identities=22% Similarity=0.311 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++||++.|+ .++++|+|+|+++++||.+||+||||||||||+|+|+|+++|++ |+|.+||.++..
T Consensus 473 ~I~~~~vsf~y~----~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~---G~I~idg~~i~~~~~~~ 545 (708)
T TIGR01193 473 DIVINDVSYSYG----YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS---GEILLNGFSLKDIDRHT 545 (708)
T ss_pred cEEEEEEEEEcC----CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCC---cEEEECCEEHHHcCHHH
Confidence 589999999995 23579999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (723)
.++.++||+|++.+|+. |++|||.++. .+ ...++++.++++..++.+..++.+.|.+ ....|||||||
T Consensus 546 lr~~i~~v~Q~~~lf~g-TI~eNi~l~~---~~---~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQ 618 (708)
T TIGR01193 546 LRQFINYLPQEPYIFSG-SILENLLLGA---KE---NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQ 618 (708)
T ss_pred HHHheEEEecCceehhH-HHHHHHhccC---CC---CCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHH
Confidence 23579999999999865 9999997641 11 1235668889999999876655443322 34679999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|++|||||+++|++||||||||+||+.++..+++.|+++ +|+|+|+++|+++ ..+.||+|++|++|++++.|+.++
T Consensus 619 RialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~ 694 (708)
T TIGR01193 619 RIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDE 694 (708)
T ss_pred HHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999985 4789999999984 457899999999999999999988
Q ss_pred HHH
Q 004932 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
+.+
T Consensus 695 L~~ 697 (708)
T TIGR01193 695 LLD 697 (708)
T ss_pred HHh
Confidence 754
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=359.61 Aligned_cols=208 Identities=22% Similarity=0.242 Sum_probs=178.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C---
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P--- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~-~--- 180 (723)
.++++|+++.|. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++ |+|.++|.+... .
T Consensus 3 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~---G~i~~~~~~~~~~~~~~ 74 (490)
T PRK10938 3 SLQISQGTFRLS-----DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLS---GERQSQFSHITRLSFEQ 74 (490)
T ss_pred eEEEEeEEEEcC-----CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---ceEEECCcccccCCHHH
Confidence 488999999984 3469999999999999999999999999999999999998875 999999875421 1
Q ss_pred -CceEEEEcCCCcc--C------CCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHH
Q 004932 181 -YGSYGFVERETTL--I------GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (723)
Q Consensus 181 -~~~~~yv~Q~~~l--~------~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGG 251 (723)
.+.++|++|++.+ + ..+||+|++.+. ...+++++++++.+||.+..++.++ +||||
T Consensus 75 ~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG 139 (490)
T PRK10938 75 LQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE---------VKDPARCEQLAQQFGITALLDRRFK------YLSTG 139 (490)
T ss_pred HHHHhceeccCcchhhcccchhhccccHHHhcccc---------hhHHHHHHHHHHHcCCHhhhhCCcc------cCCHH
Confidence 2348999998542 1 147888887431 1234568899999999888877554 99999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004932 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 252 erqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
|||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ ..+.++||++++|++|+++..|+
T Consensus 140 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~ 218 (490)
T PRK10938 140 ETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRF-DEIPDFVQFAGVLADCTLAETGE 218 (490)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999988899999988887 57889999999999999999999
Q ss_pred hhHHH
Q 004932 332 TLACL 336 (723)
Q Consensus 332 ~~~~~ 336 (723)
++++.
T Consensus 219 ~~~~~ 223 (490)
T PRK10938 219 REEIL 223 (490)
T ss_pred HHHHh
Confidence 87754
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=323.27 Aligned_cols=195 Identities=30% Similarity=0.438 Sum_probs=163.9
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccC--CCCCHHHHHHHHHH
Q 004932 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI--GSLTVREYLYYSAL 208 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~--~~lTV~E~l~~~~~ 208 (723)
+.+++||+++|+|+||||||||+++|+|+.+|++ |+|.++|++.....+.++|++|++.++ ..+|+.||+.+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAK---GTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 3577999999999999999999999999998875 999999987533345699999998764 34799999977532
Q ss_pred hc---CCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 004932 209 LQ---LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285 (723)
Q Consensus 209 ~~---~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~ 285 (723)
.. ........++++.++++.+++.+..++.+ .+|||||||||+|||+|+.+|++|||||||+|||+.++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPV------GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCCh------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 11 00011123456889999999988777654 4899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 286 MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 286 i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
+.+.|++++++|+|+|+++|++. ++.++||+++++ +|++++.|+++++.
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 99999999878999999999874 788999999999 89999999988764
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=361.54 Aligned_cols=211 Identities=18% Similarity=0.272 Sum_probs=178.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++|+++.+ +.+|+|+|+.+++||+++|+||||||||||+|+|+|+++|++ |+|.++|++....
T Consensus 265 ~l~~~~l~~~~-------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~---G~I~~~g~~~~~~~~~~ 334 (510)
T PRK09700 265 VFEVRNVTSRD-------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAG---GEIRLNGKDISPRSPLD 334 (510)
T ss_pred EEEEeCccccC-------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---CeEEECCEECCCCCHHH
Confidence 58999998753 138999999999999999999999999999999999998875 9999999875321
Q ss_pred --CceEEEEcCC---CccCCCCCHHHHHHHHHHhc---C----CC-ccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCC
Q 004932 181 --YGSYGFVERE---TTLIGSLTVREYLYYSALLQ---L----PG-FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMK 246 (723)
Q Consensus 181 --~~~~~yv~Q~---~~l~~~lTV~E~l~~~~~~~---~----~~-~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~ 246 (723)
++.++|++|+ ..+++.+||.||+.+....+ . .. .....+++++++++.++|. +..++.+ .
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~ 408 (510)
T PRK09700 335 AVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI------T 408 (510)
T ss_pred HHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc------c
Confidence 2468999998 46888999999997653211 0 00 0111235678999999996 6677655 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004932 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 247 ~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
+|||||||||+|||+|+.+|+||||||||+|||+.++..+++.|++++++|.|||+++|++ .++.++||++++|++|++
T Consensus 409 ~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~i 487 (510)
T PRK09700 409 ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL-PEIITVCDRIAVFCEGRL 487 (510)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999988899999998887 578899999999999999
Q ss_pred EEEeCh
Q 004932 327 LFFGET 332 (723)
Q Consensus 327 v~~G~~ 332 (723)
++.++.
T Consensus 488 ~~~~~~ 493 (510)
T PRK09700 488 TQILTN 493 (510)
T ss_pred EEEecC
Confidence 988865
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=310.60 Aligned_cols=170 Identities=31% Similarity=0.471 Sum_probs=151.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (723)
++++|+++.+. ++.+++|+|+++++||+++|+||||||||||+|+|+|++++++ |+|.++|++...
T Consensus 1 i~~~~l~~~~~-----~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (178)
T cd03229 1 LELKNVSKRYG-----QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDS---GSILIDGEDLTDLEDELP 72 (178)
T ss_pred CEEEEEEEEEC-----CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccchhHH
Confidence 36899999884 3469999999999999999999999999999999999998864 999999986432
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
..+.++|++|++.+++.+|++||+.+. ||||||||++|
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~-----------------------------------------lS~G~~qr~~l 111 (178)
T cd03229 73 PLRRRIGMVFQDFALFPHLTVLENIALG-----------------------------------------LSGGQQQRVAL 111 (178)
T ss_pred HHhhcEEEEecCCccCCCCCHHHheeec-----------------------------------------CCHHHHHHHHH
Confidence 124699999999998889999987421 99999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (723)
||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++.++||++++|++|+
T Consensus 112 a~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 112 ARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 99999999999999999999999999999999999887 89999988887 47788999999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=361.49 Aligned_cols=217 Identities=25% Similarity=0.365 Sum_probs=181.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++|+++.|++ .++.+|+|+|+++++||.++|+||||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 316 ~i~~~~v~~~y~~---~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g~~i~~~~~~~ 389 (544)
T TIGR01842 316 HLSVENVTIVPPG---GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTS---GSVRLDGADLKQWDRET 389 (544)
T ss_pred eEEEEEEEEEcCC---CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEehhhCCHHH
Confidence 5899999999953 23579999999999999999999999999999999999999875 999999987542
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCC-----CCCCCCCHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERR 254 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerq 254 (723)
.++.++||+|++.+++. |++||+.+.. +. ..++.+.++++..++.+..++...|. +....|||||||
T Consensus 390 ~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~~---~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~q 461 (544)
T TIGR01842 390 FGKHIGYLPQDVELFPG-TVAENIARFG----EN---ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQ 461 (544)
T ss_pred HhhheEEecCCcccccc-cHHHHHhccC----CC---CCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHH
Confidence 13579999999999875 9999996421 11 13445667777777776655443221 235689999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|++|||||+++|++|+|||||+|||+.++..+.+.|+++.++|+|+|+++|++. ..+.||+|++|++|++++.|+.++
T Consensus 462 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~ 539 (544)
T TIGR01842 462 RIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDE 539 (544)
T ss_pred HHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHH
Confidence 999999999999999999999999999999999999999767899999999984 356799999999999999999877
Q ss_pred HHH
Q 004932 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
+.+
T Consensus 540 l~~ 542 (544)
T TIGR01842 540 VLA 542 (544)
T ss_pred Hhh
Confidence 643
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=310.82 Aligned_cols=170 Identities=26% Similarity=0.402 Sum_probs=152.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++|+++.+ +|+++|+.+++||+++|+||||||||||+++|+|+++|++ |+|.++|++....
T Consensus 4 ~l~~~~l~~~~---------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 71 (182)
T cd03215 4 VLEVRGLSVKG---------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPAS---GEITLDGKPVTRRSPRD 71 (182)
T ss_pred EEEEeccEEEe---------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCccCHHH
Confidence 58899998865 8999999999999999999999999999999999999875 9999999875321
Q ss_pred --CceEEEEcCCC---ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004932 181 --YGSYGFVERET---TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 181 --~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
++.++|++|+. .+++.+|++||+.+... ||||||||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------------------LS~G~~qr 112 (182)
T cd03215 72 AIRAGIAYVPEDRKREGLVLDLSVAENIALSSL---------------------------------------LSGGNQQK 112 (182)
T ss_pred HHhCCeEEecCCcccCcccCCCcHHHHHHHHhh---------------------------------------cCHHHHHH
Confidence 24699999984 57888999999965310 99999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|++ .++.++||++++|++|++
T Consensus 113 l~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 113 VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999999999999999987789999988887 478899999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=323.44 Aligned_cols=216 Identities=19% Similarity=0.241 Sum_probs=175.9
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (723)
..++++|+++.++. ..+.+|+|+|+.+++||+++|+|+||||||||+++|+|+++|.. |+|.++|++...
T Consensus 18 ~~i~~~~l~~~~~~---~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~i~g~~i~~~~~~ 91 (257)
T cd03288 18 GEIKIHDLCVRYEN---NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFD---GKIVIDGIDISKLPLH 91 (257)
T ss_pred ceEEEEEEEEEeCC---CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCC---CeEEECCEEhhhCCHH
Confidence 46899999999852 12469999999999999999999999999999999999998874 999999987532
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHHH
Q 004932 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGER 253 (723)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGer 253 (723)
..+.++|++|++.+++ .|++||+.... . ...+.+.++++.+++.+..+....+ +..++.||||||
T Consensus 92 ~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~--~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~ 162 (257)
T cd03288 92 TLRSRLSIILQDPILFS-GSIRFNLDPEC------K--CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQR 162 (257)
T ss_pred HHhhhEEEECCCCcccc-cHHHHhcCcCC------C--CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHH
Confidence 1346899999998876 59999984210 0 1123455666666776655544311 124568999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++. ++.|+|+++|++. .+.. |||+++|++|++++.|+++
T Consensus 163 qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~-~dri~~l~~G~i~~~g~~~ 239 (257)
T cd03288 163 QLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TILD-ADLVLVLSRGILVECDTPE 239 (257)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HHHh-CCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999975 4899999999985 5554 9999999999999999988
Q ss_pred HHHH
Q 004932 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++.+
T Consensus 240 ~~~~ 243 (257)
T cd03288 240 NLLA 243 (257)
T ss_pred HHHh
Confidence 7654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-38 Score=362.48 Aligned_cols=217 Identities=24% Similarity=0.336 Sum_probs=183.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++||++.|++. ++.+|+|+|+++++||.++|+|+||||||||+|+|+|+.+|++ |+|.+||.+...
T Consensus 330 ~i~~~~v~f~y~~~---~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~---G~I~i~g~~i~~~~~~~ 403 (571)
T TIGR02203 330 DVEFRNVTFRYPGR---DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDS---GQILLDGHDLADYTLAS 403 (571)
T ss_pred eEEEEEEEEEcCCC---CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CeEEECCEeHHhcCHHH
Confidence 59999999999531 3469999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (723)
.++.++|++|++.+|+ .|++|||.++. +. ...+++++++++.+|+.+..+++..|.+ ....|||||||
T Consensus 404 ~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~--~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQ 476 (571)
T TIGR02203 404 LRRQVALVSQDVVLFN-DTIANNIAYGR----TE--QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQ 476 (571)
T ss_pred HHhhceEEccCccccc-ccHHHHHhcCC----CC--CCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 1356999999999885 49999997531 11 1245678899999999877666543222 23579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|++||||++.+|+||+||||||+||+.+++.+++.|+++. +++|+|+++|++ ...+.||+|++|++|+++..|+.++
T Consensus 477 RiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~g~~~~ 553 (571)
T TIGR02203 477 RLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRL--STIEKADRIVVMDDGRIVERGTHNE 553 (571)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhh--HHHHhCCEEEEEeCCEEEeeCCHHH
Confidence 9999999999999999999999999999999999999885 468999999997 4568899999999999999999888
Q ss_pred HHH
Q 004932 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
..+
T Consensus 554 l~~ 556 (571)
T TIGR02203 554 LLA 556 (571)
T ss_pred HHH
Confidence 753
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=312.97 Aligned_cols=192 Identities=22% Similarity=0.300 Sum_probs=164.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----C
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----Y 181 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~----~ 181 (723)
+.++|+++.+. ++++|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|++.... +
T Consensus 2 l~~~~l~~~~~-----~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 2 LDVIELDFDYH-----DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEK---GEILFERQSIKKDLCTYQ 73 (200)
T ss_pred EEEEEEEEEeC-----CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eeEEECCCccccCHHHHH
Confidence 67899999984 3569999999999999999999999999999999999998875 9999999865321 2
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.++|++|+..+++.+||+||+.+.... . .....++++++.+++.+..++.++ +||||||||++||||
T Consensus 74 ~~i~~~~q~~~~~~~~tv~~~~~~~~~~--~----~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~~rv~lara 141 (200)
T PRK13540 74 KQLCFVGHRSGINPYLTLRENCLYDIHF--S----PGAVGITELCRLFSLEHLIDYPCG------LLSSGQKRQVALLRL 141 (200)
T ss_pred hheEEeccccccCcCCCHHHHHHHHHhc--C----cchHHHHHHHHHcCCchhhhCChh------hcCHHHHHHHHHHHH
Confidence 4689999999888899999999876421 1 123468899999999877766544 899999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEE
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~ 319 (723)
|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++. ....+|...
T Consensus 142 l~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 142 WMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 99999999999999999999999999999999878999999999874 335577543
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=322.97 Aligned_cols=207 Identities=23% Similarity=0.296 Sum_probs=167.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (723)
..++++|+++.|.++ .++.+|+|+|+.+++||+++|+||||||||||+++|+|+++|+. |+|.++|++...
T Consensus 10 ~~l~~~~l~~~~~~~--~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~ 84 (226)
T cd03248 10 GIVKFQNVTFAYPTR--PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG---GQVLLDGKPISQYEHK 84 (226)
T ss_pred ceEEEEEEEEEeCCC--CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---cEEEECCCchHHcCHH
Confidence 368999999999532 12469999999999999999999999999999999999998875 999999976421
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCcc-ch--HHHHHHHHHHHc--CCchHhhhhhcCCCCCCCCCHHHH
Q 004932 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF-CQ--RKNVVEDAIHAM--SLSDYANKLIGGHCYMKGLPCGER 253 (723)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~-~~--~~~~v~~~l~~l--gL~~~~~~~ig~~~~~~~LSGGer 253 (723)
..+.++|++|++.+++ .||+||+.+..... .... .+ ....+++.++.+ |+.+..++ .++.||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~------~~~~LSgG~~ 156 (226)
T cd03248 85 YLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSC-SFECVKEAAQKAHAHSFISELASGYDTEVGE------KGSQLSGGQK 156 (226)
T ss_pred HHHhhEEEEecccHHHh-hhHHHHhccccCCC-CHHHHHHHHHHcCcHHHHHhccccccchhhc------CCCcCCHHHH
Confidence 1246999999998876 69999997643211 1000 00 112246777777 67666555 3459999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|+++|++. ++. .||++++|++|++
T Consensus 157 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 157 QRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TVE-RADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HHH-hCCEEEEecCCcC
Confidence 999999999999999999999999999999999999999875 689999999985 564 5999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=313.89 Aligned_cols=198 Identities=25% Similarity=0.340 Sum_probs=160.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (723)
++++||++.+.+++...+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++| .++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~---G~i~~~g--------~i~ 69 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLS---GSVSVPG--------SIA 69 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCC---CeEEEcC--------EEE
Confidence 36899999885311001369999999999999999999999999999999999998875 9999998 599
Q ss_pred EEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHHHHHHHHHH
Q 004932 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRRVRIAR 260 (723)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerqRv~IA~ 260 (723)
|++|++.++ ..|++||+.+... . ..+...+.++.+++.+..+....+ +..+.+||||||||++|||
T Consensus 70 ~~~q~~~l~-~~t~~enl~~~~~--~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~lar 140 (204)
T cd03250 70 YVSQEPWIQ-NGTIRENILFGKP--F------DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLAR 140 (204)
T ss_pred EEecCchhc-cCcHHHHhccCCC--c------CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHH
Confidence 999999887 5699999976321 1 122345566667776554433211 2346789999999999999
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 004932 261 ELVMRPHVLFIDEPLYHLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (723)
Q Consensus 261 aL~~~P~lLlLDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (723)
+|+.+|++++|||||+|||+.++..+.+ +++++.++|.|||+++|++. .+.. +|++++|++|+
T Consensus 141 al~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 141 AVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence 9999999999999999999999999998 56777667899999999974 5666 99999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=306.25 Aligned_cols=168 Identities=28% Similarity=0.443 Sum_probs=148.8
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (723)
++++|+++.+.+ ..+.+++++|+.+++||+++|+||||||||||+++|+|+.+|+. |+|.++|++... .
T Consensus 1 i~~~~l~~~~~~---~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 74 (173)
T cd03246 1 LEVENVSFRYPG---AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTS---GRVRLDGADISQWDPNEL 74 (173)
T ss_pred CEEEEEEEEcCC---CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CeEEECCEEcccCCHHHH
Confidence 368999998842 12469999999999999999999999999999999999999875 999999987532 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHH
Q 004932 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (723)
.+.++|++|++.+++ .||+||+ ||||||||++|||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~~~l--------------------------------------------LS~G~~qrv~la~ 109 (173)
T cd03246 75 GDHVGYLPQDDELFS-GSIAENI--------------------------------------------LSGGQRQRLGLAR 109 (173)
T ss_pred HhheEEECCCCcccc-CcHHHHC--------------------------------------------cCHHHHHHHHHHH
Confidence 346899999998887 4898876 8999999999999
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004932 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 261 aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|+++|++. .+ +.||++++|++|++
T Consensus 110 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 110 ALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred HHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 999999999999999999999999999999999878999999999874 55 57999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=309.93 Aligned_cols=177 Identities=27% Similarity=0.380 Sum_probs=149.1
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------CCceEEEEcCCCc-c
Q 004932 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-------PYGSYGFVERETT-L 193 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~~yv~Q~~~-l 193 (723)
++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++ |+|.++|++... ..+.++|++|++. .
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQS---GAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 3569999999999999999999999999999999999998875 999999987531 1246899999973 2
Q ss_pred CCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 004932 194 IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDE 273 (723)
Q Consensus 194 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDE 273 (723)
+...||+||+.+..... .....+..++++++++.+||.+..++.+ ..||||||||++|||||+.+|++|||||
T Consensus 81 ~~~~tv~~nl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 81 LFAADVDQDVAFGPLNL-GLSEAEVERRVREALTAVGASGLRERPT------HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCchhhhhCCh------hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 33579999998864322 1111123456889999999988777754 4999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 004932 274 PLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (723)
Q Consensus 274 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (723)
||+|||+.++..+.+.|++++++|+|||+++|++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999888999999999873
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=326.20 Aligned_cols=229 Identities=23% Similarity=0.282 Sum_probs=197.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCC---
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSE--- 178 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~--~~~~G~I~i~G~~~~--- 178 (723)
..+.++|+++.+.... +...++++|||.+++||.+||+|+||||||-..+.+.|+++.. ...+|+|.++|++.-
T Consensus 5 ~lL~v~nLsV~f~~~~-~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 5 PLLSIRNLSVAFHQEG-GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred cceeeeccEEEEecCC-cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 4689999999996432 4668999999999999999999999999999999999999753 345799999998731
Q ss_pred ------CCCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCH
Q 004932 179 ------MPYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (723)
Q Consensus 179 ------~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSG 250 (723)
..-..|++++|++ .|.|-.|+.+.+....++.......+.++++.++|+.+|+.+-..++ +.||++|||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl---~~yPHeLSG 160 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRL---DAYPHELSG 160 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhh---hhCCcccCc
Confidence 1123699999997 68898999999887776654433334677899999999998777665 569999999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 004932 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (723)
Q Consensus 251 GerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (723)
||||||.||.||+.+|++||.||||++||...+.+|+++|++|.+ .|..+++++|+. ..+.+++|||+||.+|++|+.
T Consensus 161 GqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL-~iVr~~ADrV~VM~~G~ivE~ 239 (534)
T COG4172 161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL-GIVRKFADRVYVMQHGEIVET 239 (534)
T ss_pred chhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH-HHHHHhhhhEEEEeccEEeec
Confidence 999999999999999999999999999999999999999999984 699999987776 588999999999999999999
Q ss_pred eChhHHHH
Q 004932 330 GETLACLQ 337 (723)
Q Consensus 330 G~~~~~~~ 337 (723)
|.+++++.
T Consensus 240 ~~t~~lF~ 247 (534)
T COG4172 240 GTTETLFA 247 (534)
T ss_pred CcHHHHhh
Confidence 99988863
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=307.73 Aligned_cols=174 Identities=23% Similarity=0.392 Sum_probs=151.8
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (723)
++++|+++.+.++ .+.+++|+|+++++||+++|+||||||||||+++|+|+.+|.. |+|.++|++... .+
T Consensus 1 i~~~~~~~~~~~~---~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 74 (178)
T cd03247 1 LSINNVSFSYPEQ---EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQ---GEITLDGVPVSDLEKALS 74 (178)
T ss_pred CEEEEEEEEeCCC---CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---CEEEECCEEHHHHHHHHH
Confidence 3689999988531 1369999999999999999999999999999999999998874 999999986421 12
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.++|++|++.+++ .|++||+ + ..||||||||++||||
T Consensus 75 ~~i~~~~q~~~~~~-~tv~~~i-----------------------------------~------~~LS~G~~qrv~lara 112 (178)
T cd03247 75 SLISVLNQRPYLFD-TTLRNNL-----------------------------------G------RRFSGGERQRLALARI 112 (178)
T ss_pred hhEEEEccCCeeec-ccHHHhh-----------------------------------c------ccCCHHHHHHHHHHHH
Confidence 46899999988875 6998876 2 3899999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
|+.+|++|+|||||+|||+.++..+++.|+++. ++.|+|+++|++. ++ ..||++++|++|++++.|
T Consensus 113 l~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 113 LLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999996 5899999999885 55 469999999999998764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=312.41 Aligned_cols=197 Identities=22% Similarity=0.296 Sum_probs=163.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++|+++.++. ..+.+|+|+|+.+++||+++|+|+||||||||+++|+|+.+|+. |+|.++|++...
T Consensus 6 ~l~~~~l~~~~~~---~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~ 79 (207)
T cd03369 6 EIEVENLSVRYAP---DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE---GKIEIDGIDISTIPLED 79 (207)
T ss_pred eEEEEEEEEEeCC---CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CeEEECCEEhHHCCHHH
Confidence 5899999999852 12469999999999999999999999999999999999998874 999999987421
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (723)
.++.++|++|++.+++ .||+||+.+.. . . ..+.+.+.++ .+ ..+..||||||||++||
T Consensus 80 ~~~~i~~v~q~~~~~~-~tv~~~l~~~~-----~-~--~~~~~~~~l~-------~~------~~~~~LS~G~~qrv~la 137 (207)
T cd03369 80 LRSSLTIIPQDPTLFS-GTIRSNLDPFD-----E-Y--SDEEIYGALR-------VS------EGGLNLSQGQRQLLCLA 137 (207)
T ss_pred HHhhEEEEecCCcccC-ccHHHHhcccC-----C-C--CHHHHHHHhh-------cc------CCCCcCCHHHHHHHHHH
Confidence 1346999999998886 59999995421 1 1 1222333333 12 24569999999999999
Q ss_pred HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004932 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 260 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
|+|+.+|++|||||||+|||+.++..+.+.|+++. +|+|+|+++|++. ++.. ||++++|++|+++..|++
T Consensus 138 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 138 RALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHhh-CCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999999999985 4899999999875 5555 999999999999988763
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=366.73 Aligned_cols=217 Identities=27% Similarity=0.382 Sum_probs=183.5
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (723)
..++++||++.|++ ..+.+|+|+|+.+++||.+||+|+||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 454 ~~i~~~~vsf~y~~---~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~---G~I~idg~~i~~~~~~ 527 (694)
T TIGR01846 454 GAITFENIRFRYAP---DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH---GQVLVDGVDLAIADPA 527 (694)
T ss_pred CeEEEEEEEEEcCC---CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEehhhCCHH
Confidence 36899999999953 23469999999999999999999999999999999999999875 999999997542
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHH
Q 004932 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (723)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGer 253 (723)
.++.++||+|++.+++ .|++||+.++ .+. ..++.+.++++..++.+..++.+.|.+ ...+||||||
T Consensus 528 ~~r~~i~~v~q~~~lf~-~ti~eNi~~~----~~~---~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~ 599 (694)
T TIGR01846 528 WLRRQMGVVLQENVLFS-RSIRDNIALC----NPG---APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQR 599 (694)
T ss_pred HHHHhCeEEccCCeehh-hhHHHHHhcC----CCC---CCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHH
Confidence 1356999999999886 5999999652 111 235667888999998877655543222 3467999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||++|||||+++|++||||||||+||+.++..+.+.|+++. .++|+|+++|++. .+ +.||+|++|++|++++.|+.+
T Consensus 600 qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~~-~~~d~ii~l~~G~i~~~g~~~ 676 (694)
T TIGR01846 600 QRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS-TV-RACDRIIVLEKGQIAESGRHE 676 (694)
T ss_pred HHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH-HH-HhCCEEEEEeCCEEEEeCCHH
Confidence 99999999999999999999999999999999999999985 5789999999984 44 569999999999999999988
Q ss_pred HHHH
Q 004932 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++.+
T Consensus 677 ~l~~ 680 (694)
T TIGR01846 677 ELLA 680 (694)
T ss_pred HHHH
Confidence 8754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=355.61 Aligned_cols=218 Identities=21% Similarity=0.268 Sum_probs=180.5
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-CCCceeEEEECCEeCCCC--
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH-SARMYGEVFVNGAKSEMP-- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~-~~~~~G~I~i~G~~~~~~-- 180 (723)
..++++|+++.+.+. .++.+|+|+|+.+++||+++|+||||||||||||+|+|+++| . +|+|.++|++....
T Consensus 256 ~~l~~~~l~~~~~~~--~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---~G~i~~~g~~~~~~~~ 330 (500)
T TIGR02633 256 VILEARNLTCWDVIN--PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF---EGNVFINGKPVDIRNP 330 (500)
T ss_pred ceEEEeCCccccccc--ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---CeEEEECCEECCCCCH
Confidence 358999999876311 124699999999999999999999999999999999999985 4 49999999875321
Q ss_pred ----CceEEEEcCCC---ccCCCCCHHHHHHHHHHhcCC---C-ccchHHHHHHHHHHHcCCch-HhhhhhcCCCCCCCC
Q 004932 181 ----YGSYGFVERET---TLIGSLTVREYLYYSALLQLP---G-FFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGL 248 (723)
Q Consensus 181 ----~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~---~-~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~L 248 (723)
++.++|++|+. .+++.+||+||+.++..-... . .....+++++++++.+++.+ ..++.+ ..|
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~L 404 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI------GRL 404 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc------ccC
Confidence 24689999995 588999999999875321110 0 11123456889999999964 566644 499
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 004932 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (723)
Q Consensus 249 SGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (723)
||||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|.|||+++|++ .++.++||++++|++|+++.
T Consensus 405 SgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~v~~l~~G~i~~ 483 (500)
T TIGR02633 405 SGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL-AEVLGLSDRVLVIGEGKLKG 483 (500)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999998899999988887 57889999999999999998
Q ss_pred EeChh
Q 004932 329 FGETL 333 (723)
Q Consensus 329 ~G~~~ 333 (723)
.++.+
T Consensus 484 ~~~~~ 488 (500)
T TIGR02633 484 DFVNH 488 (500)
T ss_pred EEccc
Confidence 77653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=354.37 Aligned_cols=211 Identities=21% Similarity=0.311 Sum_probs=178.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++|+++ .+|+|+|+.+++||+++|+||||||||||+|+|+|+.+|++ |+|.++|++....
T Consensus 257 ~l~~~~l~~----------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~---G~I~~~g~~i~~~~~~~ 323 (501)
T PRK10762 257 RLKVDNLSG----------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTS---GYVTLDGHEVVTRSPQD 323 (501)
T ss_pred EEEEeCccc----------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHHH
Confidence 577888763 37999999999999999999999999999999999998875 9999999875321
Q ss_pred --CceEEEEcCCC---ccCCCCCHHHHHHHHHHhcC----C-CccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCC
Q 004932 181 --YGSYGFVERET---TLIGSLTVREYLYYSALLQL----P-GFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLP 249 (723)
Q Consensus 181 --~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~----~-~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LS 249 (723)
++.++|++|++ .+++.+||.||+.+...... . ....+.+++++++++.++|. +..++.+ ..||
T Consensus 324 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LS 397 (501)
T PRK10762 324 GLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI------GLLS 397 (501)
T ss_pred HHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch------hhCC
Confidence 23599999995 57889999999987532110 0 01112345688999999995 5666655 4999
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 004932 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (723)
Q Consensus 250 GGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (723)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|+++..
T Consensus 398 gGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~ 476 (501)
T PRK10762 398 GGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEM-PEVLGMSDRILVMHEGRISGE 476 (501)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999988899999988887 588899999999999999999
Q ss_pred eChhHH
Q 004932 330 GETLAC 335 (723)
Q Consensus 330 G~~~~~ 335 (723)
|+++++
T Consensus 477 ~~~~~~ 482 (501)
T PRK10762 477 FTREQA 482 (501)
T ss_pred eccccC
Confidence 987654
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=357.75 Aligned_cols=216 Identities=22% Similarity=0.264 Sum_probs=181.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++|+++.|+. .++.+|+|+|+++++||.++|+||||||||||+++|+|+++|++ |+|.+||++...
T Consensus 313 ~I~~~~v~~~y~~---~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~---G~i~~~g~~~~~~~~~~ 386 (569)
T PRK10789 313 ELDVNIRQFTYPQ---TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSE---GDIRFHDIPLTKLQLDS 386 (569)
T ss_pred cEEEEEEEEECCC---CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CEEEECCEEHhhCCHHH
Confidence 5899999999853 23469999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCC-----CCCCCCCHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERR 254 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerq 254 (723)
.++.++|++|++.+++. |++||+.++. +. ..++.++++++..++.+...+.+.|. +....|||||||
T Consensus 387 ~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~~---~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~q 458 (569)
T PRK10789 387 WRSRLAVVSQTPFLFSD-TVANNIALGR----PD---ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQ 458 (569)
T ss_pred HHhheEEEccCCeeccc-cHHHHHhcCC----CC---CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 13569999999999864 9999996531 11 23456778888888876654443222 234679999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|++|||||+++|++|||||||++||+.++..+.+.|+++. +|+|+|+++|++. ..+.||+|++|++|++++.|+.++
T Consensus 459 Ri~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~ 535 (569)
T PRK10789 459 RISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQ 535 (569)
T ss_pred HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999999999999985 5899999999984 346799999999999999999887
Q ss_pred HHH
Q 004932 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
+.+
T Consensus 536 l~~ 538 (569)
T PRK10789 536 LAQ 538 (569)
T ss_pred HHH
Confidence 754
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=358.04 Aligned_cols=217 Identities=22% Similarity=0.343 Sum_probs=183.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++||++.|+.. .++.+|+|+|++++|||.++|+|+||||||||+|+|+|+++|.. |+|.+||.+....
T Consensus 337 ~i~~~~v~f~y~~~--~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~---G~I~i~g~~i~~~~~~~ 411 (576)
T TIGR02204 337 EIEFEQVNFAYPAR--PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQS---GRILLDGVDLRQLDPAE 411 (576)
T ss_pred eEEEEEEEEECCCC--CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CEEEECCEEHHhcCHHH
Confidence 58999999999531 12579999999999999999999999999999999999999875 9999999875321
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHHH
Q 004932 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (723)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (723)
++.++|++|++.+++ .|++||+.++ .+. ..++++.++++.+++.+..++...|.+ ....|||||||
T Consensus 412 ~~~~i~~~~Q~~~lf~-~Ti~~Ni~~~----~~~---~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Q 483 (576)
T TIGR02204 412 LRARMALVPQDPVLFA-ASVMENIRYG----RPD---ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ 483 (576)
T ss_pred HHHhceEEccCCcccc-ccHHHHHhcC----CCC---CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHH
Confidence 246999999999885 5999999653 111 235678889999999877766543322 34569999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|++||||++.+|++|+||||||+||+.++..+++.|+++. +++|+|+++|++. ....+|+|++|++|++++.|+.++
T Consensus 484 rl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~~ 560 (576)
T TIGR02204 484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHAE 560 (576)
T ss_pred HHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHHH
Confidence 9999999999999999999999999999999999999985 4799999999973 457799999999999999999887
Q ss_pred HHH
Q 004932 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
..+
T Consensus 561 l~~ 563 (576)
T TIGR02204 561 LIA 563 (576)
T ss_pred HHH
Confidence 643
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=307.51 Aligned_cols=174 Identities=30% Similarity=0.484 Sum_probs=148.5
Q ss_pred EEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC-----
Q 004932 107 VWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY----- 181 (723)
Q Consensus 107 ~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~----- 181 (723)
+++|+++.|. .+.+|+|+|+.+++||+++|+||||||||||+++|+|+.+|+. |+|.++|++.....
T Consensus 1 ~~~~l~~~~~-----~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~---G~v~~~g~~~~~~~~~~~~ 72 (180)
T cd03214 1 EVENLSVGYG-----GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSS---GEILLDGKDLASLSPKELA 72 (180)
T ss_pred CeeEEEEEEC-----CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCcCCHHHHH
Confidence 3688999884 2469999999999999999999999999999999999998875 99999998653110
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.++|++| +++.+||.+..++. ++.||||||||++|||+
T Consensus 73 ~~i~~~~q-----------------------------------~l~~~gl~~~~~~~------~~~LS~G~~qrl~lara 111 (180)
T cd03214 73 RKIAYVPQ-----------------------------------ALELLGLAHLADRP------FNELSGGERQRVLLARA 111 (180)
T ss_pred HHHhHHHH-----------------------------------HHHHcCCHhHhcCC------cccCCHHHHHHHHHHHH
Confidence 11233332 77888888776654 45999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
|+.+|+++||||||+|||+.++..+.+.|++++++ |.|+|+++|++. ++.++||++++|++|++++.|
T Consensus 112 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 112 LAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999876 899999998874 778999999999999998654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=355.52 Aligned_cols=212 Identities=19% Similarity=0.266 Sum_probs=178.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++|++. +.+++|+|+.+++||+++|+||||||||||+|+|+|+.+|++ |+|.++|++....
T Consensus 257 ~l~~~~~~~---------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~---G~i~~~g~~~~~~~~~~ 324 (501)
T PRK11288 257 RLRLDGLKG---------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTA---GQVYLDGKPIDIRSPRD 324 (501)
T ss_pred EEEEecccc---------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCC---ceEEECCEECCCCCHHH
Confidence 577888863 148999999999999999999999999999999999998874 9999999875321
Q ss_pred --CceEEEEcCCC---ccCCCCCHHHHHHHHHHhcC-C-C---ccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCC
Q 004932 181 --YGSYGFVERET---TLIGSLTVREYLYYSALLQL-P-G---FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLP 249 (723)
Q Consensus 181 --~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~-~-~---~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LS 249 (723)
++.++|++|++ .+++.+|+.||+.+...... + . .....++.++++++.+++. +..++.+ ..||
T Consensus 325 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LS 398 (501)
T PRK11288 325 AIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI------MNLS 398 (501)
T ss_pred HHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc------ccCC
Confidence 24689999985 48889999999976432110 0 0 1112335688999999994 5677655 4999
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 004932 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (723)
Q Consensus 250 GGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (723)
|||||||+|||+|+.+|+||||||||+|||+.++..++++|++++++|.|||+++|+. .++.++||++++|++|++++.
T Consensus 399 gGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~i~~l~~g~i~~~ 477 (501)
T PRK11288 399 GGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL-PEVLGVADRIVVMREGRIAGE 477 (501)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999998899999988887 578899999999999999999
Q ss_pred eChhHH
Q 004932 330 GETLAC 335 (723)
Q Consensus 330 G~~~~~ 335 (723)
|+++++
T Consensus 478 ~~~~~~ 483 (501)
T PRK11288 478 LAREQA 483 (501)
T ss_pred EccccC
Confidence 987653
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=314.77 Aligned_cols=190 Identities=26% Similarity=0.332 Sum_probs=166.0
Q ss_pred eEEEEeEEEEEeccc--cc--ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC
Q 004932 105 SVVWKDLTVTIKGKR--RY--SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~--~~--~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~ 180 (723)
.++++||++.|..+. .. ...+++||||.+++||+++|+|+||||||||-|+|.|+++|++ |+|.++|+++...
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~---G~i~f~g~~i~~~ 80 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTS---GEILFEGKDITKL 80 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCC---ceEEEcCcchhhc
Confidence 589999999996432 11 2479999999999999999999999999999999999999985 9999999864211
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HhhhhhcCCCCCCCCCHHHHHHHHHH
Q 004932 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~IA 259 (723)
. ..+..+++.++|+.+||.. .+++ +|++||||||||++||
T Consensus 81 ~---------------------------------~~~~~~~v~elL~~Vgl~~~~~~r------yPhelSGGQrQRi~IA 121 (268)
T COG4608 81 S---------------------------------KEERRERVLELLEKVGLPEEFLYR------YPHELSGGQRQRIGIA 121 (268)
T ss_pred c---------------------------------hhHHHHHHHHHHHHhCCCHHHhhc------CCcccCchhhhhHHHH
Confidence 1 1135577999999999864 5555 7789999999999999
Q ss_pred HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 260 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|||+.+|+++++|||||+||...+.+++++|+++++ .|.|.++++|+. ..+..++|||.+|..|++|+.|+.++++.
T Consensus 122 RALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL-~vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 122 RALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDL-SVVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred HHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEH-HhhhhhcccEEEEecCceeEecCHHHHhh
Confidence 999999999999999999999999999999999985 599999988886 58899999999999999999999998864
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=352.05 Aligned_cols=218 Identities=23% Similarity=0.256 Sum_probs=186.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++|+++.|+..+ ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+. |+|.++|+++...
T Consensus 4 ~l~~~nl~~~y~~~~-~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 4 LLELKDIRRSYPSGE-EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTS---GTYRVAGQDVATLDADA 79 (648)
T ss_pred EEEEeeEEEEeCCCC-CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEcCcCCHHH
Confidence 589999999995321 23569999999999999999999999999999999999999875 9999999875321
Q ss_pred -----CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004932 181 -----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
++.++|++|+..+++.+|+.||+.+...... ....+.++++.++++.+||.+..++.+ ..||||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~lgl~~~~~~~~------~~LS~Gq~qr 152 (648)
T PRK10535 80 LAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAG-LERKQRLLRAQELLQRLGLEDRVEYQP------SQLSGGQQQR 152 (648)
T ss_pred HHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCChhhhcCCc------ccCCHHHHHH
Confidence 2468999999999999999999987643221 111234567889999999998877754 4999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|++. .+ +.||++++|++|++++.|++++.
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~ 230 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ-VA-AQAERVIEIRDGEIVRNPPAQEK 230 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HH-HhCCEEEEEECCEEEeecCcccc
Confidence 99999999999999999999999999999999999999878999999999974 44 57999999999999999987653
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=332.07 Aligned_cols=186 Identities=27% Similarity=0.447 Sum_probs=161.7
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccch
Q 004932 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ 217 (723)
Q Consensus 141 IlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~ 217 (723)
|+||||||||||||+|+|+++|++ |+|.++|++... ..+.++|++|+..+++.+||+||+.|....+. ....+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~---G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~-~~~~~ 76 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDS---GSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRK-VPRAE 76 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcC-CCHHH
Confidence 689999999999999999999875 999999987532 13569999999999999999999998754321 11112
Q ss_pred HHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 004932 218 RKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST- 296 (723)
Q Consensus 218 ~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~- 296 (723)
.+++++++++.++|.+..++.+ ++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++
T Consensus 77 ~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 77 IKPRVLEALRLVQLEEFADRKP------HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHcCCcchhcCCh------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 3467899999999998887754 599999999999999999999999999999999999999999999999864
Q ss_pred CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 297 GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 297 g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|+|+|+++|++ .++.++||++++|++|+++..|+++++.+
T Consensus 151 g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 151 GITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 89999998887 57889999999999999999999988754
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=355.01 Aligned_cols=215 Identities=23% Similarity=0.293 Sum_probs=179.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++|+++.|++ .+++|+|+|+++++||.+||+||||||||||+++|+|+.+|++ |+|.++|.+...
T Consensus 334 ~i~~~~v~~~y~~----~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g~~~~~~~~~~ 406 (585)
T TIGR01192 334 AVEFRHITFEFAN----SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTV---GQILIDGIDINTVTRES 406 (585)
T ss_pred eEEEEEEEEECCC----CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCC---CEEEECCEEhhhCCHHH
Confidence 5899999999852 2468999999999999999999999999999999999999875 999999987532
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCC-----CCCCCCCHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERR 254 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerq 254 (723)
.++.++||+|++.+++ .|++||+.++. +. ..++.+.++++..++.+...+.++|. +....|||||||
T Consensus 407 ~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~~---~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~q 478 (585)
T TIGR01192 407 LRKSIATVFQDAGLFN-RSIRENIRLGR----EG---ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQ 478 (585)
T ss_pred HHhheEEEccCCccCc-ccHHHHHhcCC----CC---CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHH
Confidence 1357999999998886 69999997631 11 12445667777777766554433221 245679999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|++|||||+.+|++|+|||||+|||+.++..+.+.|+++. +++|+|+++|++. .+ +.||+|++|++|++++.|+.++
T Consensus 479 rl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~ 555 (585)
T TIGR01192 479 RLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS-TV-RNADLVLFLDQGRLIEKGSFQE 555 (585)
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH-HH-HcCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999885 4899999999984 44 6699999999999999999887
Q ss_pred HHH
Q 004932 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
+.+
T Consensus 556 l~~ 558 (585)
T TIGR01192 556 LIQ 558 (585)
T ss_pred HHH
Confidence 654
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=300.78 Aligned_cols=229 Identities=21% Similarity=0.327 Sum_probs=196.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.|+++||++++.+ ++.||++||++|++||+.+||||||||||||.++|+|.-.. ..++|+|.++|+++..
T Consensus 3 ~L~I~dLhv~v~~----~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y-~Vt~G~I~~~GedI~~l~~~E 77 (251)
T COG0396 3 MLEIKDLHVEVEG----KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY-EVTEGEILFDGEDILELSPDE 77 (251)
T ss_pred eeEEeeeEEEecC----chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc-eEecceEEECCcccccCCHhH
Confidence 5899999999953 25899999999999999999999999999999999998533 2457999999998532
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCc--cchHHHHHHHHHHHcCCch-HhhhhhcCCCCCCCCCHHHHHH
Q 004932 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF--FCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~--~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqR 255 (723)
.+..+..-+|.|.=+|..|+.+.|..+.+.+.... ..+-.+.+++.++.+++.+ ++++.+. .++|||||||
T Consensus 78 RAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN-----~GFSGGEkKR 152 (251)
T COG0396 78 RARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN-----EGFSGGEKKR 152 (251)
T ss_pred HHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC-----CCcCcchHHH
Confidence 23457788999999999999999987766543221 1234567889999999976 7888775 4899999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcC--CEEEEEeCCeEEEEeChh
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF--DRICLLSNGNTLFFGETL 333 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~--D~v~vL~~G~iv~~G~~~ 333 (723)
..|+..++.+|++.|||||-||||..+-+.|.+.++.+++.|.+++++||.. .+.++. |+|.||.+|+||..|.+
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~- 229 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP- 229 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH-
Confidence 9999999999999999999999999999999999999999999999989985 566665 99999999999999999
Q ss_pred HHHHHhhhcCCCC
Q 004932 334 ACLQHFSNAGFPC 346 (723)
Q Consensus 334 ~~~~~f~~~g~~~ 346 (723)
++.+.+++.||.|
T Consensus 230 el~~~le~~gy~~ 242 (251)
T COG0396 230 ELAEELEEKGYDW 242 (251)
T ss_pred HHHHHHHHhchHH
Confidence 8889999888865
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=318.22 Aligned_cols=205 Identities=21% Similarity=0.312 Sum_probs=167.1
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 004932 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (723)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (723)
...++++|+++. .+.+|+|+|+.+++||+++|+|+||||||||+++|+|+++|.. |+|.++|
T Consensus 37 ~~~l~i~nls~~-------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~---G~I~i~g-------- 98 (282)
T cd03291 37 DNNLFFSNLCLV-------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSE---GKIKHSG-------- 98 (282)
T ss_pred CCeEEEEEEEEe-------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC--------
Confidence 346899999884 2469999999999999999999999999999999999999875 9999988
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHHHHHHH
Q 004932 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRRVR 257 (723)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerqRv~ 257 (723)
.++|++|++.+++. ||+||+.+... . ...++.+.++.+++.+..+....+ ...+..||||||||++
T Consensus 99 ~i~yv~q~~~l~~~-tv~enl~~~~~--~------~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~ 169 (282)
T cd03291 99 RISFSSQFSWIMPG-TIKENIIFGVS--Y------DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARIS 169 (282)
T ss_pred EEEEEeCccccccc-CHHHHhhcccc--c------CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHH
Confidence 38999999988875 99999976321 0 112344556667776555443211 1234689999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTL-KKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L-~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
|||+|+.+|++|||||||+|||+.++..+.+.+ ++++ ++.|||+++|++. .+ ..||++++|++|++++.|+++++.
T Consensus 170 lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 170 LARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999865 5554 4789999999875 44 579999999999999999988764
Q ss_pred H
Q 004932 337 Q 337 (723)
Q Consensus 337 ~ 337 (723)
.
T Consensus 247 ~ 247 (282)
T cd03291 247 S 247 (282)
T ss_pred h
Confidence 3
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-37 Score=382.94 Aligned_cols=221 Identities=20% Similarity=0.292 Sum_probs=185.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC--------------------
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-------------------- 164 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~-------------------- 164 (723)
.++++||++.|+++ .++++|+|+|+++++|+.+||+||||||||||+++|.|+++|..
T Consensus 1165 ~I~f~nVsF~Y~~~--~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR--PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred eEEEEEEEEECCCC--CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccc
Confidence 59999999999642 23579999999999999999999999999999999999998720
Q ss_pred -------------------------------CceeEEEECCEeCCC-----CCceEEEEcCCCccCCCCCHHHHHHHHHH
Q 004932 165 -------------------------------RMYGEVFVNGAKSEM-----PYGSYGFVERETTLIGSLTVREYLYYSAL 208 (723)
Q Consensus 165 -------------------------------~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~ 208 (723)
..+|+|++||.++.. .++.++||+|++.+|+ .|++|||.++.
T Consensus 1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~- 1320 (1466)
T PTZ00265 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGK- 1320 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCC-
Confidence 036999999998632 2457999999999985 69999998741
Q ss_pred hcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 004932 209 LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (723)
Q Consensus 209 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~ 283 (723)
+. ..++.++++++..++.+....++.|.+ ....||||||||++|||||+++|+|||||||||+||+.++
T Consensus 1321 ---~~---at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE 1394 (1466)
T PTZ00265 1321 ---ED---ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSE 1394 (1466)
T ss_pred ---CC---CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 21 245668899999998877655544332 3457999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeC----CeEE-EEeChhHHHH
Q 004932 284 LLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSN----GNTL-FFGETLACLQ 337 (723)
Q Consensus 284 ~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~----G~iv-~~G~~~~~~~ 337 (723)
+.|.+.|+++. .+++|+|+++|+++ ..+.||+|++|++ |+++ +.|+.++++.
T Consensus 1395 ~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1395 KLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 99999999987 46899999999974 3567999999999 9955 8999888753
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=308.51 Aligned_cols=201 Identities=23% Similarity=0.256 Sum_probs=162.1
Q ss_pred EEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------
Q 004932 107 VWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------- 179 (723)
Q Consensus 107 ~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------- 179 (723)
.+.|+++.+.. .+.+++|+|+++++||+++|+|||||||||||++|+|+.+|+. |+|.++|++...
T Consensus 2 ~~~~~~~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~~ 74 (218)
T cd03290 2 QVTNGYFSWGS----GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLE---GKVHWSNKNESEPSFEATR 74 (218)
T ss_pred eeeeeEEecCC----CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---CeEEECCcccccccccccc
Confidence 46788888742 3569999999999999999999999999999999999998874 999999976421
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHH
Q 004932 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGE 252 (723)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGe 252 (723)
.++.++|++|++.++ ..|++||+.+... . ..+...++++.++|.+..+....+ +..+..|||||
T Consensus 75 ~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~----~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~ 145 (218)
T cd03290 75 SRNRYSVAYAAQKPWLL-NATVEENITFGSP----F----NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQ 145 (218)
T ss_pred hhhcceEEEEcCCCccc-cccHHHHHhhcCc----C----CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHH
Confidence 124689999999887 5799999976421 1 122345677777876654432110 23567999999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH--HHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 004932 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV--TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~--~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (723)
||||+|||+|+.+|++|||||||+|||+.++..+++ +++.+++.|.|+|+++|++. .+ ..||++++|++|.
T Consensus 146 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 146 RQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEecCCC
Confidence 999999999999999999999999999999999998 67777777899999999985 45 4699999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=349.17 Aligned_cols=211 Identities=18% Similarity=0.215 Sum_probs=176.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++|++. .+|+|||+.+++||++||+||||||||||+|+|+|+.+|++ |+|.++|+++...
T Consensus 268 ~l~~~~l~~----------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~i~~~~~~~ 334 (510)
T PRK15439 268 VLTVEDLTG----------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARG---GRIMLNGKEINALSTAQ 334 (510)
T ss_pred eEEEeCCCC----------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---cEEEECCEECCCCCHHH
Confidence 578888872 26999999999999999999999999999999999998875 9999999875321
Q ss_pred --CceEEEEcCCC---ccCCCCCHHHHHHHHHH--hcCCCccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCCHHH
Q 004932 181 --YGSYGFVERET---TLIGSLTVREYLYYSAL--LQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (723)
Q Consensus 181 --~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGe 252 (723)
++.++|++|+. .+++.+|+.|++..... ..........++.++++++.+||. +..++.+ ..|||||
T Consensus 335 ~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgG~ 408 (510)
T PRK15439 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA------RTLSGGN 408 (510)
T ss_pred HHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc------ccCCcHH
Confidence 23589999984 48888999999854211 111111112345688999999997 6676654 4999999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004932 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++|.|||+++|++ .++.++||++++|++|++++.|++
T Consensus 409 kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~-~~i~~~~d~i~~l~~G~i~~~~~~ 487 (510)
T PRK15439 409 QQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDL-EEIEQMADRVLVMHQGEISGALTG 487 (510)
T ss_pred HHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEcc
Confidence 9999999999999999999999999999999999999999998899999988887 588899999999999999999877
Q ss_pred hHH
Q 004932 333 LAC 335 (723)
Q Consensus 333 ~~~ 335 (723)
+++
T Consensus 488 ~~~ 490 (510)
T PRK15439 488 AAI 490 (510)
T ss_pred ccC
Confidence 643
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=349.60 Aligned_cols=210 Identities=18% Similarity=0.225 Sum_probs=178.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++||++.|++++...+.+|+|+|+++++||++||+||||||||||+++|+|+++|++ |+|.++|.++...
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~---G~i~~~g~~i~~~~~~ 412 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE---GEILLDGAAVSADSRD 412 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHH
Confidence 3689999999996421112469999999999999999999999999999999999999975 9999999886431
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
++.++||+|++.+|.. |++||+. + ...+++++++++.+++.+..+..++|.+....||||||||++|
T Consensus 413 ~~~~~i~~v~q~~~lf~~-ti~~n~~-------~---~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlal 481 (555)
T TIGR01194 413 DYRDLFSAIFADFHLFDD-LIGPDEG-------E---HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLAL 481 (555)
T ss_pred HHHhhCcEEccChhhhhh-hhhcccc-------c---chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHH
Confidence 2468999999988864 7888741 1 1245668899999999998888777777778999999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH-HHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK-KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~-~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (723)
||||+.+|++|||||||++||+.++..+.+.+. .+...|+|+|+++|++. ..+.||+|++|++|++++.
T Consensus 482 aRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 482 ICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999998664 56667899999999874 4578999999999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=293.89 Aligned_cols=156 Identities=25% Similarity=0.450 Sum_probs=136.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (723)
++++|+++.|+ ++++++++|+++++||+++|+||||||||||+++|+|+.+|+. |+|.++|++....
T Consensus 1 l~~~~l~~~~~-----~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~v~~~g~~~~~~~~~~~ 72 (163)
T cd03216 1 LELRGITKRFG-----GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS---GEILVDGKEVSFASPRDA 72 (163)
T ss_pred CEEEEEEEEEC-----CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEECCcCCHHHH
Confidence 36899999984 3469999999999999999999999999999999999999875 9999999764310
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHH
Q 004932 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (723)
.+.++|++| ||||||||++||
T Consensus 73 ~~~~i~~~~q----------------------------------------------------------LS~G~~qrl~la 94 (163)
T cd03216 73 RRAGIAMVYQ----------------------------------------------------------LSVGERQMVEIA 94 (163)
T ss_pred HhcCeEEEEe----------------------------------------------------------cCHHHHHHHHHH
Confidence 112333333 999999999999
Q ss_pred HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 004932 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (723)
Q Consensus 260 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (723)
|||+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++ .++.++||++++|++|++++
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL-DEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999987799999988886 46888999999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=328.44 Aligned_cols=212 Identities=22% Similarity=0.305 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++++++.|+ ...+++|||+.+++||+.||+|+||||||||+++|.|.++|++ |+|.++|++....
T Consensus 4 ~l~~~~itK~f~-----~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~---GeI~v~G~~v~~~sP~d 75 (501)
T COG3845 4 ALEMRGITKRFP-----GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDS---GEIRVDGKEVRIKSPRD 75 (501)
T ss_pred eEEEeccEEEcC-----CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCc---ceEEECCEEeccCCHHH
Confidence 589999999994 5679999999999999999999999999999999999999986 9999999975432
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcC-C-CccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH
Q 004932 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQL-P-GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-~-~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (723)
+..||+|.|+..|++++||.||+..+..-.. + ....+.+++++++.+..||.-..+..++ +||-||||||
T Consensus 76 A~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~------dLsVG~qQRV 149 (501)
T COG3845 76 AIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA------DLSVGEQQRV 149 (501)
T ss_pred HHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee------cCCcchhHHH
Confidence 2469999999999999999999977643211 0 1122356789999999999876766665 9999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004932 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 257 ~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
.|-++|.++|++|||||||+-|-|....++++.|++|+++|+|||+++|.. .|+.++|||+.||.+||++..-+
T Consensus 150 EIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL-~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 150 EILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKL-KEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhhCeeEEEeCCeEEeeec
Confidence 999999999999999999999999999999999999999999999988886 68999999999999999987665
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=305.68 Aligned_cols=195 Identities=15% Similarity=0.127 Sum_probs=158.9
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-ECCEeCCCCCceEEEEcCCCccCCCCCHHHH
Q 004932 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-VNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~-i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (723)
.+|+|||+.+++||+++|+||||||||||+|+|+|+.+|++ |+|. ++|... .+.++..+++.+|++||
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~s---G~i~~~~~~~~--------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDE---GDFIGLRGDAL--------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCC---CCEEEecCcee--------ccccccccCCcCcHHHH
Confidence 37899999999999999999999999999999999998875 9997 777532 12345678899999999
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 004932 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282 (723)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~ 282 (723)
+.+.+.... . ..++..+.+.+.++|.+..++.++ +||||||||++|||||+.+|+++||||||++||+.+
T Consensus 70 l~~~~~~~~-~---~~~~~~~~~~~~~~l~~~~~~~~~------~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~ 139 (213)
T PRK15177 70 ARMMASLYG-L---DGDEFSHFCYQLTQLEQCYTDRVS------EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNAT 139 (213)
T ss_pred HHHHHHHcC-C---CHHHHHHHHHHHhChhHHhhchHh------hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHH
Confidence 988654321 1 112222344566788777777554 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHhhh
Q 004932 283 ALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 341 (723)
Q Consensus 283 ~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~ 341 (723)
+..+.+.|.+..+ ++++|+++|++ ..+..+||++++|++|++++.|+.+++.++++.
T Consensus 140 ~~~~~~~l~~~~~-~~~ii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 140 QLRMQAALACQLQ-QKGLIVLTHNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHhh-CCcEEEEECCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 9999998865443 35788888877 478889999999999999999999988766543
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=345.00 Aligned_cols=208 Identities=18% Similarity=0.260 Sum_probs=174.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (723)
++++|++++|. ++++|+|+|+.+++||+++|+||||||||||||+|+|+++|+. |+|.++|. ..++
T Consensus 2 l~i~~ls~~~~-----~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~---G~i~~~~~------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFG-----AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSA---GNVSLDPN------ERLG 67 (530)
T ss_pred EEEEEEEEEeC-----CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecCC------CEEE
Confidence 68999999984 3579999999999999999999999999999999999998874 99999873 3589
Q ss_pred EEcCCCccCCCCCHHHHHHHHHH-h-----------cCCC---c----------------cchHHHHHHHHHHHcCCchH
Q 004932 186 FVERETTLIGSLTVREYLYYSAL-L-----------QLPG---F----------------FCQRKNVVEDAIHAMSLSDY 234 (723)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~-~-----------~~~~---~----------------~~~~~~~v~~~l~~lgL~~~ 234 (723)
|++|++.+++.+||+|++.++.. . ..+. . ..+.+++++++++.+||.+.
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 99999989999999999976421 0 0000 0 00123568889999999764
Q ss_pred h-hhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHh
Q 004932 235 A-NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 313 (723)
Q Consensus 235 ~-~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~ 313 (723)
. ++. +..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||+++|+. ..+.+
T Consensus 148 ~~~~~------~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~-~~~~~ 217 (530)
T PRK15064 148 QHYGL------MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDR-HFLNS 217 (530)
T ss_pred HhcCc------hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCH-HHHHh
Confidence 4 333 459999999999999999999999999999999999999999999864 588999988887 47889
Q ss_pred cCCEEEEEeCCeE-EEEeChhHHHH
Q 004932 314 LFDRICLLSNGNT-LFFGETLACLQ 337 (723)
Q Consensus 314 ~~D~v~vL~~G~i-v~~G~~~~~~~ 337 (723)
+||+|++|++|++ ++.|++++..+
T Consensus 218 ~~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 218 VCTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred hcceEEEEeCCEEEEecCCHHHHHH
Confidence 9999999999999 58898877653
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=296.90 Aligned_cols=166 Identities=30% Similarity=0.509 Sum_probs=145.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (723)
++++|+++.+.++ ...+++|+|+.+++||+++|+||||||||||+++|+|+++|.. |+|.++|++....
T Consensus 1 l~~~~l~~~~~~~---~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 74 (171)
T cd03228 1 IEFKNVSFSYPGR---PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTS---GEILIDGVDLRDLDLESL 74 (171)
T ss_pred CEEEEEEEEcCCC---CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---CEEEECCEEhhhcCHHHH
Confidence 3688999988531 1369999999999999999999999999999999999998875 9999999875321
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHH
Q 004932 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (723)
.+.++|++|++.+++ .|+.||+ |||||||||+|||
T Consensus 75 ~~~i~~~~~~~~~~~-~t~~e~l--------------------------------------------LS~G~~~rl~la~ 109 (171)
T cd03228 75 RKNIAYVPQDPFLFS-GTIRENI--------------------------------------------LSGGQRQRIAIAR 109 (171)
T ss_pred HhhEEEEcCCchhcc-chHHHHh--------------------------------------------hCHHHHHHHHHHH
Confidence 246899999987775 5888775 8999999999999
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 004932 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (723)
Q Consensus 261 aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (723)
+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|+++|++. ++.. ||++++|++|+
T Consensus 110 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 110 ALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 99999999999999999999999999999999964 689999989874 6666 99999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=300.93 Aligned_cols=190 Identities=22% Similarity=0.279 Sum_probs=159.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-CceE
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YGSY 184 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~-~~~~ 184 (723)
++++|+++.+. ++.++ ++|+++++||+++|+|+||||||||+++|+|+.+|+. |+|.++|.+.... .+.+
T Consensus 2 l~~~~l~~~~~-----~~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 2 LSLHQLQFNIE-----QKNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSS---GNIYYKNCNINNIAKPYC 72 (195)
T ss_pred eEEEEeeEEEC-----CcEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCcccChhhhhhE
Confidence 67899999983 23455 4999999999999999999999999999999998875 9999999865321 2458
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 004932 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (723)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~ 264 (723)
+|++|+..+++.+||.||+.+..... ...++++++++.+++.+..++.+ +.||||||||++|||||+.
T Consensus 73 ~~~~~~~~~~~~~tv~~~l~~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~~rl~la~al~~ 140 (195)
T PRK13541 73 TYIGHNLGLKLEMTVFENLKFWSEIY------NSAETLYAAIHYFKLHDLLDEKC------YSLSSGMQKIVAIARLIAC 140 (195)
T ss_pred EeccCCcCCCccCCHHHHHHHHHHhc------ccHHHHHHHHHHcCCHhhhccCh------hhCCHHHHHHHHHHHHHhc
Confidence 99999988888899999998754321 12346788899999988777654 4999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEE
Q 004932 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 318 (723)
Q Consensus 265 ~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v 318 (723)
+|++|+|||||+|||+.++..+.+.|++..+.|+|+|+++|++. .+ ..+|-|
T Consensus 141 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i-~~~~~~ 192 (195)
T PRK13541 141 QSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES-SI-KSAQIL 192 (195)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc-cc-chhhee
Confidence 99999999999999999999999999987778899999999974 33 336654
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=327.01 Aligned_cols=223 Identities=23% Similarity=0.314 Sum_probs=184.2
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--
Q 004932 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-- 180 (723)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~-- 180 (723)
...+.++++++.-+ ..++++|+|+||.+.+||.+||+||||||||||.|+|.|..+|.. |.|.+||.+....
T Consensus 332 ~g~L~Ve~l~~~PP---g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~---G~VRLDga~l~qWd~ 405 (580)
T COG4618 332 QGALSVERLTAAPP---GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTS---GSVRLDGADLRQWDR 405 (580)
T ss_pred CceeeEeeeeecCC---CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCC---CcEEecchhhhcCCH
Confidence 34689999988432 245789999999999999999999999999999999999999975 9999999875432
Q ss_pred ---CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHH
Q 004932 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGE 252 (723)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGe 252 (723)
-+.+||.||+-.||+. ||.||+. |...+ ...+.|-++.+..|..+..-+++.|++ ....|||||
T Consensus 406 e~lG~hiGYLPQdVeLF~G-TIaeNIa-----Rf~~~--~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQ 477 (580)
T COG4618 406 EQLGRHIGYLPQDVELFDG-TIAENIA-----RFGEE--ADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQ 477 (580)
T ss_pred HHhccccCcCcccceecCC-cHHHHHH-----hcccc--CCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchH
Confidence 2579999999999975 9999994 22211 123345555555555554433333332 335799999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004932 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
|||+++||||-.+|.+++||||-|+||......+.+.|.+++++|.|+|+++|.|+ +...+|+|++|++|++-.+|+.
T Consensus 478 RQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r 555 (580)
T COG4618 478 RQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPR 555 (580)
T ss_pred HHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCH
Confidence 99999999999999999999999999999999999999999999999999999985 6788999999999999999999
Q ss_pred hHHHHHhhh
Q 004932 333 LACLQHFSN 341 (723)
Q Consensus 333 ~~~~~~f~~ 341 (723)
+|++..+..
T Consensus 556 ~eVLa~~~~ 564 (580)
T COG4618 556 EEVLAKVLR 564 (580)
T ss_pred HHHHHHhcC
Confidence 999887653
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=293.89 Aligned_cols=163 Identities=29% Similarity=0.414 Sum_probs=143.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (723)
++++|+++.+++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|. +.++
T Consensus 1 i~~~~~~~~~~~----~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~~~------~~i~ 67 (166)
T cd03223 1 IELENLSLATPD----GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGS---GRIGMPEG------EDLL 67 (166)
T ss_pred CEEEEEEEEcCC----CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCC------ceEE
Confidence 368999998842 2469999999999999999999999999999999999998874 99999874 5699
Q ss_pred EEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 004932 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (723)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~ 265 (723)
|++|++.++ ..|++||+.+. .+++||||||||++|||||+.+
T Consensus 68 ~~~q~~~~~-~~tv~~nl~~~-------------------------------------~~~~LS~G~~~rv~laral~~~ 109 (166)
T cd03223 68 FLPQRPYLP-LGTLREQLIYP-------------------------------------WDDVLSGGEQQRLAFARLLLHK 109 (166)
T ss_pred EECCCCccc-cccHHHHhhcc-------------------------------------CCCCCCHHHHHHHHHHHHHHcC
Confidence 999998765 67999998541 1248999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCC
Q 004932 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (723)
Q Consensus 266 P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (723)
|++|+|||||+|||+.++..+.+.|+++ +.|+|+++|++. . ...||++++|++|
T Consensus 110 p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~-~-~~~~d~i~~l~~~ 163 (166)
T cd03223 110 PKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS-L-WKFHDRVLDLDGE 163 (166)
T ss_pred CCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh-H-HhhCCEEEEEcCC
Confidence 9999999999999999999999999986 589999999974 3 4799999999865
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=344.59 Aligned_cols=209 Identities=25% Similarity=0.305 Sum_probs=174.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (723)
..++++||++.|.+ ++.+|+||||++++||+++|+|||||||||||++|+|+++|++ |+|.+++. ..
T Consensus 5 ~~l~i~~l~~~y~~----~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~---G~i~~~~~------~~ 71 (556)
T PRK11819 5 YIYTMNRVSKVVPP----KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFE---GEARPAPG------IK 71 (556)
T ss_pred EEEEEeeEEEEeCC----CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecCC------CE
Confidence 36899999999941 3579999999999999999999999999999999999998875 99999752 46
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHH-h--------------cCCCc-c-------------------chHHHHHHHHHHH
Q 004932 184 YGFVERETTLIGSLTVREYLYYSAL-L--------------QLPGF-F-------------------CQRKNVVEDAIHA 228 (723)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~-~--------------~~~~~-~-------------------~~~~~~v~~~l~~ 228 (723)
++|++|++.+++.+||.||+.++.. . ..... . ....++++++++.
T Consensus 72 i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 151 (556)
T PRK11819 72 VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA 151 (556)
T ss_pred EEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence 9999999999999999999987531 0 00000 0 0113567888999
Q ss_pred cCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 004932 229 MSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (723)
Q Consensus 229 lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (723)
+||.. .++.+ .+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++. .|||+++|++
T Consensus 152 ~gl~~-~~~~~------~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~- 220 (556)
T PRK11819 152 LRCPP-WDAKV------TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDR- 220 (556)
T ss_pred CCCCc-ccCch------hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCH-
Confidence 99953 55544 4999999999999999999999999999999999999999999999873 4888888876
Q ss_pred HHHHhcCCEEEEEeCCeEE-EEeChhHHH
Q 004932 309 TEVFGLFDRICLLSNGNTL-FFGETLACL 336 (723)
Q Consensus 309 ~~i~~~~D~v~vL~~G~iv-~~G~~~~~~ 336 (723)
..+.++||+|++|++|+++ +.|+.++..
T Consensus 221 ~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 221 YFLDNVAGWILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred HHHHhhcCeEEEEeCCEEEEecCCHHHHH
Confidence 5788999999999999986 788877643
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=347.72 Aligned_cols=187 Identities=28% Similarity=0.387 Sum_probs=159.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----P 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----~ 180 (723)
.++++||++.|++ ++++|+|+|+++++||.+||+||||||||||+|+|+|+.+|++ |+|.+||.+... .
T Consensus 334 ~I~~~~vsf~Y~~----~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~---G~I~i~g~~i~~~~~~l 406 (529)
T TIGR02868 334 TLELRDLSFGYPG----SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQ---GEVTLDGVSVSSLQDEL 406 (529)
T ss_pred eEEEEEEEEecCC----CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEEhhhHHHHH
Confidence 5999999999953 2459999999999999999999999999999999999999975 999999987542 1
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHHHH
Q 004932 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERRR 255 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerqR 255 (723)
++.++||+|++.+|+. |++|||.++. + ...+++++++++..++.+..++++.|.+ ....||||||||
T Consensus 407 r~~i~~V~Q~~~lF~~-TI~eNI~~g~----~---~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQR 478 (529)
T TIGR02868 407 RRRISVFAQDAHLFDT-TVRDNLRLGR----P---DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQR 478 (529)
T ss_pred HhheEEEccCcccccc-cHHHHHhccC----C---CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHH
Confidence 3479999999999965 9999997641 1 1245678899999999877655544333 235699999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCC
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~ 307 (723)
++|||||+.+|+||+||||||+||+.++..|.+.|+++. +++|+|+++|++
T Consensus 479 iaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 479 LALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 999999999999999999999999999999999999864 478999999974
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=308.89 Aligned_cols=183 Identities=19% Similarity=0.232 Sum_probs=151.7
Q ss_pred eeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHh
Q 004932 130 NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALL 209 (723)
Q Consensus 130 s~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~ 209 (723)
++.+++||+++|+||||||||||+++|+|+++|+. |+|.++|. .++|++|+....+.+||+|++.+....
T Consensus 19 ~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~---G~i~~~g~-------~i~~~~q~~~~~~~~tv~e~l~~~~~~ 88 (246)
T cd03237 19 GGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDE---GDIEIELD-------TVSYKPQYIKADYEGTVRDLLSSITKD 88 (246)
T ss_pred cCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCC---CeEEECCc-------eEEEecccccCCCCCCHHHHHHHHhhh
Confidence 34445899999999999999999999999999875 99999984 589999998877789999999654321
Q ss_pred cCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 004932 210 QLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT 289 (723)
Q Consensus 210 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~ 289 (723)
.. ......+++++.++|.+..++.++ .|||||||||+||++|+.+|+++||||||++||+.++..+.+.
T Consensus 89 ~~-----~~~~~~~~~l~~l~l~~~~~~~~~------~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~ 157 (246)
T cd03237 89 FY-----THPYFKTEIAKPLQIEQILDREVP------ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKV 157 (246)
T ss_pred cc-----ccHHHHHHHHHHcCCHHHhhCChh------hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 11 112346788999999888777554 9999999999999999999999999999999999999999999
Q ss_pred HHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEE--EEeChhH
Q 004932 290 LKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTL--FFGETLA 334 (723)
Q Consensus 290 L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv--~~G~~~~ 334 (723)
|+++++ .|+|||+++|+. ..+..+||++++|+++..+ ..+++.+
T Consensus 158 l~~~~~~~~~tiiivsHd~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 158 IRRFAENNEKTAFVVEHDI-IMIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred HHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 999985 489999988886 5788899999999765433 3344444
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=302.58 Aligned_cols=213 Identities=27% Similarity=0.381 Sum_probs=180.9
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE----- 178 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~----- 178 (723)
..+.++|+++.+. +++||+|+|.+|+|||..+|+|||||||||||++++|..+|++ |.+.+.|+...
T Consensus 30 ~li~l~~v~v~r~-----gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pss---g~~~~~G~~~G~~~~~ 101 (257)
T COG1119 30 PLIELKNVSVRRN-----GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSS---GDVTLLGRRFGKGETI 101 (257)
T ss_pred ceEEecceEEEEC-----CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCC---CceeeeeeeccCCcch
Confidence 4689999999984 5789999999999999999999999999999999999999874 99999998632
Q ss_pred -CCCceEEEEcCC--CccCCCCCHHHHHHHHH--HhcCCC-ccc-hHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHH
Q 004932 179 -MPYGSYGFVERE--TTLIGSLTVREYLYYSA--LLQLPG-FFC-QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (723)
Q Consensus 179 -~~~~~~~yv~Q~--~~l~~~lTV~E~l~~~~--~~~~~~-~~~-~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGG 251 (723)
..++.||+|..+ ..+.+..+|+|.+.-+. ...... ... ...+++..+++.+|+.+.+++..+ .||-|
T Consensus 102 ~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~------~LS~G 175 (257)
T COG1119 102 FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG------SLSQG 175 (257)
T ss_pred HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh------hcCHh
Confidence 124578999653 44556778888874332 222221 122 256778999999999999999776 99999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 004932 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST--GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (723)
Q Consensus 252 erqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~--g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (723)
|||||-|||||+.+|++||||||++|||...+..+.+.|.+++.. +.++|+++||+ +++-..+++++++++|++++.
T Consensus 176 e~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~~ 254 (257)
T COG1119 176 EQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQ 254 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch-hhcccccceEEEeeCCceeec
Confidence 999999999999999999999999999999999999999999854 78999999998 589999999999999999998
Q ss_pred eC
Q 004932 330 GE 331 (723)
Q Consensus 330 G~ 331 (723)
|.
T Consensus 255 g~ 256 (257)
T COG1119 255 GK 256 (257)
T ss_pred cc
Confidence 74
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=342.71 Aligned_cols=204 Identities=25% Similarity=0.349 Sum_probs=174.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (723)
..++++||++.|. ++.+|+|+|+.+++||+++|+||||||||||+|+|+|+++|+. |+|.++|. +.
T Consensus 318 ~~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~---G~i~~~~~------~~ 383 (530)
T PRK15064 318 NALEVENLTKGFD-----NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDS---GTVKWSEN------AN 383 (530)
T ss_pred ceEEEEeeEEeeC-----CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCc------eE
Confidence 4689999999984 3469999999999999999999999999999999999998875 99999874 46
Q ss_pred EEEEcCCCc--cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCCHHHHHHHHHHH
Q 004932 184 YGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIAR 260 (723)
Q Consensus 184 ~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (723)
++|++|+.. +++.+||.|++.+.. .. ...+++++++++.+++. +..++.+ .+|||||||||+|||
T Consensus 384 i~~~~q~~~~~~~~~~t~~~~~~~~~---~~---~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgGq~qrv~la~ 451 (530)
T PRK15064 384 IGYYAQDHAYDFENDLTLFDWMSQWR---QE---GDDEQAVRGTLGRLLFSQDDIKKSV------KVLSGGEKGRMLFGK 451 (530)
T ss_pred EEEEcccccccCCCCCcHHHHHHHhc---cC---CccHHHHHHHHHHcCCChhHhcCcc------cccCHHHHHHHHHHH
Confidence 999999863 566799999985421 11 12345688999999994 6666654 499999999999999
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEE-EEeChhHHHH
Q 004932 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLACLQ 337 (723)
Q Consensus 261 aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~~~ 337 (723)
+|+.+|++|||||||+|||+.++..+.+.|+++ +.|||+++|++ ..+.++||++++|++|+++ +.|+++++.+
T Consensus 452 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 452 LMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 999999999999999999999999999999887 35899988887 5788999999999999998 8888876543
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=356.69 Aligned_cols=216 Identities=23% Similarity=0.332 Sum_probs=183.8
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (723)
..++++||++.|+. +...+||+|+|+++++|+.+||+|||||||||.+.+|-..+.|.. |.|.+||.+++.
T Consensus 986 G~I~~~~V~F~YPs--RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~---G~V~IDg~dik~lnl~ 1060 (1228)
T KOG0055|consen 986 GDIEFRNVSFAYPT--RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDA---GKVKIDGVDIKDLNLK 1060 (1228)
T ss_pred eEEEEeeeEeeCCC--CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCC---CeEEECCcccccCCHH
Confidence 36999999999974 356789999999999999999999999999999999999999975 999999988643
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHh-------hhhhcCCCCCCCCCHH
Q 004932 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYA-------NKLIGGHCYMKGLPCG 251 (723)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~ig~~~~~~~LSGG 251 (723)
.++++|.|.|+|.||. .|++||+.|+. .+ ...+++.++++..+..+.. |+.+| ++..+||||
T Consensus 1061 ~LR~~i~lVsQEP~LF~-~TIrENI~YG~-~~------vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vG--erG~QLSGG 1130 (1228)
T KOG0055|consen 1061 WLRKQIGLVSQEPVLFN-GTIRENIAYGS-EE------VSEEEIIEAAKLANAHNFISSLPQGYDTRVG--ERGVQLSGG 1130 (1228)
T ss_pred HHHHhcceeccCchhhc-ccHHHHHhccC-CC------CCHHHHHHHHHHhhhHHHHhcCcCcccCccC--cccCcCCch
Confidence 2467999999999996 59999999871 11 1345566777766655544 55554 345679999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004932 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 252 erqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
||||++|||||++||+||||||.||+||+++.+.+.+.|.+.. .|+|.|++.|.++ ..+.||.|+|+++|+|++.|+
T Consensus 1131 QKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi~~G~VvE~Gt 1207 (1228)
T KOG0055|consen 1131 QKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS--TIQNADVIAVLKNGKVVEQGT 1207 (1228)
T ss_pred HHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--hhhcCCEEEEEECCEEEeccc
Confidence 9999999999999999999999999999999999999999976 4788888899985 357899999999999999999
Q ss_pred hhHHHH
Q 004932 332 TLACLQ 337 (723)
Q Consensus 332 ~~~~~~ 337 (723)
=++++.
T Consensus 1208 H~~L~~ 1213 (1228)
T KOG0055|consen 1208 HDELLA 1213 (1228)
T ss_pred HHHHHh
Confidence 888765
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=376.54 Aligned_cols=216 Identities=20% Similarity=0.276 Sum_probs=184.7
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (723)
..++++||++.|++ ..+++|+|||++++|||.+||+|+||||||||+++|.|+++|++ |+|.+||.++..
T Consensus 1236 g~I~f~nVsf~Y~~---~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~---G~I~IDG~dI~~i~l~ 1309 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP---ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER---GRILIDGCDISKFGLM 1309 (1622)
T ss_pred CcEEEEEEEEEeCC---CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCC---ceEEECCEecccCCHH
Confidence 36999999999953 23469999999999999999999999999999999999999875 999999998643
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHH
Q 004932 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (723)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGer 253 (723)
.++++++|+|++.+|.. |++|||.+.. ...++.+.++++..++.+..+.++.|.+ ....||||||
T Consensus 1310 ~LR~~IsiVpQdp~LF~G-TIreNLd~~~--------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQr 1380 (1622)
T PLN03130 1310 DLRKVLGIIPQAPVLFSG-TVRFNLDPFN--------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQR 1380 (1622)
T ss_pred HHHhccEEECCCCccccc-cHHHHhCcCC--------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHH
Confidence 24679999999999975 9999996421 1245678899999999877666543332 2357999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|+|+++|..+ .+ ..||||++|++|+++++|+++
T Consensus 1381 QrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~-tI-~~~DrIlVLd~G~IvE~Gt~~ 1457 (1622)
T PLN03130 1381 QLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN-TI-IDCDRILVLDAGRVVEFDTPE 1457 (1622)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999975 4799999999985 44 459999999999999999999
Q ss_pred HHHH
Q 004932 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++++
T Consensus 1458 eLl~ 1461 (1622)
T PLN03130 1458 NLLS 1461 (1622)
T ss_pred HHHh
Confidence 9874
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=341.52 Aligned_cols=213 Identities=20% Similarity=0.254 Sum_probs=174.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++|+++.. +.+|+|||+.+++||+++|+||||||||||+|+|+|+.+|++ |+|.++|+++...
T Consensus 249 ~~i~~~~l~~~~-------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~ 318 (491)
T PRK10982 249 VILEVRNLTSLR-------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSA---GTITLHGKKINNHNAN 318 (491)
T ss_pred cEEEEeCccccc-------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCc---cEEEECCEECCCCCHH
Confidence 358999998752 359999999999999999999999999999999999998875 9999999875321
Q ss_pred ---CceEEEEcCCC---ccCCCCCHHHHHHHHHH---hcCCC--ccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCC
Q 004932 181 ---YGSYGFVERET---TLIGSLTVREYLYYSAL---LQLPG--FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGL 248 (723)
Q Consensus 181 ---~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~---~~~~~--~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~L 248 (723)
++.++|++|+. .+++.+|+.+|..+... ..... .....++.++++++.+++. +..++. +.+|
T Consensus 319 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~L 392 (491)
T PRK10982 319 EAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ------IGSL 392 (491)
T ss_pred HHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc------cccC
Confidence 23489999985 46888888877432210 01001 1112345678899999995 455654 4599
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 004932 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (723)
Q Consensus 249 SGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (723)
||||||||+|||+|+.+|+||||||||+|||+.++..+++.|++++++|.|||+++|+. .++.++|||+++|++|+++.
T Consensus 393 SgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~-~~~~~~~d~v~~l~~g~i~~ 471 (491)
T PRK10982 393 SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEM-PELLGITDRILVMSNGLVAG 471 (491)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCCh-HHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999998899999998887 57889999999999999998
Q ss_pred EeChh
Q 004932 329 FGETL 333 (723)
Q Consensus 329 ~G~~~ 333 (723)
.++++
T Consensus 472 ~~~~~ 476 (491)
T PRK10982 472 IVDTK 476 (491)
T ss_pred EEccc
Confidence 77653
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=286.46 Aligned_cols=192 Identities=21% Similarity=0.352 Sum_probs=168.1
Q ss_pred cccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----CceEEEEcCCCccCC
Q 004932 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----YGSYGFVERETTLIG 195 (723)
Q Consensus 121 ~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~-----~~~~~yv~Q~~~l~~ 195 (723)
.+.++|+++|+.+.+||..+|.||||||||||+|+++-+.+|++ |++++.|++.... +.+++||.|.+.||+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~---G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTS---GTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCC---ceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 45689999999999999999999999999999999999999985 9999999986432 357999999999998
Q ss_pred CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchH-hhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 004932 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274 (723)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEP 274 (723)
. ||++|+.|+-+++.... .+.+..+.++.+++.+. +++.+ .+||||||||++|+|-|..-|+||+||||
T Consensus 91 ~-tVeDNlifP~~~r~rr~---dr~aa~~llar~~l~~~~L~k~i------t~lSGGE~QriAliR~Lq~~P~ILLLDE~ 160 (223)
T COG4619 91 D-TVEDNLIFPWQIRNRRP---DRAAALDLLARFALPDSILTKNI------TELSGGEKQRIALIRNLQFMPKILLLDEI 160 (223)
T ss_pred c-chhhccccchHHhccCC---ChHHHHHHHHHcCCchhhhcchh------hhccchHHHHHHHHHHhhcCCceEEecCc
Confidence 6 99999999876654322 34567788999999754 55544 48999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004932 275 LYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 275 TsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
||+||+.+++.|.++|.++. +++..++.++|++ ++..+.+|+++-+..|++
T Consensus 161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~-dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDK-DQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhhcChhhHHHHHHHHHHHhhhhceEEEEEecCh-HHHhhhhheEEEeccCcc
Confidence 99999999999999999997 6788999999988 477789999999999875
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-36 Score=375.85 Aligned_cols=215 Identities=19% Similarity=0.267 Sum_probs=183.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++||++.|++ ..+++|+|+|++++|||.+||+|+||||||||+++|.|+++|++ |+|.+||.++..
T Consensus 1234 ~I~f~nVsf~Y~~---~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~---G~I~IdG~di~~i~~~~ 1307 (1495)
T PLN03232 1234 SIKFEDVHLRYRP---GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEK---GRIMIDDCDVAKFGLTD 1307 (1495)
T ss_pred cEEEEEEEEEECC---CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCC---ceEEECCEEhhhCCHHH
Confidence 5999999999952 23579999999999999999999999999999999999999975 999999998642
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (723)
.++++++|+|++.+|+. |++|||.+. . ...++.+.++++..++.+..++...|.+ ....|||||||
T Consensus 1308 lR~~i~iVpQdp~LF~g-TIr~NL~~~------~--~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ 1378 (1495)
T PLN03232 1308 LRRVLSIIPQSPVLFSG-TVRFNIDPF------S--EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQ 1378 (1495)
T ss_pred HHhhcEEECCCCeeeCc-cHHHHcCCC------C--CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHH
Confidence 24579999999999975 999999542 1 1245678899999999877665543322 33579999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|+|+++|+.+ .+ ..||||++|++|++++.|++++
T Consensus 1379 rlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~-ti-~~~DrIlVL~~G~ivE~Gt~~e 1455 (1495)
T PLN03232 1379 LLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN-TI-IDCDKILVLSSGQVLEYDSPQE 1455 (1495)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999875 4789999999984 44 4599999999999999999998
Q ss_pred HHH
Q 004932 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
+++
T Consensus 1456 Ll~ 1458 (1495)
T PLN03232 1456 LLS 1458 (1495)
T ss_pred HHh
Confidence 764
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=340.93 Aligned_cols=214 Identities=22% Similarity=0.341 Sum_probs=171.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (723)
..++++|+++.|. ++.+|+|+|+.+++||+++|+||||||||||+|+|+|+.++. .+|+|.++|++...
T Consensus 259 ~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~--~~G~i~~~g~~~~~~~~~ 331 (490)
T PRK10938 259 PRIVLNNGVVSYN-----DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQG--YSNDLTLFGRRRGSGETI 331 (490)
T ss_pred ceEEEeceEEEEC-----CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcc--cCCeEEEecccCCCCCCH
Confidence 4689999999984 346999999999999999999999999999999999987651 14999999975321
Q ss_pred --CCceEEEEcCCCccCC--CCCHHHHHHHHHHh--cCCC-ccchHHHHHHHHHHHcCCch-HhhhhhcCCCCCCCCCHH
Q 004932 180 --PYGSYGFVERETTLIG--SLTVREYLYYSALL--QLPG-FFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCG 251 (723)
Q Consensus 180 --~~~~~~yv~Q~~~l~~--~lTV~E~l~~~~~~--~~~~-~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGG 251 (723)
.++.++|++|++.++. ..|+++++.+.... .... .....+++++++++.++|.+ ..++.+ .+||||
T Consensus 332 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgG 405 (490)
T PRK10938 332 WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPF------HSLSWG 405 (490)
T ss_pred HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCch------hhCCHH
Confidence 1246899999876543 35777776543211 1111 11123456889999999987 776654 499999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEEeCChHHHHh-cCCEEEEEeCCeEEEE
Q 004932 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTG-CTLLFTINQSSTEVFG-LFDRICLLSNGNTLFF 329 (723)
Q Consensus 252 erqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvi~t~h~~~~~i~~-~~D~v~vL~~G~iv~~ 329 (723)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++| .|||+++|++ .++.+ +||++++|++|++++.
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~-~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA-EDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch-hhhhhhhheeEEEecCCceEEe
Confidence 9999999999999999999999999999999999999999998776 4689988887 46766 6999999999999876
Q ss_pred eC
Q 004932 330 GE 331 (723)
Q Consensus 330 G~ 331 (723)
-.
T Consensus 485 ~~ 486 (490)
T PRK10938 485 VQ 486 (490)
T ss_pred ec
Confidence 44
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=343.48 Aligned_cols=200 Identities=26% Similarity=0.403 Sum_probs=169.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++||++.|+++ ++++|+|+|+++++||.+||+||||||||||+|+|+|+.+|+. |+|.+||.+....
T Consensus 320 ~i~~~~v~f~y~~~---~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~I~~~g~~i~~~~~~~ 393 (529)
T TIGR02857 320 SLEFSGLSVAYPGR---RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTE---GSIAVNGVPLADADADS 393 (529)
T ss_pred eEEEEEEEEECCCC---CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEehhhCCHHH
Confidence 68999999999632 2469999999999999999999999999999999999999975 9999999875421
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHHH
Q 004932 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (723)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerq 254 (723)
++.++||+|++.+|+ .|++||+.++. +. ..++.+.++++..++.+..++...|.+ ....|||||||
T Consensus 394 lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~~---~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~q 465 (529)
T TIGR02857 394 WRDQIAWVPQHPFLFA-GTIAENIRLAR----PD---ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQ 465 (529)
T ss_pred HHhheEEEcCCCcccC-cCHHHHHhccC----CC---CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHH
Confidence 357999999999986 59999997631 11 134678889999999877665543322 34679999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (723)
|++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|+++ . .+.||+|++|
T Consensus 466 ri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~-~~~~d~i~~l 529 (529)
T TIGR02857 466 RLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA-L-AERADRIVVL 529 (529)
T ss_pred HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-H-HHhCCEEEeC
Confidence 9999999999999999999999999999999999999985 5789999999974 3 4679999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=340.40 Aligned_cols=209 Identities=24% Similarity=0.286 Sum_probs=170.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (723)
.++++||++.|.+ .+.+|+|+|+.+++||+++|+|||||||||||++|+|+.+|+. |+|.+++. ..+
T Consensus 4 ~i~~~nls~~~~~----~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~---G~i~~~~~------~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP----KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFN---GEARPAPG------IKV 70 (552)
T ss_pred EEEEeeEEEecCC----CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecCC------CEE
Confidence 5899999999841 3469999999999999999999999999999999999998874 99999762 469
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHh---------------cCCCccc--------------------hHHHHHHHHHHHc
Q 004932 185 GFVERETTLIGSLTVREYLYYSALL---------------QLPGFFC--------------------QRKNVVEDAIHAM 229 (723)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~---------------~~~~~~~--------------------~~~~~v~~~l~~l 229 (723)
+|++|++.+++.+||.||+.++... ..+.... ....+++++++.+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 9999999999999999999875321 0000000 0013455666667
Q ss_pred CCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChH
Q 004932 230 SLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 309 (723)
Q Consensus 230 gL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~ 309 (723)
|+.. .++ .+..|||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||+++|+. .
T Consensus 151 ~l~~-~~~------~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~-~ 219 (552)
T TIGR03719 151 RCPP-WDA------DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDR-Y 219 (552)
T ss_pred CCCc-ccC------chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCH-H
Confidence 7643 344 44599999999999999999999999999999999999999999999876 35888888876 5
Q ss_pred HHHhcCCEEEEEeCCeEE-EEeChhHHHH
Q 004932 310 EVFGLFDRICLLSNGNTL-FFGETLACLQ 337 (723)
Q Consensus 310 ~i~~~~D~v~vL~~G~iv-~~G~~~~~~~ 337 (723)
.+..+||++++|++|+++ +.|+.++..+
T Consensus 220 ~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 220 FLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred HHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 788999999999999976 7788876544
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=340.28 Aligned_cols=204 Identities=18% Similarity=0.180 Sum_probs=170.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++|+++.|++ ++++|+|+|+++++||.+||+||||||||||+++|+|+++|+. |+|.+||++...
T Consensus 322 ~i~~~~v~f~y~~----~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g~~~~~~~~~~ 394 (547)
T PRK10522 322 TLELRNVTFAYQD----NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQS---GEILLDGKPVTAEQPED 394 (547)
T ss_pred eEEEEEEEEEeCC----CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEECCCCCHHH
Confidence 6899999999952 2469999999999999999999999999999999999999875 999999998642
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (723)
.++.++|++|++.+++ .|++||- + ...++.+++.++.+++.+..+..-+ ......||||||||++||
T Consensus 395 ~~~~i~~v~q~~~lf~-~ti~~n~--------~---~~~~~~~~~~~~~~~l~~~~~~~~~-~~~G~~LSgGq~qRl~lA 461 (547)
T PRK10522 395 YRKLFSAVFTDFHLFD-QLLGPEG--------K---PANPALVEKWLERLKMAHKLELEDG-RISNLKLSKGQKKRLALL 461 (547)
T ss_pred HhhheEEEecChhHHH-Hhhcccc--------C---chHHHHHHHHHHHcCCchhhhcccc-CCCCCCCCHHHHHHHHHH
Confidence 1357999999998886 4777761 1 1245567889999999765543111 111358999999999999
Q ss_pred HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 260 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
|||+.+|++|+||||||+||+.++..+.+.|.++. +.++|+|+++|++. ..+.||+|++|++|++++..
T Consensus 462 Ral~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 462 LALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSELT 531 (547)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEEec
Confidence 99999999999999999999999999999998765 45899999999973 46789999999999998763
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=284.27 Aligned_cols=223 Identities=23% Similarity=0.331 Sum_probs=191.0
Q ss_pred eEEEEeEEEEEeccc----ccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 004932 105 SVVWKDLTVTIKGKR----RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~- 179 (723)
.++++|+++++.... +....+++.|||++++|+.+||+|.||||||||.|+|+|.++|++ |+|++||++...
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTs---G~il~n~~~L~~~ 80 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS---GEILINDHPLHFG 80 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCC---ceEEECCcccccc
Confidence 468899998886431 233468999999999999999999999999999999999999986 999999987532
Q ss_pred ----CCceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCCHHH
Q 004932 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (723)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGe 252 (723)
..+.+-+++||+ .+.|.+.+.+.|..+.++........+.+++.+.|+.+||- +.++- +++-||-||
T Consensus 81 Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~------~~~~la~~Q 154 (267)
T COG4167 81 DYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANY------YPHMLAPGQ 154 (267)
T ss_pred chHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCcccccc------chhhcCchh
Confidence 235678888885 68899999999988876654444445778899999999994 45544 567999999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004932 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
||||++||||+.+|+|+|.||...+||...+.++++++-+|.+ .|.+-|.++.|. ..+.+++|+|+||++|++|+.|+
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qhl-G~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHI-GMIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechh-hHhhhhcccEEEEecCceeecCC
Confidence 9999999999999999999999999999999999999999984 689999876665 68999999999999999999999
Q ss_pred hhHHHH
Q 004932 332 TLACLQ 337 (723)
Q Consensus 332 ~~~~~~ 337 (723)
+.+++.
T Consensus 234 t~~v~a 239 (267)
T COG4167 234 TADVLA 239 (267)
T ss_pred hhhhhc
Confidence 998864
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=370.73 Aligned_cols=216 Identities=19% Similarity=0.228 Sum_probs=183.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (723)
..++++||++.|++ ....+|+||||+|+|||.+||+|+||||||||+++|.|+++|++ |+|.+||.++..
T Consensus 1307 G~I~f~nVsf~Y~~---~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~---G~I~IDG~di~~i~l~ 1380 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE---GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCG---GEIRVNGREIGAYGLR 1380 (1560)
T ss_pred CeEEEEEEEEEeCC---CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEcccCCHH
Confidence 36999999999953 22459999999999999999999999999999999999999875 999999998643
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHH
Q 004932 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (723)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGer 253 (723)
.++.++||+|++.+|.. ||+|||... . ...++.+.++++.+++.+....+.+|.+ ....||||||
T Consensus 1381 ~LR~~I~iVpQdp~LF~g-TIreNIdp~------~--~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQr 1451 (1560)
T PTZ00243 1381 ELRRQFSMIPQDPVLFDG-TVRQNVDPF------L--EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQR 1451 (1560)
T ss_pred HHHhcceEECCCCccccc-cHHHHhCcc------c--CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHH
Confidence 24679999999999975 999999421 1 1245679999999999877655443322 2357999999
Q ss_pred HHHHHHHHHhhC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004932 254 RRVRIARELVMR-PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 254 qRv~IA~aL~~~-P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
||++|||||+++ |+|||||||||+||+.+...|.+.|++.. +++|+|+++|... ....||+|++|++|++++.|++
T Consensus 1452 QrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~G~VvE~Gt~ 1528 (1560)
T PTZ00243 1452 QLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDHGAVAEMGSP 1528 (1560)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEECCEEEEECCH
Confidence 999999999996 89999999999999999999999999864 4789999999974 4467999999999999999999
Q ss_pred hHHHH
Q 004932 333 LACLQ 337 (723)
Q Consensus 333 ~~~~~ 337 (723)
+++++
T Consensus 1529 ~eLl~ 1533 (1560)
T PTZ00243 1529 RELVM 1533 (1560)
T ss_pred HHHHh
Confidence 98764
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=371.71 Aligned_cols=216 Identities=20% Similarity=0.251 Sum_probs=183.9
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (723)
..++++||++.|+.. .+.+|+|||++++|||.+||+|+||||||||+++|.|+++|++ |+|.+||.++..
T Consensus 1283 g~I~f~nVsf~Y~~~---~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~---G~I~IdG~dI~~i~~~ 1356 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED---LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE---GEIIIDGLNIAKIGLH 1356 (1522)
T ss_pred CcEEEEEEEEEeCCC---CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCC---CeEEECCEEccccCHH
Confidence 369999999999632 2469999999999999999999999999999999999999875 999999998643
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHH
Q 004932 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (723)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGer 253 (723)
.++++++|+|++.+|+. |++|||... . ...++.+.++++..++.+..++.++|.+ ....||||||
T Consensus 1357 ~LR~~i~iVpQdp~LF~g-TIr~NLdp~------~--~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1427 (1522)
T TIGR00957 1357 DLRFKITIIPQDPVLFSG-SLRMNLDPF------S--QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQR 1427 (1522)
T ss_pred HHHhcCeEECCCCcccCc-cHHHHcCcc------c--CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHH
Confidence 24579999999999975 999999521 1 1245668899999999877666544332 2356999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|+|+++|++. . ...||||++|++|+++++|+++
T Consensus 1428 Qrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~-t-i~~~DrIlVld~G~IvE~G~~~ 1504 (1522)
T TIGR00957 1428 QLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN-T-IMDYTRVIVLDKGEVAEFGAPS 1504 (1522)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-H-HHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999865 4789999999974 3 4569999999999999999999
Q ss_pred HHHH
Q 004932 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++++
T Consensus 1505 eLl~ 1508 (1522)
T TIGR00957 1505 NLLQ 1508 (1522)
T ss_pred HHHh
Confidence 8865
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=335.46 Aligned_cols=204 Identities=20% Similarity=0.254 Sum_probs=169.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (723)
..++++||++.|. ++.+|+|||+++++||+++|+||||||||||+++|+|+++|++ |+|.+++. ..
T Consensus 323 ~~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~---G~i~~~~~------~~ 388 (556)
T PRK11819 323 KVIEAENLSKSFG-----DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDS---GTIKIGET------VK 388 (556)
T ss_pred eEEEEEeEEEEEC-----CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCc------eE
Confidence 4689999999984 3469999999999999999999999999999999999998875 99999542 25
Q ss_pred EEEEcCCC-ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 184 YGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 184 ~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+||++|+. .+++.+||.|++.+........ .....++++++.+++.+ ..++.+ .+|||||||||+|||+
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgG~~qrv~la~a 459 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIKVG---NREIPSRAYVGRFNFKGGDQQKKV------GVLSGGERNRLHLAKT 459 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhccccccc---ccHHHHHHHHHhCCCChhHhcCch------hhCCHHHHHHHHHHHH
Confidence 89999996 7888999999998754221111 11234567899999964 556654 4999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC-CeEE-EEeChhH
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-GNTL-FFGETLA 334 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~-G~iv-~~G~~~~ 334 (723)
|+.+|++|||||||+|||+.++..+.+.|+++. | |||+++|++ ..+.++||++++|++ |+++ +.|+.++
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~-~~~~~~~d~i~~l~~~g~~~~~~g~~~~ 530 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDR-WFLDRIATHILAFEGDSQVEWFEGNFQE 530 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCH-HHHHHhCCEEEEEECCCeEEEecCCHHH
Confidence 999999999999999999999999999999873 4 788878876 578899999999985 7876 4565544
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=335.27 Aligned_cols=198 Identities=24% Similarity=0.280 Sum_probs=171.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (723)
..++++|+++.|.+ ..|+++|+.+++||+++|+||||||||||+|+|+|+++|+. |+|.++ ..
T Consensus 339 ~~l~~~~ls~~~~~------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~---G~I~~~--------~~ 401 (590)
T PRK13409 339 TLVEYPDLTKKLGD------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDE---GEVDPE--------LK 401 (590)
T ss_pred eEEEEcceEEEECC------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEEe--------ee
Confidence 46899999998831 35999999999999999999999999999999999999875 999986 25
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 004932 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (723)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~ 263 (723)
++|++|+..+.+.+||+|++.+... ... ....++++++.++|.+..++.+ ..|||||||||+|||+|+
T Consensus 402 i~y~~Q~~~~~~~~tv~e~l~~~~~-~~~-----~~~~~~~~L~~l~l~~~~~~~~------~~LSGGe~QRvaiAraL~ 469 (590)
T PRK13409 402 ISYKPQYIKPDYDGTVEDLLRSITD-DLG-----SSYYKSEIIKPLQLERLLDKNV------KDLSGGELQRVAIAACLS 469 (590)
T ss_pred EEEecccccCCCCCcHHHHHHHHhh-hcC-----hHHHHHHHHHHCCCHHHHhCCc------ccCCHHHHHHHHHHHHHh
Confidence 8999999888889999999976421 111 1235788999999998887755 499999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004932 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 264 ~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
.+|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++..+|||+++|+ |++...|..
T Consensus 470 ~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~-~~~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 470 RDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI-YMIDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEc-Ccceeeeec
Confidence 99999999999999999999999999999986 489999988886 57889999999995 588877763
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=334.14 Aligned_cols=203 Identities=21% Similarity=0.251 Sum_probs=168.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (723)
..++++|+++.|. ++.+|+|+|+.+++||+++|+||||||||||+++|+|+++|++ |+|.+++. ..
T Consensus 321 ~~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---G~i~~~~~------~~ 386 (552)
T TIGR03719 321 KVIEAENLSKGFG-----DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDS---GTIKIGET------VK 386 (552)
T ss_pred eEEEEeeEEEEEC-----CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---eEEEECCc------eE
Confidence 4689999999984 3579999999999999999999999999999999999998875 99999542 25
Q ss_pred EEEEcCCC-ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 184 YGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 184 ~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
++|++|+. .+++.+||.|++.+....... .....+++++++.+++.+ ..++.+ ..|||||||||+|||+
T Consensus 387 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgGe~qrv~la~a 457 (552)
T TIGR03719 387 LAYVDQSRDALDPNKTVWEEISGGLDIIQL---GKREVPSRAYVGRFNFKGSDQQKKV------GQLSGGERNRVHLAKT 457 (552)
T ss_pred EEEEeCCccccCCCCcHHHHHHhhcccccc---CcchHHHHHHHHhCCCChhHhcCch------hhCCHHHHHHHHHHHH
Confidence 89999986 578889999999875421111 112234567899999964 456644 4999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC-CeEE-EEeChh
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-GNTL-FFGETL 333 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~-G~iv-~~G~~~ 333 (723)
|+.+|++|||||||+|||+.++..+.+.|+++. + |||+++|++ ..+.++||++++|++ |+++ +.|+.+
T Consensus 458 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~~ 527 (552)
T TIGR03719 458 LKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDR-WFLDRIATHILAFEGDSHVEWFEGNYS 527 (552)
T ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCCHH
Confidence 999999999999999999999999999999983 3 788888876 578899999999986 5876 445543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=366.92 Aligned_cols=212 Identities=20% Similarity=0.315 Sum_probs=173.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC-CEeCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN-GAKSEM---- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~-G~~~~~---- 179 (723)
.++++||++.|+.+ .++++|+|+|+++++||++||+||||||||||+++|+|+++|+. |+|.++ |.++..
T Consensus 382 ~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~---G~I~i~~g~~i~~~~~~ 456 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR--KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTE---GDIIINDSHNLKDINLK 456 (1466)
T ss_pred cEEEEEEEEEcCCC--CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCC---CeEEEeCCcchhhCCHH
Confidence 58999999999632 23469999999999999999999999999999999999999975 999995 565421
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHh-cC---------C------------------------------------
Q 004932 180 -PYGSYGFVERETTLIGSLTVREYLYYSALL-QL---------P------------------------------------ 212 (723)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~-~~---------~------------------------------------ 212 (723)
.++.++||+|++.+|+ .||+||+.++... +. +
T Consensus 457 ~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 535 (1466)
T PTZ00265 457 WWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELI 535 (1466)
T ss_pred HHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhh
Confidence 1356999999999997 5999999885310 00 0
Q ss_pred ----CccchHHHHHHHHHHHcCCchHhhhhhcCC-----CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 004932 213 ----GFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (723)
Q Consensus 213 ----~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~ 283 (723)
......++.+.++++.+++.+..+++..|. .....||||||||++|||||+.+|+|||||||||+||+.++
T Consensus 536 ~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se 615 (1466)
T PTZ00265 536 EMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSE 615 (1466)
T ss_pred hcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 000113456888999999988765544322 34678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCC
Q 004932 284 LLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (723)
Q Consensus 284 ~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (723)
..|.+.|+++++ +|+|+|+++|+++ .+ +.||+|++|++|
T Consensus 616 ~~i~~~L~~~~~~~g~TvIiIsHrls-~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 616 YLVQKTINNLKGNENRITIIIAHRLS-TI-RYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCHH-HH-HhCCEEEEEeCC
Confidence 999999999985 5899999999985 44 689999999986
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=283.01 Aligned_cols=217 Identities=22% Similarity=0.332 Sum_probs=186.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC-EeCCC---
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-AKSEM--- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G-~~~~~--- 179 (723)
..+.++||++++. +.++|+++||.+.+||+-+|+|||||||||++++|+|..+|+. |+|+++| .++..
T Consensus 4 ~iL~~~~vsVsF~-----GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~---G~v~f~g~~dl~~~~e 75 (249)
T COG4674 4 IILYLDGVSVSFG-----GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQE---GEVLFDGDTDLTKLPE 75 (249)
T ss_pred ceEEEeceEEEEc-----ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCc---ceEEEcCchhhccCCH
Confidence 4689999999994 5679999999999999999999999999999999999999875 9999999 44322
Q ss_pred ---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCC-------ccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCC
Q 004932 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPG-------FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249 (723)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-------~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LS 249 (723)
.+..||--+|.+..|..+||+|||..+.....+- ...+.+++++++|+..||.+.++...+ .||
T Consensus 76 ~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~------~LS 149 (249)
T COG4674 76 HRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA------LLS 149 (249)
T ss_pred HHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh------hhc
Confidence 2345788899999999999999998875432110 111245689999999999999998776 899
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 004932 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (723)
Q Consensus 250 GGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (723)
.||||++.|++-|+++|++|++|||++|+--....+.-++|+.++. +.+|++ +.|+...+.+++|+|-+|++|.+...
T Consensus 150 HGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilV-VEHDM~Fvr~~A~~VTVlh~G~VL~E 227 (249)
T COG4674 150 HGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILV-VEHDMGFVREIADKVTVLHEGSVLAE 227 (249)
T ss_pred cchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEE-EeccHHHHHHhhheeEEEeccceeec
Confidence 9999999999999999999999999999999999999999999985 456666 45556899999999999999999999
Q ss_pred eChhHHH
Q 004932 330 GETLACL 336 (723)
Q Consensus 330 G~~~~~~ 336 (723)
|+.+++.
T Consensus 228 Gsld~v~ 234 (249)
T COG4674 228 GSLDEVQ 234 (249)
T ss_pred ccHHHhh
Confidence 9988764
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=296.62 Aligned_cols=207 Identities=26% Similarity=0.340 Sum_probs=173.2
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC----ceEEEEc-CCCccCCC
Q 004932 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY----GSYGFVE-RETTLIGS 196 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~----~~~~yv~-Q~~~l~~~ 196 (723)
...+++||||.+.+|++++++|+|||||||+||+|+|++.|++ |.|.++|......+ +++++|+ |...+...
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~---G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wd 112 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTS---GKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWD 112 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCC---CeEEecCcCcchhHHHHHHHHHHHhhhhheeeee
Confidence 3458999999999999999999999999999999999999986 99999998643221 3466663 55566666
Q ss_pred CCHHHHHHHHHHh-cCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 004932 197 LTVREYLYYSALL-QLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPL 275 (723)
Q Consensus 197 lTV~E~l~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPT 275 (723)
+.+.|.+...... ..|. ..-+++.+.+.+.++|+...+.. +|.||-|||.|+.||.+|+++|+||||||||
T Consensus 113 lp~~ds~~v~~~Iy~Ipd--~~F~~r~~~l~eiLdl~~~lk~~------vr~LSlGqRmraeLaaaLLh~p~VLfLDEpT 184 (325)
T COG4586 113 LPALDSLEVLKLIYEIPD--DEFAERLDFLTEILDLEGFLKWP------VRKLSLGQRMRAELAAALLHPPKVLFLDEPT 184 (325)
T ss_pred chhhhhHHHHHHHHhCCH--HHHHHHHHHHHHHhcchhhhhhh------hhhccchHHHHHHHHHHhcCCCcEEEecCCc
Confidence 6677776543322 2222 12457788999999999888774 4699999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHhh
Q 004932 276 YHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFS 340 (723)
Q Consensus 276 sgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~ 340 (723)
-|||..++..|.+.|++.. +++.||+.|+|.- +.+.++||||++|+.|+++|+|+.+++.+.|.
T Consensus 185 vgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~-~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 185 VGLDVNAQANIREFLKEYNEERQATVLLTTHIF-DDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred cCcchhHHHHHHHHHHHHHHhhCceEEEEecch-hhHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 9999999999999999998 5689999988876 58999999999999999999999999876554
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=303.93 Aligned_cols=198 Identities=21% Similarity=0.219 Sum_probs=162.6
Q ss_pred eEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCC
Q 004932 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSE 178 (723)
Q Consensus 110 ~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~-----------i~G~~~~ 178 (723)
+|++.|.. .+.+|+|+| .+++||+++|+||||||||||||+|+|+++|+. |+|. ++|++..
T Consensus 5 ~~~~~y~~----~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~---G~I~~~~~~~~~~~~~~g~~~~ 76 (255)
T cd03236 5 EPVHRYGP----NSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNL---GKFDDPPDWDEILDEFRGSELQ 76 (255)
T ss_pred CcceeecC----cchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCC---ceEeeccccchhhhhccCchhh
Confidence 56777731 235999999 599999999999999999999999999999875 9996 7786542
Q ss_pred C-----C--CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHH
Q 004932 179 M-----P--YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (723)
Q Consensus 179 ~-----~--~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGG 251 (723)
. . ...++|++|+..+++. ++.+++.+.. . . ...++.+.++++.+||.+..++.+ ..||||
T Consensus 77 ~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l--~--~--~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G 143 (255)
T cd03236 77 NYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL--K--K--KDERGKLDELVDQLELRHVLDRNI------DQLSGG 143 (255)
T ss_pred hhhHHhhhcccceeeecchhccCch-HHHHHHHHHh--c--h--hHHHHHHHHHHHHcCCchhhcCCh------hhCCHH
Confidence 1 1 1136899998887774 8888886532 1 1 123456889999999988777654 499999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 252 erqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++++|||+++|++ ..+.++||+|++| +|++++.|
T Consensus 144 ~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~-~~~~~~ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 144 ELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDL-AVLDYLSDYIHCL-YGEPGAYG 220 (255)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEE-CCCCCcce
Confidence 99999999999999999999999999999999999999999988889999988886 5778899999999 56676544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=362.81 Aligned_cols=215 Identities=19% Similarity=0.243 Sum_probs=182.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (723)
..++++||+++|+. ..+.+|+|||++++|||.+||+|+||||||||+++|+|+++ . +|+|.+||.++..
T Consensus 1216 g~I~f~nVs~~Y~~---~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~---~G~I~IdG~di~~i~~~ 1288 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE---AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T---EGEIQIDGVSWNSVTLQ 1288 (1490)
T ss_pred CeEEEEEEEEEeCC---CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEcccCCHH
Confidence 36999999999963 23579999999999999999999999999999999999986 3 4999999998643
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHH
Q 004932 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (723)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGer 253 (723)
.++.++||||++.+|+. ||+|||... . ...++.+.++++.++|.+...+.++|.+ ....||||||
T Consensus 1289 ~lR~~is~IpQdp~LF~G-TIR~NLdp~------~--~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQr 1359 (1490)
T TIGR01271 1289 TWRKAFGVIPQKVFIFSG-TFRKNLDPY------E--QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHK 1359 (1490)
T ss_pred HHHhceEEEeCCCccCcc-CHHHHhCcc------c--CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHH
Confidence 24579999999999975 999999431 1 1245678999999999876655543322 2346999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||++|||||+++|+|||||||||+||+.+...|.+.|++.. +++|||+++|.+. . ...||||++|++|+++++|+++
T Consensus 1360 QrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~-t-i~~~DrIlvL~~G~ivE~g~p~ 1436 (1490)
T TIGR01271 1360 QLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE-A-LLECQQFLVIEGSSVKQYDSIQ 1436 (1490)
T ss_pred HHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-H-HHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999875 4789999999874 3 4559999999999999999999
Q ss_pred HHHH
Q 004932 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++++
T Consensus 1437 ~Ll~ 1440 (1490)
T TIGR01271 1437 KLLN 1440 (1490)
T ss_pred HHHc
Confidence 8864
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=315.19 Aligned_cols=216 Identities=24% Similarity=0.344 Sum_probs=177.4
Q ss_pred CCceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--
Q 004932 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-- 179 (723)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~-- 179 (723)
.+..++++||++.|. .++++|+||||++.||+.+||+||||+||||++|+|..+.... +|.|.+||++++.
T Consensus 534 ~~G~i~fsnvtF~Y~----p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt 606 (790)
T KOG0056|consen 534 TQGKIEFSNVTFAYD----PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVT 606 (790)
T ss_pred cCCeEEEEEeEEecC----CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHH
Confidence 456799999999996 4678999999999999999999999999999999999998765 4999999998642
Q ss_pred ---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHc-------CCchHhhhhhcCCCCCCCCC
Q 004932 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM-------SLSDYANKLIGGHCYMKGLP 249 (723)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~ig~~~~~~~LS 249 (723)
.++.+|.||||..+|.+ |+..|+.|+. |. ..++.|.++.+.. +..+-.++.+| ++.-.||
T Consensus 607 ~~SLRs~IGVVPQDtvLFNd-TI~yNIryak----~~---AsneevyaAAkAA~IHdrIl~fPegY~t~VG--ERGLkLS 676 (790)
T KOG0056|consen 607 QSSLRSSIGVVPQDTVLFND-TILYNIRYAK----PS---ASNEEVYAAAKAAQIHDRILQFPEGYNTRVG--ERGLKLS 676 (790)
T ss_pred HHHHHHhcCcccCcceeecc-eeeeheeecC----CC---CChHHHHHHHHHhhHHHHHhcCchhhhhhhh--hcccccC
Confidence 24579999999999865 8999997741 22 2334454444444 44455566665 3445699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 004932 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (723)
Q Consensus 250 GGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (723)
|||||||+|||+++.+|.+++|||.||+||..+.++|...|.++++..+| |++.|..+. + -.+|.|+++++|+|++.
T Consensus 677 GGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTt-IVvAHRLST-i-vnAD~ILvi~~G~IvEr 753 (790)
T KOG0056|consen 677 GGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTT-IVVAHRLST-I-VNADLILVISNGRIVER 753 (790)
T ss_pred CcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCce-EEEeeeehh-e-ecccEEEEEeCCeEeec
Confidence 99999999999999999999999999999999999999999999975444 455788764 3 35999999999999999
Q ss_pred eChhHHHH
Q 004932 330 GETLACLQ 337 (723)
Q Consensus 330 G~~~~~~~ 337 (723)
|.-+|++.
T Consensus 754 G~HeeLl~ 761 (790)
T KOG0056|consen 754 GRHEELLK 761 (790)
T ss_pred CcHHHHHh
Confidence 99888764
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=332.86 Aligned_cols=203 Identities=21% Similarity=0.306 Sum_probs=170.8
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (723)
..+.++||++.|. ++.+|+|+|+.+++||++||+||||||||||||+|+|+++|++ |+|.+++. ..
T Consensus 311 ~~l~~~~l~~~y~-----~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~---G~i~~~~~------~~ 376 (638)
T PRK10636 311 PLLKMEKVSAGYG-----DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVS---GEIGLAKG------IK 376 (638)
T ss_pred ceEEEEeeEEEeC-----CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEECCC------EE
Confidence 4689999999984 3569999999999999999999999999999999999998875 99999742 35
Q ss_pred EEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCCHHHHHHHHHHH
Q 004932 184 YGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIAR 260 (723)
Q Consensus 184 ~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (723)
+||++|+. .+.+..|+.+++.. .. + .....++.++++.+++. +..++.++ .|||||||||+||+
T Consensus 377 igy~~Q~~~~~l~~~~~~~~~~~~---~~-~---~~~~~~~~~~L~~~~l~~~~~~~~~~------~LSgGekqRl~La~ 443 (638)
T PRK10636 377 LGYFAQHQLEFLRADESPLQHLAR---LA-P---QELEQKLRDYLGGFGFQGDKVTEETR------RFSGGEKARLVLAL 443 (638)
T ss_pred EEEecCcchhhCCccchHHHHHHH---hC-c---hhhHHHHHHHHHHcCCChhHhcCchh------hCCHHHHHHHHHHH
Confidence 89999974 35566778777631 11 1 12345688999999996 46666554 99999999999999
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEE-EEeChhHHHH
Q 004932 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLACLQ 337 (723)
Q Consensus 261 aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~~~ 337 (723)
+|+.+|+||||||||+|||+.++..+.+.|+++ .| |||+++|+. ..+..+||+|++|++|+++ +.|+.++..+
T Consensus 444 ~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 444 IVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 999999999999999999999999999999997 34 899888876 5788999999999999997 8898887643
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=270.88 Aligned_cols=144 Identities=28% Similarity=0.392 Sum_probs=130.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (723)
++++|+++.+. +..+++++|+.+++||+++|+||||||||||+++|+|+.+|.. |+|.++|+ ..++
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~~~------~~i~ 66 (144)
T cd03221 1 IELENLSKTYG-----GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDE---GIVTWGST------VKIG 66 (144)
T ss_pred CEEEEEEEEEC-----CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCc---eEEEECCe------EEEE
Confidence 36889999884 2369999999999999999999999999999999999998874 99999985 4688
Q ss_pred EEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 004932 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (723)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~ 265 (723)
|++| ||+||+||++|||||+.+
T Consensus 67 ~~~~----------------------------------------------------------lS~G~~~rv~laral~~~ 88 (144)
T cd03221 67 YFEQ----------------------------------------------------------LSGGEKMRLALAKLLLEN 88 (144)
T ss_pred EEcc----------------------------------------------------------CCHHHHHHHHHHHHHhcC
Confidence 8887 899999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 004932 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (723)
Q Consensus 266 P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (723)
|++++|||||+|||+.++..+.+.|+++ +.|+++++|++ +++.++||++++|++||
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999987 46899988887 57888999999999986
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=330.80 Aligned_cols=204 Identities=22% Similarity=0.286 Sum_probs=169.8
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (723)
..+.++||++.|. ++.+|+|+|+.+.+|++++|+||||||||||||+|+|+++|+. |+|.+ |.+ -.
T Consensus 318 ~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~---G~i~~-~~~-----~~ 383 (635)
T PRK11147 318 IVFEMENVNYQID-----GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADS---GRIHC-GTK-----LE 383 (635)
T ss_pred ceEEEeeeEEEEC-----CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEE-CCC-----cE
Confidence 4689999999984 3569999999999999999999999999999999999998875 99998 432 25
Q ss_pred EEEEcCCC-ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 184 YGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 184 ~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
++|++|+. .+++.+||.|++.+.... .. .......+.++++.+++. +..++.++ .|||||||||+||++
T Consensus 384 i~y~~q~~~~l~~~~tv~e~l~~~~~~-~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~------~LSgGekqRl~la~a 454 (635)
T PRK11147 384 VAYFDQHRAELDPEKTVMDNLAEGKQE-VM--VNGRPRHVLGYLQDFLFHPKRAMTPVK------ALSGGERNRLLLARL 454 (635)
T ss_pred EEEEeCcccccCCCCCHHHHHHhhccc-cc--ccchHHHHHHHHHhcCCCHHHHhChhh------hCCHHHHHHHHHHHH
Confidence 89999975 688999999999764321 10 011234578899999995 56676554 999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe-CCeEEEE-eChhH
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS-NGNTLFF-GETLA 334 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~-~G~iv~~-G~~~~ 334 (723)
|+.+|++|||||||+|||+.++..+.+.|+++ +.|||+++|+. ..+..+||++++|+ +|+++.+ |+.++
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDR-QFVDNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCH-HHHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence 99999999999999999999999999999886 45889888876 57889999999998 8998654 55544
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=329.45 Aligned_cols=206 Identities=22% Similarity=0.333 Sum_probs=167.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (723)
..++++||++.|.+ .+.+|+|+|+.+++||+++|+||||||||||||+|+|+++|+. |+|.+++. ..
T Consensus 507 ~~L~~~~ls~~y~~----~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~---G~I~~~~~------~~ 573 (718)
T PLN03073 507 PIISFSDASFGYPG----GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSS---GTVFRSAK------VR 573 (718)
T ss_pred ceEEEEeeEEEeCC----CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---ceEEECCc------ee
Confidence 46899999999842 2469999999999999999999999999999999999999875 99998762 36
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004932 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
++|++|+. ...+++.++.........+. ..+++++++++.+|+.+ ..++. +..|||||||||+|||+|
T Consensus 574 igyv~Q~~--~~~l~~~~~~~~~~~~~~~~---~~~~~i~~~L~~~gl~~~~~~~~------~~~LSgGqkqRvaLAraL 642 (718)
T PLN03073 574 MAVFSQHH--VDGLDLSSNPLLYMMRCFPG---VPEQKLRAHLGSFGVTGNLALQP------MYTLSGGQKSRVAFAKIT 642 (718)
T ss_pred EEEEeccc--cccCCcchhHHHHHHHhcCC---CCHHHHHHHHHHCCCChHHhcCC------ccccCHHHHHHHHHHHHH
Confidence 99999975 34456666643221111111 12456889999999974 55554 459999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEE-EEeChhHHHH
Q 004932 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLACLQ 337 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~~~ 337 (723)
+.+|++|||||||+|||+.++..+++.|++. . .|||+++|++ ..+..+||++++|++|+++ +.|+.++..+
T Consensus 643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-gtvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-GGVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 9999999999999999999999998888765 3 4899988886 5788999999999999998 7787766443
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=279.18 Aligned_cols=219 Identities=21% Similarity=0.236 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEecc-------------------cccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCC
Q 004932 105 SVVWKDLTVTIKGK-------------------RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR 165 (723)
Q Consensus 105 ~l~~~~ls~~~~~~-------------------~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~ 165 (723)
.+.++||++.++.. +.....+|+||||++++||.+||+|+||||||||||+|+|.++|++
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~- 81 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS- 81 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCC-
Confidence 46778888777521 1123469999999999999999999999999999999999999985
Q ss_pred ceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCC
Q 004932 166 MYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245 (723)
Q Consensus 166 ~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~ 245 (723)
|+|.++|+-.... .-.-.+.|.+|.+||+.+-..+. .-...+.+++++++++..+|.++.|.++
T Consensus 82 --G~v~v~G~v~~li-------~lg~Gf~pelTGreNi~l~~~~~-G~~~~ei~~~~~eIieFaELG~fi~~Pv------ 145 (249)
T COG1134 82 --GKVKVTGKVAPLI-------ELGAGFDPELTGRENIYLRGLIL-GLTRKEIDEKVDEIIEFAELGDFIDQPV------ 145 (249)
T ss_pred --ceEEEcceEehhh-------hcccCCCcccchHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHHHHHhhCch------
Confidence 9999999742111 11223667899999998765432 1122346788999999999999998865
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 004932 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (723)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (723)
+.+|-||+-|++.|.|...+|+|||+||-.+-.|+.-+++-.+.++++.++++|+|+++|++ ..+.++|||+++|++|+
T Consensus 146 ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~-~~I~~~Cd~~i~l~~G~ 224 (249)
T COG1134 146 KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL-GAIKQYCDRAIWLEHGQ 224 (249)
T ss_pred hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhcCeeEEEeCCE
Confidence 49999999999999999999999999999999999999999999999988889999988887 58999999999999999
Q ss_pred EEEEeChhHHHHHhhh
Q 004932 326 TLFFGETLACLQHFSN 341 (723)
Q Consensus 326 iv~~G~~~~~~~~f~~ 341 (723)
+...|+++++.+++..
T Consensus 225 i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 225 IRMEGSPEEVIPAYEE 240 (249)
T ss_pred EEEcCCHHHHHHHHHH
Confidence 9999999999987654
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=277.70 Aligned_cols=215 Identities=20% Similarity=0.282 Sum_probs=176.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (723)
+.++|+.+.+..+....+++|+++|+++..|+++.|+|.||||||||+|+|+|.++|++ |+|.++|.++...
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~---G~I~Idg~dVtk~~~~~R 78 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS---GQILIDGVDVTKKSVAKR 78 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCC---ceEEECceecccCCHHHH
Confidence 34667777775555567889999999999999999999999999999999999999985 9999999986432
Q ss_pred CceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCC-c----cchHHHHHHHHHHHc--CCchHhhhhhcCCCCCCCCCHH
Q 004932 181 YGSYGFVERET--TLIGSLTVREYLYYSALLQLPG-F----FCQRKNVVEDAIHAM--SLSDYANKLIGGHCYMKGLPCG 251 (723)
Q Consensus 181 ~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~-~----~~~~~~~v~~~l~~l--gL~~~~~~~ig~~~~~~~LSGG 251 (723)
...++-|+|++ ...+.+|+.||+..+....... . ..++++...+-++.+ ||++..++.+| -||||
T Consensus 79 A~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig------lLSGG 152 (263)
T COG1101 79 ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG------LLSGG 152 (263)
T ss_pred hhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh------hccch
Confidence 12467788986 6789999999998876432111 1 112334445556655 55777887776 79999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 252 erqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
|||-++++.|-++.|+||+|||-|++|||.++..|++.=.++.+ .+.|.++++|+. .++.++-+|.++|++|+||.+-
T Consensus 153 QRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm-~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 153 QRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNM-EDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred HHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccH-HHHHhhCCeEEEEeCCeEEEEc
Confidence 99999999999999999999999999999999999999999874 577889988886 5788999999999999999874
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=330.98 Aligned_cols=199 Identities=18% Similarity=0.256 Sum_probs=163.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (723)
.++++||++.+++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++++ |+|.+++ ++.+
T Consensus 451 ~i~~~nv~~~~~~----~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~---G~i~~~~------~~~i 517 (659)
T TIGR00954 451 GIKFENIPLVTPN----GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYG---GRLTKPA------KGKL 517 (659)
T ss_pred eEEEEeeEEECCC----CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEeecC------CCcE
Confidence 5899999998742 3469999999999999999999999999999999999998865 9998864 3569
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC---CCCCCCCCHHHHHHHHHHHH
Q 004932 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG---HCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~---~~~~~~LSGGerqRv~IA~a 261 (723)
+||+|++.+++. |++||+.++............+++++++++.+++.+..++..|- .+....||||||||++||||
T Consensus 518 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARa 596 (659)
T TIGR00954 518 FYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARL 596 (659)
T ss_pred EEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHH
Confidence 999999988876 99999977532110000011345688999999998877663220 11346899999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (723)
|+.+|++|||||||+|||+.++..+.+.+++ .|+|+|+++|++. ..+.||++++|+
T Consensus 597 l~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~ 652 (659)
T TIGR00954 597 FYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMD 652 (659)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEe
Confidence 9999999999999999999999999998876 3889999999975 357899999996
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=277.40 Aligned_cols=154 Identities=23% Similarity=0.255 Sum_probs=133.7
Q ss_pred EeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEc
Q 004932 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVE 188 (723)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~ 188 (723)
.||++.|. ++.+++++ +.+++||+++|+||||||||||+|+|+|+++|++ |+|.++|.+ ++|++
T Consensus 4 ~~l~~~~~-----~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~-------i~~~~ 67 (177)
T cd03222 4 PDCVKRYG-----VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNG---DNDEWDGIT-------PVYKP 67 (177)
T ss_pred CCeEEEEC-----CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC---cEEEECCEE-------EEEEc
Confidence 57888773 35688885 8999999999999999999999999999999875 999999853 67777
Q ss_pred CCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 004932 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHV 268 (723)
Q Consensus 189 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~l 268 (723)
|+.. ||||||||++|||+|+.+|++
T Consensus 68 q~~~-------------------------------------------------------LSgGq~qrv~laral~~~p~l 92 (177)
T cd03222 68 QYID-------------------------------------------------------LSGGELQRVAIAAALLRNATF 92 (177)
T ss_pred ccCC-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 6431 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE--eChhH
Q 004932 269 LFIDEPLYHLDSVSALLMMVTLKKLASTG-CTLLFTINQSSTEVFGLFDRICLLSNGNTLFF--GETLA 334 (723)
Q Consensus 269 LlLDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~--G~~~~ 334 (723)
++|||||+|||+.++..+.+.|+++++++ .|+|+++|++ ..+.++||++++|+++-.++. |.|..
T Consensus 93 llLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 160 (177)
T cd03222 93 YLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPKG 160 (177)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCcc
Confidence 99999999999999999999999998765 8999988886 577889999999998766654 55543
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=277.40 Aligned_cols=157 Identities=19% Similarity=0.224 Sum_probs=130.7
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 004932 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (723)
..++|+|+|+++++||+++|+||||||||||||+|.+ . +|+|.++|.........++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~---~G~v~~~~~~~~~~~~~~~~~~q------------ 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----A---SGKARLISFLPKFSRNKLIFIDQ------------ 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----c---CCcEEECCcccccccccEEEEhH------------
Confidence 4568999999999999999999999999999999964 2 39999988643222234677765
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHcCCchH-hhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC--CcEEEEeCCCCCC
Q 004932 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMR--PHVLFIDEPLYHL 278 (723)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~--P~lLlLDEPTsgL 278 (723)
.++++.++|.+. .++ .++.||||||||++|||||+.+ |++|||||||+||
T Consensus 68 ---------------------~~~l~~~~L~~~~~~~------~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~L 120 (176)
T cd03238 68 ---------------------LQFLIDVGLGYLTLGQ------KLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGL 120 (176)
T ss_pred ---------------------HHHHHHcCCCccccCC------CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccC
Confidence 235677787643 444 4569999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004932 279 DSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 279 D~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
|+.++..+.+.|++++++|+|||+++|++. ++ +.||++++|.+|+.
T Consensus 121 D~~~~~~l~~~l~~~~~~g~tvIivSH~~~-~~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 121 HQQDINQLLEVIKGLIDLGNTVILIEHNLD-VL-SSADWIIDFGPGSG 166 (176)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEECCCCC
Confidence 999999999999999878999999999874 44 67999999966544
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=324.58 Aligned_cols=205 Identities=20% Similarity=0.325 Sum_probs=163.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (723)
+.++||++.|. ++.+|+||||.|.+|+++||+||||||||||||+|+|+++|++ |+|.++|. ..++
T Consensus 2 i~i~nls~~~g-----~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~---G~I~~~~~------~~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRG-----VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADG---GSYTFPGN------WQLA 67 (638)
T ss_pred EEEEEEEEEeC-----CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecCC------CEEE
Confidence 68999999994 4579999999999999999999999999999999999998875 99999874 2478
Q ss_pred EEcCCCccCCCCCHHHHHHHHH-----------------------Hhc--CCC-ccchHHHHHHHHHHHcCCc-hHhhhh
Q 004932 186 FVERETTLIGSLTVREYLYYSA-----------------------LLQ--LPG-FFCQRKNVVEDAIHAMSLS-DYANKL 238 (723)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~-----------------------~~~--~~~-~~~~~~~~v~~~l~~lgL~-~~~~~~ 238 (723)
|++|+.... ..|+.+.+.-.. .+. ... .....+.+++++++.+|+. +..++.
T Consensus 68 ~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 68 WVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred EEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 888864333 246555442110 000 000 0011345788999999996 566775
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEE
Q 004932 239 IGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 318 (723)
Q Consensus 239 ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v 318 (723)
++ .|||||||||+||++|+.+|+||||||||+|||+.+...+.+.|+++ +.|||+++|+. ..+.++||++
T Consensus 147 ~~------~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~-~~l~~~~d~i 216 (638)
T PRK10636 147 VS------DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDR-DFLDPIVDKI 216 (638)
T ss_pred hh------hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHHhcCEE
Confidence 54 99999999999999999999999999999999999999999998876 56899888876 5788999999
Q ss_pred EEEeCCeEE-EEeChhHH
Q 004932 319 CLLSNGNTL-FFGETLAC 335 (723)
Q Consensus 319 ~vL~~G~iv-~~G~~~~~ 335 (723)
++|++|+++ |.|+.+..
T Consensus 217 ~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 217 IHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred EEEeCCEEEEecCCHHHH
Confidence 999999996 56765543
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=354.01 Aligned_cols=209 Identities=24% Similarity=0.301 Sum_probs=174.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (723)
.++++|+++.++.+ .++++|+|+|+++++||.++|+||||||||||+++|+|.++|.+ |.+. ..++.+
T Consensus 614 ~I~~~~vsF~y~~~--~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~---G~i~-------~~~~~I 681 (1495)
T PLN03232 614 AISIKNGYFSWDSK--TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAE---TSSV-------VIRGSV 681 (1495)
T ss_pred cEEEEeeEEEcCCC--CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccC---CCEE-------EecCcE
Confidence 58999999999632 23579999999999999999999999999999999999999864 6553 123569
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHHHHHHHH
Q 004932 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERRRVRIA 259 (723)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerqRv~IA 259 (723)
+||+|++.++. .|++|||.|+. + ..+++.+++++..+|.+..+.+++|++ ....||||||||++||
T Consensus 682 ayv~Q~p~Lf~-gTIreNI~fg~----~----~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 752 (1495)
T PLN03232 682 AYVPQVSWIFN-ATVRENILFGS----D----FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMA 752 (1495)
T ss_pred EEEcCcccccc-ccHHHHhhcCC----c----cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHH
Confidence 99999999986 59999998752 1 135678889999999876666655443 2356999999999999
Q ss_pred HHHhhCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 260 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~-L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
||+.++|+|++||||||+||+.++.++++. ++.+ .+++|+|+++|++. ....||+|++|++|++++.|+.+++.+
T Consensus 753 RAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 753 RAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 999999999999999999999999988765 4443 36789999999974 467799999999999999999988763
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=353.05 Aligned_cols=208 Identities=24% Similarity=0.330 Sum_probs=176.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCce-eEEEECCEeCCCCCce
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY-GEVFVNGAKSEMPYGS 183 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~-G~I~i~G~~~~~~~~~ 183 (723)
.++++|+++.++.+ .++.+|+|+|+++++||.++|+||||||||||+++|+|.+++. + |+|.+. +.
T Consensus 614 ~I~~~nvsf~y~~~--~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~GG~I~l~--------~~ 680 (1622)
T PLN03130 614 AISIKNGYFSWDSK--AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPR---SDASVVIR--------GT 680 (1622)
T ss_pred ceEEEeeEEEccCC--CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccC---CCceEEEc--------Ce
Confidence 58999999999532 2356999999999999999999999999999999999999875 5 799864 35
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHHHHHHH
Q 004932 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERRRVRI 258 (723)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerqRv~I 258 (723)
++||+|++.++. .||+|||.|+. + ..+++.+++++..+|.+..+.+++|+. ....||||||||++|
T Consensus 681 Iayv~Q~p~Lfn-gTIreNI~fg~----~----~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaL 751 (1622)
T PLN03130 681 VAYVPQVSWIFN-ATVRDNILFGS----P----FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSM 751 (1622)
T ss_pred EEEEcCccccCC-CCHHHHHhCCC----c----ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHH
Confidence 999999999986 59999998752 1 135678899999999877666555443 235699999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
||||..+|+|+|||||||+||+.+++++.+ .++.+. +|+|+|+++|++. ....||+|++|++|++++.|+.+++.+
T Consensus 752 ARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 752 ARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred HHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 999999999999999999999999998865 555553 5899999999973 467799999999999999999988753
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=337.52 Aligned_cols=223 Identities=22% Similarity=0.338 Sum_probs=198.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (723)
..+..+++++.|..++ .+++++|+.|++||+.+++|+|||||||++|+|.|..+|++ |++.++|.+...
T Consensus 563 ~~~~~~~L~k~y~~~~----~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~---G~a~i~g~~i~~~~~~ 635 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKD----GAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTS---GEALIKGHDITVSTDF 635 (885)
T ss_pred ceEEEcceeeeecchh----hhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCc---ceEEEecCccccccch
Confidence 4688999999885321 29999999999999999999999999999999999999985 999999987532
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004932 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
.++.+||+||+|.+++.+|.+|+|.+.++++.-. ..+.++.++.+++.++|.+.+++.++ .+|||+|||++
T Consensus 636 ~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~-~~di~~~v~~ll~~~~L~~~~~~~~~------~ySgG~kRkLs 708 (885)
T KOG0059|consen 636 QQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLP-RSDIGSAIEKLLRLVGLGPYANKQVR------TYSGGNKRRLS 708 (885)
T ss_pred hhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCC-hhHHHHHHHHHHHHcCChhhhccchh------hCCCcchhhHH
Confidence 3457999999999999999999999998876311 12355669999999999999999765 89999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
+|.||+.+|++++|||||+|+||.+++.+.+.+++++++|+.+|+|+|.. +|...+|||+.+|.+|++...|+++++..
T Consensus 709 ~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q~LKs 787 (885)
T KOG0059|consen 709 FAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQELKS 787 (885)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHHhhhhheeecCeeEEecChHHHHh
Confidence 99999999999999999999999999999999999999888889877765 79999999999999999999999999987
Q ss_pred Hhhh
Q 004932 338 HFSN 341 (723)
Q Consensus 338 ~f~~ 341 (723)
.|..
T Consensus 788 rfG~ 791 (885)
T KOG0059|consen 788 RYGS 791 (885)
T ss_pred hcCC
Confidence 6644
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=321.09 Aligned_cols=206 Identities=20% Similarity=0.278 Sum_probs=161.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (723)
.++++||++.|. .+.+|+||||.+++|++++|+||||||||||||+|+|+++|++ |+|.++|. ..+
T Consensus 3 ~l~i~~ls~~~~-----~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~---G~I~~~~~------~~~ 68 (635)
T PRK11147 3 LISIHGAWLSFS-----DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDD---GRIIYEQD------LIV 68 (635)
T ss_pred EEEEeeEEEEeC-----CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---eEEEeCCC------CEE
Confidence 488999999994 3579999999999999999999999999999999999998875 99999873 135
Q ss_pred EEEcCCCccCCCCCHHHHHHHH------------------------------HHhc--CCC-ccchHHHHHHHHHHHcCC
Q 004932 185 GFVERETTLIGSLTVREYLYYS------------------------------ALLQ--LPG-FFCQRKNVVEDAIHAMSL 231 (723)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~------------------------------~~~~--~~~-~~~~~~~~v~~~l~~lgL 231 (723)
+|++|.+......+|.+++..+ ..+. +.. .....+.+++++++.+|+
T Consensus 69 ~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 148 (635)
T PRK11147 69 ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGL 148 (635)
T ss_pred EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCC
Confidence 6777754333334555543211 0000 000 001134568889999998
Q ss_pred chHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHH
Q 004932 232 SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEV 311 (723)
Q Consensus 232 ~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i 311 (723)
.. ++. +..|||||||||+||++|+.+|+||||||||+|||+.++..+.+.|+++. .|||+++|++ ..+
T Consensus 149 ~~--~~~------~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~-~~l 216 (635)
T PRK11147 149 DP--DAA------LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDR-SFI 216 (635)
T ss_pred CC--CCc------hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCH-HHH
Confidence 62 443 45999999999999999999999999999999999999999999999873 5888887776 578
Q ss_pred HhcCCEEEEEeCCeEE-EEeChhHHH
Q 004932 312 FGLFDRICLLSNGNTL-FFGETLACL 336 (723)
Q Consensus 312 ~~~~D~v~vL~~G~iv-~~G~~~~~~ 336 (723)
.++||+|++|++|+++ +.|+.++..
T Consensus 217 ~~~~d~i~~L~~G~i~~~~g~~~~~~ 242 (635)
T PRK11147 217 RNMATRIVDLDRGKLVSYPGNYDQYL 242 (635)
T ss_pred HHhcCeEEEEECCEEEEecCCHHHHH
Confidence 8999999999999997 457766543
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=264.24 Aligned_cols=216 Identities=24% Similarity=0.311 Sum_probs=170.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe---CC--
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK---SE-- 178 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~---~~-- 178 (723)
+.+.++++++.|. ..+-.+||||.+.|||+++|+|+|||||||||+||++++.|+. |+|.+.-.+ ..
T Consensus 5 PLL~V~~lsk~Yg-----~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~---G~v~Y~~r~~~~~dl~ 76 (258)
T COG4107 5 PLLSVSGLSKLYG-----PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDA---GTVTYRMRDGQPRDLY 76 (258)
T ss_pred cceeehhhhhhhC-----CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCC---CeEEEEcCCCCchhHh
Confidence 3578999999884 3457899999999999999999999999999999999999986 999986432 11
Q ss_pred ----C-----CCceEEEEcCCCc--cCCC----CCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC
Q 004932 179 ----M-----PYGSYGFVERETT--LIGS----LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC 243 (723)
Q Consensus 179 ----~-----~~~~~~yv~Q~~~--l~~~----lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~ 243 (723)
. .+...|+|.|++. +-.. -.+.|-++-... ....+.++...+++++++++... + ++
T Consensus 77 ~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~----RHYG~iR~~a~~WL~~VEI~~~R---i--DD 147 (258)
T COG4107 77 TMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA----RHYGNIRAEAQDWLEEVEIDLDR---I--DD 147 (258)
T ss_pred hhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhh----hhhhhHHHHHHHHHHhcccCccc---c--cC
Confidence 0 1124699999863 3222 233443321110 11223566678899999886332 1 45
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 004932 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLS 322 (723)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (723)
.|+.+|||++||+.|||-|++.|+++|+||||-|||...+..++++++.|. +-|..+++++|+. ..+.-++||.++|+
T Consensus 148 ~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl-~VarLla~rlmvmk 226 (258)
T COG4107 148 LPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLADRLMVMK 226 (258)
T ss_pred cccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh-HHHHHhhhcceeec
Confidence 788999999999999999999999999999999999999999999999998 4588888888875 45666899999999
Q ss_pred CCeEEEEeChhHHHH
Q 004932 323 NGNTLFFGETLACLQ 337 (723)
Q Consensus 323 ~G~iv~~G~~~~~~~ 337 (723)
+|++++.|-++.+++
T Consensus 227 ~g~vve~GLTDrvLD 241 (258)
T COG4107 227 QGQVVESGLTDRVLD 241 (258)
T ss_pred CCCEecccccccccc
Confidence 999999998887754
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=346.55 Aligned_cols=208 Identities=20% Similarity=0.254 Sum_probs=172.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (723)
.++++|+++.+.. ..+++|+|+|+.+++||+++|+||||||||||+++|+|.++|.. |+|.++| .+
T Consensus 636 ~i~~~~~~~~~~~---~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~---G~i~~~g--------~i 701 (1522)
T TIGR00957 636 SITVHNATFTWAR---DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE---GHVHMKG--------SV 701 (1522)
T ss_pred cEEEEEeEEEcCC---CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCC---cEEEECC--------EE
Confidence 5899999999852 13469999999999999999999999999999999999999875 9999987 48
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCC-----CCCCCCCHHHHHHHHHH
Q 004932 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERRRVRIA 259 (723)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerqRv~IA 259 (723)
+||+|++.++ +.||+||+.++.. . .+++.+++++..++.+..+....|+ +...+||||||||++||
T Consensus 702 ~yv~Q~~~l~-~~Ti~eNI~~g~~----~----~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLA 772 (1522)
T TIGR00957 702 AYVPQQAWIQ-NDSLRENILFGKA----L----NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLA 772 (1522)
T ss_pred EEEcCCcccc-CCcHHHHhhcCCc----c----CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHH
Confidence 9999999876 4799999987421 1 1234556666666655444433222 34678999999999999
Q ss_pred HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH--HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA--STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 260 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~--~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|||+.+|++++||||||+||+.++..+.+.+.+.. .+++|+|+++|++. .+ ..||+|++|++|++++.|+.+++.+
T Consensus 773 RAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~-~l-~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 773 RAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS-YL-PQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh-hh-hhCCEEEEecCCeEEeeCCHHHHHh
Confidence 99999999999999999999999999999997642 35789999999984 44 4599999999999999999988753
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=296.04 Aligned_cols=217 Identities=24% Similarity=0.322 Sum_probs=176.8
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 004932 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (723)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (723)
...+.|+++++.|. ..+++|+++|+.+.+|+.+|++||||+||||++++|-..+.+.+ |.|.++|+++..
T Consensus 260 ~g~v~F~~V~F~y~----~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~s---G~I~id~qdir~vtq 332 (497)
T COG5265 260 LGAVAFINVSFAYD----PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS---GSITIDGQDIRDVTQ 332 (497)
T ss_pred cceEEEEEEEeecc----ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcC---ceEEEcchhHHHhHH
Confidence 34689999999996 46789999999999999999999999999999999999999875 999999987532
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHH
Q 004932 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGE 252 (723)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGe 252 (723)
.++.+|.|||+..||.. |...|+.|+. +. ..++.+..+.+...+.+.....+.|.+ ..-.|||||
T Consensus 333 ~slR~aIg~VPQDtvLFND-ti~yni~ygr----~~---at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSgge 404 (497)
T COG5265 333 QSLRRAIGIVPQDTVLFND-TIAYNIKYGR----PD---ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGE 404 (497)
T ss_pred HHHHHHhCcCcccceehhh-hHHHHHhccC----cc---ccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCch
Confidence 24569999999999864 8999997642 11 233445555665555544444333222 223499999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004932 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
||||+|||+++.+|+||+|||.||+||..+.++|...|+++. .|+|.+++.|..+. + --+|+|+||++|+|++.|+-
T Consensus 405 kqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i-~~adeiivl~~g~i~erg~h 481 (497)
T COG5265 405 KQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-I-IDADEIIVLDNGRIVERGTH 481 (497)
T ss_pred HHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-c-cCCceEEEeeCCEEEecCcH
Confidence 999999999999999999999999999999999999999988 46677776888764 3 34999999999999999998
Q ss_pred hHHHH
Q 004932 333 LACLQ 337 (723)
Q Consensus 333 ~~~~~ 337 (723)
++++.
T Consensus 482 ~~ll~ 486 (497)
T COG5265 482 EELLA 486 (497)
T ss_pred HHHHH
Confidence 88765
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=256.41 Aligned_cols=191 Identities=23% Similarity=0.343 Sum_probs=163.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (723)
.++++||+... .+..+|-++|++|.+||++-||||||||||||+..+.|.+.+.-..+|++.+|++.... ..
T Consensus 2 ~l~l~nvsl~l-----~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~q 76 (213)
T COG4136 2 MLCLKNVSLRL-----PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76 (213)
T ss_pred ceeeeeeeecC-----CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhh
Confidence 46889998765 35679999999999999999999999999999999999998866678999999987543 35
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+++|..+|++.+||+++|.+||.|+.--.+.+. .+++.++.++++.||....++.+ ..||||||-||++-|+
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~--aRr~~a~aAL~~~gL~g~f~~dP------~tlSGGQrARvaL~R~ 148 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGN--ARRNAANAALERSGLDGAFHQDP------ATLSGGQRARVALLRA 148 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccH--HHHhhHHHHHHHhccchhhhcCh------hhcCcchHHHHHHHHH
Confidence 789999999999999999999988643222222 36677899999999999988754 4999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCCEEEEEEeCCh
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKK-LASTGCTLLFTINQSS 308 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~-l~~~g~tvi~t~h~~~ 308 (723)
|+..|+.++||||+|.||..-+.++.+.+-. ++..|..+|.++|+..
T Consensus 149 Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 149 LLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 9999999999999999999999999987654 4567888888788753
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=316.68 Aligned_cols=189 Identities=22% Similarity=0.247 Sum_probs=156.2
Q ss_pred eEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCC
Q 004932 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSE 178 (723)
Q Consensus 110 ~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~-----------i~G~~~~ 178 (723)
++++.|. .+..+|++++ .+++||++||+||||||||||||+|+|+++|+. |+|. ++|+++.
T Consensus 78 ~~~~~yg----~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~---G~i~~~~~~~~~~~~~~G~~l~ 149 (590)
T PRK13409 78 EPVHRYG----VNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNL---GDYEEEPSWDEVLKRFRGTELQ 149 (590)
T ss_pred CceEEec----CCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCC---ccccCCCcHHHHHHHhCChHHH
Confidence 3666663 1235999999 899999999999999999999999999999875 9997 8897642
Q ss_pred C-------CCceEEEEcCCCccCCC---CCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCC
Q 004932 179 M-------PYGSYGFVERETTLIGS---LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248 (723)
Q Consensus 179 ~-------~~~~~~yv~Q~~~l~~~---lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~L 248 (723)
. ....+++.+|.....|. .||+|++... +.+++++++++.++|.+..++.++ +|
T Consensus 150 ~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~----------~~~~~~~~~l~~l~l~~~~~~~~~------~L 213 (590)
T PRK13409 150 NYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV----------DERGKLDEVVERLGLENILDRDIS------EL 213 (590)
T ss_pred HHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhh----------hHHHHHHHHHHHcCCchhhcCChh------hC
Confidence 1 11235555554333332 3999998531 234568899999999988888665 99
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCC
Q 004932 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (723)
Q Consensus 249 SGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (723)
||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|+. .++..++|+|++|++|
T Consensus 214 SgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~-~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 214 SGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDL-AVLDYLADNVHIAYGE 287 (590)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999988 99999988887 5788999999999864
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=260.08 Aligned_cols=151 Identities=31% Similarity=0.508 Sum_probs=132.4
Q ss_pred EEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----Cc
Q 004932 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----YG 182 (723)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~-----~~ 182 (723)
++|+++.+. ++.+++++|+.+++||+++|+|+||||||||+++|+|++++.. |+|.++|.+.... .+
T Consensus 2 ~~~~~~~~~-----~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~---G~i~~~~~~~~~~~~~~~~~ 73 (157)
T cd00267 2 IENLSFRYG-----GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTS---GEILIDGKDIAKLPLEELRR 73 (157)
T ss_pred eEEEEEEeC-----CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCEEcccCCHHHHHh
Confidence 578888874 2369999999999999999999999999999999999998864 9999999764321 12
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004932 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
.++|++| |||||+||++||++|
T Consensus 74 ~i~~~~q----------------------------------------------------------lS~G~~~r~~l~~~l 95 (157)
T cd00267 74 RIGYVPQ----------------------------------------------------------LSGGQRQRVALARAL 95 (157)
T ss_pred ceEEEee----------------------------------------------------------CCHHHHHHHHHHHHH
Confidence 3555555 999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 004932 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (723)
+.+|++++|||||+|||..++..+.+.|+++.+.++|+++++|++ .++..+||++++|++|+
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 999999999999999999999999999999987788999988887 47778899999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-32 Score=262.80 Aligned_cols=186 Identities=24% Similarity=0.319 Sum_probs=160.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC----
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY---- 181 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~---- 181 (723)
++.+|++..- ....++.++||++.+||++-|.||||||||||||+|+|+..|++ |+|.++|.++....
T Consensus 3 L~a~~L~~~R-----~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~---G~v~~~~~~i~~~~~~~~ 74 (209)
T COG4133 3 LEAENLSCER-----GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDA---GEVYWQGEPIQNVRESYH 74 (209)
T ss_pred chhhhhhhcc-----CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCC---CeEEecCCCCccchhhHH
Confidence 4556666542 45689999999999999999999999999999999999999986 99999998754332
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.+-|+-.++.+=+.+||.|||.|--..... .....+.++++.+||....|..++ .||-||||||+|||-
T Consensus 75 ~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~----~~~~~i~~Al~~vgL~g~~dlp~~------~LSAGQqRRvAlArL 144 (209)
T COG4133 75 QALLYLGHQPGIKTELTALENLHFWQRFHGS----GNAATIWEALAQVGLAGLEDLPVG------QLSAGQQRRVALARL 144 (209)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHhCC----CchhhHHHHHHHcCcccccccchh------hcchhHHHHHHHHHH
Confidence 3466777888888999999999986544322 134568999999999999998776 999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChH
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 309 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~ 309 (723)
++..+++.|||||+++||......+-.++..-+.+|..||.++|||..
T Consensus 145 ~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 145 WLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 999999999999999999999999999999988899999999999974
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.98 E-value=8e-32 Score=339.98 Aligned_cols=203 Identities=22% Similarity=0.320 Sum_probs=165.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (723)
.++++|+++. .+.+|+|+|+.+++||+++|+|||||||||||++|+|+.+|.. |+|.++| .+
T Consensus 428 ~~~~~~~s~~-------~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~---G~i~~~g--------~i 489 (1490)
T TIGR01271 428 GLFFSNFSLY-------VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSE---GKIKHSG--------RI 489 (1490)
T ss_pred cccccccccc-------cCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECC--------EE
Confidence 3556666553 2469999999999999999999999999999999999999875 9999988 38
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCC-----CCCCCCCHHHHHHHHHH
Q 004932 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERRRVRIA 259 (723)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerqRv~IA 259 (723)
+||+|++.+++. ||+||+.|+... ..++.+++++..+|.+..+....|+ .....|||||||||+||
T Consensus 490 ayv~Q~~~l~~~-Ti~eNI~~g~~~--------~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lA 560 (1490)
T TIGR01271 490 SFSPQTSWIMPG-TIKDNIIFGLSY--------DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLA 560 (1490)
T ss_pred EEEeCCCccCCc-cHHHHHHhcccc--------chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHH
Confidence 999999999874 999999875311 1123445555556655444333222 24578999999999999
Q ss_pred HHHhhCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 260 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~-L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|||+.+|+++||||||+|||+.++..+.+. ++++. +|+|+|+++|++. .+ ..||+|++|++|++++.|+.+++.+
T Consensus 561 RAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~-~~-~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 561 RAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLE-HL-KKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChH-HH-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999985 66664 4899999999985 44 4699999999999999999988753
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=328.81 Aligned_cols=194 Identities=24% Similarity=0.339 Sum_probs=154.6
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 004932 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (723)
++.+|+|+|+.+++||+++|+|||||||||||++|+|+++|+. |+|.++ +.++|++|++.++ ..||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~---G~i~~~--------~~i~yv~Q~~~l~-~~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISE---GRVWAE--------RSIAYVPQQAWIM-NATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEEC--------CeEEEEeCCCccC-CCcHHH
Confidence 3569999999999999999999999999999999999998875 999864 3599999999877 479999
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 004932 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (723)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTs 276 (723)
|+.+.. + ...++.+++++..+|.+..+....| +.....|||||||||+|||||+.+|+++||||||+
T Consensus 740 nI~~~~----~----~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~s 811 (1560)
T PTZ00243 740 NILFFD----E----EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLS 811 (1560)
T ss_pred HHHcCC----h----hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccc
Confidence 998731 1 1122344455544444333222111 13456899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
+||+.++..+++.+.....+|+|+|+++|++. .+ ..||+|++|++|++++.|+.+++.+
T Consensus 812 aLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~-~~-~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 812 ALDAHVGERVVEECFLGALAGKTRVLATHQVH-VV-PRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred cCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999999988754332335899999999874 34 6799999999999999999988753
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=264.87 Aligned_cols=189 Identities=21% Similarity=0.213 Sum_probs=134.0
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHH-HHHHcCCCCCCCceeEEEEC-----------C--EeCC---CCCceE
Q 004932 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLL-RAIAGRLPHSARMYGEVFVN-----------G--AKSE---MPYGSY 184 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL-~~L~G~~~~~~~~~G~I~i~-----------G--~~~~---~~~~~~ 184 (723)
..++|+|||+++++||+++|+|+||||||||+ ..|.. .|++.+. | ...+ ......
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA--------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSP 78 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH--------HHHHHHhhcccchhhhhhcccCccccccccCCCc
Confidence 35699999999999999999999999999996 44431 1221110 0 0000 001122
Q ss_pred EEEcCCC--ccCCCCCHHH---HHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 185 GFVERET--TLIGSLTVRE---YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 185 ~yv~Q~~--~l~~~lTV~E---~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
.+..|++ .+.|..+|.. ...+...+. .. ....++ .+.++.++|.+ ..++ ++++|||||||||+|
T Consensus 79 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~--~~~~~~-~~~l~~~~l~~~~~~~------~~~~LSgG~~qrv~l 148 (226)
T cd03270 79 AIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-AR--VGIRER-LGFLVDVGLGYLTLSR------SAPTLSGGEAQRIRL 148 (226)
T ss_pred eEEecCCCCCCCCCccHHHHHHHHHHHHHHh-hh--hhHHHH-HHHHHHCCCCcccccC------ccCcCCHHHHHHHHH
Confidence 3333332 3345556543 222211111 11 112233 56899999975 3555 456999999999999
Q ss_pred HHHHhhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEe
Q 004932 259 ARELVMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFG 330 (723)
Q Consensus 259 A~aL~~~P--~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G 330 (723)
||+|+.+| ++|||||||+|||+.++..+.+.|++++++|.|+|+++|++. ++ ++||++++| ++|+|+++|
T Consensus 149 aral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 149 ATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 99999998 599999999999999999999999999888999999999984 45 689999999 999999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=306.34 Aligned_cols=215 Identities=18% Similarity=0.193 Sum_probs=149.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..+.++|++++|. .+.+|+|+|+++.+|+.+||+|+||||||||||+|+|+...+....|+|.+.++.....
T Consensus 176 ~~I~i~nls~~y~-----~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t 250 (718)
T PLN03073 176 KDIHMENFSISVG-----GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTT 250 (718)
T ss_pred eeEEEceEEEEeC-----CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCC
Confidence 4589999999994 34699999999999999999999999999999999996411001136665543321000
Q ss_pred ----------------CceEEEEcCCCccCCCCCHHHH-----------------HHHH-HHhcCCCccchHHHHHHHHH
Q 004932 181 ----------------YGSYGFVERETTLIGSLTVREY-----------------LYYS-ALLQLPGFFCQRKNVVEDAI 226 (723)
Q Consensus 181 ----------------~~~~~yv~Q~~~l~~~lTV~E~-----------------l~~~-~~~~~~~~~~~~~~~v~~~l 226 (723)
...+++++|++.+... ++.++ +... ..+.... ....++++.+++
T Consensus 251 ~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~~~r~~~~L 328 (718)
T PLN03073 251 ALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELID-AYTAEARAASIL 328 (718)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcC-cchHHHHHHHHH
Confidence 0012333332211100 00000 0000 0000000 011244567778
Q ss_pred HHcCCc-hHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEe
Q 004932 227 HAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 305 (723)
Q Consensus 227 ~~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h 305 (723)
+.+|+. +..++.+ ..|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|+|+++|
T Consensus 329 ~~lgl~~~~~~~~~------~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsH 399 (718)
T PLN03073 329 AGLSFTPEMQVKAT------KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSH 399 (718)
T ss_pred HHCCCChHHHhCch------hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEEC
Confidence 888885 4455544 499999999999999999999999999999999999999999999887 679999888
Q ss_pred CChHHHHhcCCEEEEEeCCeEE-EEeChhHH
Q 004932 306 QSSTEVFGLFDRICLLSNGNTL-FFGETLAC 335 (723)
Q Consensus 306 ~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~ 335 (723)
+. ..+.++||++++|++|+++ |.|+.++.
T Consensus 400 d~-~~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 400 AR-EFLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred CH-HHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 75 5788999999999999996 66765543
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=291.35 Aligned_cols=204 Identities=25% Similarity=0.331 Sum_probs=167.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (723)
.++++|+++.| +.+.+++|+|+.+.+|+.+||||+||||||||||+|+|...|+. |+|...+. ..+
T Consensus 3 ~i~~~~ls~~~-----g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~---G~i~~~~~------~~v 68 (530)
T COG0488 3 MITLENLSLAY-----GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDS---GEVTRPKG------LRV 68 (530)
T ss_pred eEEEeeeEEee-----CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCC---CeEeecCC------ceE
Confidence 58899999999 35689999999999999999999999999999999999998875 99987642 359
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHh--c-----------CCCc----------------cchHHHHHHHHHHHcCCchHh
Q 004932 185 GFVERETTLIGSLTVREYLYYSALL--Q-----------LPGF----------------FCQRKNVVEDAIHAMSLSDYA 235 (723)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~--~-----------~~~~----------------~~~~~~~v~~~l~~lgL~~~~ 235 (723)
+|++|+..+.+..||.+.+.-+..- . ++.. ....+.+++.++..+|+.+.
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~- 147 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE- 147 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-
Confidence 9999999999999999987554210 0 0000 00123567778888888766
Q ss_pred hhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcC
Q 004932 236 NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 315 (723)
Q Consensus 236 ~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~ 315 (723)
++.++ +||||||.||+||++|+.+|++|+|||||++||..+..-+.+.|++. .| |+|+++|+ ...+-+.|
T Consensus 148 ~~~~~------~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~V~ 217 (530)
T COG0488 148 DRPVS------SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDNVA 217 (530)
T ss_pred cCchh------hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHHHh
Confidence 66555 99999999999999999999999999999999999999999999865 45 88886665 57889999
Q ss_pred CEEEEEeCCeEEEE-eChh
Q 004932 316 DRICLLSNGNTLFF-GETL 333 (723)
Q Consensus 316 D~v~vL~~G~iv~~-G~~~ 333 (723)
++|+-++.|++..+ |.-+
T Consensus 218 t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 218 THILELDRGKLTPYKGNYS 236 (530)
T ss_pred hheEEecCCceeEecCCHH
Confidence 99999999987544 5443
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-30 Score=309.09 Aligned_cols=217 Identities=24% Similarity=0.339 Sum_probs=184.8
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 004932 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (723)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (723)
+..++++|+++.|.. +...+|||||++|+|||.+||+|..|||||||+++|-++..|.+ |+|.+||.++..
T Consensus 1136 ~G~I~f~~~~~RYrp---~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~---G~I~IDgvdI~~igL 1209 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRP---NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAE---GEILIDGVDISKIGL 1209 (1381)
T ss_pred CCeEEEEEeEEEeCC---CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccC---CeEEEcCeecccccH
Confidence 357999999999963 34679999999999999999999999999999999999998864 999999998642
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHH
Q 004932 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGE 252 (723)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGe 252 (723)
.+++++.+|||+.+|. -|||.||. | ...-.++.+.++||..+|.+...+.+++.+ -..++|-||
T Consensus 1210 ~dLRsrlsIIPQdPvLFs-GTvR~NLD-------P-f~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQ 1280 (1381)
T KOG0054|consen 1210 HDLRSRLSIIPQDPVLFS-GTVRFNLD-------P-FDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQ 1280 (1381)
T ss_pred HHHHhcCeeeCCCCceec-CccccccC-------c-ccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHH
Confidence 2467999999999996 49999983 1 111256779999999999887766554322 235699999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004932 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
||-+++||||+++.+||+|||+|++.|+.+-..|.+.||+-- .++||+.+.|.... +. -+|||+||++|+++++|+|
T Consensus 1281 RQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T-Vm-d~DrVlVld~G~v~EfdsP 1357 (1381)
T KOG0054|consen 1281 RQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT-VM-DSDRVLVLDAGRVVEFDSP 1357 (1381)
T ss_pred HHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch-hh-hcCeEEEeeCCeEeecCCh
Confidence 999999999999999999999999999999999999999854 47899998888753 43 3899999999999999999
Q ss_pred hHHHH
Q 004932 333 LACLQ 337 (723)
Q Consensus 333 ~~~~~ 337 (723)
.++++
T Consensus 1358 ~~Ll~ 1362 (1381)
T KOG0054|consen 1358 AELLS 1362 (1381)
T ss_pred HHHHh
Confidence 99875
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=305.35 Aligned_cols=210 Identities=23% Similarity=0.331 Sum_probs=181.8
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (723)
..++++|.+++.... ...+.|+|||+++++|+++||+|+-|||||+||.+|.|.++.. +|+|.++|.
T Consensus 517 ~~i~i~~~sfsW~~~--~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~gs-------- 583 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDSE--SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNGS-------- 583 (1381)
T ss_pred ceEEEeeeeEecCCC--CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcCe--------
Confidence 458899999987542 3445999999999999999999999999999999999999875 599999984
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHHHHHHH
Q 004932 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERRRVRI 258 (723)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGerqRv~I 258 (723)
++||+|++-++. .|||||+.|+.. -.+++-+++++...|++..+.++.|+. +...||||||||+++
T Consensus 584 iaYv~Q~pWI~n-gTvreNILFG~~--------~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsL 654 (1381)
T KOG0054|consen 584 VAYVPQQPWIQN-GTVRENILFGSP--------YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISL 654 (1381)
T ss_pred EEEeccccHhhC-CcHHHhhhcCcc--------ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHH
Confidence 899999999885 599999988531 146778899999999887777765553 445699999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|||+-++.+|.+||.|.|++|+.+..+|.+..-+..-+++|+|++|||. +....+|.|++|++|+|++.|+.+|+.+
T Consensus 655 ARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 655 ARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred HHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 9999999999999999999999999999887665555689999999975 5778899999999999999999999873
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=257.75 Aligned_cols=195 Identities=20% Similarity=0.262 Sum_probs=150.1
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHH-----cCC-----CCC--CCcee------EEEECCEeCCCCC---
Q 004932 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA-----GRL-----PHS--ARMYG------EVFVNGAKSEMPY--- 181 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~-----G~~-----~~~--~~~~G------~I~i~G~~~~~~~--- 181 (723)
..-|+||+..++.|++++|.|+||||||||++.+. ... .|. ..+.| -|.++..++....
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 35789999999999999999999999999998652 110 011 01112 3556554431100
Q ss_pred ------------------------c----eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch
Q 004932 182 ------------------------G----SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD 233 (723)
Q Consensus 182 ------------------------~----~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 233 (723)
+ .+.|..++......+||.|++.|...+. ..+++.++++.+||.+
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~-------~~~~~~~~L~~vgL~~ 160 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP-------KIARKLQTLCDVGLGY 160 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh-------hHHHHHHHHHHcCCch
Confidence 0 1345555656667899999998765431 2345678999999987
Q ss_pred -HhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChH
Q 004932 234 -YANKLIGGHCYMKGLPCGERRRVRIARELVMR---PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 309 (723)
Q Consensus 234 -~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~---P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~ 309 (723)
..++. +..||||||||+.||++|+.+ |++++|||||+|||+..+..+.+.|++++++|.|+|+++|++.
T Consensus 161 l~l~~~------~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~- 233 (261)
T cd03271 161 IKLGQP------ATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD- 233 (261)
T ss_pred hhhcCc------cccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-
Confidence 35553 459999999999999999996 7999999999999999999999999999988999999999874
Q ss_pred HHHhcCCEEEEE------eCCeEEEEeCh
Q 004932 310 EVFGLFDRICLL------SNGNTLFFGET 332 (723)
Q Consensus 310 ~i~~~~D~v~vL------~~G~iv~~G~~ 332 (723)
.+ +.||+++.| ++|++++.|++
T Consensus 234 ~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 VI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 44 579999999 89999999974
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-29 Score=239.37 Aligned_cols=132 Identities=35% Similarity=0.597 Sum_probs=117.5
Q ss_pred eeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CCceEEEEcCCCccCCCCCHH
Q 004932 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----PYGSYGFVERETTLIGSLTVR 200 (723)
Q Consensus 126 L~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~ 200 (723)
|+|||+.+++||+++|+|+||||||||+++|+|..++. +|+|.++|++... .++.++|++|++.+++.+||+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPD---SGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHES---EEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccc---ccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999999999999999999999999886 5999999998654 135699999999999999999
Q ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 004932 201 EYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (723)
Q Consensus 201 E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTs 276 (723)
|+ ..+++++++++.+++.+..++.++ .....|||||||||+||+||+.+|++|||||||+
T Consensus 78 ~~--------------~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 EN--------------ESDERIEEVLKKLGLEDLLDRKIG--QRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HH--------------HHHHHHHHHHHHTTHGGGTGSBGT--SCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cc--------------cccccccccccccccccccccccc--cccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 99 134568899999999988888774 3447999999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-29 Score=237.36 Aligned_cols=209 Identities=20% Similarity=0.257 Sum_probs=167.6
Q ss_pred eEEEEeEEEEEecc--cccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe--CC--
Q 004932 105 SVVWKDLTVTIKGK--RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK--SE-- 178 (723)
Q Consensus 105 ~l~~~~ls~~~~~~--~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~--~~-- 178 (723)
.+.++|+++++.-. ..-..++|+|||+.++.||++++=||||||||||||+|-|-+.|++ |+|.+.-.. +.
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~---G~I~v~H~g~~vdl~ 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDE---GQILVRHEGEWVDLV 80 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCC---ceEEEEeCcchhhhh
Confidence 57888998877422 2234579999999999999999999999999999999999999885 999985431 11
Q ss_pred ---------CCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCC
Q 004932 179 ---------MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249 (723)
Q Consensus 179 ---------~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LS 249 (723)
..++.+|||.|--...|..+..|.+..++.-+ .......+.++..++.++++.+..-.+ .|...|
T Consensus 81 ~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~-gv~~~~a~~~a~~Ll~rLnlperLW~L-----aPaTFS 154 (235)
T COG4778 81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR-GVPREVARAKAADLLTRLNLPERLWSL-----APATFS 154 (235)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCCHHHhcC-----CCcccC
Confidence 12346899999988889888888887665432 111223556788999999998766543 456999
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 004932 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (723)
Q Consensus 250 GGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (723)
|||+|||.|||.++.+-+||+|||||+.||..++..++++|++-+..|..+|=+-|+ .+.-...|||++-+..
T Consensus 155 GGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred CchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc-HHHHHHHhhheeeccc
Confidence 999999999999999999999999999999999999999999988889888875554 4444568999988753
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-27 Score=269.20 Aligned_cols=204 Identities=25% Similarity=0.319 Sum_probs=167.7
Q ss_pred CCceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 004932 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (723)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~ 181 (723)
....++++|+++.|.+ .+.+++++|+.+.+|+.+||+||||+|||||||+|+|...|. +|+|.+.-.
T Consensus 318 g~~vl~~~~~~~~y~~----~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~~------ 384 (530)
T COG0488 318 GKLVLEFENVSKGYDG----GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGET------ 384 (530)
T ss_pred CCeeEEEeccccccCC----CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCCc------
Confidence 3457899999999952 268999999999999999999999999999999999998876 499987531
Q ss_pred ceEEEEcCCC-ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCCHHHHHHHHHH
Q 004932 182 GSYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 182 ~~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (723)
-.+||..|+. .+.+..|+.|++.-.. +. ..+..+...|..+++. +...+.++ .||||||.||.+|
T Consensus 385 v~igyf~Q~~~~l~~~~t~~d~l~~~~----~~---~~e~~~r~~L~~f~F~~~~~~~~v~------~LSGGEk~Rl~La 451 (530)
T COG0488 385 VKIGYFDQHRDELDPDKTVLEELSEGF----PD---GDEQEVRAYLGRFGFTGEDQEKPVG------VLSGGEKARLLLA 451 (530)
T ss_pred eEEEEEEehhhhcCccCcHHHHHHhhC----cc---ccHHHHHHHHHHcCCChHHHhCchh------hcCHhHHHHHHHH
Confidence 3589999985 5557889999985321 11 1256788999999996 44555554 9999999999999
Q ss_pred HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE-eChhHHH
Q 004932 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF-GETLACL 336 (723)
Q Consensus 260 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~-G~~~~~~ 336 (723)
+.++.+|.+|||||||++||..+...+.+.|... ..|||+++|+. ..+.++|++++++.+ ++..+ |..++..
T Consensus 452 ~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr-~Fl~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 452 KLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDR-YFLDRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred HHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 9999999999999999999999999999999886 35788877775 689999999999998 55544 7655543
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-28 Score=243.63 Aligned_cols=165 Identities=19% Similarity=0.238 Sum_probs=129.6
Q ss_pred eceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC------CCceeEEEECCEeCCC--CCceEEEEcCCCccCCCCC
Q 004932 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS------ARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLT 198 (723)
Q Consensus 127 ~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~------~~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lT 198 (723)
+++++.+.+| +++|+||||||||||+++|+|+.++. ....|++.++|++... ..+.+++++|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6788899999 99999999999999999999997653 1123578777765322 235799999988765
Q ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHh----hCCcEEEEeCC
Q 004932 199 VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV----MRPHVLFIDEP 274 (723)
Q Consensus 199 V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~----~~P~lLlLDEP 274 (723)
|. . ...++++++++. .+..++ .+..||||||||++||++|+ .+|++++||||
T Consensus 89 ------~~----~-----~~~~~~~~~l~~---~~~~~~------~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP 144 (197)
T cd03278 89 ------YS----I-----ISQGDVSEIIEA---PGKKVQ------RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEV 144 (197)
T ss_pred ------ee----E-----EehhhHHHHHhC---CCcccc------chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 11 0 013456677766 334444 44599999999999999997 46699999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 004932 275 LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (723)
Q Consensus 275 TsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (723)
|+|||+..+..+.+.|+++++ +.|||+++|++. . .+.||+++.+..
T Consensus 145 ~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~-~-~~~~d~v~~~~~ 190 (197)
T cd03278 145 DAALDDANVERFARLLKEFSK-ETQFIVITHRKG-T-MEAADRLYGVTM 190 (197)
T ss_pred cccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH-H-HhhcceEEEEEe
Confidence 999999999999999999975 688999889874 4 468999999963
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-27 Score=261.57 Aligned_cols=211 Identities=22% Similarity=0.330 Sum_probs=174.1
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--
Q 004932 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-- 180 (723)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~-- 180 (723)
.+.++++|++.. ..++||||++++||+++|.|-=|||+|-|+++|.|..++. +|+|.++|++....
T Consensus 261 ~~~l~v~~l~~~---------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~---~G~i~l~G~~v~~~sp 328 (500)
T COG1129 261 EPVLEVRNLSGG---------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPAS---SGEILLDGKPVRIRSP 328 (500)
T ss_pred CcEEEEecCCCC---------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCC---CceEEECCEEccCCCH
Confidence 345778887642 2589999999999999999999999999999999977665 49999999975432
Q ss_pred ----CceEEEEcCC---CccCCCCCHHHHHHHHHHhcCC----CccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCC
Q 004932 181 ----YGSYGFVERE---TTLIGSLTVREYLYYSALLQLP----GFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGL 248 (723)
Q Consensus 181 ----~~~~~yv~Q~---~~l~~~lTV~E~l~~~~~~~~~----~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~L 248 (723)
...++||+.| +.++..++|+||+.++...+.. -...+.++.+++..+.+++. .-.+..+ ..|
T Consensus 329 ~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v------~~L 402 (500)
T COG1129 329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI------GTL 402 (500)
T ss_pred HHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh------hcC
Confidence 2368999986 5789999999999887322211 11122455688889999885 2333444 499
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 004932 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (723)
Q Consensus 249 SGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (723)
|||.+|+|.|||.|..+|++|||||||.|.|..++.+|.++|++|+++|++||+++... +|+..+||||+||++|+++.
T Consensus 403 SGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 403 SGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIVG 481 (500)
T ss_pred CchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999999999977765 69999999999999999987
Q ss_pred EeCh
Q 004932 329 FGET 332 (723)
Q Consensus 329 ~G~~ 332 (723)
.=+.
T Consensus 482 e~~~ 485 (500)
T COG1129 482 ELDR 485 (500)
T ss_pred Eecc
Confidence 5443
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-28 Score=229.92 Aligned_cols=207 Identities=25% Similarity=0.360 Sum_probs=172.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.+.++||...- -|-.+|+.+..||++-++|||||||||||-.++|+++.. |+|.++|++.+..
T Consensus 3 l~qln~v~~~t---------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~s----Gsi~~~G~~l~~~~~~e 69 (248)
T COG4138 3 LMQLNDVAEST---------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGS----GSIQFAGQPLEAWSATE 69 (248)
T ss_pred eeeeccccccc---------cccccccccccceEEEEECCCCccHHHHHHHHhCCCCCC----ceEEECCcchhHHhHhH
Confidence 35667766532 467789999999999999999999999999999998753 9999999986422
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHH
Q 004932 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (723)
.+.-+|..|+..-...|.|...|.. ..|. ......++++.+.++|.+...+.+. +|||||-|||-+|
T Consensus 70 LArhRAYLsQqq~p~f~mpV~~YL~L----~qP~--~~~a~~i~~i~~~L~l~DKL~Rs~~------qLSGGEWQRVRLA 137 (248)
T COG4138 70 LARHRAYLSQQQTPPFAMPVWHYLTL----HQPD--KTRTELLNDVAGALALDDKLGRSTN------QLSGGEWQRVRLA 137 (248)
T ss_pred HHHHHHHHhhccCCcchhhhhhhhhh----cCch--HHHHHHHHHHHhhhcccchhhhhhh------hcCcccceeeEEe
Confidence 2345788888766667889888853 3333 2355678889999999988877654 9999999999999
Q ss_pred HHHhh-----CC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004932 260 RELVM-----RP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 260 ~aL~~-----~P--~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
...+. || ++|++|||.++||...+..+-++|.+++..|.+||++.|+.. ...+.+|++.+|+.|++...|..
T Consensus 138 av~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLN-hTLrhA~~~wLL~rG~l~~~G~~ 216 (248)
T COG4138 138 AVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKRGKLLASGRR 216 (248)
T ss_pred EEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchh-hHHHHHHHHHHHhcCeEEeecch
Confidence 87765 44 699999999999999999999999999999999999888764 67788999999999999999999
Q ss_pred hHHHH
Q 004932 333 LACLQ 337 (723)
Q Consensus 333 ~~~~~ 337 (723)
+|++.
T Consensus 217 ~eVlt 221 (248)
T COG4138 217 EEVLT 221 (248)
T ss_pred hhhcC
Confidence 99863
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-27 Score=243.29 Aligned_cols=184 Identities=17% Similarity=0.196 Sum_probs=127.7
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC----------------CCCCC---Ccee--EEEECCEeCC--
Q 004932 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR----------------LPHSA---RMYG--EVFVNGAKSE-- 178 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~----------------~~~~~---~~~G--~I~i~G~~~~-- 178 (723)
++.++++++ |++++|+||||||||||+++|+++ +.++. ..++ +|.+++.+..
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~ 88 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFP 88 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccC
Confidence 346777776 789999999999999999999844 22221 0112 5555553211
Q ss_pred ---C---CCceEEEEcCCCccCC-CCCHHHHHHHHHHhcCCCccc---hHHHHHHHHHHHcCCchHhhhhhcCCCCCCCC
Q 004932 179 ---M---PYGSYGFVERETTLIG-SLTVREYLYYSALLQLPGFFC---QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248 (723)
Q Consensus 179 ---~---~~~~~~yv~Q~~~l~~-~lTV~E~l~~~~~~~~~~~~~---~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~L 248 (723)
. ..+.+++++|+..+++ ..|..|...+...+.+..... ....++. +.+++.+..+. .+..|
T Consensus 89 ~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~---~l~~l~~~~~~------~~~~l 159 (243)
T cd03272 89 IDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKIN---SLTNMKQDEQQ------EMQQL 159 (243)
T ss_pred CCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchH---Hhhhccccccc------ccccc
Confidence 0 1235788888887776 467777666554443322100 0112233 33444443433 44599
Q ss_pred CHHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 004932 249 PCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (723)
Q Consensus 249 SGGerqRv~IA~aL~~----~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (723)
|||||||++||++|+. +|+++++||||+|||+.++..+++.|+++++ ++++|+++|.+ ++.++||++++|.
T Consensus 160 S~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 160 SGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred CHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 9999999999999974 5899999999999999999999999999866 77777755553 5789999999995
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-26 Score=256.46 Aligned_cols=196 Identities=23% Similarity=0.336 Sum_probs=163.7
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (723)
..++++|+++.-+. ....|++.++.+++||.+.|.||||||||||+|+|+|+.|.++ |+|.+- ....
T Consensus 391 ~~i~~~nl~l~~p~----~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~---G~I~~P------~~~~ 457 (604)
T COG4178 391 HGITLENLSLRTPD----GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGS---GRISMP------ADSA 457 (604)
T ss_pred ceeEEeeeeEECCC----CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCC---CceecC------CCCc
Confidence 57999999998753 4589999999999999999999999999999999999998764 877643 1245
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccc-hHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004932 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFC-QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
+-|+||.+.+... |.+|.|.|+. ... -.++.+.++|.++||.++.++.-+.++.-+.||+||||||++||.|
T Consensus 458 ~lflpQ~PY~p~G-tLre~l~YP~------~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARil 530 (604)
T COG4178 458 LLFLPQRPYLPQG-TLREALCYPN------AAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLL 530 (604)
T ss_pred eEEecCCCCCCCc-cHHHHHhCCC------CCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHH
Confidence 7899999987655 9999998752 211 2567789999999999999887665667788999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 004932 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (723)
+++|++++|||.|++||+.++..+.++|++-. .+.|||-+.|.+. +..+.++.+-+.
T Consensus 531 L~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 531 LHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred HcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeec
Confidence 99999999999999999999999999998733 3678888888874 566667665553
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-27 Score=241.20 Aligned_cols=186 Identities=15% Similarity=0.168 Sum_probs=134.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-CCCce
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-MPYGS 183 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~-~~~~~ 183 (723)
.++++|.. .| ..+.+++++++ ++++|+||||||||||+++|.-. +|.+.. ...+.
T Consensus 5 ~l~l~nfk-~~-----~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~-------------~G~~~~~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SY-----AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV-------------FGFRASKMRQKK 60 (212)
T ss_pred EEEEECcc-cC-----CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH-------------hccCHHHhhhhh
Confidence 35666654 34 34568888887 89999999999999999999732 121111 11235
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhc------CCCccchH-HH--HHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHH
Q 004932 184 YGFVERETTLIGSLTVREYLYYSALLQ------LPGFFCQR-KN--VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (723)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~------~~~~~~~~-~~--~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (723)
+++++|+..+.+.+|++|++.+..... ..+...+. .. ..+++++.++|.+..++.+ ..||+||||
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~------~~lS~G~~~ 134 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI------SNLSGGEKT 134 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch------hhcCHHHHH
Confidence 788888888888888888765432211 00000000 10 1256667778877766654 489999999
Q ss_pred HHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 004932 255 RVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (723)
Q Consensus 255 Rv~IA~aL~~----~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (723)
|++||++++. +|+++++||||+|||+.++..+.+.|+++++ +.|+|+++|++ ++.++||++++|..
T Consensus 135 r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 135 LSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 9999999974 4799999999999999999999999999865 45666667875 67899999999963
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-26 Score=238.13 Aligned_cols=176 Identities=17% Similarity=0.126 Sum_probs=134.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE-eC-C------CCCceEEEEcCCC---------ccCCCCC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA-KS-E------MPYGSYGFVERET---------TLIGSLT 198 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~-~~-~------~~~~~~~yv~Q~~---------~l~~~lT 198 (723)
..+++|+||||||||||+++|++++.+.. .|++...|. +. . .....+++++|++ .+.|.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~--~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITN--LSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccc--cccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 55999999999999999999999987641 267777665 21 1 1223688899884 3567889
Q ss_pred HHHHHHHHHHhcCC-CccchHHHHHHHHHHHcCCc--------------------hHhhhhhcCCCCCCCCCHHHHHHHH
Q 004932 199 VREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLS--------------------DYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 199 V~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~--------------------~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
|.+++......+.. .......+++.++++.+|+. +.. +..+.+||||||||++
T Consensus 103 V~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~------~~~~~~lS~G~~qr~~ 176 (251)
T cd03273 103 VTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVW------KESLTELSGGQRSLVA 176 (251)
T ss_pred EEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhh------cccccccCHHHHHHHH
Confidence 99888553221110 00112456788999999986 222 2356799999999999
Q ss_pred HHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 004932 258 IARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (723)
Q Consensus 258 IA~aL~----~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (723)
||++|+ .+|+++++||||+|||+.++..+.+.|+++. +|.++|+++|.+ ++.+.||+++-+.
T Consensus 177 la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 177 LSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 999998 4789999999999999999999999999985 488999999984 6778899999875
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=235.77 Aligned_cols=219 Identities=22% Similarity=0.289 Sum_probs=179.9
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CC-C
Q 004932 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EM-P 180 (723)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~-~~-~ 180 (723)
...++++||++.-. .+...+++|||.+++||+++|.|-.|.|-+.|+.+|+|+.++.. |+|.++|++. .. .
T Consensus 255 ~~vL~V~~L~v~~~----~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~---G~I~l~G~~v~~~~~ 327 (501)
T COG3845 255 EVVLEVEDLSVKDR----RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPAS---GRILLNGKDVLGRLS 327 (501)
T ss_pred CeEEEEeeeEeecC----CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCC---ceEEECCEeccccCC
Confidence 45789999987643 23578999999999999999999999999999999999987753 9999999985 21 1
Q ss_pred -----CceEEEEcCCC---ccCCCCCHHHHHHHHHHhcCC----C--ccchHHHHHHHHHHHcCCchHhhhhhcCCCCCC
Q 004932 181 -----YGSYGFVERET---TLIGSLTVREYLYYSALLQLP----G--FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246 (723)
Q Consensus 181 -----~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~----~--~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 246 (723)
...++|||+|. .+.+.+|+.||+.+....+-| . ...+.++...+++++++....- .....+
T Consensus 328 ~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~-----~~~~a~ 402 (501)
T COG3845 328 PRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPS-----PDAPAR 402 (501)
T ss_pred HHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCC-----CCcchh
Confidence 23689999975 678899999999765432110 1 1122456678889998876221 123457
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004932 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 247 ~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
.||||++||+-+||+|..+|++|++.+||.|||..+...|.+.|.++++.|+.|++++. ..++++++||||.||.+|++
T Consensus 403 ~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~-dLDEil~lsDrIaVi~~Gri 481 (501)
T COG3845 403 SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISE-DLDEILELSDRIAVIYEGRI 481 (501)
T ss_pred hcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEeh-hHHHHHHhhheeeeeeCCce
Confidence 99999999999999999999999999999999999999999999999999999999655 45799999999999999999
Q ss_pred EEEeChhH
Q 004932 327 LFFGETLA 334 (723)
Q Consensus 327 v~~G~~~~ 334 (723)
+...++++
T Consensus 482 ~~~~~~~~ 489 (501)
T COG3845 482 VGIVPPEE 489 (501)
T ss_pred eccccccc
Confidence 98877765
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.6e-25 Score=223.62 Aligned_cols=190 Identities=16% Similarity=0.127 Sum_probs=129.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEe-CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE----eCCC
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYAL-PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA----KSEM 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~-~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~----~~~~ 179 (723)
.++++|+. .|.+ . ++|+|... +|++++|+||||||||||+++|++.+-.. ..+....+.. ....
T Consensus 5 ~i~l~nf~-~y~~-----~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~--~~~~~~~~~~~~~~~~~~ 73 (213)
T cd03279 5 KLELKNFG-PFRE-----E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGK--TPRYGRQENLRSVFAPGE 73 (213)
T ss_pred EEEEECCc-CcCC-----c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecC--ccccccchhHHHHhcCCC
Confidence 46777776 4421 1 45566543 58999999999999999999999643111 1132322210 0112
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHH-HHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVED-AIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
....+++++|++.... ++.... .. ..++..+. .++..++.+..++ .+..||||||||++|
T Consensus 74 ~~~~v~~~f~~~~~~~--~~~r~~---------gl--~~~~~~~~~~l~~g~l~~~l~~------~~~~lS~G~~~r~~l 134 (213)
T cd03279 74 DTAEVSFTFQLGGKKY--RVERSR---------GL--DYDQFTRIVLLPQGEFDRFLAR------PVSTLSGGETFLASL 134 (213)
T ss_pred ccEEEEEEEEECCeEE--EEEEec---------CC--CHHHHHHhhhhhhcchHHHhcC------CccccCHHHHHHHHH
Confidence 2346888888763211 111111 11 01111111 2344445555555 445999999999999
Q ss_pred HHHHhh----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 004932 259 ARELVM----------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (723)
Q Consensus 259 A~aL~~----------~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (723)
|++|+. +|+++||||||+|||+.++..+.+.|+++++++.|+|+++|++ ..+..++|++++|++|.
T Consensus 135 a~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~-~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 135 SLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVE-ELKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECch-HHHHhhCcEEEEEecCC
Confidence 999985 5789999999999999999999999999987799999999987 47788999999999875
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-24 Score=266.02 Aligned_cols=136 Identities=18% Similarity=0.215 Sum_probs=111.1
Q ss_pred cCCCCCHHHHHHHHHHhc--CCCccchHHHHHHHHHHHcCCchH-hhhhhcCCCCCCCCCHHHHHHHHHHHHHh---hCC
Q 004932 193 LIGSLTVREYLYYSALLQ--LPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELV---MRP 266 (723)
Q Consensus 193 l~~~lTV~E~l~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~~LSGGerqRv~IA~aL~---~~P 266 (723)
.+...||.|+|.+...-. ......+..+++ ++++.+||.+. .++.+ ..|||||||||+||++|+ .+|
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~------~tLSGGE~QRV~LAraL~~~~~~P 831 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL------SSLSGGEIQRLKLAYELLAPSKKP 831 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc------ccCCHHHHHHHHHHHHHhhcCCCC
Confidence 456789999997765421 111112234455 58899999876 56644 499999999999999998 699
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe------CCeEEEEeChhHHHH
Q 004932 267 HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS------NGNTLFFGETLACLQ 337 (723)
Q Consensus 267 ~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~------~G~iv~~G~~~~~~~ 337 (723)
++|||||||+|||+.++..+++.|++++++|.|||+++|++. .+ +.+|++++|. +|++++.|+++++..
T Consensus 832 ~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 832 TLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 999999999999999999999999999988999999888874 55 8999999996 799999999988753
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-24 Score=220.53 Aligned_cols=163 Identities=17% Similarity=0.209 Sum_probs=122.4
Q ss_pred eeEEeCCcEEEEECCCCCcHHHHHHHHH----cCCCCCCCceeEEEECCEeC--CCCCceEEEEcCCC-----ccCCCCC
Q 004932 130 NGYALPGTMTVIMGPAKSGKSTLLRAIA----GRLPHSARMYGEVFVNGAKS--EMPYGSYGFVERET-----TLIGSLT 198 (723)
Q Consensus 130 s~~v~~Ge~~aIlGpsGsGKSTLL~~L~----G~~~~~~~~~G~I~i~G~~~--~~~~~~~~yv~Q~~-----~l~~~lT 198 (723)
++.+.+| +++|+|||||||||||++|. |..+++. |.+..+.+.. ......+++++|++ .....+|
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~---~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNS---KGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCccc---ccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 4556677 99999999999999999995 8877653 5554111111 12234688888887 4445568
Q ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH------HHHHHHHhhCCcEEEEe
Q 004932 199 VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR------VRIARELVMRPHVLFID 272 (723)
Q Consensus 199 V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR------v~IA~aL~~~P~lLlLD 272 (723)
+.|++.+. + ...+++.+ ++ .++.||+||||| ++||++|+.+|+++++|
T Consensus 93 ~~~~~~~~-----~------~~~~~~~~---------~~------~~~~LS~G~~~~~~la~rlala~al~~~p~illlD 146 (204)
T cd03240 93 ILENVIFC-----H------QGESNWPL---------LD------MRGRCSGGEKVLASLIIRLALAETFGSNCGILALD 146 (204)
T ss_pred Hhhceeee-----c------hHHHHHHH---------hc------CccccCccHHHHHHHHHHHHHHHHhccCCCEEEEc
Confidence 88887542 0 11222222 33 445999999996 78999999999999999
Q ss_pred CCCCCCCHHHHH-HHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEe-CC
Q 004932 273 EPLYHLDSVSAL-LMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLS-NG 324 (723)
Q Consensus 273 EPTsgLD~~~~~-~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~-~G 324 (723)
|||++||+..+. .+.+.|++++++ |.++|+++|++. ....||+++.|. +|
T Consensus 147 EP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~~~ 199 (204)
T cd03240 147 EPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEKDG 199 (204)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEeeCC
Confidence 999999999999 999999999876 889999999864 446799999995 44
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.1e-24 Score=253.27 Aligned_cols=126 Identities=21% Similarity=0.263 Sum_probs=106.5
Q ss_pred CCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC---cEEEEe
Q 004932 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARELVMRP---HVLFID 272 (723)
Q Consensus 197 lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P---~lLlLD 272 (723)
+||.|++.|...+. ...+..+.++.+||.. ..++.+ ..||||||||+.||++|+.+| +++|||
T Consensus 792 ltv~E~l~~f~~~~-------~i~~~l~~L~~vgL~~l~l~~~~------~tLSgGEkQRl~LAraL~~~p~~~~llILD 858 (943)
T PRK00349 792 MTVEEALEFFEAIP-------KIARKLQTLVDVGLGYIKLGQPA------TTLSGGEAQRVKLAKELSKRSTGKTLYILD 858 (943)
T ss_pred CcHHHHHHHHHhch-------hhhHHHHHHHHCCCCcccccCCc------ccCCHHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 78888888754321 1123467899999976 355543 489999999999999999999 999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChhHHHH
Q 004932 273 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (723)
Q Consensus 273 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (723)
|||+|||+..+..+++.|+++.++|.|||+++|++. .+ ..+|+|+.| ++|++++.|+++++..
T Consensus 859 EPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 859 EPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 999999999999999999999988999999999874 44 579999999 7999999999988754
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-23 Score=246.27 Aligned_cols=125 Identities=19% Similarity=0.231 Sum_probs=102.5
Q ss_pred CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchH-hhhhhcCCCCCCCCCHHHHHHHHHHHHHhh---CCcEEEE
Q 004932 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVM---RPHVLFI 271 (723)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~~LSGGerqRv~IA~aL~~---~P~lLlL 271 (723)
.+||.|.+.|...+. ...+..++++.+||... .++. ...|||||+||+.||++|+. +|++++|
T Consensus 789 ~~tv~e~~~f~~~~~-------~i~~~l~~L~~~gL~~l~l~~~------~~tLSgGe~QRl~LA~aL~~~~~~p~llIL 855 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP-------SISRKLQTLCDVGLGYIKLGQP------ATTLSGGEAQRIKLAKELSKRSTGRTLYIL 855 (924)
T ss_pred CCcHHHHHHHHHhcc-------chhHHHHHHHHcCCCchhhcCc------cccCCHHHHHHHHHHHHHhhcCCCCCEEEE
Confidence 357777776654321 11234678889999753 4553 45999999999999999997 5999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChhHH
Q 004932 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLAC 335 (723)
Q Consensus 272 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~ 335 (723)
||||+|||+..+..+++.|+++.++|.|||+++|++. .+ ..||++++| ++|++++.|+++++
T Consensus 856 DEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 856 DEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 9999999999999999999999988999999988874 45 579999999 79999999998764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-24 Score=207.95 Aligned_cols=228 Identities=21% Similarity=0.216 Sum_probs=175.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCc-eeEEEECCEeC-C----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARM-YGEVFVNGAKS-E---- 178 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~-~G~I~i~G~~~-~---- 178 (723)
.+-++|++..+.... +..+++++||+++.+||+-+++|.||||||-..|+|+|..+..=.+ .-+..+++.+. +
T Consensus 3 LLDIrnL~IE~~Tsq-G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 3 LLDIRNLTIEFKTSQ-GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred cccccceEEEEecCC-CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 356788988886432 4667999999999999999999999999999999999987643111 13344555431 1
Q ss_pred CC----CceEEEEcCCC--ccCCCCCHHHHHHHHHHhc-CCCccc----hHHHHHHHHHHHcCCchHhhhhhcCCCCCCC
Q 004932 179 MP----YGSYGFVERET--TLIGSLTVREYLYYSALLQ-LPGFFC----QRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247 (723)
Q Consensus 179 ~~----~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~-~~~~~~----~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~ 247 (723)
.. .+.+++++|++ .+.|.-+|...|.-..-.. ..+... -++.+.-++|..+|+.+..|-.- .+|.+
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~---SYP~E 158 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR---SYPYE 158 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH---hCcch
Confidence 11 13578899986 4666666654442211000 011111 15667889999999998887653 48889
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004932 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 248 LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
|.-||-|+|.||.|++.+|++||.||||+.+|+.++.+|.++|.++.+ +|+||+++.|+. ..+.+.||++-||.-|+-
T Consensus 159 lTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl-~~is~W~d~i~VlYCGQ~ 237 (330)
T COG4170 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDL-QMISQWADKINVLYCGQT 237 (330)
T ss_pred hccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccH-HHHHHHhhheEEEEeccc
Confidence 999999999999999999999999999999999999999999999985 577788866654 689999999999999999
Q ss_pred EEEeChhHHHH
Q 004932 327 LFFGETLACLQ 337 (723)
Q Consensus 327 v~~G~~~~~~~ 337 (723)
++.++.+++++
T Consensus 238 ~ESa~~e~l~~ 248 (330)
T COG4170 238 VESAPSEELVT 248 (330)
T ss_pred ccccchhHHhc
Confidence 99999998875
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-24 Score=228.10 Aligned_cols=203 Identities=20% Similarity=0.249 Sum_probs=160.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++|+.+.|.. ..--+..||++++.||++-|+|.||||||||+++|.|+.+|++ |+|.+||+++...
T Consensus 322 ~lelrnvrfay~~----~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pqs---G~I~ldg~pV~~e~led 394 (546)
T COG4615 322 TLELRNVRFAYQD----NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQS---GEILLDGKPVSAEQLED 394 (546)
T ss_pred ceeeeeeeeccCc----ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCC---CceeECCccCCCCCHHH
Confidence 5899999999853 2245788999999999999999999999999999999999985 9999999986432
Q ss_pred Cc-eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHH
Q 004932 181 YG-SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 181 ~~-~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (723)
++ -++-|+-|-.+|+.+ +.... ....+.++..++++.|.+...-.-| .-.+-.||.|||||+++-
T Consensus 395 YR~LfSavFsDyhLF~~l-----------l~~e~--~as~q~i~~~LqrLel~~ktsl~d~-~fs~~kLStGQkKRlAll 460 (546)
T COG4615 395 YRKLFSAVFSDYHLFDQL-----------LGPEG--KASPQLIEKWLQRLELAHKTSLNDG-RFSNLKLSTGQKKRLALL 460 (546)
T ss_pred HHHHHHHHhhhHhhhHhh-----------hCCcc--CCChHHHHHHHHHHHHhhhhcccCC-cccccccccchHHHHHHH
Confidence 11 233444454555432 11111 1245678899999988765433222 334567999999999999
Q ss_pred HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK-LASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 260 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~-l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
.||+-+-+|+++||=-+--||.-++.+.+.+-- ++++|+||+.++|++ .-|..+||++.+.+|++++.-
T Consensus 461 ~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 461 LALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 999999999999999999999999999886665 567899999998886 468899999999999998764
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-23 Score=224.64 Aligned_cols=211 Identities=25% Similarity=0.287 Sum_probs=140.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC-ce
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY-GS 183 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~-~~ 183 (723)
.+.++++++++. +..+++|+++.+.+|+-++|+|+|||||||+|++|.|+..|....-+ +..-.+...... ..
T Consensus 75 dvk~~sls~s~~-----g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d-~y~ls~e~~ps~~~a 148 (614)
T KOG0927|consen 75 DVKIESLSLSFH-----GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHID-FYLLSREIEPSEKQA 148 (614)
T ss_pred cceeeeeeeccC-----CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccc-hhhhcccCCCchHHH
Confidence 478999999984 56899999999999999999999999999999999999887431111 211111111000 00
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHH-HhcC--CC----------------ccchHHHHHHHHHHHcCC-chHhhhhhcCCC
Q 004932 184 YGFVERETTLIGSLTVREYLYYSA-LLQL--PG----------------FFCQRKNVVEDAIHAMSL-SDYANKLIGGHC 243 (723)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~-~~~~--~~----------------~~~~~~~~v~~~l~~lgL-~~~~~~~ig~~~ 243 (723)
+-++.+ +.-..+.-+.+-+ .+.. .. .....+.++.+++..+|. .+..++.+
T Consensus 149 v~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~---- 219 (614)
T KOG0927|consen 149 VQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKV---- 219 (614)
T ss_pred HHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHh----
Confidence 000000 0000010010000 0000 00 001123455666666665 45666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 004932 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (723)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (723)
.+||||+|.|+++||+|..+|++|+|||||+|||..+..-+-+.|.+..+- ++|++ .|+.+.+-..|.+|+-|.+
T Consensus 220 --~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~--~lVi~-sh~QDfln~vCT~Ii~l~~ 294 (614)
T KOG0927|consen 220 --KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI--ILVIV-SHSQDFLNGVCTNIIHLDN 294 (614)
T ss_pred --hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc--eEEEE-ecchhhhhhHhhhhheecc
Confidence 499999999999999999999999999999999999999999988876421 45554 4455688899999999999
Q ss_pred CeEE-EEeChhHH
Q 004932 324 GNTL-FFGETLAC 335 (723)
Q Consensus 324 G~iv-~~G~~~~~ 335 (723)
++.+ |.|+.++.
T Consensus 295 kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 295 KKLIYYEGNYDQY 307 (614)
T ss_pred cceeeecCCHHHH
Confidence 9955 55665543
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-23 Score=226.26 Aligned_cols=203 Identities=21% Similarity=0.267 Sum_probs=157.1
Q ss_pred CCceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 004932 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (723)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~ 181 (723)
+.+.+.++|+++.|.+ +..++++++|-+.+++.+|++||||+|||||||++.|.+.|.. |.|.-.-.
T Consensus 386 p~pvi~~~nv~F~y~~----~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~---G~vs~~~H------ 452 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSD----NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTI---GMVSRHSH------ 452 (614)
T ss_pred CCCeEEEeccccCCCC----cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccc---cccccccc------
Confidence 4567899999998853 2269999999999999999999999999999999999999874 87754322
Q ss_pred ceEEEEcCC--CccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 182 GSYGFVERE--TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 182 ~~~~yv~Q~--~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
..+++..|+ +.+.-..++-|++.-. .+. ..+.+.+..++..+||.. ..+. .+++||+|||+||..
T Consensus 453 ~~~~~y~Qh~~e~ldl~~s~le~~~~~----~~~--~~~~e~~r~ilgrfgLtgd~q~~------p~~~LS~Gqr~rVlF 520 (614)
T KOG0927|consen 453 NKLPRYNQHLAEQLDLDKSSLEFMMPK----FPD--EKELEEMRSILGRFGLTGDAQVV------PMSQLSDGQRRRVLF 520 (614)
T ss_pred ccchhhhhhhHhhcCcchhHHHHHHHh----ccc--cchHHHHHHHHHHhCCCcccccc------chhhcccccchhHHH
Confidence 123333343 3444456777776421 111 135677889999999984 4444 345999999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE-EEEeChh
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT-LFFGETL 333 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i-v~~G~~~ 333 (723)
|+.++..|.+|+|||||+|||..+...+-+.|.+. ..+||+++|+- ..|.+++++|.+..+|.+ .+.|+..
T Consensus 521 a~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDf-rlI~qVaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 521 ARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDF-RLISQVAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred HHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechh-hHHHHHHHHhHhhccCceeecCccHH
Confidence 99999999999999999999999999988888776 34667767765 588999999999988765 4556543
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-22 Score=214.49 Aligned_cols=189 Identities=20% Similarity=0.259 Sum_probs=148.4
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (723)
..+.|.++++++. .--|.-=.+.+..||+++++||||-||||+.++|+|.++|++ |+ .. .-.
T Consensus 341 ~lv~y~~~~k~~g------~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPde---g~----~~-----~~~ 402 (591)
T COG1245 341 TLVEYPDLKKTYG------DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDE---GS----EE-----DLK 402 (591)
T ss_pred eeeecchheeecC------ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCC---CC----Cc-----cce
Confidence 3467777777663 234555567788899999999999999999999999999985 65 11 124
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 004932 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (723)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~ 263 (723)
++|-||--.--...||++.|.-....+.. ..-...++++-+.|++..++.+. +|||||.|||+||.+|.
T Consensus 403 vSyKPQyI~~~~~gtV~~~l~~~~~~~~~-----~s~~~~ei~~pl~l~~i~e~~v~------~LSGGELQRvaIaa~L~ 471 (591)
T COG1245 403 VSYKPQYISPDYDGTVEDLLRSAIRSAFG-----SSYFKTEIVKPLNLEDLLERPVD------ELSGGELQRVAIAAALS 471 (591)
T ss_pred EeecceeecCCCCCcHHHHHHHhhhhhcc-----cchhHHhhcCccchHHHHhcccc------cCCchhHHHHHHHHHhc
Confidence 77888865555678999988644322211 11234578888999999998775 99999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEe
Q 004932 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS 322 (723)
Q Consensus 264 ~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (723)
.++++.+||||++.||...+..+-+.|++..+ .++|.+++-|+. ..+--++||++|..
T Consensus 472 reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi-~~~dyvsDr~ivF~ 530 (591)
T COG1245 472 READLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI-YMIDYVSDRLIVFE 530 (591)
T ss_pred cccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecce-ehhhhhhceEEEEe
Confidence 99999999999999999999999999999985 467777766654 46667899988764
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-22 Score=203.76 Aligned_cols=168 Identities=20% Similarity=0.161 Sum_probs=117.2
Q ss_pred eeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe----C--CCCCceEEEEcCCCccCCCCCH
Q 004932 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK----S--EMPYGSYGFVERETTLIGSLTV 199 (723)
Q Consensus 126 L~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~----~--~~~~~~~~yv~Q~~~l~~~lTV 199 (723)
++++++.+.+| +.+|+||||||||||+.+|........ . ....|.. + ......+...+|+..+.+.
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~---~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~--- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKA---S-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN--- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCc---c-cccccccHHHHhhCCCCeEEEEEEEEcCCccCC---
Confidence 35566666677 889999999999999999985432211 0 0001210 0 1112346777776655441
Q ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH----hhCCcEEEEeCCC
Q 004932 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL----VMRPHVLFIDEPL 275 (723)
Q Consensus 200 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL----~~~P~lLlLDEPT 275 (723)
+. .....+.++++++. .+..++ .++.||+|||||++||++| +.+|++++|||||
T Consensus 84 ------------~~-~~~~~~~~~~~l~~---~~~~~~------~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~ 141 (198)
T cd03276 84 ------------PL-CVLSQDMARSFLTS---NKAAVR------DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFD 141 (198)
T ss_pred ------------cC-CHHHHHHHHHHhcc---ccccCC------cccccChhHHHHHHHHHHHHHhcccCCCEEEecCcc
Confidence 00 00123456677766 444444 4569999999999999999 5899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc--C-CEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 004932 276 YHLDSVSALLMMVTLKKLAST--G-CTLLFTINQSSTEVFGLFDRICLLSNGN 325 (723)
Q Consensus 276 sgLD~~~~~~i~~~L~~l~~~--g-~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (723)
+|||+..+..+.+.|+++.++ + .||++++|++ .++.++ |+|.+|..|+
T Consensus 142 ~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~-~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 142 VFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDI-SGLASS-DDVKVFRMKD 192 (198)
T ss_pred cccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc-cccccc-cceeEEEecC
Confidence 999999999999999998653 3 5788877776 466664 9999998764
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-22 Score=212.11 Aligned_cols=177 Identities=16% Similarity=0.156 Sum_probs=117.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-------C-CC--CCc--eEEEEcCCCcc-CCCCCHHHHH
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-------S-EM--PYG--SYGFVERETTL-IGSLTVREYL 203 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~-------~-~~--~~~--~~~yv~Q~~~l-~~~lTV~E~l 203 (723)
.+++|+|||||||||||++|++.+.+.. |++..++.. . .. ... .+.|..|++.. .-..++.+..
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~---~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~ 99 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKS---SHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGS 99 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCc---ccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCc
Confidence 3999999999999999999999876532 555443211 0 00 011 23444443221 1011111110
Q ss_pred HHHHHhcCCCccchHHHHHHHHHHHcCCchHhh----------hhhc------CCCCCCCCCHHHHHHHHHHHHHhhC--
Q 004932 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYAN----------KLIG------GHCYMKGLPCGERRRVRIARELVMR-- 265 (723)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~----------~~ig------~~~~~~~LSGGerqRv~IA~aL~~~-- 265 (723)
. ..+.... ....+.++++++.+|+..... .... .+..+..||||||||++||++++.+
T Consensus 100 ~---~~~ingk-~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~ 175 (247)
T cd03275 100 S---SYRINGK-VVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSY 175 (247)
T ss_pred e---EEEECCE-EecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhcc
Confidence 0 0011111 113445678888899853211 1110 0112368999999999999999975
Q ss_pred --CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 004932 266 --PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (723)
Q Consensus 266 --P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (723)
|+++||||||+|||+..+..+.+.|++++++|.++|+++|++ ++.+.||++++|.
T Consensus 176 ~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~ 232 (247)
T cd03275 176 QPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVY 232 (247)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEE
Confidence 899999999999999999999999999987799999999984 5678999999996
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=215.39 Aligned_cols=204 Identities=16% Similarity=0.233 Sum_probs=163.0
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (723)
..+++++|++.-+. .+..+++|+|++|..|+-+.|.||||||||+|+|+|+|+.|..+ |.+..-.+. ..+.
T Consensus 432 n~i~~e~v~l~tPt---~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~---G~l~k~~~~---~~~~ 502 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPT---NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTG---GKLTKPTDG---GPKD 502 (659)
T ss_pred ceEEeeeeeecCCC---CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCC---CeEEecccC---CCCc
Confidence 46899999987653 14578899999999999999999999999999999999998664 888754432 1145
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC------CCCCCCHHHHHHHH
Q 004932 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC------YMKGLPCGERRRVR 257 (723)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~------~~~~LSGGerqRv~ 257 (723)
+-|+||.|.+.- -|.||.+.|+..--.+......++++.+.|+.++|.|..++.-| -+ +...||+||+||++
T Consensus 503 lfflPQrPYmt~-GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~gg-ld~~~~~dW~dvLS~GEqQRLa 580 (659)
T KOG0060|consen 503 LFFLPQRPYMTL-GTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGG-LDQQVDWDWMDVLSPGEQQRLA 580 (659)
T ss_pred eEEecCCCCccc-cchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCC-CCchhhccHHhhcCHHHHHHHH
Confidence 889999997654 49999998874221111112356789999999999999887543 32 34569999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (723)
.||-+.++|++-||||-||++|......+.+.+++ .|.|.|-+.|..+ +.++-|.++-|+.
T Consensus 581 ~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 581 FARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHH--HHhhhhEEEEecC
Confidence 99999999999999999999999999998888776 5888888777764 5677788888874
|
|
| >PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.3e-23 Score=206.36 Aligned_cols=208 Identities=24% Similarity=0.367 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHHHhChHHH-HHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHhhH
Q 004932 433 TRVAVLTWRSLLIMSREWKYY-WLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIAGV-PALMKEI 510 (723)
Q Consensus 433 ~Q~~~l~~R~~~~~~Rd~~~~-~~r~~~~i~~al~~G~~f~~l~~~~~~i~~r~g~lff~~~~~~~~~~~~~-~~~~~er 510 (723)
+|++.+++|+++..+|||.+. ..+++..++.++++|.+|.+++++.+++ ++.|.+++.+....+...... .....|+
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 8999999999999999999999555555 788888888887775555444 7788899
Q ss_pred HHHHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004932 511 KTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKD 590 (723)
Q Consensus 511 ~v~~rE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y~m~Gl~~~~~~F~~f~l~~~~~~~~~~s~~~~i~~~~~~ 590 (723)
..+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ +|+.+++.+++..+++.++|.+++.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999999988 77888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHh
Q 004932 591 VYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEY 645 (723)
Q Consensus 591 ~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~w~~yiSp~~Ya~~al~~nef 645 (723)
...+..+.+.+..++++++|.+.|.+.+|+ |..|+.|+||++|++|++..++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~--~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 158 FRDASAISSLILLLLFFLSGVFFPLSSLPS--WLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhcccccccceeeecchHHChH--HHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999984 55679999999999999999886
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane |
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-20 Score=181.55 Aligned_cols=211 Identities=20% Similarity=0.266 Sum_probs=159.8
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 004932 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (723)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (723)
...+++.++.++|+ ...+++-|+|+.++.|.-..++|.||||||||||+|+|-.-... |.|.++|.+.-.
T Consensus 11 ~~aievsgl~f~y~----~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~---~~v~VlgrsaFhDt~ 83 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYK----VSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGG---GVVQVLGRSAFHDTS 83 (291)
T ss_pred cceEEEeccEEecc----cCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccC---CeEEEcCcCcccccc
Confidence 34689999999996 34589999999999999999999999999999999999765543 899999975311
Q ss_pred --CCceEEEEcC----------CCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCC
Q 004932 180 --PYGSYGFVER----------ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247 (723)
Q Consensus 180 --~~~~~~yv~Q----------~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~ 247 (723)
......|..- +-.+-..+++.+.| |+. .+. .-++-+++++.+.+.- ..+++.
T Consensus 84 l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mi-fgV----~g~---dp~Rre~LI~iLDIdl--------~WRmHk 147 (291)
T KOG2355|consen 84 LESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGV----GGD---DPERREKLIDILDIDL--------RWRMHK 147 (291)
T ss_pred ccccCceeEecccccccccccccccccccccHHHHH-hhc----cCC---ChhHhhhhhhheeccc--------eEEEee
Confidence 0112333322 22233355665544 221 121 1234456666665531 235678
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004932 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 248 LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
+|-|||+||.|++-|++.=++|+|||-|--||..++..+++.+++-.+ +|.|||..+|-- +-+.....+++.|++|++
T Consensus 148 vSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF-DGLe~Wpthl~yi~~Gkl 226 (291)
T KOG2355|consen 148 VSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF-DGLETWPTHLVYIKSGKL 226 (291)
T ss_pred ccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec-cchhhcchhEEEecCCee
Confidence 999999999999999999999999999999999999999999999885 689999988875 467788999999999999
Q ss_pred EEEeChhHHHH
Q 004932 327 LFFGETLACLQ 337 (723)
Q Consensus 327 v~~G~~~~~~~ 337 (723)
+-.-+.+++.+
T Consensus 227 ~~~l~~~~i~e 237 (291)
T KOG2355|consen 227 VDNLKYQKIKE 237 (291)
T ss_pred eeccccchhhh
Confidence 97555544443
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-20 Score=188.54 Aligned_cols=146 Identities=17% Similarity=0.147 Sum_probs=108.5
Q ss_pred eeceeeEEeCCc-EEEEECCCCCcHHHHHHHHH--------cCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCC
Q 004932 126 VKSSNGYALPGT-MTVIMGPAKSGKSTLLRAIA--------GRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGS 196 (723)
Q Consensus 126 L~~vs~~v~~Ge-~~aIlGpsGsGKSTLL~~L~--------G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~ 196 (723)
..++|+++.+|+ +++|+||||||||||||+|+ |..-|.. .. ..++|..|...
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~---~~------------~~~~~~~~~~~---- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAA---EG------------SSLPVFENIFA---- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccc---cc------------ccCcCccEEEE----
Confidence 446788888994 89999999999999999998 4322210 00 01222222211
Q ss_pred CCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 004932 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (723)
Q Consensus 197 lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTs 276 (723)
.++..+..+. ....+|+||||++.|+++ +.+|+++++|||++
T Consensus 78 -------------------------------~lg~~~~l~~------~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~ 119 (200)
T cd03280 78 -------------------------------DIGDEQSIEQ------SLSTFSSHMKNIARILQH-ADPDSLVLLDELGS 119 (200)
T ss_pred -------------------------------ecCchhhhhc------CcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCC
Confidence 1112222222 234899999999999988 48999999999999
Q ss_pred CCCHHHHHHHH-HHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 277 HLDSVSALLMM-VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 277 gLD~~~~~~i~-~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
|||+.....+. ..++.+.+.|.++|+++|+ .++.++||++++|++|++++.+
T Consensus 120 glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~--~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 120 GTDPVEGAALAIAILEELLERGALVIATTHY--GELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEECCH--HHHHHHHhcCCCeEEEEEEEec
Confidence 99999999996 4788888778999998887 3678999999999999998874
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-20 Score=205.07 Aligned_cols=203 Identities=22% Similarity=0.227 Sum_probs=139.1
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 004932 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (723)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (723)
+..+...++++.|. .+.+|++-++++..|.-.+|+|+||+|||||||+|+. |.|..-..+.+.
T Consensus 78 ~~Di~~~~fdLa~G-----~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v~~f~veqE~--- 140 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYG-----GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQVSGFHVEQEV--- 140 (582)
T ss_pred ccceeeeeeeeeec-----chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCcCccCchhhe---
Confidence 34688899999984 5789999999999999999999999999999999986 222222211100
Q ss_pred eEEEEcCC-CccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 183 SYGFVERE-TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 183 ~~~yv~Q~-~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
.-.+++-. +.+....++.+.+.-...+. .. ....+...++|..+|..+..... ..+.||||-|-|+++|||
T Consensus 141 ~g~~t~~~~~~l~~D~~~~dfl~~e~~l~--~~-~~l~ei~~~~L~glGFt~emq~~-----pt~slSGGWrMrlaLARA 212 (582)
T KOG0062|consen 141 RGDDTEALQSVLESDTERLDFLAEEKELL--AG-LTLEEIYDKILAGLGFTPEMQLQ-----PTKSLSGGWRMRLALARA 212 (582)
T ss_pred eccchHHHhhhhhccHHHHHHHHhhhhhh--cc-chHHHHHHHHHHhCCCCHHHHhc-----cccccCcchhhHHHHHHH
Confidence 01122221 12222223333222111110 00 01233344488899987554432 345999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE-EEEeChhH
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT-LFFGETLA 334 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i-v~~G~~~~ 334 (723)
|..+|+||+|||||+.||..+..-+.+.|+.+. .|+|+++|+ +..+-+.|..|+-+++-|+ .|-|+-++
T Consensus 213 lf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~---~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~ 282 (582)
T KOG0062|consen 213 LFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK---ITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQ 282 (582)
T ss_pred HhcCCCEEeecCCcccchhHHHHHHHHHHhhCC---ceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHH
Confidence 999999999999999999999999998888764 688876665 5677788888888877665 34455444
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.9e-20 Score=199.88 Aligned_cols=200 Identities=19% Similarity=0.221 Sum_probs=155.8
Q ss_pred CCceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 004932 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (723)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~ 181 (723)
.++.+++.+|++.|.... -+++.+++..++.-.-.+++|+||+||||++|++.|-+.|.. |-+.+++ +
T Consensus 359 ~~p~l~i~~V~f~y~p~~---y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~r---gi~~~~~------r 426 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSE---YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTR---GIVGRHP------R 426 (582)
T ss_pred CCCeeEEEeeeccCCCcc---hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCccc---ceeeecc------c
Confidence 345789999998885321 179999999999999999999999999999999999887754 7776654 3
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCCHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIAR 260 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (723)
.+++|-.|...=+-.+.|-+.-... .. .|+. .++.+++-+..+||+ +.+... +.+||||||-||++|.
T Consensus 427 ~ri~~f~Qhhvd~l~~~v~~vd~~~-~~-~pG~---~~ee~r~hl~~~Gl~g~la~~s------i~~LSGGQKsrvafA~ 495 (582)
T KOG0062|consen 427 LRIKYFAQHHVDFLDKNVNAVDFME-KS-FPGK---TEEEIRRHLGSFGLSGELALQS------IASLSGGQKSRVAFAA 495 (582)
T ss_pred ceecchhHhhhhHHHHHhHHHHHHH-Hh-CCCC---CHHHHHHHHHhcCCCchhhhcc------ccccCCcchhHHHHHH
Confidence 4688888875433334444332221 11 2332 456688899999996 455443 4589999999999999
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 004932 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (723)
Q Consensus 261 aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (723)
....+|.+|+|||||+.||..+-..+.+.|+... | .||+++|+- +.+..+|+.+.+.++|++.-
T Consensus 496 ~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--G-GVv~VSHd~-~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 496 CTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN--G-GVVLVSHDE-EFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred HhcCCCcEEEecCCCccccHHHHHHHHHHHHhcC--C-cEEEEECcH-HHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999999999999999888873 3 566656764 68899999999999999864
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.7e-20 Score=195.76 Aligned_cols=192 Identities=23% Similarity=0.310 Sum_probs=148.0
Q ss_pred CCceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 004932 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (723)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~ 181 (723)
.++.+-+.||++.|+ +.++++++++|-|.-...+||+||||.||||||++|.|-+.|.. |+..-|- +
T Consensus 583 ~PPvLGlH~VtFgy~----gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~---GE~RKnh------r 649 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP----GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPND---GELRKNH------R 649 (807)
T ss_pred CCCeeecccccccCC----CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCc---chhhccc------e
Confidence 345688999999996 35689999999999999999999999999999999999999874 7665332 2
Q ss_pred ceEEEEcCCC--ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHH
Q 004932 182 GSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 182 ~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (723)
-++|+..|+. .|...-|.-|.|.-. ..+| .+..+..|-.+||...+++. .+..||||||-||++|
T Consensus 650 L~iG~FdQh~~E~L~~Eetp~EyLqr~--FNlp------yq~ARK~LG~fGL~sHAHTi-----kikdLSGGQKaRVala 716 (807)
T KOG0066|consen 650 LRIGWFDQHANEALNGEETPVEYLQRK--FNLP------YQEARKQLGTFGLASHAHTI-----KIKDLSGGQKARVALA 716 (807)
T ss_pred eeeechhhhhHHhhccccCHHHHHHHh--cCCC------hHHHHHHhhhhhhhhccceE-----eeeecCCcchHHHHHH
Confidence 3588887763 555566777776422 2222 23456788899998777763 4579999999999999
Q ss_pred HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 004932 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (723)
Q Consensus 260 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (723)
.--+..|+||||||||++||..+...+.+.|++.. | .||+++|+-. .+.+.--.++|+.+
T Consensus 717 eLal~~PDvlILDEPTNNLDIESIDALaEAIney~--G-gVi~VsHDeR-Li~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 717 ELALGGPDVLILDEPTNNLDIESIDALAEAINEYN--G-GVIMVSHDER-LIVETDCNLWVVEN 776 (807)
T ss_pred HHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc--C-cEEEEecccc-eeeecCceEEEEcc
Confidence 99999999999999999999999999999888863 3 5666677753 34444345555544
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.3e-20 Score=186.89 Aligned_cols=81 Identities=16% Similarity=0.129 Sum_probs=68.6
Q ss_pred CCCCCCHHHHHHHHHHHHH----hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C-CEEEEEEeCChHHHHhcCC-
Q 004932 244 YMKGLPCGERRRVRIAREL----VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-G-CTLLFTINQSSTEVFGLFD- 316 (723)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL----~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g-~tvi~t~h~~~~~i~~~~D- 316 (723)
.+.+||||||||+.++++| +.+|+++++||||+|||+.++..+++.|++++++ | .++|+++|+.. ++.+.+|
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccCc
Confidence 4569999999999877654 4799999999999999999999999999999876 5 57888888864 4566666
Q ss_pred -EEEEEeCCe
Q 004932 317 -RICLLSNGN 325 (723)
Q Consensus 317 -~v~vL~~G~ 325 (723)
+|++|++|+
T Consensus 202 ~~v~~l~~g~ 211 (213)
T cd03277 202 MTVLCVYNGP 211 (213)
T ss_pred eEEEEEecCc
Confidence 788889887
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-19 Score=195.07 Aligned_cols=169 Identities=24% Similarity=0.301 Sum_probs=127.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCC-------CCCceEEEEcCC----C
Q 004932 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSE-------MPYGSYGFVERE----T 191 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~-----------i~G~~~~-------~~~~~~~yv~Q~----~ 191 (723)
++|++++|+|+||-||||-+|+|+|.+.|.- |+-. +.|...+ ...-++..-+|- +
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~PNL---G~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iP 174 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELKPNL---GRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIP 174 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCccccCC---CCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHH
Confidence 4899999999999999999999999998863 4321 1111000 000011222222 2
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 004932 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFI 271 (723)
Q Consensus 192 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlL 271 (723)
..+ .-||.|.|.-. ..+...+++++.++|.+..|+-+. +|||||-||++||.+++++.++.++
T Consensus 175 k~~-KG~v~elLk~~----------de~g~~devve~l~L~nvl~r~v~------~LSGGELQr~aIaa~l~rdADvY~F 237 (591)
T COG1245 175 KVV-KGKVGELLKKV----------DERGKFDEVVERLGLENVLDRDVS------ELSGGELQRVAIAAALLRDADVYFF 237 (591)
T ss_pred HHh-cchHHHHHHhh----------hhcCcHHHHHHHhcchhhhhhhhh------hcCchHHHHHHHHHHHhccCCEEEE
Confidence 222 23677766311 122357899999999999999776 9999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 004932 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (723)
Q Consensus 272 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (723)
|||||-||...+....+.+++|++.+++||++-|+. ..+--++|-|.++..
T Consensus 238 DEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDL-avLD~lsD~vhI~YG 288 (591)
T COG1245 238 DEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDL-AVLDYLSDFVHILYG 288 (591)
T ss_pred cCCcccccHHHHHHHHHHHHHHhccCCeEEEEechH-HHHHHhhheeEEEec
Confidence 999999999999999999999998899999976664 556668999998864
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-18 Score=170.64 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 004932 248 LPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (723)
Q Consensus 248 LSGGerqRv~IA~aL~----~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (723)
||||||||++||++|+ .+|+++++|||+++||+..+..+.+.|++++++|.++|+++|++. ....+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999999877899999999863 4568999999964
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.9e-19 Score=191.72 Aligned_cols=184 Identities=21% Similarity=0.288 Sum_probs=142.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (723)
.+.++||-+-.+ ....++..++|.+++|-.+.|+||||||||+|.|+|.|+.|... |...+ .....+
T Consensus 481 gI~lenIpvItP----~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~---g~L~~------P~~~~m 547 (728)
T KOG0064|consen 481 GIILENIPVITP----AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYN---GLLSI------PRPNNI 547 (728)
T ss_pred ceEEecCceecc----CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccC---Ceeec------CCCcce
Confidence 477888776554 34568999999999999999999999999999999999998632 44432 223458
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHH---hcCCCccchHHHHHHHHHHHcCCchHhhhhhcC---CCCCCCCCHHHHHHHHH
Q 004932 185 GFVERETTLIGSLTVREYLYYSAL---LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG---HCYMKGLPCGERRRVRI 258 (723)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~---~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~---~~~~~~LSGGerqRv~I 258 (723)
-|+||.+.+- .-|.+|.+-|+-. ++..+ -.++..+.+|+.+.|++.+.+-.|= .++..-||||||||+++
T Consensus 548 FYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg---~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~m 623 (728)
T KOG0064|consen 548 FYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKG---YTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGM 623 (728)
T ss_pred EeccCCCccC-cCcccceeecCCcHHHHHhcC---CCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHH
Confidence 9999998765 5688887765321 11001 1345678889999999888775431 12334599999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (723)
||.+-++|+.-+|||-||+..+.....+.+..++ .|.+.+-++|.|+
T Consensus 624 ARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrps 670 (728)
T KOG0064|consen 624 ARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPS 670 (728)
T ss_pred HHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCcc
Confidence 9999999999999999999999988888887766 5889999999996
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-18 Score=183.11 Aligned_cols=186 Identities=27% Similarity=0.357 Sum_probs=138.5
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-----CCceeEEEECCEeCCCCCceEEEEcCCC-ccCC
Q 004932 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-----ARMYGEVFVNGAKSEMPYGSYGFVERET-TLIG 195 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~-----~~~~G~I~i~G~~~~~~~~~~~yv~Q~~-~l~~ 195 (723)
...+|+|||+.++||++++|+|+|||||||||++|+|..... ...+|.|.+--.. ..+.+|-+. .-+.
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt------~~a~iPge~Ep~f~ 468 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT------VSALIPGEYEPEFG 468 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc------hhhccCcccccccC
Confidence 346999999999999999999999999999999999974321 0124666543211 122333321 1223
Q ss_pred CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 004932 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPL 275 (723)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPT 275 (723)
.-|+.|.+.- .++ .-....++|..+||.+..-. -....+||-|||.|+.||.++...|.+++.||--
T Consensus 469 ~~tilehl~s-----~tG----D~~~AveILnraGlsDAvly----Rr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~ 535 (593)
T COG2401 469 EVTILEHLRS-----KTG----DLNAAVEILNRAGLSDAVLY----RRKFSELSTGQKERAKLAKLLAERPNVLLIDEFA 535 (593)
T ss_pred chhHHHHHhh-----ccC----chhHHHHHHHhhccchhhhh----hccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhh
Confidence 4566666621 111 22345688999999764322 1245699999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhc-CCEEEEEeCCeEE
Q 004932 276 YHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGL-FDRICLLSNGNTL 327 (723)
Q Consensus 276 sgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv 327 (723)
|.||+.++..+.+-|.++++ .|.|+++++|+|. .+-++ -|+++++.-|++.
T Consensus 536 AhLD~~TA~rVArkiselaRe~giTlivvThrpE-v~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 536 AHLDELTAVRVARKISELAREAGITLIVVTHRPE-VGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHhccCCceeEEeeccccc
Confidence 99999999999999999985 5999999999983 56666 7999988766653
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-17 Score=187.29 Aligned_cols=128 Identities=22% Similarity=0.270 Sum_probs=102.3
Q ss_pred CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC---cEEEEe
Q 004932 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRP---HVLFID 272 (723)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P---~lLlLD 272 (723)
.|||.|...|.... ..-.+.-+.|..+||.-.. . ......|||||.|||-||.+|..+. .+.+||
T Consensus 783 ~MTveEA~~FF~~~-------p~I~rkLqtL~dVGLgYi~---L--GQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLD 850 (935)
T COG0178 783 DMTVEEALEFFEAI-------PKIARKLQTLVDVGLGYIK---L--GQPATTLSGGEAQRVKLAKELSKRSTGKTLYILD 850 (935)
T ss_pred hccHHHHHHHHhcc-------hHHHHHHHHHHHcCcceEe---c--CCccccccchHHHHHHHHHHHhhccCCCeEEEeC
Confidence 36777776664311 1223345667778886332 1 2344589999999999999999887 899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChhHHHH
Q 004932 273 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (723)
Q Consensus 273 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (723)
|||+||-.....++++.|.+|.+.|.|||++-|.. ++...||.|+=| ..|+||+.|+|+++.+
T Consensus 851 EPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 851 EPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 99999999999999999999999999999977764 678899999998 3589999999999875
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-17 Score=207.05 Aligned_cols=128 Identities=18% Similarity=0.252 Sum_probs=102.7
Q ss_pred CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC---CcEEEEe
Q 004932 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR---PHVLFID 272 (723)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~---P~lLlLD 272 (723)
.|||.|.+.|... . .+-.+.-+.|+.+||..+.- ......|||||.||+-||.+|..+ +.+++||
T Consensus 1660 ~mtv~ea~~~F~~------~-~~i~~~L~~L~~vGLgYl~L-----Gq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilD 1727 (1809)
T PRK00635 1660 QTPIEEVAETFPF------L-KKIQKPLQALIDNGLGYLPL-----GQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLD 1727 (1809)
T ss_pred cCCHHHHHHHhhc------c-HHHHHHHHHHHHcCCCeeeC-----CCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEc
Confidence 3677777665421 0 12334567788889875431 224458999999999999999876 7899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe------CCeEEEEeChhHHHH
Q 004932 273 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS------NGNTLFFGETLACLQ 337 (723)
Q Consensus 273 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~------~G~iv~~G~~~~~~~ 337 (723)
|||+||++.....+++.|++|.+.|.|||++-|++ ++.+.||.|+-|- .|+||+.|+|+++.+
T Consensus 1728 EPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1728 EIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 99999999999999999999999999999988876 4666799999983 479999999999865
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-18 Score=174.52 Aligned_cols=147 Identities=18% Similarity=0.140 Sum_probs=102.5
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHH
Q 004932 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (723)
.+++|+++. +|++++|+||||||||||+|+|+|...- ...|.++.. . .+++|.+.+++.+|+.|++
T Consensus 15 ~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~~l--------~~~G~~v~a--~--~~~~q~~~l~~~~~~~d~l 80 (199)
T cd03283 15 RVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNVIL--------AQAGAPVCA--S--SFELPPVKIFTSIRVSDDL 80 (199)
T ss_pred eecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHHHH--------HHcCCEEec--C--ccCcccceEEEeccchhcc
Confidence 466666655 4799999999999999999999985421 112332211 1 2556777889999999999
Q ss_pred HHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 004932 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (723)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~ 283 (723)
.++.. ......+++.++++.+++ .+|+++++||||+|||+...
T Consensus 81 ~~~~s-----~~~~e~~~~~~iL~~~~~--------------------------------~~p~llllDEp~~glD~~~~ 123 (199)
T cd03283 81 RDGIS-----YFYAELRRLKEIVEKAKK--------------------------------GEPVLFLLDEIFKGTNSRER 123 (199)
T ss_pred ccccC-----hHHHHHHHHHHHHHhccC--------------------------------CCCeEEEEecccCCCCHHHH
Confidence 65321 011122445555555431 68999999999999999999
Q ss_pred HHHH-HHHHHHHHcCCEEEEEEeCChHHHHhc--CCEEEEEe
Q 004932 284 LLMM-VTLKKLASTGCTLLFTINQSSTEVFGL--FDRICLLS 322 (723)
Q Consensus 284 ~~i~-~~L~~l~~~g~tvi~t~h~~~~~i~~~--~D~v~vL~ 322 (723)
..+. ..++.+.+.|.++|+++|++. .+..+ .++|-.++
T Consensus 124 ~~l~~~ll~~l~~~~~tiiivTH~~~-~~~~~~~~~~v~~~~ 164 (199)
T cd03283 124 QAASAAVLKFLKNKNTIGIISTHDLE-LADLLDLDSAVRNYH 164 (199)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCcHH-HHHhhhcCCCeEEEE
Confidence 8775 478888878899999999874 45443 44555443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=177.06 Aligned_cols=76 Identities=20% Similarity=0.161 Sum_probs=68.1
Q ss_pred CCCHHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 004932 247 GLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (723)
Q Consensus 247 ~LSGGerqRv~IA~aL~~----~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (723)
.||||||||++||++++. +|+++++||||++||+..+..+.+.|+++.+ +.|+|+++|++. +...+|++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999997664 9999999999999999999999999999865 689999999974 568999999998
Q ss_pred CCe
Q 004932 323 NGN 325 (723)
Q Consensus 323 ~G~ 325 (723)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 763
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.1e-18 Score=173.40 Aligned_cols=152 Identities=21% Similarity=0.221 Sum_probs=112.5
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE-EEcCCCccCCCCCHHH
Q 004932 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG-FVERETTLIGSLTVRE 201 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~-yv~Q~~~l~~~lTV~E 201 (723)
+.+.+|+++...+|++++|.||||+|||||+++++-. .- ..++| |||.+...++
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~-~~------------------la~~g~~vpa~~~~~~------ 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI-VL------------------MAQIGCFVPCDSADIP------ 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH-HH------------------HHHhCCCcCcccEEEe------
Confidence 4578888888889999999999999999999998721 00 01112 3333221111
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH--hhCCcEEEEeCC---CC
Q 004932 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL--VMRPHVLFIDEP---LY 276 (723)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL--~~~P~lLlLDEP---Ts 276 (723)
.++++++.+++.+... +++|.|+++++.+++++ +.+|+++||||| |+
T Consensus 72 -------------------~~~~il~~~~l~d~~~---------~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~ 123 (222)
T cd03285 72 -------------------IVDCILARVGASDSQL---------KGVSTFMAEMLETAAILKSATENSLIIIDELGRGTS 123 (222)
T ss_pred -------------------ccceeEeeeccccchh---------cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCC
Confidence 1234455556654332 38999999999999999 899999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004932 277 HLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
+||+..... ..++.+.+ .|.++|+++|. .++.++||++..+++|++...+.
T Consensus 124 ~lD~~~~~~--~il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 124 TYDGFGLAW--AIAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred hHHHHHHHH--HHHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 999888854 33355554 57899999885 57889999999999999988764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=162.53 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 004932 247 GLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (723)
Q Consensus 247 ~LSGGerqRv~IA~aL~~----~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (723)
+||+||+||++||++|+. +|+++|+|||++|+|+.....+.+.+.++.++|.++|+++|++ ++.+.+|+++.|.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~--~~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP--ELAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhhhhEEEEE
Confidence 599999999999999997 7899999999999999999999999999876688999988886 3556799999986
Q ss_pred C
Q 004932 323 N 323 (723)
Q Consensus 323 ~ 323 (723)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 3
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-17 Score=196.83 Aligned_cols=134 Identities=20% Similarity=0.245 Sum_probs=109.2
Q ss_pred CCCCHHHHHHHHHHhcCCCcc--------chHHHHHHHHHHHcCCchH-hhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 004932 195 GSLTVREYLYYSALLQLPGFF--------CQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (723)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~--------~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~ 265 (723)
..+||.|.+.|...+.++... .+..++++ .++.+||.+. .++.+ ..|||||||||.||++|..+
T Consensus 435 ~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~------~~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 435 SELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSA------GTLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred hcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCch------hhCCHHHHHHHHHHHHHhhC
Confidence 468999999885444332210 01233443 6888888765 66655 49999999999999999999
Q ss_pred C--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChhHHHH
Q 004932 266 P--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (723)
Q Consensus 266 P--~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (723)
| ++++|||||+|||+..+..+++.|++|+++|.|||+++|++. ++ ..||+|++| ++|++++.|+++++..
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 7 999999999999999999999999999988999999999874 55 469999999 9999999999988743
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.5e-17 Score=193.39 Aligned_cols=133 Identities=20% Similarity=0.237 Sum_probs=105.8
Q ss_pred CCCCHHHHHHHHHHhcCCCccch--------HHHHHHHHHHHcCCchH-hhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 004932 195 GSLTVREYLYYSALLQLPGFFCQ--------RKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (723)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~~--------~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~ 265 (723)
-.|||.|.+.|...+.+...... ..+++ +.+..+||... .++. +.+|||||+|||.||++|+.+
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~------~~tLSGGE~QRv~LA~aL~~~ 505 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRA------AGTLSGGEAQRIRLATQIGSG 505 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCC------cCcCCHHHHHHHHHHHHHhhC
Confidence 36899999887655433211000 11222 33667787654 4553 459999999999999999998
Q ss_pred C--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChhHHH
Q 004932 266 P--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACL 336 (723)
Q Consensus 266 P--~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~ 336 (723)
| +++||||||+|||+.....+++.|++++++|.|||+++|++. .+ ..||+|++| ++|++++.|+++++.
T Consensus 506 ~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 506 LTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 6 899999999999999999999999999988999999999864 55 489999999 899999999998874
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-17 Score=168.04 Aligned_cols=152 Identities=20% Similarity=0.207 Sum_probs=102.0
Q ss_pred eeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHH
Q 004932 130 NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSAL 208 (723)
Q Consensus 130 s~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~-~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~ 208 (723)
++.+.+|++++|+|||||||||||++|++..- .. .|... .+ ....+++..| ++..++..+++
T Consensus 23 ~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~---~g~~~-~~-----~~~~i~~~dq---i~~~~~~~d~i----- 85 (202)
T cd03243 23 DINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQ---IGCFV-PA-----ESASIPLVDR---IFTRIGAEDSI----- 85 (202)
T ss_pred eEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHH---cCCCc-cc-----cccccCCcCE---EEEEecCcccc-----
Confidence 44455899999999999999999999995321 11 12111 00 1112233222 11111111111
Q ss_pred hcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 004932 209 LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV 288 (723)
Q Consensus 209 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~ 288 (723)
.. ....++++++ |+..+.+++.+|+++|+||||+|||+.....+..
T Consensus 86 ---------------------------~~------~~s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~ 131 (202)
T cd03243 86 ---------------------------SD------GRSTFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAY 131 (202)
T ss_pred ---------------------------cC------CceeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence 11 1225565555 5777788889999999999999999998888765
Q ss_pred -HHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 289 -TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 289 -~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
+++.+.+.+.++|+++|++ ++.+.+|++..+++|++...++..+
T Consensus 132 ~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 132 AVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCe
Confidence 5677777788999988864 5677899999999999998887544
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-17 Score=174.70 Aligned_cols=207 Identities=21% Similarity=0.275 Sum_probs=143.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC---CCCCCCceeEEEECCEeCC--
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR---LPHSARMYGEVFVNGAKSE-- 178 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~---~~~~~~~~G~I~i~G~~~~-- 178 (723)
+.+.++|.+.+.. ++.++.|-|+.|-.|...+|+||||-||||||+.|+.+ +||. =+|++.-+.+.
T Consensus 263 ~DIKiEnF~ISA~-----Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn----IDvLlCEQEvvad 333 (807)
T KOG0066|consen 263 MDIKIENFDISAQ-----GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN----IDVLLCEQEVVAD 333 (807)
T ss_pred ccceeeeeeeecc-----cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC----CceEeeeeeeeec
Confidence 3577777776653 45788999999999999999999999999999999987 3443 23333332210
Q ss_pred ----------CCCceEEEEcCCCc-----cCCCCCHHHHHHHH-HHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCC
Q 004932 179 ----------MPYGSYGFVERETT-----LIGSLTVREYLYYS-ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH 242 (723)
Q Consensus 179 ----------~~~~~~~yv~Q~~~-----l~~~lTV~E~l~~~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~ 242 (723)
...++...+..++. --...|+.|-+.-. ..++-.+.. ..+.+.+.+|.-+|.+.....+
T Consensus 334 ~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~-sAEarARRILAGLGFskEMQ~r---- 408 (807)
T KOG0066|consen 334 STSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGAD-SAEARARRILAGLGFSKEMQER---- 408 (807)
T ss_pred CcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccc-cchhHHHHHHhhcCCChhHhcC----
Confidence 00011111111110 11234555555322 122211111 1345667788888887554332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 004932 243 CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (723)
Q Consensus 243 ~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (723)
+...+|||-|-||++||||..+|-+|.|||||++||..+..-+-+.|+.+.+ |.++++|+. ..+-..|..|+-|+
T Consensus 409 -Pt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkK---TLLIVSHDQ-gFLD~VCtdIIHLD 483 (807)
T KOG0066|consen 409 -PTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKK---TLLIVSHDQ-GFLDSVCTDIIHLD 483 (807)
T ss_pred -CccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhh---eeEEEeccc-chHHHHHHHHhhhh
Confidence 2347999999999999999999999999999999999999988899988864 788877776 57888999999999
Q ss_pred CCeEEEE
Q 004932 323 NGNTLFF 329 (723)
Q Consensus 323 ~G~iv~~ 329 (723)
+-++-|+
T Consensus 484 ~qkLhyY 490 (807)
T KOG0066|consen 484 NQKLHYY 490 (807)
T ss_pred hhhhhhh
Confidence 8887655
|
|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=160.49 Aligned_cols=77 Identities=18% Similarity=0.213 Sum_probs=64.0
Q ss_pred CCCCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcC
Q 004932 245 MKGLPCGERRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 315 (723)
Q Consensus 245 ~~~LSGGerqRv~IA~aL~---------~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~ 315 (723)
..-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++. .+++++|+.. .+.++|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~~-~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDLA-DFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCch-hccchh
Confidence 3458999999999999985 6999999999999999999999999998753 3555566653 566667
Q ss_pred ---CEEEEEeCCeE
Q 004932 316 ---DRICLLSNGNT 326 (723)
Q Consensus 316 ---D~v~vL~~G~i 326 (723)
++++.|++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999986
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-15 Score=154.26 Aligned_cols=156 Identities=18% Similarity=0.145 Sum_probs=105.4
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHH
Q 004932 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (723)
.+.+|+++..++ ++++|+||||||||||||+|++..-. |. .|.........++++.| +++.+++.|++
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l-----~~---~g~~vp~~~~~i~~~~~---i~~~~~~~~~l 86 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL-----AQ---IGSFVPASKAEIGVVDR---IFTRIGASDDL 86 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH-----hc---cCCeeccccceecceee---EeccCCchhhh
Confidence 467777777766 99999999999999999999875322 11 12222112235666644 56777777776
Q ss_pred HHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCH--HHHHHHHHHHHHhhCCcEEEEeCC---CCCC
Q 004932 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC--GERRRVRIARELVMRPHVLFIDEP---LYHL 278 (723)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSG--GerqRv~IA~aL~~~P~lLlLDEP---TsgL 278 (723)
..+ .|. .|+++++-+...+.+|++++|||| |++|
T Consensus 87 s~g-----------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~l 125 (216)
T cd03284 87 AGG-----------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTSTY 125 (216)
T ss_pred ccC-----------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChH
Confidence 321 111 123333333344579999999999 8888
Q ss_pred CHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 279 DSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 279 D~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
|.... ....++.+.+. +.++|+++|+. ++.+++|++..+.+|++...++.+++.
T Consensus 126 D~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 126 DGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred HHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 87552 23455556655 88999988884 678899998888899988877766543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.6e-15 Score=151.95 Aligned_cols=136 Identities=19% Similarity=0.205 Sum_probs=96.1
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 004932 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (723)
++.+.+|+++..++|++++|+||||+|||||+++|++..-- +++ | .|| +...+.+++.|
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-----a~~---G----------~~v---pa~~~~l~~~d 73 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM-----AQI---G----------CFV---PAEYATLPIFN 73 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH-----HHc---C----------CCc---chhhcCccChh
Confidence 34688899999999999999999999999999999886311 111 1 111 22334456666
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 004932 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281 (723)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~ 281 (723)
++.. .++..+..++. ...+|+|++|+ ..+.+++.+|+++++|||++|+|+.
T Consensus 74 ~I~~----------------------~~~~~d~~~~~------~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~ 124 (204)
T cd03282 74 RLLS----------------------RLSNDDSMERN------LSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSA 124 (204)
T ss_pred heeE----------------------ecCCccccchh------hhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHH
Confidence 5532 11222222221 23789999965 5666788999999999999999997
Q ss_pred HHHHH-HHHHHHHHHcCCEEEEEEeCC
Q 004932 282 SALLM-MVTLKKLASTGCTLLFTINQS 307 (723)
Q Consensus 282 ~~~~i-~~~L~~l~~~g~tvi~t~h~~ 307 (723)
....+ ...++.+.+.|.++|+++|..
T Consensus 125 ~~~~l~~~il~~l~~~~~~~i~~TH~~ 151 (204)
T cd03282 125 DGFAISLAILECLIKKESTVFFATHFR 151 (204)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEECChH
Confidence 76665 456778888899999988875
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=154.73 Aligned_cols=175 Identities=25% Similarity=0.291 Sum_probs=132.3
Q ss_pred ceeeceeeEEeCC-----cEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCC
Q 004932 124 KVVKSSNGYALPG-----TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLT 198 (723)
Q Consensus 124 ~iL~~vs~~v~~G-----e~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lT 198 (723)
..+.+..+.++.| |++..+|.||-|||||+++++|+++|+. .|+|-. -.++|=+|...-=..-|
T Consensus 350 k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~--~~e~p~---------lnVSykpqkispK~~~t 418 (592)
T KOG0063|consen 350 KTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDE--GGEIPV---------LNVSYKPQKISPKREGT 418 (592)
T ss_pred eeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCc--cCcccc---------cceeccccccCccccch
Confidence 3445555555544 6899999999999999999999999874 344422 24666677654445678
Q ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 004932 199 VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 278 (723)
Q Consensus 199 V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgL 278 (723)
|++.+.--.+- .-.....+.++++-+.+++..|+-+. +|||||.|||+||..|=..+++.+.|||.+-|
T Consensus 419 vR~ll~~kIr~-----ay~~pqF~~dvmkpL~ie~i~dqevq------~lSggelQRval~KOGGKpAdvYliDEpsAyl 487 (592)
T KOG0063|consen 419 VRQLLHTKIRD-----AYMHPQFVNDVMKPLQIENIIDQEVQ------GLSGGELQRVALALCLGKPADVYLIDEPSAYL 487 (592)
T ss_pred HHHHHHHHhHh-----hhcCHHHHHhhhhhhhHHHHHhHHhh------cCCchhhHHHHHHHhcCCCCceEEecCchhhc
Confidence 99887431110 00134567889999999999988665 99999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEE
Q 004932 279 DSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLL 321 (723)
Q Consensus 279 D~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (723)
|+..+..--+.+++.. +.++|-.++-|+- ...--++|||++.
T Consensus 488 DSeQRi~AskvikRfilhakktafvVEhdf-ImaTYladrvivf 530 (592)
T KOG0063|consen 488 DSEQRIIASKVIKRFILHAKKTAFVVEHDF-IMATYLADRVIVF 530 (592)
T ss_pred ChHHHHHHHHHHHHHHHhccchhhhhhhHH-HHHHhhcceeEEE
Confidence 9999999999999976 5667777766653 2334579998765
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-14 Score=151.99 Aligned_cols=138 Identities=23% Similarity=0.229 Sum_probs=92.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--C----ceEEEEcCCCccCCCCCHHHHHHHHHHhc
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--Y----GSYGFVERETTLIGSLTVREYLYYSALLQ 210 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--~----~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~ 210 (723)
.-++|+||||||||||+++|+|.++++. |+|.++|+++... . ..+++++|.+ +.+.++|.++..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~---G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~------ 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGI---SQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP------ 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCC---ceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch------
Confidence 5789999999999999999999999875 9999999875321 0 1244555544 233344433320
Q ss_pred CCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 004932 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290 (723)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L 290 (723)
|........+..+|+++++|||++ ...+..++
T Consensus 182 ------------------------------------------k~~~~~~~i~~~~P~villDE~~~------~e~~~~l~ 213 (270)
T TIGR02858 182 ------------------------------------------KAEGMMMLIRSMSPDVIVVDEIGR------EEDVEALL 213 (270)
T ss_pred ------------------------------------------HHHHHHHHHHhCCCCEEEEeCCCc------HHHHHHHH
Confidence 000112233336999999999974 33344455
Q ss_pred HHHHHcCCEEEEEEeCChHH-H-----------HhcCCEEEEEeCCeEEEEeChhHH
Q 004932 291 KKLASTGCTLLFTINQSSTE-V-----------FGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 291 ~~l~~~g~tvi~t~h~~~~~-i-----------~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
+.+ ++|.++|+|+|.+..+ + ..+|||+++|++|+ ..|+++++
T Consensus 214 ~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 214 EAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 554 4699999999976432 2 26799999999887 56665543
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-14 Score=144.02 Aligned_cols=81 Identities=15% Similarity=0.098 Sum_probs=57.8
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeC
Q 004932 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM-VTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSN 323 (723)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~-~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (723)
..+|+|++|...+.+ .+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|+++|++ ++.+++|+.--+.+
T Consensus 60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~ 136 (185)
T smart00534 60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRN 136 (185)
T ss_pred cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceE
Confidence 378887776333332 23499999999999999999877765 566777764 88999999986 57778876444444
Q ss_pred CeEEEE
Q 004932 324 GNTLFF 329 (723)
Q Consensus 324 G~iv~~ 329 (723)
++....
T Consensus 137 ~~~~~~ 142 (185)
T smart00534 137 LHMSAD 142 (185)
T ss_pred EEEEEE
Confidence 544433
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-13 Score=139.38 Aligned_cols=73 Identities=25% Similarity=0.263 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 004932 247 GLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (723)
Q Consensus 247 ~LSGGerqRv~IA~aL~----~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (723)
.||||||.+++||--|+ .+.++++||||.++||...+..+.++|+++.++ .-+|+++|++ .+++.+|+.+.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~-~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQ-SQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTT-SEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc--ccccccccccccc
Confidence 79999999999997765 367899999999999999999999999998754 5567778875 6889999988763
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.9e-12 Score=130.70 Aligned_cols=118 Identities=25% Similarity=0.310 Sum_probs=80.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccC-CCCCHHHHHHHHHHhcCC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI-GSLTVREYLYYSALLQLP 212 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G--~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~-~~lTV~E~l~~~~~~~~~ 212 (723)
+..++|.||||+|||||||.++. .+.. .|...... ...++|..|....+ ...++.+
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~----~G~~v~a~------~~~~~~~d~i~~~l~~~~si~~----------- 87 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAH----IGSFVPAD------SATIGLVDKIFTRMSSRESVSS----------- 87 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHh----CCCeeEcC------CcEEeeeeeeeeeeCCccChhh-----------
Confidence 37999999999999999999984 3322 14443221 13456666643221 1111111
Q ss_pred CccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCC--HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH-HHH
Q 004932 213 GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP--CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM-MVT 289 (723)
Q Consensus 213 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LS--GGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i-~~~ 289 (723)
++| .-|.||++++++++.+|+++|+|||++|+|+.....+ ...
T Consensus 88 ----------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ai 133 (213)
T cd03281 88 ----------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIAT 133 (213)
T ss_pred ----------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHH
Confidence 122 2467999999999999999999999999999765554 568
Q ss_pred HHHHHHcC---CEEEEEEeCCh
Q 004932 290 LKKLASTG---CTLLFTINQSS 308 (723)
Q Consensus 290 L~~l~~~g---~tvi~t~h~~~ 308 (723)
++++.+.| .++|+++|.+.
T Consensus 134 l~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 134 IEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred HHHHHhcCCCCcEEEEEcChHH
Confidence 88887642 47888888763
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-10 Score=120.45 Aligned_cols=226 Identities=15% Similarity=0.151 Sum_probs=158.1
Q ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCC-CCC--hHHHH----HHHHHHHHHHHHHHHHHHhhHHHHH-hhHHH
Q 004932 441 RSLLIMSREWKYYWLRLILCMILTLCVGTVFSGL-GHS--LSSVV----TRVAAIFVFVSFNSLLNIAGVPALM-KEIKT 512 (723)
Q Consensus 441 R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~l-~~~--~~~i~----~r~g~lff~~~~~~~~~~~~~~~~~-~er~v 512 (723)
|+++...|||..+..-+++.+++.+++|.++-+. +.+ ..+.. --.|.+.+.+...+... +..... .|+.+
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~~--~~~~~~~~~~g~ 78 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFFS--GISVIWDRQFGF 78 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHhCH
Confidence 6778889999999888999999999999887543 111 11211 11233333222222221 111111 22233
Q ss_pred HHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 004932 513 YASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVY 592 (723)
Q Consensus 513 ~~rE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y~m~Gl~~~~~~F~~f~l~~~~~~~~~~s~~~~i~~~~~~~~ 592 (723)
+.| ....-.+...|+++|.+.+++..++..+++.++.|++.+++. ..++.+++..++..++..++|.++++.+++.+
T Consensus 79 ~~~-~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 79 LKE-ILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 333 223344578899999999999999999999999998877654 34555555566667778899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCcCCCCCcccccHHHHHhhhcCccc
Q 004932 593 WSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISGYQALQSAYDISS 672 (723)
Q Consensus 593 ~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~w~~yiSp~~Ya~~al~~nef~~~~~~~~~~~~~~G~~~L~~~~~~~~ 672 (723)
.+..+.+.+..+++.+||.+.|.+.+|+ |..|+.+++|.+|+.|++-..-..+ +
T Consensus 156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~--~~~~i~~~~P~~~~~~~~r~~~~~~---------------------~--- 209 (236)
T TIGR01247 156 GFQIIMSMLMLPMFFLSGAFYPITTMPA--WMQGLAKINPLTYAVDGARYYLAGV---------------------S--- 209 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHhCHH--HHHHHHHHCcHHHHHHHHHHHHhCC---------------------C---
Confidence 8888899999999999999999999996 5567999999999999855332210 0
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHH
Q 004932 673 KSNSKWGNLLVLFLMAIGYRLLLFV 697 (723)
Q Consensus 673 ~~~~~w~~~~iL~~~~~~~~~l~~i 697 (723)
...+.|.++++|+++.+++.+++..
T Consensus 210 ~~~~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 210 PTFPLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHH
Confidence 0124567889999998888777654
|
This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-12 Score=154.03 Aligned_cols=129 Identities=14% Similarity=0.125 Sum_probs=89.9
Q ss_pred eeeEEeCC-cEEEEECCCCCcHHHHHHHHHcC-CCCCCCcee-EEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHH
Q 004932 129 SNGYALPG-TMTVIMGPAKSGKSTLLRAIAGR-LPHSARMYG-EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYY 205 (723)
Q Consensus 129 vs~~v~~G-e~~aIlGpsGsGKSTLL~~L~G~-~~~~~~~~G-~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~ 205 (723)
+++.+.+| ++++|.||||+|||||||+|+|. +.+.. | .|..+ ....++|..|...
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~---G~~Vpa~------~~~~~~~~d~i~~------------- 371 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQS---GIPIPAN------EHSEIPYFEEIFA------------- 371 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHh---CCCccCC------ccccccchhheee-------------
Confidence 68888877 89999999999999999999987 22221 3 11110 0011222111100
Q ss_pred HHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 004932 206 SALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285 (723)
Q Consensus 206 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~ 285 (723)
.++..+.... ....+|+|+++++.|++.+ .+|+++|+|||++|+|+.....
T Consensus 372 ----------------------~i~~~~si~~------~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~a 422 (771)
T TIGR01069 372 ----------------------DIGDEQSIEQ------NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSA 422 (771)
T ss_pred ----------------------ecChHhHHhh------hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHH
Confidence 0000000111 2347999999999998877 8999999999999999999999
Q ss_pred H-HHHHHHHHHcCCEEEEEEeCCh
Q 004932 286 M-MVTLKKLASTGCTLLFTINQSS 308 (723)
Q Consensus 286 i-~~~L~~l~~~g~tvi~t~h~~~ 308 (723)
+ ..+|+.+.+.|.++|++||+..
T Consensus 423 la~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 423 LAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred HHHHHHHHHHhcCCEEEEECChHH
Confidence 8 5788888888999999888864
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-11 Score=133.13 Aligned_cols=168 Identities=24% Similarity=0.311 Sum_probs=120.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCCCCCce-----------EEEEcCCCc
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSEMPYGS-----------YGFVERETT 192 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~-----------i~G~~~~~~~~~-----------~~yv~Q~~~ 192 (723)
||++++++|-||-||||-|++|+|.++|.- |.-. +.|..++..... .-||.|-+.
T Consensus 99 pg~vlglvgtngigkstAlkilagk~kpnl---g~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr 175 (592)
T KOG0063|consen 99 PGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPR 175 (592)
T ss_pred cchhccccccCcccHHHHHHHHhCCCCCCC---CCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHH
Confidence 899999999999999999999999998853 2210 001000000000 001111111
Q ss_pred cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 004932 193 LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFID 272 (723)
Q Consensus 193 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLD 272 (723)
.. ..+|.++|.- ...++..+++++.+.|....++-+. .|||||-||.+||.+-+++.++.++|
T Consensus 176 ~~-k~~v~~~l~~----------~~~r~~~~~~~~~~~L~~~~~re~~------~lsggelqrfaia~~~vq~advyMFD 238 (592)
T KOG0063|consen 176 AV-KGTVGSLLDR----------KDERDNKEEVCDQLDLNNLLDREVE------QLSGGELQRFAIAMVCVQKADVYMFD 238 (592)
T ss_pred HH-HHHHHHHHHH----------HhhcccHHHHHHHHHHhhHHHhhhh------hcccchhhhhhhhhhhhhhcceeEec
Confidence 00 1233333311 0123356788999999999988776 89999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 004932 273 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (723)
Q Consensus 273 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (723)
||.+-||...+..-...++.|..-..=||++-|+.+ ..--+.|-++.|..
T Consensus 239 EpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLs-VLDylSDFiCcLYG 288 (592)
T KOG0063|consen 239 EPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLS-VLDYLSDFICCLYG 288 (592)
T ss_pred CCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeech-HHHhhhcceeEEec
Confidence 999999999999999999999987788888777764 56667898988864
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.4e-12 Score=128.56 Aligned_cols=44 Identities=23% Similarity=0.362 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 004932 252 ERRRVRIARELVMRPHVLFIDEPL-----YHLDSVSALLMMVTLKKLAS 295 (723)
Q Consensus 252 erqRv~IA~aL~~~P~lLlLDEPT-----sgLD~~~~~~i~~~L~~l~~ 295 (723)
|++++.||++++.+|+++++|||| +|||+.+...+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999874
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.7e-12 Score=112.72 Aligned_cols=71 Identities=11% Similarity=0.039 Sum_probs=57.5
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CCceEEEEcCCCccCCCC
Q 004932 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----PYGSYGFVERETTLIGSL 197 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~l 197 (723)
..+|+++++.+++||+++|+||||||||||++++. +|++.++|.+... ..+..++++|+ ++ ..
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf-~~ 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GL-EI 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cc-hh
Confidence 46899999999999999999999999999999986 2899999987421 22345677666 33 45
Q ss_pred CHHHHHHH
Q 004932 198 TVREYLYY 205 (723)
Q Consensus 198 TV~E~l~~ 205 (723)
|++|||.+
T Consensus 70 ti~~Ni~~ 77 (107)
T cd00820 70 RLRLNIFL 77 (107)
T ss_pred hHHhhcee
Confidence 99999976
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.3e-11 Score=123.52 Aligned_cols=150 Identities=19% Similarity=0.226 Sum_probs=93.0
Q ss_pred EEeCCcEEEEECCCCCcHHHH-HHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhc
Q 004932 132 YALPGTMTVIMGPAKSGKSTL-LRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (723)
Q Consensus 132 ~v~~Ge~~aIlGpsGsGKSTL-L~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~ 210 (723)
-+++|+++.|.|+|||||||| ++++++..+++. . +.|+.. ..|..+.+.....+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~---~---------------~~yi~~------e~~~~~~~~~~~~~g 75 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGY---S---------------VSYVST------QLTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCC---c---------------EEEEeC------CCCHHHHHHHHHHhC
Confidence 367899999999999999999 689998765431 1 233321 224455554332222
Q ss_pred CCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhh----CCcEEEEeCCCCCC----CHHH
Q 004932 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM----RPHVLFIDEPLYHL----DSVS 282 (723)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~----~P~lLlLDEPTsgL----D~~~ 282 (723)
.. +++.... +.-... ... ..+|+++.++-.+.+.+-. +|+++++||||+++ |+..
T Consensus 76 ~~---------~~~~~~~-~~l~~~------~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~ 138 (230)
T PRK08533 76 YD---------INKKLIS-GKLLYI------PVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVA 138 (230)
T ss_pred Cc---------hHHHhhc-CcEEEE------Eec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHH
Confidence 11 1111110 100000 011 2467776666555544433 69999999999999 8888
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeCChH------HHHhcCCEEEEEe
Q 004932 283 ALLMMVTLKKLASTGCTLLFTINQSST------EVFGLFDRICLLS 322 (723)
Q Consensus 283 ~~~i~~~L~~l~~~g~tvi~t~h~~~~------~i~~~~D~v~vL~ 322 (723)
...+.+.++.++++|.|+++++|+... .+..++|-|+.|+
T Consensus 139 ~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 139 VNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 889999999998888888886554320 1245678888776
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-11 Score=143.01 Aligned_cols=77 Identities=21% Similarity=0.179 Sum_probs=69.6
Q ss_pred CCCCHHHHHHHHHHHHHhhC----CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE
Q 004932 246 KGLPCGERRRVRIARELVMR----PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (723)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~----P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (723)
+.+||||+||++||++++.. |++||+||||+|||+.++..+.+.|+++++ +.+||+++|+|. +...||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999975 899999999974 44689999999
Q ss_pred eCCe
Q 004932 322 SNGN 325 (723)
Q Consensus 322 ~~G~ 325 (723)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8764
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-10 Score=115.92 Aligned_cols=151 Identities=18% Similarity=0.143 Sum_probs=121.6
Q ss_pred chHHHHHHHHHHHHhHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004932 523 GALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWSILTLISVH 602 (723)
Q Consensus 523 ~~~~y~la~~l~elP~~~i~~~if~~i~Y~m~Gl~~~~~~F~~f~l~~~~~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~ 602 (723)
+...++++|.+..++..+++++++..+.|++.|++.. +++.+++.+++..++..+++.++++++++... ..+..+.
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~--~~~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGR--FLALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchH--HHHHHHH
Confidence 3457799999999999999999999999999999874 56777778888888999999999999997653 3344445
Q ss_pred HHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCcCCCCCcccccHHHHHhhhcCccccCCCchhHHH
Q 004932 603 VVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISGYQALQSAYDISSKSNSKWGNLL 682 (723)
Q Consensus 603 ~~~~lf~Gf~i~~~~iP~~~W~~w~~yiSp~~Ya~~al~~nef~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~~w~~~~ 682 (723)
.+.++++|.+.|.+.+|+ |..|+.|++|.+|+.+++-...+.+ .....|.+++
T Consensus 134 ~~~~~~sG~~~P~~~~P~--~~~~i~~~~P~t~~~~~~r~~~~~~-------------------------~~~~~~~~~~ 186 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPA--FFQAIHPFLPMTYSVNGLRQLISGG-------------------------NDGTLWQAVA 186 (208)
T ss_pred HHHHccCCCccchhhCHH--HHHHhhhhCcHHHHHHHHHHHHhCC-------------------------cHHHHHHHHH
Confidence 566678898899999996 5567999999999999987665422 0124678899
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 004932 683 VLFLMAIGYRLLLFVLLYLRVK 704 (723)
Q Consensus 683 iL~~~~~~~~~l~~i~L~~~~~ 704 (723)
+|+++.+++.++++...|+++|
T Consensus 187 ~L~~~~~v~~~la~~~~~~~~~ 208 (208)
T TIGR03062 187 VLLLILVVFLALSLLSARRKRR 208 (208)
T ss_pred HHHHHHHHHHHHHHHHHhhhcC
Confidence 9999999999998888776553
|
This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057. |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-10 Score=119.94 Aligned_cols=133 Identities=17% Similarity=0.234 Sum_probs=85.6
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHc-CCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 004932 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G-~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (723)
+.+.+|+++.+.+|++++|+||||+||||++++|++ .+.+.. |..... +. -.++|..| ++-.+...|
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~---G~~v~a-~~-----~~~~~~~~---i~~~~~~~d 85 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQI---GSFVPA-SS-----ATLSIFDS---VLTRMGASD 85 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhC---CCEEEc-Cc-----eEEeccce---EEEEecCcc
Confidence 457889999999999999999999999999999999 333432 554322 11 11222222 111111111
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCC--HHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 004932 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP--CGERRRVRIARELVMRPHVLFIDEPLYHLD 279 (723)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LS--GGerqRv~IA~aL~~~P~lLlLDEPTsgLD 279 (723)
++. .++| ..|-+|++-...-+.+|+++|+|||.+|.|
T Consensus 86 ~~~-----------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~ 124 (222)
T cd03287 86 SIQ-----------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGTS 124 (222)
T ss_pred ccc-----------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCC
Confidence 110 0111 123444444444567899999999999999
Q ss_pred HHHHHHH-HHHHHHHHHc-CCEEEEEEeCCh
Q 004932 280 SVSALLM-MVTLKKLAST-GCTLLFTINQSS 308 (723)
Q Consensus 280 ~~~~~~i-~~~L~~l~~~-g~tvi~t~h~~~ 308 (723)
+.....+ ...++.+.+. +.++|+++|.+.
T Consensus 125 ~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 125 THDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred hhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 7777664 5677777765 889999899863
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-09 Score=111.46 Aligned_cols=223 Identities=13% Similarity=0.101 Sum_probs=143.1
Q ss_pred HhChHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHhhHH--HHHhhccCCCcc
Q 004932 447 SREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVT-RVAAIFVFVSFNSLLNIAGVPALMKEIK--TYASEESNMHSG 523 (723)
Q Consensus 447 ~Rd~~~~~~r~~~~i~~al~~G~~f~~l~~~~~~i~~-r~g~lff~~~~~~~~~~~~~~~~~~er~--v~~rE~~~g~Y~ 523 (723)
+|||.....-+.+.+++-++++.+|-+-. +.+..+. -.|.+-+...+.+....+ -....||. .+.|=+..- .+
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~er~~G~l~rl~~~P-~~ 77 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAAISTAFTGQA--IAVARDRRYGALKRLGATP-LP 77 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHHHHHHHHHHH--HHHHHHHHhCHHHHHhcCC-Cc
Confidence 69999999889988888888888776521 1111211 222222222221111111 12233443 444444443 36
Q ss_pred hHHHHHHHHHHHHhHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHH
Q 004932 524 ALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVASIWK---DVYWSILTLIS 600 (723)
Q Consensus 524 ~~~y~la~~l~elP~~~i~~~if~~i~Y~m~Gl~~~~~~F~~f~l~~~~~~~~~~s~~~~i~~~~~---~~~~a~~~~~~ 600 (723)
...|+++|++..++..++..+++. +++++.|++.....+ .+++.+.+..+.+.+++.+++++.+ +.+.+..++..
T Consensus 78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 155 (232)
T TIGR00025 78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL 155 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 789999999988888777665554 556778988654333 3333444555566677777777764 44555777888
Q ss_pred HHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCcCCCCCcccccHHHHHhhhcCccccCCCchhH
Q 004932 601 VHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISGYQALQSAYDISSKSNSKWGN 680 (723)
Q Consensus 601 ~~~~~~lf~Gf~i~~~~iP~~~W~~w~~yiSp~~Ya~~al~~nef~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~~w~~ 680 (723)
+..+++++||.+.|.+.+|+ |..|+.+++|++|+.+++-.--..+ - .....|.+
T Consensus 156 ~~~p~~~lSG~~~P~~~mP~--~lq~i~~~~P~t~~~~~~r~~~~~~----------------------~--~~~~~~~~ 209 (232)
T TIGR00025 156 VWFIFALLSAGLVPLNLIPT--WIKWFVRVQPSSYATEALRQAATVS----------------------V--DTFGAVRD 209 (232)
T ss_pred HHHHHHHHhheeeecccccH--HHHHHHHhCcHHHHHHHHHHHHcCC----------------------C--ChhhHHHH
Confidence 88899999999999999996 6677999999999999765332111 0 11346778
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 004932 681 LLVLFLMAIGYRLLLFVLLYL 701 (723)
Q Consensus 681 ~~iL~~~~~~~~~l~~i~L~~ 701 (723)
+++++++.+++..++....|+
T Consensus 210 ~~~l~~~~~v~~~la~~~~~r 230 (232)
T TIGR00025 210 LVVVLAFWVALAALAAIRLRR 230 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 888888888877777665543
|
This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance. |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.5e-11 Score=116.98 Aligned_cols=79 Identities=23% Similarity=0.084 Sum_probs=65.6
Q ss_pred CCCCCCHHHHH------HHHHHHHHhhCCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCEEEEEEeCChH-----
Q 004932 244 YMKGLPCGERR------RVRIARELVMRPHVLFIDEPLYHLD---SVSALLMMVTLKKLASTGCTLLFTINQSST----- 309 (723)
Q Consensus 244 ~~~~LSGGerq------Rv~IA~aL~~~P~lLlLDEPTsgLD---~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~----- 309 (723)
.+..+|+||+| +.........+|+++++|||++.+| ......+.+.++.+++.|.|+|+++|....
T Consensus 68 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~ 147 (187)
T cd01124 68 DPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGF 147 (187)
T ss_pred CccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCccc
Confidence 44589999998 5555555667999999999999999 888888999999999889999998887642
Q ss_pred ---HHHhcCCEEEEEe
Q 004932 310 ---EVFGLFDRICLLS 322 (723)
Q Consensus 310 ---~i~~~~D~v~vL~ 322 (723)
.+..+||.|+.|+
T Consensus 148 ~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 148 GGGDVEYLVDGVIRLR 163 (187)
T ss_pred CcCceeEeeeEEEEEE
Confidence 2678899999986
|
A related protein is found in archaea. |
| >TIGR01291 nodJ ABC-2 type transporter, NodJ family | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.8e-09 Score=110.69 Aligned_cols=234 Identities=16% Similarity=0.037 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHhhHHH
Q 004932 435 VAVLTWRSLLIMSRE-WKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNIA-GVPALMKEIKT 512 (723)
Q Consensus 435 ~~~l~~R~~~~~~Rd-~~~~~~r~~~~i~~al~~G~~f~~l~~~~~~i~~r~g~lff~~~~~~~~~~~-~~~~~~~er~v 512 (723)
...+.+|+++..+|+ |......+++.++.-+++|..|-....+..+. + -.-|..-...++..+. ++- ..--..
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~-~--y~~f~~pg~l~~~~~~~~~~--~~~~~~ 81 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGV-S--YAAFLAAGMVATSAMTASTF--ETIYAT 81 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC-C--HHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 455679999999999 99999999999988888988875431111111 1 1112222222111110 100 000123
Q ss_pred HHhhccCCCc--------chHHHHHHHHHHHHhHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004932 513 YASEESNMHS--------GALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVV 584 (723)
Q Consensus 513 ~~rE~~~g~Y--------~~~~y~la~~l~elP~~~i~~~if~~i~Y~m~Gl~~~~~~F~~f~l~~~~~~~~~~s~~~~i 584 (723)
+.|||.+|.+ ++..+.+|+++.+.-..++..++...+.++ .|.... ...+.++..+.+..++..++|.++
T Consensus 82 ~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~ 159 (253)
T TIGR01291 82 FARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLV 159 (253)
T ss_pred HHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444442 578899999998877777766665555443 344433 334444455566677778999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCcCCCCCcccccHHHHH
Q 004932 585 ASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISGYQAL 664 (723)
Q Consensus 585 ~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~w~~yiSp~~Ya~~al~~nef~~~~~~~~~~~~~~G~~~L 664 (723)
+.+.++.+.+..+...+..+++.+||.+.|.+.+|+ |..++.+++|++|+.|++=.. +.|
T Consensus 160 a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~--~lq~i~~~nPlt~~v~~~R~~-~~g----------------- 219 (253)
T TIGR01291 160 AALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLND--VIQGMTHFLPLAHSIDDIRPV-MLG----------------- 219 (253)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChH--HHHHHHHHCcHHHHHHHHHHH-HhC-----------------
Confidence 999999999888889999999999999999999996 556689999999999885433 211
Q ss_pred hhhcCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 004932 665 QSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLR 702 (723)
Q Consensus 665 ~~~~~~~~~~~~~w~~~~iL~~~~~~~~~l~~i~L~~~ 702 (723)
- ...+.|.++++++++.+++.+++....|++
T Consensus 220 -----~--~~~~~~~~~~~l~~~~vv~~~la~~~fr~~ 250 (253)
T TIGR01291 220 -----G--PGTQVGLHLGALCLYAVVPFFISAALLRRR 250 (253)
T ss_pred -----C--CcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 011245678888888888887777666553
|
Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins. |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.6e-11 Score=138.01 Aligned_cols=76 Identities=18% Similarity=0.221 Sum_probs=68.8
Q ss_pred CCCCHHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE
Q 004932 246 KGLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (723)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~----~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (723)
+.+||||+||++||++++. +|+++|+|||++|||..++..+.+.|+++++ +.+|||++|+|. +..+||+.+++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 3589999999999999997 5899999999999999999999999999975 689999999984 56899999999
Q ss_pred eCC
Q 004932 322 SNG 324 (723)
Q Consensus 322 ~~G 324 (723)
.++
T Consensus 506 ~k~ 508 (553)
T PRK10869 506 SKE 508 (553)
T ss_pred ecc
Confidence 865
|
|
| >TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.3e-09 Score=108.87 Aligned_cols=237 Identities=12% Similarity=0.071 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCC-CC------Ch---HHHHHHHHHHHHHHHHHHHHHHh
Q 004932 432 ATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGL-GH------SL---SSVVTRVAAIFVFVSFNSLLNIA 501 (723)
Q Consensus 432 ~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~l-~~------~~---~~i~~r~g~lff~~~~~~~~~~~ 501 (723)
+++++.+++|.++...|||..+..-+++.++.-+++|.+|-.. +. +. -...--.|.+-+.+.+.++..
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~-- 78 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQS-- 78 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHh--
Confidence 3689999999999999999999999999999999999998542 11 10 011112233322222222211
Q ss_pred hHHHHHhhH--HHHHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHH
Q 004932 502 GVPALMKEI--KTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEG 579 (723)
Q Consensus 502 ~~~~~~~er--~v~~rE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y~m~Gl~~~~~~F~~f~l~~~~~~~~~~s 579 (723)
+. ....|| ..+.+=+... -+...+.+++++..+-..++..+++.++.+. .|.+.....++.....+++..++..+
T Consensus 79 ~~-~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~ 155 (253)
T TIGR03861 79 SL-SMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGA 155 (253)
T ss_pred hh-HhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 11 122222 2333333333 3567799999999987777776665555443 36665544444444445556677789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCc-ccccccccccCHhHHHHHHHHHHHhCCCcCCCCCcccc
Q 004932 580 LMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPG-PVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTI 658 (723)
Q Consensus 580 ~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~-~~W~~w~~yiSp~~Ya~~al~~nef~~~~~~~~~~~~~ 658 (723)
+|.+++.++++.+....+.+.+..+++..||.+.+.+.+|. +-|..|+.+++|+.|..|++=.- +.|
T Consensus 156 lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~-~~g----------- 223 (253)
T TIGR03861 156 LGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFA-LYG----------- 223 (253)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHH-HhC-----------
Confidence 99999999999988888888888899999999988877742 13667789999999998776422 111
Q ss_pred cHHHHHhhhcCccccCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 004932 659 SGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYL 701 (723)
Q Consensus 659 ~G~~~L~~~~~~~~~~~~~w~~~~iL~~~~~~~~~l~~i~L~~ 701 (723)
+ .-|..+++++++.+++.+++....|+
T Consensus 224 ----------~------~~~~~~~~~~~~~~v~~~~~~~~fr~ 250 (253)
T TIGR03861 224 ----------Q------LNLPALGWTLGATTLFTLLAFWGFDP 250 (253)
T ss_pred ----------C------cchhHHHHHHHHHHHHHHHHHHHhhc
Confidence 0 12555667777777777777665544
|
Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis. |
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.2e-11 Score=147.81 Aligned_cols=81 Identities=19% Similarity=0.070 Sum_probs=74.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhh----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHH
Q 004932 243 CYMKGLPCGERRRVRIARELVM----------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVF 312 (723)
Q Consensus 243 ~~~~~LSGGerqRv~IA~aL~~----------~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~ 312 (723)
..++.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+.+.+.|++|++++|.+ ....
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~-~~~~ 1024 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVP-EFRE 1024 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHH
Confidence 3567999999999999999996 7999999999999999999999999999988899999988887 5788
Q ss_pred hcCCEEEEEeCC
Q 004932 313 GLFDRICLLSNG 324 (723)
Q Consensus 313 ~~~D~v~vL~~G 324 (723)
.++|+|.|++.|
T Consensus 1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1025 RIPHRILVKKTN 1036 (1042)
T ss_pred hhCCEEEEEECC
Confidence 999999999754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.8e-11 Score=139.79 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=69.5
Q ss_pred CCCCCCHHHHHHHHHHHHHh----------hCCcEEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHH
Q 004932 244 YMKGLPCGERRRVRIARELV----------MRPHVLFIDEPL-YHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVF 312 (723)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~----------~~P~lLlLDEPT-sgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~ 312 (723)
.+..||||||||++||++|+ .+|++||||||| ++||+.....+.+.|+++ .|.+||+++|++ ...
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~--~~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKD--HDP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECch--hch
Confidence 45789999999999999887 599999999998 789999999999999998 588999999996 355
Q ss_pred hcCCEEEEEeC-CeE
Q 004932 313 GLFDRICLLSN-GNT 326 (723)
Q Consensus 313 ~~~D~v~vL~~-G~i 326 (723)
..||++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 78999999985 554
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.1e-11 Score=143.20 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=64.6
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCC
Q 004932 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (723)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (723)
..+|+|++|++.|++++ .+|+++|+|||++|+|+.....+.. +++.+.+.|.++|++||++. .....+|+..++ ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e-l~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE-LKALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH-HHHHHhcCCCeE-EE
Confidence 47999999999999998 8999999999999999999988864 67778888899999999853 344445555443 55
Q ss_pred eEEEE
Q 004932 325 NTLFF 329 (723)
Q Consensus 325 ~iv~~ 329 (723)
.+.+.
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 65553
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.8e-11 Score=126.00 Aligned_cols=75 Identities=21% Similarity=0.224 Sum_probs=61.9
Q ss_pred CCCCHHH--------HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH-HHHHHHHHHHcCCEEEEEEeCChHHHHhcCC
Q 004932 246 KGLPCGE--------RRRVRIARELVMRPHVLFIDEPLYHLDSVSALL-MMVTLKKLASTGCTLLFTINQSSTEVFGLFD 316 (723)
Q Consensus 246 ~~LSGGe--------rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~-i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D 316 (723)
..+|||| +||+++||++..+++|.+| ||+.+|+.+... ++ +..+...+.|.|+.+|... ....+|
T Consensus 128 ~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~~p 201 (249)
T cd01128 128 KILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRIFP 201 (249)
T ss_pred CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCCCC
Confidence 4589999 9999999999999999999 999999655544 54 5565556778888888763 467899
Q ss_pred EEEEEeCCeE
Q 004932 317 RICLLSNGNT 326 (723)
Q Consensus 317 ~v~vL~~G~i 326 (723)
.|.+|+.|++
T Consensus 202 aI~vl~s~sr 211 (249)
T cd01128 202 AIDILKSGTR 211 (249)
T ss_pred eEEEcCCCCc
Confidence 9999999987
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.4e-10 Score=127.76 Aligned_cols=171 Identities=18% Similarity=0.182 Sum_probs=109.2
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC---C------C----CCceEEEEc
Q 004932 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS---E------M----PYGSYGFVE 188 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~---~------~----~~~~~~yv~ 188 (723)
+.++++++ +.+.+|+.++|+|+||+|||||+++|+|..+++. |.|.+.|+.. . . ..+.+.++.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~---gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~ 220 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADL---NVIALIGERGREVREFIERDLGPEGLKRSIVVVA 220 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCe---EEEEEEecCCccHHHHHHhhcChhhhcCeEEEEE
Confidence 34689999 9999999999999999999999999999988864 9999876532 1 0 124577776
Q ss_pred CCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch--HhhhhhcCCCCCCCCCHHHHHHHHHH-HHHhhC
Q 004932 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD--YANKLIGGHCYMKGLPCGERRRVRIA-RELVMR 265 (723)
Q Consensus 189 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~ig~~~~~~~LSGGerqRv~IA-~aL~~~ 265 (723)
+.+.-. -.+....+.+ -.+.|.+..-|..- ..| .|+ |.+-| |++.
T Consensus 221 ~~~~~~---~~r~~~~~~a------------~~iAEyfr~~g~~Vll~~D----------slt-----r~A~A~rEis-- 268 (438)
T PRK07721 221 TSDQPA---LMRIKGAYTA------------TAIAEYFRDQGLNVMLMMD----------SVT-----RVAMAQREIG-- 268 (438)
T ss_pred CCCCCH---HHHHHHHHHH------------HHHHHHHHHCCCcEEEEEe----------ChH-----HHHHHHHHHH--
Confidence 544311 0111111110 01112222222110 001 010 00000 1111
Q ss_pred CcEEEEeCC--CCCCCHHHHHHHHHHHHHHHH--cCC-----EEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 266 PHVLFIDEP--LYHLDSVSALLMMVTLKKLAS--TGC-----TLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 266 P~lLlLDEP--TsgLD~~~~~~i~~~L~~l~~--~g~-----tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
+.+.|| |+|+|+.....+.++++++.+ +|. ||++..|+.. ..+||++..+.+|+++..++..+
T Consensus 269 ---l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~---e~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 269 ---LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMN---EPIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred ---HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCC---chhhhhEEEecCEEEEEeccHHH
Confidence 112353 789999999999999999984 575 8888877764 27899999999999999998754
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.3e-11 Score=120.01 Aligned_cols=79 Identities=14% Similarity=0.136 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCC--CCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 004932 246 KGLPCGERRRVRIARELVMRPHVLFIDEP--LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (723)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~P~lLlLDEP--TsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (723)
..+||+++-+..+++..+.+|+++++||| +.++| ..+.+.+.++.+.|.++|+++|.. .+...+|+|..+.+
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCC
Confidence 36999999999999999999999999995 33444 445677777767789999999973 56678999999999
Q ss_pred CeEEEEe
Q 004932 324 GNTLFFG 330 (723)
Q Consensus 324 G~iv~~G 330 (723)
|++++.-
T Consensus 151 ~~i~~~~ 157 (174)
T PRK13695 151 GRVYELT 157 (174)
T ss_pred cEEEEEc
Confidence 9997763
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.11 E-value=2e-10 Score=117.38 Aligned_cols=134 Identities=18% Similarity=0.176 Sum_probs=86.4
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHH
Q 004932 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (723)
+.+.+|+++..++|++++|.||||+|||||++++++..--.. .| -.+......+++ -+.++..+...|+
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~--~G------~~vpa~~~~i~~---~~~i~~~~~~~d~ 85 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQ--MG------MDVPAKSMRLSL---VDRIFTRIGARDD 85 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHH--cC------CccCccccEecc---ccEEEEecCcccc
Confidence 467889999999999999999999999999999988532100 01 111000011111 1222222222222
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCH--HHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 004932 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC--GERRRVRIARELVMRPHVLFIDEPLYHLDS 280 (723)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSG--GerqRv~IA~aL~~~P~lLlLDEPTsgLD~ 280 (723)
+.. ++|. .|-+|++-....+.+|+++++|||.+|+|+
T Consensus 86 ~~~-----------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~ 124 (218)
T cd03286 86 IMK-----------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGTST 124 (218)
T ss_pred ccc-----------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCc
Confidence 210 1111 234444444444578999999999999999
Q ss_pred HHHHHHHHH-HHHHHHc-CCEEEEEEeCCh
Q 004932 281 VSALLMMVT-LKKLAST-GCTLLFTINQSS 308 (723)
Q Consensus 281 ~~~~~i~~~-L~~l~~~-g~tvi~t~h~~~ 308 (723)
.....+... ++.+.+. +.++|+++|.+.
T Consensus 125 ~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 125 HDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 999988888 7788765 889999888863
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.6e-10 Score=127.31 Aligned_cols=135 Identities=19% Similarity=0.256 Sum_probs=101.3
Q ss_pred CCCCHHHHHHHHHHhcCCCccch-HHHHHHHH------HHHcCCchH-hhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 004932 195 GSLTVREYLYYSALLQLPGFFCQ-RKNVVEDA------IHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMRP 266 (723)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~~-~~~~v~~~------l~~lgL~~~-~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P 266 (723)
..|++.|.+.|...+.+...... .+..+.++ |-.+||.-+ +++ ....|||||.||+-||..+=.+=
T Consensus 427 ~~msi~~~~~f~~~l~l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R------~a~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 427 SEMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYLTLSR------SAGTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred hhccHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcccccc------cCCCcChhHHHHHHHHHHhcccc
Confidence 35678888877666554322111 11122222 334566533 233 23489999999999999998763
Q ss_pred --cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChhHHHH
Q 004932 267 --HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (723)
Q Consensus 267 --~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (723)
=+.+||||+-||-+..-.++++.|++|++.|.|+|++-|++ +....+|+|+=| +.|+||+.|+++++++
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 36799999999999999999999999999999999987774 677899999987 4689999999999875
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-10 Score=122.62 Aligned_cols=141 Identities=14% Similarity=0.166 Sum_probs=94.7
Q ss_pred eeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-CCCCC-ceEEEEcCCCc-cCCCCCHHHHHHH
Q 004932 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPY-GSYGFVERETT-LIGSLTVREYLYY 205 (723)
Q Consensus 129 vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~-~~~~~-~~~~yv~Q~~~-l~~~lTV~E~l~~ 205 (723)
+++.+++|+.++|.||+|||||||+++|++.+++.. |.+.+.... ..... ..+.++.+... -..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~---~iv~ied~~El~~~~~~~~~l~~~~~~~~~~---------- 203 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDE---RIITIEDTREIFLPHPNYVHLFYSKGGQGLA---------- 203 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccc---cEEEEcCccccCCCCCCEEEEEecCCCCCcC----------
Confidence 556788999999999999999999999999998764 666665321 11100 11111111000 000
Q ss_pred HHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 004932 206 SALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285 (723)
Q Consensus 206 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~ 285 (723)
.++- .-.++.+|-.+|+++++|||.+ .+
T Consensus 204 -----------------------------------------~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e 231 (308)
T TIGR02788 204 -----------------------------------------KVTP----KDLLQSCLRMRPDRIILGELRG-------DE 231 (308)
T ss_pred -----------------------------------------ccCH----HHHHHHHhcCCCCeEEEeccCC-------HH
Confidence 1111 1134556778999999999996 34
Q ss_pred HHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 286 MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 286 i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
+.+.++.+...+.+++.|+|..+ +.+..||+..|..|++...|.+.+.+
T Consensus 232 ~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 232 AFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 56677777643346688888875 55669999999999998888877765
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.6e-10 Score=116.22 Aligned_cols=63 Identities=25% Similarity=0.382 Sum_probs=53.9
Q ss_pred CCCCHHHHHHHHHHHHHhhCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 004932 246 KGLPCGERRRVRIARELVMRP---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (723)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~P---~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (723)
..+|.|+||.+.|+..|...+ .++++|||-++|+|..+..+++.|+.+.+.+.-+|+|||.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 457999999999999998877 899999999999999999999999888776788999999874
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.9e-10 Score=123.25 Aligned_cols=169 Identities=16% Similarity=0.118 Sum_probs=116.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (723)
+.-++++..+. .+.++++++ +.+.+|+.++|+|+||+|||||+++|+|..+++. |.|.+.|+.
T Consensus 131 ~~r~~i~~~l~----TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~---gvI~~iGer--------- 193 (432)
T PRK06793 131 FEREEITDVFE----TGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADI---NVISLVGER--------- 193 (432)
T ss_pred hheechhhccC----CCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCe---EEEEeCCCC---------
Confidence 44555555443 234678885 9999999999999999999999999999988763 777766642
Q ss_pred EEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHh--
Q 004932 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV-- 263 (723)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~-- 263 (723)
..+|+|.+... +..-++... ..+ ....+-|.|+|+|++.+.+.+
T Consensus 194 ----------g~ev~e~~~~~-------------------l~~~gl~~t--vvv---~~tsd~s~~~r~ra~~~a~~iAE 239 (432)
T PRK06793 194 ----------GREVKDFIRKE-------------------LGEEGMRKS--VVV---VATSDESHLMQLRAAKLATSIAE 239 (432)
T ss_pred ----------cccHHHHHHHH-------------------hhhccccee--EEE---EECCCCCHHHHHHHHHHHHHHHH
Confidence 13666655321 111122110 001 123578999999999998888
Q ss_pred -----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004932 264 -----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 264 -----~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
.++-+|++|+||++.|+. .+|-..+.+....|.+..+.+|++ .+ ++|.-...+|.|...+..
T Consensus 240 yfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~--~L---~ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 240 YFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMK--KL---LERSGKTQKGSITGIYTV 306 (432)
T ss_pred HHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccch--hH---HHHhccCCCcceEEEEEE
Confidence 789999999999999996 555556666654577877766753 33 444444578888766654
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=6e-10 Score=136.51 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=68.7
Q ss_pred CCCCCCCHHHHH------HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCC
Q 004932 243 CYMKGLPCGERR------RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 316 (723)
Q Consensus 243 ~~~~~LSGGerq------Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D 316 (723)
..+..|||||++ |++||++++.+|+++|+||||+|||+..+..+.+.|..+.+.+.+||+++|++ ++...||
T Consensus 784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d 861 (880)
T PRK03918 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAAD 861 (880)
T ss_pred CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCC
Confidence 356789999999 55566678899999999999999999999999999999887788899989986 3678999
Q ss_pred EEEEEe
Q 004932 317 RICLLS 322 (723)
Q Consensus 317 ~v~vL~ 322 (723)
++++|.
T Consensus 862 ~~~~l~ 867 (880)
T PRK03918 862 YVIRVS 867 (880)
T ss_pred eEEEEE
Confidence 999997
|
|
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.4e-09 Score=127.99 Aligned_cols=70 Identities=20% Similarity=0.185 Sum_probs=60.9
Q ss_pred hhCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHH--------HhcCCEEEEEeCCeEEEEeCh
Q 004932 263 VMRPHVLFIDEPLYHL-DSVSALLMMVTLKKLASTGCTLLFTINQSSTEV--------FGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgL-D~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i--------~~~~D~v~vL~~G~iv~~G~~ 332 (723)
..+|+++++|||+.+| |+..+..+.+.++.+++.|.++++++|++.... .+.||++++|.+|++...|..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 5799999999999999 799999999999999998999999999985322 368999999999998776643
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-09 Score=104.08 Aligned_cols=64 Identities=13% Similarity=0.054 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHH
Q 004932 247 GLPCGERRRVRIARELVMRPHVLFIDEPLY----------HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310 (723)
Q Consensus 247 ~LSGGerqRv~IA~aL~~~P~lLlLDEPTs----------gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~ 310 (723)
..+.++.++...+++...+|+++++||+++ ++|......+.+++....+.+.|+|+++|.+...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 445666778888999999999999999994 4555556666666666666799999999987544
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK15066 inner membrane transport permease; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-07 Score=97.34 Aligned_cols=243 Identities=16% Similarity=0.115 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHhcCC-CCChHHH----HHHHHHHHHHHHHHHHHHHhhHH
Q 004932 431 SATRVAVLTWRSLLIMSREWKY-YWLRLILCMILTLCVGTVFSGL-GHSLSSV----VTRVAAIFVFVSFNSLLNIAGVP 504 (723)
Q Consensus 431 ~~~Q~~~l~~R~~~~~~Rd~~~-~~~r~~~~i~~al~~G~~f~~l-~~~~~~i----~~r~g~lff~~~~~~~~~~~~~~ 504 (723)
.++-++.+.+|..+...||+.. ...-+++.++..+++|.++-.. +. ..+. .--.|.+-+.....+.+. ...
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~-~~~~~y~~fl~pGll~~~~~~~~~~~--~~~ 82 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGE-MGGFSYMQFIVPGLIMMSVITNSYSN--VAS 82 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCC-CCCCcHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 3667889999999999999854 3334455556667777665321 11 0111 111122222222111111 112
Q ss_pred HHHhhHHH-HHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 004932 505 ALMKEIKT-YASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLV 583 (723)
Q Consensus 505 ~~~~er~v-~~rE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y~m~Gl~~~~~~F~~f~l~~~~~~~~~~s~~~~ 583 (723)
.+..++.. ..++-...--+...+.+++++...-..++..++..++.+...|.+.. ....++..+++...+....+.+
T Consensus 83 ~i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~ 160 (257)
T PRK15066 83 SFFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLI 160 (257)
T ss_pred HHHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 22233311 01111122346778889999988766666665555555544466643 2222233333333333445888
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCcCCCCCcccccHHHH
Q 004932 584 VASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISGYQA 663 (723)
Q Consensus 584 i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~w~~yiSp~~Ya~~al~~nef~~~~~~~~~~~~~~G~~~ 663 (723)
++.+.++......+.+.+..+++..||.+.|.+.+|+ |.+|+.+++|++|..|++=..-
T Consensus 161 ~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~--~l~~i~~~nPlt~~v~~~R~~~------------------- 219 (257)
T PRK15066 161 NAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPP--FWQGVSKLNPIVYMVNAFRYGF------------------- 219 (257)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChH--HHHHHHHHCcHHHHHHHHHHHH-------------------
Confidence 8888898888888888889999999999999999996 6667999999999998764221
Q ss_pred HhhhcCccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 004932 664 LQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKK 705 (723)
Q Consensus 664 L~~~~~~~~~~~~~w~~~~iL~~~~~~~~~l~~i~L~~~~~~ 705 (723)
+|. .....|.++++++++.+++.+++....|++++-
T Consensus 220 ----~g~--~~~~~~~~l~~l~~~~~v~~~la~~~~~r~~~~ 255 (257)
T PRK15066 220 ----LGI--SDVPLWLAFAVLLVFIVVLYLLAWYLLERGRGL 255 (257)
T ss_pred ----cCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 111 112357888999999998888888887765543
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-09 Score=135.35 Aligned_cols=80 Identities=24% Similarity=0.169 Sum_probs=70.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhh--------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhc
Q 004932 243 CYMKGLPCGERRRVRIARELVM--------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 314 (723)
Q Consensus 243 ~~~~~LSGGerqRv~IA~aL~~--------~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~ 314 (723)
..++.|||||++|++||++|+. +|++||+||||++||+.+...+++.|..+++.|++|++++|.+ ....++
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~-~l~~~i 1023 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE-AMKERI 1023 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH-HHHHhc
Confidence 3567999999999999999996 8999999999999999999999999999998899999988865 355567
Q ss_pred CCEEEEEeC
Q 004932 315 FDRICLLSN 323 (723)
Q Consensus 315 ~D~v~vL~~ 323 (723)
-.+|.|-+.
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 777777764
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-08 Score=98.85 Aligned_cols=64 Identities=17% Similarity=0.296 Sum_probs=53.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 004932 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (723)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (723)
..+..|.||-=---+.+. ..+--+.|||||-++|.+.-+..++..|+++++.|.-+|+.||.|.
T Consensus 126 sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 126 SLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred chhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 345679998755444444 3567899999999999999999999999999999999999999985
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.8e-09 Score=133.08 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=61.8
Q ss_pred CCCCCCHHHHH------HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCCEEEEEEeCChHHHH
Q 004932 244 YMKGLPCGERR------RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-----TGCTLLFTINQSSTEVF 312 (723)
Q Consensus 244 ~~~~LSGGerq------Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-----~g~tvi~t~h~~~~~i~ 312 (723)
.+..||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|..+.. .|.+||+++|++ ..+.
T Consensus 1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~-~~~~ 1274 (1311)
T TIGR00606 1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDE-DFVE 1274 (1311)
T ss_pred CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCH-HHHH
Confidence 34579999999 99999999999999999999999999999999999998742 378999988876 4666
Q ss_pred hcC
Q 004932 313 GLF 315 (723)
Q Consensus 313 ~~~ 315 (723)
.+|
T Consensus 1275 ~~~ 1277 (1311)
T TIGR00606 1275 LLG 1277 (1311)
T ss_pred HHh
Confidence 664
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.9e-09 Score=128.69 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=66.0
Q ss_pred CCCCCCHHHHHHHHH------HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-Hc-C-CEEEEEEeCChHHHHhc
Q 004932 244 YMKGLPCGERRRVRI------ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-ST-G-CTLLFTINQSSTEVFGL 314 (723)
Q Consensus 244 ~~~~LSGGerqRv~I------A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~-~~-g-~tvi~t~h~~~~~i~~~ 314 (723)
.+..||||||+|++| |++++.+|++++|||||+|||+.....+.+.|+... .. | .++|+++|++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 467899999999975 589999999999999999999999999999998654 33 3 47888888873 4578
Q ss_pred CCEEEEEe
Q 004932 315 FDRICLLS 322 (723)
Q Consensus 315 ~D~v~vL~ 322 (723)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.8e-08 Score=101.05 Aligned_cols=161 Identities=17% Similarity=0.186 Sum_probs=95.7
Q ss_pred eece-eeEEeCCcEEEEECCCCCcHHHHHHHHH-cCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHH
Q 004932 126 VKSS-NGYALPGTMTVIMGPAKSGKSTLLRAIA-GRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (723)
Q Consensus 126 L~~v-s~~v~~Ge~~aIlGpsGsGKSTLL~~L~-G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (723)
|+.+ .+=+++|.++.|.|++|+|||||...++ +....+ + .+.|+.-+. +..+.+
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g----~--------------~~~y~~~e~------~~~~~~ 69 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQG----K--------------KVYVITTEN------TSKSYL 69 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCC----C--------------EEEEEEcCC------CHHHHH
Confidence 4443 4557899999999999999999999875 222211 2 233433321 233332
Q ss_pred HHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhh--CCcEEEEeCCCCC---C
Q 004932 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM--RPHVLFIDEPLYH---L 278 (723)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~--~P~lLlLDEPTsg---L 278 (723)
.-...+... +++.+. -+.....+..+. .....|.++++.+.....++. +|+++++||||+. +
T Consensus 70 ~~~~~~g~~---------~~~~~~-~g~l~i~~~~~~---~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~ 136 (234)
T PRK06067 70 KQMESVKID---------ISDFFL-WGYLRIFPLNTE---GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYA 136 (234)
T ss_pred HHHHHCCCC---------hhHHHh-CCCceEEecccc---ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcC
Confidence 211111111 001000 011111111111 112356788999999999997 9999999999965 4
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEEeCChH------HHHhcCCEEEEEeC
Q 004932 279 DSVSALLMMVTLKKLASTGCTLLFTINQSST------EVFGLFDRICLLSN 323 (723)
Q Consensus 279 D~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~------~i~~~~D~v~vL~~ 323 (723)
|......+++.++.++++|.|+++++|++.. .+..++|-++.|+.
T Consensus 137 ~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 137 EEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 4555556666677777789999998887642 15667888887863
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.7e-09 Score=130.67 Aligned_cols=76 Identities=14% Similarity=0.168 Sum_probs=66.3
Q ss_pred CCCCCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEE
Q 004932 244 YMKGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319 (723)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~----~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~ 319 (723)
.+..||||||+|++||++++ .+|+++||||||+|||+.....+.++|+.+++ +.++|+++|++. ....||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhhHe
Confidence 55789999999999999985 57799999999999999999999999999875 477888899974 357899998
Q ss_pred EEe
Q 004932 320 LLS 322 (723)
Q Consensus 320 vL~ 322 (723)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 664
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.77 E-value=3e-08 Score=100.12 Aligned_cols=57 Identities=25% Similarity=0.286 Sum_probs=42.7
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 004932 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (723)
Q Consensus 257 ~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (723)
+|+++|..+|+++++|||. |..+...++ +.+..|..++.|+|.++ +.+..||++.|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4778899999999999996 665443333 44567999999999985 346688887664
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-08 Score=111.23 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=65.7
Q ss_pred CCCCCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhc
Q 004932 244 YMKGLPCGERRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 314 (723)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~---------~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~ 314 (723)
....+|.||+|+++||+.|+ .+|+||+||||+++||+..+..+++.|.++ +..+++|+|++. .+...
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~ 345 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADL 345 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhh
Confidence 33569999999999999986 699999999999999999999999988764 346788888764 44444
Q ss_pred C--CEEEEEeCCeE
Q 004932 315 F--DRICLLSNGNT 326 (723)
Q Consensus 315 ~--D~v~vL~~G~i 326 (723)
+ ++++.+++|++
T Consensus 346 ~~~~~i~~v~~G~i 359 (361)
T PRK00064 346 LENAKIFHVEQGKI 359 (361)
T ss_pred hccCcEEEEeCCEE
Confidence 3 57999999987
|
|
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.4e-08 Score=101.71 Aligned_cols=135 Identities=24% Similarity=0.396 Sum_probs=81.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC-EeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCc
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G-~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 214 (723)
|++..|+||+|+|||||+-.++=-... |.=.+.+ ... .....+.|+.=++..
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~-----G~~~~g~~~~~-~~~~~Vlyi~~Ed~~--------------------- 53 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMAL-----GKNLFGGGLKV-TEPGRVVYLSAEDPR--------------------- 53 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhc-----CccccCCcccc-CCCceEEEEECCCCH---------------------
Confidence 678999999999999998887643221 2211111 111 111234454432211
Q ss_pred cchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHH----------------HHhhCCcEEEEeCCCC--
Q 004932 215 FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR----------------ELVMRPHVLFIDEPLY-- 276 (723)
Q Consensus 215 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~----------------aL~~~P~lLlLDEPTs-- 276 (723)
....+++..+...+++.+..++.. ..+|+.|++.+++ ....+|+++++| |++
T Consensus 54 -~~i~~Rl~~i~~~~~~~~~~~rl~--------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~ 123 (239)
T cd01125 54 -EEIHRRLEAILQHLEPDDAGDRLF--------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSF 123 (239)
T ss_pred -HHHHHHHHHHHhhcCCcCcccceE--------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHh
Confidence 012344555566665544433322 1244555554443 335799999999 765
Q ss_pred ----CCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCC
Q 004932 277 ----HLDSVSALLMMVTLKKLAS-TGCTLLFTINQS 307 (723)
Q Consensus 277 ----gLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~ 307 (723)
.+|+.....+++.|+++++ .|.+|++++|..
T Consensus 124 ~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 124 HGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 4799999999999999985 588999876655
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.1e-08 Score=113.75 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=45.0
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC
Q 004932 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE 178 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~ 178 (723)
..+|++||+.+++||+++|+|||||||||||+ +|+..|+. .|+|.++|++..
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~s--Gg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSE--GYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCC--CCEEEECCEECC
Confidence 46899999999999999999999999999999 67777653 248999998753
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-08 Score=126.37 Aligned_cols=77 Identities=14% Similarity=0.166 Sum_probs=67.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEE
Q 004932 244 YMKGLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319 (723)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~~----~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~ 319 (723)
.+..||||||++++||++++. +|+++|||||++|||+.....+.++|+.+++. ..+|+++|++. ....||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~-~~~i~~t~~~~--~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGE-AQFIVVSLRSP--MIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCC-CeEEEEECcHH--HHHhcceeE
Confidence 456899999999999999985 67999999999999999999999999998654 66788889873 568999999
Q ss_pred EEeC
Q 004932 320 LLSN 323 (723)
Q Consensus 320 vL~~ 323 (723)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 8753
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.68 E-value=9e-09 Score=117.65 Aligned_cols=164 Identities=18% Similarity=0.201 Sum_probs=99.8
Q ss_pred eece-eeEEeCCcEEEEECCCCCcHHHHHHHH--HcCCCCCCCceeEEEECCEeCCC----CCceEEEEcCCCccCCCCC
Q 004932 126 VKSS-NGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSEM----PYGSYGFVERETTLIGSLT 198 (723)
Q Consensus 126 L~~v-s~~v~~Ge~~aIlGpsGsGKSTLL~~L--~G~~~~~~~~~G~I~i~G~~~~~----~~~~~~yv~Q~~~l~~~lT 198 (723)
|+.+ .+=+.+|..+.|.|++|||||||..-. .|....+. .-+.+....... ..+..|+-.++..--
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge---~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~---- 82 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDE---PGVFVTFEESPQDIIKNARSFGWDLQKLVDE---- 82 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCC---CEEEEEEecCHHHHHHHHHHcCCCHHHHhhc----
Confidence 4443 456778999999999999999999866 45443222 344444321100 001122211100000
Q ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHH--HHHhhCCcEEEEeCCCC
Q 004932 199 VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA--RELVMRPHVLFIDEPLY 276 (723)
Q Consensus 199 V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA--~aL~~~P~lLlLDEPTs 276 (723)
+++.+ ... ........+++.+++.+..++... .+|+|++|||.|+ .+|...|+..
T Consensus 83 --g~l~~-----~~~---~~~~~~~~~~~~~~l~~~l~~i~~------~ls~g~~qRVvIDSl~aL~~~~~~~------- 139 (484)
T TIGR02655 83 --GKLFI-----LDA---SPDPEGQDVVGGFDLSALIERINY------AIRKYKAKRVSIDSVTAVFQQYDAV------- 139 (484)
T ss_pred --CceEE-----Eec---CchhccccccccCCHHHHHHHHHH------HHHHhCCcEEEEeehhHhhhhcCch-------
Confidence 00000 000 000111224556677777777654 8999999999999 6666666543
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHH-------H-HhcCCEEEEEe
Q 004932 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE-------V-FGLFDRICLLS 322 (723)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~-------i-~~~~D~v~vL~ 322 (723)
...+..+.++++.+++.|.|+|+++|++... + ..++|.|+.|+
T Consensus 140 ---~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 ---SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ---HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 5677889999999998999999999986421 2 56899999997
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.1e-08 Score=120.47 Aligned_cols=78 Identities=24% Similarity=0.341 Sum_probs=66.5
Q ss_pred CCCCCCHHHHH------HHHHHHHHhhC-----C-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC-EEEEEEeCChHH
Q 004932 244 YMKGLPCGERR------RVRIARELVMR-----P-HVLFIDEPLYHLDSVSALLMMVTLKKLASTGC-TLLFTINQSSTE 310 (723)
Q Consensus 244 ~~~~LSGGerq------Rv~IA~aL~~~-----P-~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~-tvi~t~h~~~~~ 310 (723)
.+..||||||+ |++||++++.+ | +++|+||||++||+.....+.+.|+.+...|. +||+++|++.
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~-- 855 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE-- 855 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--
Confidence 35689999999 99999999864 3 67999999999999999999999999987664 7888888873
Q ss_pred HHhcCCEEEEEeC
Q 004932 311 VFGLFDRICLLSN 323 (723)
Q Consensus 311 i~~~~D~v~vL~~ 323 (723)
....||+++.|..
T Consensus 856 ~~~~ad~~~~~~~ 868 (880)
T PRK02224 856 LVGAADDLVRVEK 868 (880)
T ss_pred HHHhcCeeEEeec
Confidence 3467999999964
|
|
| >COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.3e-06 Score=89.40 Aligned_cols=168 Identities=26% Similarity=0.315 Sum_probs=121.3
Q ss_pred HHHHHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Q 004932 510 IKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNFFMCLLVNEGLMLVVA-SIW 588 (723)
Q Consensus 510 r~v~~rE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y~m~Gl~~~~~~F~~f~l~~~~~~~~~~s~~~~i~-~~~ 588 (723)
...+.|=..+...+ ..+++++.+...-...+...+...++.+..|. .....+..+...+.+..+...++|.+++ .+.
T Consensus 117 ~g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 194 (286)
T COG0842 117 FGTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGV-PFLGSLLLLLLLLLLLLLATVALGLLLSTFAK 194 (286)
T ss_pred hCcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444454444 55667777776666666666666666666673 3334556666666777777788888666 366
Q ss_pred CCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCcCCCCCcccccHHHHHhhhc
Q 004932 589 KDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRTISGYQALQSAY 668 (723)
Q Consensus 589 ~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~w~~yiSp~~Ya~~al~~nef~~~~~~~~~~~~~~G~~~L~~~~ 668 (723)
++...+..++..+..++++++|.+.|.+.+|. |..|+.++.|.+|+.+++-.....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~--~~~~i~~~~P~t~~~~~~~~~~~~~--------------------- 251 (286)
T COG0842 195 SQLQCASAVGNLLILPLGFLSGVFFPLELLPA--WLQGISYINPLTYAIDALRYVYLGG--------------------- 251 (286)
T ss_pred hHHHHHHHHHHHHHHHHHHHccccCchhhhHH--HHHHHHHHccHHHHHHHHHHHHhCC---------------------
Confidence 77888888888999999999999999999996 7777999999999998876543321
Q ss_pred CccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 004932 669 DISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKK 705 (723)
Q Consensus 669 ~~~~~~~~~w~~~~iL~~~~~~~~~l~~i~L~~~~~~ 705 (723)
. .....|.++++++++.+++.+++.+.+|++.+.
T Consensus 252 -~--~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 252 -W--RNDGIWISLLILLLFAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred -C--chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1 112278889999999999999999998877653
|
|
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.9e-07 Score=109.23 Aligned_cols=69 Identities=23% Similarity=0.313 Sum_probs=54.0
Q ss_pred HHHHHhhCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHh--cCCEEEEEeCCeEE
Q 004932 258 IARELVMRPHVLFIDEPLYHL-DSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG--LFDRICLLSNGNTL 327 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgL-D~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~--~~D~v~vL~~G~iv 327 (723)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.++++++|++. ++.+ .++.++-..+.++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~-d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLS-DAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHhhCchHHHHHHcCCccee
Confidence 677888999999999999999 799999999999999988999999888875 4443 23333333344443
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-06 Score=79.91 Aligned_cols=118 Identities=26% Similarity=0.337 Sum_probs=77.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCc
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 214 (723)
+|..+.|.||+|+||||+++.|++...... .+-+.++....... ......
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~----------------~~~~~~------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEE----------------VLDQLL------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEcccc----------------CHHHHH------------
Confidence 367899999999999999999999876531 12444443321100 000000
Q ss_pred cchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH------
Q 004932 215 FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV------ 288 (723)
Q Consensus 215 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~------ 288 (723)
.... ........+++..+..++++--.+|.++++||+..-.+.........
T Consensus 51 -----------------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~ 107 (148)
T smart00382 51 -----------------LIIV------GGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRL 107 (148)
T ss_pred -----------------hhhh------hccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHH
Confidence 0000 11223677888888888888888899999999999999998887765
Q ss_pred HHHHHHHcCCEEEEEEe
Q 004932 289 TLKKLASTGCTLLFTIN 305 (723)
Q Consensus 289 ~L~~l~~~g~tvi~t~h 305 (723)
........+..+|+++|
T Consensus 108 ~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 108 LLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHhcCCCEEEEEeC
Confidence 22333345678888777
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-07 Score=105.96 Aligned_cols=151 Identities=15% Similarity=0.164 Sum_probs=93.0
Q ss_pred eeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHH
Q 004932 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLY 204 (723)
Q Consensus 125 iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~ 204 (723)
++++.+..+..|++++++||||+||||++..|++.+.... |. +.++++.+|. ...++.|+|.
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~---G~------------~kV~LI~~Dt---~RigA~EQLr 306 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRH---GA------------SKVALLTTDS---YRIGGHEQLR 306 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhc---CC------------CeEEEEeCCc---cchhHHHHHH
Confidence 4566777788899999999999999999999999764431 31 2467777765 3578999998
Q ss_pred HHHHhc-CCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHH-HHHHHHHHhhCC-----cEEEEeCCCCC
Q 004932 205 YSALLQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR-RVRIARELVMRP-----HVLFIDEPLYH 277 (723)
Q Consensus 205 ~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq-Rv~IA~aL~~~P-----~lLlLDEPTsg 277 (723)
+.+... .+... .....+...+..++.+....++. ....+++. .+.-..+++.++ .+|+||.++.+
T Consensus 307 ~~AeilGVpv~~--~~~~~Dl~~aL~~L~d~d~VLID------TaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~ 378 (484)
T PRK06995 307 IYGKILGVPVHA--VKDAADLRLALSELRNKHIVLID------TIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG 378 (484)
T ss_pred HHHHHhCCCeec--cCCchhHHHHHHhccCCCeEEeC------CCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH
Confidence 765542 33211 11223344455666665555553 22222322 234444455554 68999999887
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEEeCC
Q 004932 278 LDSVSALLMMVTLKKLASTGCTLLFTINQS 307 (723)
Q Consensus 278 LD~~~~~~i~~~L~~l~~~g~tvi~t~h~~ 307 (723)
..+.+.++.....+.+-++.++-+
T Consensus 379 ------~~l~~i~~~f~~~~~~g~IlTKlD 402 (484)
T PRK06995 379 ------DTLNEVVQAYRGPGLAGCILTKLD 402 (484)
T ss_pred ------HHHHHHHHHhccCCCCEEEEeCCC
Confidence 344555555555555544445544
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.51 E-value=9e-07 Score=99.37 Aligned_cols=173 Identities=16% Similarity=0.109 Sum_probs=100.4
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------------CCceEEEEc
Q 004932 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-------------PYGSYGFVE 188 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~-------------~~~~~~yv~ 188 (723)
+.++++++ +.+.+||.++|+|+||+|||||+++|+|..+++. |.+...|+..+. ..+.+.++.
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~---~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~ 225 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADV---NVIALIGERGREVREFIEHDLGEEGLKRSVVVVA 225 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCE---EEEEEEeecchHHHHHHHHHhcccccceEEEEEE
Confidence 34689999 9999999999999999999999999999987763 666655542110 001122222
Q ss_pred CCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCH-HHHHHHHHHHHHhhCCc
Q 004932 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC-GERRRVRIARELVMRPH 267 (723)
Q Consensus 189 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSG-GerqRv~IA~aL~~~P~ 267 (723)
+.+. +..+-. + . ....-.+.|.+...|-.-+ + ..-.|+- -|-+| ++.
T Consensus 226 ~~d~-----~p~~r~------~--~--~~~a~t~AE~frd~G~~Vl----l----~~DslTr~A~A~R-----Eis---- 273 (440)
T TIGR01026 226 TSDQ-----SPLLRL------K--G--AYVATAIAEYFRDQGKDVL----L----LMDSVTRFAMAQR-----EIG---- 273 (440)
T ss_pred CCCC-----CHHHHH------H--H--HHHHHHHHHHHHHCCCCEE----E----EEeChHHHHHHHH-----HHH----
Confidence 2111 010000 0 0 0011112233333332100 0 0011110 01111 111
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHHcCC-------EEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 268 VLFIDEP--LYHLDSVSALLMMVTLKKLASTGC-------TLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 268 lLlLDEP--TsgLD~~~~~~i~~~L~~l~~~g~-------tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
+.+.|| +.|+|+.....+-+++.+....+. ||++..|+. ...++|++.-+.+|+++...+..+
T Consensus 274 -l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~---~dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 274 -LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDM---NEPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred -HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCC---CcchhhhhccccceEEEEecchhh
Confidence 234575 559999999999999999876555 555544443 234689999999999999987655
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.8e-07 Score=92.07 Aligned_cols=79 Identities=20% Similarity=0.209 Sum_probs=56.1
Q ss_pred eeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CCC-CceEEEEcC--CCccCCCCCHHH
Q 004932 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EMP-YGSYGFVER--ETTLIGSLTVRE 201 (723)
Q Consensus 126 L~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~-~~~-~~~~~yv~Q--~~~l~~~lTV~E 201 (723)
.+=+.+.+++|+.++|+||||||||||+++|+|+++++. |.|.+.+... ... ...++++.| ++...+..|+.+
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~---~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDE---RIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCC---CEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHH
Confidence 333445677899999999999999999999999998764 8999977431 111 233455444 344566778888
Q ss_pred HHHHHH
Q 004932 202 YLYYSA 207 (723)
Q Consensus 202 ~l~~~~ 207 (723)
.+....
T Consensus 92 ~l~~~l 97 (186)
T cd01130 92 LLRSAL 97 (186)
T ss_pred HHHHHh
Confidence 776544
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.4e-06 Score=95.38 Aligned_cols=56 Identities=25% Similarity=0.277 Sum_probs=41.9
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE
Q 004932 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (723)
Q Consensus 257 ~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (723)
+++++|-.+|+++++||+. |+.++...++ .+..|.+|+.|+|..+ .....+|++-|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~--~~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNS--AAQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCC--HHHHHHHHHHh
Confidence 3567888999999999997 8888865444 3567999999888864 33556666544
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.5e-07 Score=103.14 Aligned_cols=169 Identities=14% Similarity=0.100 Sum_probs=109.0
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----------CCCceEEEEcCC
Q 004932 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-----------MPYGSYGFVERE 190 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~-----------~~~~~~~yv~Q~ 190 (723)
+.++++++ +.+.+||.++|+|+||+|||||+++|+|..+++...-|.|-.+|.+.. ..+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 45799999 999999999999999999999999999998776323355555554321 122358999999
Q ss_pred CccCCCCCHHHHHHHHHHhcCC-Cc-c---chHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 004932 191 TTLIGSLTVREYLYYSALLQLP-GF-F---CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (723)
Q Consensus 191 ~~l~~~lTV~E~l~~~~~~~~~-~~-~---~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~ 265 (723)
...+..+++.|++.+.+..... +. . -+.-.+..++.+++++
T Consensus 221 ~s~~~rl~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a~A~REisl---------------------------------- 266 (434)
T PRK07196 221 ESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIAL---------------------------------- 266 (434)
T ss_pred CChhhhHHHHHHHHHHHHHhhhccCCEEEeecchhHHHhhhhHHHH----------------------------------
Confidence 9999999999999776653211 10 0 0011111222222221
Q ss_pred CcEEEEeCC--CCCCCHHHHHHHHHHHHHHH--H-cC-CEEEEEEeCChHHHHh-cCCEEEEEeCCeEEEE
Q 004932 266 PHVLFIDEP--LYHLDSVSALLMMVTLKKLA--S-TG-CTLLFTINQSSTEVFG-LFDRICLLSNGNTLFF 329 (723)
Q Consensus 266 P~lLlLDEP--TsgLD~~~~~~i~~~L~~l~--~-~g-~tvi~t~h~~~~~i~~-~~D~v~vL~~G~iv~~ 329 (723)
.+.|| +.|--+..-..+-+++.+.- + .| .|.+.++.-+.+++-+ ++|.+.=+-+|+|+-.
T Consensus 267 ----~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLs 333 (434)
T PRK07196 267 ----SLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLS 333 (434)
T ss_pred ----hcCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEc
Confidence 12233 23555666666666666652 1 23 5778777776555433 5777777889999864
|
|
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.44 E-value=3e-07 Score=101.36 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=54.7
Q ss_pred CCCCHHHHHHHHHHHHHhh---------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 004932 246 KGLPCGERRRVRIARELVM---------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (723)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~---------~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (723)
..+|.||+|++.||..|+. +|+||+||||+++||+..+..+++.|+.. |..+++|+|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 3499999999999999999 99999999999999999999999999764 678999888864
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.4e-07 Score=99.53 Aligned_cols=74 Identities=18% Similarity=0.065 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCE
Q 004932 247 GLPCGERRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (723)
Q Consensus 247 ~LSGGerqRv~IA~aL~---------~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (723)
-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|.... . +++|+.++ ...+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q-~~it~t~~----~~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---Q-AIVAGTEA----PPGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---c-EEEEcCCC----CCCCce
Confidence 48999999999999999 8999999999999999999999998886542 2 34443332 357999
Q ss_pred EEEEeCCeEEE
Q 004932 318 ICLLSNGNTLF 328 (723)
Q Consensus 318 v~vL~~G~iv~ 328 (723)
++.+.+|++.-
T Consensus 335 ~~~~~~~~~~~ 345 (349)
T PRK14079 335 TLRIEAGVFTP 345 (349)
T ss_pred EEEEeccEecC
Confidence 99999998753
|
|
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2e-05 Score=95.74 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=43.2
Q ss_pred HHhhCCcEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 004932 261 ELVMRPHVLFIDEPLYHLD-SVSALLMMVTLKKLASTGCTLLFTINQSS 308 (723)
Q Consensus 261 aL~~~P~lLlLDEPTsgLD-~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (723)
.+..+|.++++|||...|| +..+..+.+.++.+++.|..+++++|.+.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 686 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVE 686 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 4556899999999999999 89999999999999988999999888874
|
|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.6e-06 Score=106.75 Aligned_cols=79 Identities=27% Similarity=0.297 Sum_probs=69.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhh------C--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhc
Q 004932 243 CYMKGLPCGERRRVRIARELVM------R--PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 314 (723)
Q Consensus 243 ~~~~~LSGGerqRv~IA~aL~~------~--P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~ 314 (723)
..+..|||||+-.++||.+|+. + -++|||||||..||+.+...+++.|..+...+.+|++++|++ +..+.
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~ 888 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKER 888 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHh
Confidence 3567899999998888877764 5 689999999999999999999999999998899999989985 67889
Q ss_pred CCEEEEEeC
Q 004932 315 FDRICLLSN 323 (723)
Q Consensus 315 ~D~v~vL~~ 323 (723)
+|.++.++.
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 999998863
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.3e-07 Score=91.40 Aligned_cols=112 Identities=15% Similarity=0.168 Sum_probs=63.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHH-hcCCCccc
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSAL-LQLPGFFC 216 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~-~~~~~~~~ 216 (723)
+++|.||||||||||.++|++.+. . |.+.+-+ +++.+ ..++..+....... ...+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~-~----~~~~v~~--------------~D~~~-~~~~~~~~~~~~~~~~~~~~~-- 58 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG-N----PKVVIIS--------------QDSYY-KDLSHEELEERKNNNYDHPDA-- 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-C----CCeEEEE--------------ecccc-cccccccHHHhccCCCCCCCc--
Confidence 589999999999999999999872 1 3333322 22211 11222222211000 011111
Q ss_pred hHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 004932 217 QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280 (723)
Q Consensus 217 ~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~ 280 (723)
...+...+.++.+...+..+. +....|.|++++..+ .+.+|+++|+|+|..+.++
T Consensus 59 ~~~~~~~~~l~~l~~~~~~~~------p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 59 FDFDLLISHLQDLKNGKSVEI------PVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred ccHHHHHHHHHHHHCCCCEec------cccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 122234455555554433322 234778888776555 5678999999999999886
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.3e-07 Score=95.50 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=26.2
Q ss_pred eece-eeEEeCCcEEEEECCCCCcHHHHHHHHH
Q 004932 126 VKSS-NGYALPGTMTVIMGPAKSGKSTLLRAIA 157 (723)
Q Consensus 126 L~~v-s~~v~~Ge~~aIlGpsGsGKSTLL~~L~ 157 (723)
|+.+ .+-+++|++++|.|++|+|||||+..++
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 4443 4567899999999999999999988655
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.2e-06 Score=106.49 Aligned_cols=68 Identities=19% Similarity=0.195 Sum_probs=49.1
Q ss_pred CCCCHHHHHHHHHHHHHhh--CCcEEEEeCC---CCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCE
Q 004932 246 KGLPCGERRRVRIARELVM--RPHVLFIDEP---LYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDR 317 (723)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~--~P~lLlLDEP---TsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~ 317 (723)
.++|.=+.....++..|-. +++++|+||| |+.+|..+ .....++.+.+. |.+++++||.+ ++.+++++
T Consensus 665 ~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 665 SGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred cCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 3677766666666666654 8999999999 88888433 345566666655 57888888884 57777775
|
|
| >TIGR01248 drrC daunorubicin resistance protein C | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.6e-05 Score=76.83 Aligned_cols=129 Identities=13% Similarity=0.050 Sum_probs=92.0
Q ss_pred hhHHHHHhhccCCCcchHHHHHHHHHHHHhHHHHHHHhhhhhhhccccccccHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 004932 508 KEIKTYASEESNMHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFS--LLMYFVLNFFMCLLVNEGLMLVVA 585 (723)
Q Consensus 508 ~er~v~~rE~~~g~Y~~~~y~la~~l~elP~~~i~~~if~~i~Y~m~Gl~~~~~--~F~~f~l~~~~~~~~~~s~~~~i~ 585 (723)
.|+.++.|-+..-. +...++++|++...-..+++.++..++.++ .|.+.+.. ..+.+++...+.......++..++
T Consensus 16 r~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a 93 (152)
T TIGR01248 16 REIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAMA 93 (152)
T ss_pred HHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777776666 588999999999998888888877777754 48887632 222233333334444555666666
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHH
Q 004932 586 SIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLL 641 (723)
Q Consensus 586 ~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~w~~yiSp~~Ya~~al~ 641 (723)
...++.+..+ ....+..++++.+|.+.|.+.+|+ |..|+.+++|++|+.+++=
T Consensus 94 ~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~--wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 94 LRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPD--WAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcH--HHHHHHhhCCccHHHHHHH
Confidence 5556655433 346677788888888899999996 8888999999999999874
|
The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters. |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.26 E-value=2e-06 Score=96.04 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=64.7
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCC-
Q 004932 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA---KSE- 178 (723)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~---~~~- 178 (723)
...+..++++..+.. +..+++.++ .+.+||.++|+||||||||||+++|+++.+++. |.|.+.|+ +..
T Consensus 137 p~~~~r~~v~~~l~T----Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~---gvv~liGergrev~e 208 (450)
T PRK06002 137 PPAMTRARVETGLRT----GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDT---VVIALVGERGREVRE 208 (450)
T ss_pred CCCeEeecceEEcCC----CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCe---eeeeecccCCccHHH
Confidence 345788999988853 357888886 899999999999999999999999999988764 88888653 211
Q ss_pred --------CCCceEEEEcCCCc
Q 004932 179 --------MPYGSYGFVERETT 192 (723)
Q Consensus 179 --------~~~~~~~yv~Q~~~ 192 (723)
...+.+++++|.+.
T Consensus 209 ~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 209 FLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HhHHHHHHhhCCeEEEEEcCCC
Confidence 11246899999775
|
|
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.5e-05 Score=95.06 Aligned_cols=62 Identities=24% Similarity=0.327 Sum_probs=48.9
Q ss_pred HhhCCcEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCEEEEEEeCChH--------HHHhcCCEEEEEeC
Q 004932 262 LVMRPHVLFIDEPLYHLD-SVSALLMMVTLKKLASTGCTLLFTINQSST--------EVFGLFDRICLLSN 323 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD-~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~--------~i~~~~D~v~vL~~ 323 (723)
+-.+|+++++|||+.+|| +..+..+.+.++.+++.|.++++++|++.. .+.+.|+-.++|.+
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~ 702 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPN 702 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCC
Confidence 345899999999999999 788999999999999889999998888752 23344555555544
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.4e-06 Score=108.46 Aligned_cols=60 Identities=18% Similarity=0.276 Sum_probs=52.1
Q ss_pred CCCCCHHHHHHHH----HHHH--------HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCC
Q 004932 245 MKGLPCGERRRVR----IARE--------LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307 (723)
Q Consensus 245 ~~~LSGGerqRv~----IA~a--------L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~ 307 (723)
..+||||||||++ +|++ +..+|++++|||||+|||+.+...++++++++ |.++|++++..
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 4689999999996 5655 55899999999999999999999999999998 67888876654
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.11 E-value=9.7e-06 Score=102.26 Aligned_cols=44 Identities=27% Similarity=0.335 Sum_probs=36.0
Q ss_pred eeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 004932 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (723)
Q Consensus 129 vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G 174 (723)
+++..+.+++++|+|++|+|||||++++.+..... ..|.+.+++
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~ 243 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDR 243 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeec
Confidence 35566789999999999999999999998876442 358888875
|
syringae 6; Provisional |
| >TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00037 Score=72.55 Aligned_cols=220 Identities=13% Similarity=0.133 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCC----CCChHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHH
Q 004932 436 AVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGL----GHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIK 511 (723)
Q Consensus 436 ~~l~~R~~~~~~Rd~~~~~~r~~~~i~~al~~G~~f~~l----~~~~~~i~~r~g~lff~~~~~~~~~~~~~~~~~~er~ 511 (723)
+.+.+|.++.+.|.|..+..-.+..++.|+.. ..|... ..+..+.+. .| ... .+..+..+|.. -..
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~----~f-~~~--~~~~~~~~p~l--~~~ 71 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTP----FF-SLA--PWVFLFLIPAI--TMR 71 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHH----HH-HHH--HHHHHHHHHHH--HHH
Confidence 46789999999999999877766666666432 222110 111112211 11 111 11111112222 225
Q ss_pred HHHhhccCCCc--------chHHHHHHHHHHHHhHHHHHHH---hhhhhhhccccc---cccHHHHHHHHHHHHHHHHHH
Q 004932 512 TYASEESNMHS--------GALVFLLGQLLSSIPFLFLISI---SSSLVFYFLVGL---RDEFSLLMYFVLNFFMCLLVN 577 (723)
Q Consensus 512 v~~rE~~~g~Y--------~~~~y~la~~l~elP~~~i~~~---if~~i~Y~m~Gl---~~~~~~F~~f~l~~~~~~~~~ 577 (723)
.+.+||++|.. +...++++|.+.-+-..++..+ ++....++. |. ..+.+.++...+.+++...+.
T Consensus 72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (240)
T TIGR03518 72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQL-GNPVGNLDIGSTFGSYIGLLLLGSVY 150 (240)
T ss_pred HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCccccccHHHHHHHHHHHHHHHHHH
Confidence 67777777775 3477889999988655443322 222222221 22 224555554455556666678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccccccccCHhHHHHHHHHHHHhCCCcCCCCCccc
Q 004932 578 EGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFRIRNALPGPVWTYPISYVAFHTYSIKGLLENEYLGTSFPVGQVRT 657 (723)
Q Consensus 578 ~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~iP~~~W~~w~~yiSp~~Ya~~al~~nef~~~~~~~~~~~~ 657 (723)
.++|.++++++++...|..++..+..++ +.|+-. ..+++.+.|..|+.|+||..|-.+..
T Consensus 151 ~aig~~iSsl~~~q~~a~~~~~~~~~~l--~~~~~~-l~~~~~~~~~~~l~~~sp~~~~~~~~----------------- 210 (240)
T TIGR03518 151 TAIGLFASSLTENQIVAFIIAVFLCFLF--YFGFDG-LASLLWGGSAYTISELGLSYHYESIS----------------- 210 (240)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHH--HHHHHH-HhhhcchhHHHHHHHcCHHHHHHHHH-----------------
Confidence 8999999999999988876554433222 222211 12232113566799999976532211
Q ss_pred ccHHHHHhhhcCccccCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 004932 658 ISGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYL 701 (723)
Q Consensus 658 ~~G~~~L~~~~~~~~~~~~~w~~~~iL~~~~~~~~~l~~i~L~~ 701 (723)
+ |. -.|.++...+.+.+++..++...++.
T Consensus 211 -------~---g~-----i~~~~~v~~~~~~~~~l~l~~~~~~~ 239 (240)
T TIGR03518 211 -------R---GV-----IDSRDVIYFLSITVLFLALTKLQLKS 239 (240)
T ss_pred -------c---Cc-----ccHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 11 12567777888888887777766654
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.7e-06 Score=84.03 Aligned_cols=72 Identities=18% Similarity=0.172 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChH-HHHhcCCEEEEEeCC
Q 004932 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST-EVFGLFDRICLLSNG 324 (723)
Q Consensus 251 GerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~-~i~~~~D~v~vL~~G 324 (723)
|+-+|..||..+..+|+.+..+| +.+||.....+.+.+++..++|.+|++.+|.... .....||+++++..+
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 78899999999999999988777 8899999999999999887667788887776532 256789999887643
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=98.08 E-value=8.5e-05 Score=78.40 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=30.8
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
..|+++.+-+.+|+++.|.|++|+|||||+..++...
T Consensus 18 ~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 18 PVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred ceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4566666678899999999999999999999887543
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.6e-06 Score=84.46 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=30.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~ 176 (723)
+||+++|+|+||||||||+++|+|++.+ +.++|.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~ 36 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDD 36 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcc
Confidence 6999999999999999999999998754 4566654
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.5e-06 Score=66.49 Aligned_cols=36 Identities=44% Similarity=0.476 Sum_probs=28.4
Q ss_pred eceeeEEeC-CcEEEEECCCCCcHHHHHHHHHcCCCC
Q 004932 127 KSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 127 ~~vs~~v~~-Ge~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
++.++.+.+ |+++.|.|+||||||||+++|.=.+-+
T Consensus 13 ~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 13 DGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred CCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 344555655 679999999999999999999876544
|
|
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.4e-05 Score=70.35 Aligned_cols=48 Identities=27% Similarity=0.412 Sum_probs=36.7
Q ss_pred CCCCCHHHHH-HHHHHHHH------hh------CCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 004932 245 MKGLPCGERR-RVRIAREL------VM------RPHVLFIDEPLYHLDSVSALLMMVTLKK 292 (723)
Q Consensus 245 ~~~LSGGerq-Rv~IA~aL------~~------~P~lLlLDEPTsgLD~~~~~~i~~~L~~ 292 (723)
..++|||||| .+.++.++ -. .|++++||||+++||+.....++++|++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 3489999994 44444333 22 3799999999999999999999999874
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.5e-05 Score=93.81 Aligned_cols=113 Identities=19% Similarity=0.161 Sum_probs=70.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHh
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-----RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALL 209 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~-----~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~ 209 (723)
..+.++|+||||+|||||+++|.+..++.. ...+-|.++|.......+. + ++-.+
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~---------------i-~~~ll---- 233 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE---------------V-TNPLL---- 233 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH---------------H-hHHhc----
Confidence 356799999999999999999998764321 0113456665432100000 0 01001
Q ss_pred cCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 004932 210 QLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT 289 (723)
Q Consensus 210 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~ 289 (723)
. ...........+.++.+|+.+..+..+ ..+||| +||||| +..||+..+..+++.
T Consensus 234 g--~~~~~~~~~a~~~l~~~gl~~~~~g~v------~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~ 288 (615)
T TIGR02903 234 G--SVHDPIYQGARRDLAETGVPEPKTGLV------TDAHGG----------------VLFIDE-IGELDPLLQNKLLKV 288 (615)
T ss_pred C--CccHHHHHHHHHHHHHcCCCchhcCch------hhcCCC----------------eEEEec-cccCCHHHHHHHHHH
Confidence 0 000011223455677888876665544 478888 999999 899999999999888
Q ss_pred HHH
Q 004932 290 LKK 292 (723)
Q Consensus 290 L~~ 292 (723)
|++
T Consensus 289 Le~ 291 (615)
T TIGR02903 289 LED 291 (615)
T ss_pred Hhh
Confidence 875
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=4e-05 Score=88.89 Aligned_cols=65 Identities=15% Similarity=0.247 Sum_probs=49.1
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeC--------------ChHHHHhcCCEEEEEeCCeE-
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ--------------SSTEVFGLFDRICLLSNGNT- 326 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~--------------~~~~i~~~~D~v~vL~~G~i- 326 (723)
|..+|+++++||.-..-| ++.+..++..|..++.|+|- ....+...+|+|+.+++|++
T Consensus 321 LR~rPD~IivGEiRd~Et-------~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G~I~ 393 (602)
T PRK13764 321 LLVRPDYTIYDEMRKTED-------FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDGEVS 393 (602)
T ss_pred HhhCCCEEEECCCCCHHH-------HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCCEEE
Confidence 678999999999985332 44555555567788988882 23467778999999999999
Q ss_pred -EEEeChh
Q 004932 327 -LFFGETL 333 (723)
Q Consensus 327 -v~~G~~~ 333 (723)
+|.+...
T Consensus 394 ~v~~~~~~ 401 (602)
T PRK13764 394 KVYDLEFT 401 (602)
T ss_pred EEEeeeeE
Confidence 7777643
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00013 Score=72.66 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHH--HHHHHhh-CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 004932 246 KGLPCGERRRVR--IARELVM-RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 296 (723)
Q Consensus 246 ~~LSGGerqRv~--IA~aL~~-~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~ 296 (723)
..+++||+|++. +++.+-. +++++ |+|++|.....++.+.|.++.++
T Consensus 146 Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 146 DKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 368999999987 5555543 34443 99999999999999999988765
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.9e-05 Score=85.32 Aligned_cols=72 Identities=22% Similarity=0.147 Sum_probs=43.2
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC----ceEEEEcCCCccCCCCCHHHHHHH
Q 004932 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY----GSYGFVERETTLIGSLTVREYLYY 205 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~----~~~~yv~Q~~~l~~~lTV~E~l~~ 205 (723)
++|.+++|.||+||||||+|++|++.+.+.....+.|.....+++... ...+.+.|...--...+..+.+.-
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~ 207 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRN 207 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHH
Confidence 489999999999999999999999987432101135544444433211 124566775431112345555543
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00014 Score=74.64 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=44.3
Q ss_pred CCcEEEEeCCCC------CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh--------HHHHhcCCEEEEEe
Q 004932 265 RPHVLFIDEPLY------HLDSVSALLMMVTLKKLASTGCTLLFTINQSS--------TEVFGLFDRICLLS 322 (723)
Q Consensus 265 ~P~lLlLDEPTs------gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~--------~~i~~~~D~v~vL~ 322 (723)
+++++++| +.+ +.|...+..+.++++.+++.|.|+++++|... ..+..+||.|++|+
T Consensus 107 ~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 107 GASRVVID-PISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred CCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 68899999 433 44566778888999999989999999988631 23577899999994
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.6e-05 Score=87.45 Aligned_cols=169 Identities=13% Similarity=0.093 Sum_probs=99.1
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCC--------CCCceEEEE----
Q 004932 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA---KSE--------MPYGSYGFV---- 187 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~---~~~--------~~~~~~~yv---- 187 (723)
.++++++ +.+.+||.++|+|+||+|||||+++|+|..+... .|.|.+.|+ +.. ......+++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~--~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvat 228 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEAD--VNVIALIGERGREVREFIEGDLGEEGMKRSVIVVST 228 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCC--ceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeC
Confidence 4688888 9999999999999999999999999999874321 267777553 210 011123444
Q ss_pred -cCCC--ccCCCCCHHHHHHHHHHhcCCC--ccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 188 -ERET--TLIGSLTVREYLYYSALLQLPG--FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 188 -~Q~~--~l~~~lTV~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+|++ .+.+.+ +...+....+.+... ...+...++.+++++++|. ....... .-+|+.+|.
T Consensus 229 s~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~--gypP~~fS~----------- 294 (442)
T PRK06315 229 SDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARA--GYTPSVFST----------- 294 (442)
T ss_pred CCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCcccc--CCCCchhhH-----------
Confidence 7764 445544 555554333322111 1123567788999999994 1111111 124444441
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH--HcC-CEEEEEEeCChHHHH-hcCCEEEEEeCCeEEEEeCh
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA--STG-CTLLFTINQSSTEVF-GLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~--~~g-~tvi~t~h~~~~~i~-~~~D~v~vL~~G~iv~~G~~ 332 (723)
+-+++.+.. +.| .|.+.++.-+.+++- -++|.+.-+-+|+++-.-..
T Consensus 295 ------------------------l~~llERag~~~~GSITai~tVl~~gdD~~dpi~d~~~~i~dg~ivLsr~l 345 (442)
T PRK06315 295 ------------------------LPKLLERSGASDKGTITAFYTVLVAGDDMNEPVADEVKSILDGHIVLSNAL 345 (442)
T ss_pred ------------------------hHHHHHHhcCCCCcceeeeEEEEecCCCCCcccHHHhhhhcceEEEEeccH
Confidence 112222211 223 577777666544433 25788888889999876543
|
|
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00011 Score=83.24 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=43.4
Q ss_pred hCCcEEEEeCCCCCC----C-----HHHHHHHHHHHHHHH-HcCCEEEEEEeCChH-------HHHhcCCEEEEEeCCe
Q 004932 264 MRPHVLFIDEPLYHL----D-----SVSALLMMVTLKKLA-STGCTLLFTINQSST-------EVFGLFDRICLLSNGN 325 (723)
Q Consensus 264 ~~P~lLlLDEPTsgL----D-----~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~-------~i~~~~D~v~vL~~G~ 325 (723)
.+|+++++|.-++=. + .....+++..|.+++ +.|.|++++.|...+ .+.+++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 479999999876521 1 223455666677775 579999998885432 2577899999998654
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.3e-05 Score=76.66 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHh-----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 004932 247 GLPCGERRRVRIARELV-----MRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293 (723)
Q Consensus 247 ~LSGGerqRv~IA~aL~-----~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l 293 (723)
.++++++++.....+.. ..|+++ |+|++|.....++++.|.++
T Consensus 122 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 122 KLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred cCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 57889888876665533 345555 99999999999999988764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PF12679 ABC2_membrane_2: ABC-2 family transporter protein | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0033 Score=65.96 Aligned_cols=167 Identities=19% Similarity=0.264 Sum_probs=91.3
Q ss_pred HHHHhhccCCC--------cchHHHHHHHHHHHHhHHH---HHHHhh-hh--hhhccccccccHHHHHHHHHHHHHHHH-
Q 004932 511 KTYASEESNMH--------SGALVFLLGQLLSSIPFLF---LISISS-SL--VFYFLVGLRDEFSLLMYFVLNFFMCLL- 575 (723)
Q Consensus 511 ~v~~rE~~~g~--------Y~~~~y~la~~l~elP~~~---i~~~if-~~--i~Y~m~Gl~~~~~~F~~f~l~~~~~~~- 575 (723)
..+.+|+++|. ++...++++|.++-+...+ +..++- .+ ......|.+.+...++...+......+
T Consensus 88 ~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (277)
T PF12679_consen 88 DLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLA 167 (277)
T ss_pred HHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence 35667777664 5668899999999877632 211111 11 112223445555555544443333333
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccccc-CCCCCCccccc--ccccccCHhHHHHHHHHHHHhCCCcC
Q 004932 576 --VNEGLMLVVASIWKDVYWSILTLISVHVVMMLSAGYFR-IRNALPGPVWT--YPISYVAFHTYSIKGLLENEYLGTSF 650 (723)
Q Consensus 576 --~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i-~~~~iP~~~W~--~w~~yiSp~~Ya~~al~~nef~~~~~ 650 (723)
+..+++.++++++++...|..++..+............ ..+......|. ..+++++|..+ ++.+......+.
T Consensus 168 ~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~-- 244 (277)
T PF12679_consen 168 VLVFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANSEALPWVISPNLSFLSPFSP-FNLLIGSILGGG-- 244 (277)
T ss_pred HHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHcChHHH-HHHHHHHhhccc--
Confidence 45899999999999988888777665555433333322 11111100121 11355666542 222222211100
Q ss_pred CCCCcccccHHHHHhhhcCccccCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 004932 651 PVGQVRTISGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYL 701 (723)
Q Consensus 651 ~~~~~~~~~G~~~L~~~~~~~~~~~~~w~~~~iL~~~~~~~~~l~~i~L~~ 701 (723)
. .....|.++++++++.+++.++++...++
T Consensus 245 ------------------~---~~~~~~~~~~~~~~~~~v~l~la~~~F~r 274 (277)
T PF12679_consen 245 ------------------F---VWLSTWPSLLILLAYTLVFLALAYYRFQR 274 (277)
T ss_pred ------------------c---chhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 01346889999999999999999955543
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.3e-05 Score=87.49 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=47.9
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 004932 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~ 177 (723)
+.++++++ +.+.+||.++|+|+||+|||||+++|++...++..+.|.|-.+|++.
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev 192 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREV 192 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccH
Confidence 34689999 99999999999999999999999999999877644568898888753
|
|
| >PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00026 Score=78.26 Aligned_cols=79 Identities=18% Similarity=0.283 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC-----CHHHHHHH----------HHHHHHHH-HcCCEEEEEEeCChHH
Q 004932 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHL-----DSVSALLM----------MVTLKKLA-STGCTLLFTINQSSTE 310 (723)
Q Consensus 247 ~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgL-----D~~~~~~i----------~~~L~~l~-~~g~tvi~t~h~~~~~ 310 (723)
+=||-.-|=.+|..||=...++||+||=||+- |...+..| ++.++.|. +.|.+.|+++-- +..
T Consensus 322 ~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Gg-sgd 400 (448)
T PF09818_consen 322 NASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGG-SGD 400 (448)
T ss_pred CCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEecc-chh
Confidence 57999999999999999999999999999985 44445444 55667774 568877776644 467
Q ss_pred HHhcCCEEEEEeCCeE
Q 004932 311 VFGLFDRICLLSNGNT 326 (723)
Q Consensus 311 i~~~~D~v~vL~~G~i 326 (723)
.+..+|+|++|++=+.
T Consensus 401 y~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 401 YFDVADRVIMMDEYRP 416 (448)
T ss_pred hHhhCCEEEEecCccc
Confidence 8999999999987654
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 723 | ||||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 4e-14 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 4e-14 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 9e-14 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 8e-13 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 5e-12 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-10 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 2e-10 | ||
| 1g29_1 | 372 | Malk Length = 372 | 4e-10 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 7e-10 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-09 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 4e-09 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 9e-09 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-08 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-08 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-08 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 3e-08 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 5e-08 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 7e-08 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 7e-08 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 8e-08 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 1e-07 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 1e-07 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 6e-07 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 3e-06 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 3e-06 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 6e-06 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 6e-06 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 6e-06 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 9e-06 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 9e-06 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-05 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 1e-05 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-05 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 1e-05 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-05 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 2e-05 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-05 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-05 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 4e-05 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 6e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-04 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 5e-04 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 5e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 8e-04 |
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 5e-23
Identities = 50/196 (25%), Positives = 84/196 (42%), Gaps = 35/196 (17%)
Query: 143 GPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG---------AKSEMPYGSYGFVERETTL 193
GP +GK+T LR I+ + S+ G V V G + + ++ E
Sbjct: 48 GPNGAGKTTTLRIISTLIKPSS---GIVTVFGKNVVEEPHEVRKLI-----SYLPEEAGA 99
Query: 194 IGSLTVREYL-YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252
++ EYL + + + + +VE A L + + Y KG+
Sbjct: 100 YRNMQGIEYLRFVAGFYASSS--SEIEEMVERATEIAGLGEKIKDRVST--YSKGM---- 151
Query: 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST--- 309
R++ IAR L++ P + +DEP LD ++A + LK+ + G T+L + +
Sbjct: 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS-----SHNM 206
Query: 310 -EVFGLFDRICLLSNG 324
EV L DRI L+ NG
Sbjct: 207 LEVEFLCDRIALIHNG 222
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 3e-21
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 51/213 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY---------G 185
G + ++GP +GKSTLL +AG G + G P ++
Sbjct: 25 AGEILHLVGPNGAGKSTLLARMAGMTSGK----GSIQFAGQ----PLEAWSATKLALHRA 76
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG---GH 242
++ ++ T + V YL L Q R ++ D A++L D + G
Sbjct: 77 YLSQQQTPPFATPVWHYL---TLHQHDK---TRTELLNDVAGALALDDKLGRSTNQLSG- 129
Query: 243 CYMKGLPCGERRRVRIARELV-------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS 295
GE +RVR+A ++ +L +DEP+ LD + L L+
Sbjct: 130 --------GEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ 181
Query: 296 TGCTLLFT---INQSSTEVFGLF-DRICLLSNG 324
G ++ + +N + R LL G
Sbjct: 182 QGLAIVMSSHDLNHTL-----RHAHRAWLLKGG 209
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 6e-21
Identities = 50/221 (22%), Positives = 87/221 (39%), Gaps = 42/221 (19%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERET-TL 193
G ++ G +GK+TLL + P ++ G V + G G G+
Sbjct: 46 KGDKWILYGLNGAGKTTLLNILNAYEPATS---GTVNLFG----KMPGKVGYSAETVRQH 98
Query: 194 IG------------SLTVREYLYYSALLQLPGFFCQR----KNVVEDAIHAMSLSDYANK 237
IG V + + S + G + +N + + +S A +
Sbjct: 99 IGFVSHSLLEKFQEGERVIDVVI-SGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQ 157
Query: 238 LIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTG 297
IG L GE++RV IAR L+ +P VL +DEP LD ++ ++ L L+ +
Sbjct: 158 YIGY------LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSY 211
Query: 298 --CTLLFTINQSST----EVFGLFDRICLLSNGNTLFFGET 332
+++ T E+ F +I LL +G ++ G
Sbjct: 212 PTLAMIYV-----THFIEEITANFSKILLLKDGQSIQQGAV 247
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 9e-21
Identities = 48/224 (21%), Positives = 89/224 (39%), Gaps = 37/224 (16%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
+DL+ Y V++ G + GP GK+TLL+ I+ L G
Sbjct: 14 RDLS------VGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLK---G 64
Query: 169 EVFVNG-----AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALL-QLPGFFCQRKNVV 222
E+ NG K ++ F+ E + ++V +YL A L + KN +
Sbjct: 65 EIIYNGVPITKVKGKI-----FFLPEEIIVPRKISVEDYLKAVASLYGVKV----NKNEI 115
Query: 223 EDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
DA+ ++ + D KL L G RRV++A L++ + +D+P+ +D S
Sbjct: 116 MDALESVEVLDLKKKL-------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 168
Query: 283 ALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGN 325
++ ++ ++ G ++ + E D L +
Sbjct: 169 KHKVLKSILEILKEKGIVIISS-----REELSYCDVNENLHKYS 207
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 3e-20
Identities = 52/226 (23%), Positives = 101/226 (44%), Gaps = 31/226 (13%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
K++ +T+ GK Y +++ N + G +I+GP SGK+TLLRAI+G LP+S G
Sbjct: 5 KNVGITLSGKG-YERFSLENIN-LEVNGEKVIILGPNGSGKTTLLRAISGLLPYS----G 58
Query: 169 EVFVNGAK-SEMPYGSYGFVERETTLIGS----LTVREYLYYSALLQLPGFFCQRKNVVE 223
+F+NG + ++ + T L + +TV + +Y +L G +++
Sbjct: 59 NIFINGMEVRKIR-NYIRYS---TNLPEAYEIGVTVNDIVYL--YEELKGL---DRDLFL 109
Query: 224 DAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
+ + A+ L + + + L G+ VR + L +P ++ +DEP ++D+
Sbjct: 110 EMLKALKLGEEILRR------KLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 283 ALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328
++ +K+ +L T + + GN L
Sbjct: 164 RHVISRYIKEYGKE--GILVTHELD--MLNLYKEYKAYFLVGNRLQ 205
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 1e-19
Identities = 51/243 (20%), Positives = 90/243 (37%), Gaps = 59/243 (24%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
+ +++ L + G + ++G GKSTLL + G
Sbjct: 16 AENFLFQQLNFDLN------------------KGDILAVLGQNGCGKSTLLDLLLGIHRP 57
Query: 163 SARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY-LY----YSALLQLPGFFCQ 217
G++ V Y S GFV + + + +V + L + P
Sbjct: 58 IQ---GKIEV--------YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPK---S 103
Query: 218 R-KNVVEDAIHAMSLSDYANKLIG---GHCYMKGLPCGERRRVRIARELVMRPHVLFIDE 273
V A+ ++L+ A + G G+R+ + IAR + ++ +DE
Sbjct: 104 HDYQVAMQALDYLNLTHLAKREFTSLSG---------GQRQLILIARAIASECKLILLDE 154
Query: 274 PLYHLDSVSALLMMVTLKKLAST-GCTLLFT---INQSSTEVFGLFDRICLLSNGNTLFF 329
P LD + +++ L LA + T++FT NQ V + ++ LL N F
Sbjct: 155 PTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ----VVAIANKTLLL-NKQNFKF 209
Query: 330 GET 332
GET
Sbjct: 210 GET 212
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 1e-16
Identities = 33/194 (17%), Positives = 59/194 (30%), Gaps = 37/194 (19%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK- 176
++ D + NG A G + I+GP GK+T R + G + G V
Sbjct: 276 IKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADE---GSVTPEKQIL 332
Query: 177 -------SEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM 229
G TV++YL E+ +
Sbjct: 333 SYKPQRIFPNYDG---------------TVQQYL----ENASKDALSTSSWFFEEVTKRL 373
Query: 230 SLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT 289
+L + L GE +++ IA L + +D+P +LD ++
Sbjct: 374 NLHRLLES------NVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKA 427
Query: 290 LKKLA-STGCTLLF 302
+K++
Sbjct: 428 IKRVTRERKAVTFI 441
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 9e-08
Identities = 35/223 (15%), Positives = 77/223 (34%), Gaps = 35/223 (15%)
Query: 120 RYSDKVVKSSNGYALP----GTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNG 174
RY K + LP T+ ++G GK+T+L+ +AG + P+ +V +
Sbjct: 8 RYKVNGFK---LFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDE 64
Query: 175 AKSEMPYGSYGFVERE--TTLIGSL-------TVREYLYYSALLQLPGFFCQRKNVVEDA 225
+E + + + ++L + L + ++
Sbjct: 65 VLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKI--DERGKKDEV 122
Query: 226 IHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285
+++++ NK L G +R+ +A L+ V D+P +LD +
Sbjct: 123 KELLNMTNLWNK------DANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMN 176
Query: 286 MMVTLKKLASTGCTLLFTINQSST----EVFGLFDRICLLSNG 324
M +++L ++ + L D I ++
Sbjct: 177 MAKAIRELL-KNKYVIV-----VDHDLIVLDYLTDLIHIIYGE 213
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 2e-16
Identities = 40/229 (17%), Positives = 75/229 (32%), Gaps = 24/229 (10%)
Query: 76 PSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKG-KRRYSDKVVKSSNGYAL 134
+ + +L +A + K+ D V+ G
Sbjct: 317 FLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFS 376
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
+ V+MG +GK+TL++ +AG L G+ S P ++
Sbjct: 377 DSEILVMMGENGTGKTTLIKLLAGALKPDE---GQDIPKLNVSMKP--------QKIAPK 425
Query: 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254
TVR+ + Q D + + + D ++ ++ L GE +
Sbjct: 426 FPGTVRQLFFKKIRGQF-----LNPQFQTDVVKPLRIDDIIDQ------EVQHLSGGELQ 474
Query: 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLF 302
RV I L + + IDEP +LDS ++ +++ T
Sbjct: 475 RVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFI 523
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 5e-10
Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 32/209 (15%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY------GEVFVNGAKSEMPYGSYGFVE 188
PG + ++G GKST L+ +AG+ + + E+ SE+ +E
Sbjct: 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLE 161
Query: 189 RE---------TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLI 239
+ I LL+L + V+ I + L + +
Sbjct: 162 DDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME--KSPEDVKRYIKILQLENVLKR-- 217
Query: 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 299
++ L GE +R I V V DEP +LD L ++ L +
Sbjct: 218 ----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKY 273
Query: 300 LLFTINQSST----EVFGLFDRICLLSNG 324
++ + L D +C++
Sbjct: 274 VIC-----VEHDLSVLDYLSDFVCIIYGV 297
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 3e-16
Identities = 37/189 (19%), Positives = 70/189 (37%), Gaps = 25/189 (13%)
Query: 116 KGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175
+ + Y ++ G G + I+GP GK+T ++ +AG + G+V +
Sbjct: 362 RLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE---GKVEWDLT 418
Query: 176 KS-EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY 234
+ + Y + TV E L +L + + + + D
Sbjct: 419 VAYKPQYIKAEY---------EGTVYELLSKIDSSKLN-----SNFYKTELLKPLGIIDL 464
Query: 235 ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294
++ ++ L GE +RV IA L+ + +DEP +LD L + ++ L
Sbjct: 465 YDR------NVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 518
Query: 295 -STGCTLLF 302
T L
Sbjct: 519 EKNEKTALV 527
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 6e-11
Identities = 42/200 (21%), Positives = 76/200 (38%), Gaps = 33/200 (16%)
Query: 120 RYSDKVVKSSNGYAL-PGTMTVIMGPAKSGKSTLLRAIAGRLPHS---ARMYGEVFVNGA 175
RY + G + I+GP +GK+T ++ +AG+L + + +
Sbjct: 100 RYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159
Query: 176 K-SEMPY-------GSYGFVERE--TTLIGSLT---VREYLYYSALLQLPGFFCQRKNVV 222
+ +E+ G V + L+ VRE L
Sbjct: 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV----------DEVGKF 209
Query: 223 EDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282
E+ + + L + ++ + L GE +RV IA L+ + H F DEP +LD
Sbjct: 210 EEVVKELELENVLDR------ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263
Query: 283 ALLMMVTLKKLASTGCTLLF 302
L + +++LA+ G +L
Sbjct: 264 RLKVARVIRRLANEGKAVLV 283
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 3e-15
Identities = 41/228 (17%), Positives = 78/228 (34%), Gaps = 32/228 (14%)
Query: 78 LSKLNSGSLPSPPLPEGAAVARKIAGASVV-WKDLTVTIKGKRRYSDKVVKSSNGYALPG 136
L N P +I ++V + L + Y ++ G G
Sbjct: 259 LKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLV------KDYGSFRLEVEPGEIKKG 312
Query: 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EMPYGSYGFVERETTLIG 195
+ I+GP GK+T ++ +AG + G++ + + + Y +
Sbjct: 313 EVIGIVGPNGIGKTTFVKMLAGVEEPTE---GKIEWDLTVAYKPQYIKADY--------- 360
Query: 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255
TV E L ++ + + + + D ++ + L GE +R
Sbjct: 361 EGTVYELL-----SKIDASKLNSNFYKTELLKPLGIIDLYDR------EVNELSGGELQR 409
Query: 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLF 302
V IA L+ + +DEP +LD L + ++ L T L
Sbjct: 410 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 457
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 5e-10
Identities = 44/221 (19%), Positives = 80/221 (36%), Gaps = 38/221 (17%)
Query: 120 RYSDKVVKSSNGYAL-PGTMTVIMGPAKSGKSTLLRAIAGRLP---HSARMYGEVFVNGA 175
RY + G + I+GP +GKST ++ +AG+L + +
Sbjct: 30 RYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAF 89
Query: 176 K-SEMPYGSYGFVERE---------TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDA 225
+ +E+ E LI + + LL+ +E+
Sbjct: 90 RGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIE---LLKKA----DETGKLEEV 142
Query: 226 IHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285
+ A+ L + + ++ L GE +RV IA L+ F DEP +LD L
Sbjct: 143 VKALELENVLER------EIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLN 196
Query: 286 MMVTLKKLASTGCTLLFTINQSSTE-----VFGLFDRICLL 321
+++L+ G ++L E + L D I ++
Sbjct: 197 AARAIRRLSEEGKSVLV------VEHDLAVLDYLSDIIHVV 231
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 5e-13
Identities = 50/219 (22%), Positives = 91/219 (41%), Gaps = 44/219 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVE-R---- 189
G +T I+G GKSTL + G L S+ G + + + Y G ++ R
Sbjct: 33 RGEVTAILGGNGVGKSTLFQNFNGILKPSS---GRILFDN--KPIDYSRKGIMKLRESIG 87
Query: 190 ------ETTLIGSLTVREYLYYSAL-LQLPGFFCQRKNVVEDAIHAMSLSDYANK----L 238
+ L + +V + + + A+ ++LP +++ V++A+ + +K L
Sbjct: 88 IVFQDPDNQLFSA-SVYQDVSFGAVNMKLPEDEIRKR--VDNALKRTGIEHLKDKPTHCL 144
Query: 239 IGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTG 297
G +++RV IA LVM P VL +DEP LD + +M L ++ G
Sbjct: 145 SFG----------QKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELG 194
Query: 298 CTLLFTINQSST----EVFGLFDRICLLSNGNTLFFGET 332
T++ +T V D + ++ G + G
Sbjct: 195 ITII-----IATHDIDIVPLYCDNVFVMKEGRVILQGNP 228
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 5e-13
Identities = 49/214 (22%), Positives = 88/214 (41%), Gaps = 29/214 (13%)
Query: 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY--GSYGFV--ERET 191
G ++ G SGKSTLL+ +AG + ++ G+V +G + + + G E
Sbjct: 33 GECLLVAGNTGSGKSTLLQIVAGLIEPTS---GDVLYDGERKKGYEIRRNIGIAFQYPED 89
Query: 192 TLIGSLTVREYLYYSAL-LQLPGFFCQRKNVVEDAIHA--MSLSDYANK----LIGGHCY 244
V + + ++ V+ A+ + + ++ L GG
Sbjct: 90 QFFAE-RVFDEVAFAVKNFYPDRDPVPL---VKKAMEFVGLDFDSFKDRVPFFLSGG--- 142
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTI 304
E+RRV IA +V P +L +DEPL LD ++ ++K + G T++ I
Sbjct: 143 -------EKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVIL-I 194
Query: 305 NQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338
+ V DR+ +L G +F G + L+
Sbjct: 195 SHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 9e-13
Identities = 53/193 (27%), Positives = 85/193 (44%), Gaps = 25/193 (12%)
Query: 140 VIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK--SEMPYG-SYGFVERETTLIGS 196
V++GP +GKS L IAG + GEV +NGA P GFV ++ L
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDR---GEVRLNGADITPLPPERRGIGFVPQDYALFPH 84
Query: 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256
L+V + Y L + +R V + + ++ ++ L GER+RV
Sbjct: 85 LSVYRNIAY-GLRNVER--VERDRRVREMAEKLGIAHLLDR------KPARLSGGERQRV 135
Query: 257 RIARELVMRPHVLFIDEPLYHLDSVSALL---MMVTLKKL-ASTGCTLLF-TINQSSTEV 311
+AR LV++P +L +DEPL +D +M L+ + +L T + E
Sbjct: 136 ALARALVIQPRLLLLDEPLSAVD---LKTKGVLMEELRFVQREFDVPILHVTHDLI--EA 190
Query: 312 FGLFDRICLLSNG 324
L D + ++ NG
Sbjct: 191 AMLADEVAVMLNG 203
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 67.1 bits (165), Expect = 1e-12
Identities = 54/188 (28%), Positives = 77/188 (40%), Gaps = 41/188 (21%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAK---------SEMPYGS 183
G I+G + SGKSTLL I G L P G+VF+ G + S +
Sbjct: 29 KGEFVSIIGASGSGKSTLLY-ILGLLDAPTE----GKVFLEGKEVDYTNEKELSLLRNRK 83
Query: 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFC-----QRKNVVEDAIHAMSLSDYA--- 235
GFV + LI LT E + +P + K E + + L D
Sbjct: 84 LGFVFQFHYLIPELTALENV------IVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRK 137
Query: 236 -NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294
+L GG E++RV IAR L P +LF DEP +LDS + +M K+
Sbjct: 138 PYELSGG----------EQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187
Query: 295 STGCTLLF 302
G +++
Sbjct: 188 EGGTSIVM 195
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 1e-11
Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 38/189 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAK-SEMPY--------GS 183
G IMGP+ SGKST+L I G L P GEV+++ K +++
Sbjct: 30 EGEFVSIMGPSGSGKSTMLN-IIGCLDKPTE----GEVYIDNIKTNDLDDDELTKIRRDK 84
Query: 184 YGFVERETTLIGSLTVREY----LYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-----Y 234
GFV ++ LI LT E L + + G +R+ + + L +
Sbjct: 85 IGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG--EERRKRALECLKMAELEERFANHK 142
Query: 235 ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL- 293
N+L GG +++RV IAR L P ++ D+P + LDS + +M LKKL
Sbjct: 143 PNQLSGG----------QQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLN 192
Query: 294 ASTGCTLLF 302
G T++
Sbjct: 193 EEDGKTVVV 201
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 1e-09
Identities = 49/208 (23%), Positives = 86/208 (41%), Gaps = 39/208 (18%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFV---ERET 191
PG + I+G + GK+TLLR +AG + GE+ ++G + + + ER
Sbjct: 29 PGEILFIIGASGCGKTTLLRCLAGFEQPDS---GEISLSG---KTIFSKNTNLPVRERR- 81
Query: 192 TLIGS----------LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG 241
+G LTV + Y L G Q + +E + +S+ A +
Sbjct: 82 --LGYLVQEGVLFPHLTVYRNIAY-GLGNGKGRTAQERQRIEAMLELTGISELAGR---- 134
Query: 242 HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL---MMVTLKKL-ASTG 297
Y L G+++R +AR L P ++ +DEP LD L + + + G
Sbjct: 135 --YPHELSGGQQQRAALARALAPDPELILLDEPFSALD---EQLRRQIREDMIAALRANG 189
Query: 298 CTLLF-TINQSSTEVFGLFDRICLLSNG 324
+ +F + ++ E DRI ++ G
Sbjct: 190 KSAVFVSHDRE--EALQYADRIAVMKQG 215
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 49/235 (20%), Positives = 92/235 (39%), Gaps = 55/235 (23%)
Query: 113 VTIKG-KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF 171
+ I+ R++ + + + + G VI+GP +GK+ L IAG + G +
Sbjct: 2 IEIESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDS---GRIL 58
Query: 172 VNGAKSEM----PYGSYGFVERETTLIGS----------LTVREYLYYSALLQLPGFFCQ 217
++G ++ P + + I + V++ L + +++ +
Sbjct: 59 LDGK--DVTDLSPE------KHD---IAFVYQNYSLFPHMNVKKNLEFG--MRMKKI--K 103
Query: 218 RKNVVEDAIHAMSLSDYANKLIG---GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274
V D + + ++ G GE++RV +AR LV P +L +DEP
Sbjct: 104 DPKRVLDTARDLKIEHLLDRNPLTLSG---------GEQQRVALARALVTNPKILLLDEP 154
Query: 275 LYHLDSVSALL---MMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRICLLSNG 324
L LD L L T+L T +Q+ E + DRI ++ +G
Sbjct: 155 LSALD---PRTQENAREMLSVLHKKNKLTVLHITHDQT--EARIMADRIAVVMDG 204
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 7e-09
Identities = 51/236 (21%), Positives = 98/236 (41%), Gaps = 44/236 (18%)
Query: 112 TVTIKG-KRRYSDKVVKSSNGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRL--PHSAR 165
+ +K + + V + + + G I+GP+ +GK+T +R IAG L P +
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG-LDVPSTGE 61
Query: 166 MY-GEVFVNGAKSE----------MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214
+Y + V M + ++ L +LT E + + L
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWA-------LYPNLTAFENIAFP--LTNMKM 112
Query: 215 F-CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDE 273
+ + VE+ + + N + + L +++RV +AR LV P +L +DE
Sbjct: 113 SKEEIRKRVEEVAKILDIHHVLNH------FPRELSGAQQQRVALARALVKDPSLLLLDE 166
Query: 274 PLYHLDSVSALL---MMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRICLLSNG 324
P +LD A + +K++ + G TLL + + ++F + DR+ +L G
Sbjct: 167 PFSNLD---ARMRDSARALVKEVQSRLGVTLLVVSHDP--ADIFAIADRVGVLVKG 217
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 59/230 (25%), Positives = 105/230 (45%), Gaps = 32/230 (13%)
Query: 110 DLTVTIKG-KRRYSDK--VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARM 166
+T+ G ++ Y V+ + G M ++GP+ SGK+T+LR IAG +
Sbjct: 12 SMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTK-- 69
Query: 167 YGEVFVNGAK-SEMPYGSY----GFVERETTLIGSLTVREYLYYSALLQLPGF-FCQRKN 220
G+V++ G + +++P G V + L +TV + + + L+ +
Sbjct: 70 -GDVWIGGKRVTDLP--PQKRNVGLVFQNYALFQHMTVYDNVSFG--LREKRVPKDEMDA 124
Query: 221 VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280
V + + M L YAN+ + G G+++RV +AR L RP VL DEP +D
Sbjct: 125 RVRELLRFMRLESYANRFPHE---LSG---GQQQRVALARALAPRPQVLLFDEPFAAID- 177
Query: 281 VSALL---MMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRICLLSNGN 325
+ + ++++ G T +F T +Q E + DR+ +L GN
Sbjct: 178 --TQIRRELRTFVRQVHDEMGVTSVFVTHDQE--EALEVADRVLVLHEGN 223
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 2e-08
Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 34/183 (18%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERET--- 191
G + V++GP+ SGKST LR + GE+ ++G + + V E
Sbjct: 49 EGEVVVVIGPSGSGKSTFLRCLNLLEDFDE---GEIIIDGINLKAKDTNLNKVREEVGMV 105
Query: 192 ----TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS---LSDYANKLIGGHCY 244
L +TV + A +++ + R+ A+ + L D A+ Y
Sbjct: 106 FQRFNLFPHMTVLNNITL-APMKVRKW--PREKAEAKAMELLDKVGLKDKAHA------Y 156
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL-LMMV-----TLKKLASTGC 298
L G+ +RV IAR L M P ++ DEP SAL MV +K+LA+ G
Sbjct: 157 PDSLSGGQAQRVAIARALAMEPKIMLFDEP------TSALDPEMVGEVLSVMKQLANEGM 210
Query: 299 TLL 301
T++
Sbjct: 211 TMV 213
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 3e-08
Identities = 48/223 (21%), Positives = 79/223 (35%), Gaps = 46/223 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSYGFVER---- 189
G +T+I+GP SGKSTL+ I G L G V+ +
Sbjct: 32 KGDVTLIIGPNGSGKSTLINVITGFLKADE---GRVYFENKDITNKE--PAELYHYGIVR 86
Query: 190 ---ETTLIGSLTVRE-----------YLYYSALLQLPGFFCQRKNVVEDAIHA---MSLS 232
+ +TV E S + + + +VE A + LS
Sbjct: 87 TFQTPQPLKEMTVLENLLIGEICPGESPLNSLFY--KKWIPKEEEMVEKAFKILEFLKLS 144
Query: 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
++ G L G+ + V I R L+ P ++ +DEP+ + A + + +
Sbjct: 145 HLYDRKAGE------LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198
Query: 293 LASTGCTLLFTINQSSTE-----VFGLFDRICLLSNGNTLFFG 330
L + G T L I E V D + ++ NG + G
Sbjct: 199 LKAKGITFLI-I-----EHRLDIVLNYIDHLYVMFNGQIIAEG 235
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 6e-08
Identities = 37/196 (18%), Positives = 73/196 (37%), Gaps = 31/196 (15%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
+DL + ++ + I GP GKSTL+RAIA ++ G
Sbjct: 434 EDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANG-----QVDG 488
Query: 169 EVFVNGAKSEMPYGSYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIH 227
++ +VE + +V ++++ S + K ++D +
Sbjct: 489 FPTQEECRT-------VYVEHDIDGTHSDTSVLDFVFESGV--------GTKEAIKDKLI 533
Query: 228 AMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 287
+D + + L G + ++ +AR ++ +L +DEP HLD + +
Sbjct: 534 EFGFTDEMIAMP-----ISALSGGWKMKLALARAVLRNADILLLDEPTNHLD----TVNV 584
Query: 288 VTLKK-LASTGCTLLF 302
L L + G T +
Sbjct: 585 AWLVNYLNTCGITSIT 600
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 9e-06
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 242 HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD--SVSAL 284
H ++GL G++ ++ +A RPH++ +DEP +LD S+ AL
Sbjct: 896 HSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGAL 940
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 2e-07
Identities = 75/531 (14%), Positives = 154/531 (29%), Gaps = 138/531 (25%)
Query: 105 SVVWKDLTVTIKGKRRYSDKVVKSSNG-YAL-PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
++ D V K +K L P +I G SGK+ + +
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 163 SARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVV 222
+M ++F + + T++ L + L Y Q+ + R +
Sbjct: 177 QCKMDFKIF---------WLNLKNCNSPETVLEML---QKLLY----QIDPNWTSRSDHS 220
Query: 223 EDAIHAM-SLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281
+ + S+ +L+ Y L LV+ +V + +
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCL-------------LVLL-NV-------QNAKAW 259
Query: 282 SALLMMVTLKKLASTGC-TLLFTINQSSTEVFGLFDR--ICLLSNGNTLFFGETLACLQH 338
+A + C LL T + T+ I L + TL E + L
Sbjct: 260 NAF----------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 339 FSNAGF---P---CPIMQSP----------SDH-----FLRAINTD-FDRIIAMC----- 371
+ + P +P D + +N D II
Sbjct: 310 YLDCRPQDLPREVLTT--NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 372 -KSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMI-----LRLTEKEGP---- 421
++ S + L + + V ++ L EK+
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV-IKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 422 -----FLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCM--ILTLCV-GTVFSG 473
+L+ K K + + RS++ +Y + ++ + +S
Sbjct: 427 SIPSIYLELKVKLENEYALH----RSIV------DHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 474 LGHSLSSV-VTRVAAIF--VFVSFN-----------SLLNIAGVPALMKEIKTYASEESN 519
+GH L ++ +F VF+ F + + ++++K Y +
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 520 MHSGALVFLLGQLLSSIPFLFLISISSSLVFYFLVGLRDEFSLLMYFVLNF 570
+ L+ +L FL I +L+ +++ L+ L
Sbjct: 537 -NDPKYERLVNAILD-----FLPKIEENLI-------CSKYTDLLRIALMA 574
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 5e-04
Identities = 89/605 (14%), Positives = 178/605 (29%), Gaps = 205/605 (33%)
Query: 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259
+ LL +++ +V+ + + +Y K + M + +R+ +
Sbjct: 63 GTLRLFWTLLS------KQEEMVQKFVEEVLRINY--KFL-----MSPIKTEQRQPSMMT 109
Query: 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319
R + + L+ D ++ +VS L + L++ LL + + G+
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ------ALLELRPAKNVLIDGVL---- 159
Query: 320 LLSNGNTLFFGET-LA---CLQHFSNAGFPCPIMQSPSDHF---LRAINTDFDRIIAMCK 372
G G+T +A CL + I F L+ N+ + + K
Sbjct: 160 ----G----SGKTWVALDVCLSYKVQCKMDFKI-------FWLNLKNCNSPETVLEMLQK 204
Query: 373 SWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKEGPFLKSKGKASSA 432
+++S D + I+ + ++ L LKSK
Sbjct: 205 LLYQIDPNWTS-RSDHSSNIKLR------------IHSIQAELRR----LLKSKPYE--- 244
Query: 433 TRVAVLTWRSLLIM-----SREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAA 487
LL++ ++ W + L C IL + TR
Sbjct: 245 --------NCLLVLLNVQNAKAWNAFNLS---CKIL-----------------LTTRFKQ 276
Query: 488 IFVFVSFNSLLNIAGVPALMKEIKTYASEES--------NMHSGAL-----------VFL 528
+ F+S + +L T +E + L + +
Sbjct: 277 VTDFLSAAT----TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 529 LGQLLSSIPFLF-----------LISISSSLVFYFLVGLRDEFSLLMYF---------VL 568
+ + + + I SSL R F L F +L
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 569 NFFMCLLVNEGLMLVVASI---------WKDVYWSILTL-----------ISVHVVMMLS 608
+ ++ +M+VV + K+ SI ++ ++H +
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH--RSIV 450
Query: 609 AGYFRIR-----NALPGPVWTYPISYVAFHTYSIK-----GLLENEYLGTSFPVGQVRTI 658
Y + + +P + Y S++ H +I+ L +L F ++R
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR-- 508
Query: 659 SGYQALQSAYDISSKSNSKWGNLLVLFLMAIGYRLLLFVLLYLRVKKNTFIHKLFKCDHD 718
++ W A G +L L L+ K +I CD+D
Sbjct: 509 --------------HDSTAWN--------ASGS--ILNTLQQLKFYKP-YI-----CDND 538
Query: 719 TNNHR 723
R
Sbjct: 539 PKYER 543
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 7e-04
Identities = 72/468 (15%), Positives = 140/468 (29%), Gaps = 143/468 (30%)
Query: 355 HFLRAINTDFDRIIAMCKSWQDD-HGDFSSVNMDTAVAIRT-LEATY---------QSSA 403
F A +FD CK QD S +D + + + T Q
Sbjct: 24 VFEDAFVDNFD-----CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 404 DAAAVETMILRLTEKEGPFLKSK----GKASSATRVAVLTWRSLLI----------MSRE 449
VE ++ FL S + S + R L +SR
Sbjct: 79 VQKFVEEVL----RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 450 WKYYWLRLILCMI-----LTLCVGTVFSGLGHS-LSSVVTRVAAIFVFVSFNSL-LNIAG 502
Y LR L + + + G G G + ++ V + + F LN+
Sbjct: 135 QPYLKLRQALLELRPAKNVLID-G--VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK- 190
Query: 503 VPALMKEIKTYASEESNMHSGALVFLLGQLLSSI--PFLFLISISSSLVFYFLVGLRDEF 560
S E+ ++ +L +LL I + SS++ + ++ E
Sbjct: 191 ---------NCNSPET------VLEMLQKLLYQIDPNWTSRSDHSSNI-KLRIHSIQAEL 234
Query: 561 SLLMYFVLNFFMCLLVNEGLMLVVASIWKDVYWS--ILTLISVHVVMMLSAGYFRIRNAL 618
L+ + CLLV L +V + ++ ++L+ + ++ + L
Sbjct: 235 RRLL-KSKPYENCLLV---L--------LNV-QNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 619 PGPVWTYPIS---YVAFHTYSIKGLLENEYLGTSF---PVGQVRTIS------------- 659
T+ + +K LL YL P +V T +
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLK-YLDCRPQDLPR-EVLTTNPRRLSIIAESIRD 339
Query: 660 -----------GYQALQSAYDISSKS------------------NSK---------WGNL 681
L + + S ++ W ++
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 682 LVLFLMAIGYRLLLFVLLYLRVKKNTF-IHKLF-----KCDHDTNNHR 723
+ +M + +L + L+ + K++T I ++ K +++ HR
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 52/196 (26%), Positives = 79/196 (40%), Gaps = 48/196 (24%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEMPYGSYGF------ 186
G + I+G + SGKST LR I L P G + VNG + G
Sbjct: 31 AGDVISIIGSSGSGKSTFLRCI-NFLEKPSE----GAIIVNGQNINLVRDKDGQLKVADK 85
Query: 187 --VERETTLIG----------SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS---L 231
+ T + +TV E + A +Q+ G + + E A+ ++ +
Sbjct: 86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVME-APIQVLGL--SKHDARERALKYLAKVGI 142
Query: 232 SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL-LMMV-- 288
+ A Y L G+++RV IAR L M P VL DEP SAL +V
Sbjct: 143 DERAQGK-----YPVHLSGGQQQRVSIARALAMEPDVLLFDEP------TSALDPELVGE 191
Query: 289 ---TLKKLASTGCTLL 301
+++LA G T++
Sbjct: 192 VLRIMQQLAEEGKTMV 207
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 3e-06
Identities = 53/257 (20%), Positives = 99/257 (38%), Gaps = 63/257 (24%)
Query: 96 AVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRA 155
K G ++ + D V ++ + + +KS N + GT ++G SGKST+ +
Sbjct: 8 TSHEKKFGVNIEFSD--VNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKL 65
Query: 156 IAGRLPHSARMY---GEVFVNGAK-SEMPYGSY----GFVERETTLIGSLTVREYLYYSA 207
+ R Y G++ + G ++ S G V ++T L T++ + Y
Sbjct: 66 L-------YRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNE-TIKYNILYG- 116
Query: 208 LLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC---------------GE 252
+ + ++ + A K + +++ LP GE
Sbjct: 117 ----------KLDATDEEVIK------ATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGE 160
Query: 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL-----LFTINQS 307
R+R+ IAR L+ P ++ DE LDS + L ++ L + L TI+ +
Sbjct: 161 RQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSA 220
Query: 308 STEVFGLFDRICLLSNG 324
+ I LL+ G
Sbjct: 221 --------ESIILLNKG 229
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 67/267 (25%), Positives = 114/267 (42%), Gaps = 44/267 (16%)
Query: 112 TVTIKG-KRRYSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMY 167
+ ++ +++ + + + N G ++GP+ SGKSTLL IAG + P S ++Y
Sbjct: 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG-IYKPTSGKIY 61
Query: 168 -GEVFVNGAKSE-----MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF-FCQRKN 220
E V + + + ++ L +TV + + + L+L +
Sbjct: 62 FDEKDVTELPPKDRNVGLVFQNWA-------LYPHMTVYKNIAFP--LELRKAPREEIDK 112
Query: 221 VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280
V + + + N+ Y L G+++RV IAR LV P VL +DEPL +LD
Sbjct: 113 KVREVAKMLHIDKLLNR------YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD- 165
Query: 281 VSALL---MMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335
ALL + LK+L G T ++ T +Q E + DRI ++ G L G
Sbjct: 166 --ALLRLEVRAELKRLQKELGITTVYVTHDQ--AEALAMADRIAVIREGEILQVGTPDEV 221
Query: 336 LQHFSN---AGFPCPIMQSPSDHFLRA 359
GF + +P +F+ A
Sbjct: 222 YYKPKYKFVGGF----LGNPPMNFVEA 244
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 4e-06
Identities = 86/533 (16%), Positives = 161/533 (30%), Gaps = 126/533 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAK-SEMPYGSY----G 185
G ++G + GKST ++ + R+Y G V ++G + G
Sbjct: 415 SGQTVALVGNSGCGKSTTVQLMQ-------RLYDPLDGMVSIDGQDIRTINVRYLREIIG 467
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA------MSLSDYANKLI 239
V +E L + T+ E + Y + + A M L + L+
Sbjct: 468 VVSQEPVLF-ATTIAENIRYG----RED--VTMDEIEKAVKEANAYDFIMKLPHQFDTLV 520
Query: 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 299
G L G+++R+ IAR LV P +L +DE LD+ S ++ L K A G T
Sbjct: 521 GERGAQ--LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AREGRT 577
Query: 300 LLF------TINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPS 353
+ T+ + D I G I++ +
Sbjct: 578 TIVIAHRLSTVRNA--------DVIAGFDGGV----------------------IVEQGN 607
Query: 354 DHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMIL 413
L + +++ + + + + + + S+ T
Sbjct: 608 HDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKS 667
Query: 414 RLTEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSG 473
+ S +A WR L + S EW Y+ + + +I G +
Sbjct: 668 ICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAII----NGGLQPA 723
Query: 474 LGHSLSSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKTYASEESNMHSGALVFLLGQLL 533
S VV N + + +L+FL+ ++
Sbjct: 724 FSVIFSKVV------------GVFTNGGPPETQRQNSNLF----------SLLFLILGII 761
Query: 534 SSIPFLFLISISSSLVFYFLVGLRDE-FSLLMYFVLNFF--------------------- 571
S I F LR F ++ +++F
Sbjct: 762 SFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQV 821
Query: 572 -------MCLLVNEGLMLVVASIWKDVY-WSILTLISVHVV-MMLSAGYFRIR 615
+ ++ L I +Y W LTL+ + +V ++ AG ++
Sbjct: 822 KGATGSRLAVIFQNIANLGTGIIISLIYGWQ-LTLLLLAIVPIIAIAGVVEMK 873
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 56/218 (25%), Positives = 89/218 (40%), Gaps = 58/218 (26%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAK-SEMPYGSY----G 185
G ++G + GKST+++ + R Y G VF++G + ++ G
Sbjct: 1058 KGQTLALVGSSGCGKSTVVQLLE-------RFYDPMAGSVFLDGKEIKQLNVQWLRAQLG 1110
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA-----------MSLSDY 234
V +E L ++ E + Y + V + I SL D
Sbjct: 1111 IVSQEPILF-DCSIAENIAYGD---------NSRVVSYEEIVRAAKEANIHQFIDSLPDK 1160
Query: 235 ANKLIGGHCYMKG--LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292
N +G KG L G+++R+ IAR LV +PH+L +DE LD+ S ++ L K
Sbjct: 1161 YNTRVG----DKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK 1216
Query: 293 LASTGCTL------LFTINQSSTEVFGLFDRICLLSNG 324
A G T L TI Q++ D I ++ NG
Sbjct: 1217 -AREGRTCIVIAHRLSTI-QNA-------DLIVVIQNG 1245
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 9e-06
Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 64/220 (29%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAK-SEMPYGSY----G 185
G + I+G + SGKSTL + I R Y G+V ++G + G
Sbjct: 34 QGEVIGIVGRSGSGKSTLTKLI-------QRFYIPENGQVLIDGHDLALADPNWLRRQVG 86
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
V ++ L+ ++ + + + + + + A KL G H ++
Sbjct: 87 VVLQDNVLLNR-SIIDNISLA-----------NPGMSVEKVIY------AAKLAGAHDFI 128
Query: 246 KGLP------CGER---------RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290
L GE+ +R+ IAR LV P +L DE LD S ++M +
Sbjct: 129 SELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 188
Query: 291 KKLASTGCTLLF------TINQSSTEVFGLFDRICLLSNG 324
K+ G T++ T+ + DRI ++ G
Sbjct: 189 HKIC-KGRTVIIIAHRLSTVKNA--------DRIIVMEKG 219
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 42/209 (20%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAK-SEMPYGSY----G 185
PG ++GP+ +GKST+LR + R Y G + ++G S++ S G
Sbjct: 79 PGQTLALVGPSGAGKSTILRLLF-------RFYDISSGCIRIDGQDISQVTQASLRSHIG 131
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
V ++T L T+ + + Y G + VE A A + D G+
Sbjct: 132 VVPQDTVLFND-TIADNIRY-------GRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQ 183
Query: 246 KG-----LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300
G L GE++RV IAR ++ P ++ +DE LD+ + + +L K+ + T+
Sbjct: 184 VGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTI 243
Query: 301 -----LFTINQSSTEVFGLFDRICLLSNG 324
L T+ + D+I ++ +G
Sbjct: 244 VVAHRLSTVVNA--------DQILVIKDG 264
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 71/267 (26%), Positives = 115/267 (43%), Gaps = 44/267 (16%)
Query: 112 TVTIKG-KRRYSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMY 167
V ++ +R+ + V N G V++GP+ GK+T LR IAG L P R+Y
Sbjct: 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPTEGRIY 69
Query: 168 -GEVFVNGAKSE-----MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF-CQRKN 220
G+ V + M + SY + +TV E + + L++ F +
Sbjct: 70 FGDRDVTYLPPKDRNISMVFQSYA-------VWPHMTVYENIAFP--LKIKKFPKDEIDK 120
Query: 221 VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280
V A + + + N+ Y L G+R+RV +AR +V+ P VL +DEPL +LD
Sbjct: 121 RVRWAAELLQIEELLNR------YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD- 173
Query: 281 VSALL---MMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335
A L M +KKL T ++ T +Q E + DRI +++ G L G
Sbjct: 174 --AKLRVAMRAEIKKLQQKLKVTTIYVTHDQ--VEAMTMGDRIAVMNRGQLLQIGSPTEV 229
Query: 336 LQHFSN---AGFPCPIMQSPSDHFLRA 359
++ A F + +P + L
Sbjct: 230 YLRPNSVFVATF----IGAPEMNILEV 252
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 56/229 (24%), Positives = 98/229 (42%), Gaps = 37/229 (16%)
Query: 112 TVTIKG-KRRYSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMY 167
++ + K+ + K V + G ++GP+ GK+T L +AG + P S +Y
Sbjct: 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG-IYKPTSGEIY 61
Query: 168 -GEVFVNGAKSE-----MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF-CQRKN 220
+V VN + M + +Y L +TV E + + L+ + +
Sbjct: 62 FDDVLVNDIPPKYREVGMVFQNYA-------LYPHMTVFENIAFP--LRARRISKDEVEK 112
Query: 221 VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280
V + + + + ++ L G+++RV +AR LV +P VL DEPL +LD
Sbjct: 113 RVVEIARKLLIDNLLDR------KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD- 165
Query: 281 VSALL---MMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRICLLSNG 324
A L M +K L G T ++ T +Q E + RI + + G
Sbjct: 166 --ANLRMIMRAEIKHLQQELGITSVYVTHDQ--AEAMTMASRIAVFNQG 210
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 49/271 (18%), Positives = 93/271 (34%), Gaps = 71/271 (26%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
G + + ++++ +I +V ++G SGKSTLL A RL +
Sbjct: 32 GGNAILENISFSISPG----QRVG--------------LLGRTGSGKSTLLSAFL-RLLN 72
Query: 163 SARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ--RKN 220
+ GE+ ++G I R+ + Q F RKN
Sbjct: 73 TE---GEIQIDG--------------VSWDSITLEQWRKAF--GVIPQKVFIFSGTFRKN 113
Query: 221 V----------VEDAIHAMSLSDYANKLIGG---HCYMKG--LPCGERRRVRIARELVMR 265
+ + + L + G G L G ++ + +AR ++ +
Sbjct: 114 LDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK 173
Query: 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325
+L +DEP HLD V+ ++ TLK+ A CT++ + + D+ ++
Sbjct: 174 AKILLLDEPSAHLDPVTYQIIRRTLKQ-AFADCTVILCEARIEAML--ECDQFLVIEENK 230
Query: 326 TLFFGETLACLQHFSNAGFPCPIMQSPSDHF 356
+ + P+D F
Sbjct: 231 VRQYDS-------------ILELYHYPADRF 248
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 63/309 (20%), Positives = 105/309 (33%), Gaps = 86/309 (27%)
Query: 51 WEDTDVEVRVEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKD 110
WE+ E+ + ++ N T+ SLS N L +P L KD
Sbjct: 14 WEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVL-----------------KD 56
Query: 111 LTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV 170
+ I+ G + + G +GK++LL I G L S G++
Sbjct: 57 INFKIE------------------RGQLLAVAGSTGAGKTSLLMMIMGELEPSE---GKI 95
Query: 171 FVNGAKSEMPYGSYGFVERETTLIGSLTVRE---------YLYYSALLQLPGFFCQRKNV 221
+G S S+ I T++E Y Y
Sbjct: 96 KHSGRISFCSQNSW---------IMPGTIKENIIGVSYDEYRY----------------- 129
Query: 222 VEDAIHAMSLSDYANKLIGGHCYMKG-----LPCGERRRVRIARELVMRPHVLFIDEPLY 276
I A L + +K + G L G+R R+ +AR + + +D P
Sbjct: 130 -RSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFG 188
Query: 277 HLDS-VSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG---ET 332
+LD + + KL + +L T ++ E D+I +L G++ F+G E
Sbjct: 189 YLDVLTEKEIFESCVCKLMANKTRILVT-SK--MEHLKKADKILILHEGSSYFYGTFSEL 245
Query: 333 LACLQHFSN 341
FS+
Sbjct: 246 QNLRPDFSS 254
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 7e-05
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 30/153 (19%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSYGFVERETTL 193
G + ++G +GK+T L AIAG + G++ NG + P ++ L
Sbjct: 31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQK---GKIIFNGQDITNKP--AHVINRMGIAL 85
Query: 194 I-------GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM-----SLSDYANKLIGG 241
+ LTV E L + + + K ++ + + L + +L G
Sbjct: 86 VPEGRRIFPELTVYEN------LMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGG- 138
Query: 242 HCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274
+ G GE++ + I R L+ RP +L +DEP
Sbjct: 139 --TLSG---GEQQMLAIGRALMSRPKLLMMDEP 166
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 70/273 (25%), Positives = 115/273 (42%), Gaps = 50/273 (18%)
Query: 112 TVTIKG-KRRYSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMY 167
V + + + + V+ + G +++GP+ GK+T LR IAG L P ++Y
Sbjct: 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG-LEEPSRGQIY 61
Query: 168 -GEVFVNGAKSE-----------MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF 215
G+ V + M + SY L +TV + + + L+L
Sbjct: 62 IGDKLVADPEKGIFVPPKDRDIAMVFQSYA-------LYPHMTVYDNIAFP--LKLRKVP 112
Query: 216 -CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274
+ V + + L++ N+ + L G+R+RV + R +V +P V +DEP
Sbjct: 113 RQEIDQRVREVAELLGLTELLNR------KPRELSGGQRQRVALGRAIVRKPQVFLMDEP 166
Query: 275 LYHLDSVSALL---MMVTLKKL-ASTGCTLLF-TINQSSTEVFGLFDRICLLSNGNTLFF 329
L +LD A L M LKKL G T ++ T +Q E + DRI +++ G
Sbjct: 167 LSNLD---AKLRVRMRAELKKLQRQLGVTTIYVTHDQ--VEAMTMGDRIAVMNRGVLQQV 221
Query: 330 GETLACLQHFSN---AGFPCPIMQSPSDHFLRA 359
G +N AGF + SP +FL A
Sbjct: 222 GSPDEVYDKPANTFVAGF----IGSPPMNFLDA 250
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 47/219 (21%), Positives = 82/219 (37%), Gaps = 61/219 (27%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY----GEVFVNGAK-SEMPYGSY----G 185
P ++ GP+ GKST+ + R Y GE+ ++G + ++ G
Sbjct: 27 PNSIIAFAGPSGGGKSTIFSLL-------ERFYQPTAGEITIDGQPIDNISLENWRSQIG 79
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
FV +++ ++ T+RE L Y + ++ + L ++
Sbjct: 80 FVSQDSAIMAG-TIRENLTYG----------LEGDYTDEDLWQ------VLDLAFARSFV 122
Query: 246 KGLP------CGER---------RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290
+ +P GER +R+ IAR + P +L +DE LDS S ++ L
Sbjct: 123 ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 291 KKLASTGCTL-----LFTINQSSTEVFGLFDRICLLSNG 324
L TL L TI + D+I + G
Sbjct: 183 DSLMKGRTTLVIAHRLSTIVDA--------DKIYFIEKG 213
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 43/212 (20%), Positives = 79/212 (37%), Gaps = 49/212 (23%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G + + G +GK++LL I G L G++ +G S + S + + I
Sbjct: 33 RGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSGRIS---FCS------QFSWI 80
Query: 195 GSLTVREYLYYSALLQLPGFFCQRKNVV----------EDAIHAMSLSDYANKLIGGHCY 244
T++E N++ I A L + +K
Sbjct: 81 MPGTIKE------------------NIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNI 122
Query: 245 MKG-----LPCGERRRVRIARELVMRPHVLFIDEPLYHLDS-VSALLMMVTLKKLASTGC 298
+ G L G+R R+ +AR + + +D P +LD + + KL +
Sbjct: 123 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 182
Query: 299 TLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
+L T ++ E D+I +L G++ F+G
Sbjct: 183 RILVT-SK--MEHLKKADKILILHEGSSYFYG 211
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 4e-04
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159
+DL +I G+ ++K N G + +MGP +GKSTL + +AG
Sbjct: 7 RDLWASIDGE-----TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 6e-04
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159
KDL V+++ K +++ + PG + IMGP SGKSTL +AGR
Sbjct: 24 KDLHVSVEDK-----AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 723 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.98 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.97 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.96 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.96 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.96 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.96 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.95 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.94 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.91 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.91 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.9 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.9 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.88 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.87 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.86 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.85 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.85 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.84 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.83 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.81 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.81 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.8 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.8 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.8 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.79 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.79 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.78 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.78 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.77 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.76 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.76 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.75 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.75 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.74 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.74 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.74 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.74 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.73 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.72 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.71 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.69 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.68 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.68 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.68 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.66 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.64 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.64 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.64 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.62 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.61 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.58 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.58 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.57 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.56 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.56 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.53 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.5 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.49 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.49 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.49 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.44 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.44 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.43 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.39 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.39 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.39 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.38 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.38 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.36 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.36 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.34 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.32 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.32 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.31 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.31 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.29 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.28 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.28 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.27 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.26 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.24 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.19 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.16 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.15 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.15 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.1 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.04 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.03 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.02 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.01 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.0 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.97 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.95 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.95 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.93 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.89 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.8 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.8 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.79 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.78 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.77 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.63 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.62 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.59 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.54 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.46 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.44 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.39 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.34 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.3 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.3 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.28 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 98.21 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.21 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.2 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.16 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.12 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.07 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.04 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.03 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.01 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.99 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.97 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.96 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.95 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.93 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.91 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.9 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.86 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.85 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.84 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.84 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.79 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.78 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.7 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.68 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.64 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.63 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.63 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 97.62 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.6 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.58 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.56 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.55 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.54 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.53 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.53 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.52 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.48 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.45 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.4 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.38 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.35 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.34 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.34 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.32 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.29 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 97.29 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.24 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.2 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.16 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.12 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 97.11 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.03 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.01 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.0 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.97 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.96 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.95 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.92 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.87 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.84 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.84 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.84 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.82 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.77 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.75 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.75 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.73 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.71 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 96.71 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.7 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.68 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.65 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.6 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 96.57 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.57 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.55 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.54 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.53 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 96.5 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.47 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.42 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.36 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.36 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.33 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.33 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.32 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.28 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.27 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.21 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.2 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.16 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.05 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.03 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.02 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 96.02 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.99 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.95 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.9 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.89 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.87 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.86 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 95.82 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.82 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 95.8 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.78 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 95.78 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.76 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 95.74 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.73 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 95.69 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.63 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.6 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 95.59 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 95.57 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 95.56 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 95.56 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.56 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 95.55 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.52 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.51 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 95.43 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 95.42 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.39 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 95.23 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 95.22 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 95.2 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 95.19 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 95.15 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.13 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 95.11 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.09 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.06 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 95.06 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 95.04 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 95.04 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 95.03 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.02 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 95.01 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 95.01 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 94.98 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 94.93 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 94.93 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 94.92 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 94.92 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 94.91 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 94.9 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 94.89 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 94.88 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 94.88 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 94.87 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 94.86 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 94.83 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 94.83 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 94.82 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 94.82 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 94.8 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 94.78 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 94.75 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 94.74 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 94.74 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 94.73 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 94.73 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 94.73 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 94.71 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 94.7 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 94.69 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 94.67 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 94.66 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 94.65 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 94.65 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 94.65 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 94.64 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 94.62 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 94.6 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 94.57 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 94.56 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 94.55 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 94.55 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 94.53 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 94.49 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 94.47 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 94.47 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 94.46 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 94.46 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 94.46 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 94.46 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 94.44 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 94.43 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 94.41 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 94.41 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 94.4 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 94.39 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 94.36 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 94.36 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 94.34 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 94.33 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 94.23 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 94.21 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 94.21 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 94.19 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 94.17 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 94.16 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 94.15 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 94.13 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 94.12 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 94.04 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 94.03 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 94.0 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 94.0 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 93.99 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 93.99 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 93.98 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 93.98 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 93.98 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 93.97 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 93.97 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 93.94 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 93.91 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 93.91 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 93.89 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 93.88 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 93.86 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 93.86 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 93.85 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 93.82 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 93.81 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 93.8 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 93.77 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 93.74 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 93.72 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 93.72 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 93.69 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 93.69 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 93.68 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 93.68 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 93.67 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 93.66 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 93.65 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 93.65 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 93.63 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 93.63 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 93.62 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 93.6 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 93.6 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 93.59 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 93.58 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 93.57 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 93.54 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 93.54 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 93.54 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 93.53 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 93.52 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 93.51 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 93.51 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 93.51 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 93.51 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 93.5 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 93.5 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 93.49 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.49 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 93.47 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 93.47 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 93.45 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 93.43 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 93.42 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 93.41 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 93.4 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 93.36 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 93.33 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.33 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 93.3 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 93.28 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 93.28 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 93.27 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 93.25 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.22 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 93.2 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 93.15 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 93.13 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 93.1 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 93.09 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 93.09 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 93.04 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 93.03 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 92.98 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 92.97 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 92.95 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 92.95 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 92.94 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 92.94 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 92.94 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 92.89 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 92.78 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 92.78 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 92.78 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 92.74 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 92.68 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 92.63 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 92.51 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 92.5 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 92.43 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 92.41 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 92.35 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 92.34 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 92.28 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 92.27 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 92.2 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 92.19 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 92.09 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 92.04 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 92.02 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 91.99 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 91.92 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 91.81 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 91.43 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 91.3 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 91.29 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 91.22 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 91.1 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 90.84 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 90.73 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 90.71 | |
| 1knx_A | 312 | Probable HPR(Ser) kinase/phosphatase; HPR kinase, | 90.67 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 90.55 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 89.98 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 90.5 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 90.47 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 90.43 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 90.42 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 90.41 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 90.4 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-48 Score=417.64 Aligned_cols=222 Identities=21% Similarity=0.264 Sum_probs=194.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++||++.|..+. ....+|+|||+++++||++||+||||||||||+|+|+|+++|+ +|+|.++|+++...
T Consensus 23 ~mi~v~~ls~~y~~~~-~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 23 HMIKLSNITKVFHQGT-RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSES 98 (366)
T ss_dssp CCEEEEEEEEEEECSS-SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHH
T ss_pred ceEEEEeEEEEeCCCC-CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHH
Confidence 3589999999996421 2356999999999999999999999999999999999999997 49999999986421
Q ss_pred -----CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004932 181 -----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
++.+|||+|++.+++.+||+||+.++...... ...+.+++++++++.+||.+.+++. +.+||||||||
T Consensus 99 ~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~-~~~~~~~~v~~lL~~vgL~~~~~~~------~~~LSGGqkQR 171 (366)
T 3tui_C 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT-PKDEVKRRVTELLSLVGLGDKHDSY------PSNLSGGQKQR 171 (366)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTCGGGTTCC------TTTSCHHHHHH
T ss_pred HHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchHhcCC------hhhCCHHHHHH
Confidence 24699999999999999999999998765321 1223567899999999999887764 55999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|+|||||+.+|++|||||||||||+.++..++++|+++++ .|.|||+++|+. .++.++||||++|++|++++.|++++
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~e 250 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSE 250 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999985 499999988876 57889999999999999999999998
Q ss_pred HHH
Q 004932 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
++.
T Consensus 251 v~~ 253 (366)
T 3tui_C 251 VFS 253 (366)
T ss_dssp HHS
T ss_pred HHh
Confidence 764
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-47 Score=416.58 Aligned_cols=217 Identities=28% Similarity=0.398 Sum_probs=193.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (723)
.++++||++.|. ++.+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~yg-----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~ 74 (381)
T 3rlf_A 3 SVQLQNVTKAWG-----EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAE 74 (381)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGG
T ss_pred EEEEEeEEEEEC-----CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHH
Confidence 489999999993 457999999999999999999999999999999999999987 4999999998542 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.+|||+|+..++|.+||+||+.|+...+. ....+.+++++++++.++|.+..++.+ ++|||||||||+||||
T Consensus 75 r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~~~~r~p------~~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAG-AKKEVINQRVNQVAEVLQLAHLLDRKP------KALSGGQRQRVAIGRT 147 (381)
T ss_dssp SCEEEECTTCCCCTTSCHHHHHTHHHHHTT-CCHHHHHHHHHHHHHHTTCGGGTTCCG------GGSCHHHHHHHHHHHH
T ss_pred CCEEEEecCCcCCCCCCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCchhhcCCh------hHCCHHHHHHHHHHHH
Confidence 579999999999999999999999876542 112235678999999999999887754 5999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|+.+|++|||||||||||+..+.++.+.|+++.++ |+|+|+++|+. .++..+||||++|++|+++..|+++++.+
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999999999999999999999999754 99999988876 58999999999999999999999999864
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=415.99 Aligned_cols=217 Identities=22% Similarity=0.323 Sum_probs=190.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC----CC-
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS----EM- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~----~~- 179 (723)
.++++||++.|. ++.+|+|||+.+++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++ ..
T Consensus 4 ~l~i~~ls~~y~-----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~ 75 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-----NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNL 75 (359)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBC
T ss_pred EEEEEeEEEEEC-----CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECccccccc
Confidence 489999999993 457999999999999999999999999999999999999997 49999999875 11
Q ss_pred --CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004932 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
..+.+|||+|+..++|.+||+||+.|+...+.. ...+.+++++++++.+||.+.+++.+ .+|||||||||+
T Consensus 76 ~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~-~~~~~~~~v~~~l~~~gL~~~~~r~~------~~LSGGq~QRVa 148 (359)
T 3fvq_A 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKG-RTAQERQRIEAMLELTGISELAGRYP------HELSGGQQQRAA 148 (359)
T ss_dssp CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSC-CSHHHHHHHHHHHHHHTCGGGTTSCG------GGSCHHHHHHHH
T ss_pred chhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHcCCchHhcCCh------hhCCHHHHHHHH
Confidence 135699999999999999999999987543211 11235678999999999999888755 499999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
|||||+.+|++|||||||||||+..+.++++.|+++. +.|+|+|+++|+. .++..+||||++|++|+++..|+++++.
T Consensus 149 lArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 149 LARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHHHHH
Confidence 9999999999999999999999999999999888876 5699999988876 5889999999999999999999999986
Q ss_pred H
Q 004932 337 Q 337 (723)
Q Consensus 337 ~ 337 (723)
.
T Consensus 228 ~ 228 (359)
T 3fvq_A 228 R 228 (359)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-47 Score=398.77 Aligned_cols=217 Identities=24% Similarity=0.254 Sum_probs=189.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++||++.|. ++.+|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++...
T Consensus 6 ~l~i~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 77 (262)
T 1b0u_A 6 KLHVIDLHKRYG-----GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKD 77 (262)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTT
T ss_pred eEEEeeEEEEEC-----CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccccccc
Confidence 489999999993 357999999999999999999999999999999999999987 4999999987641
Q ss_pred -------------CCceEEEEcCCCccCCCCCHHHHHHHHH-HhcCCCccchHHHHHHHHHHHcCCchH-hhhhhcCCCC
Q 004932 180 -------------PYGSYGFVERETTLIGSLTVREYLYYSA-LLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCY 244 (723)
Q Consensus 180 -------------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~-~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~ 244 (723)
.++.++||+|++.+++.+||+||+.++. ... .....+.+++++++++.+||.+. .++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~----- 151 (262)
T 1b0u_A 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL-GLSKHDARERALKYLAKVGIDERAQGKYP----- 151 (262)
T ss_dssp SSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----
T ss_pred ccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc-CCCHHHHHHHHHHHHHHcCCCchhhcCCc-----
Confidence 0235999999999999999999999864 222 11112245678999999999988 87755
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCC
Q 004932 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (723)
Q Consensus 245 ~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (723)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+. .++..+||+|++|++|
T Consensus 152 -~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G 229 (262)
T 1b0u_A 152 -VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQG 229 (262)
T ss_dssp -GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH-HHHHHHCSEEEEEETT
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 49999999999999999999999999999999999999999999999987799999988876 5788899999999999
Q ss_pred eEEEEeChhHHHH
Q 004932 325 NTLFFGETLACLQ 337 (723)
Q Consensus 325 ~iv~~G~~~~~~~ 337 (723)
++++.|+++++.+
T Consensus 230 ~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 230 KIEEEGDPEQVFG 242 (262)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEeCCHHHHHh
Confidence 9999999988754
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-47 Score=392.44 Aligned_cols=218 Identities=28% Similarity=0.325 Sum_probs=185.0
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (723)
++++||++.|.++. ..+.+|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 2 l~~~~l~~~y~~~~-~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 2 VKLKNVTKTYKMGE-EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp EEEEEEEEEEEETT-EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHH
T ss_pred EEEEEEEEEeCCCC-cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHH
Confidence 68999999996321 1346999999999999999999999999999999999999987 49999999876421
Q ss_pred ----CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCC--ccchHHHHHHHHHHHcCCchHh-hhhhcCCCCCCCCCHHHH
Q 004932 181 ----YGSYGFVERETTLIGSLTVREYLYYSALLQLPG--FFCQRKNVVEDAIHAMSLSDYA-NKLIGGHCYMKGLPCGER 253 (723)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~~~~-~~~ig~~~~~~~LSGGer 253 (723)
++.++||+|++.+++.+||+||+.++....... ...+..+++.++++.++|.+.. ++. +.+||||||
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~LSgGq~ 151 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK------PNQLSGGQQ 151 (235)
T ss_dssp HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC------GGGSCHHHH
T ss_pred HHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC------hhhCCHHHH
Confidence 125999999999999999999999876543211 1122456788999999998753 654 459999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
|||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|++. +.++||+|++|++|+++..+++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~ 229 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKL 229 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcCh
Confidence 9999999999999999999999999999999999999999865 999999998874 4589999999999999999987
Q ss_pred hHH
Q 004932 333 LAC 335 (723)
Q Consensus 333 ~~~ 335 (723)
+++
T Consensus 230 ~~~ 232 (235)
T 3tif_A 230 RGF 232 (235)
T ss_dssp C--
T ss_pred hhh
Confidence 764
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-47 Score=398.05 Aligned_cols=217 Identities=24% Similarity=0.305 Sum_probs=189.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--C-C-
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--M-P- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~--~-~- 180 (723)
.++++||++.|. ++++|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++.. . .
T Consensus 24 ~l~i~~l~~~y~-----~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~ 95 (263)
T 2olj_A 24 MIDVHQLKKSFG-----SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNL 95 (263)
T ss_dssp SEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCH
T ss_pred eEEEEeEEEEEC-----CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccH
Confidence 489999999993 357999999999999999999999999999999999999987 499999998763 1 1
Q ss_pred ---CceEEEEcCCCccCCCCCHHHHHHHHH-HhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH
Q 004932 181 ---YGSYGFVERETTLIGSLTVREYLYYSA-LLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (723)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~-~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (723)
++.++||+|++.+++.+||+||+.++. ... .....+.+++++++++.+||.+..++.+ .+|||||||||
T Consensus 96 ~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~------~~LSgGqkQRv 168 (263)
T 2olj_A 96 NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR-KWPREKAEAKAMELLDKVGLKDKAHAYP------DSLSGGQAQRV 168 (263)
T ss_dssp HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS-CCCHHHHHHHHHHHHHHTTCGGGTTSCG------GGSCHHHHHHH
T ss_pred HHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCchHhcCCh------hhCCHHHHHHH
Confidence 235999999999999999999999864 222 1111224567899999999998887755 49999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 257 ~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+. .++.++||++++|++|++++.|+++++.
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 169 AIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999987799999988876 5788899999999999999999998875
Q ss_pred H
Q 004932 337 Q 337 (723)
Q Consensus 337 ~ 337 (723)
+
T Consensus 248 ~ 248 (263)
T 2olj_A 248 D 248 (263)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-47 Score=399.03 Aligned_cols=218 Identities=23% Similarity=0.313 Sum_probs=189.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++||++.|.+ ...+|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++...
T Consensus 7 ~l~i~~ls~~y~~----~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~ 79 (275)
T 3gfo_A 7 ILKVEELNYNYSD----GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGI 79 (275)
T ss_dssp EEEEEEEEEECTT----SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHH
T ss_pred EEEEEEEEEEECC----CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccH
Confidence 5899999999942 245999999999999999999999999999999999999987 49999999986321
Q ss_pred ---CceEEEEcCCC-ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH
Q 004932 181 ---YGSYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (723)
Q Consensus 181 ---~~~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (723)
++.+|||+|++ ..+..+||+||+.++..... ....+.+++++++++.+||.+..++.++ +|||||||||
T Consensus 80 ~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~------~LSgGqkQRv 152 (275)
T 3gfo_A 80 MKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK-LPEDEIRKRVDNALKRTGIEHLKDKPTH------CLSFGQKKRV 152 (275)
T ss_dssp HHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHTTCGGGTTSBGG------GSCHHHHHHH
T ss_pred HHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCchhhcCCcc------cCCHHHHHHH
Confidence 24699999986 33447899999999865421 1122345679999999999988877554 9999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 257 ~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
+|||||+.+|++|||||||+|||+.++..++++|++++ ++|+|||+++|+.. ++.++||||++|++|++++.|+++++
T Consensus 153 ~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~G~i~~~g~~~~~ 231 (275)
T 3gfo_A 153 AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEV 231 (275)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999998 67999999999874 78889999999999999999999987
Q ss_pred HH
Q 004932 336 LQ 337 (723)
Q Consensus 336 ~~ 337 (723)
.+
T Consensus 232 ~~ 233 (275)
T 3gfo_A 232 FA 233 (275)
T ss_dssp TH
T ss_pred hc
Confidence 54
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=391.68 Aligned_cols=219 Identities=26% Similarity=0.309 Sum_probs=191.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++||++.|. ++.+|+|||+.+++||+++|+||||||||||||+|+|+++|+ +|+|.++|++....
T Consensus 14 ~~l~i~~l~~~y~-----~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~ 85 (256)
T 1vpl_A 14 GAVVVKDLRKRIG-----KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHE 85 (256)
T ss_dssp CCEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHH
T ss_pred CeEEEEEEEEEEC-----CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHH
Confidence 3589999999993 357999999999999999999999999999999999999987 49999999876421
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHH
Q 004932 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (723)
++.++|++|++.+++.+||+||+.+...... ....+.+++++++++.+||.+..++.++ +|||||||||+||
T Consensus 86 ~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~~------~LSgGq~qRv~lA 158 (256)
T 1vpl_A 86 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA-SSSSEIEEMVERATEIAGLGEKIKDRVS------TYSKGMVRKLLIA 158 (256)
T ss_dssp HHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHCCGGGGGSBGG------GCCHHHHHHHHHH
T ss_pred HhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC-CChHHHHHHHHHHHHHCCCchHhcCChh------hCCHHHHHHHHHH
Confidence 2469999999999999999999988654321 1111234678999999999988887554 9999999999999
Q ss_pred HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHH
Q 004932 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (723)
Q Consensus 260 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (723)
|||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++ .++..+||++++|++|++++.|+++++.+.
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKER 236 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999999999987899999988886 578889999999999999999999887653
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-47 Score=385.67 Aligned_cols=210 Identities=25% Similarity=0.278 Sum_probs=183.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++||++.|. ++++|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 4 ~l~~~~l~~~y~-----~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 75 (224)
T 2pcj_A 4 ILRAENIKKVIR-----GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKE 75 (224)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHH
T ss_pred EEEEEeEEEEEC-----CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHH
Confidence 489999999993 357999999999999999999999999999999999999987 49999999876421
Q ss_pred -----CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004932 181 -----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
.+.++|++|++.+++.+||+||+.++..... ....+.+++++++++.+||.+..++.+ .+||||||||
T Consensus 76 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~qr 148 (224)
T 2pcj_A 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG-KPKKEAKERGEYLLSELGLGDKLSRKP------YELSGGEQQR 148 (224)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHTTCTTCTTCCG------GGSCHHHHHH
T ss_pred HHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHcCCchhhhCCh------hhCCHHHHHH
Confidence 1459999999999999999999998764431 111224567899999999998887755 4999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
|+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++ ..+ ++||++++|++|++++.|+
T Consensus 149 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 149 VAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER-ELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHH-HhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999999999999987799999988886 355 8999999999999999986
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-47 Score=395.64 Aligned_cols=215 Identities=20% Similarity=0.238 Sum_probs=187.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++||++.|. ++++|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 7 ~l~i~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (257)
T 1g6h_A 7 ILRTENIVKYFG-----EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAE 78 (257)
T ss_dssp EEEEEEEEEEET-----TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHH
T ss_pred EEEEeeeEEEEC-----CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHH
Confidence 589999999993 357999999999999999999999999999999999999987 49999999886421
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHh-cCC-----------CccchHHHHHHHHHHHcCCchHhhhhhcCCCCCC
Q 004932 181 --YGSYGFVERETTLIGSLTVREYLYYSALL-QLP-----------GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~-~~~-----------~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 246 (723)
++.++||+|++.+++.+||+||+.++... ... ......+++++++++.+||.+..++.++
T Consensus 79 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------ 152 (257)
T 1g6h_A 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG------ 152 (257)
T ss_dssp HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG------
T ss_pred HHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCch------
Confidence 23599999999999999999999875432 111 1111245678999999999988877554
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004932 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 247 ~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++. ++.++||++++|++|++
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i 231 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFNGQI 231 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEETTEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999878999999999874 77889999999999999
Q ss_pred EEEeChhH
Q 004932 327 LFFGETLA 334 (723)
Q Consensus 327 v~~G~~~~ 334 (723)
++.|++++
T Consensus 232 ~~~g~~~~ 239 (257)
T 1g6h_A 232 IAEGRGEE 239 (257)
T ss_dssp EEEEESHH
T ss_pred EEEeCHHH
Confidence 99999887
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-46 Score=405.91 Aligned_cols=219 Identities=25% Similarity=0.376 Sum_probs=192.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---P 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~ 180 (723)
..++++||++.|. +++++|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. .
T Consensus 13 ~~l~~~~l~~~y~----g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~ 85 (355)
T 1z47_A 13 MTIEFVGVEKIYP----GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQ 85 (355)
T ss_dssp EEEEEEEEEECCT----TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGG
T ss_pred ceEEEEEEEEEEc----CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChh
Confidence 4689999999882 1346999999999999999999999999999999999999987 4999999987532 2
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHH
Q 004932 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (723)
++.++||+|+..++|.+||+||+.|+...+. ....+.+++++++++.+||.+.+++.+ .+|||||||||+|||
T Consensus 86 ~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~-~~~~~~~~~v~~~l~~~gL~~~~~r~~------~~LSGGq~QRvalAr 158 (355)
T 1z47_A 86 KRNVGLVFQNYALFQHMTVYDNVSFGLREKR-VPKDEMDARVRELLRFMRLESYANRFP------HELSGGQQQRVALAR 158 (355)
T ss_dssp GSSEEEECGGGCCCTTSCHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHTTCGGGTTSCG------GGSCHHHHHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCChhHhcCCc------ccCCHHHHHHHHHHH
Confidence 3579999999999999999999999865431 111234578999999999999888755 499999999999999
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 261 aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
||+.+|++|||||||+|||+.++.++++.|++++++ |+|+|+++|+. .++..+||||++|++|+++..|+++++.+
T Consensus 159 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 159 ALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp HHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999754 99999988876 57889999999999999999999998864
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=387.77 Aligned_cols=215 Identities=22% Similarity=0.276 Sum_probs=186.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++||++.|. ++++|+|||+.+++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 6 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 77 (240)
T 1ji0_A 6 VLEVQSLHVYYG-----AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHH
T ss_pred eEEEEeEEEEEC-----CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHH
Confidence 589999999993 357999999999999999999999999999999999999987 49999999886421
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcC-CchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004932 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS-LSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
++.++|++|++.+++.+||+||+.++..... ...+.+++++++++.++ |.+..++. +.+|||||||||+
T Consensus 78 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~------~~~LSgGq~qrv~ 149 (240)
T 1ji0_A 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRK--DKEGIKRDLEWIFSLFPRLKERLKQL------GGTLSGGEQQMLA 149 (240)
T ss_dssp HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC--CSSHHHHHHHHHHHHCHHHHTTTTSB------SSSSCHHHHHHHH
T ss_pred HHhCCEEEEecCCccCCCCcHHHHHHHhhhcCC--CHHHHHHHHHHHHHHcccHhhHhcCC------hhhCCHHHHHHHH
Confidence 1349999999999999999999987531111 11224567888999995 87776664 4599999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 150 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 150 IGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999999999999999999999987899999988886 4788999999999999999999988764
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=391.87 Aligned_cols=215 Identities=24% Similarity=0.290 Sum_probs=188.7
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++||++.|. ++.+|+|||+++++||++||+||||||||||+|+|+|+++|++ |+|.++|++....
T Consensus 10 ~~l~~~~l~~~~~-----~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~~~~~~~~ 81 (266)
T 4g1u_C 10 ALLEASHLHYHVQ-----QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSH---GECHLLGQNLNSWQPK 81 (266)
T ss_dssp CEEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSS---CEEEETTEETTTSCHH
T ss_pred ceEEEEeEEEEeC-----CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEECCEECCcCCHH
Confidence 3689999999983 4579999999999999999999999999999999999999975 9999999986432
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
.+.++|++|++.+++.+||+||+.++.... .....+++++++++.++|.+..++.+ .+|||||||||+|
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~QRv~i 152 (266)
T 4g1u_C 82 ALARTRAVMRQYSELAFPFSVSEVIQMGRAPY---GGSQDRQALQQVMAQTDCLALAQRDY------RVLSGGEQQRVQL 152 (266)
T ss_dssp HHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS---CSTTHHHHHHHHHHHTTCSTTTTSBG------GGCCHHHHHHHHH
T ss_pred HHhheEEEEecCCccCCCCCHHHHHHhhhhhc---CcHHHHHHHHHHHHHcCChhHhcCCc------ccCCHHHHHHHHH
Confidence 235899999999888999999998764322 11235677899999999998887755 4999999999999
Q ss_pred HHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004932 259 ARELVM------RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 259 A~aL~~------~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
||||+. +|++|||||||+|||+.++..+++.|++++++ |+|||+++|+. .++.++||||++|++|++++.|+
T Consensus 153 AraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~~g~ 231 (266)
T 4g1u_C 153 ARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDL-NLAALYADRIMLLAQGKLVACGT 231 (266)
T ss_dssp HHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEcC
Confidence 999999 99999999999999999999999999999865 57999987776 57889999999999999999999
Q ss_pred hhHHH
Q 004932 332 TLACL 336 (723)
Q Consensus 332 ~~~~~ 336 (723)
++++.
T Consensus 232 ~~~~~ 236 (266)
T 4g1u_C 232 PEEVL 236 (266)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 98874
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-46 Score=407.22 Aligned_cols=217 Identities=24% Similarity=0.346 Sum_probs=191.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++||++.|. ++.+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~ 74 (372)
T 1g29_1 3 GVRLVDVWKVFG-----EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGI 74 (372)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTE
T ss_pred EEEEEeEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccc
Confidence 488999999993 357999999999999999999999999999999999999987 4999999986421
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004932 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
..+.+|||+|+..++|++||+||+.|+...+.. ...+.+++++++++.+||.+..++.+ .+||||||||
T Consensus 75 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~r~~------~~LSGGq~QR 147 (372)
T 1g29_1 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKV-PRQEIDQRVREVAELLGLTELLNRKP------RELSGGQRQR 147 (372)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHTCGGGTTCCG------GGSCHHHHHH
T ss_pred cCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHCCCchHhcCCc------ccCCHHHHHH
Confidence 235699999999999999999999998654321 11234567999999999999888755 4999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|+|||||+.+|++|||||||||||+.++.++.+.|+++.+ .|.|+|+++|+. .++..+||+|++|++|+++..|++++
T Consensus 148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999975 499999988886 57889999999999999999999998
Q ss_pred HHH
Q 004932 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
+.+
T Consensus 227 l~~ 229 (372)
T 1g29_1 227 VYD 229 (372)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-46 Score=406.58 Aligned_cols=217 Identities=23% Similarity=0.347 Sum_probs=190.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (723)
.++++||++.|. ++.+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~ 74 (359)
T 2yyz_A 3 SIRVVNLKKYFG-----KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKY 74 (359)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred EEEEEEEEEEEC-----CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhh
Confidence 378999999993 357999999999999999999999999999999999999987 4999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.+|||+|+..++|++||+||+.|+...+. ....+.+++++++++.++|.+..++.+ .+|||||||||+||||
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~~~~r~~------~~LSgGq~QRvalArA 147 (359)
T 2yyz_A 75 REVGMVFQNYALYPHMTVFENIAFPLRARR-ISKDEVEKRVVEIARKLLIDNLLDRKP------TQLSGGQQQRVALARA 147 (359)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHGGGSSSC-SHHHHTTHHHHHHHHHTTCGGGTTSCG------GGSCHHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCchHhcCCh------hhCCHHHHHHHHHHHH
Confidence 569999999999999999999988643221 111123467999999999999888755 4999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|+.+|++|||||||||||+.++..+.+.|+++.+ .|.|+|+++|+. .++..+||||++|++|+++..|+++++.+
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999975 499999988886 57889999999999999999999999864
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-46 Score=407.14 Aligned_cols=217 Identities=25% Similarity=0.369 Sum_probs=191.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (723)
.++++||++.|. ++.+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~ 74 (362)
T 2it1_A 3 EIKLENIVKKFG-----NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKD 74 (362)
T ss_dssp CEEEEEEEEESS-----SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred EEEEEeEEEEEC-----CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhH
Confidence 378999999983 357999999999999999999999999999999999999987 4999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.+|||+|+..++|++||+||+.|+...+.. ...+.+++++++++.+||.+..++.+ .+|||||||||+||||
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~r~~------~~LSGGq~QRvalArA 147 (362)
T 2it1_A 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKA-PREEIDKKVREVAKMLHIDKLLNRYP------WQLSGGQQQRVAIARA 147 (362)
T ss_dssp TTEEEECTTCCCCTTSCHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHTTCTTCTTCCG------GGSCHHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchHhhCCh------hhCCHHHHHHHHHHHH
Confidence 5699999999999999999999998654311 11234567999999999998887755 4999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|+.+|++|||||||||||+..+.++.+.|+++++ .|.|+|+++|+. .++..+||||++|++|+++..|+++++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 148 LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp HTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999975 499999988876 57889999999999999999999998864
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-46 Score=406.32 Aligned_cols=217 Identities=24% Similarity=0.337 Sum_probs=190.1
Q ss_pred eEEEEeEEEEEecccccccc--eeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 004932 105 SVVWKDLTVTIKGKRRYSDK--VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~--iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (723)
.++++||++.|. ++. +|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 3 ~l~i~~l~~~y~-----~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~ 74 (353)
T 1oxx_K 3 RIIVKNVSKVFK-----KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGK 74 (353)
T ss_dssp CEEEEEEEEEEG-----GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTE
T ss_pred EEEEEeEEEEEC-----CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECccccc
Confidence 378999999993 346 999999999999999999999999999999999999987 4999999986421
Q ss_pred -----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHH
Q 004932 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (723)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerq 254 (723)
.++.+|||+|+..++|.+||+||+.|+...+. ....+.+++++++++.+||.+..++.+ ++|||||||
T Consensus 75 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~~~~~~~------~~LSGGq~Q 147 (353)
T 1oxx_K 75 LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK-MSKEEIRKRVEEVAKILDIHHVLNHFP------RELSGAQQQ 147 (353)
T ss_dssp ESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS-CCHHHHHHHHHHHHHHTTCGGGTTSCG------GGSCHHHHH
T ss_pred ccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCchHhcCCh------hhCCHHHHH
Confidence 23579999999999999999999988653321 111224567999999999999888755 499999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||+|||||+.+|++|||||||+|||+.++.++.+.|+++++ .|+|+|+++|+. .++..+||||++|++|+++..|+++
T Consensus 148 RvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~ 226 (353)
T 1oxx_K 148 RVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPE 226 (353)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999975 499999988886 5788999999999999999999999
Q ss_pred HHHH
Q 004932 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++.+
T Consensus 227 ~l~~ 230 (353)
T 1oxx_K 227 DLYD 230 (353)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8864
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-46 Score=406.14 Aligned_cols=217 Identities=25% Similarity=0.342 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (723)
.++++||++.|. ++.+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 11 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~ 82 (372)
T 1v43_A 11 EVKLENLTKRFG-----NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKD 82 (372)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred eEEEEEEEEEEC-----CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhh
Confidence 389999999993 357999999999999999999999999999999999999987 4999999987532 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.+|||+|+..++|++||+||+.|+...+. ....+.+++++++++.++|.+.+++.+ .+|||||||||+||||
T Consensus 83 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~~~~r~~------~~LSGGq~QRvalArA 155 (372)
T 1v43_A 83 RNISMVFQSYAVWPHMTVYENIAFPLKIKK-FPKDEIDKRVRWAAELLQIEELLNRYP------AQLSGGQRQRVAVARA 155 (372)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC--C-CCHHHHHHHHHHHHHHTTCGGGTTSCT------TTCCSSCHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCChhHhcCCh------hhCCHHHHHHHHHHHH
Confidence 579999999999999999999988643221 111224567999999999999887754 5999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|+.+|++|||||||||||+..+.++.+.|++++++ |.|+|+++|+. .++..+||||++|++|+++..|+++++..
T Consensus 156 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 156 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999764 99999988886 57889999999999999999999999864
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-46 Score=401.74 Aligned_cols=212 Identities=24% Similarity=0.324 Sum_probs=188.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---Cc
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---YG 182 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---~~ 182 (723)
++++||++.|. ++ +|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++.... ++
T Consensus 2 l~~~~l~~~y~-----~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r 72 (348)
T 3d31_A 2 IEIESLSRKWK-----NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72 (348)
T ss_dssp EEEEEEEEECS-----SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHH
T ss_pred EEEEEEEEEEC-----CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhC
Confidence 68999999983 34 999999999999999999999999999999999999987 49999999886421 24
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004932 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
.+|||+|+..++|.+||+||+.|+...+... +. ++++++++.++|.+..++.+ .+|||||||||+|||||
T Consensus 73 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~---~~-~~v~~~l~~~~L~~~~~~~~------~~LSgGq~QRvalAraL 142 (348)
T 3d31_A 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK---DP-KRVLDTARDLKIEHLLDRNP------LTLSGGEQQRVALARAL 142 (348)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCCC---CH-HHHHHHHHHTTCTTTTTSCG------GGSCHHHHHHHHHHHHT
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCC---HH-HHHHHHHHHcCCchHhcCCh------hhCCHHHHHHHHHHHHH
Confidence 6999999999999999999999986543211 12 67899999999999888755 49999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
+.+|++|||||||+|||+.++.++.+.|+++++ .|+|+|+++|+. .++..+||||++|++|+++..|+++++.+
T Consensus 143 ~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~~ 217 (348)
T 3d31_A 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (348)
T ss_dssp TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999975 599999988876 57889999999999999999999998753
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=381.15 Aligned_cols=211 Identities=24% Similarity=0.328 Sum_probs=183.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (723)
++++||++.|. + +|+|||+.+++ |+++|+||||||||||+|+|+|+++|+ +|+|.++|++... .++
T Consensus 2 l~~~~l~~~y~-----~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 70 (240)
T 2onk_A 2 FLKVRAEKRLG-----N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERR 70 (240)
T ss_dssp CEEEEEEEEET-----T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTS
T ss_pred EEEEEEEEEeC-----C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhC
Confidence 57899999983 1 59999999999 999999999999999999999999987 4999999987532 235
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004932 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
.++|++|++.+++.+||+||+.++.... . ....+++++++++.+||.+..++.+ .+|||||||||+|||||
T Consensus 71 ~i~~v~q~~~l~~~ltv~enl~~~~~~~--~-~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGqkqRv~lAral 141 (240)
T 2onk_A 71 GIGFVPQDYALFPHLSVYRNIAYGLRNV--E-RVERDRRVREMAEKLGIAHLLDRKP------ARLSGGERQRVALARAL 141 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTTCTTS--C-HHHHHHHHHHHHHTTTCTTTTTCCG------GGSCHHHHHHHHHHHHH
T ss_pred cEEEEcCCCccCCCCcHHHHHHHHHHHc--C-CchHHHHHHHHHHHcCCHHHhcCCh------hhCCHHHHHHHHHHHHH
Confidence 6999999999999999999998753211 1 1123567899999999998887755 49999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
+.+|++|||||||+|||+.++..+++.|+++++ +|+|||+++|+. .++..+||++++|++|++++.|+++++.+
T Consensus 142 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999975 499999988886 57889999999999999999999988754
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-45 Score=383.91 Aligned_cols=222 Identities=22% Similarity=0.324 Sum_probs=187.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCc
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYG 182 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~ 182 (723)
.++++||++.|..++...+.+|+|||+.+++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++... .++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhh
Confidence 37899999999411000146999999999999999999999999999999999999987 4999999987531 135
Q ss_pred eEEEEcCCC-ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc--hHhhhhhcCCCCCCCCCHHHHHHHHHH
Q 004932 183 SYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 183 ~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (723)
.++|++|++ .+++.+||+||+.++.....+ ..+.+++++++++.+||. +..++.+ .+|||||||||+||
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~--~~~~~~~~~~~l~~~gl~~~~~~~~~~------~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYP--DRDPVPLVKKAMEFVGLDFDSFKDRVP------FFLSGGEKRRVAIA 150 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTTCT--TSCSHHHHHHHHHHTTCCHHHHTTCCG------GGSCHHHHHHHHHH
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhcCC--HHHHHHHHHHHHHHcCcCCcccccCCh------hhCCHHHHHHHHHH
Confidence 699999995 566789999999885422111 112356789999999998 8887755 49999999999999
Q ss_pred HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHH
Q 004932 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (723)
Q Consensus 260 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (723)
|||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++. .+..+||++++|++|++++.|+++++.+.
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999877999999999874 67789999999999999999999887653
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-45 Score=377.90 Aligned_cols=214 Identities=18% Similarity=0.245 Sum_probs=177.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEeCCCC--
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR--LPHSARMYGEVFVNGAKSEMP-- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~--~~~~~~~~G~I~i~G~~~~~~-- 180 (723)
.++++||++.|. ++.+|+|||+++++||+++|+||||||||||+|+|+|+ ++|+ +|+|.++|++....
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~ 74 (250)
T 2d2e_A 3 QLEIRDLWASID-----GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSP 74 (250)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCH
T ss_pred eEEEEeEEEEEC-----CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCH
Confidence 478999999993 35799999999999999999999999999999999998 5665 59999999876421
Q ss_pred ----CceEEEEcCCCccCCCCCHHHHHHHHHHh--cCCCccchHHHHHHHHHHHcCC-chHhhhhhcCCCCCCC-CCHHH
Q 004932 181 ----YGSYGFVERETTLIGSLTVREYLYYSALL--QLPGFFCQRKNVVEDAIHAMSL-SDYANKLIGGHCYMKG-LPCGE 252 (723)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~--~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~ig~~~~~~~-LSGGe 252 (723)
+..++|++|++.+++.+||+||+.+.... .......+..++++++++.+|| .+..++.++ + |||||
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~------~~LSgGq 148 (250)
T 2d2e_A 75 DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN------EGFSGGE 148 (250)
T ss_dssp HHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTT------CC----H
T ss_pred HHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc------cCCCHHH
Confidence 12489999999999999999999886532 1111111234678899999999 577877554 7 99999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhc-CCEEEEEeCCeEEEEeC
Q 004932 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLFFGE 331 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv~~G~ 331 (723)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++. .+..+ ||++++|++|++++.|+
T Consensus 149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~ 227 (250)
T 2d2e_A 149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMDGRVVATGG 227 (250)
T ss_dssp HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEETTEEEEEES
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEECCEEEEEeC
Confidence 99999999999999999999999999999999999999999777999999999874 66777 59999999999999999
Q ss_pred hh
Q 004932 332 TL 333 (723)
Q Consensus 332 ~~ 333 (723)
++
T Consensus 228 ~~ 229 (250)
T 2d2e_A 228 PE 229 (250)
T ss_dssp HH
T ss_pred HH
Confidence 87
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-45 Score=385.01 Aligned_cols=217 Identities=24% Similarity=0.296 Sum_probs=183.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CC--
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MP-- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~--~~-- 180 (723)
.++++||++.|. ++++|+|||+.+++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++.. ..
T Consensus 21 ~l~~~~l~~~y~-----~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~ 92 (279)
T 2ihy_A 21 LIQLDQIGRMKQ-----GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSA 92 (279)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCH
T ss_pred eEEEEeEEEEEC-----CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCH
Confidence 589999999993 357999999999999999999999999999999999999987 499999998753 11
Q ss_pred ---CceEEEEcCCCccC--CCCCHHHHHHHHHHh--cCCC-ccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHH
Q 004932 181 ---YGSYGFVERETTLI--GSLTVREYLYYSALL--QLPG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (723)
Q Consensus 181 ---~~~~~yv~Q~~~l~--~~lTV~E~l~~~~~~--~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe 252 (723)
++.++|++|++.++ +.+||+||+.++... .... ...+.+++++++++.+||.+..++.++ +|||||
T Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~------~LSgGq 166 (279)
T 2ihy_A 93 ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG------YLSTGE 166 (279)
T ss_dssp HHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGG------GSCHHH
T ss_pred HHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChh------hCCHHH
Confidence 24699999997543 356999999874211 1001 111235678999999999988877554 999999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE--EEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL--LFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tv--i~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|| |+++|+. .++.++||+|++|++|++++.|
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~-~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCG-GGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999998779999 9988886 4678899999999999999999
Q ss_pred ChhHHH
Q 004932 331 ETLACL 336 (723)
Q Consensus 331 ~~~~~~ 336 (723)
+++++.
T Consensus 246 ~~~~~~ 251 (279)
T 2ihy_A 246 AVEDIL 251 (279)
T ss_dssp EHHHHC
T ss_pred CHHHHh
Confidence 987763
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-44 Score=372.97 Aligned_cols=209 Identities=24% Similarity=0.322 Sum_probs=180.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (723)
.++++||++.|.. ++.+|+|+|+.+++||+++|+||||||||||+|+|+|+++|+ +|+|.+ .+.+
T Consensus 4 ~l~i~~l~~~y~~----~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~--------~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA----ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV--------YQSI 68 (253)
T ss_dssp EEEEEEEEEEETT----TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE--------CSCE
T ss_pred eEEEeeEEEEeCC----CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE--------eccE
Confidence 4899999999831 357999999999999999999999999999999999999987 499982 2469
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCC---CccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 185 GFVERETTLIGSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+|++|++.+++.+||+||+.++...... ......+++++++++.+||.+..++.+ .+|||||||||+||||
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~qrv~lAra 142 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF------TSLSGGQRQLILIARA 142 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG------GGSCHHHHHHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh------hhCCHHHHHHHHHHHH
Confidence 9999999999999999999876422111 011123567899999999998887755 4999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
|+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|++ .++.++||++++|++|+ ++.|+++++.
T Consensus 143 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 143 IASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 99999999999999999999999999999999876 99999988886 47788999999999999 9999987763
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-44 Score=381.67 Aligned_cols=216 Identities=23% Similarity=0.339 Sum_probs=183.7
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++||++.|.+ .+.+|+|||+.+++||++||+||||||||||+|+|+|+++|+ +|+|.++|+++...
T Consensus 52 ~~i~~~~vs~~y~~----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~ 124 (306)
T 3nh6_A 52 GRIEFENVHFSYAD----GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQA 124 (306)
T ss_dssp CCEEEEEEEEESST----TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHH
T ss_pred CeEEEEEEEEEcCC----CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHH
Confidence 35999999999952 357999999999999999999999999999999999999987 49999999986432
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHHH
Q 004932 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGER 253 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGer 253 (723)
++.++||+|++.+|+ .||+|||.++.. . ...++++++++.+++.+..+..+.| .....+||||||
T Consensus 125 ~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~----~---~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqr 196 (306)
T 3nh6_A 125 SLRSHIGVVPQDTVLFN-DTIADNIRYGRV----T---AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEK 196 (306)
T ss_dssp HHHHTEEEECSSCCCCS-EEHHHHHHTTST----T---CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHH
T ss_pred HHhcceEEEecCCccCc-ccHHHHHHhhcc----c---CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHH
Confidence 246999999999885 599999976421 1 1245678888889998776655422 134568999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
|||+|||||+.+|+||||||||||||+.++..|++.|+++.+ ++|+|+++|++. .+.. ||+|++|++|++++.|+++
T Consensus 197 QRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~~~~-aD~i~vl~~G~iv~~G~~~ 273 (306)
T 3nh6_A 197 QRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLS-TVVN-ADQILVIKDGCIVERGRHE 273 (306)
T ss_dssp HHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHH-HHHT-CSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChH-HHHc-CCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999864 689999888864 5655 9999999999999999999
Q ss_pred HHHH
Q 004932 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++.+
T Consensus 274 el~~ 277 (306)
T 3nh6_A 274 ALLS 277 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8865
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-44 Score=374.23 Aligned_cols=219 Identities=20% Similarity=0.229 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCCC--
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEMP-- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~--~~~~~~~G~I~i~G~~~~~~-- 180 (723)
.++++||++.|. ++.+|+|||+.+++||+++|+||||||||||+|+|+|+. +|+ +|+|.++|++....
T Consensus 20 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~ 91 (267)
T 2zu0_C 20 MLSIKDLHVSVE-----DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSP 91 (267)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCH
T ss_pred eEEEEeEEEEEC-----CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCH
Confidence 589999999993 357999999999999999999999999999999999984 454 59999999875321
Q ss_pred ----CceEEEEcCCCccCCCCCHHHHHHHHHH-h----cCCC-ccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCC
Q 004932 181 ----YGSYGFVERETTLIGSLTVREYLYYSAL-L----QLPG-FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLP 249 (723)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~-~----~~~~-~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LS 249 (723)
++.++|++|++.+++.+||.|++.+... . ..+. ...+.+++++++++.+||. +..++.++ .+||
T Consensus 92 ~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LS 166 (267)
T 2zu0_C 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN-----VGFS 166 (267)
T ss_dssp HHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT-----TTCC
T ss_pred HHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc-----cCCC
Confidence 1248999999999999999999987542 1 1111 1112346788999999996 46665432 1599
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhc-CCEEEEEeCCeEEE
Q 004932 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLF 328 (723)
Q Consensus 250 GGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv~ 328 (723)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|++ ..+..+ ||++++|++|++++
T Consensus 167 gGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~~d~v~~l~~G~i~~ 245 (267)
T 2zu0_C 167 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVK 245 (267)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSG-GGGGTSCCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCH-HHHHhhcCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999987799999988886 456665 89999999999999
Q ss_pred EeChhHHHH
Q 004932 329 FGETLACLQ 337 (723)
Q Consensus 329 ~G~~~~~~~ 337 (723)
.|+++++..
T Consensus 246 ~g~~~~~~~ 254 (267)
T 2zu0_C 246 SGDFTLVKQ 254 (267)
T ss_dssp EECTTHHHH
T ss_pred EcCHHHHhh
Confidence 999987653
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-44 Score=368.79 Aligned_cols=215 Identities=26% Similarity=0.364 Sum_probs=182.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++||++.|.+ .++.+|+|||+.+++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 7 ~~~~~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~ 80 (247)
T 2ff7_A 7 DITFRNIRFRYKP---DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNW 80 (247)
T ss_dssp EEEEEEEEEESST---TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHH
T ss_pred ceeEEEEEEEeCC---CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHH
Confidence 5899999999831 1357999999999999999999999999999999999999987 49999999886431
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHHHH
Q 004932 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERR 254 (723)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerq 254 (723)
++.++||+|++.+++ .||+||+.++. +. ..+++++++++.+++.+..++.+.| +..+.+|||||||
T Consensus 81 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~~---~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~q 152 (247)
T 2ff7_A 81 LRRQVGVVLQDNVLLN-RSIIDNISLAN----PG---MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQ 152 (247)
T ss_dssp HHHHEEEECSSCCCTT-SBHHHHHTTTC----TT---CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHH
T ss_pred HHhcEEEEeCCCcccc-ccHHHHHhccC----CC---CCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHH
Confidence 246999999998886 69999997641 11 1245678899999998887765311 2345789999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
||+|||||+.+|++|||||||+|||+.++..+++.|++++ +|+|||+++|++. .+ ..||++++|++|++++.|++++
T Consensus 153 Rv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~ 229 (247)
T 2ff7_A 153 RIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS-TV-KNADRIIVMEKGKIVEQGKHKE 229 (247)
T ss_dssp HHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG-GG-TTSSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999995 6999999999874 44 4599999999999999999988
Q ss_pred HH
Q 004932 335 CL 336 (723)
Q Consensus 335 ~~ 336 (723)
+.
T Consensus 230 l~ 231 (247)
T 2ff7_A 230 LL 231 (247)
T ss_dssp HH
T ss_pred HH
Confidence 74
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-44 Score=369.06 Aligned_cols=206 Identities=23% Similarity=0.314 Sum_probs=180.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++||++. .+|+|+|+.+++||+++|+||||||||||||+|+|+++| . |+|.++|++....
T Consensus 4 ~l~~~~l~~~---------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~ 70 (249)
T 2qi9_C 4 VMQLQDVAES---------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATK 70 (249)
T ss_dssp EEEEEEEEET---------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHH
T ss_pred EEEEEceEEE---------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHH
Confidence 4789999863 589999999999999999999999999999999999987 3 9999999875321
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHH
Q 004932 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (723)
++.++|++|++.+++.+||+||+.+.. .... .+++++++++.+||.+..++.+ .+|||||||||+||
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~---~~~~---~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~qrv~lA 138 (249)
T 2qi9_C 71 LALHRAYLSQQQTPPFATPVWHYLTLHQ---HDKT---RTELLNDVAGALALDDKLGRST------NQLSGGEWQRVRLA 138 (249)
T ss_dssp HHHHEEEECSCCCCCTTCBHHHHHHTTC---SSTT---CHHHHHHHHHHTTCGGGTTSBG------GGCCHHHHHHHHHH
T ss_pred HhceEEEECCCCccCCCCcHHHHHHHhh---ccCC---cHHHHHHHHHHcCChhHhcCCh------hhCCHHHHHHHHHH
Confidence 245999999999999999999997641 1111 1567899999999998887755 49999999999999
Q ss_pred HHHhhCCc-------EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004932 260 RELVMRPH-------VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 260 ~aL~~~P~-------lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
|||+.+|+ +|||||||+|||+.++..+.+.|++++++|+|||+++|++ ..+.++||++++|++|++++.|++
T Consensus 139 raL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~ 217 (249)
T 2qi9_C 139 AVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRR 217 (249)
T ss_dssp HHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEEH
T ss_pred HHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999 9999999999999999999999999987799999988876 577889999999999999999998
Q ss_pred hHHH
Q 004932 333 LACL 336 (723)
Q Consensus 333 ~~~~ 336 (723)
+++.
T Consensus 218 ~~~~ 221 (249)
T 2qi9_C 218 EEVL 221 (249)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 7763
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-44 Score=375.29 Aligned_cols=217 Identities=23% Similarity=0.286 Sum_probs=175.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++||++.|.+. ..+.+|+|||+.+++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++...
T Consensus 16 ~l~~~~l~~~y~~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~ 90 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH--PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHY 90 (271)
T ss_dssp CEEEEEEEECCTTC--TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHH
T ss_pred eEEEEEEEEEeCCC--CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHH
Confidence 58999999988421 1257999999999999999999999999999999999999987 49999999875321
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccch-----HHHHHHHHHHHc--CCchHhhhhhcCCCCCCCCCHHH
Q 004932 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ-----RKNVVEDAIHAM--SLSDYANKLIGGHCYMKGLPCGE 252 (723)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~~~~ig~~~~~~~LSGGe 252 (723)
++.++||+|++.+++ .||+||+.++... .. ...+ ....++++++.+ ||.+..++ .+.+|||||
T Consensus 91 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~-~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~------~~~~LSgGq 161 (271)
T 2ixe_A 91 LHTQVAAVGQEPLLFG-RSFRENIAYGLTR-TP-TMEEITAVAMESGAHDFISGFPQGYDTEVGE------TGNQLSGGQ 161 (271)
T ss_dssp HHHHEEEECSSCCCCS-SBHHHHHHTTCSS-CC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCG------GGTTSCHHH
T ss_pred HhccEEEEecCCcccc-ccHHHHHhhhccc-CC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcC------CcCCCCHHH
Confidence 246999999998887 5999999874211 11 1001 112244556666 55555544 345999999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004932 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
||||+|||||+.+|+||||||||+|||+.++..+++.|+++++ +|+|||+++|++. .+. .||+|++|++|++++.|+
T Consensus 162 ~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~-~~~-~~d~v~~l~~G~i~~~g~ 239 (271)
T 2ixe_A 162 RQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS-LAE-RAHHILFLKEGSVCEQGT 239 (271)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH-HHT-TCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999974 5899999888864 554 599999999999999999
Q ss_pred hhHHHH
Q 004932 332 TLACLQ 337 (723)
Q Consensus 332 ~~~~~~ 337 (723)
++++.+
T Consensus 240 ~~~l~~ 245 (271)
T 2ixe_A 240 HLQLME 245 (271)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988754
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-44 Score=368.47 Aligned_cols=215 Identities=21% Similarity=0.306 Sum_probs=181.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (723)
++++||++.|. .++.+|+|||+.+++||+++|+||||||||||+|+|+|+++|++ |+|.++|++... .
T Consensus 2 l~~~~l~~~y~----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 74 (243)
T 1mv5_A 2 LSARHVDFAYD----DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA---GEITIDGQPIDNISLENW 74 (243)
T ss_dssp EEEEEEEECSS----SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSB---SCEEETTEESTTTSCSCC
T ss_pred EEEEEEEEEeC----CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEEhhhCCHHHH
Confidence 68999999883 23579999999999999999999999999999999999999874 999999987532 2
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHHHHH
Q 004932 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRR 255 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerqR 255 (723)
++.++|++|++.+++ .||+||+.++.. +. ..+++++++++.+++.+..++.+.| +..+.+||||||||
T Consensus 75 ~~~i~~v~q~~~l~~-~tv~enl~~~~~---~~---~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qr 147 (243)
T 1mv5_A 75 RSQIGFVSQDSAIMA-GTIRENLTYGLE---GD---YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQR 147 (243)
T ss_dssp TTTCCEECCSSCCCC-EEHHHHTTSCTT---SC---SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHH
T ss_pred HhhEEEEcCCCcccc-ccHHHHHhhhcc---CC---CCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHH
Confidence 346999999998887 599999976311 11 1245678899999998877664321 13457999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
|+|||||+.+|++|||||||+|||+.++..+++.|++++ +|+|||+++|++. .+ ..||++++|++|++++.|+++++
T Consensus 148 v~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~ 224 (243)
T 1mv5_A 148 LAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEKGQITGSGKHNEL 224 (243)
T ss_dssp HHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEETTEECCCSCHHHH
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999997 6999999998864 45 46999999999999999998877
Q ss_pred HH
Q 004932 336 LQ 337 (723)
Q Consensus 336 ~~ 337 (723)
..
T Consensus 225 ~~ 226 (243)
T 1mv5_A 225 VA 226 (243)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-43 Score=365.11 Aligned_cols=209 Identities=22% Similarity=0.352 Sum_probs=180.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CCCce
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MPYGS 183 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~--~~~~~ 183 (723)
++++||++.|.+.. ..+.+|+|+|+.++ ||+++|+||||||||||||+|+|++ |+ +|+|.++|++.. ..++.
T Consensus 2 l~~~~l~~~y~~~~-~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~ 75 (263)
T 2pjz_A 2 IQLKNVGITLSGKG-YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIR 75 (263)
T ss_dssp EEEEEEEEEEEEET-TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTT
T ss_pred EEEEEEEEEeCCCC-ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhh
Confidence 68999999995210 11569999999999 9999999999999999999999999 86 499999998742 11456
Q ss_pred EE-EEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 184 YG-FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 184 ~~-yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
++ |++|++.+ .+||+||+.+..... . ..+++++++++.+||. +..++.+ .+|||||||||+||||
T Consensus 76 i~~~v~Q~~~l--~~tv~enl~~~~~~~--~---~~~~~~~~~l~~~gl~~~~~~~~~------~~LSgGqkqRv~lAra 142 (263)
T 2pjz_A 76 YSTNLPEAYEI--GVTVNDIVYLYEELK--G---LDRDLFLEMLKALKLGEEILRRKL------YKLSAGQSVLVRTSLA 142 (263)
T ss_dssp EEECCGGGSCT--TSBHHHHHHHHHHHT--C---CCHHHHHHHHHHTTCCGGGGGSBG------GGSCHHHHHHHHHHHH
T ss_pred eEEEeCCCCcc--CCcHHHHHHHhhhhc--c---hHHHHHHHHHHHcCCChhHhcCCh------hhCCHHHHHHHHHHHH
Confidence 99 99999887 899999998865432 1 2346789999999998 8887755 4999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCC-EEEEEeCCeEEEEeChhHHHH
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD-RICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D-~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|+.+|++|||||||+|||+.++..+++.|+++++ |||+++|++ .++.++|| ++++|++|++++.|+++++.+
T Consensus 143 L~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 143 LASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp HHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999999999999999864 999988887 46788999 999999999999999998864
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=359.41 Aligned_cols=203 Identities=22% Similarity=0.307 Sum_probs=173.8
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 004932 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (723)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (723)
+..++++||++.|. + ++|+|||+.+++||+++|+||||||||||||+|+|+++|+ +|+|.++|++....++
T Consensus 8 ~~~l~~~~ls~~y~-----~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~ 78 (214)
T 1sgw_A 8 GSKLEIRDLSVGYD-----K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKG 78 (214)
T ss_dssp -CEEEEEEEEEESS-----S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGGGG
T ss_pred CceEEEEEEEEEeC-----C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhhhhcC
Confidence 45799999999883 3 7999999999999999999999999999999999999987 4999999987532235
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004932 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
.++|++|++.+++.+||+||+.+....... . ..+++++++++.+||.+. ++.+ .+|||||||||+|||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~--~~~~~~~~~l~~~gl~~~-~~~~------~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 79 KIFFLPEEIIVPRKISVEDYLKAVASLYGV-K--VNKNEIMDALESVEVLDL-KKKL------GELSQGTIRRVQLASTL 148 (214)
T ss_dssp GEEEECSSCCCCTTSBHHHHHHHHHHHTTC-C--CCHHHHHHHHHHTTCCCT-TSBG------GGSCHHHHHHHHHHHHT
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-c--hHHHHHHHHHHHcCCCcC-CCCh------hhCCHHHHHHHHHHHHH
Confidence 799999999999999999999887543211 1 125678999999999877 7654 49999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004932 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++. ++..+||+++++ .|+|
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKY-STKI 210 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGG-BC--
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999999999999877899999999984 678888988755 4544
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=362.73 Aligned_cols=217 Identities=24% Similarity=0.324 Sum_probs=179.9
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++||++.|.++ ..+.+|+|||+.+++||+++|+||||||||||+|+|+|++++ +|+|.++|++....
T Consensus 16 ~~l~i~~l~~~y~~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~ 89 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQ--TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRN 89 (260)
T ss_dssp CCEEEEEEEECCTTC--CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHH
T ss_pred CeEEEEEEEEEeCCC--CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHH
Confidence 358999999988421 124699999999999999999999999999999999999875 39999999875321
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHHH
Q 004932 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGER 253 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGer 253 (723)
++.++||+|++.+++ .||+||+.++. .. ..++++.++++.+++.+..+....+ +..+.+||||||
T Consensus 90 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~~---~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqk 161 (260)
T 2ghi_A 90 SIRSIIGIVPQDTILFN-ETIKYNILYGK----LD---ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGER 161 (260)
T ss_dssp HHHTTEEEECSSCCCCS-EEHHHHHHTTC----TT---CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHH
T ss_pred HHhccEEEEcCCCcccc-cCHHHHHhccC----CC---CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHH
Confidence 246999999998886 69999997631 11 1234577888888987765433211 235679999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
|||+|||||+.+|+||||||||+|||+.++..+++.|+++++ |+|||+++|++. .+ ..||++++|++|++++.|+++
T Consensus 162 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~-~~-~~~d~i~~l~~G~i~~~g~~~ 238 (260)
T 2ghi_A 162 QRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLS-TI-SSAESIILLNKGKIVEKGTHK 238 (260)
T ss_dssp HHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGG-GS-TTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999965 899999999875 44 469999999999999999998
Q ss_pred HHHH
Q 004932 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++..
T Consensus 239 ~l~~ 242 (260)
T 2ghi_A 239 DLLK 242 (260)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8754
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-42 Score=352.05 Aligned_cols=207 Identities=21% Similarity=0.295 Sum_probs=171.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (723)
.++++||++.|.. .++++|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++| .+
T Consensus 6 ~l~~~~l~~~y~~---~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g--------~i 71 (229)
T 2pze_A 6 EVVMENVTAFWEE---GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG--------RI 71 (229)
T ss_dssp EEEEEEEEECSST---TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS--------CE
T ss_pred eEEEEEEEEEeCC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC--------EE
Confidence 5899999998842 2357999999999999999999999999999999999999987 49999998 38
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHHHHHHHHH
Q 004932 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerqRv~IA 259 (723)
+|++|++.+++. ||+||+.++. . . ...+++++++.+++.+..++...+ +..+.+|||||||||+||
T Consensus 72 ~~v~q~~~~~~~-tv~enl~~~~--~--~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lA 142 (229)
T 2pze_A 72 SFCSQFSWIMPG-TIKENIIFGV--S--Y----DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 142 (229)
T ss_dssp EEECSSCCCCSB-CHHHHHHTTS--C--C----CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHH
T ss_pred EEEecCCcccCC-CHHHHhhccC--C--c----ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHH
Confidence 999999998885 9999997632 1 0 122345667777877665543211 123579999999999999
Q ss_pred HHHhhCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 260 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~-L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|||+.+|++|||||||+|||+.++..+++. ++++. +|+|||+++|++. .+. .||++++|++|++++.|+++++.+
T Consensus 143 ral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 218 (229)
T 2pze_A 143 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HLK-KADKILILHEGSSYFYGTFSELQN 218 (229)
T ss_dssp HHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HHH-HCSEEEEEETTEEEEEECHHHHHT
T ss_pred HHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999997 45664 4889999988864 554 599999999999999999988753
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-42 Score=379.05 Aligned_cols=215 Identities=21% Similarity=0.293 Sum_probs=181.5
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++||++.|.. .++.+|+|||+++++||+++|+||||||||||||+|+|+++ + +|+|.++|+++...
T Consensus 18 ~~i~~~~l~~~y~~---~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~ 90 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE---GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLE 90 (390)
T ss_dssp CCEEEEEEEEESSS---SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHH
T ss_pred CeEEEEEEEEEecC---CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChH
Confidence 35899999999942 24579999999999999999999999999999999999986 4 49999999875421
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHHH
Q 004932 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGER 253 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGer 253 (723)
++.++||+|+..+++ +||+||+.+. .. ..+++++++++.++|.+..++.+.. .....+||||||
T Consensus 91 ~~rr~ig~v~Q~~~lf~-~tv~enl~~~------~~--~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqr 161 (390)
T 3gd7_A 91 QWRKAFGVIPQKVFIFS-GTFRKNLDPN------AA--HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHK 161 (390)
T ss_dssp HHHHTEEEESCCCCCCS-EEHHHHHCTT------CC--SCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHH
T ss_pred HHhCCEEEEcCCcccCc-cCHHHHhhhc------cc--cCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHH
Confidence 256999999999997 6999999531 11 2346788999999999998886541 011223999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
|||+|||||+.+|++|||||||||||+.++.++.+.|+++. .++|+|+++|+. +....||||++|++|+++..|+++
T Consensus 162 QRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~--e~~~~aDri~vl~~G~i~~~g~~~ 238 (390)
T 3gd7_A 162 QLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARI--EAMLECDQFLVIEENKVRQYDSIL 238 (390)
T ss_dssp HHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSS--GGGTTCSEEEEEETTEEEEESSHH
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCH--HHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999864 478999988885 345679999999999999999999
Q ss_pred HHHH
Q 004932 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++.+
T Consensus 239 el~~ 242 (390)
T 3gd7_A 239 ELYH 242 (390)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9865
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-42 Score=351.62 Aligned_cols=205 Identities=20% Similarity=0.268 Sum_probs=167.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (723)
.++++||++.|.. .++.+|+|||+.+++||+++|+||||||||||+|+|+|+++|+ +|+|.++| .+
T Consensus 3 ~l~~~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g--------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWAR---SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG--------SV 68 (237)
T ss_dssp CEEEEEEEEESCT---TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS--------CE
T ss_pred eEEEEEEEEEeCC---CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC--------EE
Confidence 3789999999842 1357999999999999999999999999999999999999886 59999998 38
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhh-------hhcCCCCCCCCCHHHHHHHH
Q 004932 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANK-------LIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-------~ig~~~~~~~LSGGerqRv~ 257 (723)
+|++|++.+ +.+||+||+.+... .. . +..+++++.+++.+..+. .+ +..+.+|||||||||+
T Consensus 69 ~~v~Q~~~~-~~~tv~enl~~~~~--~~----~--~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~LSgGqkqRv~ 137 (237)
T 2cbz_A 69 AYVPQQAWI-QNDSLRENILFGCQ--LE----E--PYYRSVIQACALLPDLEILPSGDRTEI--GEKGVNLSGGQKQRVS 137 (237)
T ss_dssp EEECSSCCC-CSEEHHHHHHTTSC--CC----T--THHHHHHHHTTCHHHHTTSTTGGGSEE--STTSBCCCHHHHHHHH
T ss_pred EEEcCCCcC-CCcCHHHHhhCccc--cC----H--HHHHHHHHHHhhHHHHHhccccccccc--cCCCCCCCHHHHHHHH
Confidence 999999865 57899999976421 11 1 123445555555433221 11 2456799999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH---HHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK---KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~---~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|||||+.+|++|||||||+|||+.++..+++.|+ ++. +|+|||+++|++. .+ ..||++++|++|++++.|++++
T Consensus 138 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~ 214 (237)
T 2cbz_A 138 LARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMS-YL-PQVDVIIVMSGGKISEMGSYQE 214 (237)
T ss_dssp HHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCST-TG-GGSSEEEEEETTEEEEEECHHH
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChH-HH-HhCCEEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999995 443 5899999999875 44 5799999999999999999988
Q ss_pred HHH
Q 004932 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
+.+
T Consensus 215 ~~~ 217 (237)
T 2cbz_A 215 LLA 217 (237)
T ss_dssp HHH
T ss_pred Hhh
Confidence 754
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=384.09 Aligned_cols=218 Identities=23% Similarity=0.306 Sum_probs=186.0
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (723)
..++++||++.|+++ ++++|+|+|+++++||++||+||||||||||+|+|+|+++|++ |+|.++|++...
T Consensus 340 ~~i~~~~v~~~y~~~---~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~---G~i~~~g~~~~~~~~~ 413 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGK---EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDS---GSICLDGHDVRDYKLT 413 (582)
T ss_pred CeEEEEEEEEEcCCC---CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---CEEEECCEEhhhCCHH
Confidence 358999999999521 2579999999999999999999999999999999999999975 999999987532
Q ss_pred -CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCC-----CCCCCCCHHHH
Q 004932 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGER 253 (723)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGer 253 (723)
.++.++||+|++.+++. ||+||+.++.. +. ..+++++++++.+++.+..++.++|. +...+||||||
T Consensus 414 ~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~~---~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~ 486 (582)
T 3b5x_A 414 NLRRHFALVSQNVHLFND-TIANNIAYAAE---GE---YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQR 486 (582)
T ss_pred HHhcCeEEEcCCCccccc-cHHHHHhccCC---CC---CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHH
Confidence 13569999999999874 99999987421 11 23466889999999998877765332 24568999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||++|||||+.+|++|+|||||||||+.++..+.+.|+++.+ |+|+|+++|++. .+ +.||+|++|++|++++.|+++
T Consensus 487 qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b5x_A 487 QRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS-TI-EQADEILVVDEGEIIERGRHA 563 (582)
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999865 899999999874 44 479999999999999999998
Q ss_pred HHHH
Q 004932 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++.+
T Consensus 564 ~l~~ 567 (582)
T 3b5x_A 564 DLLA 567 (582)
T ss_pred HHHh
Confidence 8754
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=385.09 Aligned_cols=217 Identities=22% Similarity=0.302 Sum_probs=184.1
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++|+++.|++ ..+++|+|+|+++++||++||+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 338 ~~i~~~~v~~~y~~---~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~ 411 (578)
T 4a82_A 338 GRIDIDHVSFQYND---NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTG 411 (578)
T ss_dssp CCEEEEEEEECSCS---SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHH
T ss_pred CeEEEEEEEEEcCC---CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHH
Confidence 36999999999853 2357999999999999999999999999999999999999987 49999999986432
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCC-----CCCCCCCHHHH
Q 004932 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGER 253 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGer 253 (723)
++.++||+|++.+++. ||+||+.++ .+. ..++++.++++..++.+..++.+.|. +...+||||||
T Consensus 412 ~~r~~i~~v~Q~~~l~~~-tv~eni~~~----~~~---~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~ 483 (578)
T 4a82_A 412 SLRNQIGLVQQDNILFSD-TVKENILLG----RPT---ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQK 483 (578)
T ss_dssp HHHHTEEEECSSCCCCSS-BHHHHHGGG----CSS---CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHH
T ss_pred HHhhheEEEeCCCccCcc-cHHHHHhcC----CCC---CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHH
Confidence 2469999999999876 999999764 111 23456788889999887766654322 34468999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||++|||||+.+|++|+|||||||||+.++..+.+.|+++. +++|+|+++|++. .+ +.||+|++|++|++++.|+++
T Consensus 484 Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~ 560 (578)
T 4a82_A 484 QRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS-TI-THADKIVVIENGHIVETGTHR 560 (578)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG-GT-TTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999985 4789999889875 44 569999999999999999999
Q ss_pred HHHH
Q 004932 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++.+
T Consensus 561 el~~ 564 (578)
T 4a82_A 561 ELIA 564 (578)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=384.27 Aligned_cols=217 Identities=23% Similarity=0.296 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++|+++.|+++ ++++|+|+|+++++||++||+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 341 ~i~~~~v~~~y~~~---~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~ 414 (582)
T 3b60_A 341 DLEFRNVTFTYPGR---EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLAS 414 (582)
T ss_dssp CEEEEEEEECSSSS---SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHH
T ss_pred cEEEEEEEEEcCCC---CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHH
Confidence 58999999998421 257999999999999999999999999999999999999987 49999999986431
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCC-----CCCCCCCHHHHH
Q 004932 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERR 254 (723)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGerq 254 (723)
++.++||+|++.+++. ||+||+.++.. +. ..+++++++++.+++.+..++.+.|. +...+|||||||
T Consensus 415 ~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~~---~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~q 487 (582)
T 3b60_A 415 LRNQVALVSQNVHLFND-TVANNIAYART---EE---YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQ 487 (582)
T ss_dssp HHHTEEEECSSCCCCSS-BHHHHHHTTTT---SC---CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHH
T ss_pred HHhhCeEEccCCcCCCC-CHHHHHhccCC---CC---CCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHH
Confidence 2469999999999874 99999976421 11 23466889999999988877654322 245789999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|++|||||+.+|++|+|||||||||+.++..+.+.|+++.+ |+|+|+++|++. .+ +.||+|++|++|++++.|++++
T Consensus 488 rl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~ 564 (582)
T 3b60_A 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS-TI-EQADEIVVVEDGIIVERGTHSE 564 (582)
T ss_dssp HHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG-GT-TTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHH-HH-HhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999975 899999999875 44 5799999999999999999988
Q ss_pred HHH
Q 004932 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
+.+
T Consensus 565 l~~ 567 (582)
T 3b60_A 565 LLA 567 (582)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=384.48 Aligned_cols=217 Identities=25% Similarity=0.390 Sum_probs=183.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++|+++.|++ ..+++|+|+|+++++||++||+||||||||||+|+|+|+++|+ +|+|.++|+++...
T Consensus 340 ~~i~~~~v~~~y~~---~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~ 413 (587)
T 3qf4_A 340 GSVSFENVEFRYFE---NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLK 413 (587)
T ss_dssp CCEEEEEEEECSSS---SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHH
T ss_pred CcEEEEEEEEEcCC---CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHH
Confidence 36999999999853 2457999999999999999999999999999999999999987 49999999875321
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHHH
Q 004932 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGER 253 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGer 253 (723)
++.++||+|++.+++. ||+||+.++. +. ..++++.++++..++.+..+..+.| ++.+.+||||||
T Consensus 414 ~~r~~i~~v~Q~~~lf~~-tv~eni~~~~----~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqr 485 (587)
T 3qf4_A 414 DLRGHISAVPQETVLFSG-TIKENLKWGR----ED---ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQK 485 (587)
T ss_dssp HHHHHEEEECSSCCCCSE-EHHHHHTTTC----SS---CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHH
T ss_pred HHHhheEEECCCCcCcCc-cHHHHHhccC----CC---CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHH
Confidence 3469999999999865 9999996531 11 2345567788888887765544322 235678999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||++|||||+.+|++|+||||||+||+.++..+.+.|+++. +|+|+|+++|++. .+ ..||||++|++|++++.|+++
T Consensus 486 Qrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~-~~-~~~d~i~vl~~G~i~~~g~~~ 562 (587)
T 3qf4_A 486 QRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP-TA-LLADKILVLHEGKVAGFGTHK 562 (587)
T ss_dssp HHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH-HH-TTSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH-HH-HhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999985 5899999999874 44 589999999999999999999
Q ss_pred HHHH
Q 004932 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++.+
T Consensus 563 el~~ 566 (587)
T 3qf4_A 563 ELLE 566 (587)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8865
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=386.26 Aligned_cols=216 Identities=23% Similarity=0.349 Sum_probs=183.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++||++.|+ .++++|+|+|+++++||++||+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 353 ~~i~~~~v~~~y~----~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~ 425 (598)
T 3qf4_B 353 GEIEFKNVWFSYD----KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRS 425 (598)
T ss_dssp CCEEEEEEECCSS----SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHH
T ss_pred CeEEEEEEEEECC----CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHH
Confidence 3699999999884 2356999999999999999999999999999999999999997 49999999986432
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHH
Q 004932 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGer 253 (723)
++.++||+|++.+++ .||+||+.++ .+. ..+++++++++.+++.+..++.+.|.+ ...+||||||
T Consensus 426 ~~r~~i~~v~Q~~~lf~-~tv~eni~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~ 497 (598)
T 3qf4_B 426 SLRSSIGIVLQDTILFS-TTVKENLKYG----NPG---ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQR 497 (598)
T ss_dssp HHHHHEEEECTTCCCCS-SBHHHHHHSS----STT---CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHH
T ss_pred HHHhceEEEeCCCcccc-ccHHHHHhcC----CCC---CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHH
Confidence 346999999999886 5999999763 111 123456788888888877776653322 2368999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||++|||||+.+|++|+||||||+||+.++..+.+.|+++. +|+|+|+++|++. .+. .||+|++|++|++++.|+++
T Consensus 498 Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~~~-~~d~i~~l~~G~i~~~g~~~ 574 (598)
T 3qf4_B 498 QLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLN-TIK-NADLIIVLRDGEIVEMGKHD 574 (598)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTT-HHH-HCSEEEEECSSSEEECSCHH
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999986 5899999999986 454 59999999999999999999
Q ss_pred HHHH
Q 004932 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++.+
T Consensus 575 ~l~~ 578 (598)
T 3qf4_B 575 ELIQ 578 (598)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=344.52 Aligned_cols=202 Identities=21% Similarity=0.317 Sum_probs=158.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (723)
.++++||++. .+.+|+|||+.+++||+++|+||||||||||||+|+|+++|+ +|+|.++| .+
T Consensus 40 ~l~~~~l~~~-------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g--------~i 101 (290)
T 2bbs_A 40 SLSFSNFSLL-------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG--------RI 101 (290)
T ss_dssp -----------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS--------CE
T ss_pred eEEEEEEEEc-------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC--------EE
Confidence 5889999874 146999999999999999999999999999999999999886 49999998 38
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHHHHHHHHH
Q 004932 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerqRv~IA 259 (723)
+|++|++.+++. ||+||+. +. .. ....++++++.+++.+..++...+ +..+.+|||||||||+||
T Consensus 102 ~~v~Q~~~l~~~-tv~enl~-~~--~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lA 171 (290)
T 2bbs_A 102 SFCSQNSWIMPG-TIKENII-GV--SY------DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 171 (290)
T ss_dssp EEECSSCCCCSS-BHHHHHH-TT--CC------CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHH
T ss_pred EEEeCCCccCcc-cHHHHhh-Cc--cc------chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHH
Confidence 999999988875 9999996 21 11 112345667778887665543211 123468999999999999
Q ss_pred HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTL-KKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 260 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L-~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|||+.+|++|||||||+|||+.++..+++.+ +++. +|+|||+++|++. .+ ..||++++|++|++++.|+++++..
T Consensus 172 raL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 172 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH-HH-HcCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999999999999999999999999974 5554 4899999988863 55 4699999999999999999988753
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-39 Score=400.41 Aligned_cols=220 Identities=23% Similarity=0.352 Sum_probs=187.8
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++||++.|+.+ ...++|+|||++++|||.+||+||||||||||+++|.|+++|++ |+|.+||.++...
T Consensus 1075 g~I~f~nVsf~Y~~~--~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~---G~I~iDG~di~~i~~~ 1149 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPER--PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLG---GEIFIDGSEIKTLNPE 1149 (1321)
T ss_dssp CCEEEEEEEECCTTS--CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSS---SEEEETTEETTTBCHH
T ss_pred CeEEEEEEEEeCCCC--CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCC---CEEEECCEEhhhCCHH
Confidence 369999999999532 34579999999999999999999999999999999999999975 9999999987532
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHH
Q 004932 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGer 253 (723)
++++++|+|++.+|.. |++|||.|+. +. ....++.+.++++..++.+....+++|.+ ....||||||
T Consensus 1150 ~lR~~i~~V~Qdp~LF~g-TIreNI~~gl----d~-~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQr 1223 (1321)
T 4f4c_A 1150 HTRSQIAIVSQEPTLFDC-SIAENIIYGL----DP-SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQK 1223 (1321)
T ss_dssp HHHTTEEEECSSCCCCSE-EHHHHHSSSS----CT-TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHH
T ss_pred HHHhheEEECCCCEeeCc-cHHHHHhccC----CC-CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHH
Confidence 3579999999999965 9999996531 11 11246779999999999887766655433 2357999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||++|||||+++|+||+||||||+||+.+...|.+.|+++. +|+|+|+++|..+. ...||||+||++|+|+++|+++
T Consensus 1224 QriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~G~IvE~Gth~ 1300 (1321)
T 4f4c_A 1224 QRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSNGTIIEKGTHT 1300 (1321)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESSSSEEEEECHH
T ss_pred HHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998865 47899999998753 4669999999999999999999
Q ss_pred HHHH
Q 004932 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++++
T Consensus 1301 eLl~ 1304 (1321)
T 4f4c_A 1301 QLMS 1304 (1321)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=377.73 Aligned_cols=218 Identities=21% Similarity=0.274 Sum_probs=189.0
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++|+++.|++. .++++|+|+|+++++||.+||+||||||||||+++|.|+++|. +|+|.+||.+++..
T Consensus 414 g~I~~~nvsF~Y~~~--~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~ 488 (1321)
T 4f4c_A 414 GDITVENVHFTYPSR--PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLE 488 (1321)
T ss_dssp CCEEEEEEEECCSSS--TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHH
T ss_pred CcEEEEEeeeeCCCC--CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccc---cCcccCCCccchhccHH
Confidence 369999999999642 3467999999999999999999999999999999999999997 49999999986542
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCC-----CCCCCCHHHH
Q 004932 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~-----~~~~LSGGer 253 (723)
++.++||+|++.+|. .||+|||.|+. + ...++++.++++..++.+..+.++.|++ ....||||||
T Consensus 489 ~lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~----~---~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQk 560 (1321)
T 4f4c_A 489 FLRKNVAVVSQEPALFN-CTIEENISLGK----E---GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQK 560 (1321)
T ss_dssp HHHHHEEEECSSCCCCS-EEHHHHHHTTC----T---TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHH
T ss_pred HHhhcccccCCcceeeC-CchhHHHhhhc----c---cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHH
Confidence 347999999999985 59999998741 1 1245678999999999887777665544 3457999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||++|||||+++|+|||||||||+||+.++..+.+.|+++.+ |+|+|+++|+++ ..+.||+|++|++|+|++.|+.+
T Consensus 561 QRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~ 637 (1321)
T 4f4c_A 561 QRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHR 637 (1321)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHH
Confidence 999999999999999999999999999999999999999864 889999999985 45789999999999999999999
Q ss_pred HHHH
Q 004932 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
|+.+
T Consensus 638 eL~~ 641 (1321)
T 4f4c_A 638 ALMA 641 (1321)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 9864
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-37 Score=382.81 Aligned_cols=218 Identities=22% Similarity=0.291 Sum_probs=183.0
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++||++.|+++ ...++|+|||+++++||++||+||||||||||+++|+|+++|+ +|+|.++|.++...
T Consensus 386 g~i~~~~v~~~y~~~--~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~ 460 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSR--KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVR 460 (1284)
T ss_dssp CCEEEEEEEECCSST--TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHH
T ss_pred CeEEEEEEEEEcCCC--CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEHHhCCHH
Confidence 369999999999532 2357999999999999999999999999999999999999987 49999999985422
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCC-----CCCCCCCHHHH
Q 004932 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGER 253 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGer 253 (723)
++.++||+|++.+++. ||+||+.++. +. ..++.+.++++..++.+..+++..|. +...+||||||
T Consensus 461 ~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~----~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~ 532 (1284)
T 3g5u_A 461 YLREIIGVVSQEPVLFAT-TIAENIRYGR----ED---VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQK 532 (1284)
T ss_dssp HHHHHEEEECSSCCCCSS-CHHHHHHHHC----SS---CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHH
T ss_pred HHHhheEEEcCCCccCCc-cHHHHHhcCC----CC---CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHH
Confidence 2469999999999875 9999998752 11 13456777888888776655544322 34568999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||++|||||+.+|+|||||||||+||+.++..+.+.|+++. +|+|+|+++|+.. .+. .||+|++|++|++++.|+.+
T Consensus 533 QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~i~-~~d~i~vl~~G~i~~~g~~~ 609 (1284)
T 3g5u_A 533 QRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLS-TVR-NADVIAGFDGGVIVEQGNHD 609 (1284)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHH-HHT-TCSEEEECSSSCCCCEECHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998875 5899999888864 554 49999999999999999999
Q ss_pred HHHH
Q 004932 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++.+
T Consensus 610 ~l~~ 613 (1284)
T 3g5u_A 610 ELMR 613 (1284)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-37 Score=381.53 Aligned_cols=220 Identities=22% Similarity=0.297 Sum_probs=182.8
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++||++.|+++ ...++|+|||+++++||++||+||||||||||+++|+|+++|+ +|+|.++|+++...
T Consensus 1029 g~i~~~~v~~~y~~~--~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~ 1103 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTR--PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQ 1103 (1284)
T ss_dssp CCEEEEEEEBCCSCG--GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHH
T ss_pred CcEEEEEEEEECCCC--CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHH
Confidence 369999999999532 2346999999999999999999999999999999999999987 49999999876432
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCC-----CCCCCCCHHHH
Q 004932 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGER 253 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGer 253 (723)
++.++||+|++.+++ .||+||+.++. +.. ...++.+.+.++..++.+..++.+.|. +....||||||
T Consensus 1104 ~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~----~~~-~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~ 1177 (1284)
T 3g5u_A 1104 WLRAQLGIVSQEPILFD-CSIAENIAYGD----NSR-VVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQK 1177 (1284)
T ss_dssp HHTTSCEEEESSCCCCS-SBHHHHHTCCC----SSC-CCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHH
T ss_pred HHHhceEEECCCCcccc-ccHHHHHhccC----CCC-CCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHH
Confidence 356999999998874 69999996532 110 113455777888888877666554322 23468999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
|||+|||||+.+|+||||||||+|||+.++..+.+.|+++. +|+|+|+++|+.. .+ ..||||++|++|++++.|+++
T Consensus 1178 Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~-~i-~~~dri~vl~~G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1178 QRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLS-TI-QNADLIVVIQNGKVKEHGTHQ 1254 (1284)
T ss_dssp HHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTT-GG-GSCSEEEEEETBEEEEEECHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998854 5899999899885 45 559999999999999999999
Q ss_pred HHHH
Q 004932 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++.+
T Consensus 1255 ~l~~ 1258 (1284)
T 3g5u_A 1255 QLLA 1258 (1284)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8865
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=344.47 Aligned_cols=206 Identities=19% Similarity=0.200 Sum_probs=176.1
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 004932 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (723)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (723)
...++++|+++.|. ...|+++|+.+++||++||+||||||||||+|+|+|+++|+. |+|.++ .
T Consensus 285 ~~~l~~~~l~~~~~------~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~---G~i~~~--------~ 347 (538)
T 1yqt_A 285 ETLVTYPRLVKDYG------SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE---GKIEWD--------L 347 (538)
T ss_dssp CEEEEECCEEEEET------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSB---CCCCCC--------C
T ss_pred CeEEEEeeEEEEEC------CEEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEEC--------c
Confidence 34689999998873 246899999999999999999999999999999999999874 998751 3
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004932 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
.++|++|+....+.+||.|++........ ...++++++++.+++.+..++.++ .|||||||||+|||+|
T Consensus 348 ~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~------~LSGGe~qrv~lAraL 416 (538)
T 1yqt_A 348 TVAYKPQYIKADYEGTVYELLSKIDASKL-----NSNFYKTELLKPLGIIDLYDREVN------ELSGGELQRVAIAATL 416 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHHH-----TCHHHHHHTTTTTTCGGGTTSBGG------GCCHHHHHHHHHHHHH
T ss_pred eEEEEecCCcCCCCCcHHHHHHhhhccCC-----CHHHHHHHHHHHcCChhhhcCChh------hCCHHHHHHHHHHHHH
Confidence 59999999887788999998865311110 123567889999999887777554 9999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeC--CeEEEEeChhHHHH
Q 004932 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSN--GNTLFFGETLACLQ 337 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~--G~iv~~G~~~~~~~ 337 (723)
+.+|++|||||||+|||+.++..++++|++++ +.|.|||+++|+. .++..+||||++|++ |+++..|+++++.+
T Consensus 417 ~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 417 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp TSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999999999999999999999999997 4699999988775 688899999999986 88999999988765
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-36 Score=347.07 Aligned_cols=205 Identities=20% Similarity=0.201 Sum_probs=176.5
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (723)
..++++|+++.|. ...|+++|+.+++||++||+||||||||||||+|+|+++|++ |+|.++ ..
T Consensus 356 ~~l~~~~l~~~~~------~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~---G~I~~~--------~~ 418 (607)
T 3bk7_A 356 TLVEYPRLVKDYG------SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE---GKVEWD--------LT 418 (607)
T ss_dssp EEEEECCEEEECS------SCEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSB---SCCCCC--------CC
T ss_pred eEEEEeceEEEec------ceEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEEe--------eE
Confidence 4689999998873 246899999999999999999999999999999999999874 988751 35
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 004932 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (723)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~ 263 (723)
++|++|+..+.+.+||.|++........ ...++++++++.++|.+..++.++ +|||||||||+|||||+
T Consensus 419 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~------~LSGGe~QRv~iAraL~ 487 (607)
T 3bk7_A 419 VAYKPQYIKAEYEGTVYELLSKIDSSKL-----NSNFYKTELLKPLGIIDLYDRNVE------DLSGGELQRVAIAATLL 487 (607)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHHHHHH-----HCHHHHHHTHHHHTCTTTTTSBGG------GCCHHHHHHHHHHHHHT
T ss_pred EEEEecCccCCCCCcHHHHHHhhhccCC-----CHHHHHHHHHHHcCCchHhcCChh------hCCHHHHHHHHHHHHHH
Confidence 9999999888788999998865311100 123567899999999888877554 99999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeC--CeEEEEeChhHHHH
Q 004932 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSN--GNTLFFGETLACLQ 337 (723)
Q Consensus 264 ~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~--G~iv~~G~~~~~~~ 337 (723)
.+|++|||||||+|||+.++..++++|++++ +.|.|||+++|+. .++..+||||++|++ |+++..|+++++.+
T Consensus 488 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 488 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred hCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9999999999999999999999999999997 4689999988775 588899999999986 88999999988765
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=339.30 Aligned_cols=207 Identities=17% Similarity=0.244 Sum_probs=173.5
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 004932 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (723)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (723)
...++++|+++.+. ...|+++|+.+++||+++|+||||||||||+|+|+|+++|++ |+|.++| .
T Consensus 267 ~~~l~~~~l~~~~~------~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~~-------~ 330 (538)
T 3ozx_A 267 KTKMKWTKIIKKLG------DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADE---GSVTPEK-------Q 330 (538)
T ss_dssp CEEEEECCEEEEET------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSB---CCEESSC-------C
T ss_pred cceEEEcceEEEEC------CEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC-------e
Confidence 34689999998873 246888899999999999999999999999999999999974 9998765 3
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004932 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
.++|++|+......+||.|++.+... .. .......++++++.++|.+..++.+ .+|||||||||+|||||
T Consensus 331 ~i~~~~q~~~~~~~~tv~~~l~~~~~-~~---~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSGGq~QRv~iAraL 400 (538)
T 3ozx_A 331 ILSYKPQRIFPNYDGTVQQYLENASK-DA---LSTSSWFFEEVTKRLNLHRLLESNV------NDLSGGELQKLYIAATL 400 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHCS-ST---TCTTSHHHHHTTTTTTGGGCTTSBG------GGCCHHHHHHHHHHHHH
T ss_pred eeEeechhcccccCCCHHHHHHHhhh-hc---cchhHHHHHHHHHHcCCHHHhcCCh------hhCCHHHHHHHHHHHHH
Confidence 58999999777778999999976311 11 1112345788999999988877755 49999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeC--CeEEEEeChhHHH
Q 004932 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSN--GNTLFFGETLACL 336 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~--G~iv~~G~~~~~~ 336 (723)
+.+|+||||||||+|||+.++..++++|+++++ .|.|||+++|+. .++..+||||++|++ |+....+++.++.
T Consensus 401 ~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 401 AKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 999999999999999999999999999999985 589999987775 688899999999986 6677777765543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=333.83 Aligned_cols=203 Identities=19% Similarity=0.248 Sum_probs=166.9
Q ss_pred EeEEEEEecccccccceeeceeeEEeCC-----cEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 004932 109 KDLTVTIKGKRRYSDKVVKSSNGYALPG-----TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (723)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~v~~G-----e~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (723)
+++++.|+. .+.+++++|+.+.+| |+++|+||||||||||+|+|+|+++|++ |+. .....
T Consensus 350 ~~~~~~y~~----~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~---G~~--------~~~~~ 414 (608)
T 3j16_B 350 ASRAFSYPS----LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDE---GQD--------IPKLN 414 (608)
T ss_dssp SSSCCEECC----EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSB---CCC--------CCSCC
T ss_pred cceeEEecC----cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCC---CcC--------ccCCc
Confidence 445555532 235788999999888 7899999999999999999999999874 752 12246
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 004932 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (723)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~ 263 (723)
++|++|+.......||+|++... .+ .. ......++++++.++|.+.+++.+ .+|||||||||+|||||+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~--~~--~~-~~~~~~~~~~l~~l~l~~~~~~~~------~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKK--IR--GQ-FLNPQFQTDVVKPLRIDDIIDQEV------QHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHH--CS--ST-TTSHHHHHHTHHHHTSTTTSSSBS------SSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHH--hh--cc-cccHHHHHHHHHHcCChhhhcCCh------hhCCHHHHHHHHHHHHHH
Confidence 89999997766678999987532 11 11 112356788999999998877654 599999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHHHHhcCCEEEEEeC--CeEEEEeChhHHHHH
Q 004932 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSN--GNTLFFGETLACLQH 338 (723)
Q Consensus 264 ~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~--G~iv~~G~~~~~~~~ 338 (723)
.+|+||||||||+|||+.++..++++|++++ +.|.|||+++|+. .++..+||||++|++ |+++..|+|+++++-
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999999996 5699999988775 688899999999986 999999999988753
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=333.94 Aligned_cols=200 Identities=21% Similarity=0.304 Sum_probs=166.8
Q ss_pred CceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 004932 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (723)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (723)
+..+...|+++.|. ++.+|+|+|+.+++||+++|+||||||||||||+|+| |+| +|.+... ..
T Consensus 433 ~~~L~~~~ls~~yg-----~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~-~~ 495 (986)
T 2iw3_A 433 GEDLCNCEFSLAYG-----AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE-EC 495 (986)
T ss_dssp SCEEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT-TS
T ss_pred cceeEEeeEEEEEC-----CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc-ce
Confidence 34677779999883 4579999999999999999999999999999999995 222 3433211 12
Q ss_pred eEEEEcCCC-ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCCHHHHHHHHHHH
Q 004932 183 SYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIAR 260 (723)
Q Consensus 183 ~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (723)
.++|++|+. .+++.+||.|++.+ .... . +++++++++.+||. +..++.++ +|||||||||+|||
T Consensus 496 ~~~~v~q~~~~~~~~ltv~e~l~~----~~~~---~-~~~v~~~L~~lgL~~~~~~~~~~------~LSGGqkQRvaLAr 561 (986)
T 2iw3_A 496 RTVYVEHDIDGTHSDTSVLDFVFE----SGVG---T-KEAIKDKLIEFGFTDEMIAMPIS------ALSGGWKMKLALAR 561 (986)
T ss_dssp CEEETTCCCCCCCTTSBHHHHHHT----TCSS---C-HHHHHHHHHHTTCCHHHHHSBGG------GCCHHHHHHHHHHH
T ss_pred eEEEEcccccccccCCcHHHHHHH----hhcC---H-HHHHHHHHHHcCCChhhhcCCcc------cCCHHHHHHHHHHH
Confidence 478999874 67889999999965 1111 1 56789999999994 67777665 99999999999999
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEE-EEeChhHHHH
Q 004932 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLACLQ 337 (723)
Q Consensus 261 aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~~~ 337 (723)
+|+.+|+||||||||+|||+.++..+.+.|++ .|+|||+++|+. .++.++||+|++|++|+++ +.|+++++..
T Consensus 562 AL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl-~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 562 AVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDS-VFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCH-HHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCH-HHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999999999999999999999999998 589999987775 6888999999999999997 6899988764
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=335.79 Aligned_cols=208 Identities=19% Similarity=0.223 Sum_probs=139.9
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHH---------------------HHHHcCCCCCCC----ceeEEEECCEe
Q 004932 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLL---------------------RAIAGRLPHSAR----MYGEVFVNGAK 176 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL---------------------~~L~G~~~~~~~----~~G~I~i~G~~ 176 (723)
.+.+|+|||+++++||++||+||||||||||+ +++.|+..|+.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45799999999999999999999999999998 888888877521 13667777754
Q ss_pred CCC-CCceEEEEcCCCc-------------------cCCCCCHHHHHHHHHHhcCCCccch-HH------HHHHHHHHHc
Q 004932 177 SEM-PYGSYGFVERETT-------------------LIGSLTVREYLYYSALLQLPGFFCQ-RK------NVVEDAIHAM 229 (723)
Q Consensus 177 ~~~-~~~~~~yv~Q~~~-------------------l~~~lTV~E~l~~~~~~~~~~~~~~-~~------~~v~~~l~~l 229 (723)
... ....+++++|... .++.+||.||+.+...+........ .+ ....++++.+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 321 2233455554332 3467899999977432221110000 00 0112458888
Q ss_pred CCchH-hhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeC
Q 004932 230 SLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMRPH--VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 306 (723)
Q Consensus 230 gL~~~-~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~--lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~ 306 (723)
||.+. .++.+ .+|||||||||+|||||+.+|+ +|||||||+|||+.++..++++|++++++|.|||+++|+
T Consensus 190 gL~~~~~~~~~------~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 190 GLDYLTLSRSA------GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TCTTCCTTCBG------GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CCchhhhcCCc------ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 98764 56644 4999999999999999999998 999999999999999999999999999889999998888
Q ss_pred ChHHHHhcCCEEEEE------eCCeEEEEeChhHHHH
Q 004932 307 SSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (723)
Q Consensus 307 ~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (723)
.. .+ ..||+|++| ++|++++.|+++++.+
T Consensus 264 ~~-~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 264 ED-TM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp HH-HH-HHCSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred HH-HH-hhCCEEEEecccccccCCEEEEecCHHHHhc
Confidence 63 44 569999999 8999999999998753
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=332.05 Aligned_cols=192 Identities=23% Similarity=0.245 Sum_probs=156.4
Q ss_pred EeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE---------EECCEeCCC
Q 004932 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV---------FVNGAKSEM 179 (723)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I---------~i~G~~~~~ 179 (723)
+||++.|.+ ...+|+|+| .+++||+++|+||||||||||||+|+|+++|+. |++ .++|.+...
T Consensus 95 ~~ls~~yg~----~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~---G~~~~~~~~~~~~~~G~~~~~ 166 (607)
T 3bk7_A 95 EDCVHRYGV----NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNL---CEDNDSWDNVIRAFRGNELQN 166 (607)
T ss_dssp GSEEEECST----TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCT---TTTCCCHHHHHHHTTTSTHHH
T ss_pred CCeEEEECC----CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCC---CccccccchhhheeCCEehhh
Confidence 788888731 124899999 999999999999999999999999999998875 875 355643210
Q ss_pred -------CCceEEEEcCCCccCC---CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCC
Q 004932 180 -------PYGSYGFVERETTLIG---SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249 (723)
Q Consensus 180 -------~~~~~~yv~Q~~~l~~---~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LS 249 (723)
....+++++|.....+ ..||.|++.. . +..++++++++.+||.+..++.++ +||
T Consensus 167 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~----~------~~~~~~~~~L~~lgL~~~~~~~~~------~LS 230 (607)
T 3bk7_A 167 YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK----V------DEVGKFEEVVKELELENVLDRELH------QLS 230 (607)
T ss_dssp HHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHH----T------CCSSCHHHHHHHTTCTTGGGSBGG------GCC
T ss_pred hhhhhhhhhcceEEeechhhhchhhccccHHHHhhh----h------HHHHHHHHHHHHcCCCchhCCChh------hCC
Confidence 1234788888643322 2399999853 1 112347889999999988887654 999
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 004932 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (723)
Q Consensus 250 GGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (723)
|||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|.|||+++|+. ..+..+||+|++|+++.
T Consensus 231 GGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl-~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 231 GGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL-AVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEESCT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecCh-HHHHhhCCEEEEECCCc
Confidence 9999999999999999999999999999999999999999999988899999988875 57888999999998653
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=328.79 Aligned_cols=195 Identities=23% Similarity=0.214 Sum_probs=156.6
Q ss_pred EEE-EeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE---------EECCE
Q 004932 106 VVW-KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV---------FVNGA 175 (723)
Q Consensus 106 l~~-~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I---------~i~G~ 175 (723)
..+ +||++.|.+ ...+|+||| .+++||+++|+||||||||||+|+|+|+++|+. |++ .++|.
T Consensus 21 ~~~~~~ls~~yg~----~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~---G~~~~~~~~~~~~~~g~ 92 (538)
T 1yqt_A 21 EQLEEDCVHRYGV----NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNL---CGDNDSWDGVIRAFRGN 92 (538)
T ss_dssp ---CCCEEEECST----TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCT---TTTCCSHHHHHHHTTTS
T ss_pred hhHhcCcEEEECC----ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CccCcchhhhHHhhCCc
Confidence 345 589988842 124899999 999999999999999999999999999998875 775 35664
Q ss_pred eCC-------CCCceEEEEcCCCccCCC---CCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCC
Q 004932 176 KSE-------MPYGSYGFVERETTLIGS---LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245 (723)
Q Consensus 176 ~~~-------~~~~~~~yv~Q~~~l~~~---lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~ 245 (723)
+.. .....+++++|+....+. .|+.|++... +..++++++++.+||.+..++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~----------~~~~~~~~~l~~lgl~~~~~~~~------ 156 (538)
T 1yqt_A 93 ELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA----------DETGKLEEVVKALELENVLEREI------ 156 (538)
T ss_dssp THHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH----------CSSSCHHHHHHHTTCTTTTTSBG------
T ss_pred cHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh----------hHHHHHHHHHHHcCCChhhhCCh------
Confidence 321 112357888887544332 3899988531 11234788999999988777755
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 004932 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (723)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (723)
.+|||||||||+||+||+.+|+||||||||++||+.++..+++.|++++++|+|||+++|+. .++..+||+|++|++|.
T Consensus 157 ~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~-~~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 157 QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL-AVLDYLSDIIHVVYGEP 235 (538)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEET
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCcc
Confidence 49999999999999999999999999999999999999999999999988899999988875 58889999999998653
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-33 Score=333.49 Aligned_cols=206 Identities=20% Similarity=0.297 Sum_probs=161.7
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (723)
..++++|+++.|++ ..+++|+|+|+.+++||+++|+||||||||||+|+|+|+++|+ +|+|.++|. ..
T Consensus 670 ~mL~v~nLs~~Y~g---~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~---sG~I~~~~~------~~ 737 (986)
T 2iw3_A 670 AIVKVTNMEFQYPG---TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHEN------CR 737 (986)
T ss_dssp EEEEEEEEEECCTT---CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS---EEEEEECTT------CC
T ss_pred ceEEEEeeEEEeCC---CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEcCc------cc
Confidence 46899999998842 1257999999999999999999999999999999999999987 499999863 24
Q ss_pred EEEEcCCCcc----CCCCCHHHHHHHHHHhc------------C------------------------------------
Q 004932 184 YGFVERETTL----IGSLTVREYLYYSALLQ------------L------------------------------------ 211 (723)
Q Consensus 184 ~~yv~Q~~~l----~~~lTV~E~l~~~~~~~------------~------------------------------------ 211 (723)
++|++|+... ....|+.|++.+..... +
T Consensus 738 I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~ 817 (986)
T 2iw3_A 738 IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY 817 (986)
T ss_dssp EEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEE
T ss_pred eEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchh
Confidence 8888887521 12457777765421100 0
Q ss_pred ----------------------------------------------------CCccchHHHHHHHHHHHcCCch-H-hhh
Q 004932 212 ----------------------------------------------------PGFFCQRKNVVEDAIHAMSLSD-Y-ANK 237 (723)
Q Consensus 212 ----------------------------------------------------~~~~~~~~~~v~~~l~~lgL~~-~-~~~ 237 (723)
.......+++++++++.+||.+ . .++
T Consensus 818 e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~ 897 (986)
T 2iw3_A 818 ECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHS 897 (986)
T ss_dssp EEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHS
T ss_pred hhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCC
Confidence 0000011356888999999975 3 455
Q ss_pred hhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCE
Q 004932 238 LIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (723)
Q Consensus 238 ~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (723)
.+ .+|||||||||+|||+|+.+|+||||||||+|||+.+...+++.|+++ +.|||+++|+. +.+.++||+
T Consensus 898 ~~------~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~-e~v~~l~Dr 967 (986)
T 2iw3_A 898 RI------RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSA-EFTKNLTEE 967 (986)
T ss_dssp CG------GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCH-HHHTTTCCE
T ss_pred Cc------cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCH-HHHHHhCCE
Confidence 44 499999999999999999999999999999999999999999888765 56999987775 578899999
Q ss_pred EEEEeCCeEEEEeC
Q 004932 318 ICLLSNGNTLFFGE 331 (723)
Q Consensus 318 v~vL~~G~iv~~G~ 331 (723)
+++|++|+++..|+
T Consensus 968 VivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 968 VWAVKDGRMTPSGH 981 (986)
T ss_dssp EECCBTTBCCC---
T ss_pred EEEEECCEEEEeCC
Confidence 99999999988774
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.4e-32 Score=320.04 Aligned_cols=195 Identities=21% Similarity=0.236 Sum_probs=147.7
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHH----------------------cCCCCCCCceeEEEECCEeCCCC
Q 004932 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA----------------------GRLPHSARMYGEVFVNGAKSEMP 180 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~----------------------G~~~~~~~~~G~I~i~G~~~~~~ 180 (723)
..+|+|||++|++||++||+||||||||||+++|+ |+.++ .|.|.++|.+....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~----~~~i~~~~~~~~~~ 410 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL----DKVIDIDQSPIGRT 410 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC----SEEEECCSSCSCSS
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc----CceeEeccccCCCC
Confidence 35899999999999999999999999999998764 22222 36777777653210
Q ss_pred ----------------------------------------------CceEEEEcCCCccCC-------------------
Q 004932 181 ----------------------------------------------YGSYGFVERETTLIG------------------- 195 (723)
Q Consensus 181 ----------------------------------------------~~~~~yv~Q~~~l~~------------------- 195 (723)
....|++.|+..+++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (670)
T 3ux8_A 411 PRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETL 490 (670)
T ss_dssp TTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHH
T ss_pred CCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhh
Confidence 001233333322222
Q ss_pred -------------CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 196 -------------SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 196 -------------~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
.+||.||+.+... ....+++.+.++.++|.. ..++ ++.+|||||||||+||||
T Consensus 491 ~~~~~~~~~~~~~~ltv~e~l~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~------~~~~LSgG~~qrv~iAra 557 (670)
T 3ux8_A 491 EVTYKGKNIAEVLDMTVEDALDFFAS-------IPKIKRKLETLYDVGLGYMKLGQ------PATTLSGGEAQRVKLAAE 557 (670)
T ss_dssp TCCBTTBCHHHHHTSBHHHHHHHTTT-------CHHHHHHHHHHHHTTCTTSBTTC------CGGGCCHHHHHHHHHHHH
T ss_pred heeecCCCHHHHhhCCHHHHHHHHHH-------hhhHHHHHHHHHHcCCchhhccC------CchhCCHHHHHHHHHHHH
Confidence 4789999876321 123345677888999864 3344 455999999999999999
Q ss_pred HhhCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeCh
Q 004932 262 LVMRP---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGET 332 (723)
Q Consensus 262 L~~~P---~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~ 332 (723)
|+.+| +||||||||+|||+.++..++++|++++++|+|||+++|++. .+ ..||||++| ++|++++.|++
T Consensus 558 L~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~i~~l~~~~g~~~G~i~~~g~~ 635 (670)
T 3ux8_A 558 LHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-VI-KTADYIIDLGPEGGDRGGQIVAVGTP 635 (670)
T ss_dssp HHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSGGGCCEEEEEECH
T ss_pred HhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HH-HhCCEEEEecCCcCCCCCEEEEecCH
Confidence 99987 599999999999999999999999999988999999888864 44 679999999 89999999999
Q ss_pred hHHH
Q 004932 333 LACL 336 (723)
Q Consensus 333 ~~~~ 336 (723)
+++.
T Consensus 636 ~~~~ 639 (670)
T 3ux8_A 636 EEVA 639 (670)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9874
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-31 Score=307.00 Aligned_cols=187 Identities=19% Similarity=0.179 Sum_probs=143.4
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCCC-------CCceEE
Q 004932 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSEM-------PYGSYG 185 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~-----------i~G~~~~~-------~~~~~~ 185 (723)
..|++++ .+++||++||+||||||||||||+|+|+++|+. |+|. +.|..... ......
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~---G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 167 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAI 167 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCT---TTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCC---ceEecccchhhhhheecChhhhhhhhHHHHHhhhhh
Confidence 4677777 589999999999999999999999999999975 8872 33321100 000112
Q ss_pred EEcCCCcc------CCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHH
Q 004932 186 FVERETTL------IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 186 yv~Q~~~l------~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (723)
+.+|.... -+..++.+++... . ....++++++++.+||.+..++.++ +|||||||||+||
T Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~~l~~~----~----~~~~~~~~~~l~~~gl~~~~~~~~~------~LSgGe~Qrv~iA 233 (608)
T 3j16_B 168 IKPQYVDNIPRAIKGPVQKVGELLKLR----M----EKSPEDVKRYIKILQLENVLKRDIE------KLSGGELQRFAIG 233 (608)
T ss_dssp EECCCTTTHHHHCSSSSSHHHHHHHHH----C----CSCHHHHHHHHHHHTCTGGGGSCTT------TCCHHHHHHHHHH
T ss_pred hchhhhhhhhhhhcchhhHHHHHHhhh----h----hhHHHHHHHHHHHcCCcchhCCChH------HCCHHHHHHHHHH
Confidence 33332111 1223566655321 1 1134678999999999988887654 9999999999999
Q ss_pred HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 004932 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (723)
Q Consensus 260 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (723)
+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+. .++..+||+|++|++|..++.
T Consensus 234 raL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl-~~~~~~~drv~vl~~~~~~~~ 302 (608)
T 3j16_B 234 MSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL-SVLDYLSDFVCIIYGVPSVYG 302 (608)
T ss_dssp HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCH-HHHHHHCSEEEEEESCTTTEE
T ss_pred HHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCccccc
Confidence 999999999999999999999999999999999998899999987765 688999999999998765553
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-31 Score=302.49 Aligned_cols=172 Identities=18% Similarity=0.195 Sum_probs=137.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE-----------EECCEeCC-------CCCceEEEEcCC----C
Q 004932 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV-----------FVNGAKSE-------MPYGSYGFVERE----T 191 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I-----------~i~G~~~~-------~~~~~~~yv~Q~----~ 191 (723)
++||++||+||||||||||+|+|+|+++|+. |+| .++|++.. .....+..+.|. +
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~---G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNF---GDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCCT---TCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---CccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 3899999999999999999999999999875 888 56665431 011123444443 2
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 004932 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFI 271 (723)
Q Consensus 192 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlL 271 (723)
.++ ..|++|++... ..+++++++++.+|+.+..++.++ +|||||||||+|||||+.+|+||||
T Consensus 100 ~~~-~~~v~~~l~~~----------~~~~~~~~~l~~l~l~~~~~~~~~------~LSgGe~Qrv~iA~aL~~~p~illl 162 (538)
T 3ozx_A 100 KFL-KGTVNEILTKI----------DERGKKDEVKELLNMTNLWNKDAN------ILSGGGLQRLLVAASLLREADVYIF 162 (538)
T ss_dssp TTC-CSBHHHHHHHH----------CCSSCHHHHHHHTTCGGGTTSBGG------GCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred hhc-cCcHHHHhhcc----------hhHHHHHHHHHHcCCchhhcCChh------hCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 222 34888876321 112347789999999988887654 9999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 004932 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (723)
Q Consensus 272 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (723)
||||++||+.++..+.+.|+++++ |+|||+++|+. .++..+||+|++|++|..+
T Consensus 163 DEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl-~~~~~~~d~i~vl~~~~~~ 216 (538)
T 3ozx_A 163 DQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDL-IVLDYLTDLIHIIYGESSV 216 (538)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCH-HHHHHHCSEEEEEEEETTT
T ss_pred ECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeCh-HHHHhhCCEEEEecCCccc
Confidence 999999999999999999999976 89999987776 6889999999999876543
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-29 Score=298.47 Aligned_cols=201 Identities=19% Similarity=0.220 Sum_probs=151.6
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHH---------HHHHcCCCCCC---Cce------eEEEECCEeCCC-----
Q 004932 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLL---------RAIAGRLPHSA---RMY------GEVFVNGAKSEM----- 179 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL---------~~L~G~~~~~~---~~~------G~I~i~G~~~~~----- 179 (723)
...|+|||+.+++|++++|+|+||||||||+ +.+.|...+.+ ..+ +.+.+++.++..
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 3579999999999999999999999999997 45555433221 012 234444432210
Q ss_pred -----------------------------------------CCceEEEEcCCCccCC-----------------------
Q 004932 180 -----------------------------------------PYGSYGFVERETTLIG----------------------- 195 (723)
Q Consensus 180 -----------------------------------------~~~~~~yv~Q~~~l~~----------------------- 195 (723)
..+..|++.++..++|
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 0112466766665554
Q ss_pred ---------CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 004932 196 ---------SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRP 266 (723)
Q Consensus 196 ---------~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P 266 (723)
.+||.|++.|... .....++.++|+.+||.... . +..+.+|||||||||+|||||+.+|
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~-------~~~~~~~~~~L~~vGL~~~~---l--gq~~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKN-------IPSIKRTLQVLHDVGLGYVK---L--GQPATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTT-------CHHHHHHHHHHHHTTGGGSB---T--TCCSTTCCHHHHHHHHHHHHHTSCC
T ss_pred ccCCHHHHhhCCHHHHHHHHhc-------chhHHHHHHHHHHcCCchhh---c--cCCccCCCHHHHHHHHHHHHHhhCC
Confidence 3678888866321 12345678899999996532 1 2345699999999999999999875
Q ss_pred ---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChhHHHH
Q 004932 267 ---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (723)
Q Consensus 267 ---~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (723)
+||||||||+|||+.++..+++.|++++++|.|||+++|+. +.+ ..||+|++| ++|++++.|+++++.+
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL-~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL-DVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 79999999999999999999999999998899999988876 455 569999999 8999999999999864
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=300.15 Aligned_cols=209 Identities=20% Similarity=0.236 Sum_probs=157.6
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHH-cCC---------CCCC--Ccee---
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA-GRL---------PHSA--RMYG--- 168 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~-G~~---------~~~~--~~~G--- 168 (723)
..++++|++ ...|+|||+.+++||+++|+|+||||||||+++|+ |.+ .++. .+.|
T Consensus 628 ~~L~v~~l~----------~~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~ 697 (972)
T 2r6f_A 628 RWLEVVGAR----------EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH 697 (972)
T ss_dssp CEEEEEEEC----------SSSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGG
T ss_pred eEEEEecCc----------ccccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccc
Confidence 457788774 13799999999999999999999999999999854 211 2221 1234
Q ss_pred ---EEEECCEeCCC-CC-----------------------ceEEEEcCCCccC----------------------C----
Q 004932 169 ---EVFVNGAKSEM-PY-----------------------GSYGFVERETTLI----------------------G---- 195 (723)
Q Consensus 169 ---~I~i~G~~~~~-~~-----------------------~~~~yv~Q~~~l~----------------------~---- 195 (723)
.|.++|.++.. .+ +..||++|...+. +
T Consensus 698 ~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~ 777 (972)
T 2r6f_A 698 LDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYV 777 (972)
T ss_dssp CSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEE
T ss_pred cceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccc
Confidence 57888866421 00 1235665543221 1
Q ss_pred ----------------------------CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-HhhhhhcCCCCCC
Q 004932 196 ----------------------------SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMK 246 (723)
Q Consensus 196 ----------------------------~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~ 246 (723)
.+||.|++.|.. .. ....++.++++.+||.. ..++. +.
T Consensus 778 ~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~--~~-----~~~~~~~~~L~~~gL~~~~l~~~------~~ 844 (972)
T 2r6f_A 778 PCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFA--SI-----PKIKRKLETLYDVGLGYMKLGQP------AT 844 (972)
T ss_dssp ECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTC--SC-----HHHHHHHHHHHHTTCSSSBTTCC------GG
T ss_pred cccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHh--cc-----hhHHHHHHHHHHcCCCcccccCc------hh
Confidence 357777776521 11 12234678999999986 55554 45
Q ss_pred CCCHHHHHHHHHHHHHhhCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE--
Q 004932 247 GLPCGERRRVRIARELVMRP---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL-- 321 (723)
Q Consensus 247 ~LSGGerqRv~IA~aL~~~P---~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL-- 321 (723)
.|||||||||+||++|+.+| +||||||||+|||+.++..+++.|++++++|.|||+++|+. ..+ ..||+|++|
T Consensus 845 ~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl-~~i-~~aDrIivL~p 922 (972)
T 2r6f_A 845 TLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL-DVI-KTADYIIDLGP 922 (972)
T ss_dssp GCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEECS
T ss_pred hCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-HhCCEEEEEcC
Confidence 99999999999999999865 99999999999999999999999999998899999988886 344 689999999
Q ss_pred ----eCCeEEEEeChhHHHH
Q 004932 322 ----SNGNTLFFGETLACLQ 337 (723)
Q Consensus 322 ----~~G~iv~~G~~~~~~~ 337 (723)
++|++++.|+++++..
T Consensus 923 ~gG~~~G~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 923 EGGDRGGQIVAVGTPEEVAE 942 (972)
T ss_dssp SSTTSCCSEEEEESHHHHHT
T ss_pred CCCCCCCEEEEecCHHHHHh
Confidence 7899999999988754
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=299.34 Aligned_cols=208 Identities=22% Similarity=0.206 Sum_probs=155.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHH-HHcCC-------CC--C----------
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRA-IAGRL-------PH--S---------- 163 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~-L~G~~-------~~--~---------- 163 (723)
..++++|+++ ..|+|||+.+++||++||+|+||||||||+++ |+|++ ++ +
T Consensus 501 ~~L~v~~l~~----------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~ 570 (842)
T 2vf7_A 501 GWLELNGVTR----------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHT 570 (842)
T ss_dssp CEEEEEEEEE----------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC----------------
T ss_pred ceEEEEeeee----------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccc
Confidence 4688999864 26999999999999999999999999999996 77543 12 0
Q ss_pred ---CCcee-------EEEECCEeCCCCCc----------------------------------------------eEEEE
Q 004932 164 ---ARMYG-------EVFVNGAKSEMPYG----------------------------------------------SYGFV 187 (723)
Q Consensus 164 ---~~~~G-------~I~i~G~~~~~~~~----------------------------------------------~~~yv 187 (723)
....| .|.++|.++....+ ..|++
T Consensus 571 ~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~ 650 (842)
T 2vf7_A 571 AGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWV 650 (842)
T ss_dssp -CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEE
T ss_pred cccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCcc
Confidence 01356 78898875421100 01122
Q ss_pred cCCCccCC------------------------CCC--------HHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchH-
Q 004932 188 ERETTLIG------------------------SLT--------VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY- 234 (723)
Q Consensus 188 ~Q~~~l~~------------------------~lT--------V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~- 234 (723)
..+..+++ ..+ +.|++.|. .. ....+++.++++.+||...
T Consensus 651 ~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~-----~~--~~~~~~~~~~L~~~gL~~~~ 723 (842)
T 2vf7_A 651 MVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFF-----AD--ESAIFRALDTLREVGLGYLR 723 (842)
T ss_dssp EETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHT-----TT--SHHHHHHHHHHHHTTCTTSB
T ss_pred chhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHh-----hc--chHHHHHHHHHHHcCCCccc
Confidence 11112222 234 44444331 11 1223568899999999763
Q ss_pred hhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHH
Q 004932 235 ANKLIGGHCYMKGLPCGERRRVRIARELVMR---PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEV 311 (723)
Q Consensus 235 ~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~---P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i 311 (723)
.++ .+..|||||||||+||++|+.+ |+||||||||+|||+.+...++++|++++++|.|||+++|+. +++
T Consensus 724 l~~------~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl-~~i 796 (842)
T 2vf7_A 724 LGQ------PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKM-QVV 796 (842)
T ss_dssp TTC------CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH
T ss_pred ccC------CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH
Confidence 444 3459999999999999999996 799999999999999999999999999998899999988876 466
Q ss_pred HhcCCEEEEE------eCCeEEEEeChhHHH
Q 004932 312 FGLFDRICLL------SNGNTLFFGETLACL 336 (723)
Q Consensus 312 ~~~~D~v~vL------~~G~iv~~G~~~~~~ 336 (723)
..||+|++| ++|++++.|+++++.
T Consensus 797 -~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 797 -AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp -TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred -HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 789999999 799999999998864
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.8e-31 Score=294.14 Aligned_cols=185 Identities=13% Similarity=0.115 Sum_probs=146.6
Q ss_pred eceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-E-EEECCEeCCCCCceEEEEcCCCc---cCCCCCHHH
Q 004932 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG-E-VFVNGAKSEMPYGSYGFVERETT---LIGSLTVRE 201 (723)
Q Consensus 127 ~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G-~-I~i~G~~~~~~~~~~~yv~Q~~~---l~~~lTV~E 201 (723)
.++|+.+++|++++|+||||||||||+|+|+|+.+++ +| + |.++|. ..+.++|++|+.. +.+.+||+|
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~----~~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD----PQQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC----TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC----ccCCeeeeccchhhcccccccchhh
Confidence 4789999999999999999999999999999999876 49 8 999983 2456899999974 445679999
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH--HhhCCcE----EEEeC-C
Q 004932 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE--LVMRPHV----LFIDE-P 274 (723)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a--L~~~P~l----LlLDE-P 274 (723)
|+ ++...... . ..++++.++++.+|+.+..+ + .+|||||||||+|||+ |+.+|++ ||||| |
T Consensus 202 ni-~~~~~~~~-~--~~~~~~~~ll~~~gl~~~~~--~------~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpP 269 (460)
T 2npi_A 202 PT-WGQSLTSG-A--TLLHNKQPMVKNFGLERINE--N------KDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPS 269 (460)
T ss_dssp TT-CSCBCBSS-C--CSSCCBCCEECCCCSSSGGG--C------HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCC
T ss_pred hh-cccccccC-c--chHHHHHHHHHHhCCCcccc--h------hhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCc
Confidence 88 54321111 0 11233556778888877654 2 3899999999999999 9999999 99999 9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh--H---HHHhcCCE-----EEEEe-CCeEEEEeChhHH
Q 004932 275 LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS--T---EVFGLFDR-----ICLLS-NGNTLFFGETLAC 335 (723)
Q Consensus 275 TsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~--~---~i~~~~D~-----v~vL~-~G~iv~~G~~~~~ 335 (723)
|++||+. ...+.+++++ .+.|+|+++|+.. . ++.++||+ |++|+ +|+++ .|+++++
T Consensus 270 ts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 270 ISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp GGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred ccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 9999999 4444444443 3778888888864 1 56689999 99999 99999 9998765
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-27 Score=261.51 Aligned_cols=202 Identities=13% Similarity=0.088 Sum_probs=142.5
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC-----------------------------------CCcee
Q 004932 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-----------------------------------ARMYG 168 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~-----------------------------------~~~~G 168 (723)
.+++++++.+.+| +++|+|||||||||||++|+++.... ..-.|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4789999999999 99999999999999999998876421 01148
Q ss_pred EEEECCEeCCC------CCceEEEEcCCCccCCCCCHHHHHHHHHHhc-----------------------CCCc-----
Q 004932 169 EVFVNGAKSEM------PYGSYGFVERETTLIGSLTVREYLYYSALLQ-----------------------LPGF----- 214 (723)
Q Consensus 169 ~I~i~G~~~~~------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~-----------------------~~~~----- 214 (723)
++.+||++... ....+++++|++.++.. +..+...|.-... +...
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 89999987542 11237999998766532 4444333211100 0000
Q ss_pred -------------------------------cchHHHHHHHHHHHcCCchHh----------------hh---hhcCC--
Q 004932 215 -------------------------------FCQRKNVVEDAIHAMSLSDYA----------------NK---LIGGH-- 242 (723)
Q Consensus 215 -------------------------------~~~~~~~v~~~l~~lgL~~~~----------------~~---~ig~~-- 242 (723)
...-.+.+++.++.+++.+.. ++ .+..+
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 000112344555666554310 00 01100
Q ss_pred ---CCCCC-CCHHHHHHHHHHHHHhhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCC
Q 004932 243 ---CYMKG-LPCGERRRVRIARELVMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 316 (723)
Q Consensus 243 ---~~~~~-LSGGerqRv~IA~aL~~~P--~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D 316 (723)
...+. |||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||+++|++ ++...||
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcC
Confidence 11122 6999999999999999999 9999999999999999999999999998 589999999986 4567899
Q ss_pred EEEEE----eCCeEEEEe
Q 004932 317 RICLL----SNGNTLFFG 330 (723)
Q Consensus 317 ~v~vL----~~G~iv~~G 330 (723)
++++| ++|+++...
T Consensus 364 ~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 364 HHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEeccCCceEEEE
Confidence 99999 999987654
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4e-24 Score=233.63 Aligned_cols=83 Identities=25% Similarity=0.331 Sum_probs=76.4
Q ss_pred CCCCCCHHHHHHHHHHHHHh------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCE
Q 004932 244 YMKGLPCGERRRVRIARELV------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (723)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~------~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (723)
.+.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|++++++|.|||+++|++. . .+.||+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~-~-~~~~d~ 353 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE-F-SEAFDR 353 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH-H-HTTCSC
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH-H-HHhCCE
Confidence 56689999999999999999 699999999999999999999999999999988999999998863 3 678999
Q ss_pred EEEEeCCeEEE
Q 004932 318 ICLLSNGNTLF 328 (723)
Q Consensus 318 v~vL~~G~iv~ 328 (723)
+++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999974
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-27 Score=241.11 Aligned_cols=143 Identities=20% Similarity=0.200 Sum_probs=98.2
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC--EeCCCCCceEEEEcCCCccCCCCCH
Q 004932 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG--AKSEMPYGSYGFVERETTLIGSLTV 199 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G--~~~~~~~~~~~yv~Q~~~l~~~lTV 199 (723)
.+.+|+|| ++||+++|+||||||||||+|+|+|+ +|++ |+|.... .+.....+.++|++|++
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~---G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQS---KQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHT---TSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcC---CeeeeEEecCCchhhhcceEEecCCH--------
Confidence 45689986 79999999999999999999999999 8764 7773211 11112235689999975
Q ss_pred HHHH-HHHHH--hcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 004932 200 REYL-YYSAL--LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (723)
Q Consensus 200 ~E~l-~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTs 276 (723)
+||+ .+... ...... ...++++++++. +| ||||||+|||||+.+|++|||||||+
T Consensus 76 ~enl~~~~~~~~~~~~~~--~~~~~~~~~l~~------------------gl--Gq~qrv~lAraL~~~p~lllLDEPts 133 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRDM--VEPEVIPKLMEA------------------GI--VEVAPLAYMRGRTLNDAFVILDEAQN 133 (208)
T ss_dssp ----CTTTHHHHHHHTTT--SCTTHHHHHHHT------------------TS--EEEEEGGGGTTCCBCSEEEEECSGGG
T ss_pred HHHHHHHHHHHHHHHHHh--ccHHHHHHHHHh------------------CC--chHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 4444 22100 000000 011233444432 22 99999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 004932 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (723)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (723)
| ++..+++.|+++ ++|+||| ++|++.
T Consensus 134 ~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 134 T----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp C----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred c----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9 899999999998 6789999 889864
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-25 Score=216.00 Aligned_cols=146 Identities=14% Similarity=0.126 Sum_probs=99.1
Q ss_pred ceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccC-CCCCHHHHHHHH
Q 004932 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI-GSLTVREYLYYS 206 (723)
Q Consensus 128 ~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~-~~lTV~E~l~~~ 206 (723)
|||+.+++||+++|+||||||||||+|++.+ |...+++.. ..++++|+..-. ..-++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~---------~~~~~~~d~------~~g~~~~~~~~~~~~~~~~~~~~-- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK---------PTEVISSDF------CRGLMSDDENDQTVTGAAFDVLH-- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC---------GGGEEEHHH------HHHHHCSSTTCGGGHHHHHHHHH--
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc---------CCeEEccHH------HHHHhcCcccchhhHHHHHHHHH--
Confidence 6899999999999999999999999998653 111121110 114444542110 0001111111
Q ss_pred HHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH-----
Q 004932 207 ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV----- 281 (723)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~----- 281 (723)
. ..+.....|.....+. ....|||||||++|||+|+.+|++|+|||||++||+.
T Consensus 64 -------------~-~~~~~~~~g~~~~~~~-------~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 -------------Y-IVSKRLQLGKLTVVDA-------TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp -------------H-HHHHHHHTTCCEEEES-------CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred -------------H-HHHHHHhCCCeEEEEC-------CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 1 1111223344333332 2356999999999999999999999999999999999
Q ss_pred -----------HHHHHHHHHHHHHHcCCEEEEEEeCChHHHH
Q 004932 282 -----------SALLMMVTLKKLASTGCTLLFTINQSSTEVF 312 (723)
Q Consensus 282 -----------~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~ 312 (723)
.+..+.+.|++++++|.|+|+++|++. ++.
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~-~~~ 163 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE-EVE 163 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH-HHH
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH-Hhh
Confidence 668999999999878999999998863 443
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-24 Score=229.77 Aligned_cols=88 Identities=19% Similarity=0.140 Sum_probs=73.3
Q ss_pred CCCCCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEE-
Q 004932 244 YMKGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI- 318 (723)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~----~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v- 318 (723)
.+..||||||||++||++|+ .+|++|||||||++||+..+..+.+.|++++ +|.++|+++|++ ++.+.||++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~~~ 292 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADLLH 292 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSEEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCceEE
Confidence 45689999999999999997 5789999999999999999999999999985 578999999985 467899987
Q ss_pred -EEEeCCeE-EEEeChhH
Q 004932 319 -CLLSNGNT-LFFGETLA 334 (723)
Q Consensus 319 -~vL~~G~i-v~~G~~~~ 334 (723)
++|.+|+. +.....++
T Consensus 293 ~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEESSSCEEEEECCC--
T ss_pred EEEEeCCEEEEEEEEcch
Confidence 78887754 44444444
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-26 Score=252.04 Aligned_cols=171 Identities=12% Similarity=0.159 Sum_probs=134.0
Q ss_pred ccceeeceeeEEeCCc--------------------EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 004932 122 SDKVVKSSNGYALPGT--------------------MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge--------------------~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~ 181 (723)
.+.+|++||+.+++|+ ++||+||||||||||+|+|+|+.+|+. |+|.++|.+.. +
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~---GsI~~~g~~~t--~ 109 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEE---GAAKTGVVEVT--M 109 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTST---TSCCCCC------C
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccC---ceEEECCeecc--e
Confidence 4568999999999999 999999999999999999999999875 99999987542 1
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHH--HHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG--ERRRVRIA 259 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGG--erqRv~IA 259 (723)
.++++|++ .++.+|+.|++.+.. .+.+++++++.+++.+.. . .+ .|||| ||||+.||
T Consensus 110 --~~~v~q~~-~~~~ltv~D~~g~~~----------~~~~~~~~L~~~~L~~~~-~------~~-~lS~G~~~kqrv~la 168 (413)
T 1tq4_A 110 --ERHPYKHP-NIPNVVFWDLPGIGS----------TNFPPDTYLEKMKFYEYD-F------FI-IISATRFKKNDIDIA 168 (413)
T ss_dssp --CCEEEECS-SCTTEEEEECCCGGG----------SSCCHHHHHHHTTGGGCS-E------EE-EEESSCCCHHHHHHH
T ss_pred --eEEecccc-ccCCeeehHhhcccc----------hHHHHHHHHHHcCCCccC-C------eE-EeCCCCccHHHHHHH
Confidence 27788875 567889988764321 123467889999987542 2 12 29999 99999999
Q ss_pred HHHhh----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HcC----CEEEEEEeCChH-HHHhcCCEE
Q 004932 260 RELVM----------RPHVLFIDEPLYHLDSVSALLMMVTLKKLA-----STG----CTLLFTINQSST-EVFGLFDRI 318 (723)
Q Consensus 260 ~aL~~----------~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~-----~~g----~tvi~t~h~~~~-~i~~~~D~v 318 (723)
++|+. +|++++|||||+|||+.++.++++.|+++. +.| .++++++|.... .+.+++|+|
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 99999 999999999999999999999999999985 333 567777776532 255666655
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-23 Score=205.57 Aligned_cols=147 Identities=18% Similarity=0.131 Sum_probs=103.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCcc
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF 215 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~--~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~ 215 (723)
.++|+||||||||||+|+|+|++.. ...|... .... ...+.++|++|+. ++.+++. .+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i--~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~~----~~~~~-- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKIF----SSKFF-- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEE---EEEC------CCEEEEEET------TCCEEEE----EETTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cCCCEEh---hhhccccccceeEEEeecC------cHHHHHH----HhhcC--
Confidence 5899999999999999999998742 1234221 1111 2235689999875 2222220 00000
Q ss_pred chHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH-----HhhCCcEEEEeC--CCCCCCHHHHHHHHH
Q 004932 216 CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE-----LVMRPHVLFIDE--PLYHLDSVSALLMMV 288 (723)
Q Consensus 216 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a-----L~~~P~lLlLDE--PTsgLD~~~~~~i~~ 288 (723)
.-.+..+ .++..||||||||++||++ |+.+|++|+||| ||++||+..+..+.+
T Consensus 65 --------------~~~~~~~------~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~ 124 (178)
T 1ye8_A 65 --------------TSKKLVG------SYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQ 124 (178)
T ss_dssp --------------CCSSEET------TEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHH
T ss_pred --------------Ccccccc------ccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHH
Confidence 0001222 2455899999999999996 999999999999 999999999999988
Q ss_pred HHHHHHHcCCEEEEEEe--CChHHHHhcCCEEEEEeCCeEEE
Q 004932 289 TLKKLASTGCTLLFTIN--QSSTEVFGLFDRICLLSNGNTLF 328 (723)
Q Consensus 289 ~L~~l~~~g~tvi~t~h--~~~~~i~~~~D~v~vL~~G~iv~ 328 (723)
.|++ .+.|+|+++| |+...+..++|+ .+|++++
T Consensus 125 ~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 125 IMHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 8876 4677888887 677788888998 5567665
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-23 Score=223.14 Aligned_cols=172 Identities=14% Similarity=0.066 Sum_probs=134.2
Q ss_pred eeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------CceEEEEcCCCc-c
Q 004932 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----------YGSYGFVERETT-L 193 (723)
Q Consensus 126 L~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~-----------~~~~~yv~Q~~~-l 193 (723)
++++|+.+++|++++|+||||||||||+++|+|++++.+ |+|.++|.+.... +..++|++|++. +
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~---g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG---TKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 356888899999999999999999999999999988764 9999999764321 125899999988 8
Q ss_pred CCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEE
Q 004932 194 IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPH--VLFI 271 (723)
Q Consensus 194 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~--lLlL 271 (723)
+|.+|++|++.++.... .. ..+++.+|+.+..++.++ +|| |||++|||+|+.+|+ +|+|
T Consensus 167 ~~~~~v~e~l~~~~~~~--~d--------~~lldt~gl~~~~~~~~~------eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEG--YD--------VVLCDTSGRLHTNYSLME------ELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp CHHHHHHHHHHHHHHTT--CS--------EEEECCCCCSSCCHHHHH------HHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred CHHHHHHHHHHHHHHcC--Cc--------chHHhcCCCCcchhHHHH------HHH---HHHHHHHHhhccCCCeeEEEE
Confidence 89999999998754211 00 134567788777776654 899 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCCh--------HHHHhcCCEEEEEeCCeE
Q 004932 272 DEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSS--------TEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 272 DEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~--------~~i~~~~D~v~vL~~G~i 326 (723)
| ||+|||+..+ ++++. +.|.|+|+++|.+. ..+....+.|.++..|+.
T Consensus 228 D-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 228 D-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred e-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9 9999998865 34565 35899999888442 334456778888888864
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-25 Score=224.58 Aligned_cols=177 Identities=13% Similarity=0.102 Sum_probs=118.4
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CCCCceEEEEcCCCccCCCCCHHH
Q 004932 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EMPYGSYGFVERETTLIGSLTVRE 201 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~-~~~~~~~~yv~Q~~~l~~~lTV~E 201 (723)
..+++| ..+++||+++|+||||||||||+|+|+|+++. +.+.+.+.+.+. ....+.++|++|+..+++.+|+.|
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcccccCCCeeEecCHHHHHHHHhcC
Confidence 456777 68889999999999999999999999999852 223332323221 112346899999988888888877
Q ss_pred HHHHHHHh----cCCCc-cchHHHHHHHH------HHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEE
Q 004932 202 YLYYSALL----QLPGF-FCQRKNVVEDA------IHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLF 270 (723)
Q Consensus 202 ~l~~~~~~----~~~~~-~~~~~~~v~~~------l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLl 270 (723)
++...... ...+. ..+.++++++. ++.+|+.+..++. ++.|| +|+.+|++++
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~------~~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTM------PEAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHC------TTSEE-----------EEEECSCHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhc------CCcEE-----------EEEECCCHHH
Confidence 65321000 00000 01123344444 5556666666654 34788 8999999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEe
Q 004932 271 IDEPLYHL----DSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS 322 (723)
Q Consensus 271 LDEPTsgL----D~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (723)
|||||+|| |+..+.++.+.++++++ .|.|+|+++|+. +++.++||+|++|.
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRL-ESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSH-HHHHHHHHHHHC--
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCH-HHHHHHHHHHHHhc
Confidence 99999998 78899999999999984 589999987765 68999999999984
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=7.6e-25 Score=232.55 Aligned_cols=168 Identities=12% Similarity=0.107 Sum_probs=126.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (723)
++++||++.|. +.+|+++|+.+++|++++|+||||||||||+++|+|++ . |+|. +
T Consensus 102 i~~~~vs~~y~------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~--~----G~I~-------------~ 156 (305)
T 2v9p_A 102 FNYQNIELITF------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL--G----GSVL-------------S 156 (305)
T ss_dssp HHHTTCCHHHH------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH--T----CEEE-------------C
T ss_pred EEEEEEEEEcC------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc--C----ceEE-------------E
Confidence 67888888763 46999999999999999999999999999999999998 2 8883 4
Q ss_pred EEcCCCccCCCCCHHH-HHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 004932 186 FVERETTLIGSLTVRE-YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (723)
Q Consensus 186 yv~Q~~~l~~~lTV~E-~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~ 264 (723)
|++|++.++. .|++| |+.+. + .. ...+.+.++.+ |.+..+ +..|||||||| ||||+.
T Consensus 157 ~v~q~~~lf~-~ti~~~ni~~~-----~-~~---~~~~~~~i~~~-L~~gld--------g~~LSgGqkQR---ARAll~ 214 (305)
T 2v9p_A 157 FANHKSHFWL-ASLADTRAALV-----D-DA---THACWRYFDTY-LRNALD--------GYPVSIDRKHK---AAVQIK 214 (305)
T ss_dssp GGGTTSGGGG-GGGTTCSCEEE-----E-EE---CHHHHHHHHHT-TTGGGG--------TCCEECCCSSC---CCCEEC
T ss_pred EecCcccccc-ccHHHHhhccC-----c-cc---cHHHHHHHHHH-hHccCC--------ccCcCHHHHHH---HHHHhC
Confidence 5678777775 47776 66431 1 11 11345556653 433333 34899999999 999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHhhh
Q 004932 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 341 (723)
Q Consensus 265 ~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~ 341 (723)
+|+||| ||+||+.++..+..+ +|.+ ...+.||+| +|++|++++.|+.+++...|.+
T Consensus 215 ~p~iLl----Ts~LD~~~~~~i~~l--------------tH~~--~~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 215 APPLLV----TSNIDVQAEDRYLYL--------------HSRV--QTFRFEQPC-TDESGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp CCCEEE----EESSCSTTCGGGGGG--------------TTTE--EEEECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred CCCEEE----ECCCCHHHHHHHHHH--------------hCCH--HHHHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence 999999 999999999888621 4544 345789999 9999999999999988555544
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.5e-23 Score=215.46 Aligned_cols=145 Identities=17% Similarity=0.193 Sum_probs=97.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCcc
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF 215 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~ 215 (723)
.++|+||||||||||+|+|+|+.+|+. |+|.++|++... ..+.++|++|++.+++.+||.||+.|+.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~---G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~---- 76 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRK---ASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN---- 76 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCC---CccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc----
Confidence 489999999999999999999998874 999999986532 23579999999999999999999977542221
Q ss_pred chHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 004932 216 CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS 295 (723)
Q Consensus 216 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~ 295 (723)
....+.+.+.++ .+..+...+ +||||||||++|||+++. ++++|||++|||+.. .+.++.+.+
T Consensus 77 ~~~~~~i~~~~~----~~~~~~~~~------~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 77 ENCWEPIEKYIN----EQYEKFLKE------EVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp TTCSHHHHHHHH----HHHHHHHHH------HSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred HHHHHHHHHHHH----HHHHhhhHH------hcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 111223444443 455666554 899999999999999886 999999999999987 566667766
Q ss_pred cCCEEEEEEeCC
Q 004932 296 TGCTLLFTINQS 307 (723)
Q Consensus 296 ~g~tvi~t~h~~ 307 (723)
. .++|+++|.-
T Consensus 140 ~-~~vI~Vi~K~ 150 (270)
T 3sop_A 140 V-VNIIPVIAKA 150 (270)
T ss_dssp T-SEEEEEETTG
T ss_pred c-CcEEEEEecc
Confidence 5 8888888764
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-22 Score=218.09 Aligned_cols=171 Identities=14% Similarity=0.080 Sum_probs=134.8
Q ss_pred eceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------CceEEEEcCCCc-cC
Q 004932 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----------YGSYGFVERETT-LI 194 (723)
Q Consensus 127 ~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~-----------~~~~~yv~Q~~~-l~ 194 (723)
..+|+.+++|++++|+||||||||||++.|+|++++.+ |+|.++|.+.... +..++|++|++. ++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~---G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG---TKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccC---CEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 46888899999999999999999999999999988764 9999999764321 135899999988 88
Q ss_pred CCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEe
Q 004932 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPH--VLFID 272 (723)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~--lLlLD 272 (723)
|.+|++|++.++..... . ..+++.+|+.+..++.+. +|| |||++|||+|+.+|+ +|+||
T Consensus 225 p~~tv~e~l~~~~~~~~--d--------~~lldt~Gl~~~~~~~~~------eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 225 AATVLSKAVKRGKEEGY--D--------VVLCDTSGRLHTNYSLME------ELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHHTTC--S--------EEEEECCCCSSCCHHHHH------HHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhhHHHHHHHHHhCCC--H--------HHHHHhcCCChhhhhHHH------HHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 99999999987642110 0 134566788777666654 899 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCCh--------HHHHhcCCEEEEEeCCeE
Q 004932 273 EPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSS--------TEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 273 EPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~--------~~i~~~~D~v~vL~~G~i 326 (723)
||+|||+..+. +++.+ .|.|+|+++|.+. ..+....+.|..+..|+.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99999988653 45553 5899999888542 234456778888888864
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.8e-20 Score=199.10 Aligned_cols=84 Identities=13% Similarity=0.010 Sum_probs=74.0
Q ss_pred CCC-CCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHh
Q 004932 244 YMK-GLPCGERRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 313 (723)
Q Consensus 244 ~~~-~LSGGerqRv~IA~aL~---------~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~ 313 (723)
.++ .||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|+++| +. .
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th-~~-~--- 332 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTE-LA-P--- 332 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESS-CC-T---
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEe-cc-c---
Confidence 345 69999999999999999 8999999999999999999999999998874 57776666 43 2
Q ss_pred cCCEEEEEeCCeEEEEeChhHH
Q 004932 314 LFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 314 ~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
.+|++++|++|+++..|+++++
T Consensus 333 ~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp TCSEEEEEETTEEEECCCTTTS
T ss_pred cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998764
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-21 Score=209.79 Aligned_cols=130 Identities=18% Similarity=0.160 Sum_probs=105.1
Q ss_pred eeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCceEEEEcCCCccCCCCCHHH
Q 004932 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYGSYGFVERETTLIGSLTVRE 201 (723)
Q Consensus 125 iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~E 201 (723)
+++++|+.+++|++++|+||||||||||+++|+|+++|+. |.|.++|.+.-. ..+.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~---g~i~i~~~~e~~~~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE---RIISIEDTEEIVFKHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTS---CEEEEESSCCCCCSSCSSEEEEEC-------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCC---cEEEECCeeccccccchhEEEEEe-------------
Confidence 7999999999999999999999999999999999999874 999999853100 001111110
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 004932 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281 (723)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~ 281 (723)
+ |||+||++||+||..+|++|++||||+
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~----- 251 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS----- 251 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-----
Confidence 1 799999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004932 282 SALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 282 ~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
.++.+.|+.+...+.|+++|+|.++ +.+.+||+++|.+|+.
T Consensus 252 --~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 252 --SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp --THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred --HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 2456778777654558999999985 6778999999988753
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.80 E-value=4e-24 Score=217.01 Aligned_cols=171 Identities=12% Similarity=0.115 Sum_probs=109.3
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------CCceEEEEcCCCccCCCC
Q 004932 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------PYGSYGFVERETTLIGSL 197 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------~~~~~~yv~Q~~~l~~~l 197 (723)
.-|+|||+.+++|++++|+||||||||||+++|+|+. | |+|.+ |.+... ..+.++|++|++.+++.+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 4689999999999999999999999999999999987 4 77888 654211 124678999987666543
Q ss_pred C-HHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHH-----HHHHhhCCcEEEE
Q 004932 198 T-VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI-----ARELVMRPHVLFI 271 (723)
Q Consensus 198 T-V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I-----A~aL~~~P~lLlL 271 (723)
+ +.+++.+. ... ..........++++++...+. ..+ .+||||||||++| +++++.+|++++|
T Consensus 84 ~~~~~~l~~~-~~~-~~~~g~~~~~i~~~l~~~~~~-il~---------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 84 LKNEDFLEYD-NYA-NNFYGTLKSEYDKAKEQNKIC-LFE---------MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp HHTTCEEEEE-EET-TEEEEEEHHHHHHHHHTTCEE-EEE---------ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred hhccchhhhh-hcc-cccCCCcHHHHHHHHhCCCcE-EEE---------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 2 11111100 000 000111234567777654321 111 3799999999999 8999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 004932 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (723)
Q Consensus 272 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (723)
||||+++|..+...+.+.|+++.++ .+ .+| ...||.|+++++
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~-~~---~~h------~~~~d~iiv~~~ 193 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIE-LH---EAN------LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHH-HH---HHT------TSCCSEEEECSS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHH-HH---hhc------ccCCCEEEECCC
Confidence 9999999999999999999887643 22 123 145787776653
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.8e-23 Score=228.02 Aligned_cols=190 Identities=11% Similarity=0.017 Sum_probs=148.2
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCCC--
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA---KSEM-- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~---~~~~-- 179 (723)
.++++++++.|.. +.++|+++ +.+.+||+++|+||||||||||+++|+|+.+++ .|.|.++|+ +...
T Consensus 131 ~l~~~~v~~~~~t----g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~ 202 (438)
T 2dpy_A 131 PLQRTPIEHVLDT----GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFI 202 (438)
T ss_dssp TTTSCCCCSBCCC----SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHH
T ss_pred ceEEeccceecCC----CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHH
Confidence 4678888877741 35799999 999999999999999999999999999999886 499999997 3211
Q ss_pred --------CCceEEEEcCC-CccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCH
Q 004932 180 --------PYGSYGFVERE-TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (723)
Q Consensus 180 --------~~~~~~yv~Q~-~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSG 250 (723)
..+.++|++|+ +.+++.+||.+|+.+.+...... .+ ......+ ....+|+
T Consensus 203 ~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-----~~---------~v~~~ld-------~l~~lS~ 261 (438)
T 2dpy_A 203 ENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-----GQ---------HVLLIMD-------SLTRYAM 261 (438)
T ss_dssp HTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-----TC---------EEEEEEE-------CHHHHHH
T ss_pred HhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-----CC---------CHHHHHH-------hHHHHHH
Confidence 12468999995 56677889999997765321000 00 0011111 1237999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH---c-CC-----EEEEEEeCChHHHHhcCCEEEEE
Q 004932 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS---T-GC-----TLLFTINQSSTEVFGLFDRICLL 321 (723)
Q Consensus 251 GerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~---~-g~-----tvi~t~h~~~~~i~~~~D~v~vL 321 (723)
|| |||+|| +.+|++ |+|||+.+...+.++++++.+ + |. ||++++|+.. ..+||++++|
T Consensus 262 g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l 328 (438)
T 2dpy_A 262 AQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAI 328 (438)
T ss_dssp HH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHH
T ss_pred HH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEE
Confidence 99 999999 889988 999999999999999999876 3 64 8888888765 5679999999
Q ss_pred eCCeEEEEeChhHHH
Q 004932 322 SNGNTLFFGETLACL 336 (723)
Q Consensus 322 ~~G~iv~~G~~~~~~ 336 (723)
.+|+++..|++.++.
T Consensus 329 ~dG~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 329 LDGHIVLSRRLAEAG 343 (438)
T ss_dssp SSEEEEECHHHHHTT
T ss_pred eCcEEEEeCCHHHcc
Confidence 999999999877653
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.4e-20 Score=221.80 Aligned_cols=162 Identities=22% Similarity=0.233 Sum_probs=125.5
Q ss_pred HHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccc-------hHHHHHH
Q 004932 151 TLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFC-------QRKNVVE 223 (723)
Q Consensus 151 TLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~-------~~~~~v~ 223 (723)
|...|..+++.+.. |+|.++|+++. -+..+||.|++.|...+.+..... +..++..
T Consensus 383 ~C~~C~g~rl~~~~---~~V~i~G~~i~--------------~~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 445 (916)
T 3pih_A 383 TCSVCGGRRLNREA---LSVKINGLNIH--------------EFTELSISEELEFLKNLNLTEREREIVGELLKEIEKRL 445 (916)
T ss_dssp ECTTTCSCCBCTTG---GGEEETTEEHH--------------HHHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHH
T ss_pred cchhcccccCChHh---cCcEECCccHH--------------HhhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHH
Confidence 34455666677654 99999998642 133578999988755443322110 1113345
Q ss_pred HHHHHcCCchH-hhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 004932 224 DAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMRPH--VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300 (723)
Q Consensus 224 ~~l~~lgL~~~-~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~--lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tv 300 (723)
+.++.+||... .++.+ .+|||||||||+|||+|+.+|+ +|||||||+|||+.....++++|++++++|.||
T Consensus 446 ~~L~~vgL~~l~l~r~~------~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tv 519 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSA------TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTV 519 (916)
T ss_dssp HHHHTTTCTTCBTTSBG------GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEE
T ss_pred HHHHHcCCccccccCCc------ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 67888898754 45544 4999999999999999999887 999999999999999999999999999889999
Q ss_pred EEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChhHHHH
Q 004932 301 LFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (723)
Q Consensus 301 i~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (723)
|+++|+. ..+ ..||+|++| ++|++++.|+++++.+
T Consensus 520 ivVtHd~-~~~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 520 IVVEHDE-EVI-RNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp EEECCCH-HHH-HTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred EEEeCCH-HHH-HhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 9988875 444 559999999 8999999999998764
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.79 E-value=6.5e-19 Score=190.41 Aligned_cols=80 Identities=21% Similarity=0.264 Sum_probs=71.1
Q ss_pred CCCCCCHHHHH------HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCE
Q 004932 244 YMKGLPCGERR------RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (723)
Q Consensus 244 ~~~~LSGGerq------Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (723)
.+..||||||| |+++|++|+.+|++|||||||+|||+..+..+++.|+++.++|.|||+++|++ ++.+.||+
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~ 322 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADH 322 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCE
Confidence 45789999999 67778888889999999999999999999999999999988889999998884 57889999
Q ss_pred EEEEe--CCe
Q 004932 318 ICLLS--NGN 325 (723)
Q Consensus 318 v~vL~--~G~ 325 (723)
+++|. +|.
T Consensus 323 ~~~l~~~~g~ 332 (339)
T 3qkt_A 323 VIRISLENGS 332 (339)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEecCCc
Confidence 99985 554
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.1e-23 Score=219.43 Aligned_cols=123 Identities=12% Similarity=0.047 Sum_probs=97.4
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC
Q 004932 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLP 212 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~ 212 (723)
+++|+++||+||||||||||+++|+|++++.. |. +.+++|+|++.+++. |++||+.+......+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~---G~------------~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~~ 150 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWD---HH------------PRVDLVTTDGFLYPN-AELQRRNLMHRKGFP 150 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTST---TC------------CCEEEEEGGGGBCCH-HHHHHTTCTTCTTSG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccC---CC------------CeEEEEecCccCCcc-cHHHHHHHHHhcCCC
Confidence 78999999999999999999999999987742 32 458999999999888 999998542111111
Q ss_pred CccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 004932 213 GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280 (723)
Q Consensus 213 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~ 280 (723)
.....+.+.+.++.++ .+..+.. +..|||||+||+++|++++.+|+|||+|||++.+|+
T Consensus 151 --~~~d~~~~~~~L~~l~-~~~~~~~------~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 151 --ESYNRRALMRFVTSVK-SGSDYAC------APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp --GGBCHHHHHHHHHHHH-TTCSCEE------EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred --hHHHHHHHHHHHHHhC-CCcccCC------cccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 1123456778888887 4333333 348999999999999999999999999999999986
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-19 Score=206.93 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=119.4
Q ss_pred eeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHh
Q 004932 130 NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALL 209 (723)
Q Consensus 130 s~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~ 209 (723)
++.+.+|++++|+||||||||||+++++|..++. |+ +.+.+++|+.. ..+.++. .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~----G~------------~vi~~~~ee~~----~~l~~~~---~-- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN----KE------------RAILFAYEESR----AQLLRNA---Y-- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----TC------------CEEEEESSSCH----HHHHHHH---H--
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC----CC------------CEEEEEEeCCH----HHHHHHH---H--
Confidence 5689999999999999999999999999987663 32 12345555531 1222222 1
Q ss_pred cCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH-----HHH
Q 004932 210 QLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV-----SAL 284 (723)
Q Consensus 210 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~-----~~~ 284 (723)
+.... +++ +...|+.+..+. .+..|||||+||+++|+++..+|++|++| ||+|||.. .+.
T Consensus 330 ~~g~~-------~~~-~~~~g~~~~~~~------~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~ 394 (525)
T 1tf7_A 330 SWGMD-------FEE-MERQNLLKIVCA------YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQ 394 (525)
T ss_dssp TTSCC-------HHH-HHHTTSEEECCC------CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHH
T ss_pred HcCCC-------HHH-HHhCCCEEEEEe------ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHH
Confidence 11111 122 234566555444 45589999999999999999999999999 99999999 999
Q ss_pred HHHHHHHHHHHcCCEEEEEEeCCh---------HHHHhcCCEEEEEeCCe
Q 004932 285 LMMVTLKKLASTGCTLLFTINQSS---------TEVFGLFDRICLLSNGN 325 (723)
Q Consensus 285 ~i~~~L~~l~~~g~tvi~t~h~~~---------~~i~~~~D~v~vL~~G~ 325 (723)
.+.++++.+++.|.|||+++|+.. ..+..+||+|++|++|+
T Consensus 395 ~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 395 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 999999999989999999999871 35678999999999887
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-20 Score=196.93 Aligned_cols=183 Identities=14% Similarity=0.074 Sum_probs=116.0
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEeCCC--CCceEEEEcCCCccCCCCCH
Q 004932 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG-EVFVNGAKSEM--PYGSYGFVERETTLIGSLTV 199 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G-~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lTV 199 (723)
..+|+++++.+++|++++|+||||||||||++.|+|...+.. | .|.+.+..... ..+++..+.++.. +++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~---G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM---GKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTS---CCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc---CCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 468999999999999999999999999999999999987653 6 56543321110 0011222222211 122
Q ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHH-HHHHHHHHHHhhCCcEEEEeCCCC--
Q 004932 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE-RRRVRIARELVMRPHVLFIDEPLY-- 276 (723)
Q Consensus 200 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe-rqRv~IA~aL~~~P~lLlLDEPTs-- 276 (723)
.+++.... +. ..+..+.++++++..++. . .+.+..+|.+| +||+. |+++..+|++||+||||+
T Consensus 95 ~~~l~~~~-~~----~~~~~~~~~~~l~~~~l~--i------~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 95 SDSLKREI-IE----NGKFDQWFDELFGNDTFH--L------YDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp CHHHHHHH-HH----HTHHHHHHHHHHSSSCEE--E------ECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred ccccccCC-CC----HHHHHHHHHHHhccCCEE--E------ECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 23332210 00 001122333333222221 1 11234789999 66666 999999999999999999
Q ss_pred -C---CCH-HHHHHHHHHHHHHHH-cCCEEEEEEeCC-hH--------------------HHHhcCCEEEEEeCCeE
Q 004932 277 -H---LDS-VSALLMMVTLKKLAS-TGCTLLFTINQS-ST--------------------EVFGLFDRICLLSNGNT 326 (723)
Q Consensus 277 -g---LD~-~~~~~i~~~L~~l~~-~g~tvi~t~h~~-~~--------------------~i~~~~D~v~vL~~G~i 326 (723)
+ +|. .....+++.|+++++ .|.|||+++|.. .. .+.++||+|++|++|+.
T Consensus 161 ~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 161 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 565 677889999999985 499999998885 13 67889999999998875
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=8.6e-21 Score=195.61 Aligned_cols=178 Identities=11% Similarity=0.053 Sum_probs=108.3
Q ss_pred cccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHH
Q 004932 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVR 200 (723)
Q Consensus 121 ~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~ 200 (723)
+++.+|+||||.+++|+++||+||||||||||+++|+|++ |.+.++ ...+.++|++|++ +++.+|+.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-----~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-----QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-----GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-----ccCCceEEEeCCc-CccccCHh
Confidence 4567999999999999999999999999999999999975 223233 1235689999985 77789999
Q ss_pred HHHHHHHHhcCCCccc-hHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 004932 201 EYLYYSALLQLPGFFC-QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279 (723)
Q Consensus 201 E~l~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD 279 (723)
|++.+........... ...+.+.+.++.+ .+..+. .+..||+||+||+.+ ++++.+|+++|+|||...+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~------~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~ 147 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTV------EVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYS 147 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCE------EECCEETTTTEECSS-CEEECCCSEEEEECTTTTTS
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCCe------ecccccccccCccCc-eEEecCCCEEEEeCcccccc
Confidence 9987643221111111 1233445555543 233333 345899999999988 58888999999999998888
Q ss_pred HHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHH
Q 004932 280 SVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (723)
Q Consensus 280 ~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (723)
.. +.++ .+.+|++++|........+++++ ++|+ +.+++.+.
T Consensus 148 ~~--------l~~~--~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~~ 188 (245)
T 2jeo_A 148 QE--------IRDM--FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILTQ 188 (245)
T ss_dssp HH--------HHTT--CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHHH
T ss_pred HH--------HHHh--cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHHH
Confidence 64 2222 37788888886443333344444 5564 45555543
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-21 Score=222.05 Aligned_cols=167 Identities=16% Similarity=0.129 Sum_probs=122.4
Q ss_pred ccceeeceee-EEeCCcEEEEECCCCCcHHHHHHH--HHcCCCCCCCceeEEEECCEeCCC----CCceEEEEcCCCccC
Q 004932 122 SDKVVKSSNG-YALPGTMTVIMGPAKSGKSTLLRA--IAGRLPHSARMYGEVFVNGAKSEM----PYGSYGFVERETTLI 194 (723)
Q Consensus 122 ~~~iL~~vs~-~v~~Ge~~aIlGpsGsGKSTLL~~--L~G~~~~~~~~~G~I~i~G~~~~~----~~~~~~yv~Q~~~l~ 194 (723)
..++|++|++ .+++||+++|+||||||||||+++ ++|+.+|+. |.|.++|++... ..+.+||++|+....
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~---g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~ 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDE---PGVFVTFEETPQDIIKNARSFGWDLAKLVDE 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCC---CEEEEESSSCHHHHHHHHGGGTCCHHHHHHT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCC---CEEEEEEeCCHHHHHHHHHHcCCChHHhhcc
Confidence 4579999999 999999999999999999999999 789988764 999999975311 123578888865422
Q ss_pred CCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 004932 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274 (723)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEP 274 (723)
+. +.+ ...... + ...++++.++|.+..++.+. .||||| |+++++|||
T Consensus 101 ~~------l~~---~~~~~~--~---~~~~~l~~~~l~~~~~~~~~------~LS~g~-------------~~~lilDe~ 147 (525)
T 1tf7_A 101 GK------LFI---LDASPD--P---EGQEVVGGFDLSALIERINY------AIQKYR-------------ARRVSIDSV 147 (525)
T ss_dssp TS------EEE---EECCCC--S---SCCSCCSSHHHHHHHHHHHH------HHHHHT-------------CSEEEEECS
T ss_pred Cc------EEE---EecCcc--c---chhhhhcccCHHHHHHHHHH------HHHHcC-------------CCEEEECCH
Confidence 11 100 010000 0 01223444555556665543 677775 789999999
Q ss_pred CC-----CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHH--------HHhcCCEEEEEeCC
Q 004932 275 LY-----HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE--------VFGLFDRICLLSNG 324 (723)
Q Consensus 275 Ts-----gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~--------i~~~~D~v~vL~~G 324 (723)
|+ +||+..+..+.++++.+++.|+|||+++|+.... +..+||+|++|++|
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 98 4699999999999999998899999999998532 34569999999983
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.6e-20 Score=222.73 Aligned_cols=172 Identities=19% Similarity=0.160 Sum_probs=119.6
Q ss_pred eEEEEe-----EEEEEecccccccceeeceeeEEeC-------CcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 004932 105 SVVWKD-----LTVTIKGKRRYSDKVVKSSNGYALP-------GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172 (723)
Q Consensus 105 ~l~~~~-----ls~~~~~~~~~~~~iL~~vs~~v~~-------Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i 172 (723)
.+.++| |++.+. .++.+++|+++.+.+ |++++|+||||||||||||+| |++.+-
T Consensus 750 ~l~i~~~rHP~l~~~~~----~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--------- 815 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFF----GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM--------- 815 (1022)
T ss_dssp CEEEEEECCCC----------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH---------
T ss_pred eEEEEeccccEEEEEec----CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH---------
Confidence 588999 887763 235799999999987 999999999999999999999 987531
Q ss_pred CCEeCCCCCceEE-EEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHH
Q 004932 173 NGAKSEMPYGSYG-FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (723)
Q Consensus 173 ~G~~~~~~~~~~~-yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGG 251 (723)
.++| ||||+.. .+||.|++. ..+|+.+..... ...+|+|
T Consensus 816 ---------aqiG~~Vpq~~~---~l~v~d~I~----------------------~rig~~d~~~~~------~stf~~e 855 (1022)
T 2o8b_B 816 ---------AQMGCYVPAEVC---RLTPIDRVF----------------------TRLGASDRIMSG------ESTFFVE 855 (1022)
T ss_dssp ---------HTTTCCEESSEE---EECCCSBEE----------------------EECC---------------CHHHHH
T ss_pred ---------hheeEEeccCcC---CCCHHHHHH----------------------HHcCCHHHHhhc------hhhhHHH
Confidence 2234 8888753 345555441 012222222211 1256666
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH-HHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEE--
Q 004932 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSA-LLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTL-- 327 (723)
Q Consensus 252 erqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~-~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv-- 327 (723)
++ ++++|++++.+|+++||||||+|+|+... ..++..|+.++++ |.++|+++|++ +.+..++|++.++ +|++.
T Consensus 856 m~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~~v~-~g~~~~~ 932 (1022)
T 2o8b_B 856 LS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNVAVR-LGHMACM 932 (1022)
T ss_dssp HH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCSSEE-EEEEEEC
T ss_pred HH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcceee-cCeEEEE
Confidence 66 49999999999999999999999999884 5578999999876 89999988886 4677789999887 58887
Q ss_pred EEeChh
Q 004932 328 FFGETL 333 (723)
Q Consensus 328 ~~G~~~ 333 (723)
+.|+++
T Consensus 933 ~~~~~~ 938 (1022)
T 2o8b_B 933 VENECE 938 (1022)
T ss_dssp ------
T ss_pred EecCcc
Confidence 556544
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-18 Score=206.05 Aligned_cols=133 Identities=20% Similarity=0.253 Sum_probs=109.9
Q ss_pred CCCCHHHHHHHHHHhcCCCccc--------hHHHHHHHHHHHcCCchH-hhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 004932 195 GSLTVREYLYYSALLQLPGFFC--------QRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (723)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~--------~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~ 265 (723)
..+||.|++.|...+.++.... +..+++ +.++.+||... .++.+ .+|||||||||+||++|..+
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~------~tLSGGEkQRV~LA~aL~~~ 522 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSA------GTLSGGEAQRIRLATQIGSR 522 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBG------GGCCHHHHHHHHHHHHHTTC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCcc------ccCCHHHHHHHHHHHHHhhC
Confidence 4689999999977766543111 123344 45888999764 56654 49999999999999999998
Q ss_pred C--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChhHHH
Q 004932 266 P--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACL 336 (723)
Q Consensus 266 P--~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~ 336 (723)
| ++|||||||+|||+.....+++.|++|++.|.|||++.|+. +.+ ..||+|++| ++|++++.|+++++.
T Consensus 523 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl-~~i-~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 523 LTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE-DTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp CCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH-HHH-HSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHH-HhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 5 99999999999999999999999999998999999988886 444 579999999 799999999998764
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.7e-19 Score=209.67 Aligned_cols=171 Identities=16% Similarity=0.130 Sum_probs=126.3
Q ss_pred CCCCcHHHHHHHHHcCCCCC---C---CceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhc-------
Q 004932 144 PAKSGKSTLLRAIAGRLPHS---A---RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ------- 210 (723)
Q Consensus 144 psGsGKSTLL~~L~G~~~~~---~---~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~------- 210 (723)
.|..||+||.+.+....-|. . ..+|+|.++|+++.. ...+++.|.+.|...+.
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~--------------~~~~~v~e~~~~~~~~~~~~~~~~ 335 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITE--------------LSRLPLARVSELLRPYAEEREPGH 335 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHH--------------HHHSBHHHHHHHHHHHHTTCSSCS
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHH--------------HhhcCHHHHHHHHHhhhhhhhhcc
Confidence 45679999999887743221 0 134788888875321 01245555555444331
Q ss_pred -----CCCc--------cchHHHHHHHHHHHcCCchH-hhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC--cEEEEeCC
Q 004932 211 -----LPGF--------FCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMRP--HVLFIDEP 274 (723)
Q Consensus 211 -----~~~~--------~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P--~lLlLDEP 274 (723)
+... ..+..++++ .++.+||.+. .++.+ ..|||||||||.||++|+.+| ++|+||||
T Consensus 336 ~~~~~~~~~~~~i~~~i~~ei~~rl~-~L~~vGL~~l~l~r~~------~tLSGGe~QRV~LA~aL~~~p~~~llILDEP 408 (842)
T 2vf7_A 336 AERVKNRPEQAIALQRMAADLVKRLD-VLLHLGLGYLGLDRST------PTLSPGELQRLRLATQLYSNLFGVVYVLDEP 408 (842)
T ss_dssp TTSSSSCSSHHHHHHHHHHHHHHHHH-HHHHTTCTTSBTTCBG------GGSCHHHHHHHHHHHHTTTCCCSCEEEEECT
T ss_pred cchhhcchhhHHHHHHHHHHHHHHHH-HHHhCCCCcCCccCCc------CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCc
Confidence 0000 011334555 6788999865 56644 499999999999999999999 59999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChhHHHH
Q 004932 275 LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (723)
Q Consensus 275 TsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (723)
|+|||+.....+.++|++|++.|.|||++.|+. + +.+.||+|++| ++|++++.|+++++.+
T Consensus 409 T~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl-~-~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 409 SAGLHPADTEALLSALENLKRGGNSLFVVEHDL-D-VIRRADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp TTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH-H-HHTTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH-H-HHHhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 999999999999999999998999999988876 3 55789999999 7999999999987643
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-18 Score=207.39 Aligned_cols=152 Identities=16% Similarity=0.161 Sum_probs=113.1
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHH--------HcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCcc
Q 004932 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--------AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L--------~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l 193 (723)
.+.+++|+++.+++|++++|+||||||||||||++ .|..-|.. +.. ++.+ +.+
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~---~~~-------------~~~~---d~i 708 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCE---SAE-------------VSIV---DCI 708 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEE---EEE-------------EECC---SEE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccc---ccc-------------chHH---HHH
Confidence 45799999999999999999999999999999999 44333321 100 1100 001
Q ss_pred CCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH--hhCCcEEEE
Q 004932 194 IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL--VMRPHVLFI 271 (723)
Q Consensus 194 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL--~~~P~lLlL 271 (723)
+..+|+.+. ..+++|+|+++++.+|++| +.+|+++||
T Consensus 709 --------------------------------~~~ig~~d~---------l~~~lStf~~e~~~~a~il~~a~~~sLlLL 747 (934)
T 3thx_A 709 --------------------------------LARVGAGDS---------QLKGVSTFMAEMLETASILRSATKDSLIII 747 (934)
T ss_dssp --------------------------------EEECC------------------CHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred --------------------------------HHhcCchhh---------HHHhHhhhHHHHHHHHHHHHhccCCcEEEE
Confidence 111222211 1237899999999999988 999999999
Q ss_pred eCCCCCCCHHHHHHH-HHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 272 DEPLYHLDSVSALLM-MVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 272 DEPTsgLD~~~~~~i-~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
||||+|||+.....+ ..+++.+++ .|.++|+++|.. ++..++|++..+.+|++...++.+++
T Consensus 748 DEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp ESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEecCCcE
Confidence 999999999999888 677788876 589999999984 56789999999999999998887664
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-20 Score=202.07 Aligned_cols=185 Identities=15% Similarity=0.124 Sum_probs=132.7
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~------ 178 (723)
.++.+++++.|. .+.++|+++ +.+.+||+++|+||||||||||+++|+|+.+++. |.|.+.|++..
T Consensus 45 ~i~~~~l~~~~~----tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~---g~i~~~G~~~~ev~~~i 116 (347)
T 2obl_A 45 PLLRQVIDQPFI----LGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADI---IVLALIGERGREVNEFL 116 (347)
T ss_dssp STTCCCCCSEEC----CSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSE---EEEEEESCCHHHHHHHH
T ss_pred CeeecccceecC----CCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCE---EEEEEecccHHHHHHHH
Confidence 356778887774 135799999 9999999999999999999999999999998874 99999886410
Q ss_pred -C-----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchH-hhh----hhcCCCCCCC
Q 004932 179 -M-----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-ANK----LIGGHCYMKG 247 (723)
Q Consensus 179 -~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~----~ig~~~~~~~ 247 (723)
. ..+.+.++.|.+. +..+.+. ..+..+.+.++ .+. ..- .+.+..
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~-----~~~~r~~-------------------~~~~~~~~ae~~~~~~~~vl~~-ld~~~~ 171 (347)
T 2obl_A 117 ALLPQSTLSKCVLVVTTSDR-----PALERMK-------------------AAFTATTIAEYFRDQGKNVLLM-MDSVTR 171 (347)
T ss_dssp TTSCHHHHTTEEEEEECTTS-----CHHHHHH-------------------HHHHHHHHHHHHHTTTCEEEEE-EETHHH
T ss_pred HhhhhhhhhceEEEEECCCC-----CHHHHHH-------------------HHHHHHHHHHHHHhccccHHHH-HhhHHH
Confidence 0 0123566665432 1222221 11111111111 110 000 023458
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH--cCC-----EEEEEEeCChHHHHhcCCEEEE
Q 004932 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS--TGC-----TLLFTINQSSTEVFGLFDRICL 320 (723)
Q Consensus 248 LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~--~g~-----tvi~t~h~~~~~i~~~~D~v~v 320 (723)
||+|| |||++| +.+|++ |+|||+.....+.++++++.+ +|. ||++++|+.. ..+||++++
T Consensus 172 lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~ 238 (347)
T 2obl_A 172 YARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRS 238 (347)
T ss_dssp HHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHH
T ss_pred HHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEE
Confidence 99999 899999 688887 999999999999999999974 476 7888777764 567999999
Q ss_pred EeCCeEEEEeChhHH
Q 004932 321 LSNGNTLFFGETLAC 335 (723)
Q Consensus 321 L~~G~iv~~G~~~~~ 335 (723)
|.+|+++..|+.++.
T Consensus 239 i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 239 ILDGHIVLTRELAEE 253 (347)
T ss_dssp HCSEEEEBCHHHHTT
T ss_pred eeCcEEEEeCCHHHc
Confidence 999999999887664
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=8.6e-18 Score=160.15 Aligned_cols=81 Identities=20% Similarity=0.242 Sum_probs=72.9
Q ss_pred CCCCCCHHHHHHHHHH------HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCE
Q 004932 244 YMKGLPCGERRRVRIA------RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (723)
Q Consensus 244 ~~~~LSGGerqRv~IA------~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (723)
.+..||||||||++|| |+|+.+|++|||||||+|||+.++..+.+.|+++.++|.|||+++|++ ++.++||+
T Consensus 54 ~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~ 131 (148)
T 1f2t_B 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADH 131 (148)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSE
T ss_pred ChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCE
Confidence 5569999999999876 899999999999999999999999999999999987799999999986 46789999
Q ss_pred EEEE--eCCeE
Q 004932 318 ICLL--SNGNT 326 (723)
Q Consensus 318 v~vL--~~G~i 326 (723)
+++| .+|..
T Consensus 132 ii~l~~~~g~s 142 (148)
T 1f2t_B 132 VIRISLENGSS 142 (148)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEcCCCeE
Confidence 9999 46643
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.9e-19 Score=178.37 Aligned_cols=154 Identities=14% Similarity=0.137 Sum_probs=93.2
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCC----CceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHH
Q 004932 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA----RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYS 206 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~----~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~ 206 (723)
+-+++||+++|+||||||||||+++|+|...+.. ...|.+.++++.. ...+.++++.|+..+++. |+.||+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~-~~~~~i~~~~~~~~~~~~-~~~~~~--- 94 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT-FRPERIREIAQNRGLDPD-EVLKHI--- 94 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC-CCHHHHHHHHHHTTSCHH-HHHHTE---
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC-CCHHHHHHHHHHcCCCHH-HHhhcE---
Confidence 5788999999999999999999999999544311 0123555554321 000111112221111111 111111
Q ss_pred HHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHH-HHHHHHHHHhh-------CCcEEEEeCCCCCC
Q 004932 207 ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER-RRVRIARELVM-------RPHVLFIDEPLYHL 278 (723)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGer-qRv~IA~aL~~-------~P~lLlLDEPTsgL 278 (723)
. .....+++++ +++..+++++. +|+++++||||++|
T Consensus 95 -----------------------~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l 138 (231)
T 4a74_A 95 -----------------------Y-------------VARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 138 (231)
T ss_dssp -----------------------E-------------EEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHH
T ss_pred -----------------------E-------------EEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHh
Confidence 0 1123344433 34666666666 99999999999999
Q ss_pred CHH-------H-----HHHHHHHHHHHHH-cCCEEEEEEeCCh---HHHHhcCCEEEEEeCCe
Q 004932 279 DSV-------S-----ALLMMVTLKKLAS-TGCTLLFTINQSS---TEVFGLFDRICLLSNGN 325 (723)
Q Consensus 279 D~~-------~-----~~~i~~~L~~l~~-~g~tvi~t~h~~~---~~i~~~~D~v~vL~~G~ 325 (723)
|+. . ..++++.|+++++ .|.|||+++|... ..+.+.+|++++|++|+
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 139 RSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred ccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 984 2 2378888888874 5999999888432 24778999999998753
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-18 Score=181.27 Aligned_cols=133 Identities=20% Similarity=0.232 Sum_probs=97.8
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHH
Q 004932 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (723)
.+|+++| +++|++++|+||||||||||+++|+|+++|+ .+|+|.++|.++. |++|+..-+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~-------~~~~~~~~~--------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-------YVFKHKKSI--------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCC-------SCCCCSSSE---------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcce-------eecCCccee---------
Confidence 4899999 8999999999999999999999999998764 1399999886542 222221000
Q ss_pred HHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 004932 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (723)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~ 283 (723)
..+. .+|+.. ..+ |++||++|..+|++|++|||| |+.+.
T Consensus 75 -----------v~q~---------~~gl~~------------~~l------~~~la~aL~~~p~illlDEp~---D~~~~ 113 (261)
T 2eyu_A 75 -----------VNQR---------EVGEDT------------KSF------ADALRAALREDPDVIFVGEMR---DLETV 113 (261)
T ss_dssp -----------EEEE---------EBTTTB------------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHH
T ss_pred -----------eeHH---------HhCCCH------------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHH
Confidence 0000 122210 122 899999999999999999999 99887
Q ss_pred HHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 004932 284 LLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (723)
Q Consensus 284 ~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (723)
..++ +. ++.|.+|++++|... +...+||+++|..
T Consensus 114 ~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 114 ETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 6544 33 457999999999874 5678999888754
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.9e-20 Score=184.78 Aligned_cols=145 Identities=19% Similarity=0.157 Sum_probs=113.3
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccC--CCCCHHHHHHHHHHhc
Q 004932 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI--GSLTVREYLYYSALLQ 210 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~--~~lTV~E~l~~~~~~~ 210 (723)
.++|++++|+||||||||||+++|+|++.+ .++|++|++.++ ..+|+++++.+. ..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------~i~~v~~d~~~~~~~~~~~~~~~~~~--~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------RVALLPMDHYYKDLGHLPLEERLRVN--YD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------GEEEEEGGGCBCCCTTSCHHHHHHSC--TT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------CeEEEecCccccCcccccHHHhcCCC--CC
Confidence 358999999999999999999999998642 478999988776 567998886432 11
Q ss_pred CCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHH----HHHHHHHHHHhhCCcEEEEeCCCCC-------CC
Q 004932 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE----RRRVRIARELVMRPHVLFIDEPLYH-------LD 279 (723)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe----rqRv~IA~aL~~~P~lLlLDEPTsg-------LD 279 (723)
.+ .....+++.+.++.+++.+..+.. +..+|+|| +||+++|++++.+|.++++||||++ ||
T Consensus 61 ~~--~~~~~~~~~~~l~~~~~~~~~~~~------~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld 132 (211)
T 3asz_A 61 HP--DAFDLALYLEHAQALLRGLPVEMP------VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVD 132 (211)
T ss_dssp SG--GGBCHHHHHHHHHHHHTTCCEEEC------CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEE
T ss_pred Ch--hhhhHHHHHHHHHHHHcCCCcCCC------cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEe
Confidence 11 112345677888888876655543 34799996 4789999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHH-HcCCEEEEEEeCC
Q 004932 280 SVSALLMMVTLKKLA-STGCTLLFTINQS 307 (723)
Q Consensus 280 ~~~~~~i~~~L~~l~-~~g~tvi~t~h~~ 307 (723)
+.....+.+.+++.. +.|.|++.++|+.
T Consensus 133 ~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 133 ADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999998864 5688888777864
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-18 Score=182.68 Aligned_cols=147 Identities=12% Similarity=0.086 Sum_probs=108.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------CceEEEEcCCCccCCCCCHHHHH
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----------YGSYGFVERETTLIGSLTVREYL 203 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~-----------~~~~~yv~Q~~~l~~~lTV~E~l 203 (723)
+|++++|+||||||||||+++|+|+++|++ |+|.++|.+.... +..++|++|+..++|.+|++|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~---g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLG---KKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTT---CCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 699999999999999999999999998875 9999999875321 13589999999999999999999
Q ss_pred HHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 004932 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (723)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~ 283 (723)
.++...... ..+++..|+.+..+.. ++..++||++|||+|+.+|+.++| .||+.+.
T Consensus 178 ~~~~~~~~d----------~~llDt~G~~~~~~~~---------~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 178 QAMKARGYD----------LLFVDTAGRLHTKHNL---------MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHHTCS----------EEEECCCCCCTTCHHH---------HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHHhCCCC----------EEEecCCCCCCchHHH---------HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 765321100 0123334444333332 344458999999999999995444 5565556
Q ss_pred HHHHHHHHHHHH-cCCEEEEEEeCCh
Q 004932 284 LLMMVTLKKLAS-TGCTLLFTINQSS 308 (723)
Q Consensus 284 ~~i~~~L~~l~~-~g~tvi~t~h~~~ 308 (723)
.++++.++++.+ .|.|+|+++|.+.
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 667777888875 4899999899763
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-17 Score=196.88 Aligned_cols=145 Identities=15% Similarity=0.133 Sum_probs=99.7
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 004932 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (723)
++.+++||++.+++|++++|+||||||||||||+|++..-... .| .........++ .-+.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq--~g------~~vpa~~~~i~---~~d~i~~~ig~~- 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ--IG------SYVPAEEATIG---IVDGIFTRMGAA- 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH--HT------CCBSSSEEEEE---CCSEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh--cC------ccccchhhhhh---HHHHHHHhCChH-
Confidence 4679999999999999999999999999999999986421100 01 00000000111 111122222222
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 004932 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281 (723)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~ 281 (723)
+.... ....+|+||+|++.|+++ +.+|+++||||||+|||+.
T Consensus 727 -------------------------------d~l~~------~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~ 768 (918)
T 3thx_B 727 -------------------------------DNIYK------GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTH 768 (918)
T ss_dssp --------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHH
T ss_pred -------------------------------HHHHH------hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHH
Confidence 22222 123789999999999999 8999999999999999999
Q ss_pred HHHHHH-HHHHHHHH-cCCEEEEEEeCChHHHHhcCCEE
Q 004932 282 SALLMM-VTLKKLAS-TGCTLLFTINQSSTEVFGLFDRI 318 (723)
Q Consensus 282 ~~~~i~-~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v 318 (723)
....+. .+++.+++ .|.|+|+++|++ ++.+++|+.
T Consensus 769 ~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~ 805 (918)
T 3thx_B 769 DGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhc
Confidence 999997 78888875 699999998885 455666654
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.3e-18 Score=199.70 Aligned_cols=146 Identities=19% Similarity=0.151 Sum_probs=105.2
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHH
Q 004932 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVR 200 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~-~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~ 200 (723)
++.+++|+|+. |++++|+||||||||||||+|+|+.. +.. |.+. ......+++++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~---G~~v------pa~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQV---GSFV------PAEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTT---TCCB------SSSEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhccc---Ccee------ehhccceeeHHH---hhccCCHH
Confidence 35789999998 99999999999999999999999863 332 5432 111234666655 55556666
Q ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH--hhCCcEEEEeCC---C
Q 004932 201 EYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL--VMRPHVLFIDEP---L 275 (723)
Q Consensus 201 E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL--~~~P~lLlLDEP---T 275 (723)
|++. .++|+|+++++.+|++| +.+|+++||||| |
T Consensus 630 d~l~-----------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGT 668 (765)
T 1ewq_A 630 DDLA-----------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGT 668 (765)
T ss_dssp ----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTS
T ss_pred HHHH-----------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCC
Confidence 5541 16899999999999999 999999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 276 YHLDSVSA-LLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 276 sgLD~~~~-~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
++||..+. ..+++.|++ .|.++|+++|+. +..+++ .-.+.++++....
T Consensus 669 s~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~--~l~~~~--~~~v~n~~~~~~~ 717 (765)
T 1ewq_A 669 SSLDGVAIATAVAEALHE---RRAYTLFATHYF--ELTALG--LPRLKNLHVAARE 717 (765)
T ss_dssp CHHHHHHHHHHHHHHHHH---HTCEEEEECCCH--HHHTCC--CTTEEEEEEEEEC
T ss_pred CCcCHHHHHHHHHHHHHh---CCCEEEEEeCCH--HHHHhh--hhcceEEEEEEEE
Confidence 99998875 567777766 588999988885 344555 2223445554443
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=7.7e-19 Score=186.81 Aligned_cols=161 Identities=16% Similarity=0.159 Sum_probs=84.1
Q ss_pred EeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC-CCCCCCceeEEEECCEeCCC--CCceEE
Q 004932 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR-LPHSARMYGEVFVNGAKSEM--PYGSYG 185 (723)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~-~~~~~~~~G~I~i~G~~~~~--~~~~~~ 185 (723)
+||++.+. ++.+++++++.+ +|+|+||+|||||+++|+|. ..+.. | |.++|.+... ..+.++
T Consensus 2 ~~l~~~~~-----~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~---g-i~~~g~~~~~t~~~~~~~ 66 (301)
T 2qnr_A 2 SNLPNQVH-----RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPER---V-ISGAAEKIERTVQIEAST 66 (301)
T ss_dssp ---------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CE
T ss_pred CCCcceEC-----CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCC---C-cccCCcccCCcceEeeEE
Confidence 35666663 457999999998 99999999999999999997 66653 7 8887765321 124578
Q ss_pred EEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 004932 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (723)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~ 265 (723)
+++|++.+...+||.|++-++..... .++...+++. +.+..+..+ +++|||||||+.+||+++
T Consensus 67 ~~~q~~~~~~~ltv~Dt~g~~~~~~~-------~e~~~~l~~~--l~~~~~~~~------~~~sgg~rqrv~~ara~~-- 129 (301)
T 2qnr_A 67 VEIEERGVKLRLTVVDTPGYGDAINC-------RDCFKTIISY--IDEQFERYL------HDESGLNRRHIIDNRVHC-- 129 (301)
T ss_dssp EEEC---CCEEEEEEEEC------------------CTTHHHH--HHHHHHHHH------HHHTSSCCTTCCCCCCCE--
T ss_pred EEecCCCcccCcchhhhhhhhhhcCc-------HHHHHHHHHH--HHHHHHHHH------HHhCHHhhhhhhhhhhhh--
Confidence 99998888888899988866432210 0001111111 123334433 489999999999998885
Q ss_pred CcEEEEeCCCCC-CCHHHHHHHHHHHHHHHHc-CCEEEEEEeCC
Q 004932 266 PHVLFIDEPLYH-LDSVSALLMMVTLKKLAST-GCTLLFTINQS 307 (723)
Q Consensus 266 P~lLlLDEPTsg-LD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~ 307 (723)
++++||||++ ||+... +.++++.++ +.++|++.|+.
T Consensus 130 --ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 130 --CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADT 167 (301)
T ss_dssp --EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGG
T ss_pred --eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCC
Confidence 9999999985 999873 666666643 66667666654
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-16 Score=160.49 Aligned_cols=169 Identities=11% Similarity=-0.012 Sum_probs=109.1
Q ss_pred cceeeceee-EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 004932 123 DKVVKSSNG-YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (723)
Q Consensus 123 ~~iL~~vs~-~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (723)
.+.|+++.+ .+++|++++|+||||||||||++.|++...+.+ |.|.+.+.+ .+..+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~---~~v~~~~~~--------------------~~~~~ 65 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDG---DPCIYVTTE--------------------ESRDS 65 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHT---CCEEEEESS--------------------SCHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCC---CeEEEEEcc--------------------cCHHH
Confidence 457888885 899999999999999999999999998765432 555553321 11121
Q ss_pred HHHHHHHhcCCCccchHH--HHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEeCCCCC
Q 004932 202 YLYYSALLQLPGFFCQRK--NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPH--VLFIDEPLYH 277 (723)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~--~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~--lLlLDEPTsg 277 (723)
.................. ..++.....++ ... .....|.+|.++...+.+...+|+ ++++||||++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 66 IIRQAKQFNWDFEEYIEKKLIIIDALMKEKE-----DQW-----SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp HHHHHHHTTCCCGGGBTTTEEEEECCC---------CTT-----BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred HHHHHHHhcchHHHHhhCCEEEEeccccccC-----cee-----eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 111111111100000000 00000000000 000 112459999999888888888999 9999999988
Q ss_pred C--CHHHHHHHHHHHHHHHH-cCCEEEEEEeCCh-------HHHHhcCCEEEEEeCC
Q 004932 278 L--DSVSALLMMVTLKKLAS-TGCTLLFTINQSS-------TEVFGLFDRICLLSNG 324 (723)
Q Consensus 278 L--D~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~-------~~i~~~~D~v~vL~~G 324 (723)
+ |+....++++.|+++++ .|.|||+++|... ..+.++||+|++|++.
T Consensus 136 ~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 136 FLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 8 99999999999999974 5899999888762 3478899999999754
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-17 Score=195.91 Aligned_cols=158 Identities=16% Similarity=0.092 Sum_probs=108.9
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 004932 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (723)
++.+++|+++. ++|++++|+||||||||||||+|+|+..... .| ..+......+++++| +++.+++.|
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q--~G------~~vpa~~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY--IG------SYVPAQKVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT--TT------CCBSSSEEEECCCCE---EEEEEC---
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh--cC------cccchhcccceeHHH---HHhhCCHHH
Confidence 45799999999 9999999999999999999999999742210 12 111111123444443 455556665
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 004932 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281 (723)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~ 281 (723)
++... ...+|+|++ +++.+..++.+|+++|||||++|+|+.
T Consensus 662 ~l~~~--------------------------------------~stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~ 702 (800)
T 1wb9_A 662 DLASG--------------------------------------RSTFMVEMT-ETANILHNATEYSLVLMDEIGRGTSTY 702 (800)
T ss_dssp ----------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSS
T ss_pred HHHhh--------------------------------------hhhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCChh
Confidence 55210 014566665 455555678999999999999999998
Q ss_pred HHHHH-HHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004932 282 SALLM-MVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 282 ~~~~i-~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
....+ ...++.+++ .|.++|+++|++ ++..++|++..+.+|++......
T Consensus 703 d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~~~~~~~~~ 753 (800)
T 1wb9_A 703 DGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANVHLDALEHG 753 (800)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEEEEEEEEET
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEEEEEEEEcC
Confidence 77775 788899987 499999999986 34578998877888888766543
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.64 E-value=5.1e-16 Score=162.84 Aligned_cols=149 Identities=14% Similarity=0.196 Sum_probs=103.8
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC
Q 004932 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLP 212 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~ 212 (723)
+.+|++++|+||||||||||++.|++.... |++. .|.+.. ....+.|+..++... .+.+.+. .+...
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~-----g~~~-~g~~~~-~~~~v~~~~~e~~~~---~~~~r~~---~~g~~ 93 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAG-----GPDL-LEVGEL-PTGPVIYLPAEDPPT---AIHHRLH---ALGAH 93 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHT-----CCCT-TCCCCC-CCCCEEEEESSSCHH---HHHHHHH---HHHTT
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHhc-----CCCc-CCCccC-CCccEEEEECCCCHH---HHHHHHH---HHHhh
Confidence 679999999999999999999999986543 5553 354321 124577877665320 1111111 11111
Q ss_pred CccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC--CCCHHH---HHHHH
Q 004932 213 GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY--HLDSVS---ALLMM 287 (723)
Q Consensus 213 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTs--gLD~~~---~~~i~ 287 (723)
......+++++.+++.+..++ .+..||+||+|++ ++++.+|+++++||||+ ++|... ..+++
T Consensus 94 ----~~~~~~~~~~~~l~l~~~~~~------~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~ 160 (279)
T 1nlf_A 94 ----LSAEERQAVADGLLIQPLIGS------LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVI 160 (279)
T ss_dssp ----SCHHHHHHHHHHEEECCCTTS------CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHH
T ss_pred ----cChhhhhhccCceEEeecCCC------CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHH
Confidence 012345677888887766544 3458999998875 68889999999999999 999754 48888
Q ss_pred HHHHHHH-HcCCEEEEEEeCC
Q 004932 288 VTLKKLA-STGCTLLFTINQS 307 (723)
Q Consensus 288 ~~L~~l~-~~g~tvi~t~h~~ 307 (723)
+.|++++ +.|+|||+++|..
T Consensus 161 ~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 161 GRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp HHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHcCCEEEEEecCC
Confidence 9999997 5699999987775
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-17 Score=180.62 Aligned_cols=167 Identities=16% Similarity=0.163 Sum_probs=99.5
Q ss_pred ceeece-eeEEeCCcEEEEECCCCCcHHHHHHHHHcCC--CCCC-CceeE-EEECCEeCCCCCceEEEEcCCCccCCCCC
Q 004932 124 KVVKSS-NGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSA-RMYGE-VFVNGAKSEMPYGSYGFVERETTLIGSLT 198 (723)
Q Consensus 124 ~iL~~v-s~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~--~~~~-~~~G~-I~i~G~~~~~~~~~~~yv~Q~~~l~~~lT 198 (723)
..|+.+ ++.+++|++++|+||||||||||++.|++.. +|+. ...|+ |+++++... ..+++++++|...+++. +
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-CHHHHHHHHHHcCCCHH-H
Confidence 346665 6899999999999999999999999999987 4321 01267 777775321 11223333333322211 2
Q ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHh-------hCCcEEEE
Q 004932 199 VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV-------MRPHVLFI 271 (723)
Q Consensus 199 V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~-------~~P~lLlL 271 (723)
+.||+.+ . . .--|++|+|++.++++++ .+|++|++
T Consensus 196 v~~ni~~----------------------------------~-~---~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIl 237 (349)
T 1pzn_A 196 VLKHIYV----------------------------------A-R---AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIV 237 (349)
T ss_dssp HGGGEEE----------------------------------E-E---CCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEE
T ss_pred HhhCEEE----------------------------------E-e---cCChHHHHHHHHHHHHHHHHhccccCCCCEEEE
Confidence 2222110 0 0 011467777888888877 68999999
Q ss_pred eCCCCCCCHHH------------HHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004932 272 DEPLYHLDSVS------------ALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 272 DEPTsgLD~~~------------~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
||||++||+.. ..++++.|+++++ .|+|||++.|... .....++.......|+++.++.
T Consensus 238 Ds~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 238 DSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp ETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred eCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecC
Confidence 99999999852 4567777777775 5899999888753 4444555666667777665543
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-18 Score=199.18 Aligned_cols=192 Identities=15% Similarity=0.098 Sum_probs=113.7
Q ss_pred eEEEEeEEEEEecccccccceeece----------eeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-CCCceeEEEEC
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSS----------NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH-SARMYGEVFVN 173 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~v----------s~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~-~~~~~G~I~i~ 173 (723)
.+.++||+..|..+ .+++|+.+ ++.++. +||+|||||||||||++|+|+..| + +|.|.++
T Consensus 10 ~i~~~~l~~~~~~~---~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~ 80 (608)
T 3szr_A 10 SVAENNLCSQYEEK---VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRC 80 (608)
T ss_dssp ----------CHHH---HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----------CCCS
T ss_pred hhhhhhhhHHHHHH---HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEc
Confidence 46788898888532 12233333 233333 999999999999999999999877 4 4999999
Q ss_pred CEeC--------CCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCC
Q 004932 174 GAKS--------EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245 (723)
Q Consensus 174 G~~~--------~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~ 245 (723)
|.++ ...++.++|++|+..+++.+||+|++.+........ .
T Consensus 81 g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~-------------------------------~ 129 (608)
T 3szr_A 81 PLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGE-------------------------------G 129 (608)
T ss_dssp CEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCS-------------------------------S
T ss_pred CEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCC-------------------------------c
Confidence 9763 122356899999999999999999997653211000 0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCC------CCCCCHHHHHHHHHHHHHHHHc--CCEEEEEEeCCh------HHH
Q 004932 246 KGLPCGERRRVRIARELVMRPHVLFIDEP------LYHLDSVSALLMMVTLKKLAST--GCTLLFTINQSS------TEV 311 (723)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~P~lLlLDEP------TsgLD~~~~~~i~~~L~~l~~~--g~tvi~t~h~~~------~~i 311 (723)
.++| ++++.++.+....|+++++||| |+|||+..+.++.++++++.++ +.++++++|... ..+
T Consensus 130 ~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~l 206 (608)
T 3szr_A 130 MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSM 206 (608)
T ss_dssp SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHH
T ss_pred cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHH
Confidence 0111 1112222233458999999999 9999999999999999997543 455566555532 111
Q ss_pred Hhc-----CCEEEEEeCCeEEEEeChhHHHHHh
Q 004932 312 FGL-----FDRICLLSNGNTLFFGETLACLQHF 339 (723)
Q Consensus 312 ~~~-----~D~v~vL~~G~iv~~G~~~~~~~~f 339 (723)
.+. ...|+|+.++.++..|+.+++.+.+
T Consensus 207 a~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l 239 (608)
T 3szr_A 207 AQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVV 239 (608)
T ss_dssp HHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC
T ss_pred HHHHhhcCCceEEEecchhhcCcccHHHHHHHH
Confidence 111 3568899999988888766554443
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-17 Score=164.49 Aligned_cols=155 Identities=21% Similarity=0.213 Sum_probs=101.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---CCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---MPYGSYGFVERETTLIGSLTVREYLYYSALLQLP 212 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~---~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~ 212 (723)
|++++|+||||||||||+++|+|+++ +. | |.++|.... ...+.++|++|+. ... ++++. .+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~---G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l~---~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SS---G-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPLS---RVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HT---T-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEEE---ECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cC---C-EEEcCEecchhHhhhceEEEEEEec--ccc---eehhh---cccc-
Confidence 78999999999999999999999987 54 8 888886532 2346789999874 111 11110 0000
Q ss_pred CccchHHHHHHHHHHHcCCchH-hhhhhcCCCCCCCCCHHHHHHH-HHHH---HHhhCCcEEEEeC--CCCCCCHHHHHH
Q 004932 213 GFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRV-RIAR---ELVMRPHVLFIDE--PLYHLDSVSALL 285 (723)
Q Consensus 213 ~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~~~~~~~LSGGerqRv-~IA~---aL~~~P~lLlLDE--PTsgLD~~~~~~ 285 (723)
+..+. .+..++ .+...+|+|||+++ ++++ |++.+|++||+|| |+..+|......
T Consensus 67 -----------------~~~~~~~~~~v~--~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 67 -----------------EPPPGKRECRVG--QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp -----------------CCCSSSCCEESS--SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred -----------------cCCccccccccc--eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 00000 001222 23457999999998 4454 5789999999999 899999875444
Q ss_pred HHHHHHHHHHcCCEEEE---EE-eCChHHHHhcCCEEEEEeCCeEEEEe
Q 004932 286 MMVTLKKLASTGCTLLF---TI-NQSSTEVFGLFDRICLLSNGNTLFFG 330 (723)
Q Consensus 286 i~~~L~~l~~~g~tvi~---t~-h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (723)
|+++.+...++|+ ++ |... ..+.|+|..+.+|+++...
T Consensus 128 ----l~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 128 ----VRQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp ----HHHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred ----HHHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 4444444555553 33 4432 3567788788888887654
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.7e-16 Score=169.67 Aligned_cols=127 Identities=21% Similarity=0.274 Sum_probs=87.4
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC-ceEEEEcCCCccCCCCCHHHHHHHHHHhc
Q 004932 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY-GSYGFVERETTLIGSLTVREYLYYSALLQ 210 (723)
Q Consensus 132 ~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~-~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~ 210 (723)
...+|++++|+|||||||||||++|+|++++.. .|.|...+.+.+... ...+++.|......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~--~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~--------------- 181 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTK--YHHILTIEDPIEFVHESKKCLVNQREVHRD--------------- 181 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHC--CCEEEEEESSCCSCCCCSSSEEEEEEBTTT---------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCC--CcEEEEccCcHHhhhhccccceeeeeeccc---------------
Confidence 667899999999999999999999999987642 266654433322111 11122322211100
Q ss_pred CCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 004932 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290 (723)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L 290 (723)
.++-.+ +||++|..+|++|++|||| |..+ .+.+
T Consensus 182 ------------------------------------~~~~~~----~La~aL~~~PdvillDEp~---d~e~----~~~~ 214 (356)
T 3jvv_A 182 ------------------------------------TLGFSE----ALRSALREDPDIILVGEMR---DLET----IRLA 214 (356)
T ss_dssp ------------------------------------BSCHHH----HHHHHTTSCCSEEEESCCC---SHHH----HHHH
T ss_pred ------------------------------------cCCHHH----HHHHHhhhCcCEEecCCCC---CHHH----HHHH
Confidence 122222 8999999999999999999 6555 4444
Q ss_pred HHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCC
Q 004932 291 KKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (723)
Q Consensus 291 ~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (723)
.+++++|.+|++|+|..+ .+ ..+||++.|..|
T Consensus 215 ~~~~~~G~~vl~t~H~~~-~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 215 LTAAETGHLVFGTLHTTS-AA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTCEEEEEESCSS-HH-HHHHHHHHTSCH
T ss_pred HHHHhcCCEEEEEEccCh-HH-HHHHHHhhhcCc
Confidence 555678999999999875 34 789999988654
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.9e-17 Score=161.95 Aligned_cols=174 Identities=11% Similarity=0.032 Sum_probs=97.7
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC-----CCCCCceeEEEECCEeCCCC
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-----PHSARMYGEVFVNGAKSEMP 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~-----~~~~~~~G~I~i~G~~~~~~ 180 (723)
++++|+++.|. ..++++ +.+.+|+.++|+|+||||||||++.|+|.. .++ .|.+.+.+.-. ..
T Consensus 4 l~~~~~~~~~~------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~---~G~~~~~~~~~-~~ 71 (210)
T 1pui_A 4 LNYQQTHFVMS------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKT---PGRTQLINLFE-VA 71 (210)
T ss_dssp -------CEEE------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEE-EE
T ss_pred hhhhhhhheee------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCC---CccceeeEEEE-ec
Confidence 68899999884 257777 888999999999999999999999999987 443 36554322100 00
Q ss_pred CceEEEEcCCCcc----CCCCC---HHHHHHHHHHh-cC----------CCccchHHHHHHHHHHHcCCchH-hhhhhcC
Q 004932 181 YGSYGFVERETTL----IGSLT---VREYLYYSALL-QL----------PGFFCQRKNVVEDAIHAMSLSDY-ANKLIGG 241 (723)
Q Consensus 181 ~~~~~yv~Q~~~l----~~~lT---V~E~l~~~~~~-~~----------~~~~~~~~~~v~~~l~~lgL~~~-~~~~ig~ 241 (723)
....++ +.+.+ .+.-. .+..+...... +. .......+..+.+.++..++... ..+++
T Consensus 72 -~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~-- 147 (210)
T 1pui_A 72 -DGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKA-- 147 (210)
T ss_dssp -TTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECG--
T ss_pred -CCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecc--
Confidence 001111 00000 00000 11122111110 00 00001123345556666666532 23323
Q ss_pred CCCCCCCCHHHHHH-HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 004932 242 HCYMKGLPCGERRR-VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCT 299 (723)
Q Consensus 242 ~~~~~~LSGGerqR-v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~t 299 (723)
..+|+||||| +..+++++.+|+++++|||||++|.....++++.|.++.++|.+
T Consensus 148 ----D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 148 ----DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp ----GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred ----cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 3799999999 89999999999999999999999999999999999998766644
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.6e-17 Score=177.61 Aligned_cols=163 Identities=16% Similarity=0.121 Sum_probs=96.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (723)
.+.++||++.|. ++.+++|+++.+ +|+|+||||||||+++|+|...+... .|.+.+++.+ ......+
T Consensus 11 ~l~~~~l~~~y~-----~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~-t~~~~~i 77 (418)
T 2qag_C 11 YVGFANLPNQVY-----RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK-TVQVEQS 77 (418)
T ss_dssp ----CCCCCCTT-----TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC------CCEEEEE
T ss_pred cEEEEecceeEC-----CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc-ceeeeeE
Confidence 478899988773 457999999997 99999999999999999998764321 1222222211 1112457
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 004932 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (723)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~ 264 (723)
++++|++.+++.+||.||+.+...... ......+.+ ..+. .++.+++||++|||+++.
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~~----~~~~~~i~~---------~i~~---------~~~~~l~qr~~IaRal~~ 135 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVDN----SNCWQPVID---------YIDS---------KFEDYLNAESRVNRRQMP 135 (418)
T ss_dssp ECC------CEEEEEEECC---------------CHHHHH---------HHHH---------HHHHHTTTSCC-CCCCCC
T ss_pred EEEEecCCcccceeeeechhhhhhccc----hhhHHHHHH---------HHHH---------HHHHHHHHHHHHHHHhcc
Confidence 899999888888999999866432110 000011111 1111 355677889999999999
Q ss_pred CCc---EEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCC
Q 004932 265 RPH---VLFIDEPL-YHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307 (723)
Q Consensus 265 ~P~---lLlLDEPT-sgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~ 307 (723)
+|+ +|++|||| .|||+... +.++.+.. +.++|+++|+-
T Consensus 136 d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 136 DNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp CC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEEST
T ss_pred CCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEcc
Confidence 999 99999999 69998873 44555544 67777777764
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=7.4e-15 Score=147.20 Aligned_cols=152 Identities=17% Similarity=0.117 Sum_probs=98.9
Q ss_pred ceeecee-eEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHH
Q 004932 124 KVVKSSN-GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (723)
Q Consensus 124 ~iL~~vs-~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (723)
+.|+++. +-+++|++++|+||||||||||++.|++ ..+. +.+.++. +..+ +.. .
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~---~v~~i~~---------------~~~~----~~~-~ 61 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGK---KVAYVDT---------------EGGF----SPE-R 61 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCS---EEEEEES---------------SCCC----CHH-H
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCC---cEEEEEC---------------CCCC----CHH-H
Confidence 4566666 4789999999999999999999999999 3221 2333322 2211 111 1
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHHcCCc--hHhhhhhcCCCCCCCCCHHH--HHHHHHHHHHhhC-CcEEEEeCCCCC
Q 004932 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCGE--RRRVRIARELVMR-PHVLFIDEPLYH 277 (723)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~ig~~~~~~~LSGGe--rqRv~IA~aL~~~-P~lLlLDEPTsg 277 (723)
+. +.++.+++. +..+.. .....++++ +++++.+++++.+ |+++++||||++
T Consensus 62 ~~-------------------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 62 LV-------------------QMAETRGLNPEEALSRF-----ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HH-------------------HHHHTTTCCHHHHHHHE-----EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HH-------------------HHHHhcCCChHHHhhcE-----EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 11 111111111 111111 112445553 6788888999986 999999999999
Q ss_pred CCHH--------HHHHHHHHHHHHHH-cCCEEEEEEeCCh------------HHHHhcCCEEEEEeCC
Q 004932 278 LDSV--------SALLMMVTLKKLAS-TGCTLLFTINQSS------------TEVFGLFDRICLLSNG 324 (723)
Q Consensus 278 LD~~--------~~~~i~~~L~~l~~-~g~tvi~t~h~~~------------~~i~~~~D~v~vL~~G 324 (723)
+|+. ...++++.|+++++ .|.|||+++|... ..+.+.||++++|++.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9973 33556777888875 4889998777653 1567899999999754
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-14 Score=141.29 Aligned_cols=79 Identities=16% Similarity=0.210 Sum_probs=67.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEE
Q 004932 244 YMKGLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319 (723)
Q Consensus 244 ~~~~LSGGerqRv~IA~aL~~----~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~ 319 (723)
.+..||||||||++||++|+. +|+++||||||+|||+.+...+.+.|+++.++ .++|+++|++ .+.+.||+++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~-~~~ivith~~--~~~~~ad~i~ 137 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE-SQFIVITLRD--VMMANADKII 137 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT-SEEEEECSCH--HHHTTCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC-CEEEEEEecH--HHHHhCCEEE
Confidence 456899999999999999985 46999999999999999999999999998754 5677767775 4678999999
Q ss_pred EEe--CCe
Q 004932 320 LLS--NGN 325 (723)
Q Consensus 320 vL~--~G~ 325 (723)
.+. +|.
T Consensus 138 ~v~~~~g~ 145 (173)
T 3kta_B 138 GVSMRDGV 145 (173)
T ss_dssp EEEEETTE
T ss_pred EEEecCCE
Confidence 664 664
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-18 Score=170.13 Aligned_cols=173 Identities=14% Similarity=0.087 Sum_probs=111.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCcc
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF 215 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~ 215 (723)
|++++|+||||||||||+++|++ +. .|.+.++|.+.... ...++++|.....+..|+.+++.+.+........
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~---~g~~~i~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 74 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QL---DNSAYIEGDIINHM-VVGGYRPPWESDELLALTWKNITDLTVNFLLAQN 74 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HS---SSEEEEEHHHHHTT-CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---cc---CCeEEEcccchhhh-hccccccCccchhHHHHHHHHHHHHHHHHHhcCC
Confidence 68999999999999999999998 22 38899988653211 1235566655444456788888664322100000
Q ss_pred chHHHHHHHHHHHcCCchHhhhhhcCCCCCCCC--CHHHHHHHHHHH------HHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 004932 216 CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL--PCGERRRVRIAR------ELVMRPHVLFIDEPLYHLDSVSALLMM 287 (723)
Q Consensus 216 ~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~L--SGGerqRv~IA~------aL~~~P~lLlLDEPTsgLD~~~~~~i~ 287 (723)
..+++.+...... +.+ +.+ |+|++|++.++. +|+.+|+...+|| +||+..... .
T Consensus 75 -------~~ild~~~~~~~~-~~~------~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~ 136 (189)
T 2bdt_A 75 -------DVVLDYIAFPDEA-EAL------AQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-V 136 (189)
T ss_dssp -------EEEEESCCCHHHH-HHH------HHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-H
T ss_pred -------cEEEeeccCHHHH-HHH------HHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-H
Confidence 0011111111111 111 134 888888988888 9999999888884 899988888 8
Q ss_pred HHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 288 VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 288 ~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
+.++.+.+.+.++|.++|...+++.++||+|+ ++|+++..|+++-+
T Consensus 137 ~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 137 EEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred HHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 88888876678899888872357888999998 99999999987643
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.49 E-value=8.6e-17 Score=158.24 Aligned_cols=148 Identities=14% Similarity=0.055 Sum_probs=94.4
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---CCCceEEEEcCCCccCCCCCHHHHHHHHHHh
Q 004932 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---MPYGSYGFVERETTLIGSLTVREYLYYSALL 209 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~---~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~ 209 (723)
+++|++++|+||||||||||+++|+|+ ++ .|.|.++|.+.. .....++|++|+.. +.+||.|++.+.+..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 568999999999999999999999998 33 399999986521 11123566766543 357889988765422
Q ss_pred cCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 004932 210 QLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT 289 (723)
Q Consensus 210 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~ 289 (723)
....... ..++.+++..++...... +..+..+|+|++||+.++|++..+|+++ +|+.....+.+.
T Consensus 79 ~~~~~~~---~~~~~~~~~~~l~~~~~~----~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 79 YAKEGYF---VILDGVVRPDWLPAFTAL----ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp HHHTSCE---EEECSCCCTTTTHHHHTT----CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred HhccCCe---EEEeccCcHHHHHHHHhc----CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 1000000 001111112233322210 1123479999999999999999999876 688888887777
Q ss_pred HHHHHHcCCEEEE
Q 004932 290 LKKLASTGCTLLF 302 (723)
Q Consensus 290 L~~l~~~g~tvi~ 302 (723)
++.+.+.+..+|.
T Consensus 144 ~~~l~~~~~~~i~ 156 (191)
T 1zp6_A 144 FADLGAFEHHVLP 156 (191)
T ss_dssp TTCCGGGGGGEEE
T ss_pred HhccCcccccEEE
Confidence 7666443333444
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.5e-14 Score=163.04 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=70.5
Q ss_pred CCCCC-CHHHHHHHHHHHHHhhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEE
Q 004932 244 YMKGL-PCGERRRVRIARELVMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICL 320 (723)
Q Consensus 244 ~~~~L-SGGerqRv~IA~aL~~~P--~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~v 320 (723)
.+..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |.|||+++|++. +...||++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEE
Confidence 34567 999999999999999999 99999999999999999999999999987 899999999863 4467999999
Q ss_pred EeCC
Q 004932 321 LSNG 324 (723)
Q Consensus 321 L~~G 324 (723)
|++|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9655
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=9.8e-16 Score=155.45 Aligned_cols=147 Identities=14% Similarity=0.143 Sum_probs=98.1
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-CceEEEEcCCCccCCCCCH----HHHHHHH
Q 004932 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YGSYGFVERETTLIGSLTV----REYLYYS 206 (723)
Q Consensus 132 ~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~-~~~~~yv~Q~~~l~~~lTV----~E~l~~~ 206 (723)
..++|++++|+||||||||||+++|+|+.+|+ ...|.|.+.+.+.... ...++|++|+...++.+++ .|++.+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 45689999999999999999999999998863 2569999988654322 2457888887665544433 2221110
Q ss_pred HHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 004932 207 ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 286 (723)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i 286 (723)
+ + ..+.| +++ +.+++..++++||| ||+.++.++
T Consensus 91 ---------------------------------~-~--~yg~~---~~~---v~~~l~~G~illLD-----LD~~~~~~i 123 (219)
T 1s96_A 91 ---------------------------------G-N--YYGTS---REA---IEQVLATGVDVFLD-----IDWQGAQQI 123 (219)
T ss_dssp ---------------------------------T-E--EEEEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHHH
T ss_pred ---------------------------------h-c--cCCCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHHH
Confidence 0 0 00111 111 34455568999999 999999999
Q ss_pred HHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHhh
Q 004932 287 MVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFS 340 (723)
Q Consensus 287 ~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~ 340 (723)
.+.+. ++.||++++|++. ++.+ |+ +.+| .++++++...+.
T Consensus 124 ~~~l~----~~~tI~i~th~~~-~l~~---Rl--~~rG----~~~~e~i~~rl~ 163 (219)
T 1s96_A 124 RQKMP----HARSIFILPPSKI-ELDR---RL--RGRG----QDSEEVIAKRMA 163 (219)
T ss_dssp HHHCT----TCEEEEEECSSHH-HHHH---HH--HTTS----CSCHHHHHHHHH
T ss_pred HHHcc----CCEEEEEECCCHH-HHHH---HH--HHcC----CCCHHHHHHHHH
Confidence 99876 5889999888764 4443 42 6677 567777665543
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-14 Score=155.22 Aligned_cols=136 Identities=15% Similarity=0.104 Sum_probs=98.5
Q ss_pred eeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CC--CCceEEEEc-CCCccCCCCCHH
Q 004932 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EM--PYGSYGFVE-RETTLIGSLTVR 200 (723)
Q Consensus 125 iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~-~~--~~~~~~yv~-Q~~~l~~~lTV~ 200 (723)
+++++|+.+++|++++|+||||||||||+++|+|+++++. |.|.++|... .. ..+.+++++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~---g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQ---RLITIEDVPELFLPDHPNHVHLFYPSEAKE------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTS---CEEEEESSSCCCCTTCSSEEEEECC------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCc---eEEEECCccccCccccCCEEEEeecCcccc-------
Confidence 3499999999999999999999999999999999999864 9999998531 11 234577777 54321
Q ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 004932 201 EYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280 (723)
Q Consensus 201 E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~ 280 (723)
+++++..+|..|+.++..+|+.+++||++.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012222355566667777899999999986
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 004932 281 VSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (723)
Q Consensus 281 ~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (723)
.++.+.|+.+.....|++.++|..+ ....+||+..|..|.
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 3456677777655567888889864 567789988887663
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=6.7e-17 Score=176.31 Aligned_cols=169 Identities=14% Similarity=0.056 Sum_probs=99.8
Q ss_pred eeeceeeEEeC--CcEEEEECCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 004932 125 VVKSSNGYALP--GTMTVIMGPAKSGKSTLLRAIAGRLPHSA-RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (723)
Q Consensus 125 iL~~vs~~v~~--Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~-~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (723)
+.+.|++.+.+ |+.++|+||||||||||+++|+|+++++. ...|+|.+++... ..+..++.... +
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~-----------~~~~~~~~~~~-~ 224 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLG-----------GDEQAMQYSDY-P 224 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSS-----------SCTTSSCTTTH-H
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcC-----------CCcccCChhHH-H
Confidence 46789999999 99999999999999999999999988741 0015555432100 00001111122 3
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHcC--CchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHh-hCCcEEEEeC---CC
Q 004932 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMS--LSDYANKLIGGHCYMKGLPCGERRRVRIARELV-MRPHVLFIDE---PL 275 (723)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lg--L~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~-~~P~lLlLDE---PT 275 (723)
++.+.... .......+.+.+- ..+..++.+ ..+|+|++||..+++++. .+|+++|||| |+
T Consensus 225 ~I~~~~q~--------~~~~~~t~~~nl~~~~~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~ 290 (365)
T 1lw7_A 225 QMALGHQR--------YIDYAVRHSHKIAFIDTDFITTQA------FCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEW 290 (365)
T ss_dssp HHHHHHHH--------HHHHHHHHCSSEEEESSCHHHHHH------HHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-
T ss_pred HHHHHHHH--------HHHHHHhccCCEEEEeCCchHHHH------HHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCc
Confidence 34332100 0000000011110 111222222 256778888888888875 5999999999 65
Q ss_pred ------CCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEE
Q 004932 276 ------YHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLL 321 (723)
Q Consensus 276 ------sgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (723)
.++|+..+..+.+.|+++.+ .|.+++++.| +. +..+++|++.++
T Consensus 291 ~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde-~~-~~~r~~~~i~~i 341 (365)
T 1lw7_A 291 VDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIES-PS-YLDRYNQVKAVI 341 (365)
T ss_dssp ----------CCSHHHHHHHHHHHHHGGGCCCEEEEC-SS-HHHHHHHHHHHH
T ss_pred ccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCC-CC-HHHHHHHHHHHH
Confidence 58999999999999999864 4788888664 43 455666665544
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-16 Score=163.83 Aligned_cols=146 Identities=21% Similarity=0.235 Sum_probs=99.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHH---cCCCCCCCceeEEEECCEeCCCC-CceEEEEcCCCccCCCCCHHHHHHHHHHhc
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIA---GRLPHSARMYGEVFVNGAKSEMP-YGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~---G~~~~~~~~~G~I~i~G~~~~~~-~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~ 210 (723)
++++++|+||||||||||+++|+ |+..++ .|+|.++|.+.... ...+.+++|+..+++..++.|++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 998775 48888776542111 112344567777788889999997643210
Q ss_pred ------CCCccchHHHHHHHHHH--HcC------------CchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH-hhCCcEE
Q 004932 211 ------LPGFFCQRKNVVEDAIH--AMS------------LSDYANKLIGGHCYMKGLPCGERRRVRIAREL-VMRPHVL 269 (723)
Q Consensus 211 ------~~~~~~~~~~~v~~~l~--~lg------------L~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL-~~~P~lL 269 (723)
..+. ......++.+.+ .++ +....++ .+..||| |+ ++| +.+|+++
T Consensus 103 ~~~~~il~g~-~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r------~~~~lSg----rv---~al~~~~P~~l 168 (246)
T 2bbw_A 103 RGQHWLLDGF-PRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRR------WIHPPSG----RV---YNLDFNPPHVH 168 (246)
T ss_dssp TTSCEEEESC-CCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTE------EEETTTT----EE---EETTTSCCSST
T ss_pred CCCeEEEECC-CCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcC------CCcCCCC----Cc---cccccCCCccc
Confidence 0010 111122233221 122 2222333 3458999 66 778 9999999
Q ss_pred EEe----CCCCCCCHHHHHHHHHHHHHHHHcC
Q 004932 270 FID----EPLYHLDSVSALLMMVTLKKLASTG 297 (723)
Q Consensus 270 lLD----EPTsgLD~~~~~~i~~~L~~l~~~g 297 (723)
+|| |||+|||..+...+.+.|+++.+++
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 999 9999999999999999999987654
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.6e-12 Score=130.53 Aligned_cols=152 Identities=18% Similarity=0.252 Sum_probs=87.1
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHc--CCCCCC--CceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHH
Q 004932 131 GYALPGTMTVIMGPAKSGKSTLLRAIAG--RLPHSA--RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYS 206 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL~~L~G--~~~~~~--~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~ 206 (723)
+-+++|++++|+||||||||||++.|++ ..++.. ...|.+.+++.. .+ ...+...
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~---------------~~----~~~~~~~-- 77 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG---------------TF----RPERLLA-- 77 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CC----CHHHHHH--
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC---------------Cc----CHHHHHH--
Confidence 5688999999999999999999999999 454410 012566665532 10 1111111
Q ss_pred HHhcCCCccchHHHHHHHHHHHcCCc--hHhhhhhcCCCCCCCCCHHHHHH-HHHHHHHh--hCCcEEEEeCCCCCCCHH
Q 004932 207 ALLQLPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCGERRR-VRIARELV--MRPHVLFIDEPLYHLDSV 281 (723)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~ig~~~~~~~LSGGerqR-v~IA~aL~--~~P~lLlLDEPTsgLD~~ 281 (723)
.++.+++. +..+... .....++.+... +.-+.+++ .+|+++++|||++.+|+.
T Consensus 78 ------------------~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~ 135 (243)
T 1n0w_A 78 ------------------VAERYGLSGSDVLDNVA----YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTD 135 (243)
T ss_dssp ------------------HHHHTTCCHHHHHHTEE----EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC--
T ss_pred ------------------HHHHcCCCHHHHhhCeE----EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHH
Confidence 11111111 0111110 112455555433 33334444 489999999999999975
Q ss_pred -------H-----HHHHHHHHHHHHH-cCCEEEEEEeCChHH------------------HHhcCCEEEEEeCCe
Q 004932 282 -------S-----ALLMMVTLKKLAS-TGCTLLFTINQSSTE------------------VFGLFDRICLLSNGN 325 (723)
Q Consensus 282 -------~-----~~~i~~~L~~l~~-~g~tvi~t~h~~~~~------------------i~~~~D~v~vL~~G~ 325 (723)
. ...+++.|+++++ .|.|||+++|..... +.++||.+++|++|+
T Consensus 136 ~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~ 210 (243)
T 1n0w_A 136 YSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR 210 (243)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEECS
T ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEcC
Confidence 3 3456666777764 589999977753211 223899999998653
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=3.5e-14 Score=155.24 Aligned_cols=131 Identities=18% Similarity=0.206 Sum_probs=93.4
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-CceEEEEcCCCccCCCCCHHHH
Q 004932 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YGSYGFVERETTLIGSLTVREY 202 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~-~~~~~yv~Q~~~l~~~lTV~E~ 202 (723)
.+|++++ +++|++++|+||||||||||+++|+|++++.. +|+|.+.|.+.... ...+++++|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~--~g~I~~~e~~~e~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTK--SYHIITIEDPIEYVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHS--CCEEEEEESSCCSCCCCSSSEEEEEE-----------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCC--CcEEEEecccHhhhhccCceEEEeee-----------
Confidence 3566665 78999999999999999999999999987641 39997766554321 23355665531
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 004932 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282 (723)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~ 282 (723)
+|+. +..+ +.+|+++|..+|++|++|||+ |..+
T Consensus 191 --------------------------~g~~------------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 --------------------------VGED------------TKSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp --------------------------BTTT------------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred --------------------------cCCC------------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 1111 1134 468999999999999999999 7766
Q ss_pred HHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEe
Q 004932 283 ALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (723)
Q Consensus 283 ~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (723)
... .++. +..|.+++.|+|... +.+.+||++.|.
T Consensus 224 ~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 224 VET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 443 3433 356889988888753 677788887664
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-16 Score=168.93 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=97.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC--------CCCCCceeEEEECCEeCCCCC--------------------ceEEEE-
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGRL--------PHSARMYGEVFVNGAKSEMPY--------------------GSYGFV- 187 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~--------~~~~~~~G~I~i~G~~~~~~~--------------------~~~~yv- 187 (723)
++++|+|+||||||||+|.|+|.. .++ .|+|.++|.++.... +.++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 589999999999999999999986 444 499999997653211 113334
Q ss_pred --cCCCccCCCCCHHHHHHHH--HHh--cC-CCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHH
Q 004932 188 --ERETTLIGSLTVREYLYYS--ALL--QL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (723)
Q Consensus 188 --~Q~~~l~~~lTV~E~l~~~--~~~--~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (723)
+|+..+++..+|.|+..++ ..+ .. .........+++.++..+++.+..++.. ++|+||+||+..++
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-------~ls~g~~Q~~~ad~ 154 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-------QFTIAQSQVGYADR 154 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-------HCHHHHHHHHTCSE
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-------hchHHHHHHHhCCE
Confidence 3444444455555544221 000 00 0000000001112233445555555432 69999999999999
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCC
Q 004932 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 316 (723)
Q Consensus 261 aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D 316 (723)
+++.+|+++ ||| ..+.+.|+++. .+.+|++++|.+. ++..++|
T Consensus 155 ill~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 155 ILLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp EEEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC-CGGGGSC
T ss_pred EEEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC-CHHHHhC
Confidence 999999987 998 77888888875 5789999888764 3434443
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.3e-15 Score=162.66 Aligned_cols=184 Identities=14% Similarity=0.092 Sum_probs=113.6
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcE--EEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTM--TVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~--~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (723)
+++++ ++.|. +.+ |++||+.+++|++ +||+||||||||||+|+|+|+.- .|...- ........+.
T Consensus 17 l~~~~-~~~y~-----~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~-~~~~~~~~~~ 83 (427)
T 2qag_B 17 VPLAG-HVGFD-----SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPAT-HTQPGVQLQS 83 (427)
T ss_dssp CCCCC-CC-CC-------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------------CCSSCEEEE
T ss_pred EEEee-EEEEC-----Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCC-CCCccceEee
Confidence 44555 55552 234 9999999999999 99999999999999999999842 132111 1011111246
Q ss_pred EEEEcCCCccCCCCCHHHHHHHHHHhcCCCccch----HHHHHHHHHHHc-CCch----Hhhhhhc-----CCCCCCCCC
Q 004932 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ----RKNVVEDAIHAM-SLSD----YANKLIG-----GHCYMKGLP 249 (723)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~----~~~~v~~~l~~l-gL~~----~~~~~ig-----~~~~~~~LS 249 (723)
++|++|++.+++.+||.||+.++........... .+...++.++.. ++.. ..|..+. -.+..++|+
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~ 163 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK 163 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C
T ss_pred EEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC
Confidence 8999999988888999998855321100000000 123444555554 4331 1121110 001124677
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCCEEEEEEe
Q 004932 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK-LASTGCTLLFTIN 305 (723)
Q Consensus 250 GGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~-l~~~g~tvi~t~h 305 (723)
-.+ +.|+++|..+++++++|||+..|.+.....+.+.+++ +...|..|+.++.
T Consensus 164 ~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 164 SLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred HHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 776 7899999999999999999999999999999999986 8788888887654
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.7e-14 Score=159.59 Aligned_cols=153 Identities=12% Similarity=0.121 Sum_probs=104.6
Q ss_pred eeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----------CCceEEEEcCCCccC
Q 004932 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----------PYGSYGFVERETTLI 194 (723)
Q Consensus 126 L~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~-----------~~~~~~yv~Q~~~l~ 194 (723)
-+++|+.+++|++++|+|+||||||||+++|+|++++.+ |+|.++|.+... .++.++|++|+..++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~---G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQG---KSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcC---CeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 368999999999999999999999999999999988764 999998765321 123589999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHh-hCC-cEEEEe
Q 004932 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV-MRP-HVLFID 272 (723)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~-~~P-~lLlLD 272 (723)
+.+||++++.++...... .-+++..|+.+....+. .+| +|++.+++++. ..| .+||..
T Consensus 360 p~~tV~e~l~~a~~~~~D----------vVLIDTaGrl~~~~~lm------~EL----~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 360 SASVIFDAIQAAKARNID----------VLIADTAGRLQNKSHLM------EEL----KKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHHTTCS----------EEEECCCCSCCCHHHHH------HHH----HHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCC----------EEEEeCCCccchhhhHH------HHH----HHHHHHHHHhccCCCCeeEEEe
Confidence 889999999876432110 00123333322222111 123 47888888764 457 466665
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCC
Q 004932 273 EPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQS 307 (723)
Q Consensus 273 EPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~ 307 (723)
++|+|.|.. +.++.+.+ -|.|.++.+|-+
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTKLD 449 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTKLD 449 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEECGG
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEcCC
Confidence 688886554 34555553 477888877854
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.36 E-value=9.4e-14 Score=149.12 Aligned_cols=160 Identities=11% Similarity=0.047 Sum_probs=106.9
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------C--ceEEEEcCCCccCCCCCHHHH
Q 004932 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---------Y--GSYGFVERETTLIGSLTVREY 202 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---------~--~~~~yv~Q~~~l~~~lTV~E~ 202 (723)
++|++++|+||||||||||+++|+|++++.+ |+|.+.|.+.... . ..+.+++|+..+.|.+||+|+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~---g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHG---FSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC---CEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 5899999999999999999999999998865 9999999875321 1 135699999999999999999
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 004932 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282 (723)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~ 282 (723)
+.++....... -+++..|+.+..+..+ .+|| .|++++..++.+++||.+|.
T Consensus 204 l~~~~~~~~d~----------vliDtaG~~~~~~~l~------~eL~-------~i~ral~~de~llvLDa~t~------ 254 (328)
T 3e70_C 204 IQHAKARGIDV----------VLIDTAGRSETNRNLM------DEMK-------KIARVTKPNLVIFVGDALAG------ 254 (328)
T ss_dssp HHHHHHHTCSE----------EEEEECCSCCTTTCHH------HHHH-------HHHHHHCCSEEEEEEEGGGT------
T ss_pred HHHHHhccchh----------hHHhhccchhHHHHHH------HHHH-------HHHHHhcCCCCEEEEecHHH------
Confidence 97753211100 0122233332222221 1343 38899988888888885543
Q ss_pred HHHHHHHHHHHH-HcCCEEEEEEeCChH--------HHHhcCCEEEEEeCCeE
Q 004932 283 ALLMMVTLKKLA-STGCTLLFTINQSST--------EVFGLFDRICLLSNGNT 326 (723)
Q Consensus 283 ~~~i~~~L~~l~-~~g~tvi~t~h~~~~--------~i~~~~D~v~vL~~G~i 326 (723)
.++++.++.+. +.+.|+|+++|.+.. .+....-.|..+..|+-
T Consensus 255 -~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 255 -NAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG 306 (328)
T ss_dssp -THHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred -HHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence 45666677776 458888888887631 12233345555555543
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-13 Score=147.88 Aligned_cols=120 Identities=20% Similarity=0.145 Sum_probs=83.7
Q ss_pred eeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-CCCCceeEEEEC-CEeCC-CCCceEEEEcCCCccCCCCCHHH
Q 004932 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEVFVN-GAKSE-MPYGSYGFVERETTLIGSLTVRE 201 (723)
Q Consensus 125 iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~-~~~~~~G~I~i~-G~~~~-~~~~~~~yv~Q~~~l~~~lTV~E 201 (723)
-+++++.. .+|++++|+||||||||||+|+|+|..+ +.. |+|.++ |+... .....+++++|+..++++.||+|
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~---G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILT---NDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCC---C-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccccc---CCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 35566654 4799999999999999999999999988 764 999987 65432 22356899999998999989988
Q ss_pred HHHHHHHhcCCC-ccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004932 202 YLYYSALLQLPG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 202 ~l~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
+. +.. ...+..+.+.++++.+|+.+..+. .+.++| ||+||++||+++
T Consensus 281 ~~-------l~~l~~~e~~~~~~e~l~~~gl~~f~~~------~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 281 FG-------LWHLEPEQITQGFVEFHDYLGHCKYRDC------KHDADP-GCAIREAVENGA 328 (358)
T ss_dssp CC-------CCCCCHHHHHHTSGGGGGGTTCSSSTTC------CSSSCT-TCHHHHHHHHTS
T ss_pred hh-------hcCCCHHHHHHHHHHHHHHcCCchhcCC------CcccCC-HHHHHHHHHhcC
Confidence 41 111 111234557788888898877765 445899 999999999864
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-14 Score=137.92 Aligned_cols=79 Identities=19% Similarity=0.091 Sum_probs=64.5
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 004932 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (723)
.+.+++++|+.+++|++++|+||||||||||+|+|+|++ |.. |+|.++|.++...+....+++|+..++ .+||.|
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~---G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQ---GNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCC---SCCCCCTTTCEEEEEETTEEEEEEECT-TCSCTT
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCC---CeEEECCEeeeeeccCCCcceeccccc-cCCcHH
Confidence 346899999999999999999999999999999999998 654 999999965421111112788988888 899999
Q ss_pred HHHH
Q 004932 202 YLYY 205 (723)
Q Consensus 202 ~l~~ 205 (723)
++.+
T Consensus 94 ~l~~ 97 (158)
T 1htw_A 94 ELEF 97 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9854
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.5e-12 Score=140.48 Aligned_cols=78 Identities=23% Similarity=0.303 Sum_probs=67.7
Q ss_pred CCCCCCHHHHHHH------HHHHHHhhC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCC
Q 004932 244 YMKGLPCGERRRV------RIARELVMR-PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 316 (723)
Q Consensus 244 ~~~~LSGGerqRv------~IA~aL~~~-P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D 316 (723)
.+..||||||||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++.+ +.+||+++|++ ++..+||
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~--~~~~~~d 353 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHR--ELEDVAD 353 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCG--GGGGGCS
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChH--HHHhhCC
Confidence 3468999999988 567899999 999999999999999999999999999753 46889989986 3678999
Q ss_pred EEEEEe-CC
Q 004932 317 RICLLS-NG 324 (723)
Q Consensus 317 ~v~vL~-~G 324 (723)
++++|+ +|
T Consensus 354 ~~~~l~k~~ 362 (371)
T 3auy_A 354 VIINVKKDG 362 (371)
T ss_dssp EEEEEEESS
T ss_pred EEEEEEecC
Confidence 999997 44
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-14 Score=142.08 Aligned_cols=138 Identities=15% Similarity=0.120 Sum_probs=85.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-CC-------C-ceEE----EEcCCCccCCCCCHHHHH
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-MP-------Y-GSYG----FVERETTLIGSLTVREYL 203 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~-~~-------~-~~~~----yv~Q~~~l~~~lTV~E~l 203 (723)
++++|+|+||||||||+++|+|++++.+...|.|.++|.++. .. + +.++ ++.|+..++ ++|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 589999999999999999999998875333599999997621 11 1 2345 778876654 110
Q ss_pred HHHHHhcCCCccchHHHHHHHHHHH-cCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEE-------EEeCCC
Q 004932 204 YYSALLQLPGFFCQRKNVVEDAIHA-MSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVL-------FIDEPL 275 (723)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lL-------lLDEPT 275 (723)
. . .+....+++.++. +. -.|+.++ .+||||||||++|||+++.+|++. .-|.|.
T Consensus 77 --------~-~-~~~~a~l~~~i~~~l~---g~dt~i~-----EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~ 138 (171)
T 2f1r_A 77 --------V-S-EEEGNDLDWIYERYLS---DYDLVIT-----EGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERV 138 (171)
T ss_dssp --------C-C-HHHHTCHHHHHHHHTT---TCSEEEE-----ESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCC
T ss_pred --------C-C-hhhhhCHHHHHHhhCC---CCCEEEE-----CCcCCCCCcEEEEEecccCCCccCccceEEEEecCCc
Confidence 0 0 0001124445554 42 2455554 269999999999999999999873 235553
Q ss_pred CC---CCHHHHHHHHHHHHHHHHcCC
Q 004932 276 YH---LDSVSALLMMVTLKKLASTGC 298 (723)
Q Consensus 276 sg---LD~~~~~~i~~~L~~l~~~g~ 298 (723)
.+ +|......+.+.+.+...+|.
T Consensus 139 ~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 139 DGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp SSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred ccCcccCcccHHHHHHHHHHHHhccC
Confidence 22 344556778888877666664
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3e-13 Score=131.95 Aligned_cols=47 Identities=19% Similarity=0.121 Sum_probs=42.4
Q ss_pred hhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChH
Q 004932 263 VMRPHVLFIDEPLY-HLDSVSALLMMVTLKKLASTGCTLLFTINQSST 309 (723)
Q Consensus 263 ~~~P~lLlLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~ 309 (723)
+.+|++|+||||++ ++|+..+..+.+++....++|+++|+++|++..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 45999999999995 999999999999999988889999999998854
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.1e-14 Score=158.85 Aligned_cols=161 Identities=16% Similarity=0.121 Sum_probs=94.8
Q ss_pred eeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCC----------ccCC
Q 004932 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERET----------TLIG 195 (723)
Q Consensus 126 L~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~----------~l~~ 195 (723)
-+++++.++.|+.++|+|+|||||||||++|+|..+. +.+.+.......++++.+++ .+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~---------i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPK---------IAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 217 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCE---------ECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCcc---------ccCcccceecceeeEEEecCcceEEEEecccccc
Confidence 4789999999999999999999999999999998431 12222111112234444332 2211
Q ss_pred CCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 004932 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPL 275 (723)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPT 275 (723)
. ..++. .+.....+..++++.++..+++. +. ...+||+||+||+.+|++|+.+|.+|++
T Consensus 218 ~--a~~~~------~L~~~fl~~~era~~lL~vvDls---~~------~~~~ls~g~~el~~la~aL~~~P~ILVl---- 276 (416)
T 1udx_A 218 G--ASEGK------GLGLEFLRHIARTRVLLYVLDAA---DE------PLKTLETLRKEVGAYDPALLRRPSLVAL---- 276 (416)
T ss_dssp C--GGGSC------CSCHHHHHHHTSSSEEEEEEETT---SC------HHHHHHHHHHHHHHHCHHHHHSCEEEEE----
T ss_pred c--hhhhh------hhhHHHHHHHHHHHhhhEEeCCc---cC------CHHHHHHHHHHHHHHhHHhhcCCEEEEE----
Confidence 1 00000 00000000000111222222332 22 2347999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHH-HHcCCEEEEEEeCChHHHHhcCCE
Q 004932 276 YHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTEVFGLFDR 317 (723)
Q Consensus 276 sgLD~~~~~~i~~~L~~l-~~~g~tvi~t~h~~~~~i~~~~D~ 317 (723)
+++|...+ ..++.+++. .+.|.+++.++.+....+.++++.
T Consensus 277 NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 277 NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 99998877 444555444 455777777665544445555444
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.2e-12 Score=122.73 Aligned_cols=95 Identities=19% Similarity=0.362 Sum_probs=70.8
Q ss_pred eeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCEeCCCCCceEEEEcCCCccCCCCCHHHH
Q 004932 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG--EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (723)
Q Consensus 125 iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G--~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (723)
+|+++ +|+.++|+||||+|||||+++|+|...+. | .+.+++. +... .
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~----g~~~~~~~~~---------------~~~~-~------ 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALEA----GKNAAYIDAA---------------SMPL-T------ 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHTT----TCCEEEEETT---------------TSCC-C------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHhc----CCcEEEEcHH---------------HhhH-H------
Confidence 45555 89999999999999999999999987653 4 3443332 1100 0
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 004932 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282 (723)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~ 282 (723)
+++.+|++|++|||++ +|...
T Consensus 79 ----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~ 99 (149)
T 2kjq_A 79 ----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEE 99 (149)
T ss_dssp ----------------------------------------------------------GGGGGCSEEEEESTTC-CCSHH
T ss_pred ----------------------------------------------------------HHHhCCCEEEEeCccc-cChHH
Confidence 1245799999999998 66555
Q ss_pred HHHHHHHHHHHHHcCCE-EEEEEeCChH
Q 004932 283 ALLMMVTLKKLASTGCT-LLFTINQSST 309 (723)
Q Consensus 283 ~~~i~~~L~~l~~~g~t-vi~t~h~~~~ 309 (723)
+..+.+++.++.++|++ +|+++|.+..
T Consensus 100 ~~~l~~li~~~~~~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 100 QALLFSIFNRFRNSGKGFLLLGSEYTPQ 127 (149)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESSCTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence 88999999999888887 8887776543
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.28 E-value=5.8e-12 Score=140.19 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=67.8
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE
Q 004932 246 KGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (723)
Q Consensus 246 ~~LSGGerqRv~IA~aL~----~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (723)
..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.+++.++|+++|++ .....||++++|
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 359999999999999999 57999999999999999999999999999876688999988884 567889999999
Q ss_pred e
Q 004932 322 S 322 (723)
Q Consensus 322 ~ 322 (723)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.5e-13 Score=142.34 Aligned_cols=117 Identities=19% Similarity=0.233 Sum_probs=81.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCCC-----ceEEEEcCCCccC-----CCCCHH
Q 004932 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV---NGAKSEMPY-----GSYGFVERETTLI-----GSLTVR 200 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i---~G~~~~~~~-----~~~~yv~Q~~~l~-----~~lTV~ 200 (723)
.+|++++|+||||||||||+|+|+ +.++.. |+|.+ +|+...... +.+||++|.+.+. +.+|+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~---G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELRT---QEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCCC---SCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCcc---cccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 479999999999999999999999 888764 99999 887643211 2479999998553 68899
Q ss_pred HHH--HHH----HHhcCCC--ccchHHHHHHHHHHHcCCch-HhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 201 EYL--YYS----ALLQLPG--FFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 201 E~l--~~~----~~~~~~~--~~~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
|++ .|+ ..++... ...+...+++++++.++|.+ ..++.+ +.|||.++|++.|||+
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~------~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL------KIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH------HHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH------HHHHHHHHHHHHHhcc
Confidence 887 443 1111111 11123457899999999986 666655 4899999999999874
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-13 Score=145.89 Aligned_cols=129 Identities=17% Similarity=0.154 Sum_probs=87.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHH----hc
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSAL----LQ 210 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~----~~ 210 (723)
++.+++|.|+||||||||++.|++++.+. | . ..+.+.+|.|++.+++. ++++++.+... +.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~----g------~----~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~ 94 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK----Y------G----GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQ 94 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH----H------G----GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc----C------C----CCceEEEeccccccCCh-HHHHHHhccccccchhh
Confidence 68899999999999999999999988652 2 0 12345566999988864 88888876521 11
Q ss_pred ---CCCccchHHHHHHHHHHHcCCc--hHhhhhhcCCCCCCCCCHHHHHHHHHH--HHHhhCCcEEEEeCCCCCCCHHH
Q 004932 211 ---LPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCGERRRVRIA--RELVMRPHVLFIDEPLYHLDSVS 282 (723)
Q Consensus 211 ---~~~~~~~~~~~v~~~l~~lgL~--~~~~~~ig~~~~~~~LSGGerqRv~IA--~aL~~~P~lLlLDEPTsgLD~~~ 282 (723)
.|.. ...+...+.++.+... ......+.-..+.+.+||||+||+++| +++ +|+|||+||||++||+..
T Consensus 95 ~~g~p~a--~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 95 GRGLPGT--HDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSCSTTS--BCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hccCcch--hHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 1211 1344556666666432 000000000234578999999999997 555 999999999999999853
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-14 Score=154.20 Aligned_cols=174 Identities=12% Similarity=0.043 Sum_probs=111.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (723)
++.+++++.+. .+.+|+++|+.+.+|++++|+||||||||||+++|+|++++.+ |+|.+.|.+...
T Consensus 30 ie~~~~~~~~~-----~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~---g~v~i~~~d~~~~~~~~~ 101 (337)
T 2qm8_A 30 AESRRADHRAA-----VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAG---HKVAVLAVDPSSTRTGGS 101 (337)
T ss_dssp HTCSSHHHHHH-----HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEEECGGGGSSCCC
T ss_pred HeeCCcccccC-----hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCC---CEEEEEEEcCcccccccc
Confidence 45566665542 3469999999999999999999999999999999999988764 999999876421
Q ss_pred ---CCceEEEEcCCCccCCCC------------CHHHHHHHHHHhcC-------CCcc-------------------chH
Q 004932 180 ---PYGSYGFVERETTLIGSL------------TVREYLYYSALLQL-------PGFF-------------------CQR 218 (723)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~l------------TV~E~l~~~~~~~~-------~~~~-------------------~~~ 218 (723)
.+..+++++|++.+++.. +++|.+........ ++.. ...
T Consensus 102 ~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~ 181 (337)
T 2qm8_A 102 ILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAG 181 (337)
T ss_dssp SSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC-
T ss_pred hHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCc
Confidence 124578999988776532 22333211000000 0000 000
Q ss_pred HH--HHH-HHHHHcCCchHhhhhhcCC-CCCCCCCHHHHHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHH
Q 004932 219 KN--VVE-DAIHAMSLSDYANKLIGGH-CYMKGLPCGERRRVRIARELVM------RPHVLFIDEPLYHLDSVSALLMMV 288 (723)
Q Consensus 219 ~~--~v~-~~l~~lgL~~~~~~~ig~~-~~~~~LSGGerqRv~IA~aL~~------~P~lLlLDEPTsgLD~~~~~~i~~ 288 (723)
++ .+. .+.+...+- ..++ . + .....+|+|++|++..+++++. +|++++ ||++|......+++
T Consensus 182 ~~~~~i~~~i~~~~~iv-vlNK-~--Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~ 253 (337)
T 2qm8_A 182 DELQGIKKGIFELADMI-AVNK-A--DDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWS 253 (337)
T ss_dssp -----CCTTHHHHCSEE-EEEC-C--STTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHH
T ss_pred ccHHHHHHHHhccccEE-EEEc-h--hccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHH
Confidence 00 000 001111110 0111 0 1 1124589999999999999987 688887 99999999999999
Q ss_pred HHHHHHH
Q 004932 289 TLKKLAS 295 (723)
Q Consensus 289 ~L~~l~~ 295 (723)
.|.++.+
T Consensus 254 ~I~~~~~ 260 (337)
T 2qm8_A 254 RIEDHRS 260 (337)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988754
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.8e-11 Score=133.14 Aligned_cols=158 Identities=15% Similarity=0.200 Sum_probs=93.2
Q ss_pred eeece-eeEEeCCcEEEEECCCCCcHHHHHHH--HHcCCCCCC--CceeEEEECCEeCCCCCceEEEEcCCCccCCCCCH
Q 004932 125 VVKSS-NGYALPGTMTVIMGPAKSGKSTLLRA--IAGRLPHSA--RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTV 199 (723)
Q Consensus 125 iL~~v-s~~v~~Ge~~aIlGpsGsGKSTLL~~--L~G~~~~~~--~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV 199 (723)
-|+.+ .+-+++|++++|+||||||||||++. +++..++.. .-.+.++++++. .+ ..
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~---------------~~----~~ 226 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG---------------TF----RP 226 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CC----CH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC---------------cc----CH
Confidence 34443 36789999999999999999999994 456665421 012355555432 11 11
Q ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch--HhhhhhcCCCCCCCCCH-HHHHHHHHHHHHh--hCCcEEEEeCC
Q 004932 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD--YANKLIGGHCYMKGLPC-GERRRVRIARELV--MRPHVLFIDEP 274 (723)
Q Consensus 200 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~ig~~~~~~~LSG-GerqRv~IA~aL~--~~P~lLlLDEP 274 (723)
.++.+..+.+|+.. ..+... ..+..++ .+.+.+.-+.+++ .+|+++++|||
T Consensus 227 --------------------~rl~~~a~~~gl~~~~vleni~----~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~ 282 (400)
T 3lda_A 227 --------------------VRLVSIAQRFGLDPDDALNNVA----YARAYNADHQLRLLDAAAQMMSESRFSLIVVDSV 282 (400)
T ss_dssp --------------------HHHHHHHHHTTCCHHHHHHTEE----EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETG
T ss_pred --------------------HHHHHHHHHcCCChHhHhhcEE----EeccCChHHHHHHHHHHHHHHHhcCCceEEecch
Confidence 11112223333321 111110 1112222 2334444444443 46999999999
Q ss_pred CCCCCHHHH------------HHHHHHHHHHHH-cCCEEEEEEeCCh------------------HHHHhcCCEEEEEeC
Q 004932 275 LYHLDSVSA------------LLMMVTLKKLAS-TGCTLLFTINQSS------------------TEVFGLFDRICLLSN 323 (723)
Q Consensus 275 TsgLD~~~~------------~~i~~~L~~l~~-~g~tvi~t~h~~~------------------~~i~~~~D~v~vL~~ 323 (723)
++.+|+... .++++.|+++++ .|.|||+++|... ..+.+.+|.++.|++
T Consensus 283 t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~ 362 (400)
T 3lda_A 283 MALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKK 362 (400)
T ss_dssp GGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEE
T ss_pred hhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEe
Confidence 999996533 678888999885 5999999888711 234678999999987
Q ss_pred Ce
Q 004932 324 GN 325 (723)
Q Consensus 324 G~ 325 (723)
|+
T Consensus 363 ~~ 364 (400)
T 3lda_A 363 GK 364 (400)
T ss_dssp CS
T ss_pred cC
Confidence 64
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-13 Score=152.83 Aligned_cols=131 Identities=17% Similarity=0.159 Sum_probs=90.3
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------CceEEEEc------
Q 004932 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---------YGSYGFVE------ 188 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---------~~~~~yv~------ 188 (723)
.+|+++ + .++|++++|+|||||||||||++|+|.+++.. |+|.+.|.+++.. ...+++.+
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~---g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSE---RNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTT---SCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCC---CEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 367777 4 37999999999999999999999999988764 9999988765321 11234433
Q ss_pred ---CCCcc--CCC----CCHHHHHHHHHHhcC--CCccc-hHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH
Q 004932 189 ---RETTL--IGS----LTVREYLYYSALLQL--PGFFC-QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (723)
Q Consensus 189 ---Q~~~l--~~~----lTV~E~l~~~~~~~~--~~~~~-~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (723)
|++.. ++. .|+.+++.++..-.+ ..... ...+ +.+.+..+++.+.. .. ..|||||+||
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~~------~~LSgg~~QR- 301 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--IS------SSLLGVLAQR- 301 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--HH------HHEEEEEEEE-
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--HH------HHHHHHHHHH-
Confidence 77654 343 588888876532110 00001 1122 33357778887654 33 3899999999
Q ss_pred HHHHHHhhCCcEEE
Q 004932 257 RIARELVMRPHVLF 270 (723)
Q Consensus 257 ~IA~aL~~~P~lLl 270 (723)
||++|+.+|++..
T Consensus 302 -LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 -LVRTLCPDCKEPY 314 (418)
T ss_dssp -EEEEECTTTCEEE
T ss_pred -hhhhhcCCCCccC
Confidence 9999999999876
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-14 Score=164.14 Aligned_cols=177 Identities=14% Similarity=0.061 Sum_probs=104.6
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-CCCC-CceEEEEcCCCc--------
Q 004932 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMP-YGSYGFVERETT-------- 192 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~-~~~~-~~~~~yv~Q~~~-------- 192 (723)
..+++++++.+++|+.++|+|||||||||||++|+|+++++. |.|.+.|.. .... ...+.++.|...
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~---giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDA---KVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTC---CEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCC---CEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 457899999999999999999999999999999999998874 999998864 2211 233555554322
Q ss_pred --------------cCCCCCHHHHHHHHHHhcCCCcc--chHHHHHHHHHHHcCC-----chHhhhhhcC-CCCCCCCCH
Q 004932 193 --------------LIGSLTVREYLYYSALLQLPGFF--CQRKNVVEDAIHAMSL-----SDYANKLIGG-HCYMKGLPC 250 (723)
Q Consensus 193 --------------l~~~lTV~E~l~~~~~~~~~~~~--~~~~~~v~~~l~~lgL-----~~~~~~~ig~-~~~~~~LSG 250 (723)
+++.++..|++.+.......... +-....+.++++.+.. ....-..+.. ......+||
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 22345555544332222111000 0000112333333322 1110000000 012345799
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE--EEeCChHHHHhcC
Q 004932 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF--TINQSSTEVFGLF 315 (723)
Q Consensus 251 GerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~--t~h~~~~~i~~~~ 315 (723)
|||||++++. + | |+|||+.....+++.|.++.++|.|+++ ++|.. .++...|
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l-~ei~~~~ 457 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKL-EKMADFL 457 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHH-HHHHHHH
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHH-HHHHHHc
Confidence 9999987751 2 7 9999998777777777666666777764 45543 4554444
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-11 Score=131.70 Aligned_cols=133 Identities=14% Similarity=0.103 Sum_probs=73.7
Q ss_pred EEEECCCCCcHHHHHHHHHc-CCCCCCCceeEEEECCEeCCC---CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCc
Q 004932 139 TVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEM---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G-~~~~~~~~~G~I~i~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 214 (723)
+.|.||||+|||||+++|+| +..++. |++.++|.+... ....+++++|.+.+.-..+-. . .
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~---g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~--~- 103 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGV---YRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDM---------G--N- 103 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTC---CC------------------CCEECSSEEEECCC----------------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCC---CeEEecceeecccccccceeeeecccceEEecHhhc---------C--C-
Confidence 89999999999999999999 666654 999998865321 124567777766432111000 0 0
Q ss_pred cchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 004932 215 FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294 (723)
Q Consensus 215 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~ 294 (723)
.....+++.++.+......+. .. .||| +..+|+++|+|||++ ||..++..+.+.|.+..
T Consensus 104 --~~~~~~~~~i~~~~~~~~~~~------~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 104 --NDRIVIQELLKEVAQMEQVDF------QD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp --CCHHHHHHHHHHHTTTTC------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred --cchHHHHHHHHHHHHhccccc------cc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 011123344433321111111 00 3566 788999999999999 99999999999998864
Q ss_pred HcCCEEEEEEeCCh
Q 004932 295 STGCTLLFTINQSS 308 (723)
Q Consensus 295 ~~g~tvi~t~h~~~ 308 (723)
.+.++|+++|++.
T Consensus 163 -~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 163 -KNIRLIMVCDSMS 175 (354)
T ss_dssp -TTEEEEEEESCSC
T ss_pred -CCCEEEEEeCCHH
Confidence 3678888889875
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.3e-14 Score=140.42 Aligned_cols=121 Identities=17% Similarity=0.120 Sum_probs=67.4
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCC
Q 004932 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLP 212 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~ 212 (723)
.++|++++|+||||||||||+++|+|++++. | ..++++++++..+.. +..+++........+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g-------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G-------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T-------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C-------------CceEEEecCCCcCCH-HHHHHhcccccCCCC
Confidence 4589999999999999999999999998753 2 123444444433321 111211000000011
Q ss_pred CccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHH-HHHhhCCcEEEEeCCC
Q 004932 213 GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA-RELVMRPHVLFIDEPL 275 (723)
Q Consensus 213 ~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA-~aL~~~P~lLlLDEPT 275 (723)
. ........+.+..+...+..+... .+...++|+||+||+++| ++++.++.++++|||.
T Consensus 81 ~--~~~~~~~~~~l~~l~~~~~i~~p~--~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 81 E--TFDFEGFQRLCHALKHQERVIYPL--FDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp G--GBCHHHHHHHHHHHHHCSCEEEEE--EETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred c--hhhHHHHHHHHHHHhcCCceeccc--CCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 0 011222333333332111111111 123346899999999998 7888888888888874
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.10 E-value=7.4e-12 Score=132.87 Aligned_cols=104 Identities=18% Similarity=0.228 Sum_probs=70.0
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCC-----CceEEEEcCCCc------------
Q 004932 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV---NGAKSEMP-----YGSYGFVERETT------------ 192 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i---~G~~~~~~-----~~~~~yv~Q~~~------------ 192 (723)
+.+|++++|+||||||||||+|+|+|+.+|+. |+|.+ +|+..... .+.++|++|.+.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~---G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLRV---SEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcccccccc---cceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 44799999999999999999999999998874 99999 88764321 124789999864
Q ss_pred ----cCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCc-hHhhhhhcCCCCCCCCCH
Q 004932 193 ----LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPC 250 (723)
Q Consensus 193 ----l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ig~~~~~~~LSG 250 (723)
++|.+|+ ||+.|+. +. . ..+...++.++++.++|. +..++.+. .||+
T Consensus 243 ~~~~l~~~~~~-~n~~~~~-~~-~--~~e~~~~v~~~l~~~~L~~~~~~~~~~------~lse 294 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSD-CN-H--VDEPECGVKEAVENGEIAESRYENYVK------MFYE 294 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTT-CC-S--SSCSSCHHHHHHHHTSSCHHHHHHHHH------HHHH
T ss_pred HHHHHHHhccc-ccCcCCC-Cc-C--CCCCCcHHHHHHHcCCCCHHHHHHHHH------HHHH
Confidence 6889999 9887642 11 1 112345689999999995 67776543 6764
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.04 E-value=3.9e-11 Score=127.37 Aligned_cols=115 Identities=22% Similarity=0.248 Sum_probs=68.1
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCCC---c-eEEEEcCCCccCC----CCCH
Q 004932 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV---NGAKSEMPY---G-SYGFVERETTLIG----SLTV 199 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i---~G~~~~~~~---~-~~~yv~Q~~~l~~----~lTV 199 (723)
+.+.+|++++|+||||+|||||+|+|+|..++.. |+|.+ +|+...... + ..+|++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRT---NEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccc---cceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 4566899999999999999999999999988764 99998 776532211 1 1689999987765 6899
Q ss_pred HHHH--HHHHH------hcCCC--ccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004932 200 REYL--YYSAL------LQLPG--FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 200 ~E~l--~~~~~------~~~~~--~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
|++ .|+.. ++... ...+....++++++.++|.+.+..... .++.|++||
T Consensus 245 -e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~------~lls~~~~~ 303 (307)
T 1t9h_A 245 -EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYV------EFMTEIKDR 303 (307)
T ss_dssp -HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH------HHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHH------HHHHHHhhc
Confidence 888 34311 11111 111234568999999999875544322 677787763
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-12 Score=141.00 Aligned_cols=148 Identities=22% Similarity=0.190 Sum_probs=95.4
Q ss_pred cceeeceeeEEeCC-------cEEEEECCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeC-----CCCCceEEEEcC
Q 004932 123 DKVVKSSNGYALPG-------TMTVIMGPAKSGKSTLLRAIAGRLPHS-ARMYGEVFVNGAKS-----EMPYGSYGFVER 189 (723)
Q Consensus 123 ~~iL~~vs~~v~~G-------e~~aIlGpsGsGKSTLL~~L~G~~~~~-~~~~G~I~i~G~~~-----~~~~~~~~yv~Q 189 (723)
+.+++++++.+++| +.++|.||||+|||||+++|+|.+... ...+|.+..++.+. ......+.+++|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 45788888888776 899999999999999999999986221 01246665555432 112346899999
Q ss_pred CCccCCCCCHHHHHHHHHHhcCCC---ccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 004932 190 ETTLIGSLTVREYLYYSALLQLPG---FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRP 266 (723)
Q Consensus 190 ~~~l~~~lTV~E~l~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P 266 (723)
.+.+.+ ++.|++.......... ......+.++..++.++|.. +.+. +..||+|+|||+.++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~------~~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR------SGLLSSPLRSRFGII------- 174 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESC------GGGSCHHHHTTCSEE-------
T ss_pred hhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCC------cccCCHHHHHhcCce-------
Confidence 888765 7888885433221100 00012233444555555544 4443 348999999998665
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 004932 267 HVLFIDEPLYHLDSVSALLMMVTLKKLAS 295 (723)
Q Consensus 267 ~lLlLDEPTsgLD~~~~~~i~~~L~~l~~ 295 (723)
.+||+.+..++.+.|++.++
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999875
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.02 E-value=2e-13 Score=149.63 Aligned_cols=169 Identities=17% Similarity=0.136 Sum_probs=114.6
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCC------C---CCCceeEEEECCEeCC------CCCce---EEEEcCCCcc
Q 004932 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLP------H---SARMYGEVFVNGAKSE------MPYGS---YGFVERETTL 193 (723)
Q Consensus 132 ~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~------~---~~~~~G~I~i~G~~~~------~~~~~---~~yv~Q~~~l 193 (723)
.+++|+.++|+|+||||||||+|+|+|... | -....|.|.++|.... ...+. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 456899999999999999999999999321 0 0123699999884210 11222 2466777888
Q ss_pred CCCCCHHHHH--HHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC--cEE
Q 004932 194 IGSLTVREYL--YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRP--HVL 269 (723)
Q Consensus 194 ~~~lTV~E~l--~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P--~lL 269 (723)
.+..+..|.+ .|...++.. +.++..++..+ +.....+||+. +| +++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~----------d~il~Vvd~~~--------d~~i~~v~~~~------------dP~~di~ 145 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV----------DAIYQVVRAFD--------DAEIIHVEGDV------------DPIRDLS 145 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC----------SEEEEEEECCC--------TTCSSCCSSSS------------CHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH----------HHHHHHHhccc--------cceeeeecccc------------Ccchhhh
Confidence 8777766655 332222210 00111111111 11223456543 89 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHH-HHcCCEEEEEEeCChHHHHhcCCEEE-EEeCC-eEEEEeChh
Q 004932 270 FIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTEVFGLFDRIC-LLSNG-NTLFFGETL 333 (723)
Q Consensus 270 lLDEPTsgLD~~~~~~i~~~L~~l-~~~g~tvi~t~h~~~~~i~~~~D~v~-vL~~G-~iv~~G~~~ 333 (723)
++|||+.++|+......++.++.+ .+.|.|++ +|.. .++.++||++. +|.+| ++++.|+..
T Consensus 146 ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 146 IIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCC
Confidence 999999999999999999999998 77777754 5654 67889999999 99999 998877653
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-13 Score=144.02 Aligned_cols=126 Identities=17% Similarity=0.176 Sum_probs=84.2
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC-----ceEEEEcCCC-ccCCC
Q 004932 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY-----GSYGFVERET-TLIGS 196 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~-----~~~~yv~Q~~-~l~~~ 196 (723)
..+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.+..... +.+++++|.. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 45889999999999 999999999999999999998765 78999986542211 2345555543 33444
Q ss_pred CCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 004932 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (723)
Q Consensus 197 lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTs 276 (723)
+++.|++.... +. ...... + .+.+..++.+. .|||||+||+.|++++..+|++| ||++.
T Consensus 106 i~~~Deid~~~----~~---r~~~~~----~--~~~~~~~~~l~------~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 106 VIFFDEVDALC----PR---RSDRET----G--ASVRVVNQLLT------EMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEEETCTTTC----C------------------CTTHHHHHHH------HHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred eEeeehhhhhh----cc---cCCCcc----h--HHHHHHHHHHH------hhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 44444442210 00 000000 0 12344555443 89999999999999999999985 98864
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=4.1e-13 Score=133.70 Aligned_cols=57 Identities=14% Similarity=0.206 Sum_probs=42.2
Q ss_pred HHH-HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 004932 258 IAR-ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (723)
Q Consensus 258 IA~-aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (723)
+++ +++.+|++++|||+|+++|..+...|.+.|.++.++ +...|.+ ..+|+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 455 677788888889999999999999999999887653 1112311 56999988753
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-09 Score=122.85 Aligned_cols=173 Identities=12% Similarity=0.056 Sum_probs=110.1
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 004932 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG-EVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G-~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (723)
...|+++.+-+.+|+++.|.|++|+|||||+..|++...+.. | .|.+ +.-+ ++..+
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~---g~~Vl~--------------~s~E------~s~~~ 246 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT---NENVAI--------------FSLE------MSAQQ 246 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS---SCCEEE--------------EESS------SCHHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC---CCcEEE--------------EECC------CCHHH
Confidence 457888888899999999999999999999999998654311 3 2332 2211 22222
Q ss_pred HHHH--HHHhcC-------CCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHh--hCCcEEE
Q 004932 202 YLYY--SALLQL-------PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV--MRPHVLF 270 (723)
Q Consensus 202 ~l~~--~~~~~~-------~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~--~~P~lLl 270 (723)
...- +..... .........++.+.++.++..+..-. ...++|.+|.+ +.++.++ .+|++++
T Consensus 247 l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~------d~~~~s~~~i~--~~~~~l~~~~~~~liv 318 (454)
T 2r6a_A 247 LVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYID------DTPSIRVSDIR--AKCRRLKQESGLGMIV 318 (454)
T ss_dssp HHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEE------CCTTCCHHHHH--HHHHHHHTTTCCCEEE
T ss_pred HHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEE------CCCCCCHHHHH--HHHHHHHHHcCCCEEE
Confidence 2211 101111 10111123345555555543222111 12479999987 5667776 6899999
Q ss_pred EeCCCCCCC--------HHHHHHHHHHHHHHHH-cCCEEEEEEeC-----------Ch-------HHHHhcCCEEEEEeC
Q 004932 271 IDEPLYHLD--------SVSALLMMVTLKKLAS-TGCTLLFTINQ-----------SS-------TEVFGLFDRICLLSN 323 (723)
Q Consensus 271 LDEPTsgLD--------~~~~~~i~~~L~~l~~-~g~tvi~t~h~-----------~~-------~~i~~~~D~v~vL~~ 323 (723)
+|+++...+ ......+.+.|+.+++ .|.+||+++|- |. ..+.+.+|.|++|..
T Consensus 319 ID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r 398 (454)
T 2r6a_A 319 IDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398 (454)
T ss_dssp EECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred EccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence 999999874 2344678888888885 58999997771 32 146778999999987
Q ss_pred CeE
Q 004932 324 GNT 326 (723)
Q Consensus 324 G~i 326 (723)
++.
T Consensus 399 ~~~ 401 (454)
T 2r6a_A 399 DDY 401 (454)
T ss_dssp TTC
T ss_pred ccc
Confidence 654
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.95 E-value=3.2e-10 Score=120.50 Aligned_cols=113 Identities=17% Similarity=0.129 Sum_probs=79.6
Q ss_pred eeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHH
Q 004932 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSAL 208 (723)
Q Consensus 129 vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~ 208 (723)
+++..++|++++|+|+|||||||+++.|++.+.+.+ |+|.+.+.+.. +. ...|
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g---~kV~lv~~D~~---r~--------------~a~e------- 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG---KSVVLAAADTF---RA--------------AAIE------- 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEECTT---CH--------------HHHH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcC---CEEEEEccccc---cH--------------HHHH-------
Confidence 344556899999999999999999999999987653 77877665421 00 0111
Q ss_pred hcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH---HHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 004932 209 LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV---RIARELVMRPHVLFIDEPLYHLDSVSALL 285 (723)
Q Consensus 209 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv---~IA~aL~~~P~lLlLDEPTsgLD~~~~~~ 285 (723)
.+..+.+.+++.. ....|||+.+++ +|++++..+|+++|+|||.. ......
T Consensus 150 ------------qL~~~~~~~gl~~-----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~ 203 (306)
T 1vma_A 150 ------------QLKIWGERVGATV-----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKN 203 (306)
T ss_dssp ------------HHHHHHHHHTCEE-----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHH
T ss_pred ------------HHHHHHHHcCCcE-----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHH
Confidence 1223344445432 125789999999 99999999999999999974 345556
Q ss_pred HHHHHHHHH
Q 004932 286 MMVTLKKLA 294 (723)
Q Consensus 286 i~~~L~~l~ 294 (723)
+++.|+++.
T Consensus 204 l~~eL~~l~ 212 (306)
T 1vma_A 204 LMEELRKVH 212 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666654
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.95 E-value=3e-09 Score=107.89 Aligned_cols=60 Identities=25% Similarity=0.289 Sum_probs=44.9
Q ss_pred hCCcEEEEeCCCCCC--CHHHHHHHHHHHHHHH-HcCCEEEEEEeCChHH-------HHhcCCEEEEEeC
Q 004932 264 MRPHVLFIDEPLYHL--DSVSALLMMVTLKKLA-STGCTLLFTINQSSTE-------VFGLFDRICLLSN 323 (723)
Q Consensus 264 ~~P~lLlLDEPTsgL--D~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~-------i~~~~D~v~vL~~ 323 (723)
.+|+++++|||++.+ |+....+++..|.+++ +.|.|||+++|..... +.+.+|.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 6655566666666665 6689999988876531 4678999999964
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-11 Score=131.89 Aligned_cols=94 Identities=16% Similarity=0.169 Sum_probs=74.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEE-------------------eCCcEEEEECCCCCcHHHHHHHHHcCCC--CC
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYA-------------------LPGTMTVIMGPAKSGKSTLLRAIAGRLP--HS 163 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v-------------------~~Ge~~aIlGpsGsGKSTLL~~L~G~~~--~~ 163 (723)
.++++||++.|. ++++++++.+ .+|+++||+||||||||||+++|+|++. |+
T Consensus 37 ~i~~~~v~~~y~-------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 37 DLSLEEVAEIYL-------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp TCCHHHHHHTHH-------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccchHhHHHHHH-------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 477888887662 5889999887 8999999999999999999999999877 65
Q ss_pred CCceeEEEE---CCEeCCC-CCceEEEEcCCCccCCCCCHHHHHHHHHHh
Q 004932 164 ARMYGEVFV---NGAKSEM-PYGSYGFVERETTLIGSLTVREYLYYSALL 209 (723)
Q Consensus 164 ~~~~G~I~i---~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~ 209 (723)
+ |+|.+ +|..... ..+.++++ |+..+++.+|+.+++.+...+
T Consensus 110 ~---G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 110 H---RRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp C---CCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHH
T ss_pred C---CeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHH
Confidence 4 99999 8764311 11346777 777777889999999776544
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.8e-09 Score=112.70 Aligned_cols=118 Identities=14% Similarity=0.057 Sum_probs=82.5
Q ss_pred eceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHH
Q 004932 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYS 206 (723)
Q Consensus 127 ~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~ 206 (723)
+++++. +|++++|+|+||+||||++..|+|.+.+.+ |+|.+.+.+.... .++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~---~~v~l~~~d~~~~----------------~~~-~ql--- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKG---RRPLLVAADTQRP----------------AAR-EQL--- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTT---CCEEEEECCSSCH----------------HHH-HHH---
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEecCCcccH----------------hHH-HHH---
Confidence 678887 899999999999999999999999987653 8888876543110 000 111
Q ss_pred HHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC-CCCCCHHHHHH
Q 004932 207 ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP-LYHLDSVSALL 285 (723)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEP-TsgLD~~~~~~ 285 (723)
..+.+..++..... + .+-.-.+.+|.+|+.+...+++++|+||| ++++|......
T Consensus 146 ----------------~~~~~~~~l~~~~~---~-----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~ 201 (295)
T 1ls1_A 146 ----------------RLLGEKVGVPVLEV---M-----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGE 201 (295)
T ss_dssp ----------------HHHHHHHTCCEEEC---C-----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHH
T ss_pred ----------------HHhcccCCeEEEEc---C-----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHH
Confidence 11223334432110 0 12234466789999998899999999999 99999988888
Q ss_pred HHHHHHHH
Q 004932 286 MMVTLKKL 293 (723)
Q Consensus 286 i~~~L~~l 293 (723)
+.+..+.+
T Consensus 202 l~~~~~~~ 209 (295)
T 1ls1_A 202 LARLKEVL 209 (295)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhhc
Confidence 87777665
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.80 E-value=9.7e-11 Score=135.91 Aligned_cols=159 Identities=18% Similarity=0.107 Sum_probs=98.5
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCc---------
Q 004932 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETT--------- 192 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~--------- 192 (723)
...+++++++.+.+|+.++|+||||+|||||+++|+|.+++.. .|.+.+++.+.......++++++...
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~--~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~ 123 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET--LEDILVFPNPEDENMPRIKTVPACQGRRIVEKYRE 123 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS--CEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCccc--CCeEEEeCCcccccCCcEEEEecchHHHHHHHHHH
Confidence 3568899999999999999999999999999999999987652 48888888765443445788776431
Q ss_pred -------------cCCCCCHHHHHHHHHHhcCCCcc-chHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHH
Q 004932 193 -------------LIGSLTVREYLYYSALLQLPGFF-CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (723)
Q Consensus 193 -------------l~~~lTV~E~l~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~I 258 (723)
.+..+++.+|+.....-..+... ..... ..-+.+|..+... ....++|+|++|++..
T Consensus 124 ~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~---~~~~L~G~~~~~~------~~~g~~~~g~~~~i~~ 194 (604)
T 3k1j_A 124 KAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGA---HAGALLGDVRHDP------FQSGGLGTPAHERVEP 194 (604)
T ss_dssp HHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTC---CHHHHHCEECCCC------C----CCCCGGGGEEC
T ss_pred hhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCC---CHHhcCceEEech------hhcCCccccccccccC
Confidence 11111111111000000000000 00000 0011112111100 1124799999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 004932 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292 (723)
Q Consensus 259 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~ 292 (723)
++....++.+||+||... |++..+..+.+.|.+
T Consensus 195 g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999988 899888888777764
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.80 E-value=5.5e-09 Score=113.02 Aligned_cols=148 Identities=23% Similarity=0.253 Sum_probs=87.5
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhc
Q 004932 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~ 210 (723)
+-+++|+++.|.||+|||||||+..++......+ |. +.|+.-+..+.+ . ++
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g---~~--------------vlyi~~E~~~~~------~--~a---- 106 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAG---GI--------------AAFIDAEHALDP------E--YA---- 106 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT---CC--------------EEEEESSCCCCH------H--HH----
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC---Ce--------------EEEEECCCCcCH------H--HH----
Confidence 3678999999999999999999888876432211 22 333333321110 0 01
Q ss_pred CCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC--CcEEEEeCCCCCC----------
Q 004932 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR--PHVLFIDEPLYHL---------- 278 (723)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~--P~lLlLDEPTsgL---------- 278 (723)
+.+|+.. .+-.+- ...+.. +-+.++++++.+ |+++++||+++.+
T Consensus 107 ----------------~~lG~~~-~~l~i~-----~~~~~e--~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~g 162 (349)
T 2zr9_A 107 ----------------KKLGVDT-DSLLVS-----QPDTGE--QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMG 162 (349)
T ss_dssp ----------------HHTTCCG-GGCEEE-----CCSSHH--HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC--
T ss_pred ----------------HHcCCCH-HHeEEe-----cCCCHH--HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccc
Confidence 1122210 000010 012332 345678888765 9999999999998
Q ss_pred CH---HHHHHHHHHHHHH----HHcCCEEEEEEeCChH---------------HHHhcCCEEEEEeCCeEEEEeC
Q 004932 279 DS---VSALLMMVTLKKL----ASTGCTLLFTINQSST---------------EVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 279 D~---~~~~~i~~~L~~l----~~~g~tvi~t~h~~~~---------------~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
|+ ..+..+.+.+++| .+.|.|||++.|.... .+.++||.++.++.++++..|+
T Consensus 163 d~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 163 DSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 33 2223445555555 3568999998775431 2567899999998877665554
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.9e-10 Score=128.26 Aligned_cols=177 Identities=15% Similarity=0.056 Sum_probs=102.2
Q ss_pred ceeeEEeCCcEEEEECCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCC--CHHHHH
Q 004932 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSL--TVREYL 203 (723)
Q Consensus 128 ~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G--~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~l--TV~E~l 203 (723)
.+++.+..+..++|.|++||||||++++|.. +...+. |++.+.+.+.+.. . .+....+|++ +|.++.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p---~~v~l~liDpK~~-e-----l~~~~~lPhl~~~Vvtd~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQP---EDVRFIMIDPKML-E-----LSVYEGIPHLLTEVVTDM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCT---TTEEEEEECCSSS-G-----GGGGTTCTTBSSSCBCSH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCC---ceEEEEEECCchh-h-----hhhhccCCcccceeecCH
Confidence 3667777899999999999999999999875 333322 6666555442210 0 0000111221 122222
Q ss_pred HHHHH-hcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH----------HHHHHHhhCCc-EEEE
Q 004932 204 YYSAL-LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV----------RIARELVMRPH-VLFI 271 (723)
Q Consensus 204 ~~~~~-~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv----------~IA~aL~~~P~-lLlL 271 (723)
..+.. ++. ...+.++| .+++...|+.+..+..- .....+||||+||. .+++++...|. ++++
T Consensus 230 ~~a~~~L~~--~~~EmerR-~~ll~~~Gv~~i~~yn~---~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvI 303 (512)
T 2ius_A 230 KDAANALRW--CVNEMERR-YKLMSALGVRNLAGYNE---KIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLV 303 (512)
T ss_dssp HHHHHHHHH--HHHHHHHH-HHHHHHTTCSSHHHHHH---HHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEE
T ss_pred HHHHHHHHH--HHHHHHHH-HHHHHHcCCccHHHHHH---HHHHHhhcCCcccccccccccchhccccccccCCcEEEEE
Confidence 11111 110 01122233 47788888876544210 01125788887752 35666778898 8999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHc----CCEEEEEEeCChHH-----H-HhcCCEEEE
Q 004932 272 DEPLYHLDSVSALLMMVTLKKLAST----GCTLLFTINQSSTE-----V-FGLFDRICL 320 (723)
Q Consensus 272 DEPTsgLD~~~~~~i~~~L~~l~~~----g~tvi~t~h~~~~~-----i-~~~~D~v~v 320 (723)
||++.-+|.. ...+.+.|.++++. |.++|+++|.|..+ + .++.+||++
T Consensus 304 DE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 304 DEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp ETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred eCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 9999998843 35566677766543 67899999998622 3 345566655
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-09 Score=120.78 Aligned_cols=51 Identities=14% Similarity=-0.023 Sum_probs=47.2
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 004932 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~ 177 (723)
..+|+++|+.+++ |+++|+|||||||||||++|+|+++|+. |+|.++|++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDL---TLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCT---TTCCCCCTTS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCC---CEEEECCEEc
Confidence 3589999999999 9999999999999999999999999875 9999999764
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=6.5e-09 Score=109.92 Aligned_cols=141 Identities=13% Similarity=0.110 Sum_probs=86.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCC
Q 004932 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPG 213 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~ 213 (723)
++|++++|+|+||+||||+++.|++.+.+.. | +.+.++.++.. ..++.|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~---G-------------~~V~lv~~D~~---r~~a~eqL~~~~------ 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEK---H-------------KKIAFITTDTY---RIAAVEQLKTYA------ 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTT---C-------------CCEEEEECCCS---STTHHHHHHHHH------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhc---C-------------CEEEEEecCcc---cchHHHHHHHHH------
Confidence 4799999999999999999999999886532 5 23455555442 335556554321
Q ss_pred ccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 004932 214 FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293 (723)
Q Consensus 214 ~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l 293 (723)
+..|+... ...+. ..-+.+|++ +.+|+++|+| |+|+|+.....+.++.+-+
T Consensus 158 -------------~~~gl~~~-----------~~~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l 208 (296)
T 2px0_A 158 -------------ELLQAPLE-----------VCYTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETI 208 (296)
T ss_dssp -------------TTTTCCCC-----------BCSSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHS
T ss_pred -------------HhcCCCeE-----------ecCCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHH
Confidence 11222110 01122 333555554 5999999999 9999987665554444333
Q ss_pred H---HcCCEEEE-EEeCChHHHHhcCCEEEEEeCCeEEEE
Q 004932 294 A---STGCTLLF-TINQSSTEVFGLFDRICLLSNGNTLFF 329 (723)
Q Consensus 294 ~---~~g~tvi~-t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (723)
. ..+.++++ ++|. ..++.+.+|++..+..|.++..
T Consensus 209 ~~~~~~~~~lVl~at~~-~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 209 PFESSIQSFLVLSATAK-YEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp CCCTTEEEEEEEETTBC-HHHHHHHTTTTSSSCCCEEEEE
T ss_pred hhcCCCeEEEEEECCCC-HHHHHHHHHHHhcCCCCEEEEe
Confidence 2 22334444 2444 3567777887766666777754
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.1e-09 Score=106.28 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=43.9
Q ss_pred eeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----CCCceEEEEcCCCccCCCCCHHHH
Q 004932 130 NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-----MPYGSYGFVERETTLIGSLTVREY 202 (723)
Q Consensus 130 s~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~-----~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (723)
|+.+.+|++++|+||||||||||+++|+|+.+ .+.++|.... .....++|++|+...++.+++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA 71 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence 45567899999999999999999999999864 2444553321 112357888887766555554443
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.3e-09 Score=106.95 Aligned_cols=38 Identities=21% Similarity=0.168 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l 293 (723)
+.+.+|++|+.+|+++++| ||++|.....++++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3477899999999999999 9999999999999988763
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.59 E-value=2.8e-11 Score=126.54 Aligned_cols=123 Identities=15% Similarity=0.128 Sum_probs=77.0
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C----CceEEEEcCCCc-cCCC
Q 004932 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P----YGSYGFVERETT-LIGS 196 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~-~----~~~~~yv~Q~~~-l~~~ 196 (723)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+... . .+.+++++|+.. ..+.
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 45889999999999 99999999999999999999875 2889998864210 0 122445555532 4455
Q ss_pred CCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 004932 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHV 268 (723)
Q Consensus 197 lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~l 268 (723)
+++.|++......+... .....+...+. .++.+ ..|||||+||+.|++++..+|++
T Consensus 135 i~~iDeid~l~~~~~~~-~~~~~~~~~~~---------~~~ll------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSG-VGGGNDEREQT---------LNQLL------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEETHHHHHCC---------CHHHHHH---------HHHHH------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EEehhhhHhhhcccccc-cCCcchHHHHH---------HHHHH------HHHhCCCCCCCEEEEEecCCchh
Confidence 56666663221111000 00000011111 12222 26899999999999999999976
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=4.3e-11 Score=123.13 Aligned_cols=123 Identities=15% Similarity=0.128 Sum_probs=75.3
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C----CceEEEEcCCC-ccCCC
Q 004932 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P----YGSYGFVERET-TLIGS 196 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~-~----~~~~~yv~Q~~-~l~~~ 196 (723)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.+... . .+.+++++|.. ...+.
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 35789999999999 99999999999999999999875 2889988754210 0 11234455542 23445
Q ss_pred CCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 004932 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHV 268 (723)
Q Consensus 197 lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~l 268 (723)
+++.|++......+.... ....+...+. .+... ..|||||+||+.|++++..+|++
T Consensus 111 i~~~Deid~l~~~~~~~~-~~~~~~~~~~---------~~~ll------~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGV-GGGNDEREQT---------LNQLL------VEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp EEEEETHHHHHC----------CHHHHHH---------HHHHH------HHHHTCCTTCCEEEEEEESCGGG
T ss_pred EEEehhhhhhhcccCccc-cccchHHHHH---------HHHHH------HHHhCCCCCCCEEEEEccCCchh
Confidence 555555532211110000 0000001111 12222 26889999999999999999986
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.46 E-value=4.3e-08 Score=106.03 Aligned_cols=32 Identities=28% Similarity=0.320 Sum_probs=28.4
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 004932 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
+-+.+|+++.|.||+|||||||+..+++...+
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35779999999999999999999999987654
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.8e-08 Score=98.92 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=23.3
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHH-cCCCC
Q 004932 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA-GRLPH 162 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~-G~~~~ 162 (723)
.+..+++|+.+++|++++|+||||||||||+++|+ |+.++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 35678999999999999999999999999999999 98754
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.39 E-value=3.8e-07 Score=102.41 Aligned_cols=59 Identities=20% Similarity=0.211 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----HcCCEEEEEEeCCh
Q 004932 250 CGERRRVRIARELVMRPHVLFIDEP----------LYHLDSVSALLMMVTLKKLA----STGCTLLFTINQSS 308 (723)
Q Consensus 250 GGerqRv~IA~aL~~~P~lLlLDEP----------TsgLD~~~~~~i~~~L~~l~----~~g~tvi~t~h~~~ 308 (723)
|++++|..+++|....|.|||+||+ +.|.|......+.++|..+. ..+..||.++|.|.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5778888899999999999999999 44677777777777777763 34677888888763
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.5e-07 Score=92.59 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=32.7
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~ 294 (723)
...|++|+.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887754
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.30 E-value=9e-07 Score=95.04 Aligned_cols=127 Identities=12% Similarity=0.170 Sum_probs=83.3
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHH
Q 004932 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (723)
.-|+.+.+-+.+|+++.|.|++|+|||||+.-++....... +. +.|+.- .++..+..
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g---~~--------------Vl~fSl------Ems~~ql~ 90 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDD---RG--------------VAVFSL------EMSAEQLA 90 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT---CE--------------EEEEES------SSCHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---Ce--------------EEEEeC------CCCHHHHH
Confidence 45666666788999999999999999999988876432111 22 333221 23443322
Q ss_pred HHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 004932 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (723)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~ 283 (723)
.++......+.+.+..+ | .||.+|.+|+..|...+.++++.+.|+|... .
T Consensus 91 ----------------~Rlls~~~~v~~~~l~~---g------~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i 140 (338)
T 4a1f_A 91 ----------------LRALSDLTSINMHDLES---G------RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----I 140 (338)
T ss_dssp ----------------HHHHHHHHCCCHHHHHH---T------CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----H
T ss_pred ----------------HHHHHHhhCCCHHHHhc---C------CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----H
Confidence 11212222233333332 2 7999999999999999999999999998654 3
Q ss_pred HHHHHHHHHHHHc--CCEEEEE
Q 004932 284 LLMMVTLKKLAST--GCTLLFT 303 (723)
Q Consensus 284 ~~i~~~L~~l~~~--g~tvi~t 303 (723)
.+|...++++.++ |..+|++
T Consensus 141 ~~i~~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 141 EQIRLQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEE
Confidence 3677777777654 5666664
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.30 E-value=2.1e-08 Score=101.96 Aligned_cols=57 Identities=16% Similarity=0.078 Sum_probs=39.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~ 177 (723)
.++++|++..+. . ++.+.+ ++++|+|||||||||||++|+|++.|+. |+|.++|.+.
T Consensus 9 ~l~l~~~~~~~~-------~-----~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~---G~i~~~g~~~ 65 (227)
T 1qhl_A 9 SLTLINWNGFFA-------R-----TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDL---TLLHFRNTTE 65 (227)
T ss_dssp EEEEEEETTEEE-------E-----EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCT---TTC-------
T ss_pred EEEEEeeecccC-------C-----EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCC---CeEEECCEEc
Confidence 467777754331 0 344556 8999999999999999999999998875 9999998764
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.6e-07 Score=109.93 Aligned_cols=81 Identities=15% Similarity=0.140 Sum_probs=62.4
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE-e
Q 004932 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLY-HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL-S 322 (723)
Q Consensus 245 ~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL-~ 322 (723)
+.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.......++++++.+++...+.+++++..++ .
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~~vi~v 267 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAV 267 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSCCEEEC
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCCCcccc
Confidence 44689999999999999999999999999996 999888777777776665556788887555656777777753333 2
Q ss_pred CCe
Q 004932 323 NGN 325 (723)
Q Consensus 323 ~G~ 325 (723)
.|+
T Consensus 268 ~gr 270 (773)
T 2xau_A 268 PGR 270 (773)
T ss_dssp CCC
T ss_pred cCc
Confidence 443
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=98.21 E-value=5.1e-06 Score=88.38 Aligned_cols=37 Identities=11% Similarity=-0.031 Sum_probs=31.5
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC
Q 004932 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
..-|+++.+-+.+|+++.|.|++|+|||||+..++..
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3467777777899999999999999999999888753
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.21 E-value=4.1e-08 Score=97.19 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=31.8
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 004932 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~ 177 (723)
.++|++++|+||||||||||+++|+|.+ |.+.++|.+.
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~ 63 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAF 63 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGG
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEccccc
Confidence 3479999999999999999999999975 7788887643
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.5e-07 Score=97.02 Aligned_cols=52 Identities=21% Similarity=0.265 Sum_probs=36.0
Q ss_pred eEEEEeE-EEEEecccccccceeeceeeEEeC---CcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 105 SVVWKDL-TVTIKGKRRYSDKVVKSSNGYALP---GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 105 ~l~~~~l-s~~~~~~~~~~~~iL~~vs~~v~~---Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++++|+ ++.|. ....+|+|+|+.+++ |+.++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~----~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD----EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec----CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5889999 99882 235799999999999 9999999999999999999999865
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.16 E-value=2.4e-06 Score=92.74 Aligned_cols=148 Identities=14% Similarity=0.147 Sum_probs=82.8
Q ss_pred CcE-EEEECCCCCcHHHHHHHHHcCCCCC--------CCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHHHHHH
Q 004932 136 GTM-TVIMGPAKSGKSTLLRAIAGRLPHS--------ARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYS 206 (723)
Q Consensus 136 Ge~-~aIlGpsGsGKSTLL~~L~G~~~~~--------~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~ 206 (723)
|-. ++|+|++|||||||+|.|+|..... ...+|.|.++|.+... ....|++.+.+ ...|.. ..-.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l-~DT~G~i~~lp----~~lve~-f~~t 251 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML-VDTVGFIRGIP----PQIVDA-FFVT 251 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE-EECCCBCSSCC----GGGHHH-HHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE-EeCCCchhcCC----HHHHHH-HHHH
Confidence 444 9999999999999999999986421 0246899998864311 01234333321 111221 1100
Q ss_pred H-HhcC----------CCcc---chHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHH----HHH-hhCCc
Q 004932 207 A-LLQL----------PGFF---CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA----REL-VMRPH 267 (723)
Q Consensus 207 ~-~~~~----------~~~~---~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA----~aL-~~~P~ 267 (723)
. ..+. .... ....+.+.++++.+++.+..--.+. + ....+|+|+++|+.++ +++ ..+|+
T Consensus 252 l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~-N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~ 329 (364)
T 2qtf_A 252 LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTL-N-KIDKINGDLYKKLDLVEKLSKELYSPIFD 329 (364)
T ss_dssp HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEE-E-CGGGCCSCHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEE-E-CCCCCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 0 0110 0000 0112235667777776543200111 1 1225788888988887 554 33445
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 004932 268 VLFIDEPLYHLDSVSALLMMVTLKKLAS 295 (723)
Q Consensus 268 lLlLDEPTsgLD~~~~~~i~~~L~~l~~ 295 (723)
+ +|+|++|......+.+.|.++..
T Consensus 330 ~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 330 V----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp E----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred E----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4 89999999999999999988764
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.12 E-value=4.4e-06 Score=90.39 Aligned_cols=58 Identities=9% Similarity=0.033 Sum_probs=45.9
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEe-CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEE
Q 004932 245 MKGLPCGERRRVRIARELVMRPHVLFID-EPLYHLDSVSALLMMVTLKKLASTGCTLLFTI 304 (723)
Q Consensus 245 ~~~LSGGerqRv~IA~aL~~~P~lLlLD-EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~ 304 (723)
+..+|+||+|++. +.+...++-++++| ++++|+|...+..+++.++.... +..+|++.
T Consensus 229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~ 287 (357)
T 2e87_A 229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVI 287 (357)
T ss_dssp STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEE
T ss_pred hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEE
Confidence 3478999999886 55556777889999 99999999998888888777654 66666666
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.7e-07 Score=91.23 Aligned_cols=51 Identities=25% Similarity=0.298 Sum_probs=40.7
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEE--EECCEeC
Q 004932 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV--FVNGAKS 177 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I--~i~G~~~ 177 (723)
....+.++...++|++++|+||||||||||+++|++++.. .|.+ .++|.+.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~----~G~~~~~~d~d~~ 64 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ----KGKLCYILDGDNV 64 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh----cCceEEEecCchh
Confidence 3455666777789999999999999999999999998763 2766 7777543
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.03 E-value=9.1e-07 Score=94.45 Aligned_cols=76 Identities=13% Similarity=0.058 Sum_probs=54.8
Q ss_pred eeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--------------CceEEEE-cCC
Q 004932 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--------------YGSYGFV-ERE 190 (723)
Q Consensus 126 L~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--------------~~~~~yv-~Q~ 190 (723)
++++++.+++|++++|+|+||+||||++..|++.+.+.+ |+|.+.+.+.... ...+.++ .|.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g---~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELG---YKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTT---CCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 368888889999999999999999999999999887654 8898877553210 2346777 565
Q ss_pred CccCCCCCHHHHHH
Q 004932 191 TTLIGSLTVREYLY 204 (723)
Q Consensus 191 ~~l~~~lTV~E~l~ 204 (723)
....|..++.+++.
T Consensus 172 ~~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 172 LNADPASVVFDAIK 185 (320)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 44444444445443
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.01 E-value=4.7e-06 Score=80.60 Aligned_cols=39 Identities=33% Similarity=0.175 Sum_probs=34.4
Q ss_pred cee--eceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC
Q 004932 124 KVV--KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (723)
Q Consensus 124 ~iL--~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~ 163 (723)
..+ +++++.+.+| +++|+||||||||||+++|.+++.+.
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 356 7889999999 99999999999999999999987653
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.99 E-value=3.2e-05 Score=83.16 Aligned_cols=142 Identities=15% Similarity=0.171 Sum_probs=77.1
Q ss_pred eecee-eEEeCCcEEEEECCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHH
Q 004932 126 VKSSN-GYALPGTMTVIMGPAKSGKSTLLRAIAGR--LPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (723)
Q Consensus 126 L~~vs-~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~--~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (723)
|+.+- +-+++|+++.|.||+|+|||||+..++.. .++.. | |. ...+.|+.-+..+ ...+.
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~---g-----g~-----~~~vlyi~~E~~~----~~~~l 173 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAG---G-----YP-----GGKIIFIDTENTF----RPDRL 173 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTT---T-----BC-----CCEEEEEESSSCC----CHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhccccc---C-----CC-----CCeEEEEECCCCC----CHHHH
Confidence 44433 56889999999999999999999998874 32210 0 00 1234455444322 12222
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHH-HHHHHHHHHHh----hCCcEEEEeCCCCC
Q 004932 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE-RRRVRIARELV----MRPHVLFIDEPLYH 277 (723)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGe-rqRv~IA~aL~----~~P~lLlLDEPTsg 277 (723)
......+... .+++++.+- ..+..++.+ .+.+..++.++ .+++++++|+.++-
T Consensus 174 ~~~~~~~g~~---------~~~~l~~l~-------------~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l 231 (343)
T 1v5w_A 174 RDIADRFNVD---------HDAVLDNVL-------------YARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMAL 231 (343)
T ss_dssp HHHHHHTTCC---------HHHHHHTEE-------------EEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGG
T ss_pred HHHHHHcCCC---------HHHHHhcee-------------EeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHH
Confidence 2111111110 111222110 011223332 34555566666 56899999999987
Q ss_pred CCHH------------HHHHHHHHHHHHHH-cCCEEEEEEeC
Q 004932 278 LDSV------------SALLMMVTLKKLAS-TGCTLLFTINQ 306 (723)
Q Consensus 278 LD~~------------~~~~i~~~L~~l~~-~g~tvi~t~h~ 306 (723)
++.. ...++++.|+++++ .+.+||++.|-
T Consensus 232 ~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 232 FRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp HHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 6432 13456666677764 57888875553
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.97 E-value=3.7e-06 Score=82.75 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=27.8
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC
Q 004932 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (723)
Q Consensus 132 ~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~ 163 (723)
++.+|++++|+||||||||||+++|+++..|+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 46789999999999999999999999998553
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=3.4e-05 Score=82.28 Aligned_cols=142 Identities=20% Similarity=0.246 Sum_probs=78.3
Q ss_pred eeecee-eEEeCCcEEEEECCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHH
Q 004932 125 VVKSSN-GYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (723)
Q Consensus 125 iL~~vs-~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~-~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (723)
.|+.+- +-+++|+++.|.||+|+|||||+..++... .+.. .| |. ...+.|+.-+..+ ...+.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~--~g-----g~-----~~~vlyi~~e~~~----~~~~l 158 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE--KG-----GL-----SGKAVYIDTEGTF----RWERI 158 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGG--GT-----CC-----SCEEEEEESSSCC----CHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccc--cC-----CC-----CCeEEEEECCCCC----CHHHH
Confidence 344433 578899999999999999999999888642 2210 01 10 1234454433322 11211
Q ss_pred HHHHHHhcCCCccchHHHHHHHHHHHcCCc--hHhhhhhcCCCCCCCCCHH-HHHHHHHHHHHh---hCCcEEEEeCCCC
Q 004932 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCG-ERRRVRIARELV---MRPHVLFIDEPLY 276 (723)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~ig~~~~~~~LSGG-erqRv~IA~aL~---~~P~lLlLDEPTs 276 (723)
... ++.+|+. +..++.. ..+..++. +.+.+..+++++ .+|+++++|+.++
T Consensus 159 ~~~--------------------~~~~g~~~~~~~~~l~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 159 ENM--------------------AKALGLDIDNVMNNIY----YIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHH--------------------HHHTTCCHHHHHHTEE----EEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHH--------------------HHHhCCCHHHHhccEE----EEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 111 1122221 1111110 11123333 335677778887 5799999999998
Q ss_pred CCCH--------H----HHHHHHHHHHHHHH-cCCEEEEEEeC
Q 004932 277 HLDS--------V----SALLMMVTLKKLAS-TGCTLLFTINQ 306 (723)
Q Consensus 277 gLD~--------~----~~~~i~~~L~~l~~-~g~tvi~t~h~ 306 (723)
-.+. . ...++++.|+++++ .+.+||++.|-
T Consensus 215 l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 215 HFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 6532 1 12455666666664 58888886553
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.95 E-value=3.3e-06 Score=83.25 Aligned_cols=39 Identities=23% Similarity=0.133 Sum_probs=24.8
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
...+++|||+.+.+|++++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 346889999999999999999999999999999999865
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=3.9e-06 Score=81.55 Aligned_cols=36 Identities=11% Similarity=0.186 Sum_probs=29.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i 172 (723)
+|++++|+||||||||||+++|++..++. ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeec
Confidence 69999999999999999999999987642 2355544
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.91 E-value=6.4e-05 Score=80.98 Aligned_cols=44 Identities=7% Similarity=-0.040 Sum_probs=35.4
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEEeCCh
Q 004932 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS---TGCTLLFTINQSS 308 (723)
Q Consensus 264 ~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~---~g~tvi~t~h~~~ 308 (723)
.+|.+|++||+... |......+.+.+.++.. .+.++|+++|.+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888877765 5778888888773
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=1.4e-06 Score=97.16 Aligned_cols=70 Identities=13% Similarity=0.216 Sum_probs=51.6
Q ss_pred hCCcEEEEeCCCCCCCH-HHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEE-EeCCeEEEEeChh
Q 004932 264 MRPHVLFIDEPLYHLDS-VSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICL-LSNGNTLFFGETL 333 (723)
Q Consensus 264 ~~P~lLlLDEPTsgLD~-~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~v-L~~G~iv~~G~~~ 333 (723)
.+|++||+||+..-.+. .++..+...+..+.+.|+.+|+++|.+..++..+.+++.- +..|.++..++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 48999999999887764 6788899999998888899999999875443333444332 4567777766653
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=3.8e-06 Score=83.02 Aligned_cols=80 Identities=18% Similarity=0.083 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHH-HHhcCCEEEEEeCCeEE
Q 004932 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE-VFGLFDRICLLSNGNTL 327 (723)
Q Consensus 249 SGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~-i~~~~D~v~vL~~G~iv 327 (723)
+.|+.+|..++..+..+|+.+..+ .+.++|.....+.+.++.. .+.++|+.+|...+. ....||.+++|+
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~----- 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD----- 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE-----
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE-----
Confidence 678889999998888888654332 3345555555554444332 355777766543221 256789888874
Q ss_pred EEeChhHHHHHh
Q 004932 328 FFGETLACLQHF 339 (723)
Q Consensus 328 ~~G~~~~~~~~f 339 (723)
.+++...+..
T Consensus 132 --~~~e~~~~Rl 141 (206)
T 1jjv_A 132 --VSPQTQLARS 141 (206)
T ss_dssp --CCHHHHHHHH
T ss_pred --CCHHHHHHHH
Confidence 3455555544
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=2.7e-06 Score=86.08 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=33.1
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 004932 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (723)
Q Consensus 132 ~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~ 176 (723)
..++|++++|.|+||||||||+++|+|+ . |+|.+.|++
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~---~----g~v~~~~~~ 53 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY---K----NDICLLTEP 53 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG---T----TTEEEECCT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc---c----CCeEEEecC
Confidence 3458999999999999999999999997 2 888888765
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.84 E-value=6.6e-08 Score=109.15 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=74.9
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC-----ceEEEEcCCCc-cCCCC
Q 004932 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY-----GSYGFVERETT-LIGSL 197 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~-----~~~~yv~Q~~~-l~~~l 197 (723)
.+++++++.+.+| +.|+||||+|||||+++|+|... .|.+.++|.+..... +.+..++|... ..|.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 5788899999999 99999999999999999999864 278888886532110 11233344321 22333
Q ss_pred CHHHHHHHHHHhcC---CCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 004932 198 TVREYLYYSALLQL---PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274 (723)
Q Consensus 198 TV~E~l~~~~~~~~---~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEP 274 (723)
.+.|++......+. ........+.+.+++ ..|||||+|+..|+++...+|++ |||+
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL-------------------~~Ldg~~~~~~viviAatn~p~~--LD~a 185 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------------VEMDGFEKDTAIVVMAATNRPDI--LDPA 185 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHH-------------------HHGGGCCSSCCCEEEECCSCGGG--SCTT
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHH-------------------HHhcccccCccEEEEEecCChhh--cCcc
Confidence 33333311000000 000001111222222 15788899998999999999987 7887
Q ss_pred CC
Q 004932 275 LY 276 (723)
Q Consensus 275 Ts 276 (723)
..
T Consensus 186 Ll 187 (499)
T 2dhr_A 186 LL 187 (499)
T ss_dssp TS
T ss_pred cc
Confidence 64
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.84 E-value=7.1e-05 Score=78.07 Aligned_cols=73 Identities=19% Similarity=0.217 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH----------HHHHHHHHHHHHHH----cCCEEEEEEeCCh---HHH
Q 004932 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSV----------SALLMMVTLKKLAS----TGCTLLFTINQSS---TEV 311 (723)
Q Consensus 249 SGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~----------~~~~i~~~L~~l~~----~g~tvi~t~h~~~---~~i 311 (723)
+++++.|..++.+...+|.+|++||+.+.++.. ....++..+..+.. .+..+|.+++.|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 356677777778888899999999998776532 22334444444321 2345566666542 234
Q ss_pred HhcCCEEEEE
Q 004932 312 FGLFDRICLL 321 (723)
Q Consensus 312 ~~~~D~v~vL 321 (723)
.+-|++++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 4456665444
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=2.6e-05 Score=84.35 Aligned_cols=57 Identities=9% Similarity=0.117 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC-EEEEEEeC
Q 004932 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGC-TLLFTINQ 306 (723)
Q Consensus 248 LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~-tvi~t~h~ 306 (723)
.++.++++..+++..+.+|+++++.-..+..|... ...+++++.+...|. ++++ .+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V-~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGV-LTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEE-EEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEE-EeC
Confidence 57789999999999999999877774334445443 455667777766564 5555 444
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.78 E-value=1.2e-05 Score=80.00 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=27.1
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 004932 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 47999999999999999999999999875
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.70 E-value=3.7e-06 Score=86.47 Aligned_cols=41 Identities=22% Similarity=0.339 Sum_probs=35.2
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHH---cCCCCCCCceeEEE--------ECCEeC
Q 004932 134 LPGTMTVIMGPAKSGKSTLLRAIA---GRLPHSARMYGEVF--------VNGAKS 177 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~---G~~~~~~~~~G~I~--------i~G~~~ 177 (723)
.+|++++|+|||||||||++++|+ |+..++ +|.|. .+|.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~ 76 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDI 76 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCc
Confidence 579999999999999999999999 887665 48887 777654
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.68 E-value=6.6e-06 Score=81.36 Aligned_cols=40 Identities=25% Similarity=0.201 Sum_probs=33.3
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 004932 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~ 175 (723)
.++|++++|+|+||||||||+++|++.+++.+ |.|.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~---~~v~~~~~ 58 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQG---ISVCVFHM 58 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTT---CCEEEEEG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC---CeEEEecc
Confidence 45799999999999999999999999876543 77766554
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.64 E-value=9.9e-06 Score=88.26 Aligned_cols=44 Identities=23% Similarity=0.168 Sum_probs=38.6
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 004932 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i 172 (723)
..+|+++++.+++|++++|+||||||||||+++|+|.. .|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 36899999999999999999999999999999999853 276654
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.63 E-value=1.7e-05 Score=78.57 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=25.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
+|++++|+||||||||||++.|++..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 799999999999999999999999865
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=1.4e-05 Score=76.67 Aligned_cols=34 Identities=32% Similarity=0.533 Sum_probs=29.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~ 175 (723)
+|++++|+|+||||||||+++|++.+ |.+.+++.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d 40 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGD 40 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCc
Confidence 69999999999999999999999864 56666653
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.62 E-value=1.4e-05 Score=90.78 Aligned_cols=155 Identities=10% Similarity=0.045 Sum_probs=83.5
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC-----------------------C------------CCcee
Q 004932 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH-----------------------S------------ARMYG 168 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~-----------------------~------------~~~~G 168 (723)
..++++++.+.+| +++|+|+|||||||||++|..+... . ..-.+
T Consensus 49 ~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r~~~~~g~~ 127 (517)
T 4ad8_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (517)
T ss_dssp TTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCC
T ss_pred cceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEEEEecCCCc
Confidence 4678899999999 9999999999999999999655210 0 00135
Q ss_pred EEEECCEeCCC------CCceEEEEcCCCccCCCCCHHHHHHHHHHhcC-CCccchHHHHHHHHHHHcC-CchHhhhhhc
Q 004932 169 EVFVNGAKSEM------PYGSYGFVERETTLIGSLTVREYLYYSALLQL-PGFFCQRKNVVEDAIHAMS-LSDYANKLIG 240 (723)
Q Consensus 169 ~I~i~G~~~~~------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-~~~~~~~~~~v~~~l~~lg-L~~~~~~~ig 240 (723)
++.+||++... ....+..++|++.+....+....-.+-..... ............++++.+. +.......
T Consensus 128 ~~~ing~~v~~~~l~~~~~~li~i~~q~~~~~l~~~~~rr~~LD~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 205 (517)
T 4ad8_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASQRER-- 205 (517)
T ss_dssp EEESSSSBCCHHHHHHHHTTTEEEESGGGGGTTTSHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred EEEECCEECCHHHHHHHhhhheEEeCCchHHhcCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHhHHHH--
Confidence 67777765431 11236778888766544333222211100000 0000001111222222221 11111111
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 004932 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300 (723)
Q Consensus 241 ~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tv 300 (723)
...++-.+.|...|+.+ .|.+.....+.+.+++|.+.+..+
T Consensus 206 ----~~~l~~l~~ql~ei~~~---------------~l~~~E~e~L~~~~~~L~~~~~~~ 246 (517)
T 4ad8_A 206 ----ARQIDLLAFQVQEISEV---------------SPDPGEEEGLNTELSRLSNLHESS 246 (517)
T ss_dssp ----HHHHHHHHHHHHHHHHH---------------CCCSSCHHHHHHHHHHHHHHC---
T ss_pred ----HHHHHHHHHHHHHHHhc---------------CCCCCcHHHHHHHHHHHHHHHHHH
Confidence 12567778888888876 344455677788888887666554
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.60 E-value=7.5e-06 Score=87.29 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=34.4
Q ss_pred ccceeeceeeEEeCCc------EEEEECCCCCcHHHHHHHHHcCCCC
Q 004932 122 SDKVVKSSNGYALPGT------MTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge------~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
.++.|++++..+..++ ++||+||||||||||+++|++++..
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3457777777777666 9999999999999999999998763
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=3.9e-05 Score=75.79 Aligned_cols=29 Identities=28% Similarity=0.316 Sum_probs=26.1
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 132 ~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+++|++++|+|+||||||||++.|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34579999999999999999999999975
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.56 E-value=3.3e-05 Score=81.48 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHHh--hCCcEEEEeCCCCCCCHHH-HHHHHHHHHHHHHc-CC--EEEEEEeCChHHHHhcCCEE
Q 004932 248 LPCGERRRVRIARELV--MRPHVLFIDEPLYHLDSVS-ALLMMVTLKKLAST-GC--TLLFTINQSSTEVFGLFDRI 318 (723)
Q Consensus 248 LSGGerqRv~IA~aL~--~~P~lLlLDEPTsgLD~~~-~~~i~~~L~~l~~~-g~--tvi~t~h~~~~~i~~~~D~v 318 (723)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++. |. .+.++.|+. ..+..++|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHH
Confidence 898886 5666676 68999999 7899876 67788888888753 43 333333332 3444444443
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00014 Score=76.43 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=25.6
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+.++..+.|.||+|+|||||+++|++..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 4678899999999999999999999865
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=2.8e-05 Score=91.03 Aligned_cols=43 Identities=26% Similarity=0.233 Sum_probs=31.6
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 004932 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~ 175 (723)
+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|.
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~ 46 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGT 46 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTC
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCc
Confidence 445689999999999999999999999765432 123766 4554
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.53 E-value=1.7e-05 Score=90.67 Aligned_cols=42 Identities=36% Similarity=0.433 Sum_probs=35.2
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee-EEE-ECCEe
Q 004932 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG-EVF-VNGAK 176 (723)
Q Consensus 132 ~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G-~I~-i~G~~ 176 (723)
.+++|++++|+|+||||||||+++|+|++.+.+ | +|. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~---G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMG---GRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTC---SSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccC---CceEEEECCcH
Confidence 467899999999999999999999999987753 5 674 77743
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0003 Score=78.21 Aligned_cols=170 Identities=17% Similarity=0.118 Sum_probs=95.6
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHHH
Q 004932 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (723)
..-|+.+.+-+.+|+++.|.|++|+|||||+..++....... | ..+.|+.- .++..+.
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~---g-------------~~vl~~sl------E~~~~~l 244 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE---G-------------VGVGIYSL------EMPAAQL 244 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT---C-------------CCEEEEES------SSCHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC---C-------------CeEEEEEC------CCCHHHH
Confidence 345777777789999999999999999999988886432210 1 11223221 1233332
Q ss_pred HHH--HHHhcCCCc------cc-hHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHh--hCCcEEEE
Q 004932 203 LYY--SALLQLPGF------FC-QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV--MRPHVLFI 271 (723)
Q Consensus 203 l~~--~~~~~~~~~------~~-~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~--~~P~lLlL 271 (723)
..- +.....+.. .. ....++.+.++.+.-.+. .+. ...++|..+- .+.++.+. .+|+++++
T Consensus 245 ~~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l---~i~---d~~~~s~~~l--~~~~~~l~~~~~~~lIvI 316 (444)
T 2q6t_A 245 TLRMMCSEARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPI---YID---DTPDLTLMEV--RARARRLVSQNQVGLIII 316 (444)
T ss_dssp HHHHHHHHTTCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCE---EEE---CCTTCBHHHH--HHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHcCCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCE---EEE---CCCCCCHHHH--HHHHHHHHHHcCCCEEEE
Confidence 211 111111110 00 122334444433321111 111 1235777665 34556665 47999999
Q ss_pred eCCCCCCCH----------HHHHHHHHHHHHHHH-cCCEEEEEEeCCh------------------HHHHhcCCEEEEEe
Q 004932 272 DEPLYHLDS----------VSALLMMVTLKKLAS-TGCTLLFTINQSS------------------TEVFGLFDRICLLS 322 (723)
Q Consensus 272 DEPTsgLD~----------~~~~~i~~~L~~l~~-~g~tvi~t~h~~~------------------~~i~~~~D~v~vL~ 322 (723)
|..+.-.+. .....+.+.|+.+++ .+.+||+++|-.. ..+.+.+|.|+.|.
T Consensus 317 D~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 317 DYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp ECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred cChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 998764432 123567788888875 5889988766321 03566789999885
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.52 E-value=3.3e-05 Score=73.73 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=24.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
.|++++|+|+||||||||+++|++++.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999999999764
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00011 Score=81.23 Aligned_cols=37 Identities=19% Similarity=0.103 Sum_probs=30.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G 174 (723)
++.+++++|++||||||++..|++.+...+ ++|.+-+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G---~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG---YKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEe
Confidence 588999999999999999999999876543 5665543
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0015 Score=70.48 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=28.1
Q ss_pred eeecee--eEEeCCcEEEEECCCCCcHHHHHHHHHcC
Q 004932 125 VVKSSN--GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 125 iL~~vs--~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-|+.+- +-+++|+++.|.|++|+|||||...++..
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344443 35789999999999999999999888754
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.40 E-value=4e-05 Score=82.23 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=24.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
++..+.|.||+|+|||||++.+++...
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999998754
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.38 E-value=2.3e-05 Score=79.40 Aligned_cols=67 Identities=10% Similarity=0.052 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCE
Q 004932 249 PCGERRRVRIARELVMRPHVLFIDEPLY-HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (723)
Q Consensus 249 SGGerqRv~IA~aL~~~P~lLlLDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (723)
+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+.....+-++++++.+.+.....++++.
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 456655553 33578899999999976 68877765555555554444467888877776665555543
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00021 Score=70.08 Aligned_cols=25 Identities=36% Similarity=0.388 Sum_probs=22.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
..+.|.||+|+|||||+++|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6799999999999999999998653
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0002 Score=75.85 Aligned_cols=47 Identities=6% Similarity=0.129 Sum_probs=36.6
Q ss_pred hhCCcEEEEeCCCCC-CCHHHHHHHHHHHHHHHHcCCEEEEEEeCChH
Q 004932 263 VMRPHVLFIDEPLYH-LDSVSALLMMVTLKKLASTGCTLLFTINQSST 309 (723)
Q Consensus 263 ~~~P~lLlLDEPTsg-LD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~ 309 (723)
..+|++||+||+-.- .|...+..+...+..+.+.|..+|++++.+..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 143 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChH
Confidence 356999999998652 34478888999999888888888888876643
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00072 Score=68.92 Aligned_cols=23 Identities=39% Similarity=0.729 Sum_probs=21.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
+.|.||+|+|||||+++|++...
T Consensus 48 vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHcC
Confidence 88999999999999999998753
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00012 Score=69.07 Aligned_cols=30 Identities=37% Similarity=0.413 Sum_probs=24.1
Q ss_pred ceeeEEeCCcEEEEECCCCCcHHHHHHHHHc
Q 004932 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 128 ~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
+.++.+.+| +++|+|||||||||++++|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 344455554 999999999999999999873
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0001 Score=81.50 Aligned_cols=33 Identities=33% Similarity=0.297 Sum_probs=28.6
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCC
Q 004932 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~ 163 (723)
+.+.+|++++|+|||||||||||++|+++..+.
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 345679999999999999999999999988664
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.24 E-value=3.2e-05 Score=83.15 Aligned_cols=50 Identities=22% Similarity=0.174 Sum_probs=41.9
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 004932 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~ 175 (723)
..+++++++.+.+|.+++|+|++|+|||||++.|+|.+.+.+ |+|.+-+.
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~---~~v~v~~~ 92 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREG---LKVAVIAV 92 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEE
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcC---CeEEEEee
Confidence 468889999999999999999999999999999999876543 66665444
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=7.9e-05 Score=71.77 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=30.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG--EVFVNGA 175 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G--~I~i~G~ 175 (723)
+|++++|+|++||||||+++.|++.+++. | .|.++|.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~----g~~~i~~d~~ 42 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCH----GIPCYTLDGD 42 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT----TCCEEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhC----CCcEEEECCh
Confidence 79999999999999999999999976542 4 5555553
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00015 Score=73.28 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=27.1
Q ss_pred eeceeeEEe---CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 004932 126 VKSSNGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 126 L~~vs~~v~---~Ge~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
|.++++.+. +|.+++|.|++||||||+++.|+..+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 344444444 7999999999999999999999998765
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0027 Score=63.97 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
.++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 4899999999999999999997654
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0011 Score=73.69 Aligned_cols=36 Identities=11% Similarity=0.010 Sum_probs=29.9
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC
Q 004932 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.-|+.+.+-+.+|+++.|.|++|+|||||+--++..
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 456666666889999999999999999998777653
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0019 Score=68.29 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=28.2
Q ss_pred eeecee-eEEeCCcEEEEECCCCCcHHHHHHHHHc
Q 004932 125 VVKSSN-GYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 125 iL~~vs-~~v~~Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
.|+.+- +-+++|+++.|.|++|+|||||+..++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344443 5688999999999999999999988875
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.01 E-value=9.7e-05 Score=80.00 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=45.2
Q ss_pred eEEEEeEEEEEecccccccceee--------------ceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVK--------------SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~--------------~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+.|+|++..|+. .+..|+ |+.+.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~----er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHAN----SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCC----SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCC----CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4678999988853 345788 899999999999999999999999999999864
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00015 Score=78.08 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=32.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~ 176 (723)
++.+++|+|++|||||||+|.|+|.+.+.. |+|.+.+.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~---~~v~V~~~d 111 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERG---HKLSVLAVD 111 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEECC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcC---CeEEEEeec
Confidence 588999999999999999999999876553 777665543
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00034 Score=69.65 Aligned_cols=25 Identities=40% Similarity=0.610 Sum_probs=23.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+.+++|+|||||||||++++|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999865
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00087 Score=63.90 Aligned_cols=26 Identities=50% Similarity=0.718 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+|..++|+|++|+|||||++.|+|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999999964
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00013 Score=83.24 Aligned_cols=47 Identities=23% Similarity=0.412 Sum_probs=39.3
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 004932 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G 174 (723)
.+++++++.+ +|+.++|+||||+|||||+++|++...+. .|+|.++|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 4677777777 89999999999999999999999987654 37776655
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00032 Score=69.18 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=25.5
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
.+|.+++|+||||||||||.+.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4799999999999999999999998764
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0011 Score=66.82 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=43.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEe---------CChHHHHhcCCEEEEEe
Q 004932 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN---------QSSTEVFGLFDRICLLS 322 (723)
Q Consensus 265 ~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h---------~~~~~i~~~~D~v~vL~ 322 (723)
+|+++++||.-- |+. .+++.++.+++.|..||++-| .++..+..++|+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 654 356667777777999999998 67788899999999875
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00018 Score=71.40 Aligned_cols=40 Identities=25% Similarity=0.275 Sum_probs=32.5
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 004932 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG--EVFVNGA 175 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G--~I~i~G~ 175 (723)
+.+|.+++|+|++||||||+.+.|++.+.+. .| .+.++|.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d 63 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGD 63 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECCh
Confidence 3479999999999999999999999987643 26 6777653
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0018 Score=66.71 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=23.9
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++.-+.|.||+|+|||||+++|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 356779999999999999999999865
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0014 Score=65.04 Aligned_cols=45 Identities=11% Similarity=0.074 Sum_probs=31.8
Q ss_pred hCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCE-EEEEEeCCh
Q 004932 264 MRPHVLFIDEPLYHL-DSVSALLMMVTLKKLASTGCT-LLFTINQSS 308 (723)
Q Consensus 264 ~~P~lLlLDEPTsgL-D~~~~~~i~~~L~~l~~~g~t-vi~t~h~~~ 308 (723)
.+|.+|++||.-.-- +...+..+.+.+..+.+.+.. +|++++.+.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 468999999965432 233477788888888777765 777776543
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00062 Score=67.43 Aligned_cols=30 Identities=33% Similarity=0.328 Sum_probs=23.9
Q ss_pred ceeeEEeCCcEEEEECCCCCcHHHHHHHHHc
Q 004932 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 128 ~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
+.++.+.+ .+++|+|||||||||++++|.-
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHH
Confidence 34445555 4999999999999999998864
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.015 Score=62.88 Aligned_cols=27 Identities=41% Similarity=0.512 Sum_probs=24.4
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHc
Q 004932 132 YALPGTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 132 ~v~~Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
-+.+|+++.|.|++|+|||||+..++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 578999999999999999999977764
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00064 Score=65.87 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=26.0
Q ss_pred ceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC
Q 004932 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 128 ~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45677778999999999999999999999975
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00057 Score=66.23 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=29.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~ 175 (723)
.+++|+|+||||||||++.|.+.++..+..-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 589999999999999999999876433222467766553
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0029 Score=65.91 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=24.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
...+.|.||+|+|||||+++|++....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 468999999999999999999997654
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0015 Score=63.28 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=21.0
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC
Q 004932 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4677888777776 6799999999999999999984
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0055 Score=65.87 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=23.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+..-+.|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999999764
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0016 Score=72.26 Aligned_cols=39 Identities=36% Similarity=0.525 Sum_probs=30.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC------C---CCceeEEEECCEe
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRLPH------S---ARMYGEVFVNGAK 176 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~~------~---~~~~G~I~i~G~~ 176 (723)
.++|+|+||+|||||+|.|+|.... + ....|.+.++|++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 7999999999999999999997531 0 0235889999875
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0005 Score=66.50 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=26.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 004932 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
.+|.+++|+|++||||||+.+.|++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 37999999999999999999999998754
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00075 Score=66.14 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 004932 138 MTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G 158 (723)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999999
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00054 Score=75.61 Aligned_cols=45 Identities=16% Similarity=0.081 Sum_probs=38.0
Q ss_pred eceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 004932 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (723)
Q Consensus 127 ~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~ 176 (723)
+++++. +|++++++|+|||||||++..|++.+.+.+ |+|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g---~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKG---RRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEeecc
Confidence 567777 899999999999999999999999987654 788776654
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.013 Score=66.05 Aligned_cols=35 Identities=17% Similarity=0.054 Sum_probs=28.3
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHc
Q 004932 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
.-|+.+.+-+.+|+++.|.|++|+|||||+--++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 34555555588999999999999999999877664
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00063 Score=66.49 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=31.1
Q ss_pred cceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC
Q 004932 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
..+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 357888888887775 789999999999999999874
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00059 Score=69.82 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=31.7
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 004932 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (723)
Q Consensus 132 ~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~ 175 (723)
...++.++.|+|+|||||||+.+.|+..+.. |.+.++|.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D 66 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGD 66 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecH
Confidence 4557899999999999999999999987642 45667764
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00039 Score=74.69 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=33.8
Q ss_pred ceeeceeeEEeCCcE--EEEECCCCCcHHHHHHHHHcCC
Q 004932 124 KVVKSSNGYALPGTM--TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~--~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 578888888999998 9999999999999999999865
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0081 Score=60.78 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+..-+.|.||+|+|||||+++|+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44568899999999999999999854
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0016 Score=68.84 Aligned_cols=52 Identities=19% Similarity=0.040 Sum_probs=31.0
Q ss_pred hhCCcEEEEeCCC-CCCCHHHHHHHHH-HHHHHHHcCCEEEEEEeCChHHHHhc
Q 004932 263 VMRPHVLFIDEPL-YHLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVFGL 314 (723)
Q Consensus 263 ~~~P~lLlLDEPT-sgLD~~~~~~i~~-~L~~l~~~g~tvi~t~h~~~~~i~~~ 314 (723)
+.++++||+||.- ..++...+..++. +|.....+++.+|+|++.+..+....
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~ 265 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERK 265 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHTT
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHH
Confidence 4578999999983 2344444444544 55554445677888888887666544
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0029 Score=67.65 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+..+.|.||+|+|||||++.++...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999765
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0013 Score=64.47 Aligned_cols=25 Identities=40% Similarity=0.405 Sum_probs=22.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
..+++|+|++|||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999864
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.02 Score=60.62 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=23.9
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+..-+.|.||+|+|||||+++++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 356779999999999999999999865
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0016 Score=62.56 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
+|.+++|+|++||||||+.+.|+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999864
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.33 E-value=0.00045 Score=72.72 Aligned_cols=44 Identities=18% Similarity=0.112 Sum_probs=35.5
Q ss_pred eeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 004932 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (723)
Q Consensus 129 vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~ 176 (723)
+++..+ |++++++|++|+||||++..|++.+.+.+ |+|.+.+.+
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g---~~v~l~~~D 135 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKG---FKVGLVGAD 135 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTT---CCEEEEECC
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEecC
Confidence 666655 99999999999999999999999876543 677765543
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0021 Score=61.32 Aligned_cols=26 Identities=31% Similarity=0.599 Sum_probs=23.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999998764
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0019 Score=60.82 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
.++|+|++|+|||||++.|+|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999643
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0018 Score=70.65 Aligned_cols=45 Identities=20% Similarity=0.122 Sum_probs=31.7
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHcCCC-----CC---CCceeEEEECCE
Q 004932 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-----HS---ARMYGEVFVNGA 175 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~-----~~---~~~~G~I~i~G~ 175 (723)
+.+..|..++|+|+||+|||||+++|+|... |. ....|.+.+.|.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3455788999999999999999999999721 00 112477777663
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.002 Score=60.71 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.00069 Score=72.24 Aligned_cols=40 Identities=20% Similarity=0.449 Sum_probs=34.6
Q ss_pred cceeeceeeEEeCCcE--EEEECCCCCcHHHHHHHHHcCCCC
Q 004932 123 DKVVKSSNGYALPGTM--TVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 123 ~~iL~~vs~~v~~Ge~--~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
..+++.++..++.|++ +.+.||+|+|||||++++++.+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3577778888888988 999999999999999999997644
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0036 Score=67.72 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=25.7
Q ss_pred eeceeeEEeCCcEEEEECCCCCcHHHHHHHHH
Q 004932 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA 157 (723)
Q Consensus 126 L~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~ 157 (723)
+++..+.+.+| +++|.|+|||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 35556666664 99999999999999999986
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0026 Score=64.14 Aligned_cols=27 Identities=41% Similarity=0.530 Sum_probs=24.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+|.+++|+|++||||||+.+.|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999999843
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0033 Score=60.32 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998754
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0031 Score=63.96 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999654
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0029 Score=60.71 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999964
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.025 Score=59.81 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=21.4
Q ss_pred eEEeCCcEEEEECCCCCcHHHHH-HHHHc
Q 004932 131 GYALPGTMTVIMGPAKSGKSTLL-RAIAG 158 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL-~~L~G 158 (723)
+=+.+| ++.|.||+|+|||||+ .+++.
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 446689 9999999999999994 44443
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0034 Score=59.89 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0033 Score=64.31 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+++|+||||||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999864
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0038 Score=60.07 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999998643
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0038 Score=65.17 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=28.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G 174 (723)
.|.++.|.||||||||||.+.|+...+. |.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~-----~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQG-----NVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTT-----CCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEec
Confidence 5789999999999999999999876532 4566665
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0044 Score=59.46 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998654
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0041 Score=58.34 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 004932 138 MTVIMGPAKSGKSTLLRAI 156 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L 156 (723)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.064 Score=68.22 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=28.4
Q ss_pred eeecee--eEEeCCcEEEEECCCCCcHHHHHHHHHcC
Q 004932 125 VVKSSN--GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 125 iL~~vs--~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-|+.+- +=+.+|+++.|.||+|+|||||+-.++..
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 455554 35889999999999999999998777653
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0029 Score=68.30 Aligned_cols=47 Identities=21% Similarity=0.160 Sum_probs=33.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
.+.++|++..+ .++.+++++++.| +|+|++|+|||||++.|.|....
T Consensus 17 ~v~~~~l~~~~-----~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~ 63 (361)
T 2qag_A 17 YVGFANLPNQV-----HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY 63 (361)
T ss_dssp ----CCHHHHH-----HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-
T ss_pred eEEeccchHHh-----CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCC
Confidence 36677776544 2456788888876 99999999999999999887543
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0026 Score=64.10 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=46.1
Q ss_pred HHHhhCCcEEEEeCCCCC-CCHHHHHHHHHHHHHHHHcCCEEEEEEeCC-h--------------------HHHHhcCCE
Q 004932 260 RELVMRPHVLFIDEPLYH-LDSVSALLMMVTLKKLASTGCTLLFTINQS-S--------------------TEVFGLFDR 317 (723)
Q Consensus 260 ~aL~~~P~lLlLDEPTsg-LD~~~~~~i~~~L~~l~~~g~tvi~t~h~~-~--------------------~~i~~~~D~ 317 (723)
.+|..+|+++++||+-.- .+........+.+..+...|..++.|+|-- . +.+++.||.
T Consensus 79 ~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~ 158 (228)
T 2r8r_A 79 ALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFD 158 (228)
T ss_dssp HHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSE
T ss_pred HHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCe
Confidence 334568999999997642 343222333444444556788888888711 1 235566777
Q ss_pred EEEEeCCeEEEEeChhHHHHHhhh
Q 004932 318 ICLLSNGNTLFFGETLACLQHFSN 341 (723)
Q Consensus 318 v~vL~~G~iv~~G~~~~~~~~f~~ 341 (723)
|.+++ -+|+++.+.+.+
T Consensus 159 v~lvD-------~~p~~l~~rl~~ 175 (228)
T 2r8r_A 159 LVLID-------LPPRELLERLRD 175 (228)
T ss_dssp EEEBC-------CCHHHHHHHHHT
T ss_pred EEEec-------CCHHHHHHHHHC
Confidence 76653 467777776654
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0038 Score=61.06 Aligned_cols=24 Identities=46% Similarity=0.729 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
.+.|+||||||||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 478999999999999999987654
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0054 Score=59.67 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.005 Score=60.93 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=21.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
+-+++|.|++||||||+++.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999997
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0046 Score=59.15 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.+..+.|.|++||||||+.+.|+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 5778999999999999999999854
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.005 Score=59.67 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999864
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0059 Score=59.59 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 477899999999999999999998654
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.006 Score=57.88 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G 158 (723)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0058 Score=58.25 Aligned_cols=23 Identities=52% Similarity=0.573 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999754
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.11 Score=65.98 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=26.5
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 132 ~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-+.+|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 58999999999999999999999998754
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0063 Score=59.58 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+|.+++|.|++||||||+.+.|+..+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998653
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.015 Score=65.25 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=23.9
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+.+..-+.|.||+|+|||+|+++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3456679999999999999999998754
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.038 Score=59.24 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=23.0
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+..-+.|.||+|+|||||+++|+...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 345568899999999999999999854
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0064 Score=58.98 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 458999999999999999999975
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0063 Score=58.70 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++.+++|+|++||||||+.+.|+..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 57799999999999999999998643
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0049 Score=59.34 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=22.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCC
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
.+++|+|++|||||||++.|++.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37999999999999999999987543
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0031 Score=61.90 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0075 Score=59.08 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998654
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0082 Score=57.62 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
+.+++|.|++||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999864
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0074 Score=57.84 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
++.|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987653
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.074 Score=58.71 Aligned_cols=28 Identities=29% Similarity=0.542 Sum_probs=23.7
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+.|-.=+.|.||+|+|||+|.++||+..
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3455568899999999999999999864
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0079 Score=61.89 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.11 Score=66.97 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=28.5
Q ss_pred eeecee--eEEeCCcEEEEECCCCCcHHHHHHHHHcC
Q 004932 125 VVKSSN--GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 125 iL~~vs--~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-|+.+- +=+.+|+++.|.||+|+|||||+..++..
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~ 406 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 455544 35889999999999999999998877754
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.076 Score=58.50 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=23.0
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+..=+.+.||+|+|||+|.++||+..
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344558999999999999999999864
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.011 Score=58.47 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+|-.+.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 57789999999999999999998753
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0099 Score=57.85 Aligned_cols=23 Identities=43% Similarity=0.699 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999854
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.01 Score=57.25 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 357799999999999999999998753
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.023 Score=54.43 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3889999999999999766654
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.029 Score=54.90 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=42.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEe---------CChHHHHhcCCEEEEEe
Q 004932 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN---------QSSTEVFGLFDRICLLS 322 (723)
Q Consensus 265 ~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h---------~~~~~i~~~~D~v~vL~ 322 (723)
+.+++++||.-- +|+. +++.++.+++.|..||++-+ .++.++.+++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999544 6643 36678888878999999888 67788999999998774
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.079 Score=58.20 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=23.1
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++-.=+.|.||+|+|||+|.++||+..
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHh
Confidence 344559999999999999999999864
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.0085 Score=57.15 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=18.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.12 Score=55.88 Aligned_cols=26 Identities=31% Similarity=0.597 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++.-+.|.||+|+|||+|+++|+...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 56789999999999999999998764
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.02 E-value=0.016 Score=61.11 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=29.8
Q ss_pred ceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcC
Q 004932 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 124 ~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
..+|+....+ .|.-++|+|+||+|||||...|.++
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 4667766655 7899999999999999999999885
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.0075 Score=65.53 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=37.3
Q ss_pred CCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCEEEEEEeCChH
Q 004932 265 RPHVLFIDEPLYHLD---SVSALLMMVTLKKLASTGCTLLFTINQSST 309 (723)
Q Consensus 265 ~P~lLlLDEPTsgLD---~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~ 309 (723)
.|.++++||.=.=++ +..+..+.+.+++.++.|..+++++|.|.+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 578999999988884 677888888888888889888888887753
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.011 Score=56.69 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.|.+..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.011 Score=54.73 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999854
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.013 Score=54.83 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 48999999999999999999864
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.087 Score=57.45 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+-.=+.+.||+|+|||+|.+++|+..
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 33348899999999999999999864
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.066 Score=53.34 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=43.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEe---------CChHHHHhcCCEEEEEe
Q 004932 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN---------QSSTEVFGLFDRICLLS 322 (723)
Q Consensus 265 ~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h---------~~~~~i~~~~D~v~vL~ 322 (723)
+.+++++||.-- +|.. +++.|+.+++.|+.||++-+ .++..+..+||.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999876 6643 33777887878999999999 78889999999999875
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.92 E-value=0.013 Score=54.42 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999999853
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.013 Score=58.44 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++.+++|.|++||||||+.+.|+..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998643
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.014 Score=54.99 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
=++++|.|+.||||||+.+.|+..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998743
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=94.89 E-value=0.015 Score=56.57 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+-+++|+|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999998643
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.013 Score=57.55 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.011 Score=54.96 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37999999999999999998864
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.019 Score=59.44 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.013 Score=54.05 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.013 Score=54.08 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999754
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.014 Score=55.88 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.013 Score=53.88 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=94.82 E-value=0.012 Score=54.11 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998864
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.013 Score=55.33 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998753
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.015 Score=54.19 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998754
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=94.75 E-value=0.022 Score=61.36 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
|-.++|+|.+|+|||||++.|+|.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999994
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.013 Score=56.14 Aligned_cols=24 Identities=42% Similarity=0.519 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998753
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.014 Score=54.11 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999875
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.015 Score=54.17 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999763
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.014 Score=54.88 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999864
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.017 Score=56.29 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=21.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998643
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.017 Score=54.27 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998743
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.70 E-value=0.015 Score=53.95 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999998764
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.016 Score=57.07 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999997643
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.015 Score=53.80 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998753
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.015 Score=54.49 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999999754
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.015 Score=54.55 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998854
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=94.65 E-value=0.014 Score=54.20 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37999999999999999999864
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=94.65 E-value=0.014 Score=57.94 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998653
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.017 Score=55.32 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
+.+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.014 Score=55.80 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.015 Score=55.73 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.022 Score=53.50 Aligned_cols=26 Identities=38% Similarity=0.475 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+.-.++|+|++|+|||||++.+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34578999999999999999999853
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.015 Score=54.53 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999863
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.1 Score=52.53 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=44.9
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeC---------ChHHHHhcCCEEEEEe
Q 004932 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ---------SSTEVFGLFDRICLLS 322 (723)
Q Consensus 264 ~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~---------~~~~i~~~~D~v~vL~ 322 (723)
.+.+++++||.---.| +.++++.+++.|+.||++-+. ++..+..+||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999987754 666677777789999999999 8889999999999874
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.02 Score=58.59 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998753
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=94.49 E-value=0.016 Score=55.27 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999864
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.021 Score=57.82 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++-.++|.||+||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999854
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.25 Score=54.48 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=24.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
++.+++++|++|+||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999976543
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.019 Score=58.30 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.018 Score=53.32 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999974
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.018 Score=54.99 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999864
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.027 Score=55.52 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.|..++|+||+|+|||||...|+.+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999999998753
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.018 Score=54.49 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 38999999999999999999854
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.02 Score=56.01 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
..+++|.|++||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999864
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.021 Score=53.66 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 48999999999999999999753
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.031 Score=59.54 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++.++.|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 46789999999999999999999865
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.40 E-value=0.017 Score=54.86 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 7899999999999999999864
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.019 Score=53.39 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.019 Score=54.47 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999753
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.019 Score=54.96 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999999854
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.021 Score=54.48 Aligned_cols=25 Identities=40% Similarity=0.586 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
-++|+|++|+|||||++.|.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 4899999999999999999997643
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=94.33 E-value=0.02 Score=52.94 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999864
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.23 E-value=0.021 Score=53.63 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998854
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.02 Score=53.64 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.022 Score=53.78 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999999754
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.022 Score=53.30 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999999864
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=94.17 E-value=0.024 Score=59.52 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|.+|+|||||++.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 59999999999999999999863
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.16 E-value=0.014 Score=55.16 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44699999999999999999875
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.023 Score=54.24 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++++|++|+|||||++.|++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48899999999999999999864
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=0.019 Score=59.08 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||+|.|.|..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998754
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=94.12 E-value=0.024 Score=53.39 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999864
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.027 Score=56.04 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998643
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.024 Score=58.75 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
..+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999984
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.00 E-value=0.032 Score=52.59 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+..+.|.||+|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998764
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.00 E-value=0.025 Score=55.43 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.025 Score=54.53 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998754
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.023 Score=58.07 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|.+|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999973
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=93.98 E-value=0.014 Score=60.96 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=19.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++-+++|.|++||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35589999999999999999998743
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=93.98 E-value=0.027 Score=55.72 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+|-.+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999998654
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.023 Score=53.77 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.027 Score=59.16 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999964
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.026 Score=54.55 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999864
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.026 Score=53.90 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999999864
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=93.91 E-value=0.027 Score=53.51 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=21.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.=.++|+|++|+|||||++.+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999999754
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.027 Score=53.85 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999999854
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.022 Score=55.28 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999764
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.88 E-value=0.025 Score=54.17 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 58999999999999999999843
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=93.86 E-value=0.026 Score=57.26 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=93.86 E-value=0.025 Score=61.12 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++|+|++|+|||||++.|+|..
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999863
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.028 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999999753
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=93.82 E-value=0.029 Score=52.95 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.81 E-value=0.026 Score=54.18 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999999864
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.026 Score=53.70 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999853
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.77 E-value=0.031 Score=53.94 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999864
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.03 Score=53.42 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998753
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=93.72 E-value=0.033 Score=57.81 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++.|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999863
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.031 Score=55.08 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998643
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.029 Score=53.93 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++|+|++|+|||||++.|.+..
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998753
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.038 Score=55.28 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+..+.|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998653
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.03 Score=54.95 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998753
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.38 Score=62.12 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=31.5
Q ss_pred cceeecee--eEEeCCcEEEEECCCCCcHHHHHHHHHc
Q 004932 123 DKVVKSSN--GYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 123 ~~iL~~vs--~~v~~Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
...|+++. +-+++|+.+.|.||+|+|||||...+.-
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ 1103 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 1103 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45678888 5899999999999999999999998763
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=93.67 E-value=0.032 Score=57.05 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999854
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.66 E-value=0.017 Score=56.69 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999874
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.029 Score=54.35 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 48999999999999999999864
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.038 Score=55.25 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
...++.|+||+||||+|..+.|+-.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998643
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=93.63 E-value=0.039 Score=54.92 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=25.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
+|.+++|.|++||||||+++.|+..+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999876643
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=93.63 E-value=0.032 Score=53.90 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999973
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=93.62 E-value=0.033 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=93.60 E-value=0.033 Score=53.36 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++|+|++|+|||||++.+.+..
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999854
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=93.60 E-value=0.03 Score=52.81 Aligned_cols=22 Identities=27% Similarity=0.301 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999854
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.012 Score=57.67 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
..+.|.||+|+|||||++.++...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999999998754
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=0.031 Score=57.64 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|.+|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.57 E-value=0.03 Score=53.61 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 38999999999999999999854
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.033 Score=54.00 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 38999999999999999998753
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=93.54 E-value=0.031 Score=58.33 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|+.|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999974
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.54 E-value=0.033 Score=53.04 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
=.++|+|++|+|||||++.+.+.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999964
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.034 Score=53.17 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999999753
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.52 E-value=0.034 Score=52.92 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999999864
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.033 Score=53.29 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998854
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.51 E-value=0.035 Score=53.40 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999853
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.034 Score=55.19 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++|+|++|+|||||++.|.|.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.054 Score=52.21 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.|.-++|.|+||+|||||...|..+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 5889999999999999999988763
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.026 Score=53.96 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998864
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.037 Score=60.77 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=23.1
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcC
Q 004932 134 LPGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
...+++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999999999999999864
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=0.031 Score=54.12 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999854
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.037 Score=59.11 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=21.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+++|+||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 379999999999999999999865
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=93.47 E-value=0.035 Score=53.21 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999864
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.47 E-value=0.035 Score=53.87 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999754
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.45 E-value=0.036 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999999864
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.039 Score=53.90 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999999854
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.032 Score=56.14 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=21.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999987653
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.031 Score=53.02 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999975
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.40 E-value=0.033 Score=54.38 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 38999999999999999988753
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=93.36 E-value=0.04 Score=53.12 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
-++|+|++|+|||||++.+.|...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 489999999999999999998654
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=93.33 E-value=0.042 Score=55.61 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=24.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
+|.+++|.|++||||||+++.|+..+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5889999999999999999999886643
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=93.33 E-value=0.049 Score=57.50 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+.+++|+||+|||||||...|+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999999765
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=93.30 E-value=0.032 Score=54.91 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999999854
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.039 Score=51.97 Aligned_cols=27 Identities=15% Similarity=0.396 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
.+..+.|.||+|+|||||++.++....
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999987653
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=93.28 E-value=0.031 Score=52.54 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.27 E-value=0.036 Score=53.92 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999854
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.043 Score=52.83 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=93.22 E-value=0.038 Score=58.60 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=22.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999999865
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.20 E-value=0.042 Score=52.60 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 48999999999999999988753
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=93.15 E-value=0.037 Score=57.15 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999974
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.13 E-value=0.042 Score=53.89 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999974
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=93.10 E-value=0.043 Score=53.49 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.09 E-value=0.04 Score=53.95 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999864
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=93.09 E-value=0.086 Score=63.26 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
..+.|.||+|+|||+|.+.|+....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999998764
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=93.04 E-value=0.053 Score=60.29 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=28.2
Q ss_pred eeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 125 iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+++.+ ..+-+|+.++|+|+||+|||||++.|++..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 44444 344579999999999999999999998754
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=93.03 E-value=0.03 Score=52.97 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=9.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998653
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=92.98 E-value=0.053 Score=53.96 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
+|.++.+.|++||||||+++.|+..+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4889999999999999999999886643
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=0.052 Score=53.70 Aligned_cols=22 Identities=32% Similarity=0.598 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++.|+||+||||+|..+.|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999864
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=92.95 E-value=0.045 Score=55.88 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999864
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=92.95 E-value=0.043 Score=53.14 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38899999999999999999854
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=92.94 E-value=0.041 Score=52.99 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
=-++|+|++|+|||||++.+.+.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999999764
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=92.94 E-value=0.053 Score=54.47 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
|.+++|-|+.||||||+.+.|+..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999998663
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=92.94 E-value=0.054 Score=54.08 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=25.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
+|.++.+.|++||||||+.+.|+..+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 6899999999999999999999987653
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=92.89 E-value=0.06 Score=54.03 Aligned_cols=27 Identities=26% Similarity=0.243 Sum_probs=24.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 588999999999999999999987654
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=92.78 E-value=0.038 Score=56.41 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++.+++|.|+.||||||+.+.|+..+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999999998765
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.78 E-value=0.07 Score=53.11 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=39.8
Q ss_pred hhCCcEEEEeCCCC----CCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCChH---------HHHhcCCEEEEEe
Q 004932 263 VMRPHVLFIDEPLY----HLDSVSALLMMVTLKKLA-STGCTLLFTINQSST---------EVFGLFDRICLLS 322 (723)
Q Consensus 263 ~~~P~lLlLDEPTs----gLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~---------~i~~~~D~v~vL~ 322 (723)
-.+|+++++|--+. .-|.....+++..|+.++ +.|.+++++.|.... .+...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 35889999996432 114455667777788877 458999998765422 1345789888874
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.048 Score=55.87 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++++|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.74 E-value=0.049 Score=52.11 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999753
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=92.68 E-value=0.024 Score=59.83 Aligned_cols=42 Identities=10% Similarity=0.126 Sum_probs=30.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 004932 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (723)
Q Consensus 265 ~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (723)
+++++++|| ...|+...+..+.+.+.+... ...+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 788999888888888776543 334555566654
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.63 E-value=0.06 Score=53.30 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++|+|.+|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999974
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=92.51 E-value=0.028 Score=55.00 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998653
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=92.50 E-value=0.057 Score=53.15 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-.++|+|.+|+|||||++.+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998753
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=92.43 E-value=0.07 Score=54.78 Aligned_cols=25 Identities=28% Similarity=0.581 Sum_probs=22.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
-.++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4799999999999999999999754
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.41 E-value=0.062 Score=52.98 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999864
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.35 E-value=0.058 Score=52.29 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 38999999999999999998754
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=92.34 E-value=0.076 Score=55.89 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
..+++|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4589999999999999999999764
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=92.28 E-value=0.03 Score=53.97 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=4.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=92.27 E-value=0.042 Score=52.36 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHcC
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
=-++|+|++|+|||||++.+.+.
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999653
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=92.20 E-value=0.025 Score=57.56 Aligned_cols=22 Identities=36% Similarity=0.762 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+.|.||+|+|||||+++|++..
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7899999999999999999854
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=92.19 E-value=0.059 Score=59.81 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++|+|.+|+|||||++.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6999999999999999999884
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=92.09 E-value=0.064 Score=52.13 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++|+|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=92.04 E-value=0.075 Score=57.94 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
..+++|+||+|||||||.+.|+...
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3478999999999999999998754
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=91.99 E-value=0.073 Score=52.27 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=91.92 E-value=0.069 Score=51.89 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.+.+..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.81 E-value=0.084 Score=48.65 Aligned_cols=44 Identities=16% Similarity=0.118 Sum_probs=30.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHH
Q 004932 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310 (723)
Q Consensus 265 ~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~ 310 (723)
+..+|++||.- .|++..+..+.+.|... ..+..+|++++.+..+
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~~ 119 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLVE 119 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHHH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHHH
Confidence 34689999984 68888888888887322 2345677777776543
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=91.43 E-value=0.097 Score=52.73 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-+||+|++||||||+.+.|+..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998643
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=91.30 E-value=0.11 Score=53.89 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++..+.|.||+|+|||||++.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 56679999999999999999998765
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=91.29 E-value=0.11 Score=50.18 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=38.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeC---------ChHHHHhcCCEEEEEe
Q 004932 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ---------SSTEVFGLFDRICLLS 322 (723)
Q Consensus 265 ~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~---------~~~~i~~~~D~v~vL~ 322 (723)
+++++++||.-- +|+ .+++.|+.++++|..|+++-+. +...+..++|.|.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999754 543 3667778888779999998872 3345666788886654
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=91.22 E-value=0.12 Score=54.72 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=25.8
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHcC
Q 004932 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
+-+.+|.++.|.||+|+|||||...++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 56778999999999999999999998853
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=91.10 E-value=0.11 Score=50.08 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+.|.||+|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998754
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=90.84 E-value=0.33 Score=54.24 Aligned_cols=71 Identities=21% Similarity=0.220 Sum_probs=51.3
Q ss_pred CCCCCHHHHHHHH--HHHHHhh---------------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCC
Q 004932 245 MKGLPCGERRRVR--IARELVM---------------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307 (723)
Q Consensus 245 ~~~LSGGerqRv~--IA~aL~~---------------~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~ 307 (723)
..++||||+|-.- |+.+++. .=+++++||+ +-+|...+...++++++| |.-+|+++ |
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiat--P 450 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAA--P 450 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEE--S
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEEC--c
Confidence 4579999999643 3334333 1257999999 999999999999999976 54455543 3
Q ss_pred hHHHHhcCCEEEEEe
Q 004932 308 STEVFGLFDRICLLS 322 (723)
Q Consensus 308 ~~~i~~~~D~v~vL~ 322 (723)
. .+....|.++.+-
T Consensus 451 ~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 451 E-NISPERGTTYKLV 464 (483)
T ss_dssp S-SCCCSSSEEEECC
T ss_pred c-hhhhccCceEEEE
Confidence 3 5566788888764
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=90.73 E-value=0.12 Score=55.35 Aligned_cols=26 Identities=31% Similarity=0.309 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
..-.++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998765
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=90.71 E-value=0.13 Score=53.30 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+-.++++|.+|+|||||+|.|.|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3468999999999999999999975
|
| >1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=90.67 E-value=0.21 Score=52.49 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=25.0
Q ss_pred eeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHc
Q 004932 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 125 iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
.+|+ ++..-.|.-+.|.|+||+|||||.-.|..
T Consensus 137 ~~H~-~~v~~~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 137 QIHG-VLLEVFGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp EEEE-EEEEETTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eeEE-EEEEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4444 23333588899999999999999988765
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=90.55 E-value=0.13 Score=52.48 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
+...+.|.||+|+|||||++.|+..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4557889999999999999999975
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.98 E-value=0.049 Score=52.72 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-++|+|++|+|||||++.+.+-
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 4899999999999999988753
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=90.50 E-value=0.12 Score=56.46 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++|+|.+++|||||++.|+|..
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999864
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=90.47 E-value=0.13 Score=53.54 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+...+.|.||+|+|||+|.++|+..+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567888999999999999999754
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=90.43 E-value=0.14 Score=53.76 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+..-+.|.||+|+|||+|+++|+...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 55679999999999999999999753
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=90.42 E-value=0.085 Score=56.42 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|.+|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999964
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=90.41 E-value=0.13 Score=57.92 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=25.1
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
+.|-.+.|+|.+||||||+.+.|+..+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 3577899999999999999999998765
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=90.40 E-value=0.12 Score=57.04 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++|+|++|+|||||++.|+|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 723 | ||||
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-27 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-26 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-25 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-24 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 5e-24 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 5e-24 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-23 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 4e-23 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-22 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-22 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-22 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-22 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-21 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-21 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-20 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-19 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-19 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-18 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-16 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-16 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 8e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-05 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-05 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-05 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 0.002 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 108 bits (271), Expect = 4e-27
Identities = 55/233 (23%), Positives = 96/233 (41%), Gaps = 19/233 (8%)
Query: 113 VTIKG-KRRYSD-KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV 170
V ++ +R+ + V N G V++GP+ GK+T LR IAG + G +
Sbjct: 7 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE---GRI 63
Query: 171 FVNGAKSEMPYGSY---GFVERETTLIGSLTVREYLYYSALLQ-LPGFFCQRKNVVEDAI 226
+ V + + +TV E + + ++ P + V A
Sbjct: 64 YFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK--DEIDKRVRWAA 121
Query: 227 HAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 286
+ + + N+ Y L G+R+RV +AR +V+ P VL +DEPL +LD+ + M
Sbjct: 122 ELLQIEELLNR------YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAM 175
Query: 287 MVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338
+KKL T ++ + E + DRI +++ G L G
Sbjct: 176 RAEIKKLQQKLKVTTIY-VTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 105 bits (264), Expect = 2e-26
Identities = 61/243 (25%), Positives = 101/243 (41%), Gaps = 21/243 (8%)
Query: 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162
GA VV KDL I K +++K + G + ++GP +GK+T LR I+ +
Sbjct: 1 GAVVV-KDLRKRIGKK-----EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP 54
Query: 163 SARMYGEVFVNGAKSEMP----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQR 218
S+ G V V G ++ E ++ EYL + A +
Sbjct: 55 SS---GIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY-ASSSSEI 110
Query: 219 KNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 278
+ +VE A L + + G R++ IAR L++ P + +DEP L
Sbjct: 111 EEMVERATEIAGLGEKIKD------RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGL 164
Query: 279 DSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338
D ++A + LK+ + G T+L + + EV L DRI L+ NG + G +
Sbjct: 165 DVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELKER 223
Query: 339 FSN 341
+
Sbjct: 224 YKA 226
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 101 bits (253), Expect = 3e-25
Identities = 49/219 (22%), Positives = 87/219 (39%), Gaps = 25/219 (11%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
+DL+V Y V++ G + GP GK+TLL+ I+ L
Sbjct: 6 RDLSV------GYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG--- 56
Query: 169 EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA 228
E+ NG G F+ E + ++V +YL A L KN + DA+ +
Sbjct: 57 EIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK---VNKNEIMDALES 113
Query: 229 MSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV 288
+ + D K + L G RRV++A L++ + +D+P+ +D S ++
Sbjct: 114 VEVLDLKKK-------LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLK 166
Query: 289 TLKKL-ASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326
++ ++ G ++ S E D L +T
Sbjct: 167 SILEILKEKGIVIIS-----SREELSYCDVNENLHKYST 200
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 101 bits (252), Expect = 1e-24
Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 21/227 (9%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
K++T T K +K+ N G IMGP+ SGKST+L I + G
Sbjct: 5 KNVTKTYKMGEE-IIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTE---G 60
Query: 169 EVFVNG---------AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRK 219
EV+++ +++ GFV ++ LI LT E + + + G +
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAM-SGE 119
Query: 220 NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279
+ A+ + +++ + + L G+++RV IAR L P ++ D+P LD
Sbjct: 120 ERRKRALECLKMAELEERF--ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 280 SVSALLMMVTLKKLA-STGCTLLF-TINQSSTEVFGLFDRICLLSNG 324
S + +M LKKL G T++ T + V +RI L +G
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDI---NVARFGERIIYLKDG 221
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 98.9 bits (246), Expect = 5e-24
Identities = 46/210 (21%), Positives = 75/210 (35%), Gaps = 29/210 (13%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG----AKSEMPYGSY-GFVER 189
G + ++GP +GKSTLL +AG G + G A S + ++ +
Sbjct: 24 AGEILHLVGPNGAGKSTLLARMAGMTSGK----GSIQFAGQPLEAWSATKLALHRAYLSQ 79
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249
+ T + V YL + R ++ D A++L D + L
Sbjct: 80 QQTPPFATPVWHYLTLHQHDK------TRTELLNDVAGALALDDKLGR------STNQLS 127
Query: 250 CGERRRVRIARELVM-------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF 302
GE +RVR+A ++ +L +DEP+ LD + L L G ++
Sbjct: 128 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVM 187
Query: 303 TINQSSTEVFGLFDRICLLSNGNTLFFGET 332
+ R LL G L G
Sbjct: 188 -SSHDLNHTLRHAHRAWLLKGGKMLASGRR 216
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 99.7 bits (248), Expect = 5e-24
Identities = 44/214 (20%), Positives = 75/214 (35%), Gaps = 28/214 (13%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS------YGFVE 188
G +T+I+GP SGKSTL+ I G L G V+ +
Sbjct: 29 KGDVTLIIGPNGSGKSTLINVITGFLKADE---GRVYFENKDITNKEPAELYHYGIVRTF 85
Query: 189 RETTLIGSLTVREYLYYSALLQLPGFFC------------QRKNVVEDAIHAMSLSDYAN 236
+ + +TV E L + + + + LS +
Sbjct: 86 QTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYD 145
Query: 237 KLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 296
+ G L G+ + V I R L+ P ++ +DEP+ + A + + +L +
Sbjct: 146 RKAGE------LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 199
Query: 297 GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
G T L I V D + ++ NG + G
Sbjct: 200 GITFLI-IEHRLDIVLNYIDHLYVMFNGQIIAEG 232
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 98.8 bits (246), Expect = 1e-23
Identities = 54/242 (22%), Positives = 86/242 (35%), Gaps = 32/242 (13%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168
DL G +V+K + A G + I+G + SGKST LR I S G
Sbjct: 6 IDLHKRYGGH-----EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSE---G 57
Query: 169 EVFVNGAKSEMPYGSY------------------GFVERETTLIGSLTVREYLYYSALLQ 210
+ VNG + V + L +TV E + + +
Sbjct: 58 AIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV 117
Query: 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLF 270
L + + + + + A Y L G+++RV IAR L M P VL
Sbjct: 118 LGLSKHDARERALKYLAKVGIDERAQ-----GKYPVHLSGGQQQRVSIARALAMEPDVLL 172
Query: 271 IDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
DEP LD ++ +++LA G T++ + + + L G G
Sbjct: 173 FDEPTSALDPELVGEVLRIMQQLAEEGKTMVV-VTHEMGFARHVSSHVIFLHQGKIEEEG 231
Query: 331 ET 332
+
Sbjct: 232 DP 233
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 96.5 bits (240), Expect = 4e-23
Identities = 48/228 (21%), Positives = 83/228 (36%), Gaps = 18/228 (7%)
Query: 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA---R 165
+ L V +K + G + ++G +GK+T L AIAG +
Sbjct: 10 QSLHVYYGAI-----HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 166 MYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDA 225
G+ N + V + LTV E L A + K +E
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE--GIKRDLEWI 122
Query: 226 IHAMS-LSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284
L + +L G L GE++ + I R L+ RP +L +DEP L +
Sbjct: 123 FSLFPRLKERLKQLGGT------LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVS 176
Query: 285 LMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332
+ ++K+ G T+L + Q++ + +L G + G+
Sbjct: 177 EVFEVIQKINQEGTTILL-VEQNALGALKVAHYGYVLETGQIVLEGKA 223
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 95.0 bits (236), Expect = 1e-22
Identities = 52/207 (25%), Positives = 83/207 (40%), Gaps = 13/207 (6%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG---AKSEMPYGSYGFVERET 191
G V +GP+ GKSTLLR IAG ++ ++F+ + G V +
Sbjct: 25 EGEFVVFVGPSGCGKSTLLRMIAGLETITSG---DLFIGEKRMNDTPPAERGVGMVFQSY 81
Query: 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251
L L+V E + + L V + L+ ++ K L G
Sbjct: 82 ALYPHLSVAENMSF-GLKLAGAKKEVINQRVNQVAEVLQLAHLLDR------KPKALSGG 134
Query: 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEV 311
+R+RV I R LV P V +DEPL +LD+ + M + + +L + + E
Sbjct: 135 QRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA 194
Query: 312 FGLFDRICLLSNGNTLFFGETLACLQH 338
L D+I +L G G+ L +
Sbjct: 195 MTLADKIVVLDAGRVAQVGKPLELYHY 221
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 95.0 bits (236), Expect = 2e-22
Identities = 50/213 (23%), Positives = 84/213 (39%), Gaps = 20/213 (9%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG------AKSEMP--YGSYGF 186
G + ++G + +GKSTL+R + + G V V+G ++SE+ G
Sbjct: 30 AGQIYGVIGASGAGKSTLIRCVNLLERPTE---GSVLVDGQELTTLSESELTKARRQIGM 86
Query: 187 VERETTLIGSLTVREYLYYSALLQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
+ + L+ S TV + L P + K V + + + L D + Y
Sbjct: 87 IFQHFNLLSSRTVFGNVALPLELDNTPK--DEVKRRVTELLSLVGLGDKHDS------YP 138
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN 305
L G+++RV IAR L P VL DE LD + ++ LK + + I
Sbjct: 139 SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLIT 198
Query: 306 QSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338
V + D + ++SNG + H
Sbjct: 199 HEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 94.9 bits (236), Expect = 2e-22
Identities = 48/244 (19%), Positives = 92/244 (37%), Gaps = 25/244 (10%)
Query: 96 AVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRA 155
A +I + ++ ++K N G +G + GKSTL+
Sbjct: 7 AQPIEIKQGRIDIDHVSFQYNDNEA---PILKDINLSIEKGETVAFVGMSGGGKSTLINL 63
Query: 156 IAGRLPHSARMYGEVFVNG----AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQL 211
I ++ G++ ++G + + ++ ++ S TV+E +
Sbjct: 64 IPRFYDVTS---GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL------ 114
Query: 212 PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG-----LPCGERRRVRIARELVMRP 266
G V +A + D+ L G+ G L G+++R+ IAR + P
Sbjct: 115 -GRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNP 173
Query: 267 HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326
+L +DE LD S ++ L L+ TL+ S+ D+I ++ NG+
Sbjct: 174 PILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT---HADKIVVIENGHI 230
Query: 327 LFFG 330
+ G
Sbjct: 231 VETG 234
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 95.4 bits (237), Expect = 3e-22
Identities = 38/196 (19%), Positives = 74/196 (37%), Gaps = 17/196 (8%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI 194
G M I G SGK++LL I G L S G + +G F + + ++
Sbjct: 61 KGEMLAITGSTGSGKTSLLMLILGELEASE---GIIKHSG--------RVSFCSQFSWIM 109
Query: 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254
T++E + + + + ++ N ++G L G+R
Sbjct: 110 -PGTIKENIIFGVSYD-EYRYKSVVKACQLQQDITKFAEQDNTVLG--EGGVTLSGGQRA 165
Query: 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 314
R+ +AR + + +D P +LD + + + T + ++ E
Sbjct: 166 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK--MEHLRK 223
Query: 315 FDRICLLSNGNTLFFG 330
D+I +L G++ F+G
Sbjct: 224 ADKILILHQGSSYFYG 239
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 91.5 bits (227), Expect = 2e-21
Identities = 48/214 (22%), Positives = 85/214 (39%), Gaps = 21/214 (9%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG---------AKSEMPYGSYG 185
G +++GP+ GK+T LR IAG S ++++
Sbjct: 28 DGEFMILLGPSGCGKTTTLRMIAGLEEPSRG---QIYIGDKLVADPEKGIFVPPKDRDIA 84
Query: 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245
V + L +TV + + + L+ + V + + L++ N+
Sbjct: 85 MVFQSYALYPHMTVYDNIAFPLKLRKVPR-QEIDQRVREVAELLGLTELLNRKPRE---- 139
Query: 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTI 304
L G+R+RV + R +V +P V +DEPL +LD+ + M LKKL G T ++ +
Sbjct: 140 --LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY-V 196
Query: 305 NQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338
E + DRI +++ G G
Sbjct: 197 THDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 91.8 bits (228), Expect = 2e-21
Identities = 49/245 (20%), Positives = 86/245 (35%), Gaps = 21/245 (8%)
Query: 93 EGAAVARKIAGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTL 152
EG V + G + ++++T T G+ +++ N G ++G + SGKST+
Sbjct: 2 EGKRVIDRATGD-LEFRNVTFTYPGREV---PALRNINLKIPAGKTVALVGRSGSGKSTI 57
Query: 153 LRAIAGRLPHSAR--MYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210
I + + V + L Y
Sbjct: 58 ASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEY 117
Query: 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRRVRIARELVMR 265
+ +E+A D+ NK+ G L G+R+R+ IAR L+
Sbjct: 118 -------SREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD 170
Query: 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325
+L +DE LD+ S + L +L T L ++ ST D I ++ +G
Sbjct: 171 SPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVEDGI 227
Query: 326 TLFFG 330
+ G
Sbjct: 228 IVERG 232
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 89.4 bits (221), Expect = 1e-20
Identities = 47/218 (21%), Positives = 85/218 (38%), Gaps = 16/218 (7%)
Query: 118 KRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177
R++ + + + + G VI+GP +GK+ L IAG + + ++G
Sbjct: 8 SRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG---RILLDGKDV 64
Query: 178 EMPYG---SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY 234
FV + +L + V++ L + + + V D + +
Sbjct: 65 TDLSPEKHDIAFVYQNYSLFPHMNVKKNLEF----GMRMKKIKDPKRVLDTARDLKIEHL 120
Query: 235 ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294
++ L GE++RV +AR LV P +L +DEPL LD + L L
Sbjct: 121 LDR------NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLH 174
Query: 295 STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332
+ I TE + DRI ++ +G + G+
Sbjct: 175 KKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKP 212
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 86.1 bits (213), Expect = 2e-19
Identities = 47/214 (21%), Positives = 88/214 (41%), Gaps = 13/214 (6%)
Query: 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMP 180
S+++++ + A P ++ GP+ GKST+ + +A GE+ ++G +
Sbjct: 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA---GEITIDGQPIDNIS 70
Query: 181 YGSY----GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYAN 236
++ GFV +++ ++ Y Q ++ ++ D N
Sbjct: 71 LENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLN 130
Query: 237 KLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 296
+G + G+R+R+ IAR + P +L +DE LDS S ++ L L
Sbjct: 131 TEVG--ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK- 187
Query: 297 GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330
G T L ++ ST V D+I + G G
Sbjct: 188 GRTTLVIAHRLSTIV--DADKIYFIEKGQITGSG 219
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 86.2 bits (213), Expect = 2e-19
Identities = 51/225 (22%), Positives = 95/225 (42%), Gaps = 17/225 (7%)
Query: 111 LTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV 170
+ + ++ ++R + + + + V++GP +GKS L IAG + GEV
Sbjct: 1 MFLKVRAEKRLGNFRLNVD--FEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDR---GEV 55
Query: 171 FVNGAKSEMPYGS---YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIH 227
+NGA GFV ++ L L+V A +R V +
Sbjct: 56 RLNGADITPLPPERRGIGFVPQDYALFPHLSVYRN---IAYGLRNVERVERDRRVREMAE 112
Query: 228 AMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 287
+ ++ ++ L GER+RV +AR LV++P +L +DEPL +D + ++M
Sbjct: 113 KLGIAHLLDR------KPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLM 166
Query: 288 VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332
L+ + + + E L D + ++ NG + G+
Sbjct: 167 EELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKL 211
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 83.2 bits (205), Expect = 2e-18
Identities = 51/236 (21%), Positives = 97/236 (41%), Gaps = 18/236 (7%)
Query: 113 VTIKG-KRRYSDKVVKSSNGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPHSA---R 165
+ +K + + V + + + G I+GP+ +GK+T +R IAG S
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 166 MYGEVFVNGAKSEMP--YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVE 223
+ + K +P G V + L +LT E L + + + VE
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFEN-IAFPLTNMKMSKEEIRKRVE 122
Query: 224 DAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283
+ + + N + + L +++RV +AR LV P +L +DEP +LD+
Sbjct: 123 EVAKILDIHHVLN------HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176
Query: 284 LLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338
+K++ G TLL ++ ++F + DR+ +L G + G+ +
Sbjct: 177 DSARALVKEVQSRLGVTLLV-VSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 78.0 bits (192), Expect = 1e-16
Identities = 49/206 (23%), Positives = 83/206 (40%), Gaps = 24/206 (11%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-----AKSEMPYGSYGFVER 189
G + I+G + SGKSTL + I +V ++G A G V +
Sbjct: 28 QGEVIGIVGRSGSGKSTLTKLIQRFYIPENG---QVLIDGHDLALADPNWLRRQVGVVLQ 84
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCY 244
+ L+ + ++ + + + V A D+ ++L G
Sbjct: 85 DNVLL-NRSIIDNISLANPGM-------SVEKVIYAAKLAGAHDFISELREGYNTIVGEQ 136
Query: 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTI 304
GL G+R+R+ IAR LV P +L DE LD S ++M + K+ G T++
Sbjct: 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIA 195
Query: 305 NQSSTEVFGLFDRICLLSNGNTLFFG 330
++ ST DRI ++ G + G
Sbjct: 196 HRLST--VKNADRIIVMEKGKIVEQG 219
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.2 bits (190), Expect = 2e-16
Identities = 41/207 (19%), Positives = 76/207 (36%), Gaps = 23/207 (11%)
Query: 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMPYGSY----GFVER 189
PG +T ++GP SGKST+ + + ++ ++G + + V +
Sbjct: 39 PGEVTALVGPNGSGKSTVAALLQNLYQPTGG---QLLLDGKPLPQYEHRYLHRQVAAVGQ 95
Query: 190 ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG-- 247
E + +++E + Y + + A + + L G+
Sbjct: 96 EPQVF-GRSLQENIAYGLTQK------PTMEEITAAAVKSGAHSFISGLPQGYDTEVDEA 148
Query: 248 ---LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFT 303
L G+R+ V +AR L+ +P VL +D+ LD+ S L + L + ++L
Sbjct: 149 GSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLI 208
Query: 304 INQSSTEVFGLFDRICLLSNGNTLFFG 330
S D I L G G
Sbjct: 209 TQHLSL--VEQADHILFLEGGAIREGG 233
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 53.5 bits (127), Expect = 8e-09
Identities = 21/185 (11%), Positives = 40/185 (21%), Gaps = 33/185 (17%)
Query: 140 VIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTV 199
+I G GK+TL++ I RL A +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRA---IGFWTEE-----------------VRDPETKK 43
Query: 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259
R F + + + + ++ + +
Sbjct: 44 RTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILE----------RAYR 93
Query: 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319
R V+ IDE + + + ++ TI I
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDL-VRQIMHDPNVNVVATIPIRDVHPL--VKEIR 150
Query: 320 LLSNG 324
L
Sbjct: 151 RLPGA 155
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 37.7 bits (86), Expect = 0.002
Identities = 18/130 (13%), Positives = 40/130 (30%), Gaps = 9/130 (6%)
Query: 140 VIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTV 199
++ G + +GKS ++R + LP +G + A + G +E + S+
Sbjct: 7 ILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGP 66
Query: 200 REYLYYSAL---LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH----CYMKGLP--C 250
A + R + + + + + +G ++
Sbjct: 67 EFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVA 126
Query: 251 GERRRVRIAR 260
R R R
Sbjct: 127 EGRETARGDR 136
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 723 | |||
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.8 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.55 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.13 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.01 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.74 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.66 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.0 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.78 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.54 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.14 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.09 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.08 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.05 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.03 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.03 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.0 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.98 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.81 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.8 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.77 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.73 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.57 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.57 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.56 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.45 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.43 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.41 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.38 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.33 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.31 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.3 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.3 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.25 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.23 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.2 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.14 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.12 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.91 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.9 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.89 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.84 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.84 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.82 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.81 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.76 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.76 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.72 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.7 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.69 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.68 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.65 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.64 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.59 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.58 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.57 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.54 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.53 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.52 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.48 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.47 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.45 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.43 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.41 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.41 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.37 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.3 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.28 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.28 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.26 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.23 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.21 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.16 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 95.16 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.14 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.1 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.07 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.04 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.02 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.93 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.87 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.83 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.76 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.72 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.71 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.63 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.59 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.59 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.58 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.58 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.52 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.5 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.46 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.34 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.32 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.27 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.03 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.91 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.85 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.82 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.82 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.81 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.78 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.76 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.76 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.74 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.72 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.71 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.68 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.66 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.62 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.6 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.55 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.48 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.47 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.36 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.34 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.27 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.26 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.17 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.16 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.12 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.09 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.05 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.04 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.02 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.01 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.0 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 92.98 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 92.92 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 92.87 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.86 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.8 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.79 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.72 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.71 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.69 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.63 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.54 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.53 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 92.52 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.51 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.51 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.47 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.44 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.33 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.26 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.21 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.14 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.09 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.08 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.03 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.01 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 91.85 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 91.84 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.8 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 91.77 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 91.74 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.74 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 91.69 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.63 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 91.62 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 91.61 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 91.58 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.54 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.47 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 91.45 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.26 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.23 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.18 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.16 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.02 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.01 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.81 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 90.8 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 90.77 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 90.73 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 90.66 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.65 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 90.56 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 90.43 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 90.26 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.22 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 90.2 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 90.09 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.06 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.05 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 89.79 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.72 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 89.58 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 89.57 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 89.37 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 89.33 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.26 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.25 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 89.21 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.51 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 88.44 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 87.8 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 87.12 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.05 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 86.92 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 86.85 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 86.06 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 86.04 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 85.74 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 85.44 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 84.64 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 84.53 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 84.26 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 83.09 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 82.38 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 82.22 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 81.7 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 80.65 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 80.48 |
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1e-52 Score=427.92 Aligned_cols=217 Identities=24% Similarity=0.350 Sum_probs=194.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++||+++|. +.++|+||||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+++..
T Consensus 3 ~i~v~nl~k~yg-----~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~s---G~I~~~g~~i~~~~~~~ 74 (240)
T d1g2912 3 GVRLVDVWKVFG-----EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSR---GQIYIGDKLVADPEKGI 74 (240)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSE---EEEEETTEEEEEGGGTE
T ss_pred cEEEEeEEEEEC-----CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCC---CEEEECCEEecccchhh
Confidence 489999999993 4679999999999999999999999999999999999999974 999999986421
Q ss_pred ----CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHH
Q 004932 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (723)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqR 255 (723)
.++.+|||+|++.++|.+||+||+.++...+.. ...+.+++++++++.++|.+.+++. |++||||||||
T Consensus 75 ~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~-~~~e~~~~v~~~l~~~~l~~~~~~~------p~~LSGGqkQR 147 (240)
T d1g2912 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKV-PRQEIDQRVREVAELLGLTELLNRK------PRELSGGQRQR 147 (240)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHTCGGGTTCC------GGGSCHHHHHH
T ss_pred hcccccccceecccchhhcchhhhhHhhhhhHHHcCC-CHHHHHHHHHHHHHHcCChhHhcCC------hhhCCHHHHHH
Confidence 135699999999999999999999998876532 2234677899999999999888774 55999999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
|+|||||+.+|++|||||||+|||+.++..++++|+++.++ |.|||+++|+. +++.++||||++|++|++++.|++++
T Consensus 148 v~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~-~~~~~~~drv~vm~~G~iv~~G~~~e 226 (240)
T d1g2912 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDE 226 (240)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999865 99999988876 58999999999999999999999999
Q ss_pred HHH
Q 004932 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
+++
T Consensus 227 l~~ 229 (240)
T d1g2912 227 VYD 229 (240)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.4e-53 Score=430.07 Aligned_cols=217 Identities=25% Similarity=0.343 Sum_probs=187.3
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (723)
.++++||+++|. ++++|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++.. ..
T Consensus 6 ~I~v~nlsk~yg-----~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~ 77 (239)
T d1v43a3 6 EVKLENLTKRFG-----NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKD 77 (239)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred eEEEEEEEEEEC-----CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEEcceecccCCccc
Confidence 489999999993 568999999999999999999999999999999999999997 4999999998643 23
Q ss_pred ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 004932 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (723)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~a 261 (723)
+.+|||+|++.++|.+||+||+.|.+..+.. ...+.+++++++++.++|++.+++. +++|||||||||+||||
T Consensus 78 r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~------~~~LSGGq~QRvaiAra 150 (239)
T d1v43a3 78 RNISMVFQSYAVWPHMTVYENIAFPLKIKKF-PKDEIDKRVRWAAELLQIEELLNRY------PAQLSGGQRQRVAVARA 150 (239)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC--CC-CHHHHHHHHHHHHHHTTCGGGTTSC------TTTCCSSCHHHHHHHHH
T ss_pred ceEEEEeechhhcccchHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhhhcCC------hhhCCHHHHHHHHHHhh
Confidence 5699999999999999999999887544321 2223567899999999999988774 56999999999999999
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|+.+|+||||||||+|||+.++.+++++|+++++ .|+|+|+++|+. .++.++||||++|++|++++.|+++++++
T Consensus 151 L~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 151 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred hccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999975 599999988886 58999999999999999999999999864
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4e-53 Score=428.96 Aligned_cols=216 Identities=28% Similarity=0.399 Sum_probs=159.1
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (723)
++++||+++|. .+++|+||||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+++.. .++
T Consensus 1 Iev~nv~k~yg-----~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~s---G~I~i~g~~i~~~~~~~r 72 (232)
T d2awna2 1 VQLQNVTKAWG-----EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS---GDLFIGEKRMNDTPPAER 72 (232)
T ss_dssp EEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE---EEEEESSSCCTTSCGGGT
T ss_pred CEEEEEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCC---CEEEECCEECCCCchhhc
Confidence 57999999993 5689999999999999999999999999999999999999974 999999987642 235
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004932 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
.+|||+|++.+++.+||+||+.++...+.. ...+.+++++++++.++|.+..++.+ ++|||||||||+|||||
T Consensus 73 ~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~l~~~~~~~~------~~LSGGqkQRvaiAraL 145 (232)
T d2awna2 73 GVGMVFQSYALYPHLSVAENMSFGLKLAGA-KKEVINQRVNQVAEVLQLAHLLDRKP------KALSGGQRQRVAIGRTL 145 (232)
T ss_dssp CEEEECSSCCC----------------------CHHHHHHHHHHHHC---------------------------CHHHHH
T ss_pred eeeeeccccccccchhHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCChhhhhCCh------hhCCHHHHHHHHHHHHH
Confidence 699999999999999999999998665421 12245678999999999999888855 59999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
+.+|++|||||||+|||+.++.++++.|+++.+ .|+|||+++|+. .++.++||||++|++|++++.|+++++++
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999999999999999999999999999974 699999988876 68999999999999999999999999865
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=7.2e-53 Score=428.82 Aligned_cols=219 Identities=24% Similarity=0.319 Sum_probs=193.6
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~------ 178 (723)
.++++||+++|+. +...+|+|||+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.
T Consensus 3 ~i~v~nlsk~y~~---g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~ 76 (242)
T d1oxxk2 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLI 76 (242)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEES
T ss_pred EEEEEeEEEEECC---CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCC---CceEEECCEEeecCchhh
Confidence 4889999999953 2457999999999999999999999999999999999999997 499999998742
Q ss_pred C--CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHH
Q 004932 179 M--PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (723)
Q Consensus 179 ~--~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv 256 (723)
. .++.+|||+|++.++|.+||+||+.|++..+. ....+.+++++++++.+||++.+++.+ ++|||||||||
T Consensus 77 ~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~-~~~~~~~~~v~~~l~~~gL~~~~~~~p------~~LSGGqkQRv 149 (242)
T d1oxxk2 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK-MSKEEIRKRVEEVAKILDIHHVLNHFP------RELSGAQQQRV 149 (242)
T ss_dssp SCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS-CCHHHHHHHHHHHHHHTTCGGGTTSCG------GGSCHHHHHHH
T ss_pred cchhhccceEEeccccccccccHHHHhhhhhHhhc-CCHHHHHHHHHHHHhhcChHhhhhCCh------hhCCHHHHhHH
Confidence 1 13569999999999999999999998765431 122336778999999999998887754 59999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 257 ~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
+|||||+.+|++|||||||+|||+.++.++++.|+++++ .|.|+|+++|++ .++.++||||++|++|++++.|+++++
T Consensus 150 aiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~-~~~~~~~dri~vm~~G~iv~~g~~~el 228 (242)
T d1oxxk2 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDL 228 (242)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999975 599999988886 589999999999999999999999998
Q ss_pred HH
Q 004932 336 LQ 337 (723)
Q Consensus 336 ~~ 337 (723)
++
T Consensus 229 ~~ 230 (242)
T d1oxxk2 229 YD 230 (242)
T ss_dssp HH
T ss_pred Hh
Confidence 65
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.5e-52 Score=423.54 Aligned_cols=212 Identities=24% Similarity=0.331 Sum_probs=191.4
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---Cc
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---YG 182 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---~~ 182 (723)
++++||+++|+ ..+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++... ++
T Consensus 2 i~v~nlsk~y~------~~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r 72 (229)
T d3d31a2 2 IEIESLSRKWK------NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72 (229)
T ss_dssp EEEEEEEEECS------SCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHH
T ss_pred EEEEEEEEEeC------CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CCEEEEccEeccccchhHh
Confidence 68999999983 25899999999999999999999999999999999999997 49999999986432 24
Q ss_pred eEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 004932 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (723)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL 262 (723)
.+|||+|++.++|.+||+||+.|+..++.. ..+++++++++.++|.+.+++.+ .+|||||||||+|||||
T Consensus 73 ~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~------~~LSGG~~QRvaiAraL 142 (229)
T d3d31a2 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKI----KDPKRVLDTARDLKIEHLLDRNP------LTLSGGEQQRVALARAL 142 (229)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCC----CCHHHHHHHHHHTTCTTTTTSCG------GGSCHHHHHHHHHHHHT
T ss_pred cceeeccccccCccccHHHHHHHHHhhccc----cHHHHHHHHHHHhcchhhHhCCh------hhCCHHHhcchhhhhhh
Confidence 699999999999999999999998876532 23467999999999999988755 49999999999999999
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
+.+|++|||||||+|||+.++.++.++|+++++ .|.|||+++|++ .++.++||||++|++|++++.|+++++++
T Consensus 143 ~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~-~~~~~~~drv~vm~~G~iv~~g~~~el~~ 217 (229)
T d3d31a2 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (229)
T ss_dssp TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred hccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999975 599999988886 58999999999999999999999999864
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-52 Score=426.26 Aligned_cols=219 Identities=22% Similarity=0.287 Sum_probs=193.3
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (723)
++++||+++|..++ ...++|+||||++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++...
T Consensus 2 i~v~nlsk~y~~~~-~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~ 77 (240)
T d3dhwc1 2 IKLSNITKVFHQGT-RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESEL 77 (240)
T ss_dssp EEEEEEEEEEECSS-CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHH
T ss_pred EEEEeEEEEeCCCC-eeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcccc---CCceEEcCeEeeeCChhhh
Confidence 78999999996432 2336899999999999999999999999999999999999997 49999999986321
Q ss_pred ---CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHH
Q 004932 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (723)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~ 257 (723)
++.+|||+|++.+++.+||+||+.+++.++.. ...+.+++++++++.+||.+.+++ ++++|||||||||+
T Consensus 78 ~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~-~~~~~~~~v~~~L~~vgL~~~~~~------~~~~LSGG~~QRva 150 (240)
T d3dhwc1 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT-PKDEVKRRVTELLSLVGLGDKHDS------YPSNLSGGQKQRVA 150 (240)
T ss_dssp HHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTC-CTTHHHHHHHHHHHHHSTTTTTSS------CBSCCCHHHHHHHH
T ss_pred hhhhccccccccccccCCCccHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhhC------ChhhCCHHHHHHHH
Confidence 14699999999999999999999998765421 122356789999999999988766 45699999999999
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
|||||+.+|++|||||||+|||+.++.+|+++|++++++ |.|||+++|+. .++.++||||++|++|++++.|++++++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl-~~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCH-HHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred HhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999865 99999988876 6889999999999999999999999874
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.8e-51 Score=415.13 Aligned_cols=215 Identities=28% Similarity=0.344 Sum_probs=185.5
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (723)
++++||+++|..++ ....+|+||||++++||++||+|||||||||||++|+|+.+|+ +|+|.++|+++...
T Consensus 2 I~i~nlsk~y~~~~-~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~ 77 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGE-EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDEL 77 (230)
T ss_dssp EEEEEEEEEEEETT-EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHH
T ss_pred EEEEeEEEEeCCCC-eeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCC---cceeEECCEEcCcCChhhc
Confidence 68999999996432 2345899999999999999999999999999999999999997 49999999986432
Q ss_pred ----CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCcc--chHHHHHHHHHHHcCCch-HhhhhhcCCCCCCCCCHHHH
Q 004932 181 ----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF--CQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGER 253 (723)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~--~~~~~~v~~~l~~lgL~~-~~~~~ig~~~~~~~LSGGer 253 (723)
++.+|||+|++.++|.+||+||+.++...+..... .+..+++.++++.++|.+ .+++ +|++||||||
T Consensus 78 ~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~------~p~~LSGGqk 151 (230)
T d1l2ta_ 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANH------KPNQLSGGQQ 151 (230)
T ss_dssp HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTC------CGGGSCHHHH
T ss_pred chhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcC------ChhhCCHHHH
Confidence 13599999999999999999999998876432222 235667889999999975 4555 5569999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
|||+|||||+.+|+||||||||+|||+.++.+++++|+++.+ .|+|+|+++|++ +.+ ++||||++|++|+|+++|++
T Consensus 152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~~a-~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-NVA-RFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCH-HHH-HhCCEEEEEECCEEEEeccC
Confidence 999999999999999999999999999999999999999986 489999998886 444 79999999999999999975
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=6.8e-51 Score=420.42 Aligned_cols=218 Identities=25% Similarity=0.277 Sum_probs=191.5
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.|+++||++.|. ..++|+||||++++||++||+||||||||||+|+|+|+++|+ +|+|.++|+++..
T Consensus 2 ~Lev~nl~k~yg-----~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~ 73 (258)
T d1b0ua_ 2 KLHVIDLHKRYG-----GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKD 73 (258)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTT
T ss_pred eEEEEEEEEEEC-----CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCC---CCCEEECCEEeccCCccc
Confidence 389999999993 467999999999999999999999999999999999999987 4999999987521
Q ss_pred -------------CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHh-hhhhcCCCCC
Q 004932 180 -------------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYA-NKLIGGHCYM 245 (723)
Q Consensus 180 -------------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~ig~~~~~ 245 (723)
.++.+|||+|++.+++.+||.||+.++..........+.++++.++++.++|.+.. ++ +|
T Consensus 74 ~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~------~p 147 (258)
T d1b0ua_ 74 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGK------YP 147 (258)
T ss_dssp SSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTS------CG
T ss_pred hhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhcc------Cc
Confidence 11459999999999999999999998754333323334667899999999997644 44 45
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCe
Q 004932 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (723)
Q Consensus 246 ~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (723)
.+|||||||||+|||||+.+|++|||||||+|||+.++.+|+++|++++++|+|||+++|+. .++.++||||++|++|+
T Consensus 148 ~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl-~~~~~~adri~vm~~G~ 226 (258)
T d1b0ua_ 148 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQGK 226 (258)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH-HHHHHHCSEEEEEETTE
T ss_pred ccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 59999999999999999999999999999999999999999999999999999999987775 68999999999999999
Q ss_pred EEEEeChhHHHH
Q 004932 326 TLFFGETLACLQ 337 (723)
Q Consensus 326 iv~~G~~~~~~~ 337 (723)
+++.|++++++.
T Consensus 227 iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 227 IEEEGDPEQVFG 238 (258)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEEcCHHHHHh
Confidence 999999999865
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.8e-50 Score=409.58 Aligned_cols=219 Identities=26% Similarity=0.312 Sum_probs=196.9
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++||++.| +++++|+||||.+++||++||+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 2 aI~v~nl~k~y-----g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~ 73 (238)
T d1vpla_ 2 AVVVKDLRKRI-----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEV 73 (238)
T ss_dssp CEEEEEEEEEE-----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHH
T ss_pred CEEEEeEEEEE-----CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECcEecccChHHH
Confidence 37899999999 3568999999999999999999999999999999999999997 49999999986432
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHH
Q 004932 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~ 260 (723)
++.++|+||++.+++.+||.||+.+...+... ...+.+++++++++.++|.+..++.++ +|||||||||+|||
T Consensus 74 ~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~------~lSgG~~qrv~iA~ 146 (238)
T d1vpla_ 74 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYAS-SSSEIEEMVERATEIAGLGEKIKDRVS------TYSKGMVRKLLIAR 146 (238)
T ss_dssp HTTEEEECTTCCCCTTSBHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHCCGGGGGSBGG------GCCHHHHHHHHHHH
T ss_pred HhhEeEeeeccccCCCccHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhCCCHHHHhhhhh------hCCHHHHHHHHHHH
Confidence 24699999999999999999999988766432 222356778999999999999888665 99999999999999
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHHHh
Q 004932 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (723)
Q Consensus 261 aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (723)
||+++|++|||||||+|||+.++.++.++|++++++|+|||+++|+. +++..+||||++|++|++++.|+++++.+.+
T Consensus 147 al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l-~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 224 (238)
T d1vpla_ 147 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKERY 224 (238)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHhcc
Confidence 99999999999999999999999999999999999999999988886 5899999999999999999999999998654
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.4e-50 Score=414.27 Aligned_cols=217 Identities=22% Similarity=0.279 Sum_probs=189.3
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++||++.|. ++++|+||||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+++...
T Consensus 5 ~~Lev~~l~k~yg-----~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~---G~I~~~G~~i~~~~~~ 76 (240)
T d1ji0a_ 5 IVLEVQSLHVYYG-----AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQK---GKIIFNGQDITNKPAH 76 (240)
T ss_dssp EEEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETTEECTTCCHH
T ss_pred eEEEEeeEEEEEC-----CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---cEEEecccccccccHH
Confidence 4689999999993 5679999999999999999999999999999999999999974 9999999986432
Q ss_pred ---CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHc-CCchHhhhhhcCCCCCCCCCHHHHHHH
Q 004932 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM-SLSDYANKLIGGHCYMKGLPCGERRRV 256 (723)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~ig~~~~~~~LSGGerqRv 256 (723)
+..++|++|+..+++.+||+||+.+.+..... ....++.++++++.+ +|.+..++.+ .+|||||||||
T Consensus 77 ~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~------~~LSGG~~Qrv 148 (240)
T d1ji0a_ 77 VINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD--KEGIKRDLEWIFSLFPRLKERLKQLG------GTLSGGEQQML 148 (240)
T ss_dssp HHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCC--SSHHHHHHHHHHHHCHHHHTTTTSBS------SSSCHHHHHHH
T ss_pred HHHHhcccccCcccccCCcccHHHHHHHHHHhcCC--HHHHHHHHHHHHHHhhChHHHHhCch------hhCCHHHHHHH
Confidence 12489999999999999999999876543322 123455577777776 6777776654 49999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHH
Q 004932 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (723)
Q Consensus 257 ~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (723)
+|||||+.+|++|||||||+|||+.++.+++++|++++++|+|||+++|+. .++.++||||++|++|++++.|+++++.
T Consensus 149 ~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l-~~~~~~~drv~vl~~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 149 AIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999999999999999999999999999999999999988876 5899999999999999999999999986
Q ss_pred H
Q 004932 337 Q 337 (723)
Q Consensus 337 ~ 337 (723)
+
T Consensus 228 ~ 228 (240)
T d1ji0a_ 228 D 228 (240)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.9e-49 Score=409.65 Aligned_cols=218 Identities=20% Similarity=0.230 Sum_probs=191.1
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++||+++|. +.++|+||||++++||++||+||||||||||+|+|+|+++|++ |+|.++|+++...
T Consensus 4 iL~v~nlsk~yg-----~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~---G~I~~~g~~i~~~~~~~ 75 (254)
T d1g6ha_ 4 ILRTENIVKYFG-----EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE---GRVYFENKDITNKEPAE 75 (254)
T ss_dssp EEEEEEEEEEET-----TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE---EEEEETTEECTTCCHHH
T ss_pred eEEEEEEEEEEC-----CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCC---cEEEECCEeccchhHHH
Confidence 589999999993 5679999999999999999999999999999999999999974 9999999986432
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcC-----------C-CccchHHHHHHHHHHHcCCchHhhhhhcCCCCCC
Q 004932 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQL-----------P-GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-----------~-~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~ 246 (723)
...++|++|++.+++.+||.||+.++...+. . ....+..+++.++++.+++.+..++.++
T Consensus 76 ~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------ 149 (254)
T d1g6ha_ 76 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG------ 149 (254)
T ss_dssp HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG------
T ss_pred HHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchh------
Confidence 1249999999999999999999987542211 0 0111234678899999999998888665
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 004932 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (723)
Q Consensus 247 ~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (723)
+|||||||||+|||||+.+|++|||||||+|||+.++.++++.|++++++|+|||+++|+. +++.++||||++|++|++
T Consensus 150 ~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl-~~~~~~~Drv~vm~~G~i 228 (254)
T d1g6ha_ 150 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL-DIVLNYIDHLYVMFNGQI 228 (254)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-STTGGGCSEEEEEETTEE
T ss_pred hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHHhCCEEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999999999999999988877 589999999999999999
Q ss_pred EEEeChhHHHH
Q 004932 327 LFFGETLACLQ 337 (723)
Q Consensus 327 v~~G~~~~~~~ 337 (723)
++.|+++|..+
T Consensus 229 v~~g~~~e~~~ 239 (254)
T d1g6ha_ 229 IAEGRGEEEIK 239 (254)
T ss_dssp EEEEESHHHHH
T ss_pred EEEecHHHHhh
Confidence 99999988654
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=7e-49 Score=398.44 Aligned_cols=196 Identities=26% Similarity=0.359 Sum_probs=174.5
Q ss_pred ceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCceEEEEcCCCccCCCCCHHHHHH
Q 004932 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYGSYGFVERETTLIGSLTVREYLY 204 (723)
Q Consensus 128 ~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~E~l~ 204 (723)
||||++. ||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++.. .++.+|||+|++.++|.+||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhh
Confidence 8999995 6899999999999999999999999997 4999999998532 2467999999999999999999998
Q ss_pred HHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 004932 205 YSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284 (723)
Q Consensus 205 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~ 284 (723)
|++. . ....+.+++++++++.+||.+.+++.+ ++|||||||||+|||||+.+|++|||||||+|||+.++.
T Consensus 93 ~~l~--~-~~~~~~~~~v~~~l~~~gl~~~~~~~~------~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 93 YGLR--N-VERVERDRRVREMAEKLGIAHLLDRKP------ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TTCT--T-SCHHHHHHHHHHHHHTTTCTTTTTCCG------GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred hhhc--c-cCHHHHHHHHHHHHHhcCcHhhhhCCh------hhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHH
Confidence 8632 1 112235678999999999999887754 599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 285 LMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 285 ~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
.+++.|+++++ .|.|||+++|+. .++.++||||++|++|++++.|+++++++
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~-~~~~~~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEEecHHHHhc
Confidence 99999999975 499999988886 58999999999999999999999999864
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-47 Score=392.26 Aligned_cols=215 Identities=25% Similarity=0.358 Sum_probs=180.9
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (723)
++++||++.|+. ..+.+|+||||.+++||.+||+||||||||||+++|+|+++|+ +|+|.+||+++...
T Consensus 2 I~~~nvsf~Y~~---~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~l 75 (241)
T d2pmka1 2 ITFRNIRFRYKP---DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWL 75 (241)
T ss_dssp EEEEEEEEESST---TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHH
T ss_pred eEEEEEEEEeCC---CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCC---CCEEEECCEEecccchhhh
Confidence 789999999953 3457999999999999999999999999999999999999987 49999999986532
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHHHHH
Q 004932 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRR 255 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerqR 255 (723)
++.++||+|++.+|+ .||+||+.++. +. ...+++.++++..++.+.......+ ...++.||||||||
T Consensus 76 r~~i~~v~Q~~~lf~-~Ti~eNi~~~~----~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QR 147 (241)
T d2pmka1 76 RRQVGVVLQDNVLLN-RSIIDNISLAN----PG---MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQR 147 (241)
T ss_dssp HHHEEEECSSCCCTT-SBHHHHHCTTS----TT---CCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHH
T ss_pred hceEEEEecccccCC-ccccccccccC----cc---ccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHH
Confidence 346999999998875 69999996531 11 1344566777777776554443221 13467899999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHH
Q 004932 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (723)
Q Consensus 256 v~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (723)
|+|||||+.+|+|||||||||+||+.++..|++.|+++.+ |+|+|+++|++. . .+.||||++|++|+|++.|+++++
T Consensus 148 valARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~-~~~~D~i~vl~~G~Iv~~G~~~el 224 (241)
T d2pmka1 148 IAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS-T-VKNADRIIVMEKGKIVEQGKHKEL 224 (241)
T ss_dssp HHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG-G-GTTSSEEEEEETTEEEEEECHHHH
T ss_pred HhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHH-H-HHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999865 899999999874 4 477999999999999999999998
Q ss_pred HH
Q 004932 336 LQ 337 (723)
Q Consensus 336 ~~ 337 (723)
++
T Consensus 225 l~ 226 (241)
T d2pmka1 225 LS 226 (241)
T ss_dssp HH
T ss_pred Hh
Confidence 65
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-47 Score=392.14 Aligned_cols=217 Identities=21% Similarity=0.242 Sum_probs=177.0
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (723)
.++++||++.|+++ .++.+|+||||++++||++||+||||||||||+++|+|+++|+ +|+|.+||+++..
T Consensus 11 ~I~~~nvsf~Y~~~--~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~ 85 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR--PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRY 85 (251)
T ss_dssp CEEEEEEEECCTTS--TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHH
T ss_pred eEEEEEEEEECCCC--CCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCC---cCEEEECCEecchhhhHH
Confidence 59999999999542 2456999999999999999999999999999999999999997 4999999998642
Q ss_pred CCceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCC-------chHhhhhhcCCCCCCCCCHHH
Q 004932 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSL-------SDYANKLIGGHCYMKGLPCGE 252 (723)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~ig~~~~~~~LSGGe 252 (723)
.++.++||+|++.+|+ .||+||+.++... . .....+.+..+..++ .+-.++.++ ..+..|||||
T Consensus 86 ~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~----~--~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~--~~~~~LSGGq 156 (251)
T d1jj7a_ 86 LHRQVAAVGQEPQVFG-RSLQENIAYGLTQ----K--PTMEEITAAAVKSGAHSFISGLPQGYDTEVD--EAGSQLSGGQ 156 (251)
T ss_dssp HHHHEEEECSSCCCCS-SBHHHHHHCSCSS----C--CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCC--SSCSSSCHHH
T ss_pred HHHHhhhccccccccC-cchhhhhhhhhcc----c--chHHHHHHHHHHHHHHHHHHhccccchhhHh--ccCccCChhH
Confidence 1356999999999885 5999999764211 1 111222223333333 333444443 4567899999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004932 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 253 rqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
||||+|||||+.+|+|||||||||+||+.++.+|++.|+++.+ .|+|+|+++|+.. .+ +.||||++|++|+|++.|+
T Consensus 157 kQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~-~~-~~aDrI~vl~~G~iv~~Gt 234 (251)
T d1jj7a_ 157 RQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS-LV-EQADHILFLEGGAIREGGT 234 (251)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH-HH-HTCSEEEEEETTEEEEEEC
T ss_pred ceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999975 4899999888863 44 6799999999999999999
Q ss_pred hhHHHH
Q 004932 332 TLACLQ 337 (723)
Q Consensus 332 ~~~~~~ 337 (723)
++++++
T Consensus 235 ~~eLl~ 240 (251)
T d1jj7a_ 235 HQQLME 240 (251)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1e-47 Score=393.53 Aligned_cols=213 Identities=23% Similarity=0.332 Sum_probs=178.2
Q ss_pred EEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 004932 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (723)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (723)
++++||++.|++ .+.+|+||||.+++||++||+||||||||||+++|+|+++|++ |+|.+||+++.. .
T Consensus 2 le~knvsf~Y~~----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~---G~I~i~g~~i~~~~~~~~ 74 (242)
T d1mv5a_ 2 LSARHVDFAYDD----SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA---GEITIDGQPIDNISLENW 74 (242)
T ss_dssp EEEEEEEECSSS----SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSB---SCEEETTEESTTTSCSCC
T ss_pred EEEEEEEEECCC----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCC---CEEEECCEEeccccHHHH
Confidence 789999999952 3579999999999999999999999999999999999999974 999999998532 2
Q ss_pred CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCch-------HhhhhhcCCCCCCCCCHHHH
Q 004932 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-------YANKLIGGHCYMKGLPCGER 253 (723)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~ig~~~~~~~LSGGer 253 (723)
++.++||+|++.+|+. ||+||+.+... .. ...+.+.+.++..++.+ ..++.++ ..+..||||||
T Consensus 75 r~~i~~v~Q~~~lf~~-ti~eNi~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~g~~LSGGqk 145 (242)
T d1mv5a_ 75 RSQIGFVSQDSAIMAG-TIRENLTYGLE----GD--YTDEDLWQVLDLAFARSFVENMPDQLNTEVG--ERGVKISGGQR 145 (242)
T ss_dssp TTTCCEECCSSCCCCE-EHHHHTTSCTT----SC--SCHHHHHHHHHHHTCTTTTTSSTTGGGCEES--TTSBCCCHHHH
T ss_pred HhheEEEccccccCCc-chhhheecccc----cc--cchhhHHHHHHHHHhhhhhccCccccccccc--CCCCCCCHHHH
Confidence 4579999999998876 99999965321 11 12344556666665543 3344443 24568999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
|||+|||||+.+|+|||||||||+||+.++..|++.|++++ +|+|+|+++|++. .+ ..||||++|++|+|++.|+++
T Consensus 146 QRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~-~~-~~~D~i~vl~~G~iv~~G~~~ 222 (242)
T d1mv5a_ 146 QRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEKGQITGSGKHN 222 (242)
T ss_dssp HHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEETTEECCCSCHH
T ss_pred HHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHH-HH-HhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999997 4899999998874 45 569999999999999999999
Q ss_pred HHHH
Q 004932 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++++
T Consensus 223 eLl~ 226 (242)
T d1mv5a_ 223 ELVA 226 (242)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.1e-46 Score=388.20 Aligned_cols=217 Identities=23% Similarity=0.280 Sum_probs=183.4
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (723)
.++++||+++|++ ....+|+|||+.+++||++||+||||||||||+++|+|+++|+ +|+|.++|+++...
T Consensus 13 ~I~~~nvsf~Y~~---~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~ 86 (253)
T d3b60a1 13 DLEFRNVTFTYPG---REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLAS 86 (253)
T ss_dssp CEEEEEEEECSSS---SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHH
T ss_pred EEEEEEEEEEeCC---CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCC---ccEEEECCcccchhhhhh
Confidence 5999999999963 2356999999999999999999999999999999999999997 49999999986432
Q ss_pred -CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcC-----CCCCCCCCHHHHH
Q 004932 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERR 254 (723)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~-----~~~~~~LSGGerq 254 (723)
++.++||+|++.++. .|+++|+.++. +.. ..+++++++++..++.+..+++..| ...+.+|||||||
T Consensus 87 ~r~~i~~v~Q~~~l~~-~ti~~n~~~~~----~~~--~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQ 159 (253)
T d3b60a1 87 LRNQVALVSQNVHLFN-DTVANNIAYAR----TEE--YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQ 159 (253)
T ss_dssp HHHTEEEECSSCCCCS-SBHHHHHHTTT----TSC--CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHH
T ss_pred hhheEEEEeeccccCC-cchhhhhhhcC----ccc--CCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHH
Confidence 246999999998885 59999997641 111 1345677888888887665543321 1356789999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhH
Q 004932 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (723)
Q Consensus 255 Rv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (723)
||+|||||+.+|+|||||||||+||+.++..|++.|+++.+ ++|+|+++|++. .+ +.||+|++|++|+|++.|++++
T Consensus 160 RvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~~-~~~D~v~vl~~G~Iv~~G~~~e 236 (253)
T d3b60a1 160 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS-TI-EQADEIVVVEDGIIVERGTHSE 236 (253)
T ss_dssp HHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG-GT-TTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999975 889999888874 44 6799999999999999999999
Q ss_pred HHH
Q 004932 335 CLQ 337 (723)
Q Consensus 335 ~~~ 337 (723)
+++
T Consensus 237 Ll~ 239 (253)
T d3b60a1 237 LLA 239 (253)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.2e-46 Score=387.62 Aligned_cols=217 Identities=22% Similarity=0.292 Sum_probs=184.2
Q ss_pred ceEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 004932 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (723)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (723)
..++++||+++|++ ..+.+|+|||+++++||++||+||||||||||+++|+|+++|+ +|+|.++|+++...
T Consensus 15 g~I~~~nvsf~Y~~---~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~ 88 (255)
T d2hyda1 15 GRIDIDHVSFQYND---NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTG 88 (255)
T ss_dssp CCEEEEEEEECSCS---SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHH
T ss_pred CEEEEEEEEEEeCC---CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCcc---ccccccCCEEcccCCHH
Confidence 35999999999963 2357999999999999999999999999999999999999997 49999999986432
Q ss_pred --CceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCC-----CCCCCCCHHHH
Q 004932 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGER 253 (723)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~-----~~~~~LSGGer 253 (723)
++.++||+|++.+|+ .||+|||.++ .+. ..++++.++++..++.+...++..|. +.+..||||||
T Consensus 89 ~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g----~~~---~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~ 160 (255)
T d2hyda1 89 SLRNQIGLVQQDNILFS-DTVKENILLG----RPT---ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQK 160 (255)
T ss_dssp HHHHTEEEECSSCCCCS-SBHHHHHGGG----CSS---CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHH
T ss_pred HhhheeeeeeccccCCC-CCHHHHHhcc----CcC---CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHH
Confidence 357999999998885 6999999764 121 23456788899999877654443221 24568999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChh
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (723)
||++|||||+.+|+|||||||||+||+.++..|++.|+++.+ ++|+|+++|++. . ...||||++|++|++++.|+++
T Consensus 161 QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~-~-~~~~D~ii~l~~G~iv~~G~~~ 237 (255)
T d2hyda1 161 QRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS-T-ITHADKIVVIENGHIVETGTHR 237 (255)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG-G-TTTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-H-HHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999875 789999899874 4 4679999999999999999999
Q ss_pred HHHH
Q 004932 334 ACLQ 337 (723)
Q Consensus 334 ~~~~ 337 (723)
++++
T Consensus 238 eLl~ 241 (255)
T d2hyda1 238 ELIA 241 (255)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-43 Score=361.49 Aligned_cols=206 Identities=23% Similarity=0.320 Sum_probs=177.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC---
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY--- 181 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~--- 181 (723)
.++++||+. ..+|+||||+|++||++||+||||||||||+++|+|+.+ + +|+|.++|++.....
T Consensus 3 il~~~dv~~---------~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~-~---~G~I~~~g~~i~~~~~~~ 69 (231)
T d1l7vc_ 3 VMQLQDVAE---------STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-G---KGSIQFAGQPLEAWSATK 69 (231)
T ss_dssp EEEEEEECC---------TTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC-C---SSEEEESSSBGGGSCHHH
T ss_pred EEEEECccc---------CceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-C---ceEEEECCEECCcCCHHH
Confidence 578899853 247999999999999999999999999999999999864 4 399999998753321
Q ss_pred --ceEEEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHH
Q 004932 182 --GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (723)
Q Consensus 182 --~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA 259 (723)
...+|++|+.......++.+++.+.. .. ..+.+.++++++.+++.+..++.+. .|||||||||+||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~--~~~~~~~~~~~~~~~l~~~~~~~~~------~LSgG~~Qrv~iA 137 (231)
T d1l7vc_ 70 LALHRAYLSQQQTPPFATPVWHYLTLHQ----HD--KTRTELLNDVAGALALDDKLGRSTN------QLSGGEWQRVRLA 137 (231)
T ss_dssp HHHHEEEECSCCCCCSSCBHHHHHHHHC----SC--TTCHHHHHHHHHHTTCTTTTTSBGG------GCCHHHHHHHHHH
T ss_pred HHhhceeeeccccCCccccHHHHhhhcc----ch--hhHHHHHHHHHHhcCCHhHhCcChh------hcCHHHHHHHHHH
Confidence 24789999987777789999986532 11 1245678999999999988877554 9999999999999
Q ss_pred HHHhh-------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 004932 260 RELVM-------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (723)
Q Consensus 260 ~aL~~-------~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (723)
|+|++ +|+||||||||+|||+.++..+.++|++++++|+|||+++|+. .++.++|||+++|++|++++.|++
T Consensus 138 ~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl-~~~~~~~dri~vl~~G~iv~~G~~ 216 (231)
T d1l7vc_ 138 AVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRR 216 (231)
T ss_dssp HHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCH-HHHHHHCSBCCBEETTEECCCSBH
T ss_pred HHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEECCH
Confidence 99997 7799999999999999999999999999999999999988876 589999999999999999999999
Q ss_pred hHHH
Q 004932 333 LACL 336 (723)
Q Consensus 333 ~~~~ 336 (723)
++++
T Consensus 217 ~ev~ 220 (231)
T d1l7vc_ 217 EEVL 220 (231)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 9875
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.2e-42 Score=343.33 Aligned_cols=196 Identities=23% Similarity=0.308 Sum_probs=167.8
Q ss_pred eEEEEeEEEEEecccccccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 004932 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (723)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (723)
.++++||++.|. +++|+|||+++++||+++|+||||||||||+|+|+|+++|++ |+|.+||+++...+..+
T Consensus 2 ~lev~~ls~~y~------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~---G~I~~~g~~i~~~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLK---GEIIYNGVPITKVKGKI 72 (200)
T ss_dssp EEEEEEEEEESS------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSE---EEEEETTEEGGGGGGGE
T ss_pred eEEEEEEEEEeC------CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCC---CEEEECCEehhHhcCcE
Confidence 489999999872 469999999999999999999999999999999999999974 99999999876555679
Q ss_pred EEEcCCCccCCCCCHHHHHHHHHHhcCCCccchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 004932 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (723)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~ 264 (723)
+|++|+..++..+|++|++.+...+.... ..++.+.+.++.+++.+.. +.+ .+|||||||||+|||||+.
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~~------~~LSgG~~qrv~ia~al~~ 142 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVK---VNKNEIMDALESVEVLDLK-KKL------GELSQGTIRRVQLASTLLV 142 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCC---CCHHHHHHHHHHTTCCCTT-SBG------GGSCHHHHHHHHHHHHTTS
T ss_pred EEEeecccCCCCcCHHHHHHHHHHhcCCc---cCHHHHHHHHHHcCCcccc-ccc------CcCCCcHHHHHHHHHHHhc
Confidence 99999999999999999998876654221 1345577888888886543 333 4899999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeC
Q 004932 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (723)
Q Consensus 265 ~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (723)
+|+++||||||+|||+.++..+++.|+++.+++.++|+++||.. ++||++.+|++
T Consensus 143 ~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 143 NAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGGG
T ss_pred CCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhhheee
Confidence 99999999999999999999999999999876666777677753 57999998864
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.9e-42 Score=360.28 Aligned_cols=192 Identities=22% Similarity=0.310 Sum_probs=158.9
Q ss_pred ccceeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCCCCCHHH
Q 004932 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (723)
Q Consensus 122 ~~~iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (723)
.+++|+|||+.|++||++||+||||||||||+++|+|+++|+ +|+|.++| +++|++|++.+++. ||+|
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g--------~i~~v~Q~~~l~~~-tv~e 115 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG--------RVSFCSQFSWIMPG-TIKE 115 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS--------CEEEECSSCCCCSE-EHHH
T ss_pred CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCC---CcEEEECC--------EEEEEeccccccCc-eeec
Confidence 467999999999999999999999999999999999999997 49999998 38999999988875 9999
Q ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHcCCchH-------hhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 004932 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-------ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274 (723)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEP 274 (723)
|+.++. . ......+++++..++... .++.++ ..+..|||||||||+|||||+.+|+|||||||
T Consensus 116 ni~~~~----~----~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~--~~~~~LSgGqkQRv~lARaL~~~p~illLDEP 185 (281)
T d1r0wa_ 116 NIIFGV----S----YDEYRYKSVVKACQLQQDITKFAEQDNTVLG--EGGVTLSGGQRARISLARAVYKDADLYLLDSP 185 (281)
T ss_dssp HHTTTS----C----CCHHHHHHHHHHTTCHHHHTTSTTGGGCEEC--TTCTTSCHHHHHHHHHHHHHHSCCSEEEEESC
T ss_pred cccccc----c----ccchHHHHHHHHHHhHHHHHhchhhhhhhhh--hhccCCCHHHHHHHHHHHHHHhCccchhhcCc
Confidence 997642 1 122334555555555433 333332 34567999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChhHHHH
Q 004932 275 LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (723)
Q Consensus 275 TsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (723)
|++||+.++..+++.+......++|+|+++|++ +..+.||||++|++|++++.|+++++..
T Consensus 186 ts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 186 FGYLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp CCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHhhCCCEEEEEechH--HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999986544445688999988886 3457899999999999999999999864
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.55 E-value=3.4e-17 Score=156.64 Aligned_cols=155 Identities=15% Similarity=0.096 Sum_probs=98.0
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEc----CCCccCCCCCHHHHHHHHHHhcCCCc
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVE----RETTLIGSLTVREYLYYSALLQLPGF 214 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~----Q~~~l~~~lTV~E~l~~~~~~~~~~~ 214 (723)
++|+||||||||||+++|+|.+++. .|.+...|.+......+.++.. .........+.. ....
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 69 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFT----------SKKL 69 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGG---EEEEEEEEEC------CCEEEEEETTCCEEEEEETTCC----------CSSE
T ss_pred EEEECCCCcHHHHHHHHHHhcCCCC---cceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhh----------hhhh
Confidence 7999999999999999999999876 4899887754321111122111 110000000000 0000
Q ss_pred cchHHHHHHHHHHHcCCchHhhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 004932 215 FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294 (723)
Q Consensus 215 ~~~~~~~v~~~l~~lgL~~~~~~~ig~~~~~~~LSGGerqRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~ 294 (723)
. . ..+. +.....+|+|+++|.++++++..+|++|++|||.... .....+.+.|.++.
T Consensus 70 ~-~----------~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l 126 (178)
T d1ye8a1 70 V-G----------SYGV----------NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQIM 126 (178)
T ss_dssp E-T----------TEEE----------CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHHH
T ss_pred h-h----------hhhc----------CcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccc--hhhHHHHHHHHHHh
Confidence 0 0 0000 0011257899999999999999999999999985443 33455666666655
Q ss_pred H-cCCEEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 004932 295 S-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (723)
Q Consensus 295 ~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (723)
+ .+.++|+++|+. ....++|++..+.+|+++.-++
T Consensus 127 ~~~~~~il~~~h~~--~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 127 HDPNVNVVATIPIR--DVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp TCTTSEEEEECCSS--CCSHHHHHHHTCTTCEEEECCT
T ss_pred ccCCCEEEEEEccH--HHHHhhceEEEEeCCEEEEECC
Confidence 4 578888877765 3567899999999999986543
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.01 E-value=1e-09 Score=113.09 Aligned_cols=77 Identities=21% Similarity=0.169 Sum_probs=64.3
Q ss_pred CCCCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEE
Q 004932 245 MKGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICL 320 (723)
Q Consensus 245 ~~~LSGGerqRv~IA~aL~----~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~v 320 (723)
...+|+|||+.+.++..++ .+|.++++|||-++|||..+..+.+.|++..+ +.-+|+|||.| .+.+.+|+++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp--~~~~~~d~~~~ 293 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNK--IVMEAADLLHG 293 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCT--TGGGGCSEEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCH--HHHHhcccEEE
Confidence 4579999999988877643 46789999999999999999999999999875 56788999998 46788999966
Q ss_pred --EeCC
Q 004932 321 --LSNG 324 (723)
Q Consensus 321 --L~~G 324 (723)
+.+|
T Consensus 294 v~~~~g 299 (308)
T d1e69a_ 294 VTMVNG 299 (308)
T ss_dssp EEESSS
T ss_pred EEEeCC
Confidence 4566
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.66 E-value=1.6e-08 Score=107.90 Aligned_cols=74 Identities=14% Similarity=0.143 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHHHHH----hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCEEEEE
Q 004932 246 KGLPCGERRRVRIAREL----VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (723)
Q Consensus 246 ~~LSGGerqRv~IA~aL----~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (723)
..||||||.+++||..+ ..++++++||||+++||+..+..+.+.|++++..+.-+|+|||+| .+.+.+|+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCH--HHHHhcccEEEE
Confidence 56899999998887554 346779999999999999999999999999876566789989987 588999998755
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.00 E-value=2e-05 Score=77.31 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEEeCChHHHHhc
Q 004932 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVFGL 314 (723)
Q Consensus 254 qRv~IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvi~t~h~~~~~i~~~ 314 (723)
+|+.-....+.+..++++||+.+|=|+.....+.. .++.|.+.+..+++++|+. ++..+
T Consensus 103 ~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 103 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp HHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTC
T ss_pred HHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech--hhhhh
Confidence 33333333345667999999999999888776654 5555677788888888885 45554
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=6.2e-05 Score=74.15 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=34.3
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHc-CCEEEEEEeCC
Q 004932 262 LVMRPHVLFIDEPLYHLDSVSALLMMV-TLKKLAST-GCTLLFTINQS 307 (723)
Q Consensus 262 L~~~P~lLlLDEPTsgLD~~~~~~i~~-~L~~l~~~-g~tvi~t~h~~ 307 (723)
-+.+..++++||+.+|=|+.....+.. .++.+..+ +..+++++|+.
T Consensus 117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchH
Confidence 344567999999999999999988765 46677654 45677766654
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.54 E-value=0.00032 Score=69.88 Aligned_cols=34 Identities=24% Similarity=0.196 Sum_probs=26.8
Q ss_pred eeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHc
Q 004932 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 125 iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
-|+++.+=+.+|+++.|.|++|+|||||+.-|+-
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3444433367999999999999999999887764
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.09 E-value=0.0016 Score=64.31 Aligned_cols=46 Identities=15% Similarity=0.262 Sum_probs=33.1
Q ss_pred HHhhCCcEEEEeCCCCC-----CCHHHHHHHHHHHHHHHH-cCCEEEEEEeC
Q 004932 261 ELVMRPHVLFIDEPLYH-----LDSVSALLMMVTLKKLAS-TGCTLLFTINQ 306 (723)
Q Consensus 261 aL~~~P~lLlLDEPTsg-----LD~~~~~~i~~~L~~l~~-~g~tvi~t~h~ 306 (723)
.-..+|+++++|--++- -|......+++.|+.+++ .|.++|+++|.
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 34579999999965431 266677788888888874 58888886553
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.08 E-value=0.0002 Score=65.58 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=24.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
.|++++|.||+||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999998753
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.05 E-value=2.2e-05 Score=73.42 Aligned_cols=35 Identities=23% Similarity=0.080 Sum_probs=28.4
Q ss_pred eeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 125 iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-.++.++.+.+| +++|+|||||||||+|++|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 345666777666 99999999999999999997543
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.03 E-value=0.00012 Score=68.64 Aligned_cols=26 Identities=42% Similarity=0.852 Sum_probs=24.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
|.++.|+||||||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999988765
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.03 E-value=0.0028 Score=61.13 Aligned_cols=59 Identities=20% Similarity=0.233 Sum_probs=39.7
Q ss_pred hCCcEEEEeCCCC---CCCHHHHHHHHHHHHHHH-HcCCEEEEEEeCC---------hHHHHhcCCEEEEEe
Q 004932 264 MRPHVLFIDEPLY---HLDSVSALLMMVTLKKLA-STGCTLLFTINQS---------STEVFGLFDRICLLS 322 (723)
Q Consensus 264 ~~P~lLlLDEPTs---gLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~---------~~~i~~~~D~v~vL~ 322 (723)
.+|++++.|--+. +.+.......+..|.+++ +.+.+++++.|.. ...+.+++|-|+.|.
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred cCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 4789999997544 345555555555555555 5688888877742 123567899999885
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.00 E-value=0.00018 Score=70.12 Aligned_cols=34 Identities=35% Similarity=0.445 Sum_probs=25.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF 171 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~ 171 (723)
+|+.++++|+||+|||||+|.|.|...-. +|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~---T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC--------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhh---ccCcc
Confidence 58999999999999999999999865432 37665
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.98 E-value=0.00014 Score=66.36 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
+++|+|++|||||||++.|+..+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999987544
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.81 E-value=0.00028 Score=64.48 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=24.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
+|-++.|+|++||||||+.+.|+-.+.
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 699999999999999999999997653
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.00029 Score=64.31 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=24.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+.++.|+||+||||||+.+.|+..+
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999999999999865
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.77 E-value=0.01 Score=56.03 Aligned_cols=59 Identities=17% Similarity=0.142 Sum_probs=38.6
Q ss_pred hCCcEEEEeCCCCCC----CHHHH-HHHHHHHHHHHHcCCEEEEEEeCChH--------HHHhcCCEEEEEe
Q 004932 264 MRPHVLFIDEPLYHL----DSVSA-LLMMVTLKKLASTGCTLLFTINQSST--------EVFGLFDRICLLS 322 (723)
Q Consensus 264 ~~P~lLlLDEPTsgL----D~~~~-~~i~~~L~~l~~~g~tvi~t~h~~~~--------~i~~~~D~v~vL~ 322 (723)
.+|+++++|--+.-+ +.... ..+...++.+++.+.|++++.|+... .....+|-++.+.
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence 479999999766533 23333 33444445555779999998887642 3445788888774
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.73 E-value=0.00024 Score=65.27 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=26.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEEC
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN 173 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~ 173 (723)
.+++|+|++|||||||++.|...+...+..-|.|.-+
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d 38 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 38 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 3789999999999999998887665432223444433
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.57 E-value=0.00021 Score=69.85 Aligned_cols=34 Identities=35% Similarity=0.411 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEE
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF 171 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~ 171 (723)
+|+.++++|+||+|||||+|.|.|...-. +|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~---t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhh---hcccc
Confidence 58899999999999999999999864322 37765
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.57 E-value=0.00047 Score=63.10 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
..++|.||+|||||||.+.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999865
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.56 E-value=0.00049 Score=62.69 Aligned_cols=26 Identities=31% Similarity=0.599 Sum_probs=23.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
.+++.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999999875
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.45 E-value=0.00069 Score=60.55 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G 158 (723)
+++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998754
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.00075 Score=64.68 Aligned_cols=27 Identities=33% Similarity=0.671 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
.|.++.|+||||+|||||.+.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999999987654
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.41 E-value=0.00081 Score=61.28 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+|-.++|.||+||||||+.+.|+-.+
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 47789999999999999999999765
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.38 E-value=0.00063 Score=62.13 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=22.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRLPHS 163 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~~~ 163 (723)
.+.|.||+|+|||||++.++..+...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~ 28 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSS 28 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 58899999999999999999987543
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.33 E-value=0.00086 Score=60.63 Aligned_cols=25 Identities=40% Similarity=0.618 Sum_probs=22.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
.++.|.||+||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999997653
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.31 E-value=0.0052 Score=60.31 Aligned_cols=23 Identities=39% Similarity=0.686 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-+.+.||+|+|||+|.++|++..
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEecCCCCChhHHHHHHHHHc
Confidence 47899999999999999999754
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.30 E-value=0.00084 Score=60.93 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++|+||+||||||+.+.|+-.+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998654
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.30 E-value=0.00088 Score=59.81 Aligned_cols=23 Identities=39% Similarity=0.614 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47888999999999999999765
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.25 E-value=0.00092 Score=62.08 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
++||-|++|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999986543
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.23 E-value=0.00068 Score=63.06 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.|-++.|+|++||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998765
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.20 E-value=0.0012 Score=60.45 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=22.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
.+++|.|++||||||+.+.|+-.+.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999987654
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.14 E-value=0.0013 Score=68.58 Aligned_cols=25 Identities=40% Similarity=0.582 Sum_probs=21.8
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHH
Q 004932 133 ALPGTMTVIMGPAKSGKSTLLRAIA 157 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~ 157 (723)
+.++.+++|+|||||||||+|.+|+
T Consensus 22 f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 22 FGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3446699999999999999999985
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.12 E-value=0.0011 Score=62.08 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||+|.|.|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999964
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.91 E-value=0.0017 Score=60.64 Aligned_cols=25 Identities=16% Similarity=0.413 Sum_probs=21.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
..+.|+||||+|||||++.|....+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 5799999999999999999986543
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.90 E-value=0.0018 Score=60.55 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
..+++|+||+||||||+.+.|+-.
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.89 E-value=0.0017 Score=60.71 Aligned_cols=23 Identities=48% Similarity=0.795 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
++|+||||||||||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999987654
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.84 E-value=0.0013 Score=61.09 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+||+|++++|||||+|.|+|..
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998753
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.84 E-value=0.0021 Score=58.76 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.82 E-value=0.002 Score=61.99 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
+++|+|+.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.81 E-value=0.0021 Score=59.15 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||+|.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999964
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.76 E-value=0.0028 Score=58.91 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=25.6
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHcC
Q 004932 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
+=+.+|+++.|.||+|+|||||+.-++..
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 45779999999999999999999887754
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.76 E-value=0.013 Score=58.01 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+..-+.|.||+|+|||+|.++|++..
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcchhHHHHHHHHh
Confidence 44558899999999999999999865
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.72 E-value=0.0023 Score=58.37 Aligned_cols=22 Identities=55% Similarity=0.632 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+.|+|++||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999999765
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.70 E-value=0.0025 Score=59.78 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=22.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-.++.|+||+||||||+.+.|+..+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998754
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.69 E-value=0.0023 Score=60.08 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++|+||||||||||++.|+-..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999997654
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.68 E-value=0.0025 Score=60.59 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
++||-|++|||||||.+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999987653
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.65 E-value=0.0027 Score=58.17 Aligned_cols=22 Identities=41% Similarity=0.676 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.++|+|.+|+|||||+|.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.64 E-value=0.0025 Score=59.83 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++|||||||++.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.59 E-value=0.0022 Score=60.12 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+.+.++.|+||+||||||+.+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999998743
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.58 E-value=0.0027 Score=58.63 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-+||+|++|+|||||++.|+|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.57 E-value=0.0026 Score=58.37 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+.|+|++||||||+.+.|+-.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999998654
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.54 E-value=0.0028 Score=56.36 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36799999999999999999854
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.53 E-value=0.0032 Score=58.00 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|.+|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.52 E-value=0.0029 Score=56.38 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++|+|++|+|||||++.|++-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999874
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.48 E-value=0.0022 Score=59.23 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+||+|.+|+|||||+|.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999853
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.47 E-value=0.0034 Score=58.51 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++.|+||+||||||..+.|+-.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.45 E-value=0.0023 Score=58.40 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|||||||++.|.+-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998854
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.43 E-value=0.003 Score=58.87 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+.|+||+||||||+.+.|+-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999998643
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.41 E-value=0.0033 Score=56.36 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
++|+|.+|+|||||++.+.+...
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 88999999999999999988643
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.41 E-value=0.0034 Score=57.20 Aligned_cols=22 Identities=45% Similarity=0.585 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+.|+|++||||||+.+.|+..+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5677999999999999999765
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.37 E-value=0.0035 Score=57.55 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+.|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998653
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.30 E-value=0.0047 Score=57.44 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
+|=-+.|+||+||||||+.+.|+-.
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHHH
Confidence 4667889999999999999999953
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.28 E-value=0.0044 Score=55.65 Aligned_cols=23 Identities=52% Similarity=0.741 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|+|..
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999874
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.28 E-value=0.0041 Score=59.08 Aligned_cols=23 Identities=48% Similarity=0.615 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+++|.||+||||||+.+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999754
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.26 E-value=0.031 Score=58.55 Aligned_cols=51 Identities=22% Similarity=0.328 Sum_probs=37.0
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChHHHHhcCCE
Q 004932 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (723)
Q Consensus 258 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (723)
|..+|=++|++|+..|.. |+.++...+ +.+..|..|+.|.|-.+ .....+|
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~--a~~~~~R 270 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT--AVGAVTR 270 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS--SHHHHHH
T ss_pred HHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCc--hHhhhhh
Confidence 445666899999999987 666665544 45678999999999864 3344444
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.23 E-value=0.0044 Score=60.45 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=22.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
...+.|.||+|||||||.+.|++.+.
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45688999999999999999999764
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.21 E-value=0.0043 Score=56.81 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
++.|.|++||||||+.+.|+.++..
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6788999999999999999987643
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.16 E-value=0.0051 Score=56.82 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
+-+++.++|++||||||+.+-++-
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998853
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.16 E-value=0.28 Score=47.99 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
...+++|.|..|.|||||++.+..
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998864
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.14 E-value=0.005 Score=57.64 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+++++|.+|||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999654
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.10 E-value=0.0032 Score=64.44 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=27.1
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCCCCC
Q 004932 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~ 163 (723)
++.|.-+.|.|+.||||||||++|++..++.
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccc
Confidence 4456678999999999999999999998875
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.07 E-value=0.0025 Score=58.35 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|++++|||||+|.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999998854
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.04 E-value=0.0054 Score=57.88 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+++|.||+||||||+.+.|+..+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999865
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.02 E-value=0.0056 Score=56.52 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+.|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999754
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.93 E-value=0.0055 Score=55.33 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++|+|++|+|||||++.|.|..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 7899999999999999998853
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.87 E-value=0.0062 Score=56.12 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+.|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998653
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.83 E-value=0.0049 Score=57.43 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=22.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.-+++|-|+.||||||+++.|+..+
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998765
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.76 E-value=0.0064 Score=56.20 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+||+|+..||||||+|.|+|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999753
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.72 E-value=0.0066 Score=56.40 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 004932 138 MTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G 158 (723)
++||.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.71 E-value=0.0064 Score=55.88 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+.|+||+||||||..+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999998643
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.63 E-value=0.0023 Score=57.57 Aligned_cols=22 Identities=41% Similarity=0.533 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++|+|.+|+|||||+|.|+|..
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999853
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.59 E-value=0.0079 Score=56.27 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+||+||||||+.+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47799999999999999999753
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.59 E-value=0.0073 Score=56.82 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|++|+|||||++.|.+-.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.58 E-value=0.0091 Score=56.89 Aligned_cols=41 Identities=24% Similarity=0.274 Sum_probs=29.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~ 176 (723)
.|-++-|.|.||||||||.+.|.-.+.... ..-.+.++|..
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~~l~~~~-~~~~~~ldgD~ 63 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEHQLVRDR-RVHAYRLDGDN 63 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHH-CCCEEEECHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhc-CceEEEEcchH
Confidence 688999999999999999999985442100 01345666643
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.58 E-value=0.0072 Score=59.53 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999974
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.52 E-value=0.086 Score=51.90 Aligned_cols=30 Identities=40% Similarity=0.537 Sum_probs=26.1
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+=++.|.++-|-||+|||||||.-.++...
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~a 81 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQA 81 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHHH
Confidence 567789999999999999999998877643
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.50 E-value=0.0086 Score=55.21 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
+.|+||.||||||+.+.|+-.
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999864
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.46 E-value=0.0082 Score=54.53 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-++|+|.+|||||||++.|.+..
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999853
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.34 E-value=0.007 Score=58.00 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=23.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
+.+++|-|+-||||||+++.|+..+.
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 67899999999999999999998764
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.32 E-value=0.011 Score=56.35 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=24.5
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHc
Q 004932 131 GYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
+=+.+|+++.|.||+|||||||.--++-
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3477999999999999999999987764
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.27 E-value=0.0098 Score=53.73 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++++|++|+|||||++.+.+-
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999988764
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.03 E-value=0.013 Score=55.71 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
.|.+++|-|+-||||||+.+.|...+.
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999987653
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.91 E-value=0.01 Score=60.70 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
..-.+||.||+|||||||++.|...+
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998643
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.85 E-value=0.015 Score=56.07 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
..+.|.||+|+||||++++|+...
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999864
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.82 E-value=0.013 Score=61.63 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+||+|.+|+|||||+|.|.|..
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999964
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.82 E-value=0.014 Score=56.30 Aligned_cols=26 Identities=23% Similarity=0.524 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+.++.|.||+|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 46789999999999999999887543
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.81 E-value=0.015 Score=54.79 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=24.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
+|.+++|-|+-||||||+++.|+..+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987653
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.78 E-value=0.015 Score=54.96 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 004932 138 MTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G 158 (723)
++||.|+.||||||+.+.+.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998863
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.76 E-value=0.014 Score=59.10 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=31.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCCccCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG 195 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~ 195 (723)
++||-|++||||||+.+.|..++.... ....+..+.+|+.+.+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~---------------~~~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWP---------------EHRRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTST---------------TCCCEEEEEGGGGBCC
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhc---------------CCCceEEEeeeeeECC
Confidence 899999999999999999988764210 0123666777777664
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.76 E-value=0.014 Score=53.01 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++|+|++|+|||||++.+.+-.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHcCC
Confidence 7899999999999999987643
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.74 E-value=0.014 Score=52.94 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++++|++|+|||||++.+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 889999999999999988753
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.72 E-value=0.012 Score=53.41 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-++++|++|+|||||++.|.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3889999999999999999774
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.71 E-value=0.015 Score=55.56 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+.|.||+|+|||||+++|+..+
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 37899999999999999999754
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.68 E-value=0.014 Score=59.02 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
|+.-+.+.||+|+|||+|.|+|+...
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhhcc
Confidence 34456789999999999999999864
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.66 E-value=0.015 Score=55.80 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++||+|...||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999874
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.62 E-value=0.014 Score=52.75 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++|+|++|+|||||++.+.+-
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999988764
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.60 E-value=0.019 Score=54.48 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=25.0
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHcC
Q 004932 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
+=+.+|+++.|.|++|+|||||+.-++--
T Consensus 29 GGl~~G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 29 GGLESQSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 45789999999999999999998777643
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.55 E-value=0.021 Score=54.30 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=25.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
+|.+++|=|+-||||||+.+.|+-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 5999999999999999999999987654
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.48 E-value=0.02 Score=54.84 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.6
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHH
Q 004932 132 YALPGTMTVIMGPAKSGKSTLLRAIA 157 (723)
Q Consensus 132 ~v~~Ge~~aIlGpsGsGKSTLL~~L~ 157 (723)
=+.+|+++.|.||+|||||||.--++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 46799999999999999999977554
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.47 E-value=0.017 Score=55.35 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
.+.+.||+|+|||||.++|+..+.
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHhccC
Confidence 477999999999999999997654
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.36 E-value=0.018 Score=52.53 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++|+|++|+|||||++.+.+-
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 889999999999999987664
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.34 E-value=0.018 Score=51.83 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 004932 139 TVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G 158 (723)
++++|++|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987774
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.27 E-value=0.018 Score=55.20 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+.+.||+|+|||||.+++++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999854
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.26 E-value=0.022 Score=54.44 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=24.4
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHc
Q 004932 131 GYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
+=+.+|+++.|.|++|||||||.-.++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3477999999999999999999887764
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.17 E-value=0.011 Score=59.29 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
++||.|+|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 899999999999999999887653
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.16 E-value=0.018 Score=51.91 Aligned_cols=22 Identities=27% Similarity=0.301 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-++|+|++|+|||||++.+.+-
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999998753
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.12 E-value=0.023 Score=51.44 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++|+|.+|+|||||++-+.+-
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999987763
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.09 E-value=0.023 Score=52.24 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++|+|++|+|||||++.+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999998864
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.05 E-value=0.042 Score=50.77 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
.|.-+.|.|+||+|||||.-.|..
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 588899999999999999987764
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.04 E-value=0.018 Score=58.53 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
..-.++|.||.|||||||+..|...
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999864
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.02 E-value=0.026 Score=51.26 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 004932 139 TVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G 158 (723)
++|+|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987765
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.01 E-value=0.02 Score=51.60 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++++|.+|+|||||++.+.+-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.00 E-value=0.024 Score=53.51 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++||.|..||||||..+++..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 7899999999999999998743
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.98 E-value=0.022 Score=54.15 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+.|-||+|+|||||+++|+..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999999753
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.92 E-value=0.025 Score=51.20 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++|+|.+|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 7899999999999999998864
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.87 E-value=0.024 Score=51.60 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++|+|++|+|||||++.+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999987754
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.86 E-value=0.022 Score=51.67 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-++|+|.+|+|||||++-+.+-
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999987653
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.80 E-value=0.022 Score=51.63 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++|+|.+|+|||||++.+.+-
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998864
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.79 E-value=0.03 Score=53.21 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=21.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+.+++++||+|+||||.+-=|+...
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 47799999999999998866666544
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.72 E-value=0.026 Score=50.87 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++|+|.+|+|||||++-+.+..
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999988753
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.71 E-value=0.024 Score=55.26 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCC
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.-+.|.||+|+|||+|.++|+...
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhcc
Confidence 347899999999999999999753
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.69 E-value=0.026 Score=51.81 Aligned_cols=21 Identities=24% Similarity=0.588 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++|+|.+|+|||||++-+.+-
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.63 E-value=0.046 Score=50.50 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
.|.-+.|.|+||+|||||.-.|..+
T Consensus 13 ~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 5888999999999999998877653
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.54 E-value=0.028 Score=50.36 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++|+|..|+|||||++-+.+-
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.53 E-value=0.028 Score=50.65 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++|+|.+|+|||||++.+.+-
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999888764
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.52 E-value=0.033 Score=53.47 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=23.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCCC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
...+.|.||+|+||||+++.|+..+..
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhc
Confidence 357899999999999999999987653
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.51 E-value=0.037 Score=50.27 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++|+|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 7899999999999999998864
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.51 E-value=0.034 Score=54.55 Aligned_cols=25 Identities=36% Similarity=0.612 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
..-+.+.||+|+|||+|.+.|+..+
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHHHc
Confidence 4457899999999999999999754
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.47 E-value=0.026 Score=50.60 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++|+|..|+|||||++.+.+-
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.44 E-value=0.018 Score=52.76 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 004932 138 MTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G 158 (723)
-++++|++|+|||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998754
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.33 E-value=0.03 Score=51.02 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++++|..|+|||||++.+.+-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.26 E-value=0.041 Score=49.93 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.9
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+||.+++|-|+=|||||||.|.++.-+
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence 3589999999999999999999988654
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.21 E-value=0.033 Score=50.20 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++|+|.+|+|||||++-+.+-
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.14 E-value=0.037 Score=51.55 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
+++|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999997654
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.09 E-value=0.03 Score=51.96 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++|+|+.|+|||||++.+.+-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 889999999999999987754
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.08 E-value=0.035 Score=50.01 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++|+|.+|+|||||++-+.+-
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987753
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.03 E-value=0.031 Score=50.85 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++|+|.+|+|||||++.+.+-
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988764
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.01 E-value=0.038 Score=55.08 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++||-|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 8999999999999999887644
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.85 E-value=0.034 Score=50.39 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 004932 139 TVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G 158 (723)
++++|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 88999999999999998775
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.84 E-value=0.038 Score=52.39 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+.+-||+|+||||++++|+..+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHH
Confidence 6789999999999999998643
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=91.80 E-value=0.047 Score=50.75 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHcCCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
+||+|.-.+|||||++.|.|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 79999999999999999998643
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=91.77 E-value=0.044 Score=51.95 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=21.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
...+++++||+|+||||.+-=|+..+.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356889999999999988777776543
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.74 E-value=0.039 Score=50.55 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-++|+|.+|+|||||++-+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988764
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=91.74 E-value=0.026 Score=51.22 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-+.|+|++|+|||||++.+.+-
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998754
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.69 E-value=0.026 Score=51.32 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=8.6
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++|+|..|+|||||++.+++-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999877753
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.63 E-value=0.041 Score=49.61 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++|+|.+|+|||||++-+.+-
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999977654
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=91.62 E-value=0.043 Score=52.31 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=20.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+..+++++||+|+||||.+-=|+-+.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999988766566543
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.61 E-value=0.038 Score=50.17 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-++|+|.+|+|||||++-+.+-
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999987753
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=91.58 E-value=0.065 Score=49.08 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=21.9
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcC
Q 004932 134 LPGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-.|.-+.|.|+||+|||||.-.|..+
T Consensus 13 ~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 13 VYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 35888999999999999998776654
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.54 E-value=0.043 Score=49.53 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++|+|++|+|||||++-+.+-
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998864
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.47 E-value=0.044 Score=49.48 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++++|.+|+|||||++-+.+-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998854
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=91.45 E-value=0.022 Score=57.74 Aligned_cols=26 Identities=38% Similarity=0.581 Sum_probs=23.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCCC
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGRLPH 162 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~~~ 162 (723)
.-+.|.||.|+|||||+|.+++++|+
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 35899999999999999999999876
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.26 E-value=0.048 Score=49.31 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++++|.+|+|||||++-+.+-
T Consensus 7 i~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 678999999999999987763
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.23 E-value=0.051 Score=53.10 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
-+.|.||+|+|||+|+++++...
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eeEEecCCCCCchHHHHHHHHHh
Confidence 37899999999999999999864
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.18 E-value=0.03 Score=50.84 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=17.5
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++|+|++|+|||||++.+.+-
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999977653
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.16 E-value=0.049 Score=49.13 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 004932 139 TVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G 158 (723)
++|+|+.|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997654
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.02 E-value=0.051 Score=51.38 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+.+-||+|+|||||+++|+..+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHh
Confidence 6799999999999999999753
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.01 E-value=0.052 Score=49.04 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 004932 138 MTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G 158 (723)
-++|+|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998765
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.81 E-value=0.057 Score=51.31 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=20.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
-.+++++||+|+||||.+-=|+-+..
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999887766675543
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.80 E-value=0.047 Score=52.27 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=27.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCCh
Q 004932 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (723)
Q Consensus 265 ~P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (723)
+.+++++||.-. |....+..+.+.+.... ....+|++++++.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSC
T ss_pred CceEEEeccccc-cccccchhhhccccccc-ccccceeeecccc
Confidence 567999999864 77777776666665432 2345677777653
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.77 E-value=0.056 Score=49.41 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-++++|.+|+|||||++-+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999977664
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.73 E-value=0.049 Score=53.99 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=26.0
Q ss_pred eeeceeeEEeCCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 125 iL~~vs~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+|+.++..| -+++|+||-++|||||||.|.|..
T Consensus 24 ~l~~~~~~v---~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 24 ILSAITQPM---VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHTCCSBE---EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHcCCCCE---EEEEEECCCCCCHHHHHHHHcCCC
Confidence 455554322 489999999999999999999964
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=90.66 E-value=0.042 Score=53.06 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++.|.||+|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45667999999999999999765
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.65 E-value=0.058 Score=49.57 Aligned_cols=19 Identities=37% Similarity=0.746 Sum_probs=17.6
Q ss_pred EEEECCCCCcHHHHHHHHH
Q 004932 139 TVIMGPAKSGKSTLLRAIA 157 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~ 157 (723)
+.|+|.+|+|||||++-+.
T Consensus 5 ivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999884
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=90.56 E-value=0.06 Score=51.17 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=16.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
...+++++||+|+||||.+-=|+-..
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999998766666543
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.43 E-value=0.057 Score=49.55 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 004932 139 TVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G 158 (723)
++|+|.+|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 89999999999999988765
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.26 E-value=0.058 Score=53.45 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++++|.-+||||||+|+|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 38899999999999999999964
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.22 E-value=0.067 Score=48.01 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++|+|.+|+|||||++-+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999987754
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.20 E-value=0.063 Score=53.50 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.++|+|.-+||||||+|+|+|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999964
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.09 E-value=0.064 Score=53.82 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+||+|-+.+|||||+|+|+|-.
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999864
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.06 E-value=0.072 Score=52.95 Aligned_cols=27 Identities=37% Similarity=0.530 Sum_probs=24.0
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHHcC
Q 004932 133 ALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 133 v~~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
+..|+-.+|+|++|+|||||+..|+.-
T Consensus 40 igrGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 40 IGRGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp CBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred ccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence 347999999999999999999998863
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.05 E-value=0.056 Score=57.23 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
=+.++||+|+|||-|.|.||+.+.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999764
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.79 E-value=0.068 Score=49.23 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++|+|.+|+|||||++.+.+-
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999877654
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.72 E-value=0.1 Score=51.25 Aligned_cols=29 Identities=34% Similarity=0.464 Sum_probs=24.8
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHcC
Q 004932 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
+=+.+|.++-|.||+|||||||+-.++.-
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~ 77 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAA 77 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHHH
Confidence 56779999999999999999997766653
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.58 E-value=0.078 Score=50.30 Aligned_cols=20 Identities=30% Similarity=0.645 Sum_probs=17.8
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 004932 138 MTVIMGPAKSGKSTLLRAIA 157 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~ 157 (723)
-+.|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999774
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=89.57 E-value=0.089 Score=50.15 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 004932 138 MTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G 158 (723)
++||.|+-||||||..+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999965
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=89.37 E-value=0.072 Score=53.04 Aligned_cols=22 Identities=45% Similarity=0.555 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
-+||+|.+.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4999999999999999999975
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.33 E-value=0.094 Score=51.82 Aligned_cols=24 Identities=29% Similarity=0.363 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHH---HcCCC
Q 004932 138 MTVIMGPAKSGKSTLLRAI---AGRLP 161 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L---~G~~~ 161 (723)
-+||+|+.|||||||...| +|...
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~ 34 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH 34 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccc
Confidence 4899999999999999998 45544
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.26 E-value=0.084 Score=48.18 Aligned_cols=20 Identities=35% Similarity=0.650 Sum_probs=17.5
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 004932 139 TVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G 158 (723)
++++|.+|+|||||++-+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999986654
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.25 E-value=0.097 Score=52.66 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
|...+.++||+|+|||.|.+.|+-.+
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchhHHHHHHHHhhc
Confidence 44578899999999999999999864
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.21 E-value=0.087 Score=49.54 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 004932 139 TVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G 158 (723)
+||+|..+||||||++.|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 89999999999999999964
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.51 E-value=0.13 Score=48.06 Aligned_cols=27 Identities=33% Similarity=0.532 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
|.=-+||+|.-.+|||||++.|.|...
T Consensus 7 p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 7 PEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCeEEEEEEccCCcHHHHHHHHHhhhc
Confidence 333589999999999999999998654
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=88.44 E-value=0.098 Score=51.44 Aligned_cols=20 Identities=40% Similarity=0.564 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 004932 138 MTVIMGPAKSGKSTLLRAIA 157 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~ 157 (723)
-+||+|+.|+|||||...|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 47999999999999999994
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.80 E-value=0.13 Score=48.89 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 137 TMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 137 e~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
.+++|=|+-||||||+++.|+-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4789999999999999999997654
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=87.12 E-value=0.14 Score=50.37 Aligned_cols=24 Identities=33% Similarity=0.317 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
-+||+|-+.+|||||+++|++-..
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~~ 27 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAGI 27 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC-
T ss_pred eEEEECCCCCCHHHHHHHHHCCCC
Confidence 489999999999999999997643
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.05 E-value=0.13 Score=46.74 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
+.|+|.+|+|||||++-+..-
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999988654
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=86.92 E-value=0.15 Score=52.37 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=25.1
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHHcCCC
Q 004932 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 134 ~~Ge~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
..+..+.+.||+|+||||+.+.|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999999753
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.85 E-value=0.15 Score=46.08 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGRLPHS 163 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~~~~~ 163 (723)
+.|+|..|+|||||++-+..-..|+
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~t 29 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEAG 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhhCCCCC
Confidence 7899999999999999886543343
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.06 E-value=0.2 Score=49.18 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=23.1
Q ss_pred eEEeCCcEEEEECCCCCcHHHHHHHHHc
Q 004932 131 GYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 131 ~~v~~Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
+=++.|.++-|.||+|+|||||+-.++.
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHH
Confidence 3566899999999999999999655554
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.04 E-value=0.14 Score=48.73 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~ 159 (723)
++.|.|.=||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6889999999999999998874
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=85.74 E-value=0.19 Score=50.68 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
+.-++.+.||+|+|||.|.+.|++..
T Consensus 122 ~~g~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 122 ASGMVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp ESEEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHHh
Confidence 34466778999999999999999864
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=85.44 E-value=0.2 Score=47.26 Aligned_cols=48 Identities=6% Similarity=0.151 Sum_probs=38.9
Q ss_pred hhCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCEEEEEEeCChHH
Q 004932 263 VMRPHVLFIDEPLYHL-DSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310 (723)
Q Consensus 263 ~~~P~lLlLDEPTsgL-D~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~ 310 (723)
..+.++|++|+--.=. +...+..+..++..+.+.|+.+|+|+..+..+
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~ 143 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQK 143 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGG
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchh
Confidence 5578999999874432 57888889999999999999999998887543
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=84.64 E-value=0.23 Score=46.30 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 004932 139 TVIMGPAKSGKSTLLRAIAGR 159 (723)
Q Consensus 139 ~aIlGpsGsGKSTLL~~L~G~ 159 (723)
+||+|.-++|||||++.|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 799999999999999999874
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.53 E-value=0.28 Score=48.16 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.0
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHHc
Q 004932 132 YALPGTMTVIMGPAKSGKSTLLRAIAG 158 (723)
Q Consensus 132 ~v~~Ge~~aIlGpsGsGKSTLL~~L~G 158 (723)
.+-.|+..+|.|++|+|||||+.-++.
T Consensus 64 pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 64 PYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred cccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 345799999999999999999777754
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=84.26 E-value=0.21 Score=51.67 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=18.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHH
Q 004932 136 GTMTVIMGPAKSGKSTLLRAIA 157 (723)
Q Consensus 136 Ge~~aIlGpsGsGKSTLL~~L~ 157 (723)
-..+.|+|++|||||++++.|.
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHH
T ss_pred cceEEEEeCCCCcHHHHHHHHH
Confidence 4569999999999999987544
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=83.09 E-value=0.3 Score=45.60 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
.+.+.||+|+||||+.+.++..+
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l 48 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYL 48 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHhc
Confidence 58899999999999999998854
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=82.38 E-value=0.35 Score=46.03 Aligned_cols=42 Identities=21% Similarity=0.225 Sum_probs=27.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEeCChH
Q 004932 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 309 (723)
Q Consensus 266 P~lLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~ 309 (723)
.+++|+||.=. |+...+..+++.|.+.. .+..+|++++++..
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~-~~~~~il~tn~~~~ 157 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPP-EHVKFLLATTDPQK 157 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCC-TTEEEEEEESCGGG
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCC-CCeEEEEEcCCccc
Confidence 46999999954 77777766665554321 24566676766543
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=82.22 E-value=0.33 Score=48.58 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
|.-.+.++||+|+|||.|.+.|+-.+
T Consensus 52 p~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 52 PIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchHHHHHHHHHHHh
Confidence 44467899999999999999999865
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=81.70 E-value=0.36 Score=47.25 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
-+.|+||+|.|||+++.-|+.++.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHHH
Confidence 577999999999999999998754
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=80.65 E-value=0.43 Score=44.37 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 004932 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (723)
Q Consensus 138 ~~aIlGpsGsGKSTLL~~L~G~~~ 161 (723)
-..|+||+|.|||++..-|+.++.
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHHH
Confidence 478999999999999999998653
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=80.48 E-value=0.4 Score=49.01 Aligned_cols=25 Identities=28% Similarity=0.602 Sum_probs=21.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcCC
Q 004932 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (723)
Q Consensus 135 ~Ge~~aIlGpsGsGKSTLL~~L~G~~ 160 (723)
++. +.++||+|+|||-|.|.||...
T Consensus 68 ~~n-iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 68 KSN-ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred Ccc-eeeeCCCCccHHHHHHHHHhhc
Confidence 343 6677999999999999999875
|