Query 004937
Match_columns 723
No_of_seqs 274 out of 1265
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 10:22:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004937.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004937hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e6ia_ a.29.2.1 (A:) GCN5 {Ba 99.9 2E-25 1.4E-29 200.4 11.8 102 2-103 3-104 (111)
2 d3d7ca1 a.29.2.1 (A:731-832) G 99.9 7.7E-25 5.6E-29 193.8 12.3 98 4-101 4-101 (102)
3 d1eqfa1 a.29.2.1 (A:1359-1497) 99.9 1.4E-24 9.9E-29 202.3 14.2 110 4-113 28-137 (139)
4 d3dwya1 a.29.2.1 (A:1084-1197) 99.9 5.3E-24 3.8E-28 191.9 12.6 103 4-106 8-113 (114)
5 d1wuma1 a.29.2.1 (A:715-832) P 99.9 3.9E-24 2.8E-28 194.0 10.4 99 4-102 15-113 (118)
6 d1eqfa2 a.29.2.1 (A:1498-1625) 99.9 8.5E-24 6.2E-28 194.5 12.8 108 5-112 8-120 (128)
7 d1utca1 a.118.1.4 (A:331-355) 8.2 26 0.0019 22.6 -0.8 9 714-722 12-20 (26)
8 d1p7ga2 d.44.1.1 (A:104-222) F 8.0 1.5E+02 0.011 24.8 4.0 44 260-307 66-117 (119)
9 d2jb0b1 d.4.1.1 (B:449-572) DN 6.8 1.5E+02 0.011 25.5 3.3 28 46-73 30-57 (124)
10 d2gykb1 d.4.1.1 (B:4-133) DNas 6.1 1.7E+02 0.013 25.2 3.3 29 46-74 33-61 (130)
No 1
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.92 E-value=2e-25 Score=200.41 Aligned_cols=102 Identities=31% Similarity=0.563 Sum_probs=99.2
Q ss_pred CcHHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCC
Q 004937 2 PDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 81 (723)
Q Consensus 2 PdkK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pd 81 (723)
|+++.|+.||+.|++++.+++|..||+++.+|+||++|++||||+||++||+++.|.++++|+.||+|||.||+.||+++
T Consensus 3 p~~~~l~~il~~l~~~~~a~pF~~pvd~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~ 82 (111)
T d1e6ia_ 3 PHDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGEN 82 (111)
T ss_dssp TTHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred hHHHHHHHHHHHHHhCCCChhhcCCCCchhCcCHHHHcCCchhHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 004937 82 TVYHKQARAIQELAKKKFHRLR 103 (723)
Q Consensus 82 S~Iyk~A~~Le~lfek~~kkL~ 103 (723)
|.++.+|..|++.|++.++++.
T Consensus 83 s~i~~~A~~l~~~f~~~~~~ip 104 (111)
T d1e6ia_ 83 TSYYKYANRLEKFFNNKVKEIP 104 (111)
T ss_dssp SHHHHHHHHHHHHHHHHHHTSG
T ss_pred CHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999887653
No 2
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.91 E-value=7.7e-25 Score=193.85 Aligned_cols=98 Identities=28% Similarity=0.482 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCH
Q 004937 4 KKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTV 83 (723)
Q Consensus 4 kK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS~ 83 (723)
+..|+.||+.|++++.+++|..||++..+||||++|++||||+||++||+++.|.++++|+.||+|||.||+.||+++|.
T Consensus 4 ~~~l~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~ 83 (102)
T d3d7ca1 4 YTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSE 83 (102)
T ss_dssp HHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHhCCCCCccCCCCChhhCcCHHHHcCCccCHHHHHHHhccCccCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004937 84 YHKQARAIQELAKKKFHR 101 (723)
Q Consensus 84 Iyk~A~~Le~lfek~~kk 101 (723)
+|.+|..|+++|.+.+++
T Consensus 84 ~~~~A~~l~~~f~~~~ke 101 (102)
T d3d7ca1 84 YCRCASALEKFFYFKLKE 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999887754
No 3
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.91 E-value=1.4e-24 Score=202.26 Aligned_cols=110 Identities=25% Similarity=0.466 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCH
Q 004937 4 KKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTV 83 (723)
Q Consensus 4 kK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS~ 83 (723)
...|..||+.|..++.+++|.+||+++.+||||++|++||||.||++||+++.|.++++|..||.|||.||+.||+++|.
T Consensus 28 ~~~l~~il~~l~~~~~s~pF~~Pvd~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~ 107 (139)
T d1eqfa1 28 SSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHS 107 (139)
T ss_dssp HHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHHcCCCchhhhCCCChhhccCHHHHcCChhhHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 004937 84 YHKQARAIQELAKKKFHRLRAGIERSEKEL 113 (723)
Q Consensus 84 Iyk~A~~Le~lfek~~kkL~~eie~~E~El 113 (723)
++.+|..|.++|++.|+++..++...+..+
T Consensus 108 i~~~A~~L~~~~~~~~~~~~~~~~~~e~~i 137 (139)
T d1eqfa1 108 LTQISQSMLDLCDEKLKEKEDKLARLEKAI 137 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999887776655544
No 4
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.90 E-value=5.3e-24 Score=191.90 Aligned_cols=103 Identities=29% Similarity=0.556 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHcc-CCCCcccCCCCCC--CCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCC
Q 004937 4 KKSLELILDKLQKK-DTYGVYAEPVDPE--ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP 80 (723)
Q Consensus 4 kK~Le~ILd~L~k~-d~s~pF~ePVd~e--elPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~p 80 (723)
++.|..+|+.|+++ +.+++|..||++. .+||||++|++||||.+|++||+++.|.++++|++||+|||+||+.||++
T Consensus 8 ~~~l~~~l~~l~~~~p~a~pF~~pvd~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~ 87 (114)
T d3dwya1 8 RQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRK 87 (114)
T ss_dssp HHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHhcCcCCCccCCCCChhhccCCCHHHHcCCCCCHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHCCC
Confidence 57899999999987 5889999999976 69999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhH
Q 004937 81 DTVYHKQARAIQELAKKKFHRLRAGI 106 (723)
Q Consensus 81 dS~Iyk~A~~Le~lfek~~kkL~~ei 106 (723)
+|.+|..|..|++.|++.+.++.+.+
T Consensus 88 ~s~~~~~A~~L~~~f~~~~~~i~~~~ 113 (114)
T d3dwya1 88 TSRVYKFCSKLAEVFEQEIDPVMQSL 113 (114)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999887653
No 5
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.90 E-value=3.9e-24 Score=194.02 Aligned_cols=99 Identities=30% Similarity=0.483 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCCCCCH
Q 004937 4 KKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTV 83 (723)
Q Consensus 4 kK~Le~ILd~L~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~pdS~ 83 (723)
++.|..||+.|++++.+++|..||++..+||||++|++||||.+|++||+++.|.++++|+.||+|||+||+.||+++|.
T Consensus 15 ~~~l~~il~~l~~~~~a~~F~~pv~~~~~pdY~~iI~~PmdL~~I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yn~~~s~ 94 (118)
T d1wuma1 15 YSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEYNPPESE 94 (118)
T ss_dssp HHHHHHHHHHHHHSSSCHHHHSCCCSSSSSSCTTTCSSCCCHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHSCTTSS
T ss_pred HHHHHHHHHHHHhCCCcCcccCCCChhhCcCHHHHcCChhhHHHHHHHhcccccCchHHHHHHHHHHHHHHHHHCCCCCH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004937 84 YHKQARAIQELAKKKFHRL 102 (723)
Q Consensus 84 Iyk~A~~Le~lfek~~kkL 102 (723)
+|.+|..|+++|.+.++++
T Consensus 95 ~~~~A~~l~~~f~~~~~e~ 113 (118)
T d1wuma1 95 YYKCANILEKFFFSKIKEA 113 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 9999999999999988765
No 6
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.90 E-value=8.5e-24 Score=194.51 Aligned_cols=108 Identities=31% Similarity=0.552 Sum_probs=95.8
Q ss_pred HHHHHHHHHH-----HccCCCCcccCCCCCCCCCChhhhcCCccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcCC
Q 004937 5 KSLELILDKL-----QKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNA 79 (723)
Q Consensus 5 K~Le~ILd~L-----~k~d~s~pF~ePVd~eelPDYYeIIKkPMDLsTIkkKLkng~Y~SieEF~~DV~LIf~NA~~YN~ 79 (723)
..|..||+.| ++++.+++|.+||+++.+||||++|++||||+||++||+++.|.++++|+.||+|||+||+.||+
T Consensus 8 ~~~~~il~~l~~~~~~~~p~a~pF~~pVd~~~~PdY~~vIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~ 87 (128)
T d1eqfa2 8 VAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNG 87 (128)
T ss_dssp HHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCChhcCCCCcccCcCHHHHcCCcccHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHCC
Confidence 3456666554 45678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 004937 80 PDTVYHKQARAIQELAKKKFHRLRAGIERSEKE 112 (723)
Q Consensus 80 pdS~Iyk~A~~Le~lfek~~kkL~~eie~~E~E 112 (723)
++|.+|.+|..|.+.|.+.+.++...+...+.+
T Consensus 88 ~~s~i~~~A~~L~~~~~~~l~~~~~~~~~le~~ 120 (128)
T d1eqfa2 88 PESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKD 120 (128)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHhH
Confidence 999999999999999999998877665544443
No 7
>d1utca1 a.118.1.4 (A:331-355) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.20 E-value=26 Score=22.60 Aligned_cols=9 Identities=67% Similarity=0.944 Sum_probs=6.7
Q ss_pred CCCCccccC
Q 004937 714 SQQPDLALQ 722 (723)
Q Consensus 714 ~~~~~~~~~ 722 (723)
-|.|||||.
T Consensus 12 lqnpdlalr 20 (26)
T d1utca1 12 LQNPDLALR 20 (26)
T ss_dssp TCCHHHHHH
T ss_pred ccChhHHHH
Confidence 478888874
No 8
>d1p7ga2 d.44.1.1 (A:104-222) Fe superoxide dismutase (FeSOD) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=7.98 E-value=1.5e+02 Score=24.76 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=32.3
Q ss_pred ccceeEeccccchhhH--------HHHHHHHhhhChhHHHHHHHHHHhhcCCCCcc
Q 004937 260 TKHLVAVGLHAEYSYA--------RSLARFAATLGPVAWKVASRRIEQALPAGCKF 307 (723)
Q Consensus 260 ~K~Lv~Vg~~~e~~Ya--------rSLarFaa~lGp~~w~iAs~ri~~~Lp~g~~f 307 (723)
...|+.+- -.||||= .=|..|- -=+=|.+|.+|++++|...+.+
T Consensus 66 ~~pll~lD-vWEHAYylDy~n~r~~Yi~~~~---~~inW~~v~~r~~~A~~~~~~~ 117 (119)
T d1p7ga2 66 AQVLLALD-VWEHAYYLQYKNDRGSYVDNWW---NVVNWDDVERRLQKALNGQIAL 117 (119)
T ss_dssp CEEEEEEE-CSGGGTHHHHTTCHHHHHHHHG---GGBCHHHHHHHHHHHHTTBCCS
T ss_pred CeeEEEEe-chhhhhHHhhhccHHHHHHHHH---HHcCHHHHHHHHHHHHcCCccc
Confidence 44677777 5799992 2444454 3478999999999999887654
No 9
>d2jb0b1 d.4.1.1 (B:449-572) DNase domain of colicin E7 {Escherichia coli [TaxId: 562]}
Probab=6.82 E-value=1.5e+02 Score=25.53 Aligned_cols=28 Identities=18% Similarity=0.412 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 004937 46 TTVRKKLANGSYSSLDQFESDVFLICTN 73 (723)
Q Consensus 46 sTIkkKLkng~Y~SieEF~~DV~LIf~N 73 (723)
..|..||+.+.|.++++|...+.+-+.|
T Consensus 30 ~qIadkLrGr~F~sFd~FR~afW~~Va~ 57 (124)
T d2jb0b1 30 DRIANKLRDKEFKSFDDFRKKFWEEVSK 57 (124)
T ss_dssp HHHHHHHTTCEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcCCCHHHHHHHHHHHHhc
Confidence 4689999999999999998888765554
No 10
>d2gykb1 d.4.1.1 (B:4-133) DNase domain of colicin E9 {Escherichia coli [TaxId: 562]}
Probab=6.07 E-value=1.7e+02 Score=25.25 Aligned_cols=29 Identities=21% Similarity=0.420 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhh
Q 004937 46 TTVRKKLANGSYSSLDQFESDVFLICTNA 74 (723)
Q Consensus 46 sTIkkKLkng~Y~SieEF~~DV~LIf~NA 74 (723)
..|..||+.+.|.++++|...+.+-+.|.
T Consensus 33 ~qIadkLrGr~F~sFd~FR~afW~~Va~D 61 (130)
T d2gykb1 33 DRIADKLRDKEFKSFDDFRKAVWEEVSKD 61 (130)
T ss_dssp HHHHHHHTTCEESSHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCccCCHHHHHHHHHHHHhcC
Confidence 46899999999999999988887766654
Done!