BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004937
(723 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|B Chain B, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|C Chain C, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|D Chain D, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|E Chain E, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|F Chain F, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|G Chain G, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|H Chain H, Crystal Structure Of The Bromodomain Of Human Brd1
Length = 135
Score = 84.7 bits (208), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/87 (45%), Positives = 60/87 (68%)
Query: 7 LELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESD 66
L +LD+LQ KD ++A+PV +E+PDY D I++PMDF T+RK+L Y +L +FE D
Sbjct: 18 LRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEED 77
Query: 67 VFLICTNAMQYNAPDTVYHKQARAIQE 93
LI N M+YNA DTV+++ A +++
Sbjct: 78 FDLIIDNCMKYNARDTVFYRAAVRLRD 104
>pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
pdb|3HME|B Chain B, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
Length = 123
Score = 84.0 bits (206), Expect = 3e-16, Method: Composition-based stats.
Identities = 42/102 (41%), Positives = 62/102 (60%)
Query: 2 PDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLD 61
P ++ LE L +LQ+KD +G +A PV P Y +I++PMDF T++ K+ Y S+
Sbjct: 13 PIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVT 72
Query: 62 QFESDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLR 103
+F++D L+C NAM YN PDTVY+K A+ I K + R
Sbjct: 73 EFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAGFKMMSKER 114
>pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin
pdb|2RS9|B Chain B, Solution Structure Of The Bromodomain Of Human Brpf1 In
Complex With Histone H4k5ac Peptide
Length = 121
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 57/83 (68%)
Query: 11 LDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLI 70
L++LQ+KDT +++EPV E+PDY D I+ PMDF T+++ L Y + D FE D LI
Sbjct: 16 LEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLI 75
Query: 71 CTNAMQYNAPDTVYHKQARAIQE 93
+N ++YNA DT++++ A ++E
Sbjct: 76 VSNCLKYNAKDTIFYRAAVRLRE 98
>pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7
Protein
Length = 117
Score = 75.9 bits (185), Expect = 8e-14, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 61/90 (67%)
Query: 2 PDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLD 61
P +++L ++ +LQ+KD ++ PV P Y +I++PMDF+T+++K+ N Y S++
Sbjct: 8 PLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIE 67
Query: 62 QFESDVFLICTNAMQYNAPDTVYHKQARAI 91
+ + + L+CTNAM YN P+T+Y+K A+ +
Sbjct: 68 ELKDNFKLMCTNAMIYNKPETIYYKAAKKL 97
>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
pdb|3UV4|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 158
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 3 DKKSLELILDKLQKKDTYGV-----YAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSY 57
D+ + ILD + + V + PV+ + +PDY+ VI NPMD T+RK ++ Y
Sbjct: 26 DQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKY 85
Query: 58 SSLDQFESDVFLICTNAMQYNAPDTVYHKQARAI 91
S + F DV LI N+++YN P++ Y K A+ I
Sbjct: 86 QSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 119
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide
Length = 121
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 53/97 (54%)
Query: 2 PDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLD 61
P +++ IL +LQ + +PV+ EE+PDY+D I+ PMD +T+ KL + Y ++
Sbjct: 13 PHDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKME 72
Query: 62 QFESDVFLICTNAMQYNAPDTVYHKQARAIQELAKKK 98
F D L+ N YN +T Y+K A +++ K
Sbjct: 73 DFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNK 109
>pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human
Bromodomain-Containing Protein 3
Length = 117
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 23 YAEPVDPE--ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP 80
+ +PVD E EL DYHD+I++PMD +TV++K+ Y F +DV L+ +N +YN P
Sbjct: 36 FYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYKYNPP 95
Query: 81 DTVYHKQARAIQELAKKKFHRL 102
D AR +Q++ + +F ++
Sbjct: 96 DHEVVAMARKLQDVFEMRFAKM 117
>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
Length = 292
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 3 DKKSLELILDKLQKKDTYGV-----YAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSY 57
D+ + ILD + + V + PV+ + +PDY+ VI NPMD T+RK ++ Y
Sbjct: 166 DQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKY 225
Query: 58 SSLDQFESDVFLICTNAMQYNAPDTVYHKQARAI 91
S + F DV LI N+++YN P++ Y K A+ I
Sbjct: 226 QSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 259
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%)
Query: 23 YAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDT 82
+ PV+ + + DY+ +I PMD T+R+ + Y S ++F + LI N+ YN P
Sbjct: 68 FHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKH 127
Query: 83 VYHKQARAIQELAKKKF 99
+ ++++ +L +K
Sbjct: 128 SLTQISQSMLDLCDEKL 144
>pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|B Chain B, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|C Chain C, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|D Chain D, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|3S92|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 113
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 23 YAEPVDPE--ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP 80
+ +PVD E EL DYHD+I++PMD +TV++K+ Y F +DV L+ +N +YN P
Sbjct: 31 FYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYKYNPP 90
Query: 81 DTVYHKQARAIQELAKKKFHRL 102
D AR +Q++ + +F ++
Sbjct: 91 DHEVVAMARKLQDVFEMRFAKM 112
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 3 DKKSLELILDKLQKKDTYGV-----YAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSY 57
D+ + ILD + + V + PV+ + +PDY+ VI NPMD T+RK ++ Y
Sbjct: 145 DQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKY 204
Query: 58 SSLDQFESDVFLICTNAMQYNAPDTVYHKQARAI 91
S + F DV LI N+++YN P++ Y K A+ I
Sbjct: 205 QSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 238
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%)
Query: 23 YAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDT 82
+ PV+ + + DY+ +I PMD T+R+ + Y S ++F + LI N+ YN P
Sbjct: 47 FHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKH 106
Query: 83 VYHKQARAIQELAKKKF 99
+ ++++ +L +K
Sbjct: 107 SLTQISQSMLDLCDEKL 123
>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 265
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 3 DKKSLELILDKLQKKDTYGV-----YAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSY 57
D+ + ILD + + V + PV+ + +PDY+ VI NPMD T+RK ++ Y
Sbjct: 133 DQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKY 192
Query: 58 SSLDQFESDVFLICTNAMQYNAPDTVYHKQARAI 91
S + F DV LI N+++YN P++ Y K A+ I
Sbjct: 193 QSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 226
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%)
Query: 23 YAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDT 82
+ PV+ + + DY+ +I PMD T+R+ + Y S ++F + LI N+ YN P
Sbjct: 35 FHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKH 94
Query: 83 VYHKQARAIQELAKKKF 99
+ ++++ +L +K
Sbjct: 95 SLTQISQSMLDLCDEKL 111
>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein
Length = 116
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 60/104 (57%), Gaps = 7/104 (6%)
Query: 5 KSLELILDKLQKKDTYGVYA----EPVDPEELP--DYHDVIENPMDFTTVRKKLANGSYS 58
K +IL +L K + YA +PVD L DYHD+I++PMD +TV++K+ N Y
Sbjct: 4 KHCNVILKELLSK-KHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYR 62
Query: 59 SLDQFESDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRL 102
+F +DV L+ +N +YN PD AR +Q++ + ++ ++
Sbjct: 63 DAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKM 106
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 53/102 (51%)
Query: 3 DKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQ 62
D + L+ +L LQ + EPVDP + PDY+ VI+ PMD T+ +++ Y L +
Sbjct: 73 DYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTE 132
Query: 63 FESDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRA 104
F +D+ I N YN D+ +++ A ++ +K +A
Sbjct: 133 FVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFKA 174
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 53/102 (51%)
Query: 3 DKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQ 62
D + L+ +L LQ + EPVDP + PDY+ VI+ PMD T+ +++ Y L +
Sbjct: 73 DYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTE 132
Query: 63 FESDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRA 104
F +D+ I N YN D+ +++ A ++ +K +A
Sbjct: 133 FVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFKA 174
>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human
Brd2 Protein
pdb|2E3K|A Chain A, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|B Chain B, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|C Chain C, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|D Chain D, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
Length = 112
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 23 YAEPVDPEELP--DYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP 80
+ +PVD L DYHD+I++PMD +TV++K+ N Y +F +DV L+ +N +YN P
Sbjct: 29 FYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPP 88
Query: 81 DTVYHKQARAIQELAKKKFHRL 102
D AR +Q++ + ++ ++
Sbjct: 89 DHDVVAMARKLQDVFEFRYAKM 110
>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2
In Complex With The Inhibitor Jq1
Length = 114
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 23 YAEPVDPEELP--DYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP 80
+ +PVD L DYHD+I++PMD +TV++K+ N Y +F +DV L+ +N +YN P
Sbjct: 31 FYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPP 90
Query: 81 DTVYHKQARAIQELAKKKFHRL 102
D AR +Q++ + ++ ++
Sbjct: 91 DHDVVAMARKLQDVFEFRYAKM 112
>pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l)
Length = 155
Score = 62.4 bits (150), Expect = 8e-10, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 6 SLELILDKLQKKDTYGV-----YAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSL 60
+ ILD + + V + PV+ + +PDY+ +I NP+D T+RK ++ Y S
Sbjct: 26 AFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKMIVNPVDLETIRKNISKHKYQSR 85
Query: 61 DQFESDVFLICTNAMQYNAPDTVYHKQARAI 91
+ F DV LI N+++YN P++ Y K A+ I
Sbjct: 86 ESFLDDVNLILANSVKYNGPESQYTKTAQEI 116
>pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2
Length = 130
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 7 LELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESD 66
L + +L + V+ +PVDP+E+PDY VI+ PMD ++V K+ Y ++ + D
Sbjct: 15 LRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRD 74
Query: 67 VFLICTNAMQYNAPD 81
+ LIC+NA++YN PD
Sbjct: 75 IDLICSNALEYN-PD 88
>pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|B Chain B, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|C Chain C, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|D Chain D, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
Length = 136
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 7 LELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESD 66
L + +L + ++++PVD EE+ DY +VI+ PMD +TV K+ +Y + F D
Sbjct: 17 LRDVTKRLATDKRFNIFSKPVDIEEVSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKD 76
Query: 67 VFLICTNAMQYNAPD 81
+ LIC+NA++YN PD
Sbjct: 77 IDLICSNALEYN-PD 90
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
pdb|3QZS|B Chain B, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
Length = 115
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 53/102 (51%)
Query: 3 DKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQ 62
D + L+ +L LQ + EPVDP + PDY+ VI+ PMD T+ +++ Y L +
Sbjct: 14 DYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTE 73
Query: 63 FESDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRA 104
F +D+ I N YN D+ +++ A ++ +K +A
Sbjct: 74 FVADMTAIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFKA 115
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form Ii
Length = 115
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 53/102 (51%)
Query: 3 DKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQ 62
D + L+ +L LQ + EPVDP + PDY+ VI+ PMD T+ +++ Y L +
Sbjct: 14 DYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTE 73
Query: 63 FESDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRA 104
F +D+ I N YN D+ +++ A ++ +K +A
Sbjct: 74 FVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFKA 115
>pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53
Peptide
pdb|2D82|A Chain A, Target Structure-Based Discovery Of Small Molecules That
Block Human P53 And Creb Binding Protein (Cbp)
Association
pdb|2RNY|A Chain A, Complex Structures Of Cbp Bromodomain With H4 Ack20
Peptide
pdb|2L84|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule J28
pdb|2L85|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule Of Hbs
Length = 121
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Query: 4 KKSLELILDKLQKKDTYGV-YAEPVDPEEL--PDYHDVIENPMDFTTVRKKLANGSYSSL 60
+++L L+ L ++D + + +PVDP+ L PDY D+++NPMD +T+++KL G Y
Sbjct: 15 RQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEP 74
Query: 61 DQFESDVFLICTNAMQYNAPDTVYHKQARAIQELAKKK 98
Q+ DV+L+ NA YN + +K + E+ +++
Sbjct: 75 WQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQE 112
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human
Nucleosome-Remodeling Factor Subunit Bptf
Length = 126
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%)
Query: 3 DKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQ 62
D + L+ +L LQ + EPVDP + PDY+ VI+ PMD T+ +++ Y L +
Sbjct: 21 DYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTE 80
Query: 63 FESDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRAG 105
F +D+ I N YN D+ +++ A ++ +K +A
Sbjct: 81 FVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFKAS 123
>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4
Length = 114
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 23 YAEPVDPEELP--DYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP 80
+ +PVD E L DY D+I++PMD +T++ KL Y +F +DV L+ +N +YN P
Sbjct: 25 FYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPP 84
Query: 81 DTVYHKQARAIQELAKKKFHRL 102
D AR +Q++ + +F ++
Sbjct: 85 DHEVVAMARKLQDVFEMRFAKM 106
>pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|B Chain B, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|C Chain C, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|D Chain D, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|E Chain E, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|F Chain F, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|G Chain G, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|H Chain H, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|I Chain I, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|J Chain J, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|K Chain K, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|L Chain L, Crystal Structure Of The Bromodomain Of Human Ep300
Length = 124
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 59/99 (59%), Gaps = 3/99 (3%)
Query: 4 KKSLELILDKLQKKDTYGV-YAEPVDPEEL--PDYHDVIENPMDFTTVRKKLANGSYSSL 60
+++L L+ L ++D + + +PVDP+ L PDY D++++PMD +T+++KL G Y
Sbjct: 18 RQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKSPMDLSTIKRKLDTGQYQEP 77
Query: 61 DQFESDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKF 99
Q+ D++L+ NA YN + +K + E+ +++
Sbjct: 78 WQYVDDIWLMFNNAWLYNRKTSRVYKYCSKLSEVFEQEI 116
>pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3DWY|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3P1C|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1C|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1D|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1D|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1E|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1E|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1F|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3P1F|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3SVH|A Chain A, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3SVH|B Chain B, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|4A9K|A Chain A, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
pdb|4A9K|B Chain B, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
Length = 119
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Query: 4 KKSLELILDKLQKKDTYGV-YAEPVDPEEL--PDYHDVIENPMDFTTVRKKLANGSYSSL 60
+++L L+ L ++D + + +PVDP+ L PDY D+++NPMD +T+++KL G Y
Sbjct: 13 RQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEP 72
Query: 61 DQFESDVFLICTNAMQYNAPDTVYHKQARAIQELAKKK 98
Q+ DV+L+ NA YN + +K + E+ +++
Sbjct: 73 WQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQE 110
>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
pdb|3JVM|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
Length = 120
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 23 YAEPVDPEELP--DYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP 80
+ +PVD E L DY D+I++PMD +T++ KL + Y +F +DV L+ +N +YN P
Sbjct: 33 FYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPP 92
Query: 81 DTVYHKQARAIQELAKKKFHRL 102
D AR +Q++ + +F ++
Sbjct: 93 DHEVVAMARKLQDVFEMRFAKM 114
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 59.3 bits (142), Expect = 8e-09, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 50/102 (49%)
Query: 3 DKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQ 62
D + L+ +L LQ + EPVDP + PDY+ VI+ P D T +++ Y L +
Sbjct: 73 DYEGLKRVLRSLQAHKXAWPFLEPVDPNDAPDYYGVIKEPXDLATXEERVQRRYYEKLTE 132
Query: 63 FESDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRA 104
F +D I N YN D+ +++ A ++ +K +A
Sbjct: 133 FVADXTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFKA 174
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Adjacent To Zinc Finger Domain 2b
Length = 112
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 54/91 (59%)
Query: 9 LILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVF 68
+IL +++ + + PV+ + +P Y VI+ PMDF+T+R+KL++G Y +L+ F DV
Sbjct: 17 MILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVR 76
Query: 69 LICTNAMQYNAPDTVYHKQARAIQELAKKKF 99
L+ N +N D+ + +++ +KK+
Sbjct: 77 LVFDNCETFNEDDSDIGRAGHNMRKYFEKKW 107
>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc
Finger Domain 2b (Baz2b)
pdb|3Q2F|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With A Triazolo Ligand
pdb|4IR3|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone
(gsk2833282a)
pdb|4IR4|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-(morpholin-4-yl)-1-(pyridin-2-yl)indolizin-3-
yl]ethanone (gsk2834113a)
pdb|4IR5|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(hydroxymethyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2847449a)
pdb|4IR6|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(methylsulfonyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2838097a)
Length = 117
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 3 DKKSLEL---ILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSS 59
D K L L IL +++ + + PV+ + +P Y VI+ PMDF+T+R+KL++G Y +
Sbjct: 11 DSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPN 70
Query: 60 LDQFESDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKF 99
L+ F DV L+ N +N D+ + +++ +KK+
Sbjct: 71 LETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKW 110
>pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase
Bromodomain
pdb|1JM4|B Chain B, Nmr Structure Of PCAF BROMODOMAIN IN COMPLEX WITH HIV-1
Tat Peptide
pdb|1WUG|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np1
pdb|1WUM|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np2
pdb|1ZS5|A Chain A, Structure-Based Evaluation Of Selective And Non-Selective
Small Molecules That Block Hiv-1 Tat And Pcaf
Association
pdb|2RNW|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
pdb|2RNX|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
Length = 118
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%)
Query: 6 SLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFES 65
+L+ IL +++ + + EPV E P Y++VI PMD T+ ++L N Y S F +
Sbjct: 17 TLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMA 76
Query: 66 DVFLICTNAMQYNAPDTVYHKQARAIQEL 94
D+ + TN +YN P++ Y+K A +++
Sbjct: 77 DLQRVFTNCKEYNPPESEYYKCANILEKF 105
>pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf
pdb|3GG3|B Chain B, Crystal Structure Of The Bromodomain Of Human Pcaf
Length = 119
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%)
Query: 6 SLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFES 65
+L+ IL +++ + + EPV E P Y++VI PMD T+ ++L N Y S F +
Sbjct: 19 TLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMA 78
Query: 66 DVFLICTNAMQYNAPDTVYHKQARAIQEL 94
D+ + TN +YN P++ Y+K A +++
Sbjct: 79 DLQRVFTNCKEYNPPESEYYKCANILEKF 107
>pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
pdb|2WP1|B Chain B, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
Length = 126
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 23 YAEPVDPEELP--DYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP 80
+ PVD + L +Y+DV++NPMD T++ K+ N Y +F +DV L+ N +YN P
Sbjct: 38 FYNPVDADALGLHNYYDVVKNPMDLGTIKGKMDNQEYKDAYEFAADVRLMFMNCYKYNPP 97
Query: 81 DTVYHKQARAIQELAKKKFHRL 102
D AR +Q++ + F ++
Sbjct: 98 DHEVVAMARTLQDVFELHFAKI 119
>pdb|2DAT|A Chain A, Solution Structure Of The Bromodomain Of Human SwiSNF
Related Matrix Associated Actin Dependent Regulator Of
Cromatin Subfamily A Member 2
Length = 123
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 6/98 (6%)
Query: 5 KSLELILDK-LQKKDTYG-----VYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYS 58
K + I+D + KD+ G V+ + +ELP+Y+++I P+DF +++++ N Y
Sbjct: 16 KQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYR 75
Query: 59 SLDQFESDVFLICTNAMQYNAPDTVYHKQARAIQELAK 96
SL E DV L+C NA +N + ++ + +Q + K
Sbjct: 76 SLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFK 113
>pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Bromodomain And Wd Repeat-Containing Protein 1 Isoform
A (Wdr9)
Length = 123
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/55 (49%), Positives = 36/55 (65%)
Query: 23 YAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQY 77
+ +PVD E PDY D+I+ PMDF TVR+ L G+Y S +F D+ LI +NA Y
Sbjct: 31 FRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAY 85
>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|2YEM|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|2YEM|B Chain B, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
Length = 130
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 23 YAEPVDPEELP--DYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP 80
+ +PVD E L DY D+I++PMD +T++ KL Y +F +DV L+ +N +YN P
Sbjct: 46 FYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPP 105
Query: 81 DTVYHKQARAIQELAKKKFHRL 102
D AR +Q++ + +F ++
Sbjct: 106 DHEVVAMARKLQDVFEMRFAKM 127
>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With
Nf-Kb-K310ac Peptide
Length = 128
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 23 YAEPVDPEELP--DYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP 80
+ +PVD E L DY D+I++PMD +T++ KL Y +F +DV L+ +N +YN P
Sbjct: 44 FYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPP 103
Query: 81 DTVYHKQARAIQELAKKKFHRL 102
D AR +Q++ + +F ++
Sbjct: 104 DHEVVAMARKLQDVFEMRFAKM 125
>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of
Pleckstrin Homology Domain Interacting Protein (Phip)
Length = 135
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%)
Query: 4 KKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQF 63
KK E +L+ + + + + +PVD E PDY D+I+ PMDF TVR+ L G+Y S +
Sbjct: 23 KKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMEL 82
Query: 64 ESDVFLICTNAMQY 77
DV LI +N+ Y
Sbjct: 83 CKDVRLIFSNSKAY 96
>pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2
pdb|3NXB|B Chain B, Crystal Structure Of The Bromodomain Of Human Cecr2
Length = 116
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 3 DKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQ 62
D ++ +LD ++ + EPVD P+Y+ +I+ PMD +++ KKL G Y + ++
Sbjct: 17 DFTAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEE 76
Query: 63 FESDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHR 101
F +D+ + N +YN + Y K + ++ + FHR
Sbjct: 77 FVNDMKTMFRNCRKYNGESSEYTKMSDNLE----RCFHR 111
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
pdb|2R10|B Chain B, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
Length = 361
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 23 YAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDT 82
+ E VD +ELP+Y++++ +PM + V++ L G YS + F D+ L+ NA +N P
Sbjct: 234 FMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSA 293
Query: 83 VYHKQARAI 91
+ +K A +
Sbjct: 294 LIYKDATTL 302
>pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4
Length = 114
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 23 YAEPVDPEELP--DYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP 80
+ +PVD E L DY D+I++P D +T++ KL + Y +F +DV L +N +YN P
Sbjct: 31 FYKPVDVEALGLHDYCDIIKHPXDXSTIKSKLESREYRDAQEFGADVRLXFSNCYKYNPP 90
Query: 81 DTVYHKQARAIQELAKKKFHR 101
D AR +Q++ + +F +
Sbjct: 91 DHEVVAXARKLQDVFEXRFAK 111
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 3 DKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLAN--GSYSSL 60
DK+ E +L L + + +PV P +PDY+ +I+NPMD +T++K+L YS
Sbjct: 82 DKRKCERLLLFLYCHEMSLAFQDPV-PLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKP 140
Query: 61 DQFESDVFLICTNAMQYNAPDT 82
+ F +D LI N ++N PD+
Sbjct: 141 EDFVADFRLIFQNCAEFNEPDS 162
>pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3K2J|B Chain B, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 130
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 30 EELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHKQAR 89
++ PDY+ I+ P+ +R KL N Y +LD E D+ L+ NA +YN P++ +K+
Sbjct: 51 KKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVL 110
Query: 90 AIQEL--AKKK 98
+Q++ AKKK
Sbjct: 111 KLQQVMQAKKK 121
>pdb|2H60|A Chain A, Solution Structure Of Human Brg1 Bromodomain
Length = 128
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 42/65 (64%)
Query: 30 EELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHKQAR 89
+ELP+Y+++I P+DF +++++ N Y SL+ E DV L+C NA +N ++ ++ +
Sbjct: 42 KELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSI 101
Query: 90 AIQEL 94
+Q +
Sbjct: 102 VLQSV 106
>pdb|3UVD|A Chain A, Crystal Structure Of The Bromodomain Of Human
Transcription Activator Brg1 (Smarca4) In Complex With
N-Methyl-2-Pyrrolidone
Length = 124
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 42/65 (64%)
Query: 30 EELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHKQAR 89
+ELP+Y+++I P+DF +++++ N Y SL+ E DV L+C NA +N ++ ++ +
Sbjct: 47 KELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSI 106
Query: 90 AIQEL 94
+Q +
Sbjct: 107 VLQSV 111
>pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like
2
pdb|3D7C|B Chain B, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like
2
Length = 112
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 2 PDK--KSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSS 59
PD+ +L+ +L +++ + + EPV E PDY++VI P+D T+ ++L + Y +
Sbjct: 5 PDQLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVT 64
Query: 60 LDQFESDVFLICTNAMQYNAPDTVYHKQARAIQEL 94
F +D+ + N +YN PD+ Y + A A+++
Sbjct: 65 RKLFVADLQRVIANCREYNPPDSEYCRCASALEKF 99
>pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human
Gcn5
Length = 103
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 51/89 (57%)
Query: 6 SLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFES 65
+L+ +L +++ + + EPV E PDY++VI P+D T+ ++L + Y + F +
Sbjct: 7 TLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVA 66
Query: 66 DVFLICTNAMQYNAPDTVYHKQARAIQEL 94
D+ + N +YN PD+ Y + A A+++
Sbjct: 67 DLQRVIANCREYNPPDSEYCRCASALEKF 95
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|B Chain B, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|C Chain C, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
Length = 346
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 23 YAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDT 82
+ E VD +ELP+Y++++ +PM + V++ L G YS + F D+ L+ NA +N P
Sbjct: 219 FMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSA 278
Query: 83 VYHKQARAI 91
+ +K A +
Sbjct: 279 LIYKDATTL 287
>pdb|2GRC|A Chain A, 1.5 A Structure Of Bromodomain From Human Brg1 Protein, A
Central Atpase Of SwiSNF REMODELING COMPLEX
Length = 129
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 42/65 (64%)
Query: 30 EELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHKQAR 89
+ELP+Y+++I P+DF +++++ N Y SL+ E DV L+C NA +N ++ ++ +
Sbjct: 46 KELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSI 105
Query: 90 AIQEL 94
+Q +
Sbjct: 106 VLQSV 110
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 31 ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHKQARA 90
+ PDY+ +I+ P+D T+ +++ NGSY S+ D+ L+ NA YN P + K A +
Sbjct: 41 QYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANS 100
Query: 91 IQEL 94
I+++
Sbjct: 101 IKKI 104
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
pdb|3LJW|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
Length = 120
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 31 ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHKQARA 90
+ PDY+ +I+ P+D T+ +++ NGSY S+ D+ L+ NA YN P + K A +
Sbjct: 43 QYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANS 102
Query: 91 IQEL 94
I+++
Sbjct: 103 IKKI 106
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|B Chain B, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|C Chain C, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|4FLP|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
pdb|4FLP|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
Length = 119
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 8 ELILDKLQKKDTYGVYAEPVDPE--ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFES 65
+++L L K + PVD +LPDY+ +I+NPMD T++K+L N Y+ +
Sbjct: 19 KVVLKDLWKHSFSWPFQRPVDAVKLQLPDYYTIIKNPMDLNTIKKRLENKYYAKASECIE 78
Query: 66 DVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRL 102
D + +N YN P A+A+++L +K ++
Sbjct: 79 DFNTMFSNCYLYNKPGDDIVLMAQALEKLFMQKLSQM 115
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human
Polybr Complex With An Acetylated Peptide From Histone 3
Length = 121
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 31 ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHKQARA 90
+ PDY+ +I+ P+D T+ +++ NGSY S+ D+ L+ NA YN P + K A +
Sbjct: 44 QYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANS 103
Query: 91 IQEL 94
I+++
Sbjct: 104 IKKI 107
>pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|B Chain B, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|C Chain C, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|D Chain D, Crystal Sturcture Of Human Bromodomain Protein
Length = 135
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 3 DKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLAN--GSYSSL 60
DK+ E +L L + + +PV P +PDY+ +I+NPMD +T++K+L YS
Sbjct: 21 DKRKCERLLLFLYCHEMSLAFQDPV-PLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKP 79
Query: 61 DQFESDVFLICTNAMQYNAPDT 82
+ F +D LI N ++N PD+
Sbjct: 80 EDFVADFRLIFQNCAEFNEPDS 101
>pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein
Pf10_0328
Length = 166
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 8 ELILDKLQKKDTYGVYAEPVDP--EELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFES 65
+LIL L K + ++ + VD + PDY+DVI+NP F+ ++ KL G Y+ +F
Sbjct: 28 QLIL-SLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPXSFSCIKTKLKKGQYAYPSEFVK 86
Query: 66 DVFLICTNAMQYNAPDTVYHKQARAIQ 92
DV LI N YN ++V + I+
Sbjct: 87 DVQLIFDNCSLYNTSNSVVAITGKNIE 113
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail
Length = 128
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 23 YAEPVDPEEL--PDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP 80
+ +PVD +L PDYH +I+NPMD T++K+L N Y S + D + TN YN P
Sbjct: 40 FYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKP 99
Query: 81 DTVYHKQARAIQELAKKKFHRL 102
A+A++++ +K ++
Sbjct: 100 TDDIVLMAQALEKIFLQKVAQM 121
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|2NXB|B Chain B, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|3S91|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 123
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 23 YAEPVDPEEL--PDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP 80
+ +PVD +L PDYH +I+NPMD T++K+L N Y S + D + TN YN P
Sbjct: 38 FYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKP 97
Query: 81 DTVYHKQARAIQELAKKKFHRL 102
A+A++++ +K ++
Sbjct: 98 TDDIVLMAQALEKIFLQKVAQM 119
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Containing Protein 3
Length = 138
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 23 YAEPVDPEEL--PDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP 80
+ +PVD +L PDYH +I+NPMD T++K+L N Y S + D + TN YN P
Sbjct: 42 FYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQDFNTMFTNCYIYNKP 101
Query: 81 DTVYHKQARAIQELAKKKFHRL 102
A+A++++ +K ++
Sbjct: 102 TDDIVLMAQALEKIFLQKVAQM 123
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9F|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9H|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9I|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9J|A Chain A, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|B Chain B, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|C Chain C, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9M|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9O|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4ALH|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALG|A Chain A, N-Terminal Bromodomain Of Human Brd2 With Ibet-151
Length = 154
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 8 ELILDKLQKKDTYGVYAEPVDPEEL--PDYHDVIENPMDFTTVRKKLANGSYSSLDQFES 65
++++ L K + +PVD +L PDYH +I+ PMD T++++L N Y + +
Sbjct: 38 KVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQ 97
Query: 66 DVFLICTNAMQYNAP 80
D + TN YN P
Sbjct: 98 DFNTMFTNCYIYNKP 112
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YEK|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|4AKN|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
Length = 153
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 8 ELILDKLQKKDTYGVYAEPVDPEEL--PDYHDVIENPMDFTTVRKKLANGSYSSLDQFES 65
++++ L K + +PVD +L PDYH +I+ PMD T++++L N Y + +
Sbjct: 38 KVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQ 97
Query: 66 DVFLICTNAMQYNAP 80
D + TN YN P
Sbjct: 98 DFNTMFTNCYIYNKP 112
>pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein
Kiaa1240
Length = 131
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 7 LELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESD 66
L + +L + ++++PV DY +VI+ PMD +TV K+ +Y + F D
Sbjct: 17 LRDVTKRLATDKRFNIFSKPVS-----DYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKD 71
Query: 67 VFLICTNAMQYNAPD 81
+ LIC+NA++YN PD
Sbjct: 72 IDLICSNALEYN-PD 85
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment
3,4-dihydro-3-methyl-2(1h)- Quinazolinon
Length = 145
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 7 LELILDKLQKKDTYGVYAEPVDPEEL--PDYHDVIENPMDFTTVRKKLANGSYSSLDQFE 64
L ++L L K + +PVD +L PDY+ +I+ PMD T++K+L N Y + +
Sbjct: 46 LRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECI 105
Query: 65 SDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRL 102
D + TN YN P A A+++L +K + L
Sbjct: 106 QDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINEL 143
>pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain
Length = 285
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 23 YAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDT 82
+ E VD +ELP+Y++++ +P + V++ L G YS + F D L+ NA +N P
Sbjct: 178 FXELVDKDELPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFNDPSA 237
Query: 83 VYHKQARAI 91
+ +K A +
Sbjct: 238 LIYKDATTL 246
>pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse
Polybromo-1
Length = 120
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 31 ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHKQARA 90
ELPDY+ I+ PMD +R + Y +D D ++ NA YN P+++ +K A
Sbjct: 50 ELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALV 109
Query: 91 IQEL 94
+ ++
Sbjct: 110 LHKV 113
>pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With
An Acetylated H3 Peptide
Length = 311
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 23 YAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDT 82
+ E VD +ELP+Y++++ +P + V++ L G YS + F D L+ NA +N P
Sbjct: 184 FXELVDKDELPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFNDPSA 243
Query: 83 VYHKQARAI 91
+ +K A +
Sbjct: 244 LIYKDATTL 252
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4
pdb|3JVK|A Chain A, Crystal Structure Of Bromodomain 1 Of Mouse Brd4 In
Complex With Histone H3-K(Ac)14
pdb|3MUK|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Propionylated
Histone H3- K(Prop)23
pdb|3MUL|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Butyrylated
Histone H3- K(Buty)14
Length = 131
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 7 LELILDKLQKKDTYGVYAEPVDPEEL--PDYHDVIENPMDFTTVRKKLANGSYSSLDQFE 64
L ++L L K + +PVD +L PDY+ +I+ PMD T++K+L N Y + +
Sbjct: 30 LRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECI 89
Query: 65 SDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRL 102
D + TN YN P A A+++L +K + L
Sbjct: 90 QDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINEL 127
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazoline Ligand
Length = 127
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 7 LELILDKLQKKDTYGVYAEPVDPEEL--PDYHDVIENPMDFTTVRKKLANGSYSSLDQFE 64
L ++L L K + +PVD +L PDY+ +I+ PMD T++K+L N Y + +
Sbjct: 26 LRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECI 85
Query: 65 SDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRL 102
D + TN YN P A A+++L +K + L
Sbjct: 86 QDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINEL 123
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|3MXF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Jq1
pdb|3P5O|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ibet Inhibitor
pdb|2YEL|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|3SVF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Dihydro-Quinazolin Ligand
pdb|3SVG|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3ZYU|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3ZYU|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3U5J|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Alprazolam
pdb|3U5K|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5L|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Benzo-Triazepine Ligand (Bzt-7)
pdb|4A9L|A Chain A, N-Terminal Bromodomain Of Human Brd4 With 1,3-Dimethyl-6-(
Morpholine-4-Sulfonyl)-1,2,3,
4-Tetrahydroquinazolin-2-One
pdb|3UVW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k5ack8ac)
pdb|3UVY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k16ack20ac)
pdb|3UVX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k12ack16ac)
pdb|3UW9|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|4E96|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Pfi-1
pdb|4F3I|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ms417 Inhibitor
pdb|4GPJ|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Isoxazolylbenzimidazole Ligand
pdb|4HBV|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4J0R|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
pdb|4J0S|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
Length = 127
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 7 LELILDKLQKKDTYGVYAEPVDPEEL--PDYHDVIENPMDFTTVRKKLANGSYSSLDQFE 64
L ++L L K + +PVD +L PDY+ +I+ PMD T++K+L N Y + +
Sbjct: 26 LRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECI 85
Query: 65 SDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRL 102
D + TN YN P A A+++L +K + L
Sbjct: 86 QDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINEL 123
>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3G0J|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3MB4|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
pdb|3MB4|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
Length = 124
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 31 ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHKQARA 90
ELPDY+ I+ PMD +R + Y +D D ++ NA YN P+++ +K A
Sbjct: 50 ELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALV 109
Query: 91 IQEL 94
+ ++
Sbjct: 110 LHKV 113
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 3 DKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLA---NGSYSS 59
D++ E +L L + + EPV P +P+Y+ +I+ PMD +TV+KKL + Y
Sbjct: 82 DQRKCERLLLYLYCHELSIEFQEPV-PASIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQI 140
Query: 60 LDQFESDVFLICTNAMQYN 78
D F +DV LI N ++N
Sbjct: 141 PDDFVADVRLIFKNCERFN 159
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide.
pdb|2WP2|B Chain B, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide
Length = 120
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 9 LILDKLQKKDTYGVYAEPVDPEEL--PDYHDVIENPMDFTTVRKKLANGSYSSLDQFESD 66
++L L K + +PVD +L PDY+ +I+ PMD T++K+L N Y + D
Sbjct: 21 VVLKALWKHGFSWPFQQPVDAVKLKLPDYYTIIKTPMDLNTIKKRLENKYYEKASECIED 80
Query: 67 VFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRL 102
+ +N YN A+A+++L +K ++
Sbjct: 81 FNTMFSNCYLYNKTGDDIVVMAQALEKLFMQKLSQM 116
>pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|B Chain B, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|C Chain C, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
Length = 128
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 23 YAEPVDPEEL--PDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP 80
+ +PVD +L PDYH +I+ P D T++++L N Y + + D TN YN P
Sbjct: 33 FRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDFNTXFTNCYIYNKP 92
>pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|2DVQ|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
Length = 122
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 23 YAEPVDPEEL--PDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP 80
+ +PVD +L PDYH +I+ P D T++++L N Y + + D TN YN P
Sbjct: 27 FRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDFNTXFTNCYIYNKP 86
>pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 33 PDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHKQARAIQ 92
PDY++V+ P+D +++KL Y ++ +D L+ NA Y PD+ +K A +
Sbjct: 42 PDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKLW 101
Query: 93 EL 94
+L
Sbjct: 102 DL 103
>pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3TLP|B Chain B, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 150
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 30 EELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHKQAR 89
++ PDY+ +I PMD + + N Y+ + D+ L+ NA YN + + A
Sbjct: 59 KDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAH 118
Query: 90 AIQELAKKKFHRL 102
+++L K+K L
Sbjct: 119 ILEKLLKEKRKEL 131
>pdb|3MQM|A Chain A, Crystal Structure Of The Bromodomain Of Human Ash1l
pdb|3MQM|B Chain B, Crystal Structure Of The Bromodomain Of Human Ash1l
Length = 126
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 34 DYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQY 77
DY++ I +P+D T+ K++ G Y +++ F++D+ + NA +Y
Sbjct: 47 DYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKY 90
>pdb|2HWJ|A Chain A, Crystal Structure Of Protein Atu1540 From Agrobacterium
Tumefaciens
pdb|2HWJ|B Chain B, Crystal Structure Of Protein Atu1540 From Agrobacterium
Tumefaciens
pdb|2HWJ|C Chain C, Crystal Structure Of Protein Atu1540 From Agrobacterium
Tumefaciens
pdb|2HWJ|D Chain D, Crystal Structure Of Protein Atu1540 From Agrobacterium
Tumefaciens
pdb|2HWJ|E Chain E, Crystal Structure Of Protein Atu1540 From Agrobacterium
Tumefaciens
pdb|2HWJ|F Chain F, Crystal Structure Of Protein Atu1540 From Agrobacterium
Tumefaciens
Length = 205
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 454 GVSRSTEMVPRNMHLLQSSPSKQQNGNVTSNSGNARVISPSS 495
G+ R + +P+N+H L+ P + G + G A+VI P S
Sbjct: 116 GLRRQSGDIPKNIHDLEDDPFRSLAGALRXAGGYAKVIIPFS 157
>pdb|2GJU|A Chain A, Crystal Structure Of Hypothetical Protein Ph1004 From
Pyrococcus Horikoshii Ot3
pdb|2GJU|B Chain B, Crystal Structure Of Hypothetical Protein Ph1004 From
Pyrococcus Horikoshii Ot3
pdb|2GJU|C Chain C, Crystal Structure Of Hypothetical Protein Ph1004 From
Pyrococcus Horikoshii Ot3
pdb|2GJU|D Chain D, Crystal Structure Of Hypothetical Protein Ph1004 From
Pyrococcus Horikoshii Ot3
Length = 252
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 7/41 (17%)
Query: 10 ILDKLQKKDTYGVYAEPVDP---EELPD----YHDVIENPM 43
++DK+ K + +GVY PV+P E LPD Y++ I P+
Sbjct: 125 LVDKIGKNEIFGVYGSPVNPFDGEILPDQPTSYYEAIMRPV 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.128 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,641,882
Number of Sequences: 62578
Number of extensions: 768166
Number of successful extensions: 1294
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1211
Number of HSP's gapped (non-prelim): 84
length of query: 723
length of database: 14,973,337
effective HSP length: 106
effective length of query: 617
effective length of database: 8,340,069
effective search space: 5145822573
effective search space used: 5145822573
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)