Query 004937
Match_columns 723
No_of_seqs 274 out of 1265
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 10:22:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004937.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004937hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d9e_A Peregrin; four-helix bu 99.9 2.2E-25 7.6E-30 205.4 13.5 107 2-108 7-113 (121)
2 3g0l_A Hwalp4, bromodomain adj 99.9 4.5E-25 1.5E-29 201.4 13.2 101 3-103 14-114 (117)
3 3rcw_A Bromodomain-containing 99.9 1.3E-24 4.6E-29 202.9 14.3 108 2-109 13-120 (135)
4 1e6i_A Transcriptional activat 99.9 6.8E-25 2.3E-29 202.0 12.1 101 2-102 13-113 (121)
5 3d7c_A General control of amin 99.9 7.6E-25 2.6E-29 198.7 11.9 99 4-102 9-107 (112)
6 3q2e_A Bromodomain and WD repe 99.9 1.3E-24 4.4E-29 200.3 12.6 105 3-107 11-116 (123)
7 2i7k_A Bromodomain-containing 99.9 1.2E-24 4E-29 199.8 11.8 102 2-103 8-109 (117)
8 3nxb_A CAT eye syndrome critic 99.9 1.2E-24 4E-29 198.3 11.6 99 3-101 17-115 (116)
9 3mb3_A PH-interacting protein; 99.9 2.1E-24 7.3E-29 201.6 13.5 106 3-108 22-128 (135)
10 3hme_A Bromodomain-containing 99.9 1.4E-24 4.8E-29 200.4 11.8 102 2-103 13-114 (123)
11 3fkm_X Signaling protein; brom 99.9 3E-24 1E-28 207.9 11.8 101 3-103 22-124 (166)
12 2grc_A Probable global transcr 99.9 3E-24 1E-28 199.7 11.4 101 4-104 13-120 (129)
13 3mb4_A Protein polybromo-1; PB 99.9 1.9E-24 6.3E-29 199.5 9.8 102 2-103 15-122 (124)
14 2dat_A Possible global transcr 99.9 2.7E-24 9.4E-29 198.3 10.9 99 4-102 15-119 (123)
15 3uv4_A Second bromodomain of h 99.9 3.4E-24 1.2E-28 206.2 11.9 112 4-115 27-143 (158)
16 3mqm_A Probable histone-lysine 99.9 5E-24 1.7E-28 197.0 12.4 107 4-110 11-123 (126)
17 2oss_A HUNK1 protein, bromodom 99.9 3.9E-24 1.3E-28 198.6 11.0 99 4-102 23-123 (127)
18 3p1f_A CREB-binding protein; s 99.9 7.5E-24 2.6E-28 193.8 12.6 102 4-105 13-117 (119)
19 3ljw_A Protein polybromo-1; al 99.9 7.7E-24 2.6E-28 194.4 12.2 101 4-104 10-116 (120)
20 2yyn_A Transcription intermedi 99.9 7.6E-24 2.6E-28 198.5 12.3 101 3-104 21-123 (135)
21 3iu5_A Protein polybromo-1; PB 99.9 6.4E-24 2.2E-28 193.7 11.1 102 3-104 6-113 (116)
22 2ouo_A HUNK1 protein, bromodom 99.9 4.5E-24 1.5E-28 198.9 9.5 101 3-103 23-128 (130)
23 3jvl_A Bromodomain-containing 99.9 2.2E-24 7.4E-29 197.6 7.0 101 3-103 10-115 (120)
24 4alg_A Bromodomain-containing 99.9 1E-23 3.4E-28 202.0 11.0 100 4-103 34-135 (154)
25 3k2j_A Protein polybromo-1; PB 99.9 3E-23 1E-27 193.6 12.6 101 4-104 19-125 (130)
26 3tlp_A Protein polybromo-1; PB 99.9 6.3E-23 2.1E-27 194.8 10.8 103 3-105 25-134 (150)
27 3dai_A ATPase family AAA domai 99.9 1E-22 3.4E-27 189.5 11.9 108 4-111 12-124 (130)
28 2ri7_A Nucleosome-remodeling f 99.9 3.9E-23 1.3E-27 199.4 9.2 100 3-102 73-172 (174)
29 3uv5_A Transcription initiatio 99.9 2.9E-22 9.8E-27 206.1 13.3 111 4-114 16-126 (265)
30 3o36_A Transcription intermedi 99.9 3.9E-22 1.3E-26 194.5 11.7 99 3-102 82-182 (184)
31 3uv5_A Transcription initiatio 99.9 1.4E-21 4.9E-26 200.9 13.6 109 7-115 141-250 (265)
32 2dkw_A Hypothetical protein KI 99.8 2.4E-21 8.1E-26 181.3 9.7 101 4-109 14-119 (131)
33 3u5n_A E3 ubiquitin-protein li 99.8 4.8E-21 1.7E-25 190.4 11.6 100 3-103 82-201 (207)
34 3aad_A Transcription initiatio 99.8 1.3E-20 4.4E-25 196.6 13.2 104 13-116 181-284 (292)
35 2ro1_A Transcription intermedi 99.8 3.9E-21 1.3E-25 189.5 8.2 97 3-104 77-178 (189)
36 3aad_A Transcription initiatio 99.8 8.9E-21 3.1E-25 197.9 9.1 105 4-108 49-153 (292)
37 2r0y_A Chromatin structure-rem 99.8 2.2E-19 7.4E-24 189.3 13.2 86 17-102 178-263 (311)
38 2r10_A Chromatin structure-rem 99.8 3.2E-19 1.1E-23 191.1 13.6 86 17-102 228-313 (361)
39 2r10_A Chromatin structure-rem 99.7 3.8E-18 1.3E-22 182.9 8.1 97 4-102 80-179 (361)
40 2r0y_A Chromatin structure-rem 99.7 8.6E-18 2.9E-22 177.1 8.7 97 4-102 30-129 (311)
41 3iu6_A Protein polybromo-1; PB 99.7 1.3E-16 4.4E-21 152.3 13.3 98 4-105 9-112 (147)
42 3lqh_A Histone-lysine N-methyl 99.3 1.3E-12 4.3E-17 128.9 7.8 94 4-108 77-170 (183)
43 1dum_A Magainin 2; antibiotic, 35.0 2.1 7.2E-05 29.2 -2.8 15 301-315 6-20 (26)
44 3fke_A Polymerase cofactor VP3 20.2 22 0.00076 32.8 0.1 16 299-314 101-116 (129)
No 1
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.92 E-value=2.2e-25 Score=205.37 Aligned_cols=107 Identities=36% Similarity=0.575 Sum_probs=102.8
Q ss_pred CcHHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCC
Q 004937 2 PDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 81 (723)
Q Consensus 2 PdkK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pd 81 (723)
|....|..||+.|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|+.||+|||.||+.||+++
T Consensus 7 pl~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 86 (121)
T 2d9e_A 7 GFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKD 86 (121)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHcCCccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004937 82 TVYHKQARAIQELAKKKFHRLRAGIER 108 (723)
Q Consensus 82 S~Iyk~A~~Le~lfek~~kkL~~eie~ 108 (723)
|.+|.+|..|++.|++.|++++..++.
T Consensus 87 s~~~~~A~~L~~~~~~~l~~~~~~~~~ 113 (121)
T 2d9e_A 87 TIFYRAAVRLREQGGAVLRQARRQAEK 113 (121)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998876554
No 2
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.92 E-value=4.5e-25 Score=201.36 Aligned_cols=101 Identities=29% Similarity=0.520 Sum_probs=98.5
Q ss_pred cHHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCC
Q 004937 3 DKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDT 82 (723)
Q Consensus 3 dkK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS 82 (723)
+.+.|..||+.|++++.+++|.+||+...+||||++|++||||+||++||+++.|.++++|+.||+|||.||+.||+++|
T Consensus 14 ~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s 93 (117)
T 3g0l_A 14 DLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDS 93 (117)
T ss_dssp HHHHHHHHHHHHHTSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCSSS
T ss_pred HHHHHHHHHHHHHhCCCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004937 83 VYHKQARAIQELAKKKFHRLR 103 (723)
Q Consensus 83 ~Iyk~A~~Le~lfek~~kkL~ 103 (723)
.+|.+|..|+++|++.|+++.
T Consensus 94 ~~~~~A~~L~~~f~~~~~~~~ 114 (117)
T 3g0l_A 94 DIGRAGHNMRKYFEKKWTDTF 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998875
No 3
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.92 E-value=1.3e-24 Score=202.94 Aligned_cols=108 Identities=39% Similarity=0.643 Sum_probs=102.8
Q ss_pred CcHHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCC
Q 004937 2 PDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 81 (723)
Q Consensus 2 PdkK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pd 81 (723)
|....|..||+.|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|+.||+|||.||+.||+++
T Consensus 13 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 92 (135)
T 3rcw_A 13 PLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARD 92 (135)
T ss_dssp HHHHHHHHHHHHHHHTCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHhCCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004937 82 TVYHKQARAIQELAKKKFHRLRAGIERS 109 (723)
Q Consensus 82 S~Iyk~A~~Le~lfek~~kkL~~eie~~ 109 (723)
|.+|++|..|++.|++.++.++.+++..
T Consensus 93 s~~~~~A~~L~~~~~~~~~~~~~~~~~~ 120 (135)
T 3rcw_A 93 TVFYRAAVRLRDQGGVVLRQARREVDSI 120 (135)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999987766543
No 4
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.92 E-value=6.8e-25 Score=201.98 Aligned_cols=101 Identities=32% Similarity=0.571 Sum_probs=98.4
Q ss_pred CcHHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCC
Q 004937 2 PDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 81 (723)
Q Consensus 2 PdkK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pd 81 (723)
|..+.|..||+.|++++.+++|.+||+...+||||++|++||||+||++||+++.|.++++|+.||+|||.||+.||+++
T Consensus 13 ~~~~~~~~il~~l~~~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 92 (121)
T 1e6i_A 13 PHDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGEN 92 (121)
T ss_dssp TTHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHcCCCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 004937 82 TVYHKQARAIQELAKKKFHRL 102 (723)
Q Consensus 82 S~Iyk~A~~Le~lfek~~kkL 102 (723)
|.+|.+|..|++.|++.++++
T Consensus 93 s~i~~~A~~L~~~f~~~~~~~ 113 (121)
T 1e6i_A 93 TSYYKYANRLEKFFNNKVKEI 113 (121)
T ss_dssp SHHHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999998776
No 5
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.92 E-value=7.6e-25 Score=198.65 Aligned_cols=99 Identities=27% Similarity=0.463 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCH
Q 004937 4 KKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTV 83 (723)
Q Consensus 4 kK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS~ 83 (723)
++.|..||+.|++++.+++|.+||++..+||||++|++||||+||++||++|.|.++++|..||+|||.||+.||+++|.
T Consensus 9 ~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~ 88 (112)
T 3d7c_A 9 YTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSE 88 (112)
T ss_dssp HHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004937 84 YHKQARAIQELAKKKFHRL 102 (723)
Q Consensus 84 Iyk~A~~Le~lfek~~kkL 102 (723)
+|.+|..|++.|++.++++
T Consensus 89 ~~~~A~~L~~~f~~~~~~~ 107 (112)
T 3d7c_A 89 YCRCASALEKFFYFKLKEG 107 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHC
Confidence 9999999999999998765
No 6
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.91 E-value=1.3e-24 Score=200.32 Aligned_cols=105 Identities=30% Similarity=0.486 Sum_probs=100.7
Q ss_pred cHHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCC-C
Q 004937 3 DKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP-D 81 (723)
Q Consensus 3 dkK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~p-d 81 (723)
.+++|..||+.|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|+.||+|||.||+.||++ +
T Consensus 11 ~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~~ 90 (123)
T 3q2e_A 11 WKKQCKELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPNKR 90 (123)
T ss_dssp HHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTT
T ss_pred HHHHHHHHHHHHHhCCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999999996 8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004937 82 TVYHKQARAIQELAKKKFHRLRAGIE 107 (723)
Q Consensus 82 S~Iyk~A~~Le~lfek~~kkL~~eie 107 (723)
|.+|.+|..|+++|++.++++..++.
T Consensus 91 s~i~~~A~~L~~~f~~~~~~~~~~~~ 116 (123)
T 3q2e_A 91 SKIYSMTLRLSALFEEKMKKISSDFK 116 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999886654
No 7
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.91 E-value=1.2e-24 Score=199.81 Aligned_cols=102 Identities=34% Similarity=0.648 Sum_probs=97.7
Q ss_pred CcHHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCC
Q 004937 2 PDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 81 (723)
Q Consensus 2 PdkK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pd 81 (723)
|.++.|..||+.|++++.+++|..||++..+||||++|++||||+||++||++|.|.++++|..||+|||.||+.||+++
T Consensus 8 ~l~~~l~~il~~L~~~~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~ 87 (117)
T 2i7k_A 8 PLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPE 87 (117)
T ss_dssp HHHHHHHHHHHHHHTSSGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHHHhCcccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 004937 82 TVYHKQARAIQELAKKKFHRLR 103 (723)
Q Consensus 82 S~Iyk~A~~Le~lfek~~kkL~ 103 (723)
|.+|.+|..|++.|++.+..+.
T Consensus 88 s~i~~~A~~L~~~f~~~~~~~~ 109 (117)
T 2i7k_A 88 TIYYKAAKKLLHSGMKILSQER 109 (117)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887653
No 8
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.91 E-value=1.2e-24 Score=198.35 Aligned_cols=99 Identities=25% Similarity=0.478 Sum_probs=96.1
Q ss_pred cHHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCC
Q 004937 3 DKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDT 82 (723)
Q Consensus 3 dkK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS 82 (723)
..+.|..||+.|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|+.||+|||+||+.||+++|
T Consensus 17 ~~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s 96 (116)
T 3nxb_A 17 DFTAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESS 96 (116)
T ss_dssp HHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004937 83 VYHKQARAIQELAKKKFHR 101 (723)
Q Consensus 83 ~Iyk~A~~Le~lfek~~kk 101 (723)
.+|.+|..|++.|++.|.+
T Consensus 97 ~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 97 EYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998864
No 9
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.91 E-value=2.1e-24 Score=201.60 Aligned_cols=106 Identities=28% Similarity=0.444 Sum_probs=101.5
Q ss_pred cHHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCC-C
Q 004937 3 DKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP-D 81 (723)
Q Consensus 3 dkK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~p-d 81 (723)
.++.|..||+.|++++.+++|.+||+...+||||++|++||||+||++||+++.|.++++|+.||+|||.||+.||++ +
T Consensus 22 l~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~~ 101 (135)
T 3mb3_A 22 WKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKR 101 (135)
T ss_dssp HHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTT
T ss_pred HHHHHHHHHHHHHhCCCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999999997 8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004937 82 TVYHKQARAIQELAKKKFHRLRAGIER 108 (723)
Q Consensus 82 S~Iyk~A~~Le~lfek~~kkL~~eie~ 108 (723)
|.+|.+|..|+++|++.|.++..++..
T Consensus 102 s~i~~~A~~L~~~f~~~~~~~~~~~~~ 128 (135)
T 3mb3_A 102 SRIYSMSLRLSAFFEEHISSVLSDYKS 128 (135)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998776644
No 10
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.91 E-value=1.4e-24 Score=200.43 Aligned_cols=102 Identities=41% Similarity=0.677 Sum_probs=98.7
Q ss_pred CcHHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCC
Q 004937 2 PDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 81 (723)
Q Consensus 2 PdkK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pd 81 (723)
|.++.|+.||+.|++++.+++|..||++..+||||++|++||||+||++||+++.|.++++|+.||+|||.||+.||+++
T Consensus 13 p~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 92 (123)
T 3hme_A 13 PIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPD 92 (123)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHhCCccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 004937 82 TVYHKQARAIQELAKKKFHRLR 103 (723)
Q Consensus 82 S~Iyk~A~~Le~lfek~~kkL~ 103 (723)
|.+|.+|..|.+.|.+.|.+.+
T Consensus 93 s~~~~~A~~L~~~~~~~~~~~~ 114 (123)
T 3hme_A 93 TVYYKLAKKILHAGFKMMSKER 114 (123)
T ss_dssp SHHHHHHHHHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987654
No 11
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.91 E-value=3e-24 Score=207.85 Aligned_cols=101 Identities=28% Similarity=0.438 Sum_probs=94.8
Q ss_pred cHHHHHHHHHHHHccCCCCcccCCCCCC--CCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCC
Q 004937 3 DKKSLELILDKLQKKDTYGVYAEPVDPE--ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP 80 (723)
Q Consensus 3 dkK~Le~ILd~L~k~d~s~pF~ePVd~e--elPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~p 80 (723)
.++.|..||+.|++++.+++|..||++. .+||||+||++||||+||++||+++.|.++++|+.||+|||.||+.||++
T Consensus 22 ~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~ 101 (166)
T 3fkm_X 22 WYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLYNTS 101 (166)
T ss_dssp HHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 3689999999999999999999999976 59999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 004937 81 DTVYHKQARAIQELAKKKFHRLR 103 (723)
Q Consensus 81 dS~Iyk~A~~Le~lfek~~kkL~ 103 (723)
+|.+|.+|..|+++|++.|.++.
T Consensus 102 ~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 102 NSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999998764
No 12
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.91 E-value=3e-24 Score=199.69 Aligned_cols=101 Identities=26% Similarity=0.526 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHccC-------CCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhh
Q 004937 4 KKSLELILDKLQKKD-------TYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQ 76 (723)
Q Consensus 4 kK~Le~ILd~L~k~d-------~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~ 76 (723)
++.|..||+.|++++ .+++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.
T Consensus 13 ~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~ 92 (129)
T 2grc_A 13 TKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQT 92 (129)
T ss_dssp HHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 588999999999875 4789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004937 77 YNAPDTVYHKQARAIQELAKKKFHRLRA 104 (723)
Q Consensus 77 YN~pdS~Iyk~A~~Le~lfek~~kkL~~ 104 (723)
||+++|.+|.+|..|+++|++.++++..
T Consensus 93 yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 120 (129)
T 2grc_A 93 FNLEGSLIYEDSIVLQSVFTSVRQKIEK 120 (129)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999999988753
No 13
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.90 E-value=1.9e-24 Score=199.52 Aligned_cols=102 Identities=23% Similarity=0.453 Sum_probs=96.4
Q ss_pred CcHHHHHHHHHHHHcc------CCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhh
Q 004937 2 PDKKSLELILDKLQKK------DTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAM 75 (723)
Q Consensus 2 PdkK~Le~ILd~L~k~------d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~ 75 (723)
|.+++|..||+.|+++ +.+++|.+||+...+||||++|++||||+||++||+++.|.++++|+.||+|||.||+
T Consensus 15 ~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 94 (124)
T 3mb4_A 15 PMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNAC 94 (124)
T ss_dssp HHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 4578999999999984 4569999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004937 76 QYNAPDTVYHKQARAIQELAKKKFHRLR 103 (723)
Q Consensus 76 ~YN~pdS~Iyk~A~~Le~lfek~~kkL~ 103 (723)
.||+++|.+|.+|..|+++|++.++++.
T Consensus 95 ~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 95 TYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998764
No 14
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=2.7e-24 Score=198.31 Aligned_cols=99 Identities=26% Similarity=0.498 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHccC------CCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhc
Q 004937 4 KKSLELILDKLQKKD------TYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQY 77 (723)
Q Consensus 4 kK~Le~ILd~L~k~d------~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~Y 77 (723)
++.|..||+.|++++ .+++|.+||+...+||||++|++||||+||++||+++.|.++++|+.||+|||.||+.|
T Consensus 15 ~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 94 (123)
T 2dat_A 15 TKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTF 94 (123)
T ss_dssp HHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 578999999999876 57899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 004937 78 NAPDTVYHKQARAIQELAKKKFHRL 102 (723)
Q Consensus 78 N~pdS~Iyk~A~~Le~lfek~~kkL 102 (723)
|.++|.+|.+|..|+++|++.++++
T Consensus 95 N~~~s~i~~~A~~L~~~f~~~~~~~ 119 (123)
T 2dat_A 95 NLEGSQIYEDSIVLQSVFKSARQSG 119 (123)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999888754
No 15
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.90 E-value=3.4e-24 Score=206.19 Aligned_cols=112 Identities=30% Similarity=0.537 Sum_probs=100.7
Q ss_pred HHHHHHHHHHH-----HccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcC
Q 004937 4 KKSLELILDKL-----QKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYN 78 (723)
Q Consensus 4 kK~Le~ILd~L-----~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN 78 (723)
...|..||+.| ++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|+.||+|||.||+.||
T Consensus 27 ~~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN 106 (158)
T 3uv4_A 27 QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN 106 (158)
T ss_dssp HHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34555555554 5578899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCh
Q 004937 79 APDTVYHKQARAIQELAKKKFHRLRAGIERSEKELKP 115 (723)
Q Consensus 79 ~pdS~Iyk~A~~Le~lfek~~kkL~~eie~~E~Elk~ 115 (723)
+++|.+|++|..|.++|.+.+.++...+...+.++..
T Consensus 107 ~~~s~i~~~A~~L~~~~~~~l~e~~~~l~~le~~i~~ 143 (158)
T 3uv4_A 107 GPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICT 143 (158)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888776665543
No 16
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.90 E-value=5e-24 Score=196.96 Aligned_cols=107 Identities=18% Similarity=0.305 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHccCC------CCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhc
Q 004937 4 KKSLELILDKLQKKDT------YGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQY 77 (723)
Q Consensus 4 kK~Le~ILd~L~k~d~------s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~Y 77 (723)
++.|..|++.|+++.+ +++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.|
T Consensus 11 ~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 90 (126)
T 3mqm_A 11 AQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKY 90 (126)
T ss_dssp HHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5789999999988754 8899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 004937 78 NAPDTVYHKQARAIQELAKKKFHRLRAGIERSE 110 (723)
Q Consensus 78 N~pdS~Iyk~A~~Le~lfek~~kkL~~eie~~E 110 (723)
|+++|.+|.+|..|+++|++.+.++...++...
T Consensus 91 N~~~s~~~~~A~~L~~~f~~~~~~~~~~l~~i~ 123 (126)
T 3mqm_A 91 YGRKSPVGRDVCRLRKAYYNARHEASAQIDEIV 123 (126)
T ss_dssp HCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988776543
No 17
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.90 E-value=3.9e-24 Score=198.61 Aligned_cols=99 Identities=31% Similarity=0.471 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHccCCCCcccCCCCCC--CCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCC
Q 004937 4 KKSLELILDKLQKKDTYGVYAEPVDPE--ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 81 (723)
Q Consensus 4 kK~Le~ILd~L~k~d~s~pF~ePVd~e--elPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pd 81 (723)
+..|+.||+.|++++.+++|.+|||.. .+||||++|++||||+||++||+++.|.++++|+.||+|||+||+.||+++
T Consensus 23 ~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 102 (127)
T 2oss_A 23 QYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPG 102 (127)
T ss_dssp HHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 466788999999999999999999975 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 004937 82 TVYHKQARAIQELAKKKFHRL 102 (723)
Q Consensus 82 S~Iyk~A~~Le~lfek~~kkL 102 (723)
|.+|.+|..|++.|++.|.++
T Consensus 103 s~i~~~A~~L~~~f~~~~~~l 123 (127)
T 2oss_A 103 DDIVLMAEALEKLFLQKINEL 123 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999988765
No 18
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.90 E-value=7.5e-24 Score=193.83 Aligned_cols=102 Identities=29% Similarity=0.549 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHc-cCCCCcccCCCCCC--CCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCC
Q 004937 4 KKSLELILDKLQK-KDTYGVYAEPVDPE--ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP 80 (723)
Q Consensus 4 kK~Le~ILd~L~k-~d~s~pF~ePVd~e--elPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~p 80 (723)
.+.|..+|+.|++ ++.+++|.+||++. ++||||++|++||||+||++||+++.|.++++|+.||+|||+||+.||++
T Consensus 13 ~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 92 (119)
T 3p1f_A 13 RQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRK 92 (119)
T ss_dssp HHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4789999999988 67999999999988 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHh
Q 004937 81 DTVYHKQARAIQELAKKKFHRLRAG 105 (723)
Q Consensus 81 dS~Iyk~A~~Le~lfek~~kkL~~e 105 (723)
+|.+|.+|..|++.|++.++.+.+.
T Consensus 93 ~s~i~~~A~~L~~~f~~~~~~~~~~ 117 (119)
T 3p1f_A 93 TSRVYKFCSKLAEVFEQEIDPVMQS 117 (119)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988654
No 19
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.90 E-value=7.7e-24 Score=194.38 Aligned_cols=101 Identities=27% Similarity=0.490 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHccCC------CCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhc
Q 004937 4 KKSLELILDKLQKKDT------YGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQY 77 (723)
Q Consensus 4 kK~Le~ILd~L~k~d~------s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~Y 77 (723)
++.|+.|++.|.++.+ +++|.+||+...+||||++|++||||+||++||+++.|.++++|+.||+|||.||+.|
T Consensus 10 ~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 89 (120)
T 3ljw_A 10 KEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTY 89 (120)
T ss_dssp HHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5789999999998776 8899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004937 78 NAPDTVYHKQARAIQELAKKKFHRLRA 104 (723)
Q Consensus 78 N~pdS~Iyk~A~~Le~lfek~~kkL~~ 104 (723)
|+++|.+|.+|..|+++|++.|.++..
T Consensus 90 N~~~s~~~~~A~~L~~~f~~~~~~i~~ 116 (120)
T 3ljw_A 90 NEPGSQVFKDANSIKKIFYMKKAEIEH 116 (120)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999988753
No 20
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.90 E-value=7.6e-24 Score=198.53 Aligned_cols=101 Identities=29% Similarity=0.495 Sum_probs=96.1
Q ss_pred cHHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhc--CCCCCHHHHHHHHHHHHHhhhhcCCC
Q 004937 3 DKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLAN--GSYSSLDQFESDVFLICTNAMQYNAP 80 (723)
Q Consensus 3 dkK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkn--g~Y~SieEF~~DV~LIf~NA~~YN~p 80 (723)
+++.|+.||+.|++++.+++|.+||+. .+||||++|++||||+||++||++ +.|.++++|++||+|||.||++||.+
T Consensus 21 ~~~~c~~il~~L~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~ 99 (135)
T 2yyn_A 21 DKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEP 99 (135)
T ss_dssp HHHHHHHHHHHHHTSGGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHhCccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 468999999999999999999999987 799999999999999999999998 59999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q 004937 81 DTVYHKQARAIQELAKKKFHRLRA 104 (723)
Q Consensus 81 dS~Iyk~A~~Le~lfek~~kkL~~ 104 (723)
+|.+|.+|..|+++|++.++++..
T Consensus 100 ~s~i~~~A~~L~~~f~~~~~~~~~ 123 (135)
T 2yyn_A 100 DSEVANAGIKLENYFEELLKNLYP 123 (135)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999988753
No 21
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.90 E-value=6.4e-24 Score=193.70 Aligned_cols=102 Identities=19% Similarity=0.340 Sum_probs=97.0
Q ss_pred cHHHHHHHHHHHHccC------CCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhh
Q 004937 3 DKKSLELILDKLQKKD------TYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQ 76 (723)
Q Consensus 3 dkK~Le~ILd~L~k~d------~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~ 76 (723)
..++|..|++.|+++. .+++|.+||+...+||||++|++||||+||++||+++.|.++++|+.||+|||.||+.
T Consensus 6 ~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 85 (116)
T 3iu5_A 6 PIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKS 85 (116)
T ss_dssp HHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4689999999999874 4889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004937 77 YNAPDTVYHKQARAIQELAKKKFHRLRA 104 (723)
Q Consensus 77 YN~pdS~Iyk~A~~Le~lfek~~kkL~~ 104 (723)
||+++|.+|.+|..|+++|++.++++.+
T Consensus 86 yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 86 YYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998863
No 22
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.90 E-value=4.5e-24 Score=198.90 Aligned_cols=101 Identities=33% Similarity=0.546 Sum_probs=94.7
Q ss_pred cHHHHHHHHHHHHccCC---CCcccCCCCCCC--CCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhc
Q 004937 3 DKKSLELILDKLQKKDT---YGVYAEPVDPEE--LPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQY 77 (723)
Q Consensus 3 dkK~Le~ILd~L~k~d~---s~pF~ePVd~ee--lPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~Y 77 (723)
..+.|..||+.|+.++. +++|.+|||+.. +||||+||++||||+||++||+++.|.++++|+.||+|||.||++|
T Consensus 23 ~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~y 102 (130)
T 2ouo_A 23 QLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKY 102 (130)
T ss_dssp HHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35789999999998875 789999999874 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004937 78 NAPDTVYHKQARAIQELAKKKFHRLR 103 (723)
Q Consensus 78 N~pdS~Iyk~A~~Le~lfek~~kkL~ 103 (723)
|+++|.+|.+|..|++.|++.|.++.
T Consensus 103 N~~~s~i~~~A~~L~~~f~~~~~~lp 128 (130)
T 2ouo_A 103 NPPDHEVVAMARKLQDVFEMRFAKMP 128 (130)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHTSC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999997763
No 23
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.90 E-value=2.2e-24 Score=197.64 Aligned_cols=101 Identities=33% Similarity=0.549 Sum_probs=96.3
Q ss_pred cHHHHHHHHHHHHccCC---CCcccCCCCCCC--CCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhc
Q 004937 3 DKKSLELILDKLQKKDT---YGVYAEPVDPEE--LPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQY 77 (723)
Q Consensus 3 dkK~Le~ILd~L~k~d~---s~pF~ePVd~ee--lPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~Y 77 (723)
..+.|..||+.|.+++. +++|.+||++.. +||||++|++||||+||++||+++.|.++++|+.||+|||.||+.|
T Consensus 10 ~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 89 (120)
T 3jvl_A 10 QLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKY 89 (120)
T ss_dssp HHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46899999999999887 899999999988 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004937 78 NAPDTVYHKQARAIQELAKKKFHRLR 103 (723)
Q Consensus 78 N~pdS~Iyk~A~~Le~lfek~~kkL~ 103 (723)
|+++|.+|.+|..|++.|++.|.++.
T Consensus 90 N~~~s~~~~~A~~L~~~f~~~~~~~p 115 (120)
T 3jvl_A 90 NPPDHEVVAMARKLQDVFEMRFAKMP 115 (120)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCc
Confidence 99999999999999999999997764
No 24
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.90 E-value=1e-23 Score=201.96 Aligned_cols=100 Identities=26% Similarity=0.440 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHccCCCCcccCCCCCC--CCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCC
Q 004937 4 KKSLELILDKLQKKDTYGVYAEPVDPE--ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 81 (723)
Q Consensus 4 kK~Le~ILd~L~k~d~s~pF~ePVd~e--elPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pd 81 (723)
+.+|..||+.|++++.+++|.+||++. .+||||+||++||||+||++||+++.|.++++|+.||+|||.||++||.++
T Consensus 34 ~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~ 113 (154)
T 4alg_A 34 QYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPT 113 (154)
T ss_dssp HHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 456788999999999999999999988 699999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 004937 82 TVYHKQARAIQELAKKKFHRLR 103 (723)
Q Consensus 82 S~Iyk~A~~Le~lfek~~kkL~ 103 (723)
+.+|.+|..|+++|++.|.++.
T Consensus 114 s~i~~~A~~L~~~f~~~~~~l~ 135 (154)
T 4alg_A 114 DDIVLMAQTLEKIFLQKVASMP 135 (154)
T ss_dssp SHHHHHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999987763
No 25
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.89 E-value=3e-23 Score=193.60 Aligned_cols=101 Identities=25% Similarity=0.399 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHccCC------CCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhc
Q 004937 4 KKSLELILDKLQKKDT------YGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQY 77 (723)
Q Consensus 4 kK~Le~ILd~L~k~d~------s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~Y 77 (723)
.+.|..|++.|.+..+ +++|.+||+...+||||++|++||||+||++||+++.|.++++|+.||+|||.||+.|
T Consensus 19 ~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~y 98 (130)
T 3k2j_A 19 YFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRY 98 (130)
T ss_dssp HHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4678899999988654 8899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004937 78 NAPDTVYHKQARAIQELAKKKFHRLRA 104 (723)
Q Consensus 78 N~pdS~Iyk~A~~Le~lfek~~kkL~~ 104 (723)
|+++|.+|++|..|+++|++.|+++..
T Consensus 99 N~~~s~i~~~A~~L~~~f~~~~~~l~~ 125 (130)
T 3k2j_A 99 NVPNSAIYKRVLKLQQVMQAKKKELAR 125 (130)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988853
No 26
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.88 E-value=6.3e-23 Score=194.78 Aligned_cols=103 Identities=20% Similarity=0.393 Sum_probs=96.5
Q ss_pred cHHHHHHHHHHHHccCC-------CCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhh
Q 004937 3 DKKSLELILDKLQKKDT-------YGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAM 75 (723)
Q Consensus 3 dkK~Le~ILd~L~k~d~-------s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~ 75 (723)
.+++|+.|++.|+++.. +++|..||+...+||||++|++||||+||++||+++.|.++++|+.||+|||+||+
T Consensus 25 ~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~ 104 (150)
T 3tlp_A 25 RKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNAR 104 (150)
T ss_dssp HHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 36789999999988654 78999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 004937 76 QYNAPDTVYHKQARAIQELAKKKFHRLRAG 105 (723)
Q Consensus 76 ~YN~pdS~Iyk~A~~Le~lfek~~kkL~~e 105 (723)
.||+++|.+|.+|..|+++|++.|+++...
T Consensus 105 ~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 134 (150)
T 3tlp_A 105 HYNEEGSQVYNDAHILEKLLKEKRKELGPL 134 (150)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999999887543
No 27
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.88 E-value=1e-22 Score=189.53 Aligned_cols=108 Identities=30% Similarity=0.536 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCH
Q 004937 4 KKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTV 83 (723)
Q Consensus 4 kK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS~ 83 (723)
+..|..|++.|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|+.||+|||+||+.||+++|.
T Consensus 12 ~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~ 91 (130)
T 3dai_A 12 RIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDRDP 91 (130)
T ss_dssp HHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCCSSSH
T ss_pred HHHHHHHHHHHHcCCccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred H----HHHHHHHHHHHHHHHH-HHHHhHHHHhh
Q 004937 84 Y----HKQARAIQELAKKKFH-RLRAGIERSEK 111 (723)
Q Consensus 84 I----yk~A~~Le~lfek~~k-kL~~eie~~E~ 111 (723)
+ +..|..|++.+...++ .+..++.....
T Consensus 92 ~~~~i~~~A~~L~~~~~~~i~~el~~~~~~~ce 124 (130)
T 3dai_A 92 GDRLIRHRACALRDTAYAIIKEELDEDFEQLCE 124 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6 7788888888877774 44444444333
No 28
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.88 E-value=3.9e-23 Score=199.36 Aligned_cols=100 Identities=30% Similarity=0.530 Sum_probs=96.2
Q ss_pred cHHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCC
Q 004937 3 DKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDT 82 (723)
Q Consensus 3 dkK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS 82 (723)
+++.|+.||+.|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|++||+|||+||+.||+++|
T Consensus 73 ~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s 152 (174)
T 2ri7_A 73 DYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDS 152 (174)
T ss_dssp HHHHHHHHHHHHHTSGGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHhhhhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004937 83 VYHKQARAIQELAKKKFHRL 102 (723)
Q Consensus 83 ~Iyk~A~~Le~lfek~~kkL 102 (723)
.+|.+|..|+++|++.++++
T Consensus 153 ~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 153 PFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999988654
No 29
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.87 E-value=2.9e-22 Score=206.12 Aligned_cols=111 Identities=24% Similarity=0.465 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCH
Q 004937 4 KKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTV 83 (723)
Q Consensus 4 kK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS~ 83 (723)
...|+.||+.|++++.+++|..||++..+||||++|++||||+||++||+++.|.++++|+.||+|||+||+.||+++|.
T Consensus 16 ~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~ 95 (265)
T 3uv5_A 16 SSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHS 95 (265)
T ss_dssp HHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHcCCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCCCCCh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhcC
Q 004937 84 YHKQARAIQELAKKKFHRLRAGIERSEKELK 114 (723)
Q Consensus 84 Iyk~A~~Le~lfek~~kkL~~eie~~E~Elk 114 (723)
+|.+|..|.++|++.++++...+...+..+.
T Consensus 96 i~~~A~~l~~~~~~~~~~~~~~~~~~ek~i~ 126 (265)
T 3uv5_A 96 LTQISQSMLDLCDEKLKEKEDKLARLEKAIN 126 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 9999999999999999888776655554433
No 30
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.87 E-value=3.9e-22 Score=194.53 Aligned_cols=99 Identities=29% Similarity=0.510 Sum_probs=94.7
Q ss_pred cHHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhc--CCCCCHHHHHHHHHHHHHhhhhcCCC
Q 004937 3 DKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLAN--GSYSSLDQFESDVFLICTNAMQYNAP 80 (723)
Q Consensus 3 dkK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkn--g~Y~SieEF~~DV~LIf~NA~~YN~p 80 (723)
++++|+.||..|++++.+++|.+||+. .+||||+||++||||+||++||++ +.|.++++|++||+|||+||+.||++
T Consensus 82 ~~~~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~~yN~~ 160 (184)
T 3o36_A 82 DKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEP 160 (184)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHhchhhhhhcccccc-CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 367899999999999999999999985 489999999999999999999998 79999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 004937 81 DTVYHKQARAIQELAKKKFHRL 102 (723)
Q Consensus 81 dS~Iyk~A~~Le~lfek~~kkL 102 (723)
+|.+|.+|..|+++|++.|+++
T Consensus 161 ~s~v~~~a~~L~~~f~~~~~~~ 182 (184)
T 3o36_A 161 DSEVANAGIKLENYFEELLKNL 182 (184)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999876
No 31
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.86 E-value=1.4e-21 Score=200.92 Aligned_cols=109 Identities=31% Similarity=0.534 Sum_probs=98.3
Q ss_pred HHHHHH-HHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCHHH
Q 004937 7 LELILD-KLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYH 85 (723)
Q Consensus 7 Le~ILd-~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS~Iy 85 (723)
|..|+. .|++++.+++|..||+...+||||++|++||||+||++||+++.|.++++|+.||+|||.||+.||+++|.+|
T Consensus 141 l~~i~~~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~s~~~ 220 (265)
T 3uv5_A 141 LDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYT 220 (265)
T ss_dssp HHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHHHHHHHhhhhhHHHhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 444443 3667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhcCh
Q 004937 86 KQARAIQELAKKKFHRLRAGIERSEKELKP 115 (723)
Q Consensus 86 k~A~~Le~lfek~~kkL~~eie~~E~Elk~ 115 (723)
.+|..|.++|.+.+.++...+...+.++..
T Consensus 221 ~~A~~l~~~~~~~~~~~~~~~~~~e~~i~~ 250 (265)
T 3uv5_A 221 KTAQEIVNVCYQTLTEYDEHLTQLEKDICT 250 (265)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999998887766665543
No 32
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.4e-21 Score=181.26 Aligned_cols=101 Identities=26% Similarity=0.523 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCH
Q 004937 4 KKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTV 83 (723)
Q Consensus 4 kK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS~ 83 (723)
+..|..||+.|++++.+++|.+| +||||+||++||||+||++||+++.|.++++|+.||+|||.||+.||+++|.
T Consensus 14 ~~~~~~il~~l~~~~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~ 88 (131)
T 2dkw_A 14 RLFLRDVTKRLATDKRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKDP 88 (131)
T ss_dssp HHHHHHHHHHHHHSGGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSCCCSST
T ss_pred HHHHHHHHHHHHhCccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCh
Confidence 46899999999999999999998 8999999999999999999999999999999999999999999999999984
Q ss_pred ----HHHHHHHHHHHHHHHHH-HHHHhHHHH
Q 004937 84 ----YHKQARAIQELAKKKFH-RLRAGIERS 109 (723)
Q Consensus 84 ----Iyk~A~~Le~lfek~~k-kL~~eie~~ 109 (723)
++..|..|++.+...+. .+...+...
T Consensus 89 ~~~~i~~~A~~L~~~~~~~l~~~l~~~f~~~ 119 (131)
T 2dkw_A 89 GDKIIRHRACTLKDTAHAIIAAELDPEFNKL 119 (131)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSCTTTHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999998888773 444444443
No 33
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.84 E-value=4.8e-21 Score=190.37 Aligned_cols=100 Identities=30% Similarity=0.482 Sum_probs=95.2
Q ss_pred cHHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhc---CCCCCHHHHHHHHHHHHHhhhhcCC
Q 004937 3 DKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLAN---GSYSSLDQFESDVFLICTNAMQYNA 79 (723)
Q Consensus 3 dkK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkn---g~Y~SieEF~~DV~LIf~NA~~YN~ 79 (723)
++++|+.||..|++++.+++|.+||+. .+||||+||++||||+||++||++ +.|.++++|+.||+|||+||+.||.
T Consensus 82 ~~~~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~~yN~ 160 (207)
T 3u5n_A 82 DQRKCERLLLYLYCHELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNE 160 (207)
T ss_dssp HHHHHHHHHHHHHTSTTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHHHHHCC
Confidence 367899999999999999999999986 799999999999999999999997 7999999999999999999999999
Q ss_pred -----------------CCCHHHHHHHHHHHHHHHHHHHHH
Q 004937 80 -----------------PDTVYHKQARAIQELAKKKFHRLR 103 (723)
Q Consensus 80 -----------------pdS~Iyk~A~~Le~lfek~~kkL~ 103 (723)
+++.++++|..|+.+|++.|+++-
T Consensus 161 ~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~ 201 (207)
T 3u5n_A 161 MMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIY 201 (207)
T ss_dssp HHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998874
No 34
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=196.64 Aligned_cols=104 Identities=31% Similarity=0.529 Sum_probs=97.2
Q ss_pred HHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHH
Q 004937 13 KLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHKQARAIQ 92 (723)
Q Consensus 13 ~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS~Iyk~A~~Le 92 (723)
.|+.++.+++|.+||+...+||||++|++||||+||++||+++.|.++++|+.||+|||.||+.||.++|.+|.+|..|+
T Consensus 181 ~l~~~~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L~ 260 (292)
T 3aad_A 181 KMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIV 260 (292)
T ss_dssp TGGGSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHH
T ss_pred hhhcCcchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 36778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHhhhcChh
Q 004937 93 ELAKKKFHRLRAGIERSEKELKPE 116 (723)
Q Consensus 93 ~lfek~~kkL~~eie~~E~Elk~e 116 (723)
+.|++.+.++...+...|.++...
T Consensus 261 ~~~~~~~~~~~~~l~~le~~i~~~ 284 (292)
T 3aad_A 261 NVCYQTLTEYDEHLTQLEKDICTA 284 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988887777666543
No 35
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.83 E-value=3.9e-21 Score=189.46 Aligned_cols=97 Identities=15% Similarity=0.200 Sum_probs=91.3
Q ss_pred cHHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcC--CccCHHHHHHHHhcC---CCCCHHHHHHHHHHHHHhhhhc
Q 004937 3 DKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIE--NPMDFTTVRKKLANG---SYSSLDQFESDVFLICTNAMQY 77 (723)
Q Consensus 3 dkK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIK--kPMDLsTIkkKLkng---~Y~SieEF~~DV~LIf~NA~~Y 77 (723)
++++|+.||+.|++++.+++|.+||+ |+||+||+ +||||+||++||+++ .|.++++|++||+|||+||++|
T Consensus 77 ~~~~c~~iL~~l~~~~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~~y 152 (189)
T 2ro1_A 77 NQRKCERVLLALFCHEPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKL 152 (189)
T ss_dssp HHHHHHHHHHHHHHSTTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999998 78999998 899999999999999 9999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004937 78 NAPDTVYHKQARAIQELAKKKFHRLRA 104 (723)
Q Consensus 78 N~pdS~Iyk~A~~Le~lfek~~kkL~~ 104 (723)
| +++.+|.+|..|+++|++.|+++..
T Consensus 153 N-~~s~~~~~a~~L~~~Fe~~~~~~~~ 178 (189)
T 2ro1_A 153 T-EDKADVQSIIGLQRFFETRMNEAFG 178 (189)
T ss_dssp C-CSSCSSHHHHHHHHHHHHHHHHHTT
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 9 5888999999999999999988753
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.82 E-value=8.9e-21 Score=197.85 Aligned_cols=105 Identities=24% Similarity=0.465 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCH
Q 004937 4 KKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTV 83 (723)
Q Consensus 4 kK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS~ 83 (723)
...|..||+.|++++.+++|.+||++..+||||+||++||||+||++||+++.|.++++|+.||+|||+||+.||++++.
T Consensus 49 ~~~~~~il~~l~~~~~a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~ 128 (292)
T 3aad_A 49 SSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHS 128 (292)
T ss_dssp HHHHHHHHHHHSSSTTCGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCSSSH
T ss_pred HHHHHHHHHHHHhCCcchhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCCchH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 004937 84 YHKQARAIQELAKKKFHRLRAGIER 108 (723)
Q Consensus 84 Iyk~A~~Le~lfek~~kkL~~eie~ 108 (723)
+|.+|..|.++|++.+.++...+..
T Consensus 129 i~~~A~~L~~~~~~~~~~~~~~~~~ 153 (292)
T 3aad_A 129 LTQISQSMLDLCDEKLKEKEDKLAR 153 (292)
T ss_dssp HHHHHTHHHHTTTTTGGGSHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcchhhhhh
Confidence 9999999999999888776554433
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.80 E-value=2.2e-19 Score=189.25 Aligned_cols=86 Identities=27% Similarity=0.496 Sum_probs=83.0
Q ss_pred cCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHH
Q 004937 17 KDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHKQARAIQELAK 96 (723)
Q Consensus 17 ~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS~Iyk~A~~Le~lfe 96 (723)
++.+++|.+||++..+||||+||++||||+||++||+++.|.++++|+.||+|||+||++||.++|.+|.+|..|+++|+
T Consensus 178 ~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~ 257 (311)
T 2r0y_A 178 VKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFN 257 (311)
T ss_dssp SCTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CccHHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 004937 97 KKFHRL 102 (723)
Q Consensus 97 k~~kkL 102 (723)
+.+++.
T Consensus 258 ~~~~~~ 263 (311)
T 2r0y_A 258 YLIQKE 263 (311)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999773
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.79 E-value=3.2e-19 Score=191.14 Aligned_cols=86 Identities=27% Similarity=0.496 Sum_probs=83.1
Q ss_pred cCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHH
Q 004937 17 KDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHKQARAIQELAK 96 (723)
Q Consensus 17 ~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS~Iyk~A~~Le~lfe 96 (723)
++.+++|.+||+...+||||+||++||||+||++||+++.|.++++|+.||+|||+||+.||.++|.+|.+|..|+++|+
T Consensus 228 ~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~ 307 (361)
T 2r10_A 228 VKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFN 307 (361)
T ss_dssp SCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CcchhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 004937 97 KKFHRL 102 (723)
Q Consensus 97 k~~kkL 102 (723)
+.+.+.
T Consensus 308 ~~~~~~ 313 (361)
T 2r10_A 308 YLIQKE 313 (361)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999763
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.72 E-value=3.8e-18 Score=182.90 Aligned_cols=97 Identities=22% Similarity=0.317 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHcc--CCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHhhhhcCCC
Q 004937 4 KKSLELILDKLQKK--DTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYS-SLDQFESDVFLICTNAMQYNAP 80 (723)
Q Consensus 4 kK~Le~ILd~L~k~--d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~-SieEF~~DV~LIf~NA~~YN~p 80 (723)
...|..+|+.|.+. ..+++|.+||+...+||||+||++||||+||++|| +.|. ++++|+.||+|||.||+.||.+
T Consensus 80 ~~~~~~~l~~l~~~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~yN~~ 157 (361)
T 2r10_A 80 NRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEY 157 (361)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHHBCS
T ss_pred HHHHHHHHHHHHHcCCcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhcCCC
Confidence 46788888888664 44799999999999999999999999999999998 4555 8999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 004937 81 DTVYHKQARAIQELAKKKFHRL 102 (723)
Q Consensus 81 dS~Iyk~A~~Le~lfek~~kkL 102 (723)
+|.||.+|..|+++|.+.|.+.
T Consensus 158 ~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 158 DSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999988765
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.71 E-value=8.6e-18 Score=177.12 Aligned_cols=97 Identities=22% Similarity=0.317 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHc--cCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHhhhhcCCC
Q 004937 4 KKSLELILDKLQK--KDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYS-SLDQFESDVFLICTNAMQYNAP 80 (723)
Q Consensus 4 kK~Le~ILd~L~k--~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~-SieEF~~DV~LIf~NA~~YN~p 80 (723)
...|..+|+.+.+ +..+++|.+||+...+||||+||++||||+||++|| +.|. ++++|+.||+|||.||++||.+
T Consensus 30 ~~~~~~~L~~~~~~~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~yN~~ 107 (311)
T 2r0y_A 30 NRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEY 107 (311)
T ss_dssp HHHHHHHHHHHHHHSHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHcCCchhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHHccCC
Confidence 4455566666655 346789999999999999999999999999999999 5565 8999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 004937 81 DTVYHKQARAIQELAKKKFHRL 102 (723)
Q Consensus 81 dS~Iyk~A~~Le~lfek~~kkL 102 (723)
+|.+|++|..|+++|.+.|.+.
T Consensus 108 ~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 108 DSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999988765
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=152.26 Aligned_cols=98 Identities=20% Similarity=0.346 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHccCC------CCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhc
Q 004937 4 KKSLELILDKLQKKDT------YGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQY 77 (723)
Q Consensus 4 kK~Le~ILd~L~k~d~------s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~Y 77 (723)
++.|..|++.|+.+.+ +.+|.+.++.+ |+||. ++||+|.+|++||+++.|+++++|..||.+||.||+.|
T Consensus 9 q~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~NAr~y 84 (147)
T 3iu6_A 9 QELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERARRM 84 (147)
T ss_dssp HHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4678888889988754 34899998877 89998 99999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 004937 78 NAPDTVYHKQARAIQELAKKKFHRLRAG 105 (723)
Q Consensus 78 N~pdS~Iyk~A~~Le~lfek~~kkL~~e 105 (723)
|.++|.||.+|..|+.+|.+.++++...
T Consensus 85 N~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 85 NRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999998764
No 42
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.33 E-value=1.3e-12 Score=128.87 Aligned_cols=94 Identities=19% Similarity=0.311 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCH
Q 004937 4 KKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTV 83 (723)
Q Consensus 4 kK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS~ 83 (723)
++.|+.||+.|..++.+++|.+. .++.||||.+|++||+.+.|.++++|+.||.|||+||..||..++.
T Consensus 77 ~~~l~~vl~~L~~~~~s~~~~~y-----------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~~~e 145 (183)
T 3lqh_A 77 QISLKQVLTALLNSRTTSHLLRY-----------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPE 145 (183)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHTC-----------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHhccccHhhhhh-----------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCChh
Confidence 45689999999999999999873 2599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 004937 84 YHKQARAIQELAKKKFHRLRAGIER 108 (723)
Q Consensus 84 Iyk~A~~Le~lfek~~kkL~~eie~ 108 (723)
+.+++..|+.+|.+.++++-..+..
T Consensus 146 ~~~ag~~l~~~f~~~l~~vfpwf~~ 170 (183)
T 3lqh_A 146 IKKANSMVKSFFIRQMERVFPWFSV 170 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSCG
T ss_pred hhhhhhHHHHHHHHHHHHHCCCCCc
Confidence 9999999999999999988665443
No 43
>1dum_A Magainin 2; antibiotic, dimer, amphipathic helix, membrane, vesicle, bilayer, antimicrobial protein; NMR {Synthetic} SCOP: j.4.1.1 PDB: 2mag_A
Probab=34.97 E-value=2.1 Score=29.20 Aligned_cols=15 Identities=53% Similarity=1.083 Sum_probs=11.0
Q ss_pred cCCCCccCCccccCC
Q 004937 301 LPAGCKFGRGWVGEY 315 (723)
Q Consensus 301 Lp~g~~fG~GWvge~ 315 (723)
|-.--|||..||||-
T Consensus 6 lhsakkfgkawvgei 20 (26)
T 1dum_A 6 LHSAKKFGKAWVGEI 20 (26)
T ss_dssp TTTHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHH
Confidence 344457999999984
No 44
>3fke_A Polymerase cofactor VP35; RNA binding domain, coiled coil, interferon antiviral system evasion, RNA replication, RNA-binding; 1.40A {Zaire ebolavirus - mayinga} PDB: 3l25_A 3l26_A 3l28_A 3l27_A 3l29_A 3l2a_A
Probab=20.18 E-value=22 Score=32.80 Aligned_cols=16 Identities=38% Similarity=0.794 Sum_probs=12.5
Q ss_pred hhcCCCCccCCccccC
Q 004937 299 QALPAGCKFGRGWVGE 314 (723)
Q Consensus 299 ~~Lp~g~~fG~GWvge 314 (723)
|.+|+|-|-|+|||--
T Consensus 101 R~vPp~Pki~rGWVci 116 (129)
T 3fke_A 101 RPVPPSPKIDRGWVCV 116 (129)
T ss_dssp ECCCSSCCGGGTEEEE
T ss_pred CCCCCCCccCcceEEE
Confidence 5678888888888853
Done!