Query 004933
Match_columns 723
No_of_seqs 148 out of 198
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 10:14:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004933.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004933hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ypd_A Probable JMJC domain-co 100.0 2E-134 6E-139 1080.2 15.1 359 290-720 16-377 (392)
2 4gjz_A Lysine-specific demethy 99.2 8.5E-12 2.9E-16 122.7 4.3 35 632-666 198-232 (235)
3 3k2o_A Bifunctional arginine d 99.2 1.3E-10 4.3E-15 124.4 12.1 81 631-713 252-332 (336)
4 2yu1_A JMJC domain-containing 99.0 6.1E-09 2.1E-13 115.3 17.4 84 631-716 262-345 (451)
5 3k3o_A PHF8, PHD finger protei 99.0 4.7E-09 1.6E-13 113.6 15.9 83 631-719 213-299 (371)
6 3kv4_A PHD finger protein 8; e 99.0 4.4E-09 1.5E-13 116.3 14.3 83 632-719 298-383 (447)
7 3kv9_A JMJC domain-containing 98.9 1.1E-08 3.9E-13 111.5 15.4 87 631-719 241-327 (397)
8 3kv5_D JMJC domain-containing 98.9 5.9E-09 2E-13 116.5 13.2 86 632-719 333-418 (488)
9 3al5_A HTYW5, JMJC domain-cont 98.9 1.1E-09 3.8E-14 116.6 4.9 42 632-673 237-278 (338)
10 3pua_A GRC5, PHD finger protei 98.8 3.4E-08 1.2E-12 107.6 14.5 85 631-718 240-325 (392)
11 3d8c_A Hypoxia-inducible facto 98.7 2.9E-09 9.8E-14 114.0 2.0 41 631-671 257-298 (349)
12 3pur_A Lysine-specific demethy 97.5 7.1E-05 2.4E-09 84.1 5.0 51 632-682 363-413 (528)
13 2xxz_A Lysine-specific demethy 97.4 0.00021 7.3E-09 76.4 7.0 86 570-674 233-318 (332)
14 3avr_A Lysine-specific demethy 97.1 0.00048 1.6E-08 77.7 6.6 88 570-676 292-379 (531)
15 4ask_A Lysine-specific demethy 96.5 0.0023 7.9E-08 71.6 6.0 131 570-719 267-416 (510)
16 3dxt_A JMJC domain-containing 96.2 0.0057 2E-07 65.9 6.9 97 569-676 205-303 (354)
17 3opt_A DNA damage-responsive t 95.4 0.022 7.5E-07 61.8 7.1 95 570-675 249-345 (373)
18 1vrb_A Putative asparaginyl hy 95.3 0.028 9.5E-07 60.0 7.6 80 632-716 215-304 (342)
19 2ox0_A JMJC domain-containing 95.1 0.03 1E-06 61.0 6.9 94 572-676 228-321 (381)
20 1iym_A EL5; ring-H2 finger, ub 92.8 0.056 1.9E-06 41.6 2.6 32 8-46 21-52 (55)
21 3lrq_A E3 ubiquitin-protein li 92.2 0.037 1.3E-06 48.5 0.9 34 8-47 35-68 (100)
22 2opk_A Hypothetical protein; p 92.1 0.046 1.6E-06 48.6 1.5 24 637-660 75-98 (112)
23 1x4j_A Ring finger protein 38; 91.9 0.057 1.9E-06 44.5 1.8 33 7-46 37-69 (75)
24 1yhf_A Hypothetical protein SP 91.6 0.085 2.9E-06 45.8 2.6 59 607-672 56-114 (115)
25 3ng2_A RNF4, snurf, ring finge 91.5 0.072 2.4E-06 42.9 1.9 35 6-47 27-61 (71)
26 2pfw_A Cupin 2, conserved barr 91.4 0.068 2.3E-06 46.5 1.8 58 607-672 50-107 (116)
27 3ht1_A REMF protein; cupin fol 91.3 0.11 3.8E-06 46.7 3.2 41 632-672 76-116 (145)
28 2ea6_A Ring finger protein 4; 91.3 0.04 1.4E-06 44.0 0.2 33 7-46 33-65 (69)
29 3fjs_A Uncharacterized protein 91.2 0.085 2.9E-06 46.9 2.3 58 608-672 53-110 (114)
30 3lag_A Uncharacterized protein 91.2 0.069 2.4E-06 46.7 1.6 24 637-660 61-84 (98)
31 2ecm_A Ring finger and CHY zin 91.1 0.064 2.2E-06 41.1 1.2 33 7-46 20-52 (55)
32 2xeu_A Ring finger protein 4; 91.1 0.04 1.4E-06 43.3 -0.0 34 7-47 21-54 (64)
33 2fc7_A ZZZ3 protein; structure 90.9 0.12 4E-06 44.8 2.8 36 121-156 19-59 (82)
34 2q30_A Uncharacterized protein 90.8 0.075 2.6E-06 45.5 1.4 39 631-671 69-108 (110)
35 3h8u_A Uncharacterized conserv 90.6 0.12 4.2E-06 45.6 2.7 39 634-672 78-116 (125)
36 1v70_A Probable antibiotics sy 90.5 0.12 4E-06 43.3 2.3 38 634-671 66-103 (105)
37 4e2g_A Cupin 2 conserved barre 90.0 0.25 8.4E-06 43.6 4.1 59 607-672 57-115 (126)
38 2b8m_A Hypothetical protein MJ 89.9 0.13 4.3E-06 45.1 2.1 41 633-673 63-106 (117)
39 2kiz_A E3 ubiquitin-protein li 89.9 0.12 4.3E-06 41.5 1.9 32 8-46 29-60 (69)
40 1tot_A CREB-binding protein; z 89.6 0.11 3.7E-06 41.4 1.3 33 123-156 6-39 (52)
41 4ayc_A E3 ubiquitin-protein li 89.6 0.15 5.1E-06 47.1 2.4 29 12-47 69-97 (138)
42 2djb_A Polycomb group ring fin 89.6 0.075 2.6E-06 43.4 0.4 32 9-47 29-60 (72)
43 2ozj_A Cupin 2, conserved barr 89.5 0.13 4.4E-06 44.8 1.9 36 630-665 71-106 (114)
44 1juh_A Quercetin 2,3-dioxygena 89.5 0.14 4.8E-06 54.5 2.5 40 636-676 292-332 (350)
45 2fqp_A Hypothetical protein BP 89.4 0.17 5.7E-06 43.3 2.4 26 635-660 59-84 (97)
46 2l0b_A E3 ubiquitin-protein li 89.2 0.16 5.6E-06 43.6 2.3 32 8-46 55-86 (91)
47 3d82_A Cupin 2, conserved barr 88.8 0.21 7E-06 42.1 2.6 27 636-662 69-95 (102)
48 2gu9_A Tetracenomycin polyketi 88.7 0.24 8.1E-06 42.2 2.9 41 632-672 59-99 (113)
49 1o5u_A Novel thermotoga mariti 88.7 0.14 4.8E-06 45.3 1.5 31 634-664 67-97 (101)
50 2xlg_A SLL1785 protein, CUCA; 88.6 0.27 9.4E-06 50.0 3.8 77 606-685 58-163 (239)
51 3kgz_A Cupin 2 conserved barre 88.6 0.25 8.7E-06 46.8 3.3 41 632-672 79-119 (156)
52 2dip_A Zinc finger SWIM domain 88.4 0.15 5.2E-06 45.6 1.6 36 120-155 28-65 (98)
53 1chc_A Equine herpes virus-1 r 88.4 0.17 5.9E-06 40.5 1.7 32 9-47 19-50 (68)
54 3ibm_A Cupin 2, conserved barr 88.3 0.23 7.9E-06 47.3 2.9 61 606-672 71-132 (167)
55 2d8t_A Dactylidin, ring finger 88.3 0.16 5.5E-06 41.3 1.5 28 13-47 32-59 (71)
56 2ect_A Ring finger protein 126 88.1 0.23 8E-06 40.8 2.4 28 12-46 34-61 (78)
57 3h7j_A Bacilysin biosynthesis 87.5 0.2 6.9E-06 50.2 2.0 60 607-672 162-221 (243)
58 2ecy_A TNF receptor-associated 87.4 0.15 5.1E-06 40.8 0.8 29 12-46 31-59 (66)
59 2y43_A E3 ubiquitin-protein li 87.2 0.21 7.1E-06 43.2 1.7 32 9-47 36-67 (99)
60 2ozi_A Hypothetical protein RP 87.1 0.18 6.2E-06 44.3 1.2 23 638-660 62-84 (98)
61 2e5r_A Dystrobrevin alpha; ZZ 87.1 0.23 7.8E-06 40.9 1.7 33 124-156 12-46 (63)
62 2csy_A Zinc finger protein 183 86.6 0.12 4.1E-06 43.1 -0.2 30 12-48 31-60 (81)
63 2ep4_A Ring finger protein 24; 86.3 0.25 8.5E-06 40.3 1.6 27 13-46 35-61 (74)
64 2ckl_B Ubiquitin ligase protei 86.1 0.35 1.2E-05 45.7 2.7 35 8-48 67-101 (165)
65 1y9q_A Transcriptional regulat 85.9 0.26 8.8E-06 47.1 1.7 43 630-673 139-181 (192)
66 2ckl_A Polycomb group ring fin 85.8 0.31 1.1E-05 42.8 2.1 32 9-47 29-60 (108)
67 2i45_A Hypothetical protein; n 85.8 0.38 1.3E-05 41.4 2.6 37 635-674 67-103 (107)
68 1lr5_A Auxin binding protein 1 85.8 0.29 1E-05 45.6 2.0 25 635-659 88-112 (163)
69 2ecj_A Tripartite motif-contai 85.7 0.29 1E-05 37.7 1.6 28 12-43 31-58 (58)
70 1v87_A Deltex protein 2; ring- 85.5 0.26 9E-06 43.5 1.4 40 7-48 54-93 (114)
71 1g25_A CDK-activating kinase a 85.4 0.22 7.4E-06 39.7 0.8 30 12-47 24-53 (65)
72 2egp_A Tripartite motif-contai 85.2 0.15 5.2E-06 41.8 -0.3 36 12-48 28-64 (79)
73 4ap4_A E3 ubiquitin ligase RNF 85.1 0.37 1.3E-05 42.9 2.2 34 7-47 25-58 (133)
74 3l2h_A Putative sugar phosphat 85.0 0.36 1.2E-05 44.9 2.2 41 632-672 83-124 (162)
75 1jm7_B BARD1, BRCA1-associated 84.9 0.4 1.4E-05 42.9 2.3 26 13-47 40-65 (117)
76 3jzv_A Uncharacterized protein 84.7 0.39 1.3E-05 46.0 2.3 30 631-660 87-116 (166)
77 2oa2_A BH2720 protein; 1017534 84.6 0.51 1.7E-05 43.5 3.0 25 636-660 89-113 (148)
78 2ecl_A Ring-box protein 2; RNF 84.6 0.56 1.9E-05 39.5 3.0 32 8-46 42-73 (81)
79 3cew_A Uncharacterized cupin p 84.6 0.39 1.3E-05 42.5 2.1 30 631-660 62-91 (125)
80 1vj2_A Novel manganese-contain 84.1 0.43 1.5E-05 42.6 2.2 47 608-660 65-111 (126)
81 4axo_A EUTQ, ethanolamine util 83.8 0.53 1.8E-05 45.0 2.7 60 608-674 80-139 (151)
82 2ecw_A Tripartite motif-contai 83.7 0.14 4.7E-06 42.3 -1.2 36 12-48 35-70 (85)
83 2yur_A Retinoblastoma-binding 83.5 0.23 7.7E-06 40.9 0.0 28 13-45 33-60 (74)
84 4ap4_A E3 ubiquitin ligase RNF 82.7 0.43 1.5E-05 42.4 1.6 33 7-46 90-122 (133)
85 1x82_A Glucose-6-phosphate iso 82.2 0.67 2.3E-05 45.0 2.9 40 633-672 117-156 (190)
86 3lwc_A Uncharacterized protein 82.1 0.64 2.2E-05 42.0 2.5 37 634-672 76-113 (119)
87 2o8q_A Hypothetical protein; c 82.1 0.73 2.5E-05 41.2 2.9 61 607-673 59-120 (134)
88 2ysl_A Tripartite motif-contai 81.5 0.52 1.8E-05 38.0 1.5 31 13-47 37-67 (73)
89 3fl2_A E3 ubiquitin-protein li 81.3 0.75 2.6E-05 41.3 2.7 31 12-48 68-98 (124)
90 4i4a_A Similar to unknown prot 81.0 1.4 4.8E-05 38.7 4.3 56 630-689 67-124 (128)
91 2ecn_A Ring finger protein 141 80.8 0.2 6.8E-06 40.4 -1.2 28 12-46 30-57 (70)
92 3bcw_A Uncharacterized protein 80.8 0.58 2E-05 42.8 1.7 30 637-666 89-118 (123)
93 2bnm_A Epoxidase; oxidoreducta 80.2 0.74 2.5E-05 43.9 2.4 45 608-658 137-185 (198)
94 3rns_A Cupin 2 conserved barre 80.2 0.63 2.2E-05 46.2 1.9 48 608-661 170-218 (227)
95 2ecv_A Tripartite motif-contai 80.1 0.19 6.4E-06 41.5 -1.7 35 13-48 36-70 (85)
96 2ct2_A Tripartite motif protei 80.1 0.55 1.9E-05 39.1 1.2 33 12-48 35-67 (88)
97 4h7l_A Uncharacterized protein 80.0 0.34 1.2E-05 46.8 -0.1 47 606-657 60-108 (157)
98 3i7d_A Sugar phosphate isomera 79.7 1.1 3.7E-05 42.3 3.3 60 608-672 61-122 (163)
99 1y3t_A Hypothetical protein YX 79.2 0.85 2.9E-05 46.9 2.6 50 630-680 252-301 (337)
100 3l11_A E3 ubiquitin-protein li 79.2 0.65 2.2E-05 41.1 1.5 30 13-48 32-61 (115)
101 1qwr_A Mannose-6-phosphate iso 79.0 0.67 2.3E-05 49.0 1.7 17 639-655 162-178 (319)
102 1fi2_A Oxalate oxidase, germin 78.8 1.3 4.5E-05 43.1 3.7 39 635-673 119-157 (201)
103 4ic3_A E3 ubiquitin-protein li 78.6 0.7 2.4E-05 38.2 1.4 25 12-46 40-64 (74)
104 1zx5_A Mannosephosphate isomer 78.2 0.73 2.5E-05 48.4 1.7 17 639-655 162-178 (300)
105 2f4p_A Hypothetical protein TM 77.8 1.3 4.4E-05 41.0 3.1 35 637-671 89-123 (147)
106 1jm7_A BRCA1, breast cancer ty 77.6 0.56 1.9E-05 40.9 0.6 33 12-48 37-69 (112)
107 1o4t_A Putative oxalate decarb 76.1 0.93 3.2E-05 41.0 1.6 31 630-660 91-121 (133)
108 1t1h_A Gspef-atpub14, armadill 75.7 0.77 2.6E-05 37.7 0.8 30 12-47 24-53 (78)
109 3dpl_R Ring-box protein 1; ubi 74.9 0.96 3.3E-05 40.5 1.3 32 8-46 67-98 (106)
110 3ztg_A E3 ubiquitin-protein li 74.5 0.83 2.8E-05 38.7 0.8 30 13-47 31-60 (92)
111 1z6u_A NP95-like ring finger p 74.5 0.83 2.8E-05 43.0 0.8 33 12-50 94-126 (150)
112 3rns_A Cupin 2 conserved barre 74.4 1.1 3.6E-05 44.6 1.6 56 605-666 51-106 (227)
113 1rc6_A Hypothetical protein YL 74.0 0.97 3.3E-05 45.6 1.3 48 608-660 196-243 (261)
114 1bor_A Transcription factor PM 73.9 0.83 2.9E-05 35.7 0.6 26 12-47 22-47 (56)
115 2wfp_A Mannose-6-phosphate iso 73.4 1.2 3.9E-05 48.7 1.7 16 639-654 244-259 (394)
116 2pyt_A Ethanolamine utilizatio 73.3 1.7 5.8E-05 40.1 2.6 35 632-666 90-124 (133)
117 3hct_A TNF receptor-associated 73.2 0.59 2E-05 41.8 -0.5 29 12-46 34-62 (118)
118 3h7j_A Bacilysin biosynthesis 73.0 1.4 4.9E-05 44.0 2.2 48 607-660 50-98 (243)
119 1y3t_A Hypothetical protein YX 72.6 1.5 5.3E-05 45.0 2.4 48 630-678 80-127 (337)
120 1rmd_A RAG1; V(D)J recombinati 71.5 0.78 2.7E-05 40.7 -0.1 30 12-47 39-68 (116)
121 1pmi_A PMI, phosphomannose iso 71.4 1.4 4.7E-05 48.9 1.7 16 639-654 270-285 (440)
122 1sef_A Conserved hypothetical 71.1 1.4 4.9E-05 44.8 1.7 31 630-660 216-246 (274)
123 1wgm_A Ubiquitin conjugation f 70.5 1.7 5.7E-05 38.2 1.8 29 12-46 38-66 (98)
124 1juh_A Quercetin 2,3-dioxygena 70.5 1.5 5.2E-05 46.5 1.8 69 607-681 66-139 (350)
125 2vpv_A Protein MIF2, MIF2P; nu 70.4 2.1 7.2E-05 41.5 2.6 29 632-660 125-153 (166)
126 2d40_A Z3393, putative gentisa 69.1 2.4 8.1E-05 45.2 3.0 40 632-671 136-175 (354)
127 4e2q_A Ureidoglycine aminohydr 68.8 1.6 5.5E-05 45.3 1.5 29 630-658 220-248 (266)
128 4diq_A Lysine-specific demethy 68.6 3 0.0001 46.9 3.7 42 630-671 223-266 (489)
129 1j58_A YVRK protein; cupin, de 68.1 1.7 6E-05 46.0 1.6 27 634-660 300-326 (385)
130 2xdv_A MYC-induced nuclear ant 68.0 3 0.0001 46.1 3.5 31 629-659 193-223 (442)
131 2ysj_A Tripartite motif-contai 67.2 0.59 2E-05 36.8 -1.7 27 13-43 37-63 (63)
132 2vqa_A SLL1358 protein, MNCA; 67.0 3.3 0.00011 43.3 3.5 53 636-689 279-331 (361)
133 4a0k_B E3 ubiquitin-protein li 66.7 1.2 4E-05 40.9 0.0 28 12-46 82-109 (117)
134 1sq4_A GLXB, glyoxylate-induce 66.1 2 6.9E-05 44.2 1.6 31 630-660 103-133 (278)
135 3knv_A TNF receptor-associated 65.4 0.92 3.1E-05 42.4 -1.0 30 12-47 47-76 (141)
136 3nw4_A Gentisate 1,2-dioxygena 64.4 3.1 0.00011 45.1 2.7 29 632-660 139-167 (368)
137 3bu7_A Gentisate 1,2-dioxygena 63.9 3.1 0.00011 45.5 2.6 28 632-659 329-356 (394)
138 1e4u_A Transcriptional repress 62.9 2.5 8.4E-05 35.7 1.3 30 13-48 32-61 (78)
139 1dgw_A Canavalin; duplicated s 62.9 3.4 0.00012 39.6 2.4 27 634-660 82-108 (178)
140 1sfn_A Conserved hypothetical 62.7 2.6 9E-05 42.3 1.7 32 629-660 198-229 (246)
141 1zrr_A E-2/E-2' protein; nicke 62.1 5.5 0.00019 38.9 3.7 37 636-672 123-159 (179)
142 1sfn_A Conserved hypothetical 59.9 3 0.0001 41.9 1.5 31 631-661 82-112 (246)
143 2yho_A E3 ubiquitin-protein li 59.3 3.5 0.00012 34.7 1.6 26 12-47 34-59 (79)
144 2kre_A Ubiquitin conjugation f 59.0 3.1 0.0001 36.7 1.2 28 12-46 45-72 (100)
145 3es1_A Cupin 2, conserved barr 59.0 4.4 0.00015 39.4 2.4 35 636-671 119-153 (172)
146 2vqa_A SLL1358 protein, MNCA; 58.9 2.7 9.1E-05 44.0 0.9 25 635-659 96-120 (361)
147 2ct7_A Ring finger protein 31; 58.8 5.3 0.00018 34.2 2.7 39 115-153 16-59 (86)
148 2d5f_A Glycinin A3B4 subunit; 58.3 4.2 0.00014 45.6 2.4 34 639-672 117-150 (493)
149 4b29_A Dimethylsulfoniopropion 58.3 3.3 0.00011 41.9 1.4 46 608-659 149-195 (217)
150 1vr3_A Acireductone dioxygenas 57.6 6.4 0.00022 39.0 3.4 37 636-672 128-164 (191)
151 2ct0_A Non-SMC element 1 homol 56.7 5.8 0.0002 33.5 2.5 34 9-47 29-62 (74)
152 2e9q_A 11S globulin subunit be 55.6 4.3 0.00015 45.1 2.0 35 639-673 131-165 (459)
153 3vk6_A E3 ubiquitin-protein li 54.5 2.5 8.6E-05 38.1 -0.1 34 4-46 13-46 (101)
154 3hcs_A TNF receptor-associated 54.4 2.3 7.8E-05 40.2 -0.4 29 12-46 34-62 (170)
155 2ecg_A Baculoviral IAP repeat- 54.3 5.3 0.00018 32.8 1.9 25 12-46 41-65 (75)
156 4e2q_A Ureidoglycine aminohydr 54.3 4 0.00014 42.3 1.4 24 636-659 110-133 (266)
157 1sef_A Conserved hypothetical 54.1 4.5 0.00015 41.2 1.7 31 630-660 97-127 (274)
158 1rc6_A Hypothetical protein YL 53.4 5.9 0.0002 39.8 2.4 30 631-660 95-124 (261)
159 1sq4_A GLXB, glyoxylate-induce 52.5 4.3 0.00015 41.7 1.2 32 629-660 224-255 (278)
160 2kr4_A Ubiquitin conjugation f 52.2 2.7 9.3E-05 35.7 -0.3 28 12-46 30-57 (85)
161 2d40_A Z3393, putative gentisa 51.1 7.1 0.00024 41.6 2.7 27 632-658 303-329 (354)
162 3c3v_A Arachin ARAH3 isoform; 51.0 6.1 0.00021 44.6 2.2 34 640-673 131-164 (510)
163 3bu7_A Gentisate 1,2-dioxygena 48.8 7.8 0.00027 42.3 2.6 27 631-657 158-184 (394)
164 1fxz_A Glycinin G1; proglycini 48.5 7 0.00024 43.6 2.2 30 637-666 115-144 (476)
165 2arc_A ARAC, arabinose operon 47.9 11 0.00038 33.8 3.1 30 630-659 51-80 (164)
166 3cjx_A Protein of unknown func 47.5 8.7 0.0003 36.9 2.4 33 640-672 85-126 (165)
167 2y0o_A Probable D-lyxose ketol 45.8 8.5 0.00029 37.7 2.1 39 636-676 120-158 (175)
168 2cr8_A MDM4 protein; ZF-ranbp 45.2 8.9 0.00031 30.6 1.7 27 6-32 9-43 (53)
169 3fyb_A Protein of unknown func 44.8 7.3 0.00025 35.1 1.3 12 18-29 41-52 (104)
170 2vje_A E3 ubiquitin-protein li 44.0 5.6 0.00019 31.9 0.4 29 12-46 26-54 (64)
171 1vq8_T 50S ribosomal protein L 43.4 6.5 0.00022 36.4 0.8 42 608-651 14-55 (120)
172 2c2l_A CHIP, carboxy terminus 42.9 7.2 0.00025 38.8 1.1 30 12-47 224-253 (281)
173 2kwj_A Zinc finger protein DPF 41.9 23 0.00077 31.8 4.1 46 3-54 18-66 (114)
174 1uij_A Beta subunit of beta co 41.5 9.3 0.00032 41.7 1.8 46 608-658 65-114 (416)
175 2c6a_A Ubiquitin-protein ligas 41.2 9.6 0.00033 29.8 1.3 24 8-31 13-44 (46)
176 1fxz_A Glycinin G1; proglycini 41.0 12 0.0004 41.8 2.5 67 605-671 352-419 (476)
177 2lbm_A Transcriptional regulat 41.0 32 0.0011 32.6 5.1 37 4-44 71-115 (142)
178 3j21_U 50S ribosomal protein L 40.3 7.9 0.00027 35.9 0.8 40 609-650 18-57 (121)
179 2d8s_A Cellular modulator of i 39.1 18 0.00062 30.5 2.9 27 16-46 41-67 (80)
180 1v5n_A PDI-like hypothetical p 37.5 12 0.0004 32.6 1.4 31 123-153 47-77 (89)
181 2ea7_A 7S globulin-1; beta bar 36.0 16 0.00053 40.3 2.5 28 634-661 102-130 (434)
182 3c3v_A Arachin ARAH3 isoform; 35.6 16 0.00054 41.3 2.5 102 568-671 351-453 (510)
183 2o1q_A Putative acetyl/propion 33.3 16 0.00054 33.8 1.7 55 605-665 58-115 (145)
184 2cav_A Protein (canavalin); vi 33.2 21 0.0007 39.5 2.8 27 635-661 128-155 (445)
185 2o35_A Hypothetical protein DU 33.1 11 0.00037 34.0 0.5 12 18-29 42-53 (105)
186 1j58_A YVRK protein; cupin, de 32.8 21 0.00073 37.6 2.8 48 607-660 95-147 (385)
187 3a1b_A DNA (cytosine-5)-methyl 32.6 34 0.0012 33.1 3.9 46 4-55 87-134 (159)
188 2d5f_A Glycinin A3B4 subunit; 31.5 12 0.00041 42.0 0.6 119 568-690 346-465 (493)
189 2yw8_A RUN and FYVE domain-con 30.9 27 0.00092 29.6 2.6 35 119-154 15-52 (82)
190 3avr_A Lysine-specific demethy 30.4 41 0.0014 38.2 4.7 36 120-155 455-495 (531)
191 2ct7_A Ring finger protein 31; 30.3 20 0.0007 30.5 1.8 30 8-38 43-75 (86)
192 2vje_B MDM4 protein; proto-onc 29.8 13 0.00043 29.7 0.3 29 12-46 25-53 (63)
193 2jmo_A Parkin; IBR, E3 ligase, 29.2 35 0.0012 28.8 3.0 34 120-153 22-66 (80)
194 3htk_C E3 SUMO-protein ligase 28.5 22 0.00074 37.1 1.9 34 9-47 195-230 (267)
195 1z2q_A LM5-1; membrane protein 28.2 42 0.0014 28.5 3.4 36 118-154 16-54 (84)
196 1zbd_B Rabphilin-3A; G protein 27.7 36 0.0012 31.8 3.1 72 81-156 17-91 (134)
197 3kgl_A Cruciferin; 11S SEED gl 27.7 23 0.00079 39.5 2.1 34 640-673 150-183 (466)
198 3qac_A 11S globulin SEED stora 26.8 28 0.00097 38.8 2.5 34 640-673 135-168 (465)
199 3nw4_A Gentisate 1,2-dioxygena 26.0 33 0.0011 37.1 2.9 30 633-662 315-344 (368)
200 1x4u_A Zinc finger, FYVE domai 25.9 33 0.0011 29.1 2.3 35 119-153 10-46 (84)
201 2vrw_B P95VAV, VAV1, proto-onc 24.3 39 0.0013 35.9 3.0 37 120-156 354-393 (406)
202 3j20_Y 30S ribosomal protein S 24.1 34 0.0012 26.8 1.8 25 122-146 18-46 (50)
203 2ea5_A Cell growth regulator w 23.8 35 0.0012 27.6 2.0 25 12-46 31-55 (68)
204 2zet_C Melanophilin; complex, 23.4 20 0.00068 34.3 0.4 35 122-156 67-104 (153)
205 3ql9_A Transcriptional regulat 23.0 30 0.001 32.3 1.5 40 4-44 65-109 (129)
206 1wim_A KIAA0161 protein; ring 22.4 9.5 0.00032 32.5 -1.8 36 9-45 21-60 (94)
207 2hqh_E Restin; beta/BETA struc 21.3 25 0.00086 24.4 0.5 9 122-130 2-10 (26)
208 3zyq_A Hepatocyte growth facto 21.2 2E+02 0.0069 28.5 7.4 61 94-154 129-197 (226)
209 3ebr_A Uncharacterized RMLC-li 21.1 37 0.0013 32.2 1.8 35 638-672 81-124 (159)
210 2pv0_B DNA (cytosine-5)-methyl 21.0 63 0.0021 35.3 3.8 45 5-55 102-148 (386)
211 2zkr_t 60S ribosomal protein L 20.8 14 0.00046 35.3 -1.3 42 608-651 20-61 (145)
212 1uij_A Beta subunit of beta co 20.5 45 0.0015 36.4 2.6 34 638-672 310-343 (416)
213 2pzo_E CAP-Gly domain-containi 20.0 27 0.00093 26.7 0.5 12 120-131 17-28 (42)
No 1
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-134 Score=1080.23 Aligned_cols=359 Identities=32% Similarity=0.553 Sum_probs=273.0
Q ss_pred CCcCchhhHHHHHHHhhcCCCEEEEecccccCCCCCChhHHHHHHhhhccccccccCCceeEeecCCCceeecchhhhhc
Q 004933 290 TKIQEDEELFRFQKHWIKGEPVIVRNVLDKVTGLSWEPMVMWRALCENVDSEVSSKMSEVKAIDCLASCEVEISTRQFFK 369 (723)
Q Consensus 290 ~d~~~~~~~~~FQ~hW~kGePVIV~~vl~~~s~lsW~P~~mwra~~e~~~~~~~~~~~~vkaidCl~~~ev~i~~~~Ff~ 369 (723)
.|..+.+|++|||+||++|||||||||++++++++|+|++||++|++. .+++|||++|++++|++++||+
T Consensus 16 ~d~~~~~n~~~Fq~hW~~GePViVs~V~~~~~~~~W~Pe~~~~~~gd~----------~~~lidC~~~~~~~i~v~~Ff~ 85 (392)
T 2ypd_A 16 KDYKNSSNWKLFKECWKQGQPAVVSGVHKKMNISLWKAESISLDFGDH----------QADLLNCKDSIISNANVKEFWD 85 (392)
T ss_dssp CCTTCTTHHHHHHHHHTTTCCEEECCHHHHSCGGGGSHHHHHHHHTTS----------CCCCEETTTCCBCSCCHHHHHH
T ss_pred cCCCCcccHHHHHHHHhCCCcEEEechhhhCcCCccCHHHHHHHhcCc----------eeeeeeCCCCccccCcHHHHhh
Confidence 455556899999999999999999999999999999999999998642 3678999999999999999999
Q ss_pred cccCCcc---CCCCccceeecCCCCCCCchhhhcccchHHHHhCCCCcCcCCCCCccccccccCCCCCCCCCCCcchhhc
Q 004933 370 GYTQGRT---YDNFWPEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIA 446 (723)
Q Consensus 370 Gf~~gr~---~~~~wp~mLKLKDWPps~~F~e~lP~h~~efi~~LP~~eYt~pr~G~LNLAs~LP~~~lkPDLGPK~YIA 446 (723)
||++++. +++|||+|||||||||+++|+++||+||+|||++|||||||||+ |+|||||+||+++++||||||||||
T Consensus 86 Gf~~~~~r~~~~~g~p~~LKLKDWPp~~~F~e~lP~~~~df~~~LPlpEYt~p~-G~LNLAs~LP~~~~kPDLGPK~YiA 164 (392)
T 2ypd_A 86 GFEEVSKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYCNPE-GKFNLASHLPGFFVRPDLGPRLCSA 164 (392)
T ss_dssp TSSBGGGC------CCCCEEECSSSBTHHHHHHSHHHHHHHHHHCSSHHHHSTT-CTTCCTTTSCGGGCC---CCEEEEE
T ss_pred hccccccCCcCCCCCcceeeecCCCChHHHHHHhHHHHHHHHHcCCchHhhCCC-ccchHHHhCCCCCCCCCCCcchhhh
Confidence 9999753 57999999999999999999999999999999999999999985 9999999999999999999999999
Q ss_pred cccccccCCCCCccccccchhhhhHhhhhccccccchHhHHHHHHHHHHHHHhhhhhhhccCCCcccccCCCCCCCCCCC
Q 004933 447 YGVAEELGRGDSVTKLHCDMSDAVNILTHTEEVLLTEEQHSAVERLKKEHRAQDLKENLVQDGMDESIEEPNSDNNKEDT 526 (723)
Q Consensus 447 YG~~eelg~gdSvTkLH~DmSDAVNIL~ht~ev~~~~~~~~~i~~l~~~~~~q~~~e~~~~~~~~~~~~~~~~~~~~~d~ 526 (723)
||+++++|+|+|||||||||||||||||||+.++... ..... ...+++.+++..+.+
T Consensus 165 YG~~~~~~~~~gvT~LH~DmsDaVNiL~h~~~~~~~~-~~~~~-~~l~~~~~~~~d~~~--------------------- 221 (392)
T 2ypd_A 165 YGVVAAKDHDIGTTNLHIEVSDVVNILVYVGIAKGNG-ILSKA-GILKKFEEEDLDDIL--------------------- 221 (392)
T ss_dssp CCSTTTTCTTCCSEEEEECSSEEEEEEEEEECCBCTT-CCCHH-HHHHHHHTSCCCHHH---------------------
T ss_pred cCcchhcccCCCcceeeeehhhhhhhhheecccCccc-cchhh-hhhhhhhhccccHHH---------------------
Confidence 9999999999999999999999999999998654322 11111 112222211110000
Q ss_pred ccccccccCCCCCCcccccccccccccCCccccCCCCCCcCCCCccEeEeecCCChHHHHHHHHHHHHhhccccCCCCCc
Q 004933 527 DVSEINDSELLPSGIRGEFKMSRDEMQGTAFTCPHSEGTMVESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQ 606 (723)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GAlWdIFrreDv~KLreyL~kh~~Ef~h~~~~p~~~ 606 (723)
. .++.+ ..+.+||+||||||||++|||+||++|++||. .++.+
T Consensus 222 -~----------------~r~~~----------------~~~~~GAlW~Ifr~~D~~klr~~L~~~~~e~~----~~~~~ 264 (392)
T 2ypd_A 222 -R----------------KRLKD----------------SSEIPGALWHIYAGKDVDKIREFLQKISKEQG----LEVLP 264 (392)
T ss_dssp -H----------------HHHTC----------------TTCCEEEEEEEECGGGHHHHHHHHHHHHHHHC---------
T ss_pred -h----------------hhccC----------------CCCCCCceeeeeCHhhHHHHHHHHHHHHHhhC----CCccC
Confidence 0 00000 13578999999999999999999999999984 46788
Q ss_pred ccCCcCCcceecCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceeeccccCccchHHHHHHHHHhhc
Q 004933 607 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRL 686 (723)
Q Consensus 607 v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLteEfR~ 686 (723)
+.||||||+||||++||++|+|||||+||||+|++|||||||||||||||||+||||||+||||||||++|++||+|||+
T Consensus 265 ~~dPihdq~~yL~~~~r~~L~ee~gv~~~~~~Q~~GeavfiPaG~~HQV~Nl~~~i~va~df~spe~~~~c~~lt~E~R~ 344 (392)
T 2ypd_A 265 EHDPIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVESFHLTQELRL 344 (392)
T ss_dssp -CCHHHHTCCCCCHHHHHHHHHHHCCCCEEEEEETTCEEEECTTCEEEEEESSEEEEEEEEECCGGGHHHHHHHHHHC--
T ss_pred CCCcCcCCCEEecHHHHHHHHHhcCCeeEEEEEcCCCEEEecCCCHHHHhcccchhhHhhhhcChhhHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccchhhhhHhHHHHHHHHHHHHHHHhhcc
Q 004933 687 LPKNHRAREDKLEIKKMILYAVAQAIKDANSLIP 720 (723)
Q Consensus 687 Lp~~H~~keDkLevkkm~l~A~~~av~~l~~l~~ 720 (723)
|| +|++||||||||||+||||++||++|++...
T Consensus 345 l~-~~~~~edkLqvk~m~~~av~~av~~l~~~~~ 377 (392)
T 2ypd_A 345 LK-EEINYDDKLQVKNILYHAVKEMVRALKIHED 377 (392)
T ss_dssp ----------------------------------
T ss_pred cc-hhhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 96 6999999999999999999999999997643
No 2
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*
Probab=99.18 E-value=8.5e-12 Score=122.72 Aligned_cols=35 Identities=29% Similarity=0.284 Sum_probs=32.0
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceeec
Q 004933 632 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAV 666 (723)
Q Consensus 632 VepWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAl 666 (723)
+.++.++|.+||++|||+|..|||+||..||.|..
T Consensus 198 ~~~~~~~l~pGD~LyiP~gW~H~V~~l~~sisvn~ 232 (235)
T 4gjz_A 198 APFLSCILSPGEILFIPVKYWHYVRALDLSFSVSF 232 (235)
T ss_dssp CCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEE
T ss_pred CCcEEEEECCCCEEEeCCCCcEEEEECCCEEEEEE
Confidence 57899999999999999999999999999887753
No 3
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*
Probab=99.15 E-value=1.3e-10 Score=124.40 Aligned_cols=81 Identities=28% Similarity=0.334 Sum_probs=62.3
Q ss_pred CccceEEEeecCceeEecCCCccccccccccceeeccccCccchHHHHHHHHHhhcCCcccccchhhhhHhHHHHHHHHH
Q 004933 631 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEIKKMILYAVAQ 710 (723)
Q Consensus 631 GVepWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLteEfR~Lp~~H~~keDkLevkkm~l~A~~~ 710 (723)
+..++.++|.+||++|||+|-.|||+||..||.|+..|++|.|+...+++|-+ .-|+-++.-..+|+-+.=-++++.+
T Consensus 252 ~~~~~~~~l~pGd~l~iP~gw~H~v~~~~~sisv~~~f~~~~nl~~~~~~~~~--~~p~~~~~~~~~~~~~~p~~~~~~~ 329 (336)
T 3k2o_A 252 EFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVR--GRPKLSRKWYRILKQEHPELAVLAD 329 (336)
T ss_dssp GGCCEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECCTTTHHHHHHHHHH--HCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cCceEEEEECCCCEEEeCCCCcEEEecCCCeEEEEcccCCcccHHHHHHHHHh--hChHHHHHHHHHHHHhCchHHHHHh
Confidence 46889999999999999999999999999999999999999999999999953 3344333333344444444555555
Q ss_pred HHH
Q 004933 711 AIK 713 (723)
Q Consensus 711 av~ 713 (723)
+|.
T Consensus 330 ~~~ 332 (336)
T 3k2o_A 330 SVD 332 (336)
T ss_dssp HHH
T ss_pred hcC
Confidence 443
No 4
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A
Probab=99.00 E-value=6.1e-09 Score=115.34 Aligned_cols=84 Identities=15% Similarity=0.081 Sum_probs=65.3
Q ss_pred CccceEEEeecCceeEecCCCccccccccccceeeccccCccchHHHHHHHHHhhcCCcccccchhhhhHhHHHHHHHHH
Q 004933 631 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEIKKMILYAVAQ 710 (723)
Q Consensus 631 GVepWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLteEfR~Lp~~H~~keDkLevkkm~l~A~~~ 710 (723)
.-+++.++|..||++|||+|.-|||.||..||-|+..|++.-|+..-+++++==+++-... +-.=--...|++||+..
T Consensus 262 ~~~~~~v~l~pGE~LfIPsGWwH~V~nledsIait~NF~~~~nl~~~l~~~~~E~~~~v~~--~~~~p~f~~~~w~~~~~ 339 (451)
T 2yu1_A 262 VSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYNIEDRTRVPN--KFRYPFYYEMCWYVLER 339 (451)
T ss_dssp SSCCEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEECCSSSHHHHHHHHHHHHHTTCCT--TSSCTTHHHHHHHHHHH
T ss_pred cccceEEEECCCcEEEeCCCceEEEecCCCeEEEeeeeCCcccHHHHHHHHHHHHhhCCCc--cccCccHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999988876222221111 11112235899999988
Q ss_pred HHHHHH
Q 004933 711 AIKDAN 716 (723)
Q Consensus 711 av~~l~ 716 (723)
-++.|.
T Consensus 340 ~~~~~~ 345 (451)
T 2yu1_A 340 YVYCIT 345 (451)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 877663
No 5
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*
Probab=98.99 E-value=4.7e-09 Score=113.58 Aligned_cols=83 Identities=22% Similarity=0.322 Sum_probs=68.7
Q ss_pred CccceEEEeecCceeEecCCCccccccccccceeeccccCccchHHHHHHHH-HhhcCCcccccchhhh---hHhHHHHH
Q 004933 631 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK-EFRLLPKNHRAREDKL---EIKKMILY 706 (723)
Q Consensus 631 GVepWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLte-EfR~Lp~~H~~keDkL---evkkm~l~ 706 (723)
..+++.++|..||++|||+|..|||.||..||-|+..|++..|+...++..+ |-|. . -.+|. ...+|++|
T Consensus 213 ~~~~~ev~l~pGEtLfIPsGWwH~V~nledSIai~~NFl~~~nl~~~l~~~~~E~~~-~-----~~~~f~fp~F~~~~w~ 286 (371)
T 3k3o_A 213 VDKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEIEKRL-S-----TADLFRFPNFETICWY 286 (371)
T ss_dssp SSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHHH-C---------CCCTTHHHHHHH
T ss_pred cCceEEEEECCCcEEEeCCCCeEEEecCCCeEEECCcccchhhHHHHHHHHHHHHhc-C-----CCcccccccHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999877 4332 1 12222 35789999
Q ss_pred HHHHHHHHHHhhc
Q 004933 707 AVAQAIKDANSLI 719 (723)
Q Consensus 707 A~~~av~~l~~l~ 719 (723)
+++..+..|+.+.
T Consensus 287 ~~~~~~~~~~~~~ 299 (371)
T 3k3o_A 287 VGKHILDIFRGLR 299 (371)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988763
No 6
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=98.96 E-value=4.4e-09 Score=116.32 Aligned_cols=83 Identities=19% Similarity=0.292 Sum_probs=70.2
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceeeccccCccchHHHHHHHHHhhcCCcccccchhhh---hHhHHHHHHH
Q 004933 632 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKL---EIKKMILYAV 708 (723)
Q Consensus 632 VepWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLteEfR~Lp~~H~~keDkL---evkkm~l~A~ 708 (723)
.+++.++|..||++|||+|..|||.||..||-|+..|++..|+..-++..+==+.+-. .+|. ...+|++|++
T Consensus 298 ~~~~~v~l~pGetlfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~~E~~~~~-----~~~~~~p~f~~~~w~~~ 372 (447)
T 3kv4_A 298 DKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEIEKRLST-----ADLFRFPNFETICWYVG 372 (447)
T ss_dssp SCCEEEEEETTCEEEECTTCEEEEEESSCEEEEEEEECCSTTHHHHHHHHHHHHHTTC-----CGGGSCTTHHHHHHHHH
T ss_pred cceEEEEECCCcEEecCCCCeEEEecCCCEEEEccccccccCHHHHHHHHHHHHhcCC-----CccccccCHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999998873233311 2333 3478999999
Q ss_pred HHHHHHHHhhc
Q 004933 709 AQAIKDANSLI 719 (723)
Q Consensus 709 ~~av~~l~~l~ 719 (723)
+..+..|+.+.
T Consensus 373 ~~~~~~~~~~~ 383 (447)
T 3kv4_A 373 KHILDIFRGLR 383 (447)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998773
No 7
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*
Probab=98.92 E-value=1.1e-08 Score=111.47 Aligned_cols=87 Identities=16% Similarity=0.192 Sum_probs=69.2
Q ss_pred CccceEEEeecCceeEecCCCccccccccccceeeccccCccchHHHHHHHHHhhcCCcccccchhhhhHhHHHHHHHHH
Q 004933 631 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEIKKMILYAVAQ 710 (723)
Q Consensus 631 GVepWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLteEfR~Lp~~H~~keDkLevkkm~l~A~~~ 710 (723)
..+++.++|.+||++|||+|..|||.||..+|-|...|+++.|+...++..+==+.|-. ..+-+=.....|++|+++.
T Consensus 241 ~~~~~~v~l~pGe~lfIPsGW~H~V~nledSIai~~NFl~~~nl~~~l~~~~~E~~~k~--~~~~~fp~F~~~~w~~a~~ 318 (397)
T 3kv9_A 241 VDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLKT--PDLFKFPFFEAICWFVAKN 318 (397)
T ss_dssp SSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHHHTC--GGGGGSTTHHHHHHHHHHH
T ss_pred cCceEEEEECCCCEEEeCCCCeEEccCCcCeEEECCcccCchhHHHHHHHHHHHHhcCC--CccCcCccHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999988876543222211 1122233567889999999
Q ss_pred HHHHHHhhc
Q 004933 711 AIKDANSLI 719 (723)
Q Consensus 711 av~~l~~l~ 719 (723)
-++.|+.+.
T Consensus 319 ~l~~~~~~~ 327 (397)
T 3kv9_A 319 LLETLKELR 327 (397)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998888764
No 8
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=98.91 E-value=5.9e-09 Score=116.53 Aligned_cols=86 Identities=16% Similarity=0.207 Sum_probs=69.7
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceeeccccCccchHHHHHHHHHhhcCCcccccchhhhhHhHHHHHHHHHH
Q 004933 632 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEIKKMILYAVAQA 711 (723)
Q Consensus 632 VepWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLteEfR~Lp~~H~~keDkLevkkm~l~A~~~a 711 (723)
.+++.++|.+||++|||+|..|||.||..||-|...|++..|+...++..+==+.|-. ..+-.-.....|++|+++.-
T Consensus 333 ~~~~~~~l~pGe~lfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~~e~~~~~--~~~~~~p~f~~~~w~~~~~~ 410 (488)
T 3kv5_D 333 DKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLKT--PDLFKFPFFEAICWFVAKNL 410 (488)
T ss_dssp SCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHHTTC--CTTSSCTTHHHHHHHHHHHH
T ss_pred cceEEEeeCCCCEEEeCCCceEEeeCCCCeEEEccccCCccCHHHHHHHHHHHHhcCC--cccccCccHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999998887653333321 11222335578899999999
Q ss_pred HHHHHhhc
Q 004933 712 IKDANSLI 719 (723)
Q Consensus 712 v~~l~~l~ 719 (723)
++.|+.+.
T Consensus 411 l~~~~~~~ 418 (488)
T 3kv5_D 411 LETLKELR 418 (488)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888764
No 9
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*
Probab=98.86 E-value=1.1e-09 Score=116.62 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=39.5
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceeeccccCccc
Q 004933 632 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 673 (723)
Q Consensus 632 VepWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPEn 673 (723)
+.++.+++.+||++|||+|..|||+||-.||.|..-|.++..
T Consensus 237 ~~~~~~~L~pGD~LyiP~gWwH~v~~l~~sisvn~~~~~~~~ 278 (338)
T 3al5_A 237 ARRYECSLEAGDVLFIPALWFHNVISEEFGVGVNIFWKHLPS 278 (338)
T ss_dssp CCEEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECSSCG
T ss_pred CCCEEEEECCCCEEEECCCCeEEEeeCCCEEEEEEEecCCcc
Confidence 578999999999999999999999999999999999998874
No 10
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*
Probab=98.81 E-value=3.4e-08 Score=107.55 Aligned_cols=85 Identities=18% Similarity=0.178 Sum_probs=69.5
Q ss_pred CccceEEEeecCceeEecCCCccccccccccceeeccccCccchHHHHHHHH-HhhcCCcccccchhhhhHhHHHHHHHH
Q 004933 631 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK-EFRLLPKNHRAREDKLEIKKMILYAVA 709 (723)
Q Consensus 631 GVepWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLte-EfR~Lp~~H~~keDkLevkkm~l~A~~ 709 (723)
..+++.++|..||++|||+|..|||.|+..||-|...|++..|+..-++..+ |-|.= ... +-.=-...+|++|++.
T Consensus 240 ~~~~~ev~l~pGEtlfIPsGWwH~V~nledSIai~gNFl~~~nl~~~l~~~~~E~~~~-~~~--~f~fp~F~~~~wy~~~ 316 (392)
T 3pua_A 240 VDKCYKCIVKQGQTLFIPSGWIYATLTPVDCLAFAGHFLHSLSVEMQMRAYEVERRLK-LGS--LTQFPNFETACWYMGK 316 (392)
T ss_dssp SSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCTTCHHHHHHHHHHHHHHT-CCC--SSCCTTHHHHHHHHHH
T ss_pred ccceEEEEECCCcEEeeCCCceEEEecCCCEEEEcCcccChhhHHHHHHHHHHHHHhC-CCc--cCcCCChHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999887 54421 111 1111145789999999
Q ss_pred HHHHHHHhh
Q 004933 710 QAIKDANSL 718 (723)
Q Consensus 710 ~av~~l~~l 718 (723)
.-++.|+.+
T Consensus 317 ~~l~~~~~~ 325 (392)
T 3pua_A 317 HLLEAFKGS 325 (392)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988865
No 11
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...
Probab=98.71 E-value=2.9e-09 Score=114.03 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=36.7
Q ss_pred CccceEEEeecCceeEecCCCcccccccc-ccceeeccccCc
Q 004933 631 GVEPWTFEQKLGEAVFIPAGCPHQVRNLK-SCTKVAVDFVSP 671 (723)
Q Consensus 631 GVepWtf~Q~~GeAVFIPAGcPHQVrNL~-SCIKVAlDFVSP 671 (723)
.+.++.+++.+||++|||+|-.|||+||. .++.|++.|..+
T Consensus 257 ~~~~~~~~l~pGD~LyiP~gWwH~V~~l~d~~~sisvn~w~~ 298 (349)
T 3d8c_A 257 NVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYK 298 (349)
T ss_dssp GCCEEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEEEEE
T ss_pred cCCcEEEEECCCCEEEECCCCcEEEEEcCCCCcEEEEEEEcC
Confidence 35799999999999999999999999998 588899888753
No 12
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=97.47 E-value=7.1e-05 Score=84.12 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=46.9
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceeeccccCccchHHHHHHHH
Q 004933 632 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTK 682 (723)
Q Consensus 632 VepWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLte 682 (723)
.....++|..||++|||||..|+|.|+..||-|...|++..|+..-+++++
T Consensus 363 ~~~~~v~l~pGEtlfIPsGW~HaV~tleDSIaiggNFl~~~nl~~qlri~~ 413 (528)
T 3pur_A 363 GAVKRVVIKEGQTLLIPAGWIHAVLTPVDSLVFGGNFLHLGNLEMQMRVYH 413 (528)
T ss_dssp TCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCGGGHHHHHHHHH
T ss_pred ccEEEEEECCCCEEEecCCceEEEecCCCeEEEcCcccchhhHHHHHHHHH
Confidence 345689999999999999999999999999999999999999999888664
No 13
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}
Probab=97.37 E-value=0.00021 Score=76.37 Aligned_cols=86 Identities=19% Similarity=0.292 Sum_probs=70.8
Q ss_pred CccEeEeecCCChHHHHHHHHHHHHhhccccCCCCCcccCCcCCcceecCHHHHHHHHHHhCccceEEEeecCceeEecC
Q 004933 570 GGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPA 649 (723)
Q Consensus 570 ~GAlWdIFrreDv~KLreyL~kh~~Ef~h~~~~p~~~v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GeAVFIPA 649 (723)
+--+|=.-..+.+.+++++++++- .|. |.+.++++.+- |+ +.||.=+.|+|++||.|+|++
T Consensus 233 ~~~~Wy~VP~e~~~~~e~l~~k~~--------------~d~-~~~~~~~~p~~---L~-~~gIPvyr~~QkpGd~Vi~~P 293 (332)
T 2xxz_A 233 GDCEWFAVHEHYWETISAFCDRHG--------------VDY-LTGSWWPILDD---LY-ASNIPVYRFVQRPGDLVWINA 293 (332)
T ss_dssp SCEEEEEECGGGHHHHHHHHHHTT--------------CCT-TTSCBCCCHHH---HH-HTTCCCEEEEECTTCEEEECT
T ss_pred CceEEEEECHHHHHHHHHHHHhcC--------------Cch-hhceecCCHHH---HH-hCCCCeEEEEECCCCEEEECC
Confidence 344999999999999999998632 122 34567776643 33 359999999999999999999
Q ss_pred CCccccccccccceeeccccCccch
Q 004933 650 GCPHQVRNLKSCTKVAVDFVSPENV 674 (723)
Q Consensus 650 GcPHQVrNL~SCIKVAlDFVSPEnV 674 (723)
||-|||.|.=-|+++|..|..|...
T Consensus 294 gayH~v~n~G~~~n~awN~a~~~~~ 318 (332)
T 2xxz_A 294 GTVHWVQATGWCNNIAWNVGPLTAY 318 (332)
T ss_dssp TCEEEEEESSSEEEEEEEEESCTTG
T ss_pred CceEEEEecceeeEEEEEeCCCcHH
Confidence 9999999999999999999999865
No 14
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*
Probab=97.11 E-value=0.00048 Score=77.75 Aligned_cols=88 Identities=22% Similarity=0.295 Sum_probs=72.7
Q ss_pred CccEeEeecCCChHHHHHHHHHHHHhhccccCCCCCcccCCcCCcceecCHHHHHHHHHHhCccceEEEeecCceeEecC
Q 004933 570 GGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPA 649 (723)
Q Consensus 570 ~GAlWdIFrreDv~KLreyL~kh~~Ef~h~~~~p~~~v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GeAVFIPA 649 (723)
+-.+|=.=..++..|++++++++- .|. +..+++++.+. |+ +.||.=+.|+|++||.|++++
T Consensus 292 g~~~Wy~VP~e~~~k~e~l~~k~~--------------~~~-~~~~~~~~p~~---L~-~~gIPvyr~vQkpGd~Vi~~P 352 (531)
T 3avr_A 292 GDCEWFVVPEGYWGVLNDFCEKNN--------------LNF-LMGSWWPNLED---LY-EANVPVYRFIQRPGDLVWINA 352 (531)
T ss_dssp SCEEEEEECGGGHHHHHHHHHHTT--------------CCT-TTSCBCCCHHH---HH-HTTCCCEEEEECTTCEEEECT
T ss_pred CCeEEEEeCHHHHHHHHHHHHHcC--------------CCh-hhceeecCHHH---HH-hCCCCeEEEEECCCCEEEECC
Confidence 345999999999999999998651 233 34567776553 33 359999999999999999999
Q ss_pred CCccccccccccceeeccccCccchHH
Q 004933 650 GCPHQVRNLKSCTKVAVDFVSPENVDE 676 (723)
Q Consensus 650 GcPHQVrNL~SCIKVAlDFVSPEnV~e 676 (723)
||.|||.|+=-|+++|..|..|.-..-
T Consensus 353 gayH~v~n~G~~~n~awN~a~~~~~q~ 379 (531)
T 3avr_A 353 GTVHWVQAIGWCNNIAWNVGPLTACQY 379 (531)
T ss_dssp TCEEEEEESSSEEEEEEEECCSSHHHH
T ss_pred CceEEEEecceeeeeEEEeccCchHHH
Confidence 999999999999999999999996553
No 15
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A*
Probab=96.52 E-value=0.0023 Score=71.62 Aligned_cols=131 Identities=20% Similarity=0.272 Sum_probs=90.3
Q ss_pred CccEeEeecCCChHHHHHHHHHHHHhhccccCCCCCcccCCcCCcceecCHHHHHHHHHHhCccceEEEeecCceeEecC
Q 004933 570 GGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPA 649 (723)
Q Consensus 570 ~GAlWdIFrreDv~KLreyL~kh~~Ef~h~~~~p~~~v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GeAVFIPA 649 (723)
+--+|=.=..+...+++++++++.. |. +.+.++.+.+. |+ +.||.=+.|+|++||.|++++
T Consensus 267 g~c~WY~VP~e~~~k~e~l~~k~~~--------------d~-l~~~~~pspe~---L~-kagIPvyr~iQkPGdfVit~P 327 (510)
T 4ask_A 267 GDCEWFAVHEHYWETISAFCDRHGV--------------DY-LTGSWWPILDD---LY-ASNIPVYRFVQRPGDLVWINA 327 (510)
T ss_dssp SCEEEEEECGGGHHHHHHHHHHTTC--------------CT-TTSCBCCCHHH---HH-HTTCCCEEEEECTTCEEEECT
T ss_pred CceeEEEECHHHHHHHHHHHHHhCc--------------ch-hhccccCCHHH---HH-hCCCCeEEEEECCCCEEEECC
Confidence 3459999999999999999886421 22 33667776653 33 479999999999999999999
Q ss_pred CCccccccccccceeeccccCccchHHHHHH-HHHhhc-------CCccc---------ccchhh--hhHhHHHHHHHHH
Q 004933 650 GCPHQVRNLKSCTKVAVDFVSPENVDECLRL-TKEFRL-------LPKNH---------RAREDK--LEIKKMILYAVAQ 710 (723)
Q Consensus 650 GcPHQVrNL~SCIKVAlDFVSPEnV~ec~rL-teEfR~-------Lp~~H---------~~keDk--Levkkm~l~A~~~ 710 (723)
|+.|+|+|.==|+++|-.|.-|-...--+.+ ..|... +|..| +..+.+ --||.|++.+++.
T Consensus 328 gtyH~Vqs~Gf~~niaWNvap~t~~qlqlA~e~y~~n~~~~~~SivPm~~L~Wn~Ar~~k~~d~~l~~liK~~L~rSL~~ 407 (510)
T 4ask_A 328 GTVHWVQATGWCNNIAWNVGPLTAYQYQLALERYEWNEVKNVKSIVPMIHVSWNVARTVKISDPDLFKMIKFCLLQSMKH 407 (510)
T ss_dssp TCEEEEEESSSEEEEEEEECBSSHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEecCeeeeeEEEecCCCHHHHHHHHHHHHHHHHhCcCcccChHHHHHHHHhhhhccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987543321111 112111 22222 111111 2367888888888
Q ss_pred HHHHHHhhc
Q 004933 711 AIKDANSLI 719 (723)
Q Consensus 711 av~~l~~l~ 719 (723)
+..++.-+.
T Consensus 408 ~~~~~d~~~ 416 (510)
T 4ask_A 408 CQVQRESLV 416 (510)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877776553
No 16
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*
Probab=96.24 E-value=0.0057 Score=65.93 Aligned_cols=97 Identities=22% Similarity=0.217 Sum_probs=80.2
Q ss_pred CCcc--EeEeecCCChHHHHHHHHHHHHhhccccCCCCCcccCCcCCcceecCHHHHHHHHHHhCccceEEEeecCceeE
Q 004933 569 SGGA--LWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVF 646 (723)
Q Consensus 569 ~~GA--lWdIFrreDv~KLreyL~kh~~Ef~h~~~~p~~~v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GeAVF 646 (723)
..|| +|=.-.+++..|+++++++.+.+.- ..|. +=+|...+.++++. |+ +.||.-.+++|++||.|+
T Consensus 205 H~GapK~WY~VP~~~~~kfE~l~k~~~p~~~-~~c~------~fL~h~~~lisP~~---L~-~~GIpv~~~vQ~pGEfVi 273 (354)
T 3dxt_A 205 HLGEPKTWYVVPPEHGQRLERLARELFPGSS-RGCG------AFLRHKVALISPTV---LK-ENGIPFNRITQEAGEFMV 273 (354)
T ss_dssp EEESCEEEEEECGGGHHHHHHHHHHHSHHHH-HHCT------TGGGGCCEEECHHH---HH-HTTCCCEEEEECTTCEEE
T ss_pred ecCCceEEEEeCHHHHHHHHHHHHHhCchhh-hhcH------HHHhcCcccCCHHH---HH-HCCCceEEEEeCCCcEEE
Confidence 3455 9999999999999999998865421 1232 22566788899873 44 479999999999999999
Q ss_pred ecCCCccccccccccceeeccccCccchHH
Q 004933 647 IPAGCPHQVRNLKSCTKVAVDFVSPENVDE 676 (723)
Q Consensus 647 IPAGcPHQVrNL~SCIKVAlDFVSPEnV~e 676 (723)
+-.|+=|.|.|+--++..|..|..|.=+..
T Consensus 274 TfP~aYH~gfn~Gfn~aEAvNFA~~~Wl~~ 303 (354)
T 3dxt_A 274 TFPYGYHAGFNHGFNCAEAINFATPRWIDY 303 (354)
T ss_dssp ECTTCEEEEEESSSEEEEEEEECCGGGHHH
T ss_pred ECCCceEEEeeccccHhHhhccCcHHHHHh
Confidence 999999999999999999999999997753
No 17
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*
Probab=95.40 E-value=0.022 Score=61.80 Aligned_cols=95 Identities=21% Similarity=0.223 Sum_probs=75.8
Q ss_pred Ccc--EeEeecCCChHHHHHHHHHHHHhhccccCCCCCcccCCcCCcceecCHHHHHHHHHHhCccceEEEeecCceeEe
Q 004933 570 GGA--LWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFI 647 (723)
Q Consensus 570 ~GA--lWdIFrreDv~KLreyL~kh~~Ef~h~~~~p~~~v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GeAVFI 647 (723)
.|| +|=.-..+++.|+++++++++.+.- ..|. +=+|...+.+++. .|+ +.||.-.+++|++||.|++
T Consensus 249 ~GapK~WY~VP~~~~~kfE~l~k~~~p~~~-~~c~------~fL~h~~~lisP~---~L~-~~GIpv~r~vQ~pGEfViT 317 (373)
T 3opt_A 249 FGAPKQWYSIPQEDRFKFYKFMQEQFPEEA-KNCP------EFLRHKMFLASPK---LLQ-ENGIRCNEIVHHEGEFMIT 317 (373)
T ss_dssp EESCEEEEECCGGGHHHHHHHHHHSSHHHH-SSCS------SCTTTSCEEECHH---HHH-TTTCCCEEEEECTTCEEEE
T ss_pred cCCCeEEEEeCHHHHHHHHHHHHHhChhhh-hhCH------HHhhCCcccCCHH---HHH-hcCCceEEEEECCCCEEEE
Confidence 354 9999999999999999998875421 1232 3356677888885 344 5799999999999999999
Q ss_pred cCCCccccccccccceeeccccCccchH
Q 004933 648 PAGCPHQVRNLKSCTKVAVDFVSPENVD 675 (723)
Q Consensus 648 PAGcPHQVrNL~SCIKVAlDFVSPEnV~ 675 (723)
=.|+=|.|.|+--++..|..|..|+=+.
T Consensus 318 fP~aYH~gfn~Gfn~aEAvNFA~~~Wl~ 345 (373)
T 3opt_A 318 YPYGYHAGFNYGYNLAESVNFALEEWLP 345 (373)
T ss_dssp CTTCCEEEEESSSEEEEEEEECCC----
T ss_pred CCCceEEEEecCccHHHHHccCcHHHHH
Confidence 9999999999999999999999997654
No 18
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11
Probab=95.31 E-value=0.028 Score=60.01 Aligned_cols=80 Identities=15% Similarity=0.183 Sum_probs=53.0
Q ss_pred ccceEEEeecCceeEecCCCccccccc--cccceeeccccCccchHHHHHH--------HHHhhcCCcccccchhhhhHh
Q 004933 632 VEPWTFEQKLGEAVFIPAGCPHQVRNL--KSCTKVAVDFVSPENVDECLRL--------TKEFRLLPKNHRAREDKLEIK 701 (723)
Q Consensus 632 VepWtf~Q~~GeAVFIPAGcPHQVrNL--~SCIKVAlDFVSPEnV~ec~rL--------teEfR~Lp~~H~~keDkLevk 701 (723)
..++.++-.+||+.|||+|.+|+|+++ ..|+.|.+- +| +..+-+.- ..+||.||..... .-=++.
T Consensus 215 ~~~~~~~L~pGD~LyiP~gwwH~v~s~~~~~slsvsi~--~~-~~~dll~~~l~~~~~~~~~~r~lp~~~~~--~~~~~~ 289 (342)
T 1vrb_A 215 PDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFG--QP-AWLDLMLAALRKKLISDNRFRELAVNHQS--LHESSK 289 (342)
T ss_dssp CSSEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEEC--CC-BHHHHHHHHHHHHHTTSGGGGSBCCCTTS--SCHHHH
T ss_pred CCceEEEECCCcEEEeCCCccEEEEECCCCceEEEEEC--CC-cHHHHHHHHHHHHHHhCHHhhhCCCcccc--Cchhhh
Confidence 567999999999999999999999999 468888877 55 33332221 2368888765421 112344
Q ss_pred HHHHHHHHHHHHHHH
Q 004933 702 KMILYAVAQAIKDAN 716 (723)
Q Consensus 702 km~l~A~~~av~~l~ 716 (723)
.-++-.+.++++.|.
T Consensus 290 ~~~~~~~~~ll~~l~ 304 (342)
T 1vrb_A 290 SELNGYLESLIQTLS 304 (342)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555554
No 19
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Probab=95.06 E-value=0.03 Score=60.97 Aligned_cols=94 Identities=16% Similarity=0.155 Sum_probs=78.0
Q ss_pred cEeEeecCCChHHHHHHHHHHHHhhccccCCCCCcccCCcCCcceecCHHHHHHHHHHhCccceEEEeecCceeEecCCC
Q 004933 572 ALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGC 651 (723)
Q Consensus 572 AlWdIFrreDv~KLreyL~kh~~Ef~h~~~~p~~~v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GeAVFIPAGc 651 (723)
-.|=.=.++++.|+++++++++.+.-. .|. +=+|...+.++++. |+ +.||.-.+++|++||.|++=.|+
T Consensus 228 K~WY~VP~~~~~kfE~l~~~~~P~~~~-~~~------~~L~h~~~~isP~~---L~-~~GIpv~r~vQ~pGEfViTfP~a 296 (381)
T 2ox0_A 228 KSWYSVPPEHGKRLERLAKGFFPGSAQ-SCE------AFLRHKMTLISPLM---LK-KYGIPFDKVTQEAGEFMITFPYG 296 (381)
T ss_dssp EEEEEECGGGHHHHHHHHHHHSHHHHH-HCT------TGGGGSCEEECHHH---HH-HTTCCCEEEEECTTCEEEECTTC
T ss_pred eEEEecCHHHHHHHHHHHHHhChhhhh-cch------HHhhccccccCHHH---HH-HCCCceEEEEecCCCEEEECCCc
Confidence 399999999999999999998654211 222 33566788898853 33 57999999999999999999999
Q ss_pred ccccccccccceeeccccCccchHH
Q 004933 652 PHQVRNLKSCTKVAVDFVSPENVDE 676 (723)
Q Consensus 652 PHQVrNL~SCIKVAlDFVSPEnV~e 676 (723)
=|.|.|+=-++..|..|..|+=+..
T Consensus 297 YH~gfn~GfN~aEAvNFA~~~Wl~~ 321 (381)
T 2ox0_A 297 YHAGFNHGFNCAESTNFATRRWIEY 321 (381)
T ss_dssp EEEEEECSSEEEEEEEECCTTHHHH
T ss_pred EEEeecCcccHHHHhccCcHHHHHH
Confidence 9999999999999999999886644
No 20
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=92.82 E-value=0.056 Score=41.58 Aligned_cols=32 Identities=22% Similarity=0.704 Sum_probs=25.2
Q ss_pred eEecCCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCC
Q 004933 8 VVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (723)
Q Consensus 8 vv~C~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~ 46 (723)
++.-..|+ ..||..||.+|... ...||+||..
T Consensus 21 ~~~~~~C~-H~f~~~Ci~~w~~~------~~~CP~Cr~~ 52 (55)
T 1iym_A 21 ARFLPRCG-HGFHAECVDMWLGS------HSTCPLCRLT 52 (55)
T ss_dssp CEECSSSC-CEECTTHHHHTTTT------CCSCSSSCCC
T ss_pred eEECCCCC-CcccHHHHHHHHHc------CCcCcCCCCE
Confidence 45555787 78999999999864 3579999963
No 21
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=92.18 E-value=0.037 Score=48.50 Aligned_cols=34 Identities=32% Similarity=0.971 Sum_probs=27.8
Q ss_pred eEecCCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCc
Q 004933 8 VVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (723)
Q Consensus 8 vv~C~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~C 47 (723)
.|.|+.|+ ..||..||.+|+..-. ..||.||..-
T Consensus 35 p~~~~~Cg-H~FC~~Ci~~~~~~~~-----~~CP~Cr~~~ 68 (100)
T 3lrq_A 35 ARLCPHCS-KLCCFSCIRRWLTEQR-----AQCPHCRAPL 68 (100)
T ss_dssp EEECTTTC-CEEEHHHHHHHHHHTC-----SBCTTTCCBC
T ss_pred ccccCCCC-ChhhHHHHHHHHHHCc-----CCCCCCCCcC
Confidence 56789999 8899999999985431 6899999865
No 22
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=92.06 E-value=0.046 Score=48.60 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.6
Q ss_pred EEeecCceeEecCCCccccccccc
Q 004933 637 FEQKLGEAVFIPAGCPHQVRNLKS 660 (723)
Q Consensus 637 f~Q~~GeAVFIPAGcPHQVrNL~S 660 (723)
+.=..||.|+||||.||+++|.-.
T Consensus 75 ~~l~~Gd~i~ipa~~~H~~~n~~~ 98 (112)
T 2opk_A 75 RVMRPGDWLHVPAHCRHRVAWTDG 98 (112)
T ss_dssp EEECTTEEEEECTTCCEEEEEECS
T ss_pred EEECCCCEEEECCCCcEEEEeCCC
Confidence 445679999999999999999864
No 23
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.95 E-value=0.057 Score=44.46 Aligned_cols=33 Identities=21% Similarity=0.790 Sum_probs=25.4
Q ss_pred ceEecCCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCC
Q 004933 7 YVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (723)
Q Consensus 7 ~vv~C~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~ 46 (723)
..+....|+ ..||..||.+|... ...||+||..
T Consensus 37 ~~~~~l~C~-H~fh~~Ci~~w~~~------~~~CP~Cr~~ 69 (75)
T 1x4j_A 37 QLLRVLPCN-HEFHAKCVDKWLKA------NRTCPICRAD 69 (75)
T ss_dssp CEEEEETTT-EEEETTHHHHHHHH------CSSCTTTCCC
T ss_pred CeEEEECCC-CHhHHHHHHHHHHc------CCcCcCcCCc
Confidence 345666788 78999999999732 3589999864
No 24
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=91.63 E-value=0.085 Score=45.79 Aligned_cols=59 Identities=25% Similarity=0.429 Sum_probs=39.5
Q ss_pred ccCCcCCcceecCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceeeccccCcc
Q 004933 607 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 672 (723)
Q Consensus 607 v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 672 (723)
..|+ +++-+|+..-.- ++.++.=++.=..||+++||+|.||+++|...+.-+.+ ++.||
T Consensus 56 H~H~-~~e~~~vl~G~~-----~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~v-~~~~~ 114 (115)
T 1yhf_A 56 HSSP-GDAMVTILSGLA-----EITIDQETYRVAEGQTIVMPAGIPHALYAVEAFQMLLV-VVKPE 114 (115)
T ss_dssp ECCS-SEEEEEEEESEE-----EEEETTEEEEEETTCEEEECTTSCEEEEESSCEEEEEE-EECSC
T ss_pred EECC-CcEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCCEEEEECCCceEEEE-EEccC
Confidence 3555 566666654432 13455566778899999999999999999876543333 44444
No 25
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=91.54 E-value=0.072 Score=42.93 Aligned_cols=35 Identities=29% Similarity=0.813 Sum_probs=27.3
Q ss_pred CceEecCCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCc
Q 004933 6 KYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (723)
Q Consensus 6 ~~vv~C~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~C 47 (723)
++++.-..|+ ..||..||.+|... ...||+||..-
T Consensus 27 ~~~~~~~~Cg-H~fc~~Ci~~~~~~------~~~CP~Cr~~~ 61 (71)
T 3ng2_A 27 GRLIVSTECG-HVFCSQCLRDSLKN------ANTCPTCRKKI 61 (71)
T ss_dssp TCCEEECTTS-CEEEHHHHHHHHHH------CSBCTTTCCBC
T ss_pred cCCeEeCCCC-ChHhHHHHHHHHHc------CCCCCCCCCcc
Confidence 3456677898 78999999999742 36899999754
No 26
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=91.41 E-value=0.068 Score=46.50 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=39.7
Q ss_pred ccCCcCCcceecCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceeeccccCcc
Q 004933 607 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 672 (723)
Q Consensus 607 v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 672 (723)
..|| .+|-+|+-.-.- ++-+..=++.=..||+++||+|.||+++|...|. .+.+.+|.
T Consensus 50 H~H~-~~e~~~vl~G~~-----~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~--~l~v~~p~ 107 (116)
T 2pfw_A 50 HAHR-HSQVSYVVEGEF-----HVNVDGVIKVLTAGDSFFVPPHVDHGAVCPTGGI--LIDTFSPA 107 (116)
T ss_dssp ECCS-SEEEEEEEEECE-----EEEETTEEEEECTTCEEEECTTCCEEEEESSCEE--EEEEEESC
T ss_pred EECC-cceEEEEEeeEE-----EEEECCEEEEeCCCCEEEECcCCceeeEeCCCcE--EEEEECCc
Confidence 4566 667666643322 2334445677889999999999999999998763 34445553
No 27
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=91.33 E-value=0.11 Score=46.71 Aligned_cols=41 Identities=32% Similarity=0.244 Sum_probs=31.4
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceeeccccCcc
Q 004933 632 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 672 (723)
Q Consensus 632 VepWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 672 (723)
+..=++.=..||+|+||+|.||+++|...---+.+-+++|.
T Consensus 76 ~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~l~i~~~~ 116 (145)
T 3ht1_A 76 DQGRTEEVGPGEAIFIPRGEPHGFVTGPGQTCRFLVVAPCE 116 (145)
T ss_dssp GGTEEEEECTTCEEEECTTCCBEEECCTTCCEEEEEEEESC
T ss_pred ECCEEEEECCCCEEEECCCCeEEeEcCCCCCEEEEEEECCC
Confidence 45557777899999999999999999876544555555554
No 28
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.31 E-value=0.04 Score=43.99 Aligned_cols=33 Identities=30% Similarity=0.884 Sum_probs=25.9
Q ss_pred ceEecCCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCC
Q 004933 7 YVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (723)
Q Consensus 7 ~vv~C~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~ 46 (723)
+.+.-..|+ ..||..||.+|... ...||+||..
T Consensus 33 ~~~~~~~Cg-H~fc~~Ci~~~~~~------~~~CP~Cr~~ 65 (69)
T 2ea6_A 33 RLIVSTECG-HVFCSQCLRDSLKN------ANTCPTCRKK 65 (69)
T ss_dssp CCEEECSSS-CEEEHHHHHHHHHH------CSSCTTTCCC
T ss_pred CCeEeCCCC-ChhcHHHHHHHHHc------CCCCCCCCCc
Confidence 345567888 78999999999743 4589999975
No 29
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=91.24 E-value=0.085 Score=46.85 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=38.3
Q ss_pred cCCcCCcceecCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceeeccccCcc
Q 004933 608 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 672 (723)
Q Consensus 608 ~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 672 (723)
.|| +++-+|+-.-.- ++-|..=++.=..||+|+||+|.||+++|...+ ++.+-+|.|.
T Consensus 53 ~H~-~~e~~~Vl~G~~-----~~~i~~~~~~l~~Gd~i~ip~~~~H~~~~~~~~-~~~~~~v~p~ 110 (114)
T 3fjs_A 53 SVA-GPSTIQCLEGEV-----EIGVDGAQRRLHQGDLLYLGAGAAHDVNAITNT-SLLVTVVLVD 110 (114)
T ss_dssp CCS-SCEEEEEEESCE-----EEEETTEEEEECTTEEEEECTTCCEEEEESSSE-EEEEEEECC-
T ss_pred eCC-CcEEEEEEECEE-----EEEECCEEEEECCCCEEEECCCCcEEEEeCCCc-EEEEEEEeCC
Confidence 444 245555543322 244555678888999999999999999999765 3444555554
No 30
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=91.20 E-value=0.069 Score=46.74 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=20.7
Q ss_pred EEeecCceeEecCCCccccccccc
Q 004933 637 FEQKLGEAVFIPAGCPHQVRNLKS 660 (723)
Q Consensus 637 f~Q~~GeAVFIPAGcPHQVrNL~S 660 (723)
+.-..||++|||+|.+|++.|.-+
T Consensus 61 ~~l~~G~~~~ip~G~~H~~~N~g~ 84 (98)
T 3lag_A 61 AQLKTGRSYARKAGVQHDVRNEST 84 (98)
T ss_dssp CCBCTTCCEEECTTCEEEEBCCSS
T ss_pred EEecCCcEEEEcCCCcEECEECCC
Confidence 445789999999999999999754
No 31
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=91.13 E-value=0.064 Score=41.14 Aligned_cols=33 Identities=18% Similarity=0.412 Sum_probs=26.0
Q ss_pred ceEecCCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCC
Q 004933 7 YVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (723)
Q Consensus 7 ~vv~C~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~ 46 (723)
..+....|+ ..||..||.+|...- ..||+||..
T Consensus 20 ~~~~~~~Cg-H~fc~~Ci~~~~~~~------~~CP~Cr~~ 52 (55)
T 2ecm_A 20 VVAHVLPCG-HLLHRTCYEEMLKEG------YRCPLCSGP 52 (55)
T ss_dssp SCEEECTTS-CEEETTHHHHHHHHT------CCCTTSCCS
T ss_pred cCeEecCCC-CcccHHHHHHHHHcC------CcCCCCCCc
Confidence 456677887 689999999997532 789999863
No 32
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=91.07 E-value=0.04 Score=43.32 Aligned_cols=34 Identities=29% Similarity=0.848 Sum_probs=26.6
Q ss_pred ceEecCCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCc
Q 004933 7 YVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (723)
Q Consensus 7 ~vv~C~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~C 47 (723)
+.+.-+.|+ ..||..||.+|... ...||+||..-
T Consensus 21 ~~~~~~~Cg-H~fc~~Ci~~~~~~------~~~CP~Cr~~~ 54 (64)
T 2xeu_A 21 RLIVSTECG-HVFCSQCLRDSLKN------ANTCPTCRKKI 54 (64)
T ss_dssp CCEEEETTS-CEEEHHHHHHHHHH------CSBCTTTCCBC
T ss_pred CCEEeCCCC-CchhHHHHHHHHHc------CCCCCCCCccC
Confidence 455667898 77999999999753 45899998753
No 33
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=90.93 E-value=0.12 Score=44.82 Aligned_cols=36 Identities=19% Similarity=0.676 Sum_probs=30.5
Q ss_pred CCceecCCccc-ccccccccCCCCC----cccchhchHHHh
Q 004933 121 DERVYCNHCAT-SIIDLHRSCPKCS----YELCLTCCKEIC 156 (723)
Q Consensus 121 DER~~CD~C~t-SI~D~HRsC~~Cs----ydLCL~CC~ElR 156 (723)
-..+.||.|.. +|+-.-..|..|. ||||..|....+
T Consensus 19 H~~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~ 59 (82)
T 2fc7_A 19 HVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLH 59 (82)
T ss_dssp ESSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCC
T ss_pred eCcCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCcc
Confidence 34678999996 8999999999996 999999998544
No 34
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=90.78 E-value=0.075 Score=45.45 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=29.6
Q ss_pred Ccc-ceEEEeecCceeEecCCCccccccccccceeeccccCc
Q 004933 631 GVE-PWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 671 (723)
Q Consensus 631 GVe-pWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSP 671 (723)
.++ .=++.=..||+++||||.||+++|...+. .+..++|
T Consensus 69 ~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~--~l~~~~p 108 (110)
T 2q30_A 69 VGDGDAVIPAPRGAVLVAPISTPHGVRAVTDMK--VLVTIAP 108 (110)
T ss_dssp ECGGGCEEEECTTEEEEEETTSCEEEEESSSEE--EEEEEES
T ss_pred EeCCCEEEEECCCCEEEeCCCCcEEEEEcCCcE--EEEEECC
Confidence 344 45677789999999999999999998752 3444555
No 35
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=90.60 E-value=0.12 Score=45.63 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=29.9
Q ss_pred ceEEEeecCceeEecCCCccccccccccceeeccccCcc
Q 004933 634 PWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 672 (723)
Q Consensus 634 pWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 672 (723)
.=++.=..||+|+||+|.||+++|..+---+.+.+++|-
T Consensus 78 ~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~v~~p~ 116 (125)
T 3h8u_A 78 GIVTHLKAGDIAIAKPGQVHGAMNSGPEPFIFVSVVAPG 116 (125)
T ss_dssp TCEEEEETTEEEEECTTCCCEEEECSSSCEEEEEEEEST
T ss_pred CeEEEeCCCCEEEECCCCEEEeEeCCCCCEEEEEEECCC
Confidence 335566789999999999999999876555555566663
No 36
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=90.48 E-value=0.12 Score=43.25 Aligned_cols=38 Identities=32% Similarity=0.414 Sum_probs=27.0
Q ss_pred ceEEEeecCceeEecCCCccccccccccceeeccccCc
Q 004933 634 PWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 671 (723)
Q Consensus 634 pWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSP 671 (723)
.=++.=..||+++||+|.||+++|..+---+.+-+++|
T Consensus 66 ~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~~~v~~p 103 (105)
T 1v70_A 66 EEEALLAPGMAAFAPAGAPHGVRNESASPALLLVVTAP 103 (105)
T ss_dssp TEEEEECTTCEEEECTTSCEEEECCSSSCEEEEEEEES
T ss_pred CEEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEeCC
Confidence 34566689999999999999999986432233444444
No 37
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=90.03 E-value=0.25 Score=43.63 Aligned_cols=59 Identities=27% Similarity=0.359 Sum_probs=40.8
Q ss_pred ccCCcCCcceecCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceeeccccCcc
Q 004933 607 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 672 (723)
Q Consensus 607 v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 672 (723)
..|| ++|-+|+-.-.- ++-|..-++.=..||+|+||+|.||.++|... --+.+.+++|-
T Consensus 57 H~H~-~~e~~~vl~G~~-----~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~-~~~~l~v~~p~ 115 (126)
T 4e2g_A 57 HEHP-HEQAGVMLEGTL-----ELTIGEETRVLRPGMAYTIPGGVRHRARTFED-GCLVLDIFSPP 115 (126)
T ss_dssp ECCS-SEEEEEEEEECE-----EEEETTEEEEECTTEEEEECTTCCEEEECCTT-CEEEEEEEESC
T ss_pred ccCC-CceEEEEEEeEE-----EEEECCEEEEeCCCCEEEECCCCcEEeEECCC-CEEEEEEECCC
Confidence 3566 466666644322 23445566777899999999999999999988 33455666664
No 38
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=89.89 E-value=0.13 Score=45.14 Aligned_cols=41 Identities=22% Similarity=0.273 Sum_probs=29.0
Q ss_pred cceEE-EeecCceeEecCCCcccccccccc--ceeeccccCccc
Q 004933 633 EPWTF-EQKLGEAVFIPAGCPHQVRNLKSC--TKVAVDFVSPEN 673 (723)
Q Consensus 633 epWtf-~Q~~GeAVFIPAGcPHQVrNL~SC--IKVAlDFVSPEn 673 (723)
..-++ .=..||++|||+|.||+++|..+. .-+.+.|-+|+.
T Consensus 63 ~~~~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~l~i~~~~~~~ 106 (117)
T 2b8m_A 63 EDQEPHNYKEGNIVYVPFNVKMLIQNINSDILEFFVVKAPHPKK 106 (117)
T ss_dssp TTSCCEEEETTCEEEECTTCEEEEECCSSSEEEEEEEECSCGGG
T ss_pred CCEEEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECCCCCC
Confidence 33344 667899999999999999998653 344444445543
No 39
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=89.87 E-value=0.12 Score=41.51 Aligned_cols=32 Identities=28% Similarity=0.727 Sum_probs=24.2
Q ss_pred eEecCCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCC
Q 004933 8 VVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (723)
Q Consensus 8 vv~C~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~ 46 (723)
.+....|+ ..||..||.+|... ...||+||..
T Consensus 29 ~~~~~~C~-H~fc~~Ci~~~~~~------~~~CP~Cr~~ 60 (69)
T 2kiz_A 29 DVRRLPCM-HLFHQVCVDQWLIT------NKKCPICRVD 60 (69)
T ss_dssp CEEECTTS-CEEEHHHHHHHHHH------CSBCTTTCSB
T ss_pred cEEEeCCC-CHHHHHHHHHHHHc------CCCCcCcCcc
Confidence 34556787 77999999999753 3469999864
No 40
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=89.59 E-value=0.11 Score=41.38 Aligned_cols=33 Identities=27% Similarity=0.863 Sum_probs=28.2
Q ss_pred ceecCCcccccccccccCCCC-CcccchhchHHHh
Q 004933 123 RVYCNHCATSIIDLHRSCPKC-SYELCLTCCKEIC 156 (723)
Q Consensus 123 R~~CD~C~tSI~D~HRsC~~C-sydLCL~CC~ElR 156 (723)
.+.||+|...| -.-..|..| .||||..|...-.
T Consensus 6 ~~~Cd~C~~~i-g~R~~C~~C~dyDLC~~C~~~~~ 39 (52)
T 1tot_A 6 VYTCNECKHHV-ETRWHCTVCEDYDLCINCYNTKS 39 (52)
T ss_dssp CEEETTTTEEE-SSEEEESSSSSCEECHHHHHHHC
T ss_pred EEECCCCCCCC-cceEEcCCCCCchhHHHHHhCCC
Confidence 47899999996 677889999 6999999998744
No 41
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=89.58 E-value=0.15 Score=47.11 Aligned_cols=29 Identities=31% Similarity=1.004 Sum_probs=23.4
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCc
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~C 47 (723)
..|+ ..||..||.+|.-.- ..||+||..-
T Consensus 69 ~~Cg-H~fc~~Ci~~~~~~~------~~CP~Cr~~~ 97 (138)
T 4ayc_A 69 LNCA-HSFCSYCINEWMKRK------IECPICRKDI 97 (138)
T ss_dssp ETTS-CEEEHHHHHHHTTTC------SBCTTTCCBC
T ss_pred CCCC-CCccHHHHHHHHHcC------CcCCCCCCcC
Confidence 4688 689999999998653 5799999754
No 42
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.58 E-value=0.075 Score=43.44 Aligned_cols=32 Identities=22% Similarity=0.633 Sum_probs=25.3
Q ss_pred EecCCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCc
Q 004933 9 VPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (723)
Q Consensus 9 v~C~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~C 47 (723)
|.-+.|+ ..||..||.+|... ...||+||..-
T Consensus 29 ~~~~~Cg-H~fC~~Ci~~~~~~------~~~CP~Cr~~~ 60 (72)
T 2djb_A 29 TTITECL-HTFCKSCIVRHFYY------SNRCPKCNIVV 60 (72)
T ss_dssp EECSSSC-CEECHHHHHHHHHH------CSSCTTTCCCC
T ss_pred CEECCCC-CHHHHHHHHHHHHc------CCcCCCcCccc
Confidence 4446888 78999999999843 47899998763
No 43
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=89.52 E-value=0.13 Score=44.84 Aligned_cols=36 Identities=8% Similarity=0.132 Sum_probs=28.6
Q ss_pred hCccceEEEeecCceeEecCCCccccccccccceee
Q 004933 630 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVA 665 (723)
Q Consensus 630 yGVepWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVA 665 (723)
+.|..=++.=..||+++||||.||.++|...|.=+.
T Consensus 71 ~~i~~~~~~l~~Gd~i~i~~~~~H~~~~~~~~~~~~ 106 (114)
T 2ozj_A 71 ITFDDQKIDLVPEDVLMVPAHKIHAIAGKGRFKMLQ 106 (114)
T ss_dssp EEETTEEEEECTTCEEEECTTCCBEEEEEEEEEEEE
T ss_pred EEECCEEEEecCCCEEEECCCCcEEEEeCCCcEEEE
Confidence 455666777889999999999999999986654333
No 44
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=89.51 E-value=0.14 Score=54.51 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=34.1
Q ss_pred EEEeecCceeEecCCCccccccccccceeeccccCc-cchHH
Q 004933 636 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP-ENVDE 676 (723)
Q Consensus 636 tf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSP-EnV~e 676 (723)
++.=+.||+||||||.||+++|...- |..+=|.+| ..++.
T Consensus 292 ~~~l~~Gd~~~iPag~~h~~~~~~~~-~~~l~~~~g~~g~~~ 332 (350)
T 1juh_A 292 ATELGSGDVAFIPGGVEFKYYSEAYF-SKVLFVSSGSDGLDQ 332 (350)
T ss_dssp CEEECTTCEEEECTTCCEEEEESSSS-EEEEEEEESSSSHHH
T ss_pred EEEeCCCCEEEECCCCCEEEEecCCe-EEEEEEecCccchhh
Confidence 45567899999999999999998766 888888888 77766
No 45
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=89.38 E-value=0.17 Score=43.33 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=22.0
Q ss_pred eEEEeecCceeEecCCCccccccccc
Q 004933 635 WTFEQKLGEAVFIPAGCPHQVRNLKS 660 (723)
Q Consensus 635 Wtf~Q~~GeAVFIPAGcPHQVrNL~S 660 (723)
=++.=..||+|+||||.||+++|.-+
T Consensus 59 ~~~~l~~Gd~~~~p~~~~H~~~N~g~ 84 (97)
T 2fqp_A 59 VTSQLTRGVSYTRPEGVEHNVINPSD 84 (97)
T ss_dssp EEEEECTTCCEEECTTCEEEEECCSS
T ss_pred EEEEEcCCCEEEeCCCCcccCEeCCC
Confidence 34556789999999999999999864
No 46
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=89.18 E-value=0.16 Score=43.57 Aligned_cols=32 Identities=28% Similarity=0.723 Sum_probs=24.7
Q ss_pred eEecCCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCC
Q 004933 8 VVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (723)
Q Consensus 8 vv~C~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~ 46 (723)
.+.-..|+ ..||..||.+|... ...||+||..
T Consensus 55 ~~~~l~C~-H~Fh~~Ci~~wl~~------~~~CP~Cr~~ 86 (91)
T 2l0b_A 55 VATELPCH-HYFHKPCVSIWLQK------SGTCPVCRCM 86 (91)
T ss_dssp EEEEETTT-EEEEHHHHHHHHTT------TCBCTTTCCB
T ss_pred cEEecCCC-ChHHHHHHHHHHHc------CCcCcCcCcc
Confidence 34445688 78999999999854 2489999964
No 47
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=88.83 E-value=0.21 Score=42.05 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=22.8
Q ss_pred EEEeecCceeEecCCCccccccccccc
Q 004933 636 TFEQKLGEAVFIPAGCPHQVRNLKSCT 662 (723)
Q Consensus 636 tf~Q~~GeAVFIPAGcPHQVrNL~SCI 662 (723)
++.=..||+++||+|.+|+++|...|.
T Consensus 69 ~~~l~~Gd~~~ip~~~~H~~~~~~~~~ 95 (102)
T 3d82_A 69 NITLQAGEMYVIPKGVEHKPMAKEECK 95 (102)
T ss_dssp EEEEETTEEEEECTTCCBEEEEEEEEE
T ss_pred EEEEcCCCEEEECCCCeEeeEcCCCCE
Confidence 555679999999999999999986554
No 48
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=88.69 E-value=0.24 Score=42.24 Aligned_cols=41 Identities=27% Similarity=0.394 Sum_probs=29.6
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceeeccccCcc
Q 004933 632 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 672 (723)
Q Consensus 632 VepWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 672 (723)
|..=++.=..||+++||+|.+|+.+|..+---+.+-+++|.
T Consensus 59 ~~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~v~~~~ 99 (113)
T 2gu9_A 59 VDGHTQALQAGSLIAIERGQAHEIRNTGDTPLKTVNFYHPP 99 (113)
T ss_dssp ETTEEEEECTTEEEEECTTCCEEEECCSSSCEEEEEEEESC
T ss_pred ECCEEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECCC
Confidence 34446677899999999999999999865433344445554
No 49
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=88.69 E-value=0.14 Score=45.25 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=26.0
Q ss_pred ceEEEeecCceeEecCCCcccccccccccee
Q 004933 634 PWTFEQKLGEAVFIPAGCPHQVRNLKSCTKV 664 (723)
Q Consensus 634 pWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKV 664 (723)
.-++.=..||+|+||||.||+.+|....-|+
T Consensus 67 g~~~~l~~GD~i~ip~g~~H~~~n~~~~~~~ 97 (101)
T 1o5u_A 67 GKKYVIEKGDLVTFPKGLRCRWKVLEPVRKH 97 (101)
T ss_dssp CCEEEEETTCEEEECTTCEEEEEEEEEEEEE
T ss_pred CCEEEECCCCEEEECCCCcEEEEeCCCeeEE
Confidence 4567788999999999999999998765443
No 50
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A
Probab=88.62 E-value=0.27 Score=50.04 Aligned_cols=77 Identities=13% Similarity=0.150 Sum_probs=52.8
Q ss_pred cccCCcCCcceecCHHHHHHHHHHh--------Cccce----------EEEeecCceeEecCCCccccccccccc-eeec
Q 004933 606 QVIHPIHDQCFYLSSEHKKKLKEEF--------GVEPW----------TFEQKLGEAVFIPAGCPHQVRNLKSCT-KVAV 666 (723)
Q Consensus 606 ~v~dPIHDQ~fYL~~~hk~kLkeEy--------GVepW----------tf~Q~~GeAVFIPAGcPHQVrNL~SCI-KVAl 666 (723)
...||-.+..||+-.-.-. + .. |-++| ++.=..||.||||+|.||..+|.-.-- ++.+
T Consensus 58 ~H~H~~~~E~~yVLeG~~~-~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~iP~g~~H~~~N~~~~~~~~~l 134 (239)
T 2xlg_A 58 PHIHYFINEWFWTPEGGIE-L--FHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHYMHGFVNPTDKTLPIVF 134 (239)
T ss_dssp SEEESSEEEEEEETTCCCE-E--EEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEECTTEEEEEECCSSSCEEEEE
T ss_pred CeECCCccEEEEEEEeEEE-E--EEEecccccCCCcccccccccCceeEEEECCCCEEEECCCCCEEEEeCCCCCEEEEE
Confidence 3466766777776544221 1 12 44555 788889999999999999999976532 2313
Q ss_pred ccc----------CccchHHHHHHHHHhh
Q 004933 667 DFV----------SPENVDECLRLTKEFR 685 (723)
Q Consensus 667 DFV----------SPEnV~ec~rLteEfR 685 (723)
=++ +|....++++...+..
T Consensus 135 ~~~~~~~~~~~~~~p~~~e~~f~~l~~~~ 163 (239)
T 2xlg_A 135 VWMRNEVAPDFPYHDGGMREYFQAVGPRI 163 (239)
T ss_dssp EEEECSSCTTCSCTTCSHHHHHHHHSCBC
T ss_pred EEEecccChhhccCcchHHHHHHHhhhhc
Confidence 334 8888999998887653
No 51
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=88.60 E-value=0.25 Score=46.77 Aligned_cols=41 Identities=24% Similarity=0.173 Sum_probs=29.9
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceeeccccCcc
Q 004933 632 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 672 (723)
Q Consensus 632 VepWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 672 (723)
|..=++.=..||+||||+|.+|+++|..+---+-+-+++|+
T Consensus 79 v~g~~~~l~~Gd~i~ip~~~~H~~~n~g~~~~~~l~i~~~~ 119 (156)
T 3kgz_A 79 VGETISDVAQGDLVFIPPMTWHQFRANRGDCLGFLCVVNAA 119 (156)
T ss_dssp ETTEEEEEETTCEEEECTTCCEEEECCSSSCEEEEEEEESS
T ss_pred ECCEEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEEeCC
Confidence 44556677889999999999999999876433344445554
No 52
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=88.45 E-value=0.15 Score=45.58 Aligned_cols=36 Identities=28% Similarity=0.731 Sum_probs=30.6
Q ss_pred CCCceecCCccc-ccccccccCCCC-CcccchhchHHH
Q 004933 120 NDERVYCNHCAT-SIIDLHRSCPKC-SYELCLTCCKEI 155 (723)
Q Consensus 120 ~DER~~CD~C~t-SI~D~HRsC~~C-sydLCL~CC~El 155 (723)
.-..+.||.|.. +|.-+-..|..| .||||..|...-
T Consensus 28 ~H~gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~ 65 (98)
T 2dip_A 28 KHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSY 65 (98)
T ss_dssp SCCCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTT
T ss_pred ccCCCCCcCCCCCCcccCeEECCCCCCccHHHHHHccC
Confidence 334589999996 899999999999 899999998754
No 53
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=88.35 E-value=0.17 Score=40.48 Aligned_cols=32 Identities=25% Similarity=0.788 Sum_probs=24.7
Q ss_pred EecCCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCc
Q 004933 9 VPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (723)
Q Consensus 9 v~C~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~C 47 (723)
+.-..|+ ..||..||.+|.. ....||.||..-
T Consensus 19 ~~~~~C~-H~fc~~Ci~~~~~------~~~~CP~Cr~~~ 50 (68)
T 1chc_A 19 SMALPCL-HAFCYVCITRWIR------QNPTCPLCKVPV 50 (68)
T ss_dssp EEETTTT-EEESTTHHHHHHH------HSCSTTTTCCCC
T ss_pred cEecCCC-CeeHHHHHHHHHh------CcCcCcCCChhh
Confidence 3456788 6799999999973 236899998754
No 54
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=88.35 E-value=0.23 Score=47.32 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=41.0
Q ss_pred cccCCcCCcceecCHHHHHHHHHHhCccceEEEeecCceeEecCCCcccccccc-ccceeeccccCcc
Q 004933 606 QVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLK-SCTKVAVDFVSPE 672 (723)
Q Consensus 606 ~v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GeAVFIPAGcPHQVrNL~-SCIKVAlDFVSPE 672 (723)
...|+ ++|-+|+-.-.- ++-|..=++.=..||+||||+|.||+++|.. +---+.+-+++|+
T Consensus 71 ~H~H~-~~E~~~Vl~G~~-----~~~i~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~~~ 132 (167)
T 3ibm_A 71 LERHE-HTHVVMVVRGHA-----EVVLDDRVEPLTPLDCVYIAPHAWHQIHATGANEPLGFLCIVDSD 132 (167)
T ss_dssp CBBCS-SCEEEEEEESEE-----EEEETTEEEEECTTCEEEECTTCCEEEEEESSSCCEEEEEEEESS
T ss_pred CccCC-CcEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEEeCC
Confidence 34566 677777654332 2345555777799999999999999999987 4333334455555
No 55
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.34 E-value=0.16 Score=41.35 Aligned_cols=28 Identities=29% Similarity=0.746 Sum_probs=23.1
Q ss_pred CCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCc
Q 004933 13 KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (723)
Q Consensus 13 ~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~C 47 (723)
.|+ ..||..||.+|+..- ..||+||..-
T Consensus 32 ~Cg-H~fC~~Ci~~~~~~~------~~CP~Cr~~~ 59 (71)
T 2d8t_A 32 PCK-HVFCYLCVKGASWLG------KRCALCRQEI 59 (71)
T ss_dssp TTT-EEEEHHHHHHCTTCS------SBCSSSCCBC
T ss_pred cCC-CHHHHHHHHHHHHCC------CcCcCcCchh
Confidence 587 779999999998653 6899998753
No 56
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=88.08 E-value=0.23 Score=40.83 Aligned_cols=28 Identities=29% Similarity=0.914 Sum_probs=22.5
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCC
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~ 46 (723)
..|+ ..||..||.+|...- ..||+||..
T Consensus 34 ~~C~-H~fc~~Ci~~~~~~~------~~CP~Cr~~ 61 (78)
T 2ect_A 34 LPCN-HLFHDSCIVPWLEQH------DSCPVCRKS 61 (78)
T ss_dssp CTTS-CEEETTTTHHHHTTT------CSCTTTCCC
T ss_pred eCCC-CeecHHHHHHHHHcC------CcCcCcCCc
Confidence 4687 689999999998532 589999875
No 57
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=87.53 E-value=0.2 Score=50.23 Aligned_cols=60 Identities=22% Similarity=0.180 Sum_probs=41.8
Q ss_pred ccCCcCCcceecCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceeeccccCcc
Q 004933 607 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 672 (723)
Q Consensus 607 v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 672 (723)
..|| +.|-+|+..-.- ++.|..=++.=..||+|+||+|+||+++|.-+---+.++.++|-
T Consensus 162 H~H~-~~e~~~Vl~G~~-----~~~i~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~p~ 221 (243)
T 3h7j_A 162 HKHR-NEQIGICIGGGY-----DMTVEGCTVEMKFGTAYFCEPREDHGAINRSEKESKSINIFFPP 221 (243)
T ss_dssp ECCS-SEEEEEECSSCE-----EEEETTEEEEECTTCEEEECTTCCEEEEECSSSCEEEEEEEESC
T ss_pred EeCC-CcEEEEEEECEE-----EEEECCEEEEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEcCC
Confidence 3565 567777655422 24455556677899999999999999999866555556666664
No 58
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.38 E-value=0.15 Score=40.85 Aligned_cols=29 Identities=17% Similarity=0.662 Sum_probs=22.7
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCC
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~ 46 (723)
+.|+ ..||..||.+|... -...||.||..
T Consensus 31 ~~Cg-H~fC~~Ci~~~~~~-----~~~~CP~Cr~~ 59 (66)
T 2ecy_A 31 TECG-HRFCESCMAALLSS-----SSPKCTACQES 59 (66)
T ss_dssp CSSS-CCCCHHHHHHHHTT-----SSCCCTTTCCC
T ss_pred CCCC-CHHHHHHHHHHHHh-----CcCCCCCCCcC
Confidence 5788 78999999999851 13479999865
No 59
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=87.24 E-value=0.21 Score=43.19 Aligned_cols=32 Identities=25% Similarity=0.701 Sum_probs=25.3
Q ss_pred EecCCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCc
Q 004933 9 VPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (723)
Q Consensus 9 v~C~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~C 47 (723)
|....|+ ..||..||.+|... ...||.||...
T Consensus 36 ~~~~~Cg-H~fC~~Ci~~~~~~------~~~CP~Cr~~~ 67 (99)
T 2y43_A 36 MIIPQCS-HNYCSLCIRKFLSY------KTQCPTCCVTV 67 (99)
T ss_dssp EECTTTC-CEEEHHHHHHHHTT------CCBCTTTCCBC
T ss_pred CEECCCC-CHhhHHHHHHHHHC------CCCCCCCCCcC
Confidence 3446788 88999999999874 25899998764
No 60
>2ozi_A Hypothetical protein RPA4178; APC6210, putative protein RPA4178, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris CGA009} PDB: 3lag_A*
Probab=87.13 E-value=0.18 Score=44.31 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.3
Q ss_pred EeecCceeEecCCCccccccccc
Q 004933 638 EQKLGEAVFIPAGCPHQVRNLKS 660 (723)
Q Consensus 638 ~Q~~GeAVFIPAGcPHQVrNL~S 660 (723)
.=..||++|+|||.+|+++|--+
T Consensus 62 ~l~aGd~~~~p~G~~H~~~N~g~ 84 (98)
T 2ozi_A 62 QLKTGRSYARKAGVQHDVRNEST 84 (98)
T ss_dssp CBCTTCCEEECTTCEEEEEECSS
T ss_pred EECCCCEEEECCCCceeCEECCC
Confidence 44689999999999999999765
No 61
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.12 E-value=0.23 Score=40.94 Aligned_cols=33 Identities=30% Similarity=0.822 Sum_probs=29.3
Q ss_pred eecCCccc-ccccccccCCCC-CcccchhchHHHh
Q 004933 124 VYCNHCAT-SIIDLHRSCPKC-SYELCLTCCKEIC 156 (723)
Q Consensus 124 ~~CD~C~t-SI~D~HRsC~~C-sydLCL~CC~ElR 156 (723)
+.||.|.. +|.-.-..|..| .||||..|...-+
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~ 46 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGH 46 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCCC
Confidence 78999996 599999999999 7999999998644
No 62
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.59 E-value=0.12 Score=43.09 Aligned_cols=30 Identities=23% Similarity=0.711 Sum_probs=24.7
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCcc
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 48 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~CN 48 (723)
+.|+ ..||..||.+|+.. ...||+||..-+
T Consensus 31 ~~Cg-H~fC~~Ci~~~~~~------~~~CP~Cr~~~~ 60 (81)
T 2csy_A 31 TKCR-HYFCESCALEHFRA------TPRCYICDQPTG 60 (81)
T ss_dssp CTTS-CEEEHHHHHHHHHH------CSBCSSSCCBCC
T ss_pred ccCC-CHhHHHHHHHHHHC------CCcCCCcCcccc
Confidence 5788 78999999999842 568999998765
No 63
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.32 E-value=0.25 Score=40.26 Aligned_cols=27 Identities=22% Similarity=0.949 Sum_probs=21.4
Q ss_pred CCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCC
Q 004933 13 KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (723)
Q Consensus 13 ~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~ 46 (723)
.|+ ..||..||.+|... ...||+||..
T Consensus 35 ~C~-H~f~~~Ci~~~~~~------~~~CP~Cr~~ 61 (74)
T 2ep4_A 35 PCK-HAFHRKCLIKWLEV------RKVCPLCNMP 61 (74)
T ss_dssp TTT-EEEEHHHHHHHHHH------CSBCTTTCCB
T ss_pred CCC-CEecHHHHHHHHHc------CCcCCCcCcc
Confidence 577 77999999999742 3589999863
No 64
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=86.10 E-value=0.35 Score=45.71 Aligned_cols=35 Identities=23% Similarity=0.596 Sum_probs=26.8
Q ss_pred eEecCCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCcc
Q 004933 8 VVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 48 (723)
Q Consensus 8 vv~C~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~CN 48 (723)
.|.+..|+ ..||..||.+|...- ...||.||....
T Consensus 67 p~~~~~Cg-H~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 67 TMTTKECL-HRFCADCIITALRSG-----NKECPTCRKKLV 101 (165)
T ss_dssp EEEETTTC-CEEEHHHHHHHHHTT-----CCBCTTTCCBCC
T ss_pred cCEeCCCC-ChhHHHHHHHHHHhC-----cCCCCCCCCcCC
Confidence 35566898 789999999997531 356999998754
No 65
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=85.94 E-value=0.26 Score=47.10 Aligned_cols=43 Identities=14% Similarity=0.060 Sum_probs=33.5
Q ss_pred hCccceEEEeecCceeEecCCCccccccccccceeeccccCccc
Q 004933 630 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 673 (723)
Q Consensus 630 yGVepWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPEn 673 (723)
+.|..=++.=..||+||||+|.||+.+|.-+--- .+-++.|..
T Consensus 139 ~~~~~~~~~l~~GD~i~i~~~~~H~~~n~~~~~~-~l~v~~~~~ 181 (192)
T 1y9q_A 139 VFFDEQWHELQQGEHIRFFSDQPHGYAAVTEKAV-FQNIVAYPR 181 (192)
T ss_dssp EEETTEEEEECTTCEEEEECSSSEEEEESSSCEE-EEEEEECCC
T ss_pred EEECCEEEEeCCCCEEEEcCCCCeEeECCCCCcE-EEEEEecCc
Confidence 5556677788999999999999999999855333 666777654
No 66
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=85.85 E-value=0.31 Score=42.82 Aligned_cols=32 Identities=22% Similarity=0.700 Sum_probs=25.7
Q ss_pred EecCCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCc
Q 004933 9 VPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (723)
Q Consensus 9 v~C~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~C 47 (723)
|....|+ ..||..||.+|...- ..||.||...
T Consensus 29 ~~~~~Cg-H~fC~~Ci~~~~~~~------~~CP~Cr~~~ 60 (108)
T 2ckl_A 29 TTIIECL-HSFCKTCIVRYLETS------KYCPICDVQV 60 (108)
T ss_dssp EEETTTC-CEEEHHHHHHHHTSC------SBCTTTCCBS
T ss_pred CEeCCCC-ChhhHHHHHHHHHhC------CcCcCCCccc
Confidence 4456888 889999999998752 7899998754
No 67
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=85.84 E-value=0.38 Score=41.45 Aligned_cols=37 Identities=19% Similarity=0.410 Sum_probs=26.6
Q ss_pred eEEEeecCceeEecCCCccccccccccceeeccccCccch
Q 004933 635 WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENV 674 (723)
Q Consensus 635 Wtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV 674 (723)
=++.=..||+++||+|.||..+|...|.=+ ++.|...
T Consensus 67 ~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~l---~i~~~~~ 103 (107)
T 2i45_A 67 GSMTIREGEMAVVPKSVSHRPRSENGCSLV---LIELSDP 103 (107)
T ss_dssp CEEEECTTEEEEECTTCCEEEEEEEEEEEE---EEECC--
T ss_pred cEEEECCCCEEEECCCCcEeeEeCCCeEEE---EEECCCc
Confidence 467778899999999999999996554322 4455443
No 68
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=85.83 E-value=0.29 Score=45.63 Aligned_cols=25 Identities=28% Similarity=0.237 Sum_probs=23.2
Q ss_pred eEEEeecCceeEecCCCcccccccc
Q 004933 635 WTFEQKLGEAVFIPAGCPHQVRNLK 659 (723)
Q Consensus 635 Wtf~Q~~GeAVFIPAGcPHQVrNL~ 659 (723)
-++.=..||+|+||+|.||+++|..
T Consensus 88 ~~~~l~~Gd~i~ip~~~~H~~~n~~ 112 (163)
T 1lr5_A 88 QEIPFFQNTTFSIPVNDPHQVWNSD 112 (163)
T ss_dssp EEEEECTTEEEEECTTCCEEEECCC
T ss_pred EEEEeCCCCEEEECCCCcEEeEeCC
Confidence 7788889999999999999999986
No 69
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.70 E-value=0.29 Score=37.65 Aligned_cols=28 Identities=29% Similarity=0.954 Sum_probs=21.4
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCC
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFC 43 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~C 43 (723)
+.|+ ..||..||.+|...+. -...||+|
T Consensus 31 ~~Cg-H~fC~~Ci~~~~~~~~---~~~~CP~C 58 (58)
T 2ecj_A 31 IECG-HNFCKACITRWWEDLE---RDFPCPVC 58 (58)
T ss_dssp CSSC-CCCCHHHHHHHTTSSC---CSCCCSCC
T ss_pred CCCC-CccCHHHHHHHHHhcC---CCCCCCCC
Confidence 4677 6799999999976532 24689988
No 70
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=85.46 E-value=0.26 Score=43.48 Aligned_cols=40 Identities=23% Similarity=0.440 Sum_probs=27.7
Q ss_pred ceEecCCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCcc
Q 004933 7 YVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 48 (723)
Q Consensus 7 ~vv~C~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~CN 48 (723)
.++.-..|+ ..||..||.+|...- ...-...||.||..-.
T Consensus 54 ~~~~~~~C~-H~Fh~~Ci~~wl~~~-~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 54 VVGRLTKCS-HAFHLLCLLAMYCNG-NKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CCEEESSSC-CEECHHHHHHHHHHT-CCSSCCBCTTTCCBSS
T ss_pred cceecCCCC-CcccHHHHHHHHHcc-cCCCCCcCCCCCCccC
Confidence 456678898 899999999997210 0012458999997643
No 71
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=85.44 E-value=0.22 Score=39.75 Aligned_cols=30 Identities=23% Similarity=0.623 Sum_probs=23.4
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCc
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~C 47 (723)
+.|+ ..||..||.+|+..- ...||.||..-
T Consensus 24 ~~Cg-H~fC~~Ci~~~~~~~-----~~~CP~Cr~~~ 53 (65)
T 1g25_A 24 NVCG-HTLCESCVDLLFVRG-----AGNCPECGTPL 53 (65)
T ss_dssp CTTC-CCEEHHHHHHHHHTT-----SSSCTTTCCCC
T ss_pred CCCC-CHhHHHHHHHHHHcC-----CCcCCCCCCcc
Confidence 5788 789999999997531 35799998753
No 72
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=85.16 E-value=0.15 Score=41.81 Aligned_cols=36 Identities=19% Similarity=0.485 Sum_probs=25.8
Q ss_pred CCCCCcccchhhhhhhCCCC-CHHHHHhhCCCCCCCcc
Q 004933 12 GKCRTKVYCIQCIKQWYPKM-SELDVAEICPFCRRNCN 48 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~l-s~~di~~~CP~Crg~CN 48 (723)
..|+ ..||..||.+|+..- +...-...||+||..-.
T Consensus 28 l~Cg-H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 28 LDCG-HSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CSSS-CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred CCCC-CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 3687 789999999998752 11122468999998754
No 73
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=85.10 E-value=0.37 Score=42.85 Aligned_cols=34 Identities=26% Similarity=0.817 Sum_probs=26.6
Q ss_pred ceEecCCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCc
Q 004933 7 YVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (723)
Q Consensus 7 ~vv~C~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~C 47 (723)
+.+.-+.|+ ..||..||.+|...- ..||+||..-
T Consensus 25 ~~~~~~~Cg-H~fc~~Ci~~~~~~~------~~CP~Cr~~~ 58 (133)
T 4ap4_A 25 RLIVSTECG-HVFCSQCLRDSLKNA------NTCPTCRKKI 58 (133)
T ss_dssp CCEEEETTC-CEEEHHHHHHHHTTC------SBCTTTCCBC
T ss_pred cCeEecCCC-ChhhHHHHHHHHHhC------CCCCCCCCcC
Confidence 445667898 789999999998643 3899998754
No 74
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=84.99 E-value=0.36 Score=44.85 Aligned_cols=41 Identities=20% Similarity=0.136 Sum_probs=30.7
Q ss_pred ccceEEEeecCceeEecCC-CccccccccccceeeccccCcc
Q 004933 632 VEPWTFEQKLGEAVFIPAG-CPHQVRNLKSCTKVAVDFVSPE 672 (723)
Q Consensus 632 VepWtf~Q~~GeAVFIPAG-cPHQVrNL~SCIKVAlDFVSPE 672 (723)
|..=++.=..||+|+||+| .+|+++|.-+---+.+-+.+|-
T Consensus 83 ~~~~~~~l~~Gd~i~i~~~~~~H~~~n~~~~~~~~l~v~~p~ 124 (162)
T 3l2h_A 83 MENDQYPIAPGDFVGFPCHAAAHSISNDGTETLVCLVIGQRL 124 (162)
T ss_dssp ETTEEEEECTTCEEEECTTSCCEEEECCSSSCEEEEEEEECC
T ss_pred ECCEEEEeCCCCEEEECCCCceEEeEeCCCCCEEEEEEECCC
Confidence 4445677889999999998 9999999766444455555553
No 75
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=84.92 E-value=0.4 Score=42.90 Aligned_cols=26 Identities=23% Similarity=0.846 Sum_probs=22.8
Q ss_pred CCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCc
Q 004933 13 KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (723)
Q Consensus 13 ~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~C 47 (723)
.|+ ..||..||.+|.. ..||.||...
T Consensus 40 ~Cg-H~fC~~Ci~~~~~--------~~CP~Cr~~~ 65 (117)
T 1jm7_B 40 GCE-HIFCSNCVSDCIG--------TGCPVCYTPA 65 (117)
T ss_dssp SSS-CCBCTTTGGGGTT--------TBCSSSCCBC
T ss_pred CCC-CHHHHHHHHHHhc--------CCCcCCCCcC
Confidence 688 8899999999986 6899999874
No 76
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=84.70 E-value=0.39 Score=46.03 Aligned_cols=30 Identities=23% Similarity=0.008 Sum_probs=24.9
Q ss_pred CccceEEEeecCceeEecCCCccccccccc
Q 004933 631 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 660 (723)
Q Consensus 631 GVepWtf~Q~~GeAVFIPAGcPHQVrNL~S 660 (723)
-|..=++.=..||+||||+|.||+++|..+
T Consensus 87 ~v~g~~~~l~~GD~i~ip~g~~H~~~n~~~ 116 (166)
T 3jzv_A 87 MVGRAVSAVAPYDLVTIPGWSWHQFRAPAD 116 (166)
T ss_dssp EETTEEEEECTTCEEEECTTCCEEEECCTT
T ss_pred EECCEEEEeCCCCEEEECCCCcEEeEeCCC
Confidence 345556777899999999999999999755
No 77
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=84.61 E-value=0.51 Score=43.45 Aligned_cols=25 Identities=40% Similarity=0.375 Sum_probs=22.0
Q ss_pred EEEeecCceeEecCCCccccccccc
Q 004933 636 TFEQKLGEAVFIPAGCPHQVRNLKS 660 (723)
Q Consensus 636 tf~Q~~GeAVFIPAGcPHQVrNL~S 660 (723)
++.=..||+|+||+|.||+++|..+
T Consensus 89 ~~~l~~Gd~i~ip~g~~H~~~n~~~ 113 (148)
T 2oa2_A 89 QEEVFDDYAILIPAGTWHNVRNTGN 113 (148)
T ss_dssp EEEEETTCEEEECTTCEEEEEECSS
T ss_pred eEEECCCCEEEECCCCcEEEEECCC
Confidence 3677899999999999999999854
No 78
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.59 E-value=0.56 Score=39.47 Aligned_cols=32 Identities=28% Similarity=0.858 Sum_probs=25.1
Q ss_pred eEecCCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCC
Q 004933 8 VVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (723)
Q Consensus 8 vv~C~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~ 46 (723)
++.-..|+ ..|+..||.+|...- ..||+||..
T Consensus 42 ~~~~~~C~-H~FH~~Ci~~Wl~~~------~~CP~CR~~ 73 (81)
T 2ecl_A 42 VVVWGECN-HSFHNCCMSLWVKQN------NRCPLCQQD 73 (81)
T ss_dssp CEEEETTS-CEEEHHHHHHHTTTC------CBCTTTCCB
T ss_pred EEEeCCCC-CccChHHHHHHHHhC------CCCCCcCCC
Confidence 44445788 789999999998753 489999965
No 79
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=84.58 E-value=0.39 Score=42.52 Aligned_cols=30 Identities=13% Similarity=0.157 Sum_probs=25.0
Q ss_pred CccceEEEeecCceeEecCCCccccccccc
Q 004933 631 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 660 (723)
Q Consensus 631 GVepWtf~Q~~GeAVFIPAGcPHQVrNL~S 660 (723)
.|..-++.=..||+|+||+|.||+.+|..+
T Consensus 62 ~i~~~~~~l~~Gd~i~i~~~~~H~~~~~~~ 91 (125)
T 3cew_A 62 TIDGEKIELQAGDWLRIAPDGKRQISAASD 91 (125)
T ss_dssp EETTEEEEEETTEEEEECTTCCEEEEEBTT
T ss_pred EECCEEEEeCCCCEEEECCCCcEEEEcCCC
Confidence 345567778899999999999999999843
No 80
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=84.11 E-value=0.43 Score=42.64 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=31.9
Q ss_pred cCCcCCcceecCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccc
Q 004933 608 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 660 (723)
Q Consensus 608 ~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GeAVFIPAGcPHQVrNL~S 660 (723)
.|+ ..+-+|+..-.- ++.|..=++.=..||+++||+|.||+.+|..+
T Consensus 65 ~H~-~~e~~~Vl~G~~-----~~~i~~~~~~l~~Gd~i~ip~g~~H~~~~~~~ 111 (126)
T 1vj2_A 65 SHP-WEHEIFVLKGKL-----TVLKEQGEETVEEGFYIFVEPNEIHGFRNDTD 111 (126)
T ss_dssp CCS-SCEEEEEEESEE-----EEECSSCEEEEETTEEEEECTTCCEEEECCSS
T ss_pred eCC-CcEEEEEEEeEE-----EEEECCEEEEECCCCEEEECCCCcEEeEeCCC
Confidence 455 455555543321 13344455667899999999999999999864
No 81
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=83.76 E-value=0.53 Score=44.99 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=42.3
Q ss_pred cCCcCCcceecCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceeeccccCccch
Q 004933 608 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENV 674 (723)
Q Consensus 608 ~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV 674 (723)
.|.=+++.+|+-+-.- +.-|.+=++.=..||+||||+|.||..+|...|..+++ ++|-+.
T Consensus 80 ~~~~~eE~~yVLeG~~-----~l~i~g~~~~l~~GD~i~iP~G~~h~~~n~~~a~~l~V--~~P~~~ 139 (151)
T 4axo_A 80 WTLNYDEIDYVIDGTL-----DIIIDGRKVSASSGELIFIPKGSKIQFSVPDYARFIYV--TYPADW 139 (151)
T ss_dssp EECSSEEEEEEEEEEE-----EEEETTEEEEEETTCEEEECTTCEEEEEEEEEEEEEEE--EECSCC
T ss_pred EeCCCcEEEEEEEeEE-----EEEECCEEEEEcCCCEEEECCCCEEEEEeCCCEEEEEE--ECCCCc
Confidence 3444677777644221 12345667888999999999999999999988877776 445443
No 82
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=83.67 E-value=0.14 Score=42.28 Aligned_cols=36 Identities=28% Similarity=0.648 Sum_probs=25.3
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCcc
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 48 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~CN 48 (723)
+.|+ ..||..||.+|+..-....-...||.||..-.
T Consensus 35 ~~Cg-H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 35 ADCN-HSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CTTS-CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CCCC-CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 4687 68999999999754211122568999987643
No 83
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=83.47 E-value=0.23 Score=40.92 Aligned_cols=28 Identities=29% Similarity=0.805 Sum_probs=21.9
Q ss_pred CCCCcccchhhhhhhCCCCCHHHHHhhCCCCCC
Q 004933 13 KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRR 45 (723)
Q Consensus 13 ~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg 45 (723)
.|+ ..||..||.+|...-. ...||+||.
T Consensus 33 ~Cg-H~fC~~Ci~~~~~~~~----~~~CP~Cr~ 60 (74)
T 2yur_A 33 CCG-NSYCDECIRTALLESD----EHTCPTCHQ 60 (74)
T ss_dssp SSC-CEECTTHHHHHHHHSS----SSCCSSSCC
T ss_pred CCC-CHHHHHHHHHHHHhcC----CCcCCCCCC
Confidence 388 8899999999985310 257999998
No 84
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=82.70 E-value=0.43 Score=42.41 Aligned_cols=33 Identities=30% Similarity=0.884 Sum_probs=25.9
Q ss_pred ceEecCCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCC
Q 004933 7 YVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (723)
Q Consensus 7 ~vv~C~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~ 46 (723)
+.+....|+ ..||..||.+|... ...||.||..
T Consensus 90 ~~~~~~~Cg-H~fc~~Ci~~~~~~------~~~CP~Cr~~ 122 (133)
T 4ap4_A 90 RLIVSTECG-HVFCSQCLRDSLKN------ANTCPTCRKK 122 (133)
T ss_dssp CCEEEETTS-BEEEHHHHHHHHHH------CSBCTTTCCB
T ss_pred cceEeCCCC-ChhhHHHHHHHHHc------CCCCCCCCCc
Confidence 345667888 88999999999742 4699999965
No 85
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=82.20 E-value=0.67 Score=44.99 Aligned_cols=40 Identities=13% Similarity=0.230 Sum_probs=30.7
Q ss_pred cceEEEeecCceeEecCCCccccccccccceeeccccCcc
Q 004933 633 EPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 672 (723)
Q Consensus 633 epWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 672 (723)
+.+++.=..||+|+||+|.||+.+|.-+--=+.+.+++|.
T Consensus 117 ~~~~~~l~~GD~v~ip~g~~H~~~N~g~~~~~~l~v~~~~ 156 (190)
T 1x82_A 117 DAKWISMEPGTVVYVPPYWAHRTVNIGDEPFIFLAIYPAD 156 (190)
T ss_dssp CEEEEEECTTCEEEECTTCEEEEEECSSSCEEEEEEEETT
T ss_pred cEEEEEECCCcEEEECCCCeEEEEECCcccEEEEEEECCC
Confidence 4566888999999999999999999865433445555554
No 86
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=82.13 E-value=0.64 Score=41.99 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=27.0
Q ss_pred ceEEEeecCceeEecCCCcccccccc-ccceeeccccCcc
Q 004933 634 PWTFEQKLGEAVFIPAGCPHQVRNLK-SCTKVAVDFVSPE 672 (723)
Q Consensus 634 pWtf~Q~~GeAVFIPAGcPHQVrNL~-SCIKVAlDFVSPE 672 (723)
+=++.=..||+||||||.+|..+|.. .+. .+--++|-
T Consensus 76 g~~~~l~~GD~v~ip~g~~H~~~~~~~~~~--~l~v~~P~ 113 (119)
T 3lwc_A 76 GETVTAGPGEIVYMPKGETVTIRSHEEGAL--TAYVTYPH 113 (119)
T ss_dssp TEEEEECTTCEEEECTTCEEEEEEEEEEEE--EEEEEECC
T ss_pred CEEEEECCCCEEEECCCCEEEEEcCCCCeE--EEEEECCC
Confidence 44667789999999999999999973 333 33445553
No 87
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=82.12 E-value=0.73 Score=41.15 Aligned_cols=61 Identities=25% Similarity=0.321 Sum_probs=40.0
Q ss_pred ccCCcCCcceecCHHHHHHHHHHhCccc-eEEEeecCceeEecCCCccccccccccceeeccccCccc
Q 004933 607 VIHPIHDQCFYLSSEHKKKLKEEFGVEP-WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 673 (723)
Q Consensus 607 v~dPIHDQ~fYL~~~hk~kLkeEyGVep-Wtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPEn 673 (723)
..|+-.++.+|+-.-.- ++-+.. -++.=..||+++||+|.||..+|..+-. ..+-+++|..
T Consensus 59 H~H~~~~E~~~vl~G~~-----~~~~~~~~~~~l~~Gd~~~ip~g~~H~~~~~~~~~-~~l~~~~p~~ 120 (134)
T 2o8q_A 59 HTHTVGFQLFYVLRGWV-----EFEYEDIGAVMLEAGGSAFQPPGVRHRELRHSDDL-EVLEIVSPAG 120 (134)
T ss_dssp EEECCSCEEEEEEESEE-----EEEETTTEEEEEETTCEEECCTTCCEEEEEECTTC-EEEEEESSTT
T ss_pred EECCCCcEEEEEEeCEE-----EEEECCcEEEEecCCCEEEECCCCcEEeEeCCCCe-EEEEEECCCc
Confidence 35665566666543322 133444 5778899999999999999999965423 3344566654
No 88
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.54 E-value=0.52 Score=38.04 Aligned_cols=31 Identities=26% Similarity=0.669 Sum_probs=23.3
Q ss_pred CCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCc
Q 004933 13 KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (723)
Q Consensus 13 ~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~C 47 (723)
.|+ ..||..||.+|...- .-...||+||..-
T Consensus 37 ~Cg-H~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 37 DCG-HNFCLKCITQIGETS---CGFFKCPLCKTSV 67 (73)
T ss_dssp TTC-CEEEHHHHHHHCSSS---CSCCCCSSSCCCC
T ss_pred CCC-ChhhHHHHHHHHHcC---CCCCCCCCCCCcC
Confidence 788 779999999998621 1135799999753
No 89
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=81.30 E-value=0.75 Score=41.33 Aligned_cols=31 Identities=23% Similarity=0.649 Sum_probs=23.7
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCcc
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 48 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~CN 48 (723)
..|+ ..||..||.+|...- ...||.||....
T Consensus 68 ~~Cg-H~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 68 TVCQ-HNVCKDCLDRSFRAQ-----VFSCPACRYDLG 98 (124)
T ss_dssp CTTS-CEEEHHHHHHHHHTT-----CCBCTTTCCBCC
T ss_pred eeCC-CcccHHHHHHHHhHC-----cCCCCCCCccCC
Confidence 3787 789999999998521 138999997654
No 90
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=81.03 E-value=1.4 Score=38.75 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=36.1
Q ss_pred hCccceEEEeecCceeEecCCCcccccccc--ccceeeccccCccchHHHHHHHHHhhcCCc
Q 004933 630 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLK--SCTKVAVDFVSPENVDECLRLTKEFRLLPK 689 (723)
Q Consensus 630 yGVepWtf~Q~~GeAVFIPAGcPHQVrNL~--SCIKVAlDFVSPEnV~ec~rLteEfR~Lp~ 689 (723)
+-|..=++.=..||+++||+|.+|+++|.. .+.-+++ +++|+-+. .+..+...-|.
T Consensus 67 ~~i~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~i-~f~~~~~~---~~~~~~~~~~~ 124 (128)
T 4i4a_A 67 IRINDEDFPVTKGDLIIIPLDSEHHVINNNQEDFHFYTI-WWDKESTL---NFLTRLEQDHH 124 (128)
T ss_dssp EEETTEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEE-EECHHHHH---HHHHHHHHC--
T ss_pred EEECCEEEEECCCcEEEECCCCcEEeEeCCCCCEEEEEE-EECHHHHH---HHHHhcccccc
Confidence 345566778899999999999999999973 2333343 44555444 35555554443
No 91
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.79 E-value=0.2 Score=40.40 Aligned_cols=28 Identities=32% Similarity=1.012 Sum_probs=22.2
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCC
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~ 46 (723)
..|+ ..||..||.+|... ...||.||..
T Consensus 30 ~~Cg-H~fc~~Ci~~~~~~------~~~CP~Cr~~ 57 (70)
T 2ecn_A 30 LPCA-HSFCQKCIDKWSDR------HRNCPICRLQ 57 (70)
T ss_dssp ETTT-EEECHHHHHHSSCC------CSSCHHHHHC
T ss_pred cCCC-CcccHHHHHHHHHC------cCcCCCcCCc
Confidence 4576 67999999999873 4689999854
No 92
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=80.78 E-value=0.58 Score=42.78 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=25.4
Q ss_pred EEeecCceeEecCCCccccccccccceeec
Q 004933 637 FEQKLGEAVFIPAGCPHQVRNLKSCTKVAV 666 (723)
Q Consensus 637 f~Q~~GeAVFIPAGcPHQVrNL~SCIKVAl 666 (723)
+.=..||+|+||+|.||..+|....-|+-+
T Consensus 89 ~~l~~GD~~~ip~g~~h~~~~~~~~rK~yv 118 (123)
T 3bcw_A 89 HAVKAGDAFIMPEGYTGRWEVDRHVKKIYF 118 (123)
T ss_dssp EEEETTCEEEECTTCCCEEEEEEEEEEEEE
T ss_pred EEECCCCEEEECCCCeEEEEECCceeEEEE
Confidence 445789999999999999999988777643
No 93
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=80.23 E-value=0.74 Score=43.90 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=32.3
Q ss_pred cCCcCCcceecCHHHHHHHHHHhCccc----eEEEeecCceeEecCCCccccccc
Q 004933 608 IHPIHDQCFYLSSEHKKKLKEEFGVEP----WTFEQKLGEAVFIPAGCPHQVRNL 658 (723)
Q Consensus 608 ~dPIHDQ~fYL~~~hk~kLkeEyGVep----Wtf~Q~~GeAVFIPAGcPHQVrNL 658 (723)
.||- ++-+|+-.-.- ++.|.. =++.=..||+|+||+|.||+++|.
T Consensus 137 ~h~~-~E~~~Vl~G~~-----~~~~~~~~~~~~~~l~~GD~~~~~~~~~H~~~n~ 185 (198)
T 2bnm_A 137 GHAG-NEFLFVLEGEI-----HMKWGDKENPKEALLPTGASMFVEEHVPHAFTAA 185 (198)
T ss_dssp CCSS-CEEEEEEESCE-----EEEESCTTSCEEEEECTTCEEEECTTCCEEEEES
T ss_pred cCCC-eEEEEEEeeeE-----EEEECCcCCcccEEECCCCEEEeCCCCceEEEec
Confidence 4443 56666643321 244555 677888999999999999999998
No 94
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=80.20 E-value=0.63 Score=46.17 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=34.2
Q ss_pred cCCcCCcceecCHHHHHHHHHHhCccceEEEeecCceeEecCCCcccccc-cccc
Q 004933 608 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRN-LKSC 661 (723)
Q Consensus 608 ~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GeAVFIPAGcPHQVrN-L~SC 661 (723)
.|| +++-+|+-.-.- ++.|.+=++.=..||+++||||+||.++| ...|
T Consensus 170 ~H~-~~e~~~Vl~G~~-----~~~i~g~~~~l~~Gd~i~ip~~~~H~~~~~~~~~ 218 (227)
T 3rns_A 170 KAP-GDALVTVLDGEG-----KYYVDGKPFIVKKGESAVLPANIPHAVEAETENF 218 (227)
T ss_dssp CCS-SEEEEEEEEEEE-----EEEETTEEEEEETTEEEEECTTSCEEEECCSSCE
T ss_pred ECC-CcEEEEEEeEEE-----EEEECCEEEEECCCCEEEECCCCcEEEEeCCCCE
Confidence 466 566666543321 24455556777899999999999999999 7654
No 95
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.11 E-value=0.19 Score=41.49 Aligned_cols=35 Identities=23% Similarity=0.536 Sum_probs=24.3
Q ss_pred CCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCcc
Q 004933 13 KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 48 (723)
Q Consensus 13 ~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~CN 48 (723)
.|+ ..||..||.+|+..-....-...||+||..-.
T Consensus 36 ~Cg-H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 36 DCG-HSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp SSS-CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCC-CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 677 67999999999743111111568999988754
No 96
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.07 E-value=0.55 Score=39.14 Aligned_cols=33 Identities=24% Similarity=0.617 Sum_probs=24.2
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCcc
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 48 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~CN 48 (723)
..|+ ..||..||.+|...- .-...||+||..-.
T Consensus 35 ~~Cg-H~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 35 LHCG-HTICRQCLEKLLASS---INGVRCPFCSKITR 67 (88)
T ss_dssp CSSS-CEEEHHHHHHHHHHC---SSCBCCTTTCCCBC
T ss_pred CCCC-ChhhHHHHHHHHHcC---CCCcCCCCCCCccc
Confidence 4787 789999999997531 01357999998643
No 97
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=80.02 E-value=0.34 Score=46.77 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=36.0
Q ss_pred cccCCcCCcceecCH--HHHHHHHHHhCccceEEEeecCceeEecCCCcccccc
Q 004933 606 QVIHPIHDQCFYLSS--EHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRN 657 (723)
Q Consensus 606 ~v~dPIHDQ~fYL~~--~hk~kLkeEyGVepWtf~Q~~GeAVFIPAGcPHQVrN 657 (723)
...|+-+++.||+-. ..- ++-|.+=++.=+.||+|+||+|.+|++++
T Consensus 60 ~H~H~~~~E~~yVLe~~G~g-----~v~idge~~~l~~GD~v~IPpg~~H~i~g 108 (157)
T 4h7l_A 60 THYHREHQEIYVVLDHAAHA-----TIELNGQSYPLTKLLAISIPPLVRHRIVG 108 (157)
T ss_dssp CBBCSSCEEEEEEEEECTTC-----EEEETTEEEECCTTEEEEECTTCCEEEES
T ss_pred ceECCCCcEEEEEEecCcEE-----EEEECCEEEEeCCCCEEEECCCCeEeeEC
Confidence 346787888888754 222 35556667888999999999999999985
No 98
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=79.66 E-value=1.1 Score=42.35 Aligned_cols=60 Identities=15% Similarity=0.104 Sum_probs=38.8
Q ss_pred cCCcCCcceecCHHHHHHHHHHhCccceEEEeecCceeEecCC--CccccccccccceeeccccCcc
Q 004933 608 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAG--CPHQVRNLKSCTKVAVDFVSPE 672 (723)
Q Consensus 608 ~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GeAVFIPAG--cPHQVrNL~SCIKVAlDFVSPE 672 (723)
.|+-.++-+|+..-.- ++-|..=++.=..||+|+||+| .+|+++|.-+---+.+-+.+|-
T Consensus 61 ~H~~~eE~~~Vl~G~~-----~~~~~~~~~~l~~GD~i~ip~~~~~~H~~~n~~~~~~~~l~v~~p~ 122 (163)
T 3i7d_A 61 YHMEQDEFVMVTEGAL-----VLVDDQGEHPMVPGDCAAFPAGDPNGHQFVNRTDAPATFLVVGTRT 122 (163)
T ss_dssp EESSCCEEEEEEESCE-----EEEETTEEEEECTTCEEEECTTCCCCBEEECCSSSCEEEEEEEECC
T ss_pred cCCCCcEEEEEEECEE-----EEEECCEEEEeCCCCEEEECCCCCcceEEEECCCCCEEEEEEECCC
Confidence 3443355566543322 1334455777889999999999 9999999866544455555553
No 99
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=79.22 E-value=0.85 Score=46.92 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=39.0
Q ss_pred hCccceEEEeecCceeEecCCCccccccccccceeeccccCccchHHHHHH
Q 004933 630 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRL 680 (723)
Q Consensus 630 yGVepWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rL 680 (723)
+-|..-++.=..||.++||+|+||+.+|... --..+-+++|....+-++-
T Consensus 252 ~~i~~~~~~l~~GD~~~ip~~~~H~~~n~~~-~~~~l~v~~~~~~~~~~~~ 301 (337)
T 1y3t_A 252 MWTDGQEIQLNPGDFLHVPANTVHSYRLDSH-YTKMVGVLVPGLFEPFFRT 301 (337)
T ss_dssp EEETTEEEEECTTCEEEECTTCCEEEEECSS-SEEEEEEEESSTTTHHHHH
T ss_pred EEECCEEEEECCCCEEEECCCCeEEEEECCC-CeEEEEEEcCccHHHHHHH
Confidence 4455667888999999999999999999976 4445566788888765543
No 100
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=79.20 E-value=0.65 Score=41.12 Aligned_cols=30 Identities=33% Similarity=0.866 Sum_probs=23.5
Q ss_pred CCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCcc
Q 004933 13 KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 48 (723)
Q Consensus 13 ~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~CN 48 (723)
.|+ ..||..||.+|...- ...||+||..-.
T Consensus 32 ~Cg-H~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~ 61 (115)
T 3l11_A 32 PCN-HTLCKPCFQSTVEKA-----SLCCPFCRRRVS 61 (115)
T ss_dssp TTS-CEECHHHHCCCCCTT-----TSBCTTTCCBCH
T ss_pred CCC-CHHhHHHHHHHHhHC-----cCCCCCCCcccC
Confidence 788 789999999998642 267999987543
No 101
>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3
Probab=78.95 E-value=0.67 Score=48.99 Aligned_cols=17 Identities=29% Similarity=0.651 Sum_probs=14.9
Q ss_pred eecCceeEecCCCcccc
Q 004933 639 QKLGEAVFIPAGCPHQV 655 (723)
Q Consensus 639 Q~~GeAVFIPAGcPHQV 655 (723)
=++|||+|||||.||=.
T Consensus 162 l~pGd~~~ipaGt~HA~ 178 (319)
T 1qwr_A 162 IKPGDFYYVPSGTLHAL 178 (319)
T ss_dssp CCTTCEEEECTTCCEEE
T ss_pred cCCCCEEEcCCCCceEe
Confidence 35899999999999974
No 102
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=78.83 E-value=1.3 Score=43.09 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=29.8
Q ss_pred eEEEeecCceeEecCCCccccccccccceeeccccCccc
Q 004933 635 WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 673 (723)
Q Consensus 635 Wtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPEn 673 (723)
.++.=..||+++||+|.+|..+|.-.---+.+-+.++.+
T Consensus 119 ~~~~l~~GD~~~iP~g~~H~~~N~g~~~~~~l~v~~~~~ 157 (201)
T 1fi2_A 119 YSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQN 157 (201)
T ss_dssp EEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEESSSC
T ss_pred EEEEECCCCEEEECCCCeEEEEeCCCCCEEEEEEECCCC
Confidence 366778899999999999999998654444555566555
No 103
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=78.62 E-value=0.7 Score=38.20 Aligned_cols=25 Identities=32% Similarity=0.740 Sum_probs=20.9
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCC
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~ 46 (723)
..|+-..||..|+.+| ..||+||..
T Consensus 40 ~pCgH~~~C~~C~~~~----------~~CP~Cr~~ 64 (74)
T 4ic3_A 40 VPCGHLVTCKQCAEAV----------DKCPMCYTV 64 (74)
T ss_dssp ETTCCBCCCHHHHTTC----------SBCTTTCCB
T ss_pred cCCCChhHHHHhhhcC----------ccCCCcCcC
Confidence 4788445999999999 789999964
No 104
>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3
Probab=78.19 E-value=0.73 Score=48.38 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=14.9
Q ss_pred eecCceeEecCCCcccc
Q 004933 639 QKLGEAVFIPAGCPHQV 655 (723)
Q Consensus 639 Q~~GeAVFIPAGcPHQV 655 (723)
=++|||+|||||.||=.
T Consensus 162 l~pGd~~~ipaGt~HA~ 178 (300)
T 1zx5_A 162 TTPYDTFVIRPGIPHAG 178 (300)
T ss_dssp CCTTCEEEECTTCCEEE
T ss_pred CCCCCEEEcCCCCceEc
Confidence 36899999999999964
No 105
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=77.77 E-value=1.3 Score=40.97 Aligned_cols=35 Identities=20% Similarity=0.132 Sum_probs=26.0
Q ss_pred EEeecCceeEecCCCccccccccccceeeccccCc
Q 004933 637 FEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 671 (723)
Q Consensus 637 f~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSP 671 (723)
+.=..||+++||+|.||+.+|..+---+.+-++.|
T Consensus 89 ~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~~ 123 (147)
T 2f4p_A 89 RILKKGDVVEIPPNVVHWHGAAPDEELVHIGISTQ 123 (147)
T ss_dssp EEEETTCEEEECTTCCEEEEEBTTBCEEEEEEECC
T ss_pred EEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEcc
Confidence 56679999999999999999986543334444444
No 106
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=77.59 E-value=0.56 Score=40.93 Aligned_cols=33 Identities=21% Similarity=0.741 Sum_probs=24.0
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCcc
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 48 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~CN 48 (723)
+.|+ ..||..||.+|...-+ -...||+||....
T Consensus 37 ~~Cg-H~fC~~Ci~~~~~~~~---~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 37 TKCD-HIFCKFCMLKLLNQKK---GPSQCPLCKNDIT 69 (112)
T ss_dssp CTTS-CCCCSHHHHHHHHSSS---SSCCCTTTSCCCC
T ss_pred CCCC-CHHHHHHHHHHHHhCC---CCCCCcCCCCcCC
Confidence 4788 7899999999986421 1147999987543
No 107
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=76.09 E-value=0.93 Score=41.00 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=25.6
Q ss_pred hCccceEEEeecCceeEecCCCccccccccc
Q 004933 630 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 660 (723)
Q Consensus 630 yGVepWtf~Q~~GeAVFIPAGcPHQVrNL~S 660 (723)
+.|..-++.=..||+++||+|.||+.+|.-+
T Consensus 91 ~~i~~~~~~l~~Gd~i~i~~~~~H~~~n~~~ 121 (133)
T 1o4t_A 91 FHDNGKDVPIKAGDVCFTDSGESHSIENTGN 121 (133)
T ss_dssp EEETTEEEEEETTEEEEECTTCEEEEECCSS
T ss_pred EEECCEEEEeCCCcEEEECCCCcEEeEECCC
Confidence 3455667777899999999999999999754
No 108
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=75.66 E-value=0.77 Score=37.67 Aligned_cols=30 Identities=17% Similarity=0.365 Sum_probs=23.4
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCc
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~C 47 (723)
+.|+ ..||..||.+|...- ...||.||..-
T Consensus 24 ~~Cg-H~fc~~Ci~~~~~~~-----~~~CP~C~~~~ 53 (78)
T 1t1h_A 24 VSTG-QTYERSSIQKWLDAG-----HKTCPKSQETL 53 (78)
T ss_dssp ETTT-EEEEHHHHHHHHTTT-----CCBCTTTCCBC
T ss_pred cCCC-CeecHHHHHHHHHHC-----cCCCCCCcCCC
Confidence 3688 889999999999631 35799998653
No 109
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=74.85 E-value=0.96 Score=40.54 Aligned_cols=32 Identities=28% Similarity=0.884 Sum_probs=25.3
Q ss_pred eEecCCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCC
Q 004933 8 VVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (723)
Q Consensus 8 vv~C~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~ 46 (723)
.+.-..|+ ..|+..||.+|... ...||.||..
T Consensus 67 ~~~~~~C~-H~FH~~Ci~~Wl~~------~~~CP~Cr~~ 98 (106)
T 3dpl_R 67 TVAWGVCN-HAFHFHCISRWLKT------RQVCPLDNRE 98 (106)
T ss_dssp CEEEETTS-CEEEHHHHHHHHTT------CSBCSSSCSB
T ss_pred eEeecccC-cEECHHHHHHHHHc------CCcCcCCCCc
Confidence 34456788 88999999999764 4689999974
No 110
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=74.48 E-value=0.83 Score=38.66 Aligned_cols=30 Identities=30% Similarity=0.758 Sum_probs=22.4
Q ss_pred CCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCc
Q 004933 13 KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (723)
Q Consensus 13 ~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~C 47 (723)
.|+ ..||..||.+|+..-. ...||.||...
T Consensus 31 ~Cg-H~fC~~Ci~~~~~~~~----~~~CP~Cr~~~ 60 (92)
T 3ztg_A 31 CCG-NSYCDECIRTALLESD----EHTCPTCHQND 60 (92)
T ss_dssp TTC-CEECHHHHHHHHHHCT----TCCCTTTCCSS
T ss_pred CCC-CHHHHHHHHHHHHhcC----CCcCcCCCCcC
Confidence 388 8899999999974211 25899999754
No 111
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=74.46 E-value=0.83 Score=43.05 Aligned_cols=33 Identities=21% Similarity=0.613 Sum_probs=25.0
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCcccc
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCS 50 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~CNCk 50 (723)
+.|+ ..||..||.+|...- ...||+||....-.
T Consensus 94 ~~Cg-H~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 94 TECF-HNVCKDCLQRSFKAQ-----VFSCPACRHDLGQN 126 (150)
T ss_dssp CTTS-CEEEHHHHHHHHHTT-----CCBCTTTCCBCCTT
T ss_pred cCCC-CchhHHHHHHHHHhC-----CCcCCCCCccCCCC
Confidence 6888 789999999998631 13699999875543
No 112
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=74.37 E-value=1.1 Score=44.55 Aligned_cols=56 Identities=11% Similarity=0.063 Sum_probs=40.4
Q ss_pred CcccCCcCCcceecCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccccceeec
Q 004933 605 EQVIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAV 666 (723)
Q Consensus 605 ~~v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAl 666 (723)
....|| +++.+|+-.--- ++.|.+=++.=..||.++||||.||-++|+..|+=+..
T Consensus 51 ~~h~h~-~~~~~~Vl~G~~-----~~~i~~~~~~l~~Gd~~~~p~~~~H~~~a~~~~~~l~i 106 (227)
T 3rns_A 51 TAEAML-GNRYYYCFNGNG-----EIFIENNKKTISNGDFLEITANHNYSIEARDNLKLIEI 106 (227)
T ss_dssp EECSCS-SCEEEEEEESEE-----EEEESSCEEEEETTEEEEECSSCCEEEEESSSEEEEEE
T ss_pred CccccC-CCEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCCEEEEECCCcEEEEE
Confidence 345677 788877643221 24455556677889999999999999999988765544
No 113
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=74.02 E-value=0.97 Score=45.64 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=32.8
Q ss_pred cCCcCCcceecCHHHHHHHHHHhCccceEEEeecCceeEecCCCccccccccc
Q 004933 608 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 660 (723)
Q Consensus 608 ~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GeAVFIPAGcPHQVrNL~S 660 (723)
.|+-.++-+|+-.-.- ++.|..=++.=..||+||||||+||+.+|.-+
T Consensus 196 ~H~~~~E~~~Vl~G~~-----~~~i~~~~~~l~~GD~i~~~~~~~H~~~n~g~ 243 (261)
T 1rc6_A 196 ETHVQEHGAYILSGQG-----VYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGR 243 (261)
T ss_dssp EEESSCEEEEEEESEE-----EEESSSCEEEEETTCEEEECSSEEEEEEEC--
T ss_pred cCCCceEEEEEEEeEE-----EEEECCEEEEeCCCCEEEECCCCcEEeEeCCC
Confidence 3444455666533221 35566667888999999999999999999854
No 114
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=73.95 E-value=0.83 Score=35.70 Aligned_cols=26 Identities=23% Similarity=0.677 Sum_probs=20.3
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCc
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~C 47 (723)
..|+ ..||..||.+| ...||+||..-
T Consensus 22 l~Cg-H~fC~~Ci~~~---------~~~CP~Cr~~~ 47 (56)
T 1bor_A 22 LPCL-HTLCSGCLEAS---------GMQCPICQAPW 47 (56)
T ss_dssp STTS-CCSBTTTCSSS---------SSSCSSCCSSS
T ss_pred cCCC-CcccHHHHccC---------CCCCCcCCcEe
Confidence 4577 68999999985 45799998753
No 115
>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*
Probab=73.38 E-value=1.2 Score=48.68 Aligned_cols=16 Identities=44% Similarity=0.659 Sum_probs=14.6
Q ss_pred eecCceeEecCCCccc
Q 004933 639 QKLGEAVFIPAGCPHQ 654 (723)
Q Consensus 639 Q~~GeAVFIPAGcPHQ 654 (723)
=++|||+|||||.||=
T Consensus 244 l~pGd~~fipAG~~HA 259 (394)
T 2wfp_A 244 LNPGEAMFLFAETPHA 259 (394)
T ss_dssp ECTTCEEEECTTCCEE
T ss_pred CCCCCEEEcCCCCceE
Confidence 3789999999999996
No 116
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=73.32 E-value=1.7 Score=40.06 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=28.3
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceeec
Q 004933 632 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAV 666 (723)
Q Consensus 632 VepWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAl 666 (723)
+.+=++.=+.||++|||+|.||..+|...+.++.+
T Consensus 90 ~~g~~~~l~~GD~i~~p~g~~h~~~~~~~~~~l~v 124 (133)
T 2pyt_A 90 HEGETMIAKAGDVMFIPKGSSIEFGTPTSVRFLYV 124 (133)
T ss_dssp ETTEEEEEETTCEEEECTTCEEEEEEEEEEEEEEE
T ss_pred ECCEEEEECCCcEEEECCCCEEEEEeCCCEEEEEE
Confidence 34556777899999999999999999877766554
No 117
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=73.24 E-value=0.59 Score=41.82 Aligned_cols=29 Identities=21% Similarity=0.509 Sum_probs=21.9
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCC
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~ 46 (723)
+.|+ ..||..||.+|...- ...||.||..
T Consensus 34 ~~Cg-H~fC~~Ci~~~~~~~-----~~~CP~Cr~~ 62 (118)
T 3hct_A 34 TPCG-HRFCKACIIKSIRDA-----GHKCPVDNEI 62 (118)
T ss_dssp CTTS-CEEEHHHHHHHHHHH-----CSBCTTTCCB
T ss_pred CCcC-ChhhHHHHHHHHhhC-----CCCCCCCCCC
Confidence 4688 789999999997421 1289999854
No 118
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=73.01 E-value=1.4 Score=43.98 Aligned_cols=48 Identities=23% Similarity=0.147 Sum_probs=34.5
Q ss_pred ccCCcCCcceecCHHHHHHHHHHhCccceEEEeecCceeE-ecCCCccccccccc
Q 004933 607 VIHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVF-IPAGCPHQVRNLKS 660 (723)
Q Consensus 607 v~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GeAVF-IPAGcPHQVrNL~S 660 (723)
..|| +.|-+|+-.--- ++-|..=++.=..||+|| ||+|.||+++|..+
T Consensus 50 H~H~-~~e~~~Vl~G~~-----~~~~~~~~~~l~~Gd~i~~ip~~~~H~~~n~~~ 98 (243)
T 3h7j_A 50 HQHK-EVQIGMVVSGEL-----MMTVGDVTRKMTALESAYIAPPHVPHGARNDTD 98 (243)
T ss_dssp ECCS-SEEEEEEEESEE-----EEEETTEEEEEETTTCEEEECTTCCEEEEECSS
T ss_pred EECC-CcEEEEEEEeEE-----EEEECCEEEEECCCCEEEEcCCCCcEeeEeCCC
Confidence 3566 677777644322 234445566778999997 99999999999877
No 119
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=72.64 E-value=1.5 Score=44.97 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=35.7
Q ss_pred hCccceEEEeecCceeEecCCCccccccccccceeeccccCccchHHHH
Q 004933 630 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECL 678 (723)
Q Consensus 630 yGVepWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~ 678 (723)
+.|..-++.=..||.|+||+|.||..+|...- -..+.+++|....+-+
T Consensus 80 ~~~~~~~~~l~~Gd~~~~p~~~~H~~~n~~~~-~~~~~~~~p~~~~~~~ 127 (337)
T 1y3t_A 80 LTLDGERYLLISGDYANIPAGTPHSYRMQSHR-TRLVSYTMKGNVAHLY 127 (337)
T ss_dssp EEETTEEEEECTTCEEEECTTCCEEEEECSTT-EEEEEEEETTSSTHHH
T ss_pred EEECCEEEEECCCCEEEECCCCcEEEEECCCC-eEEEEEECCCCHHHHH
Confidence 34556677888999999999999999998762 3345556776666644
No 120
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=71.52 E-value=0.78 Score=40.69 Aligned_cols=30 Identities=33% Similarity=0.945 Sum_probs=23.6
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCc
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~C 47 (723)
+.|+ ..||..||.+|...- ...||.||...
T Consensus 39 ~~Cg-H~fC~~Ci~~~~~~~-----~~~CP~Cr~~~ 68 (116)
T 1rmd_A 39 TSCK-HLFCRICILRCLKVM-----GSYCPSCRYPC 68 (116)
T ss_dssp CTTS-CEEEHHHHHHHHHHT-----CSBCTTTCCBC
T ss_pred cCCC-CcccHHHHHHHHhHC-----cCcCCCCCCCC
Confidence 5888 889999999998532 34799998753
No 121
>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3
Probab=71.36 E-value=1.4 Score=48.86 Aligned_cols=16 Identities=44% Similarity=0.675 Sum_probs=14.6
Q ss_pred eecCceeEecCCCccc
Q 004933 639 QKLGEAVFIPAGCPHQ 654 (723)
Q Consensus 639 Q~~GeAVFIPAGcPHQ 654 (723)
=++|||+|||||.||=
T Consensus 270 L~pGea~flpAg~~HA 285 (440)
T 1pmi_A 270 LNKGEAMFLQAKDPHA 285 (440)
T ss_dssp ECTTCEEEECTTCCEE
T ss_pred cCCCCEEecCCCCccc
Confidence 5689999999999996
No 122
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=71.11 E-value=1.4 Score=44.84 Aligned_cols=31 Identities=13% Similarity=0.314 Sum_probs=26.3
Q ss_pred hCccceEEEeecCceeEecCCCccccccccc
Q 004933 630 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 660 (723)
Q Consensus 630 yGVepWtf~Q~~GeAVFIPAGcPHQVrNL~S 660 (723)
+.|..-++.=..||+|+||||+||+.+|.-.
T Consensus 216 ~~i~~~~~~l~~GD~i~i~~~~~H~~~n~~~ 246 (274)
T 1sef_A 216 YNLDNEWYPVEKGDYIFMSAYVPQAAYAVGR 246 (274)
T ss_dssp EEETTEEEEEETTCEEEECTTCCEEEEEECS
T ss_pred EEECCEEEEECCCCEEEECCCCCEEEEeCCC
Confidence 4555667888999999999999999999755
No 123
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=70.50 E-value=1.7 Score=38.25 Aligned_cols=29 Identities=14% Similarity=0.027 Sum_probs=24.1
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCC
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~ 46 (723)
..|+...||-.||.+|... ...||+|+..
T Consensus 38 ~~cG~htf~r~cI~~~l~~------~~~cP~~~~~ 66 (98)
T 1wgm_A 38 LPSSRVTVDRSTIARHLLS------DQTDPFNRSP 66 (98)
T ss_dssp CTTTCCEEEHHHHHHHTTT------SCBCTTTCSB
T ss_pred CCCCCeEECHHHHHHHHHh------CCCCCCCCCC
Confidence 5788889999999999875 2589999854
No 124
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=70.48 E-value=1.5 Score=46.55 Aligned_cols=69 Identities=16% Similarity=0.179 Sum_probs=49.8
Q ss_pred ccCCcCCcceecCHHHHHHHHHHhCccc-----eEEEeecCceeEecCCCccccccccccceeeccccCccchHHHHHHH
Q 004933 607 VIHPIHDQCFYLSSEHKKKLKEEFGVEP-----WTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLT 681 (723)
Q Consensus 607 v~dPIHDQ~fYL~~~hk~kLkeEyGVep-----Wtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLt 681 (723)
..|+-.++.||+-.-.- ++-|.. -++.=..||.|+||+|.||..+|.-.-. ..+-.++|....+-++-.
T Consensus 66 H~H~~~~E~~~Vl~G~~-----~~~v~~~~g~~~~~~L~~GD~v~ip~g~~H~~~n~~~~~-~~l~v~~p~~~~~~f~~l 139 (350)
T 1juh_A 66 HIHQKHYENFYCNKGSF-----QLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDT-EMTGVIVPGGFEDLFYYL 139 (350)
T ss_dssp EECSSCEEEEEEEESEE-----EEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECSTTE-EEEEEEESSCTTHHHHHH
T ss_pred ccCCCceEEEEEEEEEE-----EEEECCcCCceEEEEECCCCEEEECCCCcEEEEeCCCCC-EEEEEEcCccHHHHHHHh
Confidence 45666667777643322 244555 7788899999999999999999986554 667788888876655443
No 125
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=70.44 E-value=2.1 Score=41.46 Aligned_cols=29 Identities=24% Similarity=0.115 Sum_probs=24.9
Q ss_pred ccceEEEeecCceeEecCCCccccccccc
Q 004933 632 VEPWTFEQKLGEAVFIPAGCPHQVRNLKS 660 (723)
Q Consensus 632 VepWtf~Q~~GeAVFIPAGcPHQVrNL~S 660 (723)
|..=+|.=..||+++||||.||..+|.-+
T Consensus 125 l~g~~~~L~~Gds~~iP~g~~H~~~N~~d 153 (166)
T 2vpv_A 125 VCKNKFLSVKGSTFQIPAFNEYAIANRGN 153 (166)
T ss_dssp ETTEEEEEETTCEEEECTTCEEEEEECSS
T ss_pred ECCEEEEEcCCCEEEECCCCCEEEEECCC
Confidence 44557778899999999999999999765
No 126
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=69.06 E-value=2.4 Score=45.24 Aligned_cols=40 Identities=15% Similarity=0.027 Sum_probs=30.7
Q ss_pred ccceEEEeecCceeEecCCCccccccccccceeeccccCc
Q 004933 632 VEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 671 (723)
Q Consensus 632 VepWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSP 671 (723)
|.+-++.=..||+|+||+|.+|+.+|.-+---+-++|..|
T Consensus 136 v~g~~~~l~~GD~~~iP~g~~H~~~n~~~~~~~~l~v~d~ 175 (354)
T 2d40_A 136 VDGERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGLDL 175 (354)
T ss_dssp ETTEEEECCTTCEEEECTTSCEEEECCSSSCEEEEEEECH
T ss_pred ECCEEEEEcCCCEEEECCCCcEEeEeCCCCCEEEEEEECc
Confidence 4556788889999999999999999985532344666655
No 127
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=68.84 E-value=1.6 Score=45.27 Aligned_cols=29 Identities=10% Similarity=0.264 Sum_probs=22.9
Q ss_pred hCccceEEEeecCceeEecCCCccccccc
Q 004933 630 FGVEPWTFEQKLGEAVFIPAGCPHQVRNL 658 (723)
Q Consensus 630 yGVepWtf~Q~~GeAVFIPAGcPHQVrNL 658 (723)
|.+..=.+.=+.||++|||+||||+..|.
T Consensus 220 y~l~~~~~~V~~GD~i~~~~~~~h~~~n~ 248 (266)
T 4e2q_A 220 YRLGDNWYPVQAGDVIWMAPFVPQWYAAL 248 (266)
T ss_dssp EEETTEEEEEETTCEEEECTTCCEEEEEE
T ss_pred EEECCEEEEecCCCEEEECCCCcEEEEeC
Confidence 44444455667899999999999999886
No 128
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}
Probab=68.56 E-value=3 Score=46.88 Aligned_cols=42 Identities=14% Similarity=0.239 Sum_probs=34.2
Q ss_pred hCccceEEEeecCceeEecCCCccccccccc--cceeeccccCc
Q 004933 630 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS--CTKVAVDFVSP 671 (723)
Q Consensus 630 yGVepWtf~Q~~GeAVFIPAGcPHQVrNL~S--CIKVAlDFVSP 671 (723)
.+-..+.++-.+||..|||.|.+|||+++-. +|.++.-+-.+
T Consensus 223 ~~~p~~e~~L~pGDvLYiP~g~~H~~~s~~~~~SlhlTi~~~~~ 266 (489)
T 4diq_A 223 LGEPVLQTVLEPGDLLYFPRGFIHQAECQDGVHSLHLTLSTYQR 266 (489)
T ss_dssp CCCCSEEEEECTTCEEEECTTCEEEEEBCSSCCEEEEEEEECTT
T ss_pred ccCcceEEEECCCCEEEECCCCceEEEecCCCceEEEeecccCc
Confidence 3567789999999999999999999999954 56666665543
No 129
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=68.09 E-value=1.7 Score=45.99 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=23.2
Q ss_pred ceEEEeecCceeEecCCCccccccccc
Q 004933 634 PWTFEQKLGEAVFIPAGCPHQVRNLKS 660 (723)
Q Consensus 634 pWtf~Q~~GeAVFIPAGcPHQVrNL~S 660 (723)
.-++.=..||+++||+|.||+++|.-+
T Consensus 300 ~~~~~l~~GD~~~ip~~~~H~~~n~~~ 326 (385)
T 1j58_A 300 ARTFNYQAGDVGYVPFAMGHYVENIGD 326 (385)
T ss_dssp EEEEEEESSCEEEECTTCBEEEEECSS
T ss_pred EEEEEEcCCCEEEECCCCeEEEEECCC
Confidence 446677799999999999999999854
No 130
>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}
Probab=67.97 E-value=3 Score=46.10 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=27.8
Q ss_pred HhCccceEEEeecCceeEecCCCcccccccc
Q 004933 629 EFGVEPWTFEQKLGEAVFIPAGCPHQVRNLK 659 (723)
Q Consensus 629 EyGVepWtf~Q~~GeAVFIPAGcPHQVrNL~ 659 (723)
++|-..+.++=.+||+.|||+|.+|+|+.+-
T Consensus 193 ~~~~~~~~~~L~pGD~LYiP~g~~H~~~s~~ 223 (442)
T 2xdv_A 193 RIGRPVHEFMLKPGDLLYFPRGTIHQADTPA 223 (442)
T ss_dssp TSCSCSEEEEECTTCEEEECTTCEEEEECCS
T ss_pred hcCCcceEEEECCCcEEEECCCceEEEEecC
Confidence 3566778999999999999999999999986
No 131
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.21 E-value=0.59 Score=36.85 Aligned_cols=27 Identities=30% Similarity=0.717 Sum_probs=19.9
Q ss_pred CCCCcccchhhhhhhCCCCCHHHHHhhCCCC
Q 004933 13 KCRTKVYCIQCIKQWYPKMSELDVAEICPFC 43 (723)
Q Consensus 13 ~C~~k~fC~~CI~~wYp~ls~~di~~~CP~C 43 (723)
.|+ ..||..||.+|... ..-...||.|
T Consensus 37 ~Cg-H~fC~~Ci~~~~~~---~~~~~~CP~C 63 (63)
T 2ysj_A 37 DCG-HNFCLKCITQIGET---SCGFFKCPLC 63 (63)
T ss_dssp TTS-SEECHHHHHHHHHH---CSSCCCCSCC
T ss_pred CCC-CcchHHHHHHHHHc---CCCCCcCcCC
Confidence 787 77999999999852 0123479988
No 132
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=67.04 E-value=3.3 Score=43.27 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=35.0
Q ss_pred EEEeecCceeEecCCCccccccccccceeeccccCccchHHHHHHHHHhhcCCc
Q 004933 636 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPK 689 (723)
Q Consensus 636 tf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLteEfR~Lp~ 689 (723)
++.=..||+++||+|.||+.+|.-+---+.+-+++|.+... +.|+.=++.+|.
T Consensus 279 ~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 331 (361)
T 2vqa_A 279 VSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFNDGDYQS-IDLSTWLASNPS 331 (361)
T ss_dssp EEEECTTCEEEECTTCEEEEECCSSSCEEEEEEESSSSCCC-EEHHHHHHTSCH
T ss_pred EEEECCCCEEEECCCCeEEeEECCCCCEEEEEEECCCCcce-eeHHHHhhhCCH
Confidence 56667899999999999999998653334455556554322 123445666664
No 133
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=66.72 E-value=1.2 Score=40.88 Aligned_cols=28 Identities=29% Similarity=0.978 Sum_probs=0.0
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCC
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~ 46 (723)
..|+ ..|+..||.+|... ...||.||..
T Consensus 82 ~~C~-H~FH~~CI~~Wl~~------~~~CP~Cr~~ 109 (117)
T 4a0k_B 82 GVCN-HAFHFHCISRWLKT------RQVCPLDNRE 109 (117)
T ss_dssp -----------------------------------
T ss_pred CCcC-ceEcHHHHHHHHHc------CCcCCCCCCe
Confidence 4677 78999999999764 4689999863
No 134
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=66.07 E-value=2 Score=44.20 Aligned_cols=31 Identities=26% Similarity=0.405 Sum_probs=25.7
Q ss_pred hCccceEEEeecCceeEecCCCccccccccc
Q 004933 630 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 660 (723)
Q Consensus 630 yGVepWtf~Q~~GeAVFIPAGcPHQVrNL~S 660 (723)
+.|..=++.=..||+++||||.||+++|.-+
T Consensus 103 v~v~g~~~~L~~GD~i~ip~~~~H~~~N~g~ 133 (278)
T 1sq4_A 103 LTLQGQVHAMQPGGYAFIPPGADYKVRNTTG 133 (278)
T ss_dssp EEESSCEEEECTTEEEEECTTCCEEEECCSS
T ss_pred EEECCEEEEECCCCEEEECCCCcEEEEECCC
Confidence 3445567788899999999999999999843
No 135
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=65.36 E-value=0.92 Score=42.38 Aligned_cols=30 Identities=20% Similarity=0.589 Sum_probs=23.2
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCc
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~C 47 (723)
+.|+ ..||..||.+|...- ...||.||...
T Consensus 47 ~~Cg-H~FC~~Ci~~~~~~~-----~~~CP~Cr~~~ 76 (141)
T 3knv_A 47 AQCG-HRYCSFCLASILSSG-----PQNCAACVHEG 76 (141)
T ss_dssp CTTS-CEEEHHHHHHHGGGS-----CEECHHHHHTT
T ss_pred CCCC-CccCHHHHHHHHhcC-----CCCCCCCCCcc
Confidence 5888 789999999998521 24799988754
No 136
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=64.40 E-value=3.1 Score=45.12 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=25.3
Q ss_pred ccceEEEeecCceeEecCCCccccccccc
Q 004933 632 VEPWTFEQKLGEAVFIPAGCPHQVRNLKS 660 (723)
Q Consensus 632 VepWtf~Q~~GeAVFIPAGcPHQVrNL~S 660 (723)
|.+=++.=..||+|+||+|..|++.|--+
T Consensus 139 vdG~~~~~~~GD~v~iP~g~~H~~~N~gd 167 (368)
T 3nw4_A 139 VNGDPVRMSRGDLLLTPGWCFHGHMNDTD 167 (368)
T ss_dssp ETTEEEEEETTCEEEECTTCCEEEEECSS
T ss_pred ECCEEEEEeCCCEEEECCCCcEEeEeCCC
Confidence 56678889999999999999999999643
No 137
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=63.88 E-value=3.1 Score=45.46 Aligned_cols=28 Identities=21% Similarity=0.151 Sum_probs=25.5
Q ss_pred ccceEEEeecCceeEecCCCcccccccc
Q 004933 632 VEPWTFEQKLGEAVFIPAGCPHQVRNLK 659 (723)
Q Consensus 632 VepWtf~Q~~GeAVFIPAGcPHQVrNL~ 659 (723)
|.+-+|.-..||+||||+|.+||+.|.-
T Consensus 329 V~ge~~~~~~GD~~~iP~g~~H~~~N~g 356 (394)
T 3bu7_A 329 VGGKRFDWSEHDIFCVPAWTWHEHCNTQ 356 (394)
T ss_dssp ETTEEEEECTTCEEEECTTCCEEEEECC
T ss_pred ECCEEEEEeCCCEEEECCCCeEEeEeCC
Confidence 5678899999999999999999999974
No 138
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=62.89 E-value=2.5 Score=35.73 Aligned_cols=30 Identities=23% Similarity=0.609 Sum_probs=23.5
Q ss_pred CCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCcc
Q 004933 13 KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCN 48 (723)
Q Consensus 13 ~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~CN 48 (723)
.|+ ..||..||.++... -...||.||..-.
T Consensus 32 ~CG-H~fC~~Cl~~~~~~-----~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 32 TCG-YQICRFCWHRIRTD-----ENGLCPACRKPYP 61 (78)
T ss_dssp TTS-CCCCHHHHHHHTTS-----SCSBCTTTCCBCS
T ss_pred CCC-CCcCHHHHHHHHhc-----CCCCCCCCCCccC
Confidence 587 78999999998643 1368999998654
No 139
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=62.85 E-value=3.4 Score=39.58 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.1
Q ss_pred ceEEEeecCceeEecCCCccccccccc
Q 004933 634 PWTFEQKLGEAVFIPAGCPHQVRNLKS 660 (723)
Q Consensus 634 pWtf~Q~~GeAVFIPAGcPHQVrNL~S 660 (723)
.-++.=..||+++||+|.||..+|.-+
T Consensus 82 ~~~~~l~~GDv~~~P~g~~H~~~N~g~ 108 (178)
T 1dgw_A 82 RDTYKLDQGDAIKIQAGTPFYLINPDN 108 (178)
T ss_dssp EEEEEEETTEEEEECTTCCEEEEECCS
T ss_pred cEEEEECCCCEEEECCCCeEEEEeCCC
Confidence 446677889999999999999999854
No 140
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=62.66 E-value=2.6 Score=42.32 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=26.0
Q ss_pred HhCccceEEEeecCceeEecCCCccccccccc
Q 004933 629 EFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 660 (723)
Q Consensus 629 EyGVepWtf~Q~~GeAVFIPAGcPHQVrNL~S 660 (723)
+|-+..=++.=..||.+|++||+||+.+|.-.
T Consensus 198 ~~~~~~~~~~l~~GD~~~~~~~~pH~~~n~g~ 229 (246)
T 1sfn_A 198 LYKLEENYYPVTAGDIIWMGAHCPQWYGALGR 229 (246)
T ss_dssp EEEETTEEEEEETTCEEEECTTCCEEEEEESS
T ss_pred EEEECCEEEEcCCCCEEEECCCCCEEEEcCCC
Confidence 35566666777899999999999999999643
No 141
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A
Probab=62.05 E-value=5.5 Score=38.87 Aligned_cols=37 Identities=14% Similarity=0.104 Sum_probs=26.3
Q ss_pred EEEeecCceeEecCCCccccccccccceeeccccCcc
Q 004933 636 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 672 (723)
Q Consensus 636 tf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 672 (723)
++.=..||.|+||||.||...+-..--=+|+.|-+++
T Consensus 123 ~~~l~~GDli~IP~g~~H~~~~~~~~~~~~ir~F~~~ 159 (179)
T 1zrr_A 123 QVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDNP 159 (179)
T ss_dssp EEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECCG
T ss_pred EEEECCCCEEEECCCCeEeeecCCCceEEEEEeccCC
Confidence 4556899999999999999888665323344444443
No 142
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=59.90 E-value=3 Score=41.90 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=25.1
Q ss_pred CccceEEEeecCceeEecCCCcccccccccc
Q 004933 631 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKSC 661 (723)
Q Consensus 631 GVepWtf~Q~~GeAVFIPAGcPHQVrNL~SC 661 (723)
.|..=++.=..||+++||||.||+++|...+
T Consensus 82 ~~~~~~~~l~~Gd~~~~p~~~~H~~~n~~~~ 112 (246)
T 1sfn_A 82 AVGGETRTLREYDYVYLPAGEKHMLTAKTDA 112 (246)
T ss_dssp ECSSCEEEECTTEEEEECTTCCCEEEEEEEE
T ss_pred EECCEEEEECCCCEEEECCCCCEEEEeCCCE
Confidence 3445566778899999999999999998444
No 143
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=59.31 E-value=3.5 Score=34.66 Aligned_cols=26 Identities=35% Similarity=0.819 Sum_probs=21.1
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCc
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~C 47 (723)
..|+=..||..|+.+|. .||+||..-
T Consensus 34 ~pCgH~~~C~~C~~~~~----------~CP~Cr~~i 59 (79)
T 2yho_A 34 CPCGHTVCCESCAAQLQ----------SCPVCRSRV 59 (79)
T ss_dssp ETTCBCCBCHHHHTTCS----------BCTTTCCBC
T ss_pred ECCCCHHHHHHHHHhcC----------cCCCCCchh
Confidence 46885559999999983 999999864
No 144
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=59.03 E-value=3.1 Score=36.67 Aligned_cols=28 Identities=14% Similarity=0.097 Sum_probs=22.6
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCC
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~ 46 (723)
+.|+ ..||-.||.+|... ...||+|+..
T Consensus 45 ~~cG-htf~r~~I~~~l~~------~~~cP~~~~~ 72 (100)
T 2kre_A 45 LPSG-TIMDRSIILRHLLN------SPTDPFNRQT 72 (100)
T ss_dssp ETTT-EEEEHHHHHHHTTS------CSBCSSSCCB
T ss_pred CCCC-CEEchHHHHHHHHc------CCCCCCCCCC
Confidence 3577 67999999999974 2689999864
No 145
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=58.96 E-value=4.4 Score=39.37 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=26.6
Q ss_pred EEEeecCceeEecCCCccccccccccceeeccccCc
Q 004933 636 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 671 (723)
Q Consensus 636 tf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSP 671 (723)
++.=+.||++ ||+|.||+.+|.-+---..+-.++|
T Consensus 119 ~~~L~~GDsi-~~~g~~H~~~N~g~~~ar~l~V~~P 153 (172)
T 3es1_A 119 KRTVRQGGII-VQRGTNHLWRNTTDKPCRIAFILIE 153 (172)
T ss_dssp EEEECTTCEE-EECSCCBEEECCSSSCEEEEEEEEE
T ss_pred EEEECCCCEE-EeCCCcEEEEeCCCCCEEEEEEEcC
Confidence 4566899999 9999999999987654444445555
No 146
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=58.91 E-value=2.7 Score=44.03 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=22.3
Q ss_pred eEEEeecCceeEecCCCcccccccc
Q 004933 635 WTFEQKLGEAVFIPAGCPHQVRNLK 659 (723)
Q Consensus 635 Wtf~Q~~GeAVFIPAGcPHQVrNL~ 659 (723)
-++.=..||+++||+|.||..+|.-
T Consensus 96 ~~~~l~~GD~~~ip~g~~H~~~n~~ 120 (361)
T 2vqa_A 96 EIADVDKGGLWYFPRGWGHSIEGIG 120 (361)
T ss_dssp EEEEEETTEEEEECTTCEEEEEECS
T ss_pred EEEEEcCCCEEEECCCCeEEEEeCC
Confidence 4567778999999999999999986
No 147
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=58.85 E-value=5.3 Score=34.21 Aligned_cols=39 Identities=28% Similarity=0.869 Sum_probs=28.5
Q ss_pred ccccCCCCce-ecCCcccccc----cccccCCCCCcccchhchH
Q 004933 115 ETLCGNDERV-YCNHCATSII----DLHRSCPKCSYELCLTCCK 153 (723)
Q Consensus 115 ~a~~~~DER~-~CD~C~tSI~----D~HRsC~~CsydLCL~CC~ 153 (723)
++.+..+.++ +|-+|.+.|. .....|+.|++.+|..|-.
T Consensus 16 e~~v~~~~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~ 59 (86)
T 2ct7_A 16 EGVLMRDPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKR 59 (86)
T ss_dssp CSCCCSCCCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCS
T ss_pred HHHHhcCCCEeECcCCCchheecCCCCceEeCCCCCccccccCC
Confidence 3444445554 6999999764 3446899999999999964
No 148
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=58.34 E-value=4.2 Score=45.64 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=26.0
Q ss_pred eecCceeEecCCCccccccccccceeeccccCcc
Q 004933 639 QKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 672 (723)
Q Consensus 639 Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 672 (723)
=+.||+|+||||.||-..|.-+--=|++-++.+-
T Consensus 117 l~~GDvi~iPaG~~h~~~N~g~~~l~~v~~~d~~ 150 (493)
T 2d5f_A 117 FNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTS 150 (493)
T ss_dssp EETTEEEEECTTCCEEEEECSSSCEEEEEEECTT
T ss_pred ecCCCEEEECCCCcEEEEeCCCCCEEEEEEecCc
Confidence 3679999999999999999987545555444433
No 149
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=58.25 E-value=3.3 Score=41.93 Aligned_cols=46 Identities=22% Similarity=0.352 Sum_probs=31.2
Q ss_pred cCCcCCcceecCHHHHHHHHHHhCcc-ceEEEeecCceeEecCCCcccccccc
Q 004933 608 IHPIHDQCFYLSSEHKKKLKEEFGVE-PWTFEQKLGEAVFIPAGCPHQVRNLK 659 (723)
Q Consensus 608 ~dPIHDQ~fYL~~~hk~kLkeEyGVe-pWtf~Q~~GeAVFIPAGcPHQVrNL~ 659 (723)
.|| ++|.+|+=... -||.|+ .=++.=..||.||||+|.||-+|+..
T Consensus 149 sHp-~EEiy~VLsG~-----~e~~v~~g~~~~l~pGd~v~ipsgv~Ha~rt~d 195 (217)
T 4b29_A 149 EHL-PEELYSVVSGR-----ALFHLRNAPDLMLEPGQTRFHPANAPHAMTTLT 195 (217)
T ss_dssp ECS-SEEEEEEEEEC-----EEEEETTSCCEEECTTCEEEECTTCCEEEECCS
T ss_pred CCC-CceEEEEEeCC-----EEEEECCCCEEecCCCCEEEcCCCCceeEEECC
Confidence 666 56655542111 136555 55566789999999999999998743
No 150
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6
Probab=57.60 E-value=6.4 Score=38.97 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=28.4
Q ss_pred EEEeecCceeEecCCCccccccccccceeeccccCcc
Q 004933 636 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 672 (723)
Q Consensus 636 tf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 672 (723)
++.=..||.|+||||.||...+-.+--=+|+.|-+++
T Consensus 128 ~i~v~~GDlIiIPaG~~H~f~~~~~~~~~airlF~~~ 164 (191)
T 1vr3_A 128 RISMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFVGE 164 (191)
T ss_dssp EEEEETTEEEEECTTCCEEEEECTTCCEEEEEEESSS
T ss_pred EEEECCCCEEEECcCCcCCcccCCCCCEEEEEEECCC
Confidence 6777899999999999999887655434466666655
No 151
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.66 E-value=5.8 Score=33.52 Aligned_cols=34 Identities=18% Similarity=0.648 Sum_probs=26.5
Q ss_pred EecCCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCc
Q 004933 9 VPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (723)
Q Consensus 9 v~C~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~C 47 (723)
++|..|+ .+|=..||.+|+..-. ...||.||...
T Consensus 29 ~~C~~C~-h~fH~~Ci~kWl~~~~----~~~CP~Cr~~w 62 (74)
T 2ct0_A 29 QSCETCG-IRMHLPCVAKYFQSNA----EPRCPHCNDYW 62 (74)
T ss_dssp EECSSSC-CEECHHHHHHHSTTCS----SCCCTTTCSCC
T ss_pred CccCCCC-chhhHHHHHHHHHhcC----CCCCCCCcCcC
Confidence 5788998 6788999999996432 26899998654
No 152
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=55.61 E-value=4.3 Score=45.12 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=26.5
Q ss_pred eecCceeEecCCCccccccccccceeeccccCccc
Q 004933 639 QKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 673 (723)
Q Consensus 639 Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPEn 673 (723)
=+.||+++||||.||-..|.-+--=+++-++++-|
T Consensus 131 l~~GDv~~iPaG~~H~~~N~g~~~l~~l~~~d~~n 165 (459)
T 2e9q_A 131 FREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRN 165 (459)
T ss_dssp EETTEEEEECTTCCEEEEECSSSCEEEEEEEESSS
T ss_pred ecCCCEEEECCCCCEEEEeCCCCCEEEEEEecCCC
Confidence 35799999999999999999865555554444443
No 153
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=54.47 E-value=2.5 Score=38.10 Aligned_cols=34 Identities=26% Similarity=0.656 Sum_probs=24.7
Q ss_pred CCCceEecCCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCC
Q 004933 4 ERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (723)
Q Consensus 4 d~~~vv~C~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~ 46 (723)
.+||++.|.. .||.+|+..|...- .+.||.|+..
T Consensus 13 iygRmIPCkH----vFCydCa~~~~~~~-----~k~Cp~C~~~ 46 (101)
T 3vk6_A 13 VYGRMIPCKH----VFCYDCAILHEKKG-----DKMCPGCSDP 46 (101)
T ss_dssp EEEEEETTCC----EEEHHHHHHHHHTT-----CCBCTTTCCB
T ss_pred EEeeeccccc----cHHHHHHHHHHhcc-----CCCCcCcCCe
Confidence 3577888764 89999999985321 2579998763
No 154
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=54.39 E-value=2.3 Score=40.16 Aligned_cols=29 Identities=21% Similarity=0.509 Sum_probs=21.9
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCC
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~ 46 (723)
+.|+ ..||..||.+|...- ...||.||..
T Consensus 34 ~~Cg-H~fC~~Ci~~~~~~~-----~~~CP~Cr~~ 62 (170)
T 3hcs_A 34 TPCG-HRFCKACIIKSIRDA-----GHKCPVDNEI 62 (170)
T ss_dssp CTTS-CEEEHHHHHHHHHHH-----CSBCTTTCCB
T ss_pred CCCC-CHHHHHHHHHHHHhC-----CCCCCCCccC
Confidence 4788 789999999997421 1289999754
No 155
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.34 E-value=5.3 Score=32.75 Aligned_cols=25 Identities=32% Similarity=0.740 Sum_probs=19.5
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCC
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~ 46 (723)
..|+-..||..|+.+. ..||+||..
T Consensus 41 ~pCgH~~~C~~C~~~~----------~~CP~Cr~~ 65 (75)
T 2ecg_A 41 VPCGHLVTCKQCAEAV----------DKCPMCYTV 65 (75)
T ss_dssp SSSCCCCBCHHHHHHC----------SBCTTTCCB
T ss_pred ecCCCHHHHHHHhhCC----------CCCccCCce
Confidence 5788444999999753 689999975
No 156
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=54.27 E-value=4 Score=42.30 Aligned_cols=24 Identities=8% Similarity=0.295 Sum_probs=20.8
Q ss_pred EEEeecCceeEecCCCcccccccc
Q 004933 636 TFEQKLGEAVFIPAGCPHQVRNLK 659 (723)
Q Consensus 636 tf~Q~~GeAVFIPAGcPHQVrNL~ 659 (723)
++.=..||++++|||.+||++|-.
T Consensus 110 ~~~L~~Gds~y~p~~~~H~~~N~~ 133 (266)
T 4e2q_A 110 SKKLTVDSYAYLPPNFHHSLDCVE 133 (266)
T ss_dssp CEEECTTEEEEECTTCCCEEEESS
T ss_pred EEEEcCCCEEEECCCCCEEEEeCC
Confidence 456678999999999999999953
No 157
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=54.08 E-value=4.5 Score=41.15 Aligned_cols=31 Identities=13% Similarity=0.079 Sum_probs=25.2
Q ss_pred hCccceEEEeecCceeEecCCCccccccccc
Q 004933 630 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 660 (723)
Q Consensus 630 yGVepWtf~Q~~GeAVFIPAGcPHQVrNL~S 660 (723)
..|..=++.=..||++++|||.||+.+|.-+
T Consensus 97 ~~~~~~~~~L~~GD~~~~~~~~~H~~~N~~~ 127 (274)
T 1sef_A 97 VSDGQETHELEAGGYAYFTPEMKMYLANAQE 127 (274)
T ss_dssp EECSSCEEEEETTEEEEECTTSCCEEEESSS
T ss_pred EEECCEEEEECCCCEEEECCCCCEEEEeCCC
Confidence 3444556777899999999999999999854
No 158
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=53.41 E-value=5.9 Score=39.81 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=24.9
Q ss_pred CccceEEEeecCceeEecCCCccccccccc
Q 004933 631 GVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 660 (723)
Q Consensus 631 GVepWtf~Q~~GeAVFIPAGcPHQVrNL~S 660 (723)
.|..=++.=..||++++|||.||+.+|.-+
T Consensus 95 ~~~~~~~~L~~Gd~~~~~~~~~H~~~N~~~ 124 (261)
T 1rc6_A 95 KAEGKTFALSEGGYLYCPPGSLMTFVNAQA 124 (261)
T ss_dssp EETTEEEEEETTEEEEECTTCCCEEEECSS
T ss_pred EECCEEEEECCCCEEEECCCCCEEEEeCCC
Confidence 344556777899999999999999999854
No 159
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=52.49 E-value=4.3 Score=41.70 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=26.0
Q ss_pred HhCccceEEEeecCceeEecCCCccccccccc
Q 004933 629 EFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKS 660 (723)
Q Consensus 629 EyGVepWtf~Q~~GeAVFIPAGcPHQVrNL~S 660 (723)
+|-+..=++.=..||.+|+|+||||+.+|.-.
T Consensus 224 ~~~~~~~~~~v~~GD~~~~~~~~~h~~~n~g~ 255 (278)
T 1sq4_A 224 VYRLNQDWVEVEAGDFMWLRAFCPQACYSGGP 255 (278)
T ss_dssp EEEETTEEEEEETTCEEEEEESCCEEEECCSS
T ss_pred EEEECCEEEEeCCCCEEEECCCCCEEEEcCCC
Confidence 35556666777899999999999999999654
No 160
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=52.17 E-value=2.7 Score=35.68 Aligned_cols=28 Identities=18% Similarity=0.069 Sum_probs=22.3
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCC
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~ 46 (723)
+.|+ ..||-.||.+|... ...||+|+..
T Consensus 30 ~~cG-htf~r~~I~~~l~~------~~~cP~~~~~ 57 (85)
T 2kr4_A 30 LPSG-TVMDRSIILRHLLN------SPTDPFNRQM 57 (85)
T ss_dssp CTTS-CEEEHHHHHHHHHH------CSBCTTTCCB
T ss_pred CCCC-CEECHHHHHHHHhc------CCCCCCCcCC
Confidence 4587 77999999999853 3689999854
No 161
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=51.12 E-value=7.1 Score=41.59 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=24.4
Q ss_pred ccceEEEeecCceeEecCCCccccccc
Q 004933 632 VEPWTFEQKLGEAVFIPAGCPHQVRNL 658 (723)
Q Consensus 632 VepWtf~Q~~GeAVFIPAGcPHQVrNL 658 (723)
|.+-+|.=..||+++||+|++||++|-
T Consensus 303 v~~~~~~~~~GD~~~vP~~~~H~~~n~ 329 (354)
T 2d40_A 303 IGNETFSFSAKDIFVVPTWHGVSFQTT 329 (354)
T ss_dssp ETTEEEEEETTCEEEECTTCCEEEEEE
T ss_pred ECCEEEEEcCCCEEEECCCCeEEEEeC
Confidence 467888999999999999999999994
No 162
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=51.02 E-value=6.1 Score=44.59 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=26.7
Q ss_pred ecCceeEecCCCccccccccccceeeccccCccc
Q 004933 640 KLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 673 (723)
Q Consensus 640 ~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPEn 673 (723)
..||+|+||||.||-..|.-+--=||+-++.+-|
T Consensus 131 ~~GDvi~iPaG~~hw~~N~g~~~l~~v~~~d~~n 164 (510)
T 3c3v_A 131 NEGDLIAVPTGVAFWLYNDHDTDVVAVSLTDTNN 164 (510)
T ss_dssp CTTEEEEECTTCEEEEEECSSSCEEEEEEECTTB
T ss_pred cCCCEEEECCCCCEEEEeCCCCCEEEEEEeCCCC
Confidence 5699999999999999999875555655555554
No 163
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=48.84 E-value=7.8 Score=42.31 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=24.5
Q ss_pred CccceEEEeecCceeEecCCCcccccc
Q 004933 631 GVEPWTFEQKLGEAVFIPAGCPHQVRN 657 (723)
Q Consensus 631 GVepWtf~Q~~GeAVFIPAGcPHQVrN 657 (723)
-|.+=++.-..||+|+||+|..|+.+|
T Consensus 158 ~v~G~~~~~~~GD~i~~P~g~~H~~~N 184 (394)
T 3bu7_A 158 IVDGHKVELGANDFVLTPNGTWHEHGI 184 (394)
T ss_dssp EETTEEEEECTTCEEEECTTCCEEEEE
T ss_pred EECCEEEEEcCCCEEEECcCCCEEEEc
Confidence 456668999999999999999999999
No 164
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=48.53 E-value=7 Score=43.62 Aligned_cols=30 Identities=23% Similarity=0.405 Sum_probs=23.4
Q ss_pred EEeecCceeEecCCCccccccccccceeec
Q 004933 637 FEQKLGEAVFIPAGCPHQVRNLKSCTKVAV 666 (723)
Q Consensus 637 f~Q~~GeAVFIPAGcPHQVrNL~SCIKVAl 666 (723)
..=+.||+|+||||.||-..|.-+--=+++
T Consensus 115 ~~l~~GDvi~iPaG~~h~~~N~G~~~l~~i 144 (476)
T 1fxz_A 115 YNFREGDLIAVPTGVAWWMYNNEDTPVVAV 144 (476)
T ss_dssp EEECTTEEEEECTTCEEEEEECSSSCEEEE
T ss_pred EEEeCCCEEEECCCCcEEEEeCCCCCEEEE
Confidence 344679999999999999999975444443
No 165
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=47.90 E-value=11 Score=33.76 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=24.1
Q ss_pred hCccceEEEeecCceeEecCCCcccccccc
Q 004933 630 FGVEPWTFEQKLGEAVFIPAGCPHQVRNLK 659 (723)
Q Consensus 630 yGVepWtf~Q~~GeAVFIPAGcPHQVrNL~ 659 (723)
+-|..=++.=..||++|||+|.+|..++-.
T Consensus 51 ~~i~~~~~~l~~Gd~~~i~p~~~H~~~~~~ 80 (164)
T 2arc_A 51 VKNQGREFVCRPGDILLFPPGEIHHYGRHP 80 (164)
T ss_dssp EEETTEEEEECTTCEEEECTTCCEEEEECT
T ss_pred EEECCEEEEecCCeEEEEcCCCCEEEEeCC
Confidence 345555677789999999999999988764
No 166
>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}
Probab=47.46 E-value=8.7 Score=36.89 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=28.8
Q ss_pred ecCceeEecCCCcccccccc----ccceee-----ccccCcc
Q 004933 640 KLGEAVFIPAGCPHQVRNLK----SCTKVA-----VDFVSPE 672 (723)
Q Consensus 640 ~~GeAVFIPAGcPHQVrNL~----SCIKVA-----lDFVSPE 672 (723)
..||.+++|+|.+|++.+.. -||-++ +-|+.|.
T Consensus 85 ~aGd~~~~P~g~~H~~~a~~~~~~gci~l~v~~GpL~~~~~~ 126 (165)
T 3cjx_A 85 TAGCYLYEPGGSIHQFNTPRDNEGQTEVIFMLSGCNVNFTQD 126 (165)
T ss_dssp ETTEEEEECTTCEECEECCTTCSSCEEEEEEEESCEEEECTT
T ss_pred CCCeEEEeCCCCceeeEeCCCCCCCcEEEEEEeccceecCCC
Confidence 68999999999999999998 898777 6777775
No 167
>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}
Probab=45.80 E-value=8.5 Score=37.66 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=31.0
Q ss_pred EEEeecCceeEecCCCccccccccccceeeccccCccchHH
Q 004933 636 TFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDE 676 (723)
Q Consensus 636 tf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPEnV~e 676 (723)
.++..+||.|.||.|.+|...|.... |.++=||+-|-++
T Consensus 120 ~i~L~pGesvtIppg~~H~f~ageeg--vli~EvSt~~dDe 158 (175)
T 2y0o_A 120 EIELEPGGQYTIPPNTKHWFQAGEEG--AVVTEMSSTSTDK 158 (175)
T ss_dssp EEEECTTCEEEECTTCCEEEEEEEEE--EEEEEEEECCCGG
T ss_pred EEEECCCCEEEECCCCcEEEEeCCCC--EEEEEEeCCCCCC
Confidence 35899999999999999999996554 6667777766554
No 168
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=45.15 E-value=8.9 Score=30.63 Aligned_cols=27 Identities=37% Similarity=0.994 Sum_probs=21.7
Q ss_pred CceEecCCCCC-----cccchhhh---hhhCCCCC
Q 004933 6 KYVVPCGKCRT-----KVYCIQCI---KQWYPKMS 32 (723)
Q Consensus 6 ~~vv~C~~C~~-----k~fC~~CI---~~wYp~ls 32 (723)
...-.|++|++ .|||..|- +.|||+-+
T Consensus 9 eD~WkC~~C~k~N~Pl~ryC~rCwaLRk~Wlpd~~ 43 (53)
T 2cr8_A 9 EDEWQCTECKKFNSPSKRYCFRCWALRKDWYSDCS 43 (53)
T ss_dssp SCCEECSSSCCEECSSCCBCTTTCCBCCCCCCCCC
T ss_pred cceeecccccccCCCccchhHHHHHhhcccCCCcc
Confidence 44668999996 69999996 58999854
No 169
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=44.82 E-value=7.3 Score=35.05 Aligned_cols=12 Identities=25% Similarity=1.087 Sum_probs=11.3
Q ss_pred ccchhhhhhhCC
Q 004933 18 VYCIQCIKQWYP 29 (723)
Q Consensus 18 ~fC~~CI~~wYp 29 (723)
.||-.|+++||.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 699999999997
No 170
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=43.95 E-value=5.6 Score=31.90 Aligned_cols=29 Identities=31% Similarity=0.768 Sum_probs=22.1
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCC
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~ 46 (723)
.-|+-..||..|+.+|... ...||+||..
T Consensus 26 ~pCgH~~~C~~C~~~~~~~------~~~CPiCR~~ 54 (64)
T 2vje_A 26 GKTGHLMACFTCAKKLKKR------NKPCPVCRQP 54 (64)
T ss_dssp TTEEEEEECHHHHHHHHHT------TCCCTTTCCC
T ss_pred CCCCChhhHHHHHHHHHHc------CCcCCCcCcc
Confidence 3677555999999999732 3579999974
No 171
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=43.40 E-value=6.5 Score=36.42 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=36.6
Q ss_pred cCCcCCcceecCHHHHHHHHHHhCccceEEEeecCceeEecCCC
Q 004933 608 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGC 651 (723)
Q Consensus 608 ~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GeAVFIPAGc 651 (723)
.=|.|...-.+.+.+-+.|+++|||..|.| +-||-|.|=||=
T Consensus 14 ~Ap~h~rrk~msa~LskeLr~ky~vr~~~I--kkGD~V~Vi~G~ 55 (120)
T 1vq8_T 14 RAPLHERHKQVRATLSADLREEYGQRNVRV--NAGDTVEVLRGD 55 (120)
T ss_dssp TCCGGGSGGGGEEEECHHHHHHHTCSEEEC--CTTCEEEECSST
T ss_pred cCCcchhhheeeCcCCHHHHHhhccccccc--cCCCEEEEEecC
Confidence 358899999999988889999999999876 679999999983
No 172
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=42.94 E-value=7.2 Score=38.75 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=22.3
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCc
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNC 47 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~C 47 (723)
+.|+ ..||-.||.+|...- ...||+||...
T Consensus 224 ~~~g-h~f~~~~i~~~~~~~-----~~~cP~~~~~~ 253 (281)
T 2c2l_A 224 TPSG-ITYDRKDIEEHLQRV-----GHFNPVTRSPL 253 (281)
T ss_dssp CSSC-CEEETTHHHHHHHHT-----CSSCTTTCCCC
T ss_pred CCCC-CEECHHHHHHHHHHC-----CCCCcCCCCCC
Confidence 5687 789999999998421 12399998654
No 173
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=41.86 E-value=23 Score=31.81 Aligned_cols=46 Identities=22% Similarity=0.508 Sum_probs=25.9
Q ss_pred CCCCceEecCCCCCcccchhhhhhhCCCCCHHHHHh---hCCCCCCCcccccccC
Q 004933 3 SERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAE---ICPFCRRNCNCSVCLH 54 (723)
Q Consensus 3 ~d~~~vv~C~~C~~k~fC~~CI~~wYp~ls~~di~~---~CP~Crg~CNCk~CLr 54 (723)
.+.+.+|.|..|.+. |=..|+.-+. .| .+.|.. .||.|. .|.+|-+
T Consensus 18 g~~~~Li~C~~C~~~-~H~~Cl~~~~-~~-~~~~~~~~W~C~~C~---~C~~C~~ 66 (114)
T 2kwj_A 18 GRPEELVSCADCGRS-GHPTCLQFTL-NM-TEAVKTYKWQCIECK---SCILCGT 66 (114)
T ss_dssp CCCCCCEECSSSCCE-ECTTTTTCCH-HH-HHHHHHTTCCCGGGC---CCTTTTC
T ss_pred CCCCCCeEeCCCCCc-cchhhCCChh-hh-hhccCCCccCccccC---ccCcccc
Confidence 345689999999965 5555554211 11 123333 577664 4666644
No 174
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=41.45 E-value=9.3 Score=41.74 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=32.8
Q ss_pred cCCcCCcceecCHHHHHHHHHHhCc----cceEEEeecCceeEecCCCccccccc
Q 004933 608 IHPIHDQCFYLSSEHKKKLKEEFGV----EPWTFEQKLGEAVFIPAGCPHQVRNL 658 (723)
Q Consensus 608 ~dPIHDQ~fYL~~~hk~kLkeEyGV----epWtf~Q~~GeAVFIPAGcPHQVrNL 658 (723)
+||=.++.+|+-.-.- .+|| ...++.=..||+++||+|.+|-+.|.
T Consensus 65 Hh~~a~E~~yVl~G~g-----~v~~v~~~~~~~~~l~~GDv~~iP~G~~H~~~N~ 114 (416)
T 1uij_A 65 HHADADFLLFVLSGRA-----ILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNP 114 (416)
T ss_dssp EEESEEEEEEEEESCE-----EEEEECSSCEEEEEECTTEEEEECTTCEEEEEEC
T ss_pred ccCCCceEEEEEeeEE-----EEEEEECCCCeEEEecCCCEEEECCCCeEEEEec
Confidence 3555566666644321 1343 45667778999999999999999999
No 175
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=41.22 E-value=9.6 Score=29.81 Aligned_cols=24 Identities=25% Similarity=0.776 Sum_probs=19.6
Q ss_pred eEecCCCCC-----cccchhhh---hhhCCCC
Q 004933 8 VVPCGKCRT-----KVYCIQCI---KQWYPKM 31 (723)
Q Consensus 8 vv~C~~C~~-----k~fC~~CI---~~wYp~l 31 (723)
.-.|++|++ .|||..|- +.|||+-
T Consensus 13 ~WkC~~C~~~N~Pl~r~C~rCw~LRk~Wlp~~ 44 (46)
T 2c6a_A 13 YWKCTSCNEMNPPLPSHCNRCWALRENWLPED 44 (46)
T ss_dssp CEECTTTCCEECSSCSSCTTTCCCCSSCSCCC
T ss_pred eEecccccccCCCccchhhHHHhhccccCCcc
Confidence 457999996 49999996 5899974
No 176
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=40.98 E-value=12 Score=41.84 Aligned_cols=67 Identities=9% Similarity=0.015 Sum_probs=39.9
Q ss_pred CcccCCcCCcceecCHHHHH-HHHHHhCccceEEEeecCceeEecCCCccccccccccceeeccccCc
Q 004933 605 EQVIHPIHDQCFYLSSEHKK-KLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSP 671 (723)
Q Consensus 605 ~~v~dPIHDQ~fYL~~~hk~-kLkeEyGVepWtf~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSP 671 (723)
....||-.++.+|+..-.-+ .+-.+-|-+-.+..=..||.++||+|.||.+.|...-+.+..=|+||
T Consensus 352 ~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~viP~G~~H~~~ng~~~l~~l~f~~s~ 419 (476)
T 1fxz_A 352 VPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTND 419 (476)
T ss_dssp EEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECSTTEEEEEEESSS
T ss_pred cceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEEEECCCCeEEEEeCCCCEEEEEEECCC
Confidence 44578877777776543211 11111222223333578999999999999999965444444444455
No 177
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=40.98 E-value=32 Score=32.57 Aligned_cols=37 Identities=22% Similarity=0.723 Sum_probs=27.4
Q ss_pred CCCceEecCCCCCcccchhhhhhhCCCCCHHHHHh--------hCCCCC
Q 004933 4 ERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVAE--------ICPFCR 44 (723)
Q Consensus 4 d~~~vv~C~~C~~k~fC~~CI~~wYp~ls~~di~~--------~CP~Cr 44 (723)
+.|.++.|.+|- +.||..||. |.+.++.+++ .||+|+
T Consensus 71 ~GG~LlcCD~Cp-r~Fh~~Cl~---p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 71 EGGNLICCDFCH-NAFCKKCIL---RNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp CCSSEEECSSSC-CEEEHHHHH---HHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCcEEeCCCCC-CeeeHhhcC---CCCChhhhhhcccCCCCCEeeccc
Confidence 567899999999 789999996 4455544433 388884
No 178
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.32 E-value=7.9 Score=35.87 Aligned_cols=40 Identities=25% Similarity=0.462 Sum_probs=35.5
Q ss_pred CCcCCcceecCHHHHHHHHHHhCccceEEEeecCceeEecCC
Q 004933 609 HPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAG 650 (723)
Q Consensus 609 dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GeAVFIPAG 650 (723)
=|.|...-++.+.+=+.|+++|||.-|.| +-||-|.|=+|
T Consensus 18 Ap~h~r~k~msa~LSkeLR~ky~~r~~~I--kkGD~V~Vi~G 57 (121)
T 3j21_U 18 APLHVRQKLMSAPLSRELREKYKVRNLPV--RVGDKVRIMRG 57 (121)
T ss_dssp CCTTGGGGGSEEEBCHHHHHHTCCSEEEC--CSSSEEEECSS
T ss_pred CCcchhhhhhcCcCCHHHHHHhCCccccc--ccCCEEEEeec
Confidence 47888888888888889999999999988 57999999998
No 179
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.15 E-value=18 Score=30.54 Aligned_cols=27 Identities=19% Similarity=0.597 Sum_probs=20.1
Q ss_pred CcccchhhhhhhCCCCCHHHHHhhCCCCCCC
Q 004933 16 TKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (723)
Q Consensus 16 ~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~ 46 (723)
-+.|...||.+|.-.- =...||+||..
T Consensus 41 ~h~fH~~Cl~~Wl~~~----~~~~CplCr~~ 67 (80)
T 2d8s_A 41 LHFVHQACLQQWIKSS----DTRCCELCKYE 67 (80)
T ss_dssp SCCEETTHHHHHHHHH----CCSBCSSSCCB
T ss_pred CCeeCHHHHHHHHhhC----CCCCCCCCCCe
Confidence 4889999999997421 02379999875
No 180
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=37.53 E-value=12 Score=32.57 Aligned_cols=31 Identities=19% Similarity=0.564 Sum_probs=28.5
Q ss_pred ceecCCcccccccccccCCCCCcccchhchH
Q 004933 123 RVYCNHCATSIIDLHRSCPKCSYELCLTCCK 153 (723)
Q Consensus 123 R~~CD~C~tSI~D~HRsC~~CsydLCL~CC~ 153 (723)
...||.|...+..+.-.|..|.|+|=+.|-.
T Consensus 47 ~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~ 77 (89)
T 1v5n_A 47 VYTCDKCEEEGTIWSYHCDECDFDLHAKCAL 77 (89)
T ss_dssp SCCCTTTSCCCCSCEEECTTTCCCCCHHHHH
T ss_pred CeEeCCCCCcCCCcEEEcCCCCCeEcHHhcC
Confidence 4679999999999999999999999999975
No 181
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=36.00 E-value=16 Score=40.28 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=24.1
Q ss_pred ceEEEeecCceeEecCCCcccccccc-cc
Q 004933 634 PWTFEQKLGEAVFIPAGCPHQVRNLK-SC 661 (723)
Q Consensus 634 pWtf~Q~~GeAVFIPAGcPHQVrNL~-SC 661 (723)
..++.=..||+++||+|.+|-+.|.- ++
T Consensus 102 ~~~~~l~~GDv~~iP~G~~H~~~N~g~~e 130 (434)
T 2ea7_A 102 RDSYILEQGHAQKIPAGTTFFLVNPDDNE 130 (434)
T ss_dssp EEEEEEETTEEEEECTTCEEEEEECCSSC
T ss_pred CEEEEeCCCCEEEECCCccEEEEeCCCCC
Confidence 45777788999999999999999995 53
No 182
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=35.63 E-value=16 Score=41.27 Aligned_cols=102 Identities=9% Similarity=-0.010 Sum_probs=56.2
Q ss_pred CCCccEeEeecCCChHHHHHHHHHHHHhhccccCCCCCcccCCcCCcceecCHHHHH-HHHHHhCccceEEEeecCceeE
Q 004933 568 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKK-KLKEEFGVEPWTFEQKLGEAVF 646 (723)
Q Consensus 568 ~~~GAlWdIFrreDv~KLreyL~kh~~Ef~h~~~~p~~~v~dPIHDQ~fYL~~~hk~-kLkeEyGVepWtf~Q~~GeAVF 646 (723)
..+|.+.-+... +.|-|.. |.--...+...-+.-+....||-.++.+|+..-.-+ .+-.+-|-+-.+..=..||.++
T Consensus 351 ~~gG~v~~~~~~-~fP~L~~-l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~v 428 (510)
T 3c3v_A 351 PQAGSLKTANEL-NLLILRW-LGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVLV 428 (510)
T ss_dssp TTTEEEEEECTT-TSTTHHH-HTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred CCCeEEEEeccc-cCccccc-ceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEEE
Confidence 467777777764 5777732 110001111122223345678988888777544211 1111122222333357899999
Q ss_pred ecCCCccccccccccceeeccccCc
Q 004933 647 IPAGCPHQVRNLKSCTKVAVDFVSP 671 (723)
Q Consensus 647 IPAGcPHQVrNL~SCIKVAlDFVSP 671 (723)
||+|.||-+.|...-..+..=|+|+
T Consensus 429 iP~G~~H~~~Ng~e~l~~l~f~~s~ 453 (510)
T 3c3v_A 429 VPQNFAVAGKSQSDNFEYVAFKTDS 453 (510)
T ss_dssp ECTTCEEEEEECSSEEEEEEEESSS
T ss_pred ECCCCeEEEEeCCCCEEEEEEECCC
Confidence 9999999999964444444433344
No 183
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=33.33 E-value=16 Score=33.80 Aligned_cols=55 Identities=11% Similarity=-0.013 Sum_probs=34.3
Q ss_pred CcccCCcCCcceecCHHHHHHHHHHhCccc--eEEEeecCceeEecCCCccc-cccccccceee
Q 004933 605 EQVIHPIHDQCFYLSSEHKKKLKEEFGVEP--WTFEQKLGEAVFIPAGCPHQ-VRNLKSCTKVA 665 (723)
Q Consensus 605 ~~v~dPIHDQ~fYL~~~hk~kLkeEyGVep--Wtf~Q~~GeAVFIPAGcPHQ-VrNL~SCIKVA 665 (723)
....|| +.+.+|+=.--- ..+-|-.+ |++ ..||.+++|+|.+|+ +.+...|+=+.
T Consensus 58 p~H~H~-~~ee~~VL~G~~---~~~~g~~~~~~~~--~~Gd~~~~p~g~~H~p~~~~e~~~~l~ 115 (145)
T 2o1q_A 58 AAHVHV-GPGEYFLTKGKM---DVRGGKAAGGDTA--IAPGYGYESANARHDKTEFPVASEFYM 115 (145)
T ss_dssp CCEEES-SCEEEEEEEEEE---EETTCGGGTSEEE--ESSEEEEECTTCEESCCEEEEEEEEEE
T ss_pred CccCCC-CCEEEEEEEeEE---EEcCCCEecceEe--CCCEEEEECcCCccCCeECCCCeEEEE
Confidence 345666 555555432211 12223333 444 689999999999999 88888886443
No 184
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=33.19 E-value=21 Score=39.49 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=23.5
Q ss_pred eEEEeecCceeEecCCCcccccccc-cc
Q 004933 635 WTFEQKLGEAVFIPAGCPHQVRNLK-SC 661 (723)
Q Consensus 635 Wtf~Q~~GeAVFIPAGcPHQVrNL~-SC 661 (723)
.++.=+.||.++||+|.+|.+.|.- +.
T Consensus 128 ~~~~l~~GDv~~~P~G~~H~~~N~g~~~ 155 (445)
T 2cav_A 128 DTYKLDQGDAIKIQAGTPFYLINPDNNQ 155 (445)
T ss_dssp EEEEEETTEEEEECTTCCEEEEECCSSC
T ss_pred EEEEecCCCEEEECCCCcEEEEECCCCC
Confidence 4677788999999999999999996 44
No 185
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=33.05 E-value=11 Score=34.03 Aligned_cols=12 Identities=33% Similarity=1.326 Sum_probs=11.1
Q ss_pred ccchhhhhhhCC
Q 004933 18 VYCIQCIKQWYP 29 (723)
Q Consensus 18 ~fC~~CI~~wYp 29 (723)
.||-.|+.+||.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 699999999997
No 186
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=32.78 E-value=21 Score=37.57 Aligned_cols=48 Identities=17% Similarity=0.329 Sum_probs=32.8
Q ss_pred ccCCcCCcceecCHHHHHHHHHHhCc---cce--EEEeecCceeEecCCCccccccccc
Q 004933 607 VIHPIHDQCFYLSSEHKKKLKEEFGV---EPW--TFEQKLGEAVFIPAGCPHQVRNLKS 660 (723)
Q Consensus 607 v~dPIHDQ~fYL~~~hk~kLkeEyGV---epW--tf~Q~~GeAVFIPAGcPHQVrNL~S 660 (723)
..|| ..+-+|+..-.- ++.| .+= ++.=..||.++||+|.+|.++|...
T Consensus 95 H~H~-~~E~~~Vl~G~~-----~~~~~~~~g~~~~~~l~~GD~~~ip~g~~H~~~n~~~ 147 (385)
T 1j58_A 95 HWHK-EAEWAYMIYGSA-----RVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALEE 147 (385)
T ss_dssp EEES-SCEEEEEEEEEE-----EEEEECTTSCEEEEEEETTEEEEECTTCCEEEEEEEE
T ss_pred ccCC-hheEEEEEeeeE-----EEEEEeCCCcEEEEEeCCCCEEEECCCCeEEEEECCC
Confidence 4566 566666543321 2333 222 5577899999999999999999865
No 187
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=32.62 E-value=34 Score=33.08 Aligned_cols=46 Identities=24% Similarity=0.670 Sum_probs=37.6
Q ss_pred CCCceEecC--CCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCcccccccCc
Q 004933 4 ERKYVVPCG--KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHT 55 (723)
Q Consensus 4 d~~~vv~C~--~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~CNCk~CLr~ 55 (723)
+.|.|+-|. +|- +.||..||+...-.-+.++|.+.=|. +|=.|...
T Consensus 87 ~Gg~l~~Cdn~~C~-r~FC~~CI~~nvG~~~~~~i~~~d~W-----~Cy~C~P~ 134 (159)
T 3a1b_A 87 GGREVLMCGNNNCC-RCFCVECVDLLVGPGAAQAAIKEDPW-----NCYMCGHK 134 (159)
T ss_dssp CCSEEEECSSTTTC-CEEEHHHHHHHTCTTHHHHHHTSSSC-----CCTTTCSS
T ss_pred CCCeEEeeCCCCCC-CchhHHHHHHhcCHhHHHHHhccCCC-----EEEecCCc
Confidence 356799999 899 78999999999999889999988666 55556544
No 188
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=31.49 E-value=12 Score=41.99 Aligned_cols=119 Identities=11% Similarity=0.120 Sum_probs=62.9
Q ss_pred CCCccEeEeecCCChHHHHHHHHHHHHhhccccCCCCCcccCCcCCcceecCHHHHH-HHHHHhCccceEEEeecCceeE
Q 004933 568 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYLSSEHKK-KLKEEFGVEPWTFEQKLGEAVF 646 (723)
Q Consensus 568 ~~~GAlWdIFrreDv~KLreyL~kh~~Ef~h~~~~p~~~v~dPIHDQ~fYL~~~hk~-kLkeEyGVepWtf~Q~~GeAVF 646 (723)
..+|.+.-+... +.|-|.. |.--...+...-+.-.....||=.++.+|+..-.-+ .+-.+.|-+-.+..=..||.++
T Consensus 346 ~~gG~v~~~~~~-~~P~L~~-lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~v 423 (493)
T 2d5f_A 346 PKAGRISTLNSL-TLPALRQ-FGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLLV 423 (493)
T ss_dssp TTTEEEEEESTT-TSTTHHH-HTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred CCCeEEEEeccc-cCccccc-cceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEEE
Confidence 456777777654 6777632 110111121112222345678877887776543211 1111222222233457899999
Q ss_pred ecCCCccccccccccceeeccccCccchHHHHHHHHHhhcCCcc
Q 004933 647 IPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKN 690 (723)
Q Consensus 647 IPAGcPHQVrNL~SCIKVAlDFVSPEnV~ec~rLteEfR~Lp~~ 690 (723)
||+|.||...|...-..+..=|.|+..-..- |+.=|+.+|.+
T Consensus 424 vP~G~~H~~~n~~e~~~~l~~~ts~~p~~~~--l~s~~~~~p~e 465 (493)
T 2d5f_A 424 VPQNFVVAEQGGEQGLEYVVFKTHHNAVSSY--IKDVFRAIPSE 465 (493)
T ss_dssp ECTTCEEEEEEEEEEEEEEEEESSTTCCEEE--HHHHHHHSCHH
T ss_pred ECCCCeEeeeeCCCCEEEEEEECCCCCccee--HHHHHHhCCHH
Confidence 9999999999976444443333332221111 26667778753
No 189
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=30.85 E-value=27 Score=29.58 Aligned_cols=35 Identities=26% Similarity=0.761 Sum_probs=27.7
Q ss_pred CCCCceecCCccccccccc---ccCCCCCcccchhchHH
Q 004933 119 GNDERVYCNHCATSIIDLH---RSCPKCSYELCLTCCKE 154 (723)
Q Consensus 119 ~~DER~~CD~C~tSI~D~H---RsC~~CsydLCL~CC~E 154 (723)
+.++...|..|..+ |.+. -+|..|+.-+|-.|...
T Consensus 15 ~d~~~~~C~~C~~~-Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 15 KDDEATHCRQCEKE-FSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCCBCTTTCCB-CBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCccCCcccCcCCc-ccCccccccCCCCCCEEChHHhCC
Confidence 45667789999876 4444 59999999999999863
No 190
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*
Probab=30.39 E-value=41 Score=38.15 Aligned_cols=36 Identities=19% Similarity=0.516 Sum_probs=29.3
Q ss_pred CCCceecCCcccccccccccCCC--C---CcccchhchHHH
Q 004933 120 NDERVYCNHCATSIIDLHRSCPK--C---SYELCLTCCKEI 155 (723)
Q Consensus 120 ~DER~~CD~C~tSI~D~HRsC~~--C---sydLCL~CC~El 155 (723)
.+...+|..|++-+|++...|+. | ..++|+.|...-
T Consensus 455 ~~~~~~C~~C~~~lFn~~~v~~~~~~~~~~~v~C~~Ca~~~ 495 (531)
T 3avr_A 455 EEPAHYCSICEVEVFDLLFVTNESNSRKTYIVHCQDCARKT 495 (531)
T ss_dssp TCCCEECTTTCCEECSEEEEEECTTCSSEEEEECHHHHHHH
T ss_pred CCCCeeccccchhheeeEEEEecCCCCCCCCcCChhhhhhc
Confidence 45678999999999999988852 4 247999999974
No 191
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=30.26 E-value=20 Score=30.51 Aligned_cols=30 Identities=27% Similarity=0.772 Sum_probs=23.0
Q ss_pred eEecCCCCCcccchhhhhhh---CCCCCHHHHHh
Q 004933 8 VVPCGKCRTKVYCIQCIKQW---YPKMSELDVAE 38 (723)
Q Consensus 8 vv~C~~C~~k~fC~~CI~~w---Yp~ls~~di~~ 38 (723)
.|.|.+|+ ..||..|-..| =+.+|=+++++
T Consensus 43 ~v~C~~C~-~~FC~~C~~~w~~~H~~~sC~~~~~ 75 (86)
T 2ct7_A 43 EATCPQCH-QTFCVRCKRQWEEQHRGRSCEDFQN 75 (86)
T ss_dssp CEECTTTC-CEECSSSCSBCCTTTTTSCHHHHHH
T ss_pred ceEeCCCC-CccccccCCchhhcCCCCChHHHHH
Confidence 47888887 77899999888 77777666543
No 192
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=29.79 E-value=13 Score=29.68 Aligned_cols=29 Identities=24% Similarity=0.785 Sum_probs=21.4
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCC
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~ 46 (723)
..|+-..||..|+.+|.-. ...||+||..
T Consensus 25 ~pCgH~~~C~~C~~~~~~~------~~~CPiCR~~ 53 (63)
T 2vje_B 25 GRTGHLVTCFHCARRLKKA------GASCPICKKE 53 (63)
T ss_dssp TTEEEEEECHHHHHHHHHT------TCBCTTTCCB
T ss_pred cCCCCHhHHHHHHHHHHHh------CCcCCCcCch
Confidence 4566445999999998632 2689999974
No 193
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=29.20 E-value=35 Score=28.75 Aligned_cols=34 Identities=21% Similarity=0.744 Sum_probs=27.6
Q ss_pred CCCceecCC--cccccc----cccccCC-----CCCcccchhchH
Q 004933 120 NDERVYCNH--CATSII----DLHRSCP-----KCSYELCLTCCK 153 (723)
Q Consensus 120 ~DER~~CD~--C~tSI~----D~HRsC~-----~CsydLCL~CC~ 153 (723)
.+..++|-. |.+.|. +....|+ +|+|.+|..|-.
T Consensus 22 ~~~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~ 66 (80)
T 2jmo_A 22 QMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKE 66 (80)
T ss_dssp CCSSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTE
T ss_pred hCCcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCc
Confidence 345899988 999885 3557898 999999999965
No 194
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=28.50 E-value=22 Score=37.05 Aligned_cols=34 Identities=21% Similarity=0.494 Sum_probs=25.2
Q ss_pred EecCCCCCcccchhhhhhhCCCCCHHHHHhhCCC--CCCCc
Q 004933 9 VPCGKCRTKVYCIQCIKQWYPKMSELDVAEICPF--CRRNC 47 (723)
Q Consensus 9 v~C~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~--Crg~C 47 (723)
|..++|+ ..||-.||.+|...-. ...||+ |+..+
T Consensus 195 Vts~~CG-HsFcR~cI~~~~~~~~----~~~CPvtGCr~~l 230 (267)
T 3htk_C 195 LISRKCN-HVFDRDGIQNYLQGYT----TRDCPQAACSQVV 230 (267)
T ss_dssp EEESSSC-CEEEHHHHHHHSTTCS----CEECSGGGCSCEE
T ss_pred eeeCCCC-CcccHHHHHHHHHhCC----CCCCCcccccCcC
Confidence 4456898 7899999999986421 257999 88744
No 195
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=28.22 E-value=42 Score=28.50 Aligned_cols=36 Identities=25% Similarity=0.732 Sum_probs=28.5
Q ss_pred cCCCCceecCCccccccccc---ccCCCCCcccchhchHH
Q 004933 118 CGNDERVYCNHCATSIIDLH---RSCPKCSYELCLTCCKE 154 (723)
Q Consensus 118 ~~~DER~~CD~C~tSI~D~H---RsC~~CsydLCL~CC~E 154 (723)
.+.++...|..|.++ |.+- -+|..|+.-+|-.|...
T Consensus 16 ~pd~~~~~C~~C~~~-Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 16 QEDEDAPACNGCGCV-FTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCTTTCCBCTTTCCB-CCTTSCCEECTTTCCEECTGGGCC
T ss_pred ccCCCCCCCcCcCCc-cccchhcccccCCCcEEChHHhCC
Confidence 355677789999987 4444 58999999999999864
No 196
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=27.74 E-value=36 Score=31.78 Aligned_cols=72 Identities=17% Similarity=0.305 Sum_probs=42.9
Q ss_pred HHhhhhHhhcHHHhhhhhhhhhhccccCCcccccccccCCCCceecCCccccc-c--cccccCCCCCcccchhchHHHh
Q 004933 81 SLLPFIRQICEEQTQEIEFEASIQRVHSSKVGVSETLCGNDERVYCNHCATSI-I--DLHRSCPKCSYELCLTCCKEIC 156 (723)
Q Consensus 81 ~lLP~lkqi~~EQ~~E~e~Eaki~G~~~sei~i~~a~~~~DER~~CD~C~tSI-~--D~HRsC~~CsydLCL~CC~ElR 156 (723)
.+|+||.+=.+++..|-|.=.+++..- . ++..... .+..-.|.+|..+. | +--+.|..|.+.+|-.|.-...
T Consensus 17 ~Il~Vl~Rd~~l~~~E~~ri~kL~~~l-~--~~k~~~~-~~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~ 91 (134)
T 1zbd_B 17 IINRVIARAEKMETMEQERIGRLVDRL-E--TMRKNVA-GDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETS 91 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHTCC-SCSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECC
T ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHH-H--HHHHHhc-cCCCccccccCCCcccccCCCCCCCCCCcccccccCCccC
Confidence 456666655555444444333333211 0 1111111 24456799999886 3 6678999999999999987664
No 197
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}
Probab=27.71 E-value=23 Score=39.51 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=25.3
Q ss_pred ecCceeEecCCCccccccccccceeeccccCccc
Q 004933 640 KLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 673 (723)
Q Consensus 640 ~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPEn 673 (723)
+.||+|.||||.||=.-|--.-==+++-++.|=|
T Consensus 150 ~~GDvi~iPaG~~~~~~N~g~e~L~~l~~~d~~n 183 (466)
T 3kgl_A 150 RTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLAS 183 (466)
T ss_dssp ETTEEEEECTTCEEEEECCSSSCEEEEEEEESSS
T ss_pred cCCCEEEECCCCcEEEEeCCCCcEEEEEEEcCCC
Confidence 5699999999999999998654444455555543
No 198
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}
Probab=26.75 E-value=28 Score=38.79 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=26.0
Q ss_pred ecCceeEecCCCccccccccccceeeccccCccc
Q 004933 640 KLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPEN 673 (723)
Q Consensus 640 ~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPEn 673 (723)
+.||+|+||||.+|=.-|--+-==|++-++.|-|
T Consensus 135 ~~GDvi~iPaG~~hw~~N~G~~~lv~v~~~d~~n 168 (465)
T 3qac_A 135 REGDIFAMPAGVSHWAYNNGDQPLVAVILIDTAN 168 (465)
T ss_dssp ETTEEEEECTTCEEEEECCSSSCEEEEEEECTTS
T ss_pred cCCCEEEECCCCeEEEEcCCCCCEEEEEEEcCCC
Confidence 6799999999999999998665455555555544
No 199
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=25.97 E-value=33 Score=37.09 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=25.2
Q ss_pred cceEEEeecCceeEecCCCccccccccccc
Q 004933 633 EPWTFEQKLGEAVFIPAGCPHQVRNLKSCT 662 (723)
Q Consensus 633 epWtf~Q~~GeAVFIPAGcPHQVrNL~SCI 662 (723)
.+=+|.=..||++.||+|++||..|...|+
T Consensus 315 ~~~~~~w~~gD~fvvP~w~~h~~~n~~~a~ 344 (368)
T 3nw4_A 315 NGETTKLEKGDMFVVPSWVPWSLQAETQFD 344 (368)
T ss_dssp TTEEEEECTTCEEEECTTCCEEEEESSSEE
T ss_pred CCEEEEecCCCEEEECCCCcEEEEeCCCEE
Confidence 445688889999999999999999976554
No 200
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.87 E-value=33 Score=29.07 Aligned_cols=35 Identities=26% Similarity=0.846 Sum_probs=26.9
Q ss_pred CCCCceecCCcccc--cccccccCCCCCcccchhchH
Q 004933 119 GNDERVYCNHCATS--IIDLHRSCPKCSYELCLTCCK 153 (723)
Q Consensus 119 ~~DER~~CD~C~tS--I~D~HRsC~~CsydLCL~CC~ 153 (723)
+.++...|..|..+ ++.---+|..|+.-+|-.|+.
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 45566789999886 333335899999999999975
No 201
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=24.32 E-value=39 Score=35.87 Aligned_cols=37 Identities=16% Similarity=0.385 Sum_probs=28.4
Q ss_pred CCCceecCCcccccccccc---cCCCCCcccchhchHHHh
Q 004933 120 NDERVYCNHCATSIIDLHR---SCPKCSYELCLTCCKEIC 156 (723)
Q Consensus 120 ~DER~~CD~C~tSI~D~HR---sC~~CsydLCL~CC~ElR 156 (723)
.....+|++|+..+.-+-| +|..|++-+|-.|-.-+.
T Consensus 354 ~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~ 393 (406)
T 2vrw_B 354 FEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP 393 (406)
T ss_dssp CSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC
T ss_pred CCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC
Confidence 3455689999998753322 599999999999987554
No 202
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.10 E-value=34 Score=26.82 Aligned_cols=25 Identities=24% Similarity=0.817 Sum_probs=18.9
Q ss_pred CceecCCcccccccc----cccCCCCCcc
Q 004933 122 ERVYCNHCATSIIDL----HRSCPKCSYE 146 (723)
Q Consensus 122 ER~~CD~C~tSI~D~----HRsC~~Csyd 146 (723)
.+-+|..|..++|-. -..|++|+|.
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSSSCCE
T ss_pred ecccCCCCCCceEEecCCCeEECCCCCCE
Confidence 466899999877655 4479999884
No 203
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.82 E-value=35 Score=27.61 Aligned_cols=25 Identities=36% Similarity=0.887 Sum_probs=19.0
Q ss_pred CCCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCC
Q 004933 12 GKCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRN 46 (723)
Q Consensus 12 ~~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~ 46 (723)
.-|+-..||..|+.+ ...||+||..
T Consensus 31 ~pCgH~~~C~~C~~~----------~~~CP~CR~~ 55 (68)
T 2ea5_A 31 LPCRHTCLCDGCVKY----------FQQCPMCRQF 55 (68)
T ss_dssp TTTTBCCSCTTHHHH----------CSSCTTTCCC
T ss_pred ECCCChhhhHHHHhc----------CCCCCCCCcc
Confidence 457644599999984 2689999974
No 204
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=23.43 E-value=20 Score=34.28 Aligned_cols=35 Identities=23% Similarity=0.691 Sum_probs=29.6
Q ss_pred CceecCCcccc---cccccccCCCCCcccchhchHHHh
Q 004933 122 ERVYCNHCATS---IIDLHRSCPKCSYELCLTCCKEIC 156 (723)
Q Consensus 122 ER~~CD~C~tS---I~D~HRsC~~CsydLCL~CC~ElR 156 (723)
..-.|.+|..+ +++--+-|..|.+-+|-.|+..++
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~ 104 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHP 104 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCS
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccC
Confidence 35689999998 788899999999999999995443
No 205
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=22.99 E-value=30 Score=32.32 Aligned_cols=40 Identities=20% Similarity=0.535 Sum_probs=27.7
Q ss_pred CCCceEecCCCCCcccchhhhhhhCCCCCHHHHH-----hhCCCCC
Q 004933 4 ERKYVVPCGKCRTKVYCIQCIKQWYPKMSELDVA-----EICPFCR 44 (723)
Q Consensus 4 d~~~vv~C~~C~~k~fC~~CI~~wYp~ls~~di~-----~~CP~Cr 44 (723)
+.|.++-|.+|- +.||..||..=...-+.++|. =.|++|+
T Consensus 65 dGG~LlcCd~Cp-r~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 65 EGGNLICCDFCH-NAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp CCSEEEECSSSS-CEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred CCCeeEecCCCc-hhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 567899999999 889999998654322233342 3577773
No 206
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=22.39 E-value=9.5 Score=32.47 Aligned_cols=36 Identities=25% Similarity=0.691 Sum_probs=23.5
Q ss_pred EecCCCCCcccchhhhhhhCCCCCHHH--HHhhCCC--CCC
Q 004933 9 VPCGKCRTKVYCIQCIKQWYPKMSELD--VAEICPF--CRR 45 (723)
Q Consensus 9 v~C~~C~~k~fC~~CI~~wYp~ls~~d--i~~~CP~--Crg 45 (723)
+.-..|+ ..||..|++++.-..-.+. ....||. |+.
T Consensus 21 ~~l~~Cg-H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~ 60 (94)
T 1wim_A 21 TTIAQCQ-CIFCTLCLKQYVELLIKEGLETAISCPDAACPK 60 (94)
T ss_dssp EEETTTT-EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSS
T ss_pred eEcCCCC-CcccHHHHHHHHHHHhhcCCcccccCccccCCC
Confidence 3334688 8899999999875321111 2358998 764
No 207
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=21.31 E-value=25 Score=24.42 Aligned_cols=9 Identities=44% Similarity=1.206 Sum_probs=5.2
Q ss_pred CceecCCcc
Q 004933 122 ERVYCNHCA 130 (723)
Q Consensus 122 ER~~CD~C~ 130 (723)
+|-||++|-
T Consensus 2 ~RpYCe~CE 10 (26)
T 2hqh_E 2 SRPYCEICE 10 (26)
T ss_dssp --CEETTTT
T ss_pred CCccchHHH
Confidence 677887774
No 208
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=21.22 E-value=2e+02 Score=28.49 Aligned_cols=61 Identities=13% Similarity=0.362 Sum_probs=39.2
Q ss_pred hhhhhhhhhhccccCCcccccccccCCCCc------eecCCcccc--cccccccCCCCCcccchhchHH
Q 004933 94 TQEIEFEASIQRVHSSKVGVSETLCGNDER------VYCNHCATS--IIDLHRSCPKCSYELCLTCCKE 154 (723)
Q Consensus 94 ~~E~e~Eaki~G~~~sei~i~~a~~~~DER------~~CD~C~tS--I~D~HRsC~~CsydLCL~CC~E 154 (723)
+.+.--+=|-+|+...+++-..+.+..... -.|-.|.++ ++.=-.+|.+|+.-+|-.|+..
T Consensus 129 i~~~Y~~Lk~~G~~FP~~~~~damf~~~~~p~W~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 129 VQDTYQIMKVEGHVFPEFKESDAMFAAERAPDWVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp HHHHHHHHHHHTCCCCCCCGGGGCCCCCCCCCCCCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred HHHHHHHHHhcCCCcccchhHHHhhhcccccccccCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 334444455678887666655554432211 268899864 3433468999999999999874
No 209
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=21.14 E-value=37 Score=32.18 Aligned_cols=35 Identities=11% Similarity=0.199 Sum_probs=27.4
Q ss_pred EeecCceeEecCCCccccccc----cccceee-----ccccCcc
Q 004933 638 EQKLGEAVFIPAGCPHQVRNL----KSCTKVA-----VDFVSPE 672 (723)
Q Consensus 638 ~Q~~GeAVFIPAGcPHQVrNL----~SCIKVA-----lDFVSPE 672 (723)
.-..||-+++|+|-+|++.+. ..||=.+ +-|+.|.
T Consensus 81 ~~~~Gd~~~~P~g~~H~~~~~~~~~e~~~~~~~~~G~l~~~~~~ 124 (159)
T 3ebr_A 81 VAHAGSVVYETASTRHTPQSAYAEGPDIITFNIVAGELLYLDDK 124 (159)
T ss_dssp CBCTTCEEEECSSEEECEEESSSSSSCEEEEEEEESCEEEECTT
T ss_pred EECCCeEEEECCCCcceeEeCCCCCCCEEEEEEecCccEecCCC
Confidence 345899999999999999998 6787554 4566653
No 210
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=20.97 E-value=63 Score=35.30 Aligned_cols=45 Identities=22% Similarity=0.685 Sum_probs=36.0
Q ss_pred CCceEecC--CCCCcccchhhhhhhCCCCCHHHHHhhCCCCCCCcccccccCc
Q 004933 5 RKYVVPCG--KCRTKVYCIQCIKQWYPKMSELDVAEICPFCRRNCNCSVCLHT 55 (723)
Q Consensus 5 ~~~vv~C~--~C~~k~fC~~CI~~wYp~ls~~di~~~CP~Crg~CNCk~CLr~ 55 (723)
.|.|+-|. +|. +.||..||++..-.-+.++|...-|+ +|=.|...
T Consensus 102 Gg~l~~Cdn~~C~-r~FC~~Ci~~n~g~~~~~~i~~~d~W-----~Cf~C~p~ 148 (386)
T 2pv0_B 102 GETLLICGNPDCT-RCYCFECVDSLVGPGTSGKVHAMSNW-----VCYLCLPS 148 (386)
T ss_dssp CSSCEECCSTTCC-CEECHHHHHHHTCTTHHHHHHHCSSC-----CCTTTSSC
T ss_pred CCeEEEeCCCCCC-cchHHHHHHHhcChhHHHHhhccCCc-----eEEEcCCc
Confidence 46799999 999 78999999999988889999886665 45555543
No 211
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=20.82 E-value=14 Score=35.33 Aligned_cols=42 Identities=21% Similarity=0.308 Sum_probs=32.9
Q ss_pred cCCcCCcceecCHHHHHHHHHHhCccceEEEeecCceeEecCCC
Q 004933 608 IHPIHDQCFYLSSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGC 651 (723)
Q Consensus 608 ~dPIHDQ~fYL~~~hk~kLkeEyGVepWtf~Q~~GeAVFIPAGc 651 (723)
.=|.|...-++.+.+-+.|+++|||..|.| +.||-|.|=+|=
T Consensus 20 ~Ap~h~Rrk~msa~LSkelr~ky~vr~~~I--kkGD~V~Vi~Gk 61 (145)
T 2zkr_t 20 NAPSHIRRKIMSSPLSKELRQKYNVRSMPI--RKDDEVQVVRGH 61 (145)
T ss_dssp TCCHHHHGGGGBC-CCHHHHHC-CC-CCBC--CTTCEEEECSST
T ss_pred cCcHHHHHHHHhcccChhHHhhcCcccccc--CCCCEEEEeecC
Confidence 457888888888888888999999998765 579999999985
No 212
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=20.51 E-value=45 Score=36.38 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=24.9
Q ss_pred EeecCceeEecCCCccccccccccceeeccccCcc
Q 004933 638 EQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPE 672 (723)
Q Consensus 638 ~Q~~GeAVFIPAGcPHQVrNL~SCIKVAlDFVSPE 672 (723)
.=..||+++||+|-||=..|. +-..+..=|.+++
T Consensus 310 ~l~~Gdv~vvP~g~~h~~~n~-~~~~~l~f~~~~~ 343 (416)
T 1uij_A 310 ELSEDDVFVIPAAYPFVVNAT-SNLNFLAFGINAE 343 (416)
T ss_dssp EEETTCEEEECTTCCEEEEES-SSEEEEEEEETCT
T ss_pred EecCCcEEEECCCCeEEEEcC-CCeEEEEEEcCCC
Confidence 667899999999999999998 4444433333443
No 213
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=20.03 E-value=27 Score=26.74 Aligned_cols=12 Identities=42% Similarity=1.068 Sum_probs=6.8
Q ss_pred CCCceecCCccc
Q 004933 120 NDERVYCNHCAT 131 (723)
Q Consensus 120 ~DER~~CD~C~t 131 (723)
..||-|||+|-+
T Consensus 17 ~~eRpYCd~CEv 28 (42)
T 2pzo_E 17 GEERPYCEICEM 28 (42)
T ss_dssp ----CEETTTTE
T ss_pred ccCCcccccccc
Confidence 479999999963
Done!